Citrus Sinensis ID: 040319
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 812 | 2.2.26 [Sep-21-2011] | |||||||
| Q9FFN1 | 896 | Pentatricopeptide repeat- | yes | no | 0.998 | 0.905 | 0.601 | 0.0 | |
| Q7Y211 | 890 | Pentatricopeptide repeat- | no | no | 0.938 | 0.856 | 0.353 | 1e-137 | |
| Q9LFL5 | 850 | Pentatricopeptide repeat- | no | no | 0.983 | 0.94 | 0.330 | 1e-136 | |
| Q9SVP7 | 1064 | Pentatricopeptide repeat- | no | no | 0.933 | 0.712 | 0.330 | 1e-133 | |
| Q9SY02 | 781 | Pentatricopeptide repeat- | no | no | 0.912 | 0.948 | 0.342 | 1e-129 | |
| Q5G1T1 | 850 | Pentatricopeptide repeat- | no | no | 0.955 | 0.912 | 0.334 | 1e-128 | |
| Q9LYV3 | 822 | Putative pentatricopeptid | no | no | 0.940 | 0.929 | 0.330 | 1e-127 | |
| Q3E6Q1 | 809 | Pentatricopeptide repeat- | no | no | 0.940 | 0.944 | 0.321 | 1e-127 | |
| Q9ZUW3 | 868 | Pentatricopeptide repeat- | no | no | 0.948 | 0.887 | 0.325 | 1e-126 | |
| Q9SHZ8 | 786 | Pentatricopeptide repeat- | no | no | 0.875 | 0.904 | 0.328 | 1e-126 |
| >sp|Q9FFN1|PP363_ARATH Pentatricopeptide repeat-containing protein At5g03800 OS=Arabidopsis thaliana GN=EMB175 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 1031 bits (2666), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 490/815 (60%), Positives = 626/815 (76%), Gaps = 4/815 (0%)
Query: 1 FFNSLRLSVQCGEVSLAKAIHASLIKLLLEQDTRFGNPLISAYLKLGHVADAYKIFYGLS 60
FF LRLS Q +V + KA+HAS +KL E+ TR GN LIS YLKLG +A +F LS
Sbjct: 83 FFYLLRLSAQYHDVEVTKAVHASFLKLR-EEKTRLGNALISTYLKLGFPREAILVFVSLS 141
Query: 61 SPNVVSFTSLISGLAKLGREEEAIELFFRMRSEGIV-PNEHSFVAILTACIRLLELELGF 119
SP VVS+T+LISG ++L E EA+++FFRMR G+V PNE++FVAILTAC+R+ LG
Sbjct: 142 SPTVVSYTALISGFSRLNLEIEALKVFFRMRKAGLVQPNEYTFVAILTACVRVSRFSLGI 201
Query: 120 QIHALIVKMGCVDSVFVTNALMGLYGKFS-FCLDYLLKLFDELPHKDTVSWNTVISSVVN 178
QIH LIVK G ++SVFV+N+LM LY K S D +LKLFDE+P +D SWNTV+SS+V
Sbjct: 202 QIHGLIVKSGFLNSVFVSNSLMSLYDKDSGSSCDDVLKLFDEIPQRDVASWNTVVSSLVK 261
Query: 179 EFEYEKAFELFRDMKRDNGFTVDYFTISTLLTACTGCFVLMEGRAVHAHAIRIGLGANLS 238
E + KAF+LF +M R GF VD FT+STLL++CT VL+ GR +H AIRIGL LS
Sbjct: 262 EGKSHKAFDLFYEMNRVEGFGVDSFTLSTLLSSCTDSSVLLRGRELHGRAIRIGLMQELS 321
Query: 239 VNNALIGFYTKCGRVKDVVALLERMPVMDIITLTEIIIAYMEFGYVDLAVEIFDKMPEKN 298
VNNALIGFY+K +K V +L E M D +T TE+I AYM FG VD AVEIF + EKN
Sbjct: 322 VNNALIGFYSKFWDMKKVESLYEMMMAQDAVTFTEMITAYMSFGMVDSAVEIFANVTEKN 381
Query: 299 SVSYNALLAGYCKNGKAMEALGLFVKLLEEGLVLTEFTLTSVVNACGLIMEAKLSEQIHG 358
+++YNAL+AG+C+NG ++AL LF +L+ G+ LT+F+LTS V+ACGL+ E K+SEQIHG
Sbjct: 382 TITYNALMAGFCRNGHGLKALKLFTDMLQRGVELTDFSLTSAVDACGLVSEKKVSEQIHG 441
Query: 359 FVMKFGLGSNDCIEAALLDMLTRCGRMADAEKMFYRWPTDRDDSIIWTSMICGYARSGKP 418
F +KFG N CI+ ALLDM TRC RMADAE+MF +WP++ D S TS+I GYAR+G P
Sbjct: 442 FCIKFGTAFNPCIQTALLDMCTRCERMADAEEMFDQWPSNLDSSKATTSIIGGYARNGLP 501
Query: 419 EHAILLFHQSQSEATVVPDEIALTSVLGVCGTLGFHEMGKQIHSYALKTGFSSDLGVANS 478
+ A+ LFH++ E + DE++LT +L VCGTLGF EMG QIH YALK G+ SD+ + NS
Sbjct: 502 DKAVSLFHRTLCEQKLFLDEVSLTLILAVCGTLGFREMGYQIHCYALKAGYFSDISLGNS 561
Query: 479 MVSMYFKCCNMSNAIKAFNKMPSHDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPD 538
++SMY KCC+ +AIK FN M HD++SWN LI+ ++L R GDEALA+WS M + IKPD
Sbjct: 562 LISMYAKCCDSDDAIKIFNTMREHDVISWNSLISCYILQRNGDEALALWSRMNEKEIKPD 621
Query: 539 AITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLEEAEE 598
IT L+ISA+RYT N + SCR LFLSMKTIY+IEPT+EHY + V VLG+WG LEEAE+
Sbjct: 622 IITLTLVISAFRYTESNKLSSCRDLFLSMKTIYDIEPTTEHYTAFVRVLGHWGLLEEAED 681
Query: 599 TINNMPFQPKVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGR 658
TIN+MP QP+VSV RALLDSCRI NT++ KRVAK IL+ +P+ P+ YIL SN+YS+SG
Sbjct: 682 TINSMPVQPEVSVLRALLDSCRIHSNTSVAKRVAKLILSTKPETPSEYILKSNIYSASGF 741
Query: 659 WHNSELVREDMREKGFRKHPSRSWIIHQNKVHSFYVRDKSHPREKDIYSGLEILILECLK 718
WH SE++RE+MRE+G+RKHP++SWIIH+NK+HSF+ RD SHP+EKDIY GLEILI+ECLK
Sbjct: 742 WHRSEMIREEMRERGYRKHPAKSWIIHENKIHSFHARDTSHPQEKDIYRGLEILIMECLK 801
Query: 719 AGYVPDTSFVLHEVEEHQKKDFLFYHSAKLAATYGLLTTPA-GQPVRIVKNILTCGDCHS 777
GY P+T +VL EV+E KK FLF+HSAKLA TYG+L++ G+PVR++KN++ CGDCH
Sbjct: 802 VGYEPNTEYVLQEVDEFMKKSFLFHHSAKLAVTYGILSSNTRGKPVRVMKNVMLCGDCHE 861
Query: 778 FLKYVSVVTRREIFLRDASGFHHFLNGQCSCKDYW 812
F KY+SVV +REI LRD+SGFHHF+NG+CSC+D W
Sbjct: 862 FFKYISVVVKREIVLRDSSGFHHFVNGKCSCRDLW 896
|
May play a role in embryogenesis. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q7Y211|PP285_ARATH Pentatricopeptide repeat-containing protein At3g57430, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H81 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 489 bits (1260), Expect = e-137, Method: Compositional matrix adjust.
Identities = 289/817 (35%), Positives = 443/817 (54%), Gaps = 55/817 (6%)
Query: 13 EVSLAKAIHASLIKLLLEQDT-RFGNPLISAYLKLGHVADAYKIFYGLSSPNVVSFTSLI 71
++ L K IHA + K D+ N L++ Y K G YK+F +S N VS+ SLI
Sbjct: 112 DMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLI 171
Query: 72 SGLAKLGREEEAIELFFRMRSEGIVPNEHSFVAILTACIRLLELE---LGFQIHALIVKM 128
S L + E A+E F M E + P+ + V+++TAC L E +G Q+HA ++
Sbjct: 172 SSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRK 231
Query: 129 GCVDSVFVTNALMGLYGKFSFCLDYLLKLFDELPHKDTVSWNTVISSVVNEFEYEKAFEL 188
G ++S F+ N L+ +YGK + L +D V+WNTV+SS+ + +A E
Sbjct: 232 GELNS-FIINTLVAMYGKLGKLASSKV-LLGSFGGRDLVTWNTVLSSLCQNEQLLEALEY 289
Query: 189 FRDMKRDNGFTVDYFTISTLLTACTGCFVLMEGRAVHAHAIRIG-LGANLSVNNALIGFY 247
R+M + G D FTIS++L AC+ +L G+ +HA+A++ G L N V +AL+ Y
Sbjct: 290 LREMVLE-GVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMY 348
Query: 248 TKCGRVKDVVALLERMPVMDIITLTEIIIAYMEFGYVDLAVEIFDKMPEKNSVSYNALLA 307
C +V +FD M ++ +NA++A
Sbjct: 349 CNCKQVLS-------------------------------GRRVFDGMFDRKIGLWNAMIA 377
Query: 308 GYCKNGKAMEALGLFVKLLEE-GLVLTEFTLTSVVNACGLIMEAKLSEQIHGFVMKFGLG 366
GY +N EAL LF+ + E GL+ T+ VV AC E IHGFV+K GL
Sbjct: 378 GYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLD 437
Query: 367 SNDCIEAALLDMLTRCGRMADAEKMFYRWPTDRDDSIIWTSMICGYARSGKPEHAILLFH 426
+ ++ L+DM +R G++ A ++F + DR D + W +MI GY S E A+LL H
Sbjct: 438 RDRFVQNTLMDMYSRLGKIDIAMRIFGKM-EDR-DLVTWNTMITGYVFSEHHEDALLLLH 495
Query: 427 QSQ----------SEATVVPDEIALTSVLGVCGTLGFHEMGKQIHSYALKTGFSSDLGVA 476
+ Q S ++ P+ I L ++L C L GK+IH+YA+K ++D+ V
Sbjct: 496 KMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVG 555
Query: 477 NSMVSMYFKCCNMSNAIKAFNKMPSHDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIK 536
+++V MY KC + + K F+++P ++++WN +I + +H G EA+ + M +K
Sbjct: 556 SALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVK 615
Query: 537 PDAITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLEEA 596
P+ +TF+ + +A ++ +VD ++F MK Y +EP+S+HYA +V +LG G ++EA
Sbjct: 616 PNEVTFISVFAACSHS--GMVDEGLRIFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKEA 673
Query: 597 EETINNMPFQ-PKVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSS 655
+ +N MP K W +LL + RI N IG+ A++++ +EP + Y+L++N+YSS
Sbjct: 674 YQLMNMMPRDFNKAGAWSSLLGASRIHNNLEIGEIAAQNLIQLEPNVASHYVLLANIYSS 733
Query: 656 SGRWHNSELVREDMREKGFRKHPSRSWIIHQNKVHSFYVRDKSHPREKDIYSGLEILILE 715
+G W + VR +M+E+G RK P SWI H ++VH F D SHP+ + + LE L
Sbjct: 734 AGLWDKATEVRRNMKEQGVRKEPGCSWIEHGDEVHKFVAGDSSHPQSEKLSGYLETLWER 793
Query: 716 CLKAGYVPDTSFVLHEVEEHQKKDFLFYHSAKLAATYGLLTTPAGQPVRIVKNILTCGDC 775
K GYVPDTS VLH VEE +K+ L HS KLA +G+L T G +R+ KN+ C DC
Sbjct: 794 MRKEGYVPDTSCVLHNVEEDEKEILLCGHSEKLAIAFGILNTSPGTIIRVAKNLRVCNDC 853
Query: 776 HSFLKYVSVVTRREIFLRDASGFHHFLNGQCSCKDYW 812
H K++S + REI LRD FH F NG CSC DYW
Sbjct: 854 HLATKFISKIVDREIILRDVRRFHRFKNGTCSCGDYW 890
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LFL5|PP390_ARATH Pentatricopeptide repeat-containing protein At5g16860 OS=Arabidopsis thaliana GN=PCMP-H92 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 484 bits (1247), Expect = e-136, Method: Compositional matrix adjust.
Identities = 270/818 (33%), Positives = 428/818 (52%), Gaps = 19/818 (2%)
Query: 10 QCGEVSLAKAIHASLIKLLLEQDTRFGNPLISAYLKLGHVADAYKIF--YGLSSPNVVSF 67
+C +S K IH L+ + + LIS Y+ +G ++ A + + S V +
Sbjct: 37 KCKTISQVKLIHQKLLSFGI-LTLNLTSHLISTYISVGCLSHAVSLLRRFPPSDAGVYHW 95
Query: 68 TSLISGLAKLGREEEAIELFFRMRSEGIVPNEHSFVAILTACIRLLELELGFQIHALIVK 127
SLI G + + LF M S P+ ++F + AC + + G HAL +
Sbjct: 96 NSLIRSYGDNGCANKCLYLFGLMHSLSWTPDNYTFPFVFKACGEISSVRCGESAHALSLV 155
Query: 128 MGCVDSVFVTNALMGLYGKFSFCLDYLLKLFDELPHKDTVSWNTVISSVVNEFEYEKAFE 187
G + +VFV NAL+ +Y + D K+FDE+ D VSWN++I S + + A E
Sbjct: 156 TGFISNVFVGNALVAMYSRCRSLSD-ARKVFDEMSVWDVVSWNSIIESYAKLGKPKVALE 214
Query: 188 LFRDMKRDNGFTVDYFTISTLLTACTGCFVLMEGRAVHAHAIRIGLGANLSVNNALIGFY 247
+F M + G D T+ +L C G+ +H A+ + N+ V N L+ Y
Sbjct: 215 MFSRMTNEFGCRPDNITLVNVLPPCASLGTHSLGKQLHCFAVTSEMIQNMFVGNCLVDMY 274
Query: 248 TKCGRVKDVVALLERMPVMDIITLTEIIIAYMEFGYVDLAVEIFDKMPEK----NSVSYN 303
KCG + + + M V D+++ ++ Y + G + AV +F+KM E+ + V+++
Sbjct: 275 AKCGMMDEANTVFSNMSVKDVVSWNAMVAGYSQIGRFEDAVRLFEKMQEEKIKMDVVTWS 334
Query: 304 ALLAGYCKNGKAMEALGLFVKLLEEGLVLTEFTLTSVVNACGLIMEAKLSEQIHGFVMKF 363
A ++GY + G EALG+ ++L G+ E TL SV++ C + ++IH + +K+
Sbjct: 335 AAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGKEIHCYAIKY 394
Query: 364 -------GLGSNDCIEAALLDMLTRCGRMADAEKMFYRWPTDRDDSIIWTSMICGYARSG 416
G G + + L+DM +C ++ A MF D + WT MI GY++ G
Sbjct: 395 PIDLRKNGHGDENMVINQLIDMYAKCKKVDTARAMFDSLSPKERDVVTWTVMIGGYSQHG 454
Query: 417 KPEHAI-LLFHQSQSEATVVPDEIALTSVLGVCGTLGFHEMGKQIHSYALKTGFSS-DLG 474
A+ LL + + P+ ++ L C +L +GKQIH+YAL+ ++ L
Sbjct: 455 DANKALELLSEMFEEDCQTRPNAFTISCALVACASLAALRIGKQIHAYALRNQQNAVPLF 514
Query: 475 VANSMVSMYFKCCNMSNAIKAFNKMPSHDIVSWNGLIAGHLLHRQGDEALAVWSSMEKAS 534
V+N ++ MY KC ++S+A F+ M + + V+W L+ G+ +H G+EAL ++ M +
Sbjct: 515 VSNCLIDMYAKCGSISDARLVFDNMMAKNEVTWTSLMTGYGMHGYGEEALGIFDEMRRIG 574
Query: 535 IKPDAITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLE 594
K D +T ++++ Y ++ ++D + F MKT++ + P EHYA LV +LG G L
Sbjct: 575 FKLDGVTLLVVL--YACSHSGMIDQGMEYFNRMKTVFGVSPGPEHYACLVDLLGRAGRLN 632
Query: 595 EAEETINNMPFQPKVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYS 654
A I MP +P VW A L CRI +G+ A+ I + +Y L+SNLY+
Sbjct: 633 AALRLIEEMPMEPPPVVWVAFLSCCRIHGKVELGEYAAEKITELASNHDGSYTLLSNLYA 692
Query: 655 SSGRWHNSELVREDMREKGFRKHPSRSWIIHQNKVHSFYVRDKSHPREKDIYSGLEILIL 714
++GRW + +R MR KG +K P SW+ +F+V DK+HP K+IY L +
Sbjct: 693 NAGRWKDVTRIRSLMRHKGVKKRPGCSWVEGIKGTTTFFVGDKTHPHAKEIYQVLLDHMQ 752
Query: 715 ECLKAGYVPDTSFVLHEVEEHQKKDFLFYHSAKLAATYGLLTTPAGQPVRIVKNILTCGD 774
GYVP+T F LH+V++ +K D LF HS KLA YG+LTTP G +RI KN+ CGD
Sbjct: 753 RIKDIGYVPETGFALHDVDDEEKDDLLFEHSEKLALAYGILTTPQGAAIRITKNLRVCGD 812
Query: 775 CHSFLKYVSVVTRREIFLRDASGFHHFLNGQCSCKDYW 812
CH+ Y+S + +I LRD+S FHHF NG CSCK YW
Sbjct: 813 CHTAFTYMSRIIDHDIILRDSSRFHHFKNGSCSCKGYW 850
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SVP7|PP307_ARATH Pentatricopeptide repeat-containing protein At4g13650 OS=Arabidopsis thaliana GN=PCMP-H42 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 474 bits (1221), Expect = e-133, Method: Compositional matrix adjust.
Identities = 265/802 (33%), Positives = 432/802 (53%), Gaps = 44/802 (5%)
Query: 14 VSLAKAIHASLIKLLLEQDTRFGNPLISAYLKLGHVADAYKIFYGLSSPNVVSFTSLISG 73
+ + + +H ++KL DT N L+S Y LG++ A IF +S + V++ +LI+G
Sbjct: 304 LEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLING 363
Query: 74 LAKLGREEEAIELFFRMRSEGIVPNEHSFVAILTACIRLLELELGFQIHALIVKMGCVDS 133
L++ G E+A+ELF RM +G+ P+ ++ +++ AC L G Q+HA K+G +
Sbjct: 364 LSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASN 423
Query: 134 VFVTNALMGLYGK---FSFCLDYLLKLFDELPHKDTVSWNTVISSVVNEFEYEKAFELFR 190
+ AL+ LY K LDY L E ++ V WN ++ + + +F +FR
Sbjct: 424 NKIEGALLNLYAKCADIETALDYFL----ETEVENVVLWNVMLVAYGLLDDLRNSFRIFR 479
Query: 191 DMKRDNGFTVDYFTISTLLTACTGCFVLMEGRAVHAHAIRIGLGANLSVNNALIGFYTKC 250
M+ + + +T ++L C L G +H+ I+ N V + LI Y K
Sbjct: 480 QMQIEE-IVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKL 538
Query: 251 GRVKDVVALLERMPVMDIITLTEIIIAYMEFGYVDLAVEIFDKMPEKNSVSYNALLAGYC 310
G++ D A +I + K+ VS+ ++AGY
Sbjct: 539 GKL-------------------------------DTAWDILIRFAGKDVVSWTTMIAGYT 567
Query: 311 KNGKAMEALGLFVKLLEEGLVLTEFTLTSVVNACGLIMEAKLSEQIHGFVMKFGLGSNDC 370
+ +AL F ++L+ G+ E LT+ V+AC + K +QIH G S+
Sbjct: 568 QYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLP 627
Query: 371 IEAALLDMLTRCGRMADAEKMFYRWPTDRDDSIIWTSMICGYARSGKPEHAILLFHQSQS 430
+ AL+ + +RCG++ ++ F + T+ D+I W +++ G+ +SG E A+ +F +
Sbjct: 628 FQNALVTLYSRCGKIEESYLAFEQ--TEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNR 685
Query: 431 EATVVPDEIALTSVLGVCGTLGFHEMGKQIHSYALKTGFSSDLGVANSMVSMYFKCCNMS 490
E + + S + + GKQ+H+ KTG+ S+ V N+++SMY KC ++S
Sbjct: 686 EG-IDNNNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSETEVCNALISMYAKCGSIS 744
Query: 491 NAIKAFNKMPSHDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDAITFVLIISAYR 550
+A K F ++ + + VSWN +I + H G EAL + M ++++P+ +T V ++SA
Sbjct: 745 DAEKQFLEVSTKNEVSWNAIINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSAC- 803
Query: 551 YTNLNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLEEAEETINNMPFQPKVS 610
+++ LVD F SM + Y + P EHY +V +L G L A+E I MP +P
Sbjct: 804 -SHIGLVDKGIAYFESMNSEYGLSPKPEHYVCVVDMLTRAGLLSRAKEFIQEMPIKPDAL 862
Query: 611 VWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWHNSELVREDMR 670
VWR LL +C + N IG+ A H+L +EP+D ATY+L+SNLY+ S +W +L R+ M+
Sbjct: 863 VWRTLLSACVVHKNMEIGEFAAHHLLELEPEDSATYVLLSNLYAVSKKWDARDLTRQKMK 922
Query: 671 EKGFRKHPSRSWIIHQNKVHSFYVRDKSHPREKDIYSGLEILILECLKAGYVPDTSFVLH 730
EKG +K P +SWI +N +HSFYV D++HP +I+ + L + GYV D +L+
Sbjct: 923 EKGVKKEPGQSWIEVKNSIHSFYVGDQNHPLADEIHEYFQDLTKRASEIGYVQDCFSLLN 982
Query: 731 EVEEHQKKDFLFYHSAKLAATYGLLTTPAGQPVRIVKNILTCGDCHSFLKYVSVVTRREI 790
E++ QK +F HS KLA ++GLL+ PA P+ ++KN+ C DCH+++K+VS V+ REI
Sbjct: 983 ELQHEQKDPIIFIHSEKLAISFGLLSLPATVPINVMKNLRVCNDCHAWIKFVSKVSNREI 1042
Query: 791 FLRDASGFHHFLNGQCSCKDYW 812
+RDA FHHF G CSCKDYW
Sbjct: 1043 IVRDAYRFHHFEGGACSCKDYW 1064
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SY02|PP301_ARATH Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana GN=PCMP-H24 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 463 bits (1192), Expect = e-129, Method: Compositional matrix adjust.
Identities = 279/815 (34%), Positives = 440/815 (53%), Gaps = 74/815 (9%)
Query: 2 FNSLRLSVQCGEVSLAKAIHASLIKLLL---EQDTRFGNPLISAYLKLGHVADAYKIFYG 58
F+SL+ + Q I S K LL + D + N IS+Y++ G +A ++F
Sbjct: 37 FHSLKRATQT-------QIQKSQTKPLLKCGDSDIKEWNVAISSYMRTGRCNEALRVFKR 89
Query: 59 LSSPNVVSFTSLISGLAKLGREEEAIELFFRMRSEGIVPNEHSFVAILTACIRLLELELG 118
+ + VS+ +ISG + G E A +LF M +V S+ ++ +R L
Sbjct: 90 MPRWSSVSYNGMISGYLRNGEFELARKLFDEMPERDLV----SWNVMIKGYVRNRNLGKA 145
Query: 119 FQIHALIVKMGCVDSVFVTNALMGLYGKFSFCLDYLLKLFDELPHKDTVSWNTVISSVVN 178
++ ++ + V N ++ Y + + C+D +FD +P K+ VSWN ++S+ V
Sbjct: 146 RELFEIMPER----DVCSWNTMLSGYAQ-NGCVDDARSVFDRMPEKNDVSWNALLSAYVQ 200
Query: 179 EFEYEKAFELFRDMKRDNGFTVDYFTISTLLTACTGCFVLMEGRAVHAHAIRIGLGANLS 238
+ E+A LF+ R+N V + + LL G FV + + V A +
Sbjct: 201 NSKMEEACMLFKS--RENWALVSW---NCLL----GGFV-KKKKIVEARQFFDSMNVRDV 250
Query: 239 VN-NALIGFYTKCGRVKDVVALLERMPVMDIITLTEIIIAYMEFGYVDLAVEIFDKMPEK 297
V+ N +I Y + G++ + L + PV D+ T T ++ Y++ V+ A E+FDKMPE+
Sbjct: 251 VSWNTIITGYAQSGKIDEARQLFDESPVQDVFTWTAMVSGYIQNRMVEEARELFDKMPER 310
Query: 298 NSVSYNALLAGYCKNGKAMEALGLFVKLLEEGLVLTEFTLTSVVNACGLIMEAKLSEQIH 357
N VS+NA+LAGY + G+ ME ++ V T T+ I
Sbjct: 311 NEVSWNAMLAGYVQ-GERMEMAKELFDVMPCRNVSTWNTM------------------IT 351
Query: 358 GFVMKFGLGSNDCIEAALLDMLTRCGRMADAEKMFYRWPTDRDDSIIWTSMICGYARSGK 417
G+ +CG++++A+ +F + P + D + W +MI GY++SG
Sbjct: 352 GYA--------------------QCGKISEAKNLFDKMP--KRDPVSWAAMIAGYSQSGH 389
Query: 418 PEHAILLFHQSQSEATVVPDEIALTSVLGVCGTLGFHEMGKQIHSYALKTGFSSDLGVAN 477
A+ LF Q + E + + + +S L C + E+GKQ+H +K G+ + V N
Sbjct: 390 SFEALRLFVQMEREGGRL-NRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGN 448
Query: 478 SMVSMYFKCCNMSNAIKAFNKMPSHDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKP 537
+++ MY KC ++ A F +M DIVSWN +IAG+ H G+ AL + SM++ +KP
Sbjct: 449 ALLLMYCKCGSIEEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEVALRFFESMKREGLKP 508
Query: 538 DAITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLEEAE 597
D T V ++SA +T L VD R+ F +M Y + P S+HYA +V +LG G LE+A
Sbjct: 509 DDATMVAVLSACSHTGL--VDKGRQYFYTMTQDYGVMPNSQHYACMVDLLGRAGLLEDAH 566
Query: 598 ETINNMPFQPKVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSG 657
+ NMPF+P ++W LL + R+ NT + + A I AMEP++ Y+L+SNLY+SSG
Sbjct: 567 NLMKNMPFEPDAAIWGTLLGASRVHGNTELAETAADKIFAMEPENSGMYVLLSNLYASSG 626
Query: 658 RWHNSELVREDMREKGFRKHPSRSWIIHQNKVHSFYVRDKSHPREKDIYSGLEILILECL 717
RW + +R MR+KG +K P SWI QNK H+F V D+ HP + +I++ LE L L
Sbjct: 627 RWGDVGKLRVRMRDKGVKKVPGYSWIEIQNKTHTFSVGDEFHPEKDEIFAFLEELDLRMK 686
Query: 718 KAGYVPDTSFVLHEVEEHQKKDFLFYHSAKLAATYGLLTTPAGQPVRIVKNILTCGDCHS 777
KAGYV TS VLH+VEE +K+ + YHS +LA YG++ +G+P+R++KN+ C DCH+
Sbjct: 687 KAGYVSKTSVVLHDVEEEEKERMVRYHSERLAVAYGIMRVSSGRPIRVIKNLRVCEDCHN 746
Query: 778 FLKYVSVVTRREIFLRDASGFHHFLNGQCSCKDYW 812
+KY++ +T R I LRD + FHHF +G CSC DYW
Sbjct: 747 AIKYMARITGRLIILRDNNRFHHFKDGSCSCGDYW 781
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q5G1T1|PP272_ARATH Pentatricopeptide repeat-containing protein At3g49170, chloroplastic OS=Arabidopsis thaliana GN=EMB2261 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 460 bits (1183), Expect = e-128, Method: Compositional matrix adjust.
Identities = 275/822 (33%), Positives = 439/822 (53%), Gaps = 46/822 (5%)
Query: 1 FFNSLRLSVQCGEVSLAKAIHASLIKLLLEQDTRFGNPLISAYLKLGHVADAYKIFYGL- 59
F + L+ ++ + L K +HA LI+ +E D+ N LIS Y K G A A +F +
Sbjct: 65 FSSLLKSCIRARDFRLGKLVHARLIEFDIEPDSVLYNSLISLYSKSGDSAKAEDVFETMR 124
Query: 60 --SSPNVVSFTSLISGLAKLGREEEAIELFFRMRSEGIVPNEHSFVAILTACIRLLELEL 117
+VVS++++++ GRE +AI++F G+VPN++ + A++ AC + +
Sbjct: 125 RFGKRDVVSWSAMMACYGNNGRELDAIKVFVEFLELGLVPNDYCYTAVIRACSNSDFVGV 184
Query: 118 GFQIHALIVKMGCVDS-VFVTNALMGLYGKFSFCLDYLLKLFDELPHKDTVSWNTVISSV 176
G ++K G +S V V +L+ ++ K + K+FD++ + V+W +I+
Sbjct: 185 GRVTLGFLMKTGHFESDVCVGCSLIDMFVKGENSFENAYKVFDKMSELNVVTWTLMITRC 244
Query: 177 VNEFEYEKAFELFRDMKRDNGFTVDYFTISTLLTACTGCFVLMEGRAVHAHAIRIGLGAN 236
+ +A F DM +GF D FT+S++ +AC L G+ +H+ AIR GL +
Sbjct: 245 MQMGFPREAIRFFLDMVL-SGFESDKFTLSSVFSACAELENLSLGKQLHSWAIRSGLVDD 303
Query: 237 LSVNNALIGFYTKCGRVKDVVALLERMPVMDIITLTEIIIAYMEFGYVDLAVEIFDKMPE 296
V +L+ Y KC G VD ++FD+M +
Sbjct: 304 --VECSLVDMYAKCS----------------------------ADGSVDDCRKVFDRMED 333
Query: 297 KNSVSYNALLAGYCKNGK-AMEALGLFVKLLEEGLV-LTEFTLTSVVNACGLIMEAKLSE 354
+ +S+ AL+ GY KN A EA+ LF +++ +G V FT +S ACG + + ++ +
Sbjct: 334 HSVMSWTALITGYMKNCNLATEAINLFSEMITQGHVEPNHFTFSSAFKACGNLSDPRVGK 393
Query: 355 QIHGFVMKFGLGSNDCIEAALLDMLTRCGRMADAEKMFYRWPTDRDDSIIWTSMICGYAR 414
Q+ G K GL SN + +++ M + RM DA++ F + + + + + G R
Sbjct: 394 QVLGQAFKRGLASNSSVANSVISMFVKSDRMEDAQRAFE--SLSEKNLVSYNTFLDGTCR 451
Query: 415 SGKPEHAILLFHQSQSEATVVPDEIALTSVLGVCGTLGFHEMGKQIHSYALKTGFSSDLG 474
+ E A L + +E + S+L +G G+QIHS +K G S +
Sbjct: 452 NLNFEQAFKLLSEI-TERELGVSAFTFASLLSGVANVGSIRKGEQIHSQVVKLGLSCNQP 510
Query: 475 VANSMVSMYFKCCNMSNAIKAFNKMPSHDIVSWNGLIAGHLLHRQGDEALAVWSSMEKAS 534
V N+++SMY KC ++ A + FN M + +++SW +I G H L ++ M +
Sbjct: 511 VCNALISMYSKCGSIDTASRVFNFMENRNVISWTSMITGFAKHGFAIRVLETFNQMIEEG 570
Query: 535 IKPDAITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLE 594
+KP+ +T+V I+SA +++ LV + F SM + I+P EHYA +V +L G L
Sbjct: 571 VKPNEVTYVAILSAC--SHVGLVSEGWRHFNSMYEDHKIKPKMEHYACMVDLLCRAGLLT 628
Query: 595 EAEETINNMPFQPKVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYS 654
+A E IN MPFQ V VWR L +CR+ NT +GK A+ IL ++P +PA YI +SN+Y+
Sbjct: 629 DAFEFINTMPFQADVLVWRTFLGACRVHSNTELGKLAARKILELDPNEPAAYIQLSNIYA 688
Query: 655 SSGRWHNSELVREDMREKGFRKHPSRSWIIHQNKVHSFYVRDKSHPREKDIYSGLEILIL 714
+G+W S +R M+E+ K SWI +K+H FYV D +HP IY L+ LI
Sbjct: 689 CAGKWEESTEMRRKMKERNLVKEGGCSWIEVGDKIHKFYVGDTAHPNAHQIYDELDRLIT 748
Query: 715 ECLKAGYVPDTSFVLHEVEEHQKKD----FLFYHSAKLAATYGLLTTPAGQPVRIVKNIL 770
E + GYVPDT VLH++EE + L+ HS K+A +GL++T +PVR+ KN+
Sbjct: 749 EIKRCGYVPDTDLVLHKLEEENDEAEKERLLYQHSEKIAVAFGLISTSKSRPVRVFKNLR 808
Query: 771 TCGDCHSFLKYVSVVTRREIFLRDASGFHHFLNGQCSCKDYW 812
CGDCH+ +KY+S V+ REI LRD + FHHF +G+CSC DYW
Sbjct: 809 VCGDCHNAMKYISTVSGREIVLRDLNRFHHFKDGKCSCNDYW 850
|
May play a role in embryogenesis. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LYV3|PP377_ARATH Putative pentatricopeptide repeat-containing protein At5g13230, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H89 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 458 bits (1178), Expect = e-127, Method: Compositional matrix adjust.
Identities = 268/811 (33%), Positives = 432/811 (53%), Gaps = 47/811 (5%)
Query: 5 LRLSVQCGEVSLAKAIHASLIKLLLEQDTRFGNPLISAYLKLGHVADAYKIFYGLSSPNV 64
LR +Q + AKAIH ++K D N L++AY+K G DA +F + N
Sbjct: 56 LRRCIQKNDPISAKAIHCDILKKGSCLDLFATNILLNAYVKAGFDKDALNLFDEMPERNN 115
Query: 65 VSFTSLISGLAKLGREEEAIELFFRMRSEGIVPNEHSFVAILTACIRLLELELGFQIHAL 124
VSF +L G A ++ I L+ R+ EG N H F + L + L + E+ +H+
Sbjct: 116 VSFVTLAQGYAC----QDPIGLYSRLHREGHELNPHVFTSFLKLFVSLDKAEICPWLHSP 171
Query: 125 IVKMGCVDSVFVTNALMGLYGKFSFC--LDYLLKLFDELPHKDTVSWNTVISSVVNEFEY 182
IVK+G + FV AL+ Y S C +D +F+ + KD V W ++S V +
Sbjct: 172 IVKLGYDSNAFVGAALINAY---SVCGSVDSARTVFEGILCKDIVVWAGIVSCYVENGYF 228
Query: 183 EKAFELFRDMKRDNGFTVDYFTISTLLTACTGCFVLMEGRAVHAHAIRIGLGANLSVNNA 242
E + +L M R GF + +T T L A G + VH ++ + V
Sbjct: 229 EDSLKLLSCM-RMAGFMPNNYTFDTALKASIGLGAFDFAKGVHGQILKTCYVLDPRVGVG 287
Query: 243 LIGFYTKCGRVKDVVALLERMPVMDIITLTEIIIAYMEFGYVDLAVEIFDKMPEKNSVSY 302
L+ YT+ G + D A ++F++MP+ + V +
Sbjct: 288 LLQLYTQLGDMSD-------------------------------AFKVFNEMPKNDVVPW 316
Query: 303 NALLAGYCKNGKAMEALGLFVKLLEEGLVLTEFTLTSVVNACGLIMEAKLSEQIHGFVMK 362
+ ++A +C+NG EA+ LF+++ E +V EFTL+S++N C + + L EQ+HG V+K
Sbjct: 317 SFMIARFCQNGFCNEAVDLFIRMREAFVVPNEFTLSSILNGCAIGKCSGLGEQLHGLVVK 376
Query: 363 FGLGSNDCIEAALLDMLTRCGRMADAEKMFYRWPTDRDDSIIWTSMICGYARSGKPEHAI 422
G + + AL+D+ +C +M A K+F + + + W ++I GY G+ A
Sbjct: 377 VGFDLDIYVSNALIDVYAKCEKMDTAVKLFAELSSKNE--VSWNTVIVGYENLGEGGKAF 434
Query: 423 LLFHQSQSEATVVPDEIALTSVLGVCGTLGFHEMGKQIHSYALKTGFSSDLGVANSMVSM 482
+F ++ V E+ +S LG C +L ++G Q+H A+KT + + V+NS++ M
Sbjct: 435 SMFREALRNQVSVT-EVTFSSALGACASLASMDLGVQVHGLAIKTNNAKKVAVSNSLIDM 493
Query: 483 YFKCCNMSNAIKAFNKMPSHDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDAITF 542
Y KC ++ A FN+M + D+ SWN LI+G+ H G +AL + M+ KP+ +TF
Sbjct: 494 YAKCGDIKFAQSVFNEMETIDVASWNALISGYSTHGLGRQALRILDIMKDRDCKPNGLTF 553
Query: 543 VLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLEEAEETINN 602
+ ++S +N L+D ++ F SM + IEP EHY +V +LG G L++A + I
Sbjct: 554 LGVLSGC--SNAGLIDQGQECFESMIRDHGIEPCLEHYTCMVRLLGRSGQLDKAMKLIEG 611
Query: 603 MPFQPKVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWHNS 662
+P++P V +WRA+L + + N +R A+ IL + P+D ATY+LVSN+Y+ + +W N
Sbjct: 612 IPYEPSVMIWRAMLSASMNQNNEEFARRSAEEILKINPKDEATYVLVSNMYAGAKQWANV 671
Query: 663 ELVREDMREKGFRKHPSRSWIIHQNKVHSFYVRDKSHPREKDIYSGLEILILECLKAGYV 722
+R+ M+E G +K P SWI HQ VH F V HP K I LE L ++ +AGYV
Sbjct: 672 ASIRKSMKEMGVKKEPGLSWIEHQGDVHYFSVGLSDHPDMKLINGMLEWLNMKATRAGYV 731
Query: 723 PDTSFVLHEVEEHQKKDFLFYHSAKLAATYGLLTTPAGQP-VRIVKNILTCGDCHSFLKY 781
PD + VL ++++ +K L+ HS +LA YGL+ P+ + + I+KN+ C DCHS +K
Sbjct: 732 PDRNAVLLDMDDEEKDKRLWVHSERLALAYGLVRMPSSRNRILIMKNLRICSDCHSAMKV 791
Query: 782 VSVVTRREIFLRDASGFHHFLNGQCSCKDYW 812
+S + +R++ +RD + FHHF G CSC D+W
Sbjct: 792 ISSIVQRDLVIRDMNRFHHFHAGVCSCGDHW 822
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q3E6Q1|PPR32_ARATH Pentatricopeptide repeat-containing protein At1g11290 OS=Arabidopsis thaliana GN=PCMP-H40 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 456 bits (1174), Expect = e-127, Method: Compositional matrix adjust.
Identities = 258/803 (32%), Positives = 426/803 (53%), Gaps = 39/803 (4%)
Query: 10 QCGEVSLAKAIHASLIKLLLEQDTRFGNPLISAYLKLGHVADAYKIFYGLSSPNVVSFTS 69
+C + + I + K L Q+ F L+S + + G V +A ++F + S V + +
Sbjct: 46 RCSSLKELRQILPLVFKNGLYQEHFFQTKLVSLFCRYGSVDEAARVFEPIDSKLNVLYHT 105
Query: 70 LISGLAKLGREEEAIELFFRMRSEGIVPNEHSFVAILTACIRLLELELGFQIHALIVKMG 129
++ G AK+ ++A++ F RMR + + P ++F +L C EL +G +IH L+VK G
Sbjct: 106 MLKGFAKVSDLDKALQFFVRMRYDDVEPVVYNFTYLLKVCGDEAELRVGKEIHGLLVKSG 165
Query: 130 CVDSVFVTNALMGLYGKFSFCLDYLLKLFDELPHKDTVSWNTVISSVVNEFEYEKAFELF 189
+F L +Y K ++ K+FD +P +D VSWNT+++ A E+
Sbjct: 166 FSLDLFAMTGLENMYAKCR-QVNEARKVFDRMPERDLVSWNTIVAGYSQNGMARMALEMV 224
Query: 190 RDMKRDNGFTVDYFTISTLLTACTGCFVLMEGRAVHAHAIRIGLGANLSVNNALIGFYTK 249
+ M +N + TI ++L A + ++ G+ +H +A+R G + ++++ AL+ Y K
Sbjct: 225 KSMCEEN-LKPSFITIVSVLPAVSALRLISVGKEIHGYAMRSGFDSLVNISTALVDMYAK 283
Query: 250 CGRVKDVVALLERMPVMDIITLTEIIIAYMEFGYVDLAVEIFDKMPEKNSVSYNALLAGY 309
CG + + A ++FD M E+N VS+N+++ Y
Sbjct: 284 CGSL-------------------------------ETARQLFDGMLERNVVSWNSMIDAY 312
Query: 310 CKNGKAMEALGLFVKLLEEGLVLTEFTLTSVVNACGLIMEAKLSEQIHGFVMKFGLGSND 369
+N EA+ +F K+L+EG+ T+ ++ ++AC + + + IH ++ GL N
Sbjct: 313 VQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIHKLSVELGLDRNV 372
Query: 370 CIEAALLDMLTRCGRMADAEKMFYRWPTDRDDSIIWTSMICGYARSGKPEHAILLFHQSQ 429
+ +L+ M +C + A MF + + + W +MI G+A++G+P A+ F Q +
Sbjct: 373 SVVNSLISMYCKCKEVDTAASMFGKLQSR--TLVSWNAMILGFAQNGRPIDALNYFSQMR 430
Query: 430 SEATVVPDEIALTSVLGVCGTLGFHEMGKQIHSYALKTGFSSDLGVANSMVSMYFKCCNM 489
S TV PD SV+ L K IH +++ ++ V ++V MY KC +
Sbjct: 431 SR-TVKPDTFTYVSVITAIAELSITHHAKWIHGVVMRSCLDKNVFVTTALVDMYAKCGAI 489
Query: 490 SNAIKAFNKMPSHDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDAITFVLIISAY 549
A F+ M + +WN +I G+ H G AL ++ M+K +IKP+ +TF+ +ISA
Sbjct: 490 MIARLIFDMMSERHVTTWNAMIDGYGTHGFGKAALELFEEMQKGTIKPNGVTFLSVISAC 549
Query: 550 RYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLEEAEETINNMPFQPKV 609
++ L V++ K F MK Y+IE + +HY ++V +LG G L EA + I MP +P V
Sbjct: 550 SHSGL--VEAGLKCFYMMKENYSIELSMDHYGAMVDLLGRAGRLNEAWDFIMQMPVKPAV 607
Query: 610 SVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWHNSELVREDM 669
+V+ A+L +C+I N ++ A+ + + P D ++L++N+Y ++ W VR M
Sbjct: 608 NVYGAMLGACQIHKNVNFAEKAAERLFELNPDDGGYHVLLANIYRAASMWEKVGQVRVSM 667
Query: 670 REKGFRKHPSRSWIIHQNKVHSFYVRDKSHPREKDIYSGLEILILECLKAGYVPDTSFVL 729
+G RK P S + +N+VHSF+ +HP K IY+ LE LI +AGYVPDT+ VL
Sbjct: 668 LRQGLRKTPGCSMVEIKNEVHSFFSGSTAHPDSKKIYAFLEKLICHIKEAGYVPDTNLVL 727
Query: 730 HEVEEHQKKDFLFYHSAKLAATYGLLTTPAGQPVRIVKNILTCGDCHSFLKYVSVVTRRE 789
VE K+ L HS KLA ++GLL T AG + + KN+ C DCH+ KY+S+VT RE
Sbjct: 728 -GVENDVKEQLLSTHSEKLAISFGLLNTTAGTTIHVRKNLRVCADCHNATKYISLVTGRE 786
Query: 790 IFLRDASGFHHFLNGQCSCKDYW 812
I +RD FHHF NG CSC DYW
Sbjct: 787 IVVRDMQRFHHFKNGACSCGDYW 809
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9ZUW3|PP172_ARATH Pentatricopeptide repeat-containing protein At2g27610 OS=Arabidopsis thaliana GN=PCMP-H60 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 454 bits (1167), Expect = e-126, Method: Compositional matrix adjust.
Identities = 265/815 (32%), Positives = 433/815 (53%), Gaps = 45/815 (5%)
Query: 1 FFNSLRLSVQCGEVSLAKAIHASLIKLLLEQDTRFGNPLISAYLKLGHVADAYKIFYGLS 60
F + L++S + + +H IK D G L+ Y+K + D K+F +
Sbjct: 96 FSSVLKVSATLCDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRKVFDEMK 155
Query: 61 SPNVVSFTSLISGLAKLGREEEAIELFFRMRSEGIVPNEHSFVAILTACIRLLELELGFQ 120
NVV++T+LISG A+ +E + LF RM++EG PN +F A L G Q
Sbjct: 156 ERNVVTWTTLISGYARNSMNDEVLTLFMRMQNEGTQPNSFTFAAALGVLAEEGVGGRGLQ 215
Query: 121 IHALIVKMGCVDSVFVTNALMGLYGKFSFCLDYLLKLFDELPHKDTVSWNTVISS-VVNE 179
+H ++VK G ++ V+N+L+ LY K + LFD+ K V+WN++IS N
Sbjct: 216 VHTVVVKNGLDKTIPVSNSLINLYLKCGNVRKARI-LFDKTEVKSVVTWNSMISGYAANG 274
Query: 180 FEYEKAFELFRDMKRDNGFTVDYFTISTLLTACTGCFVLMEGRAVHAHAIRIGLGANLSV 239
+ E A +F M R N + + ++++ C L +H ++ G + ++
Sbjct: 275 LDLE-ALGMFYSM-RLNYVRLSESSFASVIKLCANLKELRFTEQLHCSVVKYGFLFDQNI 332
Query: 240 NNALIGFYTKCGRVKDVVALLERMPVMDIITLTEIIIAYMEFGYVDLAVEIFDKMPEKNS 299
AL+ Y+KC + D + L + E G V N
Sbjct: 333 RTALMVAYSKCTAMLDALRL------------------FKEIGCVG------------NV 362
Query: 300 VSYNALLAGYCKNGKAMEALGLFVKLLEEGLVLTEFTLTSVVNACGLIMEAKLSEQIHGF 359
VS+ A+++G+ +N EA+ LF ++ +G+ EFT + ++ A +I + ++H
Sbjct: 363 VSWTAMISGFLQNDGKEEAVDLFSEMKRKGVRPNEFTYSVILTALPVISPS----EVHAQ 418
Query: 360 VMKFGLGSNDCIEAALLDMLTRCGRMADAEKMFYRWPTDRDDSIIWTSMICGYARSGKPE 419
V+K + + ALLD + G++ +A K+F D D + W++M+ GYA++G+ E
Sbjct: 419 VVKTNYERSSTVGTALLDAYVKLGKVEEAAKVFS--GIDDKDIVAWSAMLAGYAQTGETE 476
Query: 420 HAILLFHQSQSEATVVPDEIALTSVLGVCG-TLGFHEMGKQIHSYALKTGFSSDLGVANS 478
AI +F + ++ + P+E +S+L VC T GKQ H +A+K+ S L V+++
Sbjct: 477 AAIKMFGE-LTKGGIKPNEFTFSSILNVCAATNASMGQGKQFHGFAIKSRLDSSLCVSSA 535
Query: 479 MVSMYFKCCNMSNAIKAFNKMPSHDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPD 538
+++MY K N+ +A + F + D+VSWN +I+G+ H Q +AL V+ M+K +K D
Sbjct: 536 LLTMYAKKGNIESAEEVFKRQREKDLVSWNSMISGYAQHGQAMKALDVFKEMKKRKVKMD 595
Query: 539 AITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLEEAEE 598
+TF+ + +A T+ LV+ K F M I PT EH + +V + G LE+A +
Sbjct: 596 GVTFIGVFAAC--THAGLVEEGEKYFDIMVRDCKIAPTKEHNSCMVDLYSRAGQLEKAMK 653
Query: 599 TINNMPFQPKVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGR 658
I NMP ++WR +L +CR+ T +G+ A+ I+AM+P+D A Y+L+SN+Y+ SG
Sbjct: 654 VIENMPNPAGSTIWRTILAACRVHKKTELGRLAAEKIIAMKPEDSAAYVLLSNMYAESGD 713
Query: 659 WHNSELVREDMREKGFRKHPSRSWIIHQNKVHSFYVRDKSHPREKDIYSGLEILILECLK 718
W VR+ M E+ +K P SWI +NK +SF D+SHP + IY LE L
Sbjct: 714 WQERAKVRKLMNERNVKKEPGYSWIEVKNKTYSFLAGDRSHPLKDQIYMKLEDLSTRLKD 773
Query: 719 AGYVPDTSFVLHEVEEHQKKDFLFYHSAKLAATYGLLTTPAGQPVRIVKNILTCGDCHSF 778
GY PDTS+VL ++++ K+ L HS +LA +GL+ TP G P+ I+KN+ CGDCH
Sbjct: 774 LGYEPDTSYVLQDIDDEHKEAVLAQHSERLAIAFGLIATPKGSPLLIIKNLRVCGDCHLV 833
Query: 779 LKYVSVVTRREIFLRDASGFHHF-LNGQCSCKDYW 812
+K ++ + REI +RD++ FHHF +G CSC D+W
Sbjct: 834 IKLIAKIEEREIVVRDSNRFHHFSSDGVCSCGDFW 868
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SHZ8|PP168_ARATH Pentatricopeptide repeat-containing protein At2g22070 OS=Arabidopsis thaliana GN=PCMP-H41 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 452 bits (1162), Expect = e-126, Method: Compositional matrix adjust.
Identities = 259/788 (32%), Positives = 422/788 (53%), Gaps = 77/788 (9%)
Query: 97 PNEHSFVAILTACIRLLELELGFQ--------IHALIVKMGCVDSVFVTNALMGLYGKFS 148
P S +L C LL+ + +H ++K G + SV++ N LM +Y K
Sbjct: 4 PVPLSLSTLLELCTNLLQKSVNKSNGRFTAQLVHCRVIKSGLMFSVYLMNNLMNVYSKTG 63
Query: 149 FCL------------------------------DYLLKLFDELPHKDTVSWNTVISSVVN 178
+ L D + FD+LP +D+VSW T+I N
Sbjct: 64 YALHARKLFDEMPLRTAFSWNTVLSAYSKRGDMDSTCEFFDQLPQRDSVSWTTMIVGYKN 123
Query: 179 EFEYEKAFELFRDMKRDNGFTVDYFTISTLLTACTGCFVLMEGRAVHAHAIRIGLGANLS 238
+Y KA + DM ++ G FT++ +L + + G+ VH+ +++GL N+S
Sbjct: 124 IGQYHKAIRVMGDMVKE-GIEPTQFTLTNVLASVAATRCMETGKKVHSFIVKLGLRGNVS 182
Query: 239 VNNALIGFYTKCGRVKDVVALLERMPVMDIITLTEIIIAYMEFGYVDLAVEIFDKMPEKN 298
V+N+L+ Y KCG + +RM V DI + +I +M+ G +DLA+ F++M E++
Sbjct: 183 VSNSLLNMYAKCGDPMMAKFVFDRMVVRDISSWNAMIALHMQVGQMDLAMAQFEQMAERD 242
Query: 299 SVSYNALLAGYCKNGKAMEALGLFVKLLEEGLVLTE-FTLTSVVNACGLIMEAKLSEQIH 357
V++N++++G+ + G + AL +F K+L + L+ + FTL SV++AC + + + +QIH
Sbjct: 243 IVTWNSMISGFNQRGYDLRALDIFSKMLRDSLLSPDRFTLASVLSACANLEKLCIGKQIH 302
Query: 358 GFVMKFGLGSNDCIEAALLDMLTRCGRMADAEKMFYRWPT-------------------- 397
++ G + + AL+ M +RCG + A ++ + T
Sbjct: 303 SHIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGD 362
Query: 398 ------------DRDDSIIWTSMICGYARSGKPEHAILLFHQSQSEATVVPDEIALTSVL 445
DR D + WT+MI GY + G AI LF +S P+ L ++L
Sbjct: 363 MNQAKNIFVSLKDR-DVVAWTAMIVGYEQHGSYGEAINLF-RSMVGGGQRPNSYTLAAML 420
Query: 446 GVCGTLGFHEMGKQIHSYALKTGFSSDLGVANSMVSMYFKCCNMSNAIKAFNKMP-SHDI 504
V +L GKQIH A+K+G + V+N++++MY K N+++A +AF+ + D
Sbjct: 421 SVASSLASLSHGKQIHGSAVKSGEIYSVSVSNALITMYAKAGNITSASRAFDLIRCERDT 480
Query: 505 VSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDAITFVLIISAYRYTNLNLVDSCRKLF 564
VSW +I H +EAL ++ +M ++PD IT+V + SA T+ LV+ R+ F
Sbjct: 481 VSWTSMIIALAQHGHAEEALELFETMLMEGLRPDHITYVGVFSA--CTHAGLVNQGRQYF 538
Query: 565 LSMKTIYNIEPTSEHYASLVSVLGYWGFLEEAEETINNMPFQPKVSVWRALLDSCRIRLN 624
MK + I PT HYA +V + G G L+EA+E I MP +P V W +LL +CR+ N
Sbjct: 539 DMMKDVDKIIPTLSHYACMVDLFGRAGLLQEAQEFIEKMPIEPDVVTWGSLLSACRVHKN 598
Query: 625 TTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWHNSELVREDMREKGFRKHPSRSWII 684
+GK A+ +L +EP++ Y ++NLYS+ G+W + +R+ M++ +K SWI
Sbjct: 599 IDLGKVAAERLLLLEPENSGAYSALANLYSACGKWEEAAKIRKSMKDGRVKKEQGFSWIE 658
Query: 685 HQNKVHSFYVRDKSHPREKDIYSGLEILILECLKAGYVPDTSFVLHEVEEHQKKDFLFYH 744
++KVH F V D +HP + +IY ++ + E K GYVPDT+ VLH++EE K+ L +H
Sbjct: 659 VKHKVHVFGVEDGTHPEKNEIYMTMKKIWDEIKKMGYVPDTASVLHDLEEEVKEQILRHH 718
Query: 745 SAKLAATYGLLTTPAGQPVRIVKNILTCGDCHSFLKYVSVVTRREIFLRDASGFHHFLNG 804
S KLA +GL++TP +RI+KN+ C DCH+ +K++S + REI +RD + FHHF +G
Sbjct: 719 SEKLAIAFGLISTPDKTTLRIMKNLRVCNDCHTAIKFISKLVGREIIVRDTTRFHHFKDG 778
Query: 805 QCSCKDYW 812
CSC+DYW
Sbjct: 779 FCSCRDYW 786
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 812 | ||||||
| 225441064 | 882 | PREDICTED: pentatricopeptide repeat-cont | 0.990 | 0.911 | 0.707 | 0.0 | |
| 297740028 | 900 | unnamed protein product [Vitis vinifera] | 0.990 | 0.893 | 0.707 | 0.0 | |
| 224140235 | 915 | predicted protein [Populus trichocarpa] | 0.996 | 0.884 | 0.677 | 0.0 | |
| 449451241 | 908 | PREDICTED: pentatricopeptide repeat-cont | 0.995 | 0.889 | 0.623 | 0.0 | |
| 449482566 | 908 | PREDICTED: pentatricopeptide repeat-cont | 0.995 | 0.889 | 0.622 | 0.0 | |
| 297810463 | 896 | EMB175 [Arabidopsis lyrata subsp. lyrata | 0.998 | 0.905 | 0.608 | 0.0 | |
| 79506598 | 896 | pentatricopeptide repeat-containing prot | 0.998 | 0.905 | 0.601 | 0.0 | |
| 356503769 | 874 | PREDICTED: pentatricopeptide repeat-cont | 0.992 | 0.922 | 0.595 | 0.0 | |
| 7406390 | 837 | putative protein [Arabidopsis thaliana] | 0.927 | 0.899 | 0.599 | 0.0 | |
| 147843478 | 755 | hypothetical protein VITISV_016431 [Viti | 0.831 | 0.894 | 0.538 | 0.0 |
| >gi|225441064|ref|XP_002277923.1| PREDICTED: pentatricopeptide repeat-containing protein At5g03800-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1201 bits (3106), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 572/808 (70%), Positives = 677/808 (83%), Gaps = 4/808 (0%)
Query: 5 LRLSVQCGEVSLAKAIHASLIKLLLEQDTRFGNPLISAYLKLGHVADAYKIFYGLSSPNV 64
L LSV+ +V L KA+HAS+ KL +D N LI AYLKLG V +AYK+F GLS PNV
Sbjct: 79 LDLSVRYDDVELIKAVHASIFKL--AEDIHLANALIVAYLKLGMVPNAYKVFVGLSCPNV 136
Query: 65 VSFTSLISGLAKLGREEEAIELFFRMRSEGIVPNEHSFVAILTACIRLLELELGFQIHAL 124
VS+T++ISG AK RE +A+E+FFRMRS GI NE SFVAILT CIRLL+LELG Q+HA+
Sbjct: 137 VSYTAMISGFAKSNRERQAMEIFFRMRSSGIELNEFSFVAILTVCIRLLDLELGCQLHAI 196
Query: 125 IVKMGCVDSVFVTNALMGLYGKFSFCLDYLLKLFDELPHKDTVSWNTVISSVVNEFEYEK 184
++KMG ++ FV+NALMGLYGK + LD +L+LFDE+PH+D SWNTVISSVV E YE+
Sbjct: 197 VIKMGFLNYTFVSNALMGLYGKCGY-LDSVLQLFDEMPHRDIASWNTVISSVVKEMMYER 255
Query: 185 AFELFRDMKRDNGFTVDYFTISTLLTACTGCFVLMEGRAVHAHAIRIGLGANLSVNNALI 244
AFELFRDM+R +GF +D+FT+ST+L A G M GR +HAH I+IG +N+SV NALI
Sbjct: 256 AFELFRDMRRIDGFRIDHFTLSTILVAARG-LASMVGREIHAHVIKIGFESNISVINALI 314
Query: 245 GFYTKCGRVKDVVALLERMPVMDIITLTEIIIAYMEFGYVDLAVEIFDKMPEKNSVSYNA 304
FYTKCG +K VVAL E+M V D+IT TE+I AYMEFG DLA+E+FDKMP +NS+SYNA
Sbjct: 315 RFYTKCGSIKHVVALFEKMRVRDVITWTEMITAYMEFGLTDLALEVFDKMPARNSISYNA 374
Query: 305 LLAGYCKNGKAMEALGLFVKLLEEGLVLTEFTLTSVVNACGLIMEAKLSEQIHGFVMKFG 364
+L+G+C+NG+ +AL F +++EEG+ LT+FTLT V+NACGL+MEAK+S+QIHGF++KFG
Sbjct: 375 ILSGFCQNGEGSKALAFFCRMVEEGVELTDFTLTGVLNACGLLMEAKISKQIHGFILKFG 434
Query: 365 LGSNDCIEAALLDMLTRCGRMADAEKMFYRWPTDRDDSIIWTSMICGYARSGKPEHAILL 424
GSN CIEAALLDM TRCGRMADA+KMF + + SIIWTSMICGYAR+ +PE AI L
Sbjct: 435 FGSNACIEAALLDMCTRCGRMADAQKMFSQGSFSQSGSIIWTSMICGYARNAQPEEAISL 494
Query: 425 FHQSQSEATVVPDEIALTSVLGVCGTLGFHEMGKQIHSYALKTGFSSDLGVANSMVSMYF 484
F QSQ E +V D++A T+VLGVCGTL FHEMGKQIH +ALK+GF SDLGV NS+++MY
Sbjct: 495 FCQSQLEGAMVVDKVASTAVLGVCGTLAFHEMGKQIHCHALKSGFLSDLGVGNSIITMYS 554
Query: 485 KCCNMSNAIKAFNKMPSHDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDAITFVL 544
KC NM +AIK FN MP+HDIVSWNGLIAGHLLHRQGDEAL+VWS MEKA IKPD +TFVL
Sbjct: 555 KCSNMDDAIKVFNVMPAHDIVSWNGLIAGHLLHRQGDEALSVWSKMEKAGIKPDTVTFVL 614
Query: 545 IISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLEEAEETINNMP 604
IISAYR+TN NLVD+CR+LFLSMKTIY+I+PT EHY SLV VLGYWG LEEAEE IN MP
Sbjct: 615 IISAYRHTNSNLVDNCRRLFLSMKTIYHIDPTVEHYTSLVGVLGYWGLLEEAEEMINKMP 674
Query: 605 FQPKVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWHNSEL 664
+P+ SVWRALLD+CRI NTTIGKR AKH+LAM+P DP+TYILVSNLYS+ GRWH S++
Sbjct: 675 IEPEASVWRALLDACRIHSNTTIGKRAAKHLLAMKPLDPSTYILVSNLYSAYGRWHCSDM 734
Query: 665 VREDMREKGFRKHPSRSWIIHQNKVHSFYVRDKSHPREKDIYSGLEILILECLKAGYVPD 724
VRE+MR KGFRKHP RSWIIH+NKVHSFY RDKSHP+ KDI+SGLE+LI+ECLKAGYVPD
Sbjct: 735 VREEMRVKGFRKHPGRSWIIHENKVHSFYARDKSHPQAKDIHSGLELLIMECLKAGYVPD 794
Query: 725 TSFVLHEVEEHQKKDFLFYHSAKLAATYGLLTTPAGQPVRIVKNILTCGDCHSFLKYVSV 784
TSFVLHEVEEHQKKDFLFYHSAK+AATYGLL T G+P+RIVKNIL CGDCH+FLKYVS+
Sbjct: 795 TSFVLHEVEEHQKKDFLFYHSAKIAATYGLLMTRPGRPIRIVKNILLCGDCHTFLKYVSI 854
Query: 785 VTRREIFLRDASGFHHFLNGQCSCKDYW 812
VT REIFLRDASG H FLNGQCSCKDYW
Sbjct: 855 VTGREIFLRDASGHHCFLNGQCSCKDYW 882
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297740028|emb|CBI30210.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1199 bits (3103), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 572/808 (70%), Positives = 677/808 (83%), Gaps = 4/808 (0%)
Query: 5 LRLSVQCGEVSLAKAIHASLIKLLLEQDTRFGNPLISAYLKLGHVADAYKIFYGLSSPNV 64
L LSV+ +V L KA+HAS+ KL +D N LI AYLKLG V +AYK+F GLS PNV
Sbjct: 97 LDLSVRYDDVELIKAVHASIFKL--AEDIHLANALIVAYLKLGMVPNAYKVFVGLSCPNV 154
Query: 65 VSFTSLISGLAKLGREEEAIELFFRMRSEGIVPNEHSFVAILTACIRLLELELGFQIHAL 124
VS+T++ISG AK RE +A+E+FFRMRS GI NE SFVAILT CIRLL+LELG Q+HA+
Sbjct: 155 VSYTAMISGFAKSNRERQAMEIFFRMRSSGIELNEFSFVAILTVCIRLLDLELGCQLHAI 214
Query: 125 IVKMGCVDSVFVTNALMGLYGKFSFCLDYLLKLFDELPHKDTVSWNTVISSVVNEFEYEK 184
++KMG ++ FV+NALMGLYGK + LD +L+LFDE+PH+D SWNTVISSVV E YE+
Sbjct: 215 VIKMGFLNYTFVSNALMGLYGKCGY-LDSVLQLFDEMPHRDIASWNTVISSVVKEMMYER 273
Query: 185 AFELFRDMKRDNGFTVDYFTISTLLTACTGCFVLMEGRAVHAHAIRIGLGANLSVNNALI 244
AFELFRDM+R +GF +D+FT+ST+L A G M GR +HAH I+IG +N+SV NALI
Sbjct: 274 AFELFRDMRRIDGFRIDHFTLSTILVAARG-LASMVGREIHAHVIKIGFESNISVINALI 332
Query: 245 GFYTKCGRVKDVVALLERMPVMDIITLTEIIIAYMEFGYVDLAVEIFDKMPEKNSVSYNA 304
FYTKCG +K VVAL E+M V D+IT TE+I AYMEFG DLA+E+FDKMP +NS+SYNA
Sbjct: 333 RFYTKCGSIKHVVALFEKMRVRDVITWTEMITAYMEFGLTDLALEVFDKMPARNSISYNA 392
Query: 305 LLAGYCKNGKAMEALGLFVKLLEEGLVLTEFTLTSVVNACGLIMEAKLSEQIHGFVMKFG 364
+L+G+C+NG+ +AL F +++EEG+ LT+FTLT V+NACGL+MEAK+S+QIHGF++KFG
Sbjct: 393 ILSGFCQNGEGSKALAFFCRMVEEGVELTDFTLTGVLNACGLLMEAKISKQIHGFILKFG 452
Query: 365 LGSNDCIEAALLDMLTRCGRMADAEKMFYRWPTDRDDSIIWTSMICGYARSGKPEHAILL 424
GSN CIEAALLDM TRCGRMADA+KMF + + SIIWTSMICGYAR+ +PE AI L
Sbjct: 453 FGSNACIEAALLDMCTRCGRMADAQKMFSQGSFSQSGSIIWTSMICGYARNAQPEEAISL 512
Query: 425 FHQSQSEATVVPDEIALTSVLGVCGTLGFHEMGKQIHSYALKTGFSSDLGVANSMVSMYF 484
F QSQ E +V D++A T+VLGVCGTL FHEMGKQIH +ALK+GF SDLGV NS+++MY
Sbjct: 513 FCQSQLEGAMVVDKVASTAVLGVCGTLAFHEMGKQIHCHALKSGFLSDLGVGNSIITMYS 572
Query: 485 KCCNMSNAIKAFNKMPSHDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDAITFVL 544
KC NM +AIK FN MP+HDIVSWNGLIAGHLLHRQGDEAL+VWS MEKA IKPD +TFVL
Sbjct: 573 KCSNMDDAIKVFNVMPAHDIVSWNGLIAGHLLHRQGDEALSVWSKMEKAGIKPDTVTFVL 632
Query: 545 IISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLEEAEETINNMP 604
IISAYR+TN NLVD+CR+LFLSMKTIY+I+PT EHY SLV VLGYWG LEEAEE IN MP
Sbjct: 633 IISAYRHTNSNLVDNCRRLFLSMKTIYHIDPTVEHYTSLVGVLGYWGLLEEAEEMINKMP 692
Query: 605 FQPKVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWHNSEL 664
+P+ SVWRALLD+CRI NTTIGKR AKH+LAM+P DP+TYILVSNLYS+ GRWH S++
Sbjct: 693 IEPEASVWRALLDACRIHSNTTIGKRAAKHLLAMKPLDPSTYILVSNLYSAYGRWHCSDM 752
Query: 665 VREDMREKGFRKHPSRSWIIHQNKVHSFYVRDKSHPREKDIYSGLEILILECLKAGYVPD 724
VRE+MR KGFRKHP RSWIIH+NKVHSFY RDKSHP+ KDI+SGLE+LI+ECLKAGYVPD
Sbjct: 753 VREEMRVKGFRKHPGRSWIIHENKVHSFYARDKSHPQAKDIHSGLELLIMECLKAGYVPD 812
Query: 725 TSFVLHEVEEHQKKDFLFYHSAKLAATYGLLTTPAGQPVRIVKNILTCGDCHSFLKYVSV 784
TSFVLHEVEEHQKKDFLFYHSAK+AATYGLL T G+P+RIVKNIL CGDCH+FLKYVS+
Sbjct: 813 TSFVLHEVEEHQKKDFLFYHSAKIAATYGLLMTRPGRPIRIVKNILLCGDCHTFLKYVSI 872
Query: 785 VTRREIFLRDASGFHHFLNGQCSCKDYW 812
VT REIFLRDASG H FLNGQCSCKDYW
Sbjct: 873 VTGREIFLRDASGHHCFLNGQCSCKDYW 900
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224140235|ref|XP_002323489.1| predicted protein [Populus trichocarpa] gi|222868119|gb|EEF05250.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1180 bits (3053), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 550/812 (67%), Positives = 672/812 (82%), Gaps = 3/812 (0%)
Query: 1 FFNSLRLSVQCGEVSLAKAIHASLIKLLLEQDTRFGNPLISAYLKLGHVADAYKIFYGLS 60
FN LRLSV+ ++ LA+A+HAS++KL +DT GN +I+AY+KLG V DAY++F G+S
Sbjct: 107 LFNLLRLSVKYTDIDLARALHASILKL--GEDTHLGNAVIAAYIKLGLVVDAYEVFMGMS 164
Query: 61 SPNVVSFTSLISGLAKLGREEEAIELFFRMRSEGIVPNEHSFVAILTACIRLLELELGFQ 120
+P+VVS+++LIS +KL RE EAI+LFFRMR GI PNE+SFVAILTACIR LELE+G Q
Sbjct: 165 TPDVVSYSALISSFSKLNRETEAIQLFFRMRISGIEPNEYSFVAILTACIRSLELEMGLQ 224
Query: 121 IHALIVKMGCVDSVFVTNALMGLYGKFSFCLDYLLKLFDELPHKDTVSWNTVISSVVNEF 180
+HAL +K+G VFV NAL+GLYGK CLD+ + LFDE+P +D SWNT+ISS+V
Sbjct: 225 VHALAIKLGYSQLVFVANALIGLYGKCG-CLDHAIHLFDEMPQRDIASWNTMISSLVKGL 283
Query: 181 EYEKAFELFRDMKRDNGFTVDYFTISTLLTACTGCFVLMEGRAVHAHAIRIGLGANLSVN 240
YEKA ELFR + ++ GF D FT+STLLTAC C ++GR +HA+AIRIGL NLSV+
Sbjct: 284 SYEKALELFRVLNQNKGFKADQFTLSTLLTACARCHARIQGREIHAYAIRIGLENNLSVS 343
Query: 241 NALIGFYTKCGRVKDVVALLERMPVMDIITLTEIIIAYMEFGYVDLAVEIFDKMPEKNSV 300
NA+IGFYT+CG + V AL ERMPV DIIT TE+I AYMEFG VDLAV++F+KMPEKNSV
Sbjct: 344 NAIIGFYTRCGSLNHVAALFERMPVRDIITWTEMITAYMEFGLVDLAVDMFNKMPEKNSV 403
Query: 301 SYNALLAGYCKNGKAMEALGLFVKLLEEGLVLTEFTLTSVVNACGLIMEAKLSEQIHGFV 360
SYNALL G+CKN + ++AL LFV++++EG LT+FTLT V+NACGL+++ ++S QIHGF+
Sbjct: 404 SYNALLTGFCKNNEGLKALNLFVRMVQEGAELTDFTLTGVINACGLLLKLEISRQIHGFI 463
Query: 361 MKFGLGSNDCIEAALLDMLTRCGRMADAEKMFYRWPTDRDDSIIWTSMICGYARSGKPEH 420
+KFG SN CIEAAL+DM ++CGRM DA++MF TD +SII TSMICGYAR+G PE
Sbjct: 464 IKFGFRSNACIEAALIDMCSKCGRMDDADRMFQSLSTDGGNSIIQTSMICGYARNGLPEE 523
Query: 421 AILLFHQSQSEATVVPDEIALTSVLGVCGTLGFHEMGKQIHSYALKTGFSSDLGVANSMV 480
AI LF++ QSE T+V DE+A TS+LGVCGTLGFHE+GKQIH ALKTGF ++LGV NS++
Sbjct: 524 AICLFYRCQSEGTMVLDEVAFTSILGVCGTLGFHEVGKQIHCQALKTGFHAELGVGNSII 583
Query: 481 SMYFKCCNMSNAIKAFNKMPSHDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDAI 540
SMY KC N+ +AIKAFN MP HD+VSWNGLIAG LLHRQGDEALA+WSSMEKA IKPDAI
Sbjct: 584 SMYSKCYNIDDAIKAFNTMPGHDVVSWNGLIAGQLLHRQGDEALAIWSSMEKAGIKPDAI 643
Query: 541 TFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLEEAEETI 600
TFVLI+SAY++T+ NL+D CR LFLSMK I+++EPTSEHYASLV VLGYWG LEEAEE I
Sbjct: 644 TFVLIVSAYKFTSSNLLDECRSLFLSMKMIHDLEPTSEHYASLVGVLGYWGLLEEAEELI 703
Query: 601 NNMPFQPKVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWH 660
N MPF P+VSVWRALLD CR+ NT+IGKRVAKHI+ MEP+DP+TY+LVSNLY++SGRWH
Sbjct: 704 NKMPFDPEVSVWRALLDGCRLHANTSIGKRVAKHIIGMEPRDPSTYVLVSNLYAASGRWH 763
Query: 661 NSELVREDMREKGFRKHPSRSWIIHQNKVHSFYVRDKSHPREKDIYSGLEILILECLKAG 720
SE+VRE+MR++G RKHP RSW+I + ++H+FY RDKSHP+ DIYSGL+ILIL+CLKAG
Sbjct: 764 CSEMVRENMRDRGLRKHPCRSWVIIKKQLHTFYARDKSHPQSNDIYSGLDILILKCLKAG 823
Query: 721 YVPDTSFVLHEVEEHQKKDFLFYHSAKLAATYGLLTTPAGQPVRIVKNILTCGDCHSFLK 780
Y PD SFVL EVEE QKKDFLFYHSAKLAATYGLL T G+P+R+VKNIL C DCH+FLK
Sbjct: 824 YEPDMSFVLQEVEEQQKKDFLFYHSAKLAATYGLLKTRPGEPIRVVKNILLCRDCHTFLK 883
Query: 781 YVSVVTRREIFLRDASGFHHFLNGQCSCKDYW 812
Y +VVT+REI RDASGFH F NGQCSCK YW
Sbjct: 884 YATVVTQREIIFRDASGFHCFSNGQCSCKGYW 915
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449451241|ref|XP_004143370.1| PREDICTED: pentatricopeptide repeat-containing protein At5g03800-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1078 bits (2787), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 506/811 (62%), Positives = 642/811 (79%), Gaps = 3/811 (0%)
Query: 2 FNSLRLSVQCGEVSLAKAIHASLIKLLLEQDTRFGNPLISAYLKLGHVADAYKIFYGLSS 61
F+ LRLS + G+ LA+A+HA +KL E+D GN LISAYLKLG V DA K+F GLS
Sbjct: 101 FDLLRLSTRYGDPDLARAVHAQFLKL--EEDIFLGNALISAYLKLGLVRDADKVFSGLSC 158
Query: 62 PNVVSFTSLISGLAKLGREEEAIELFFRMRSEGIVPNEHSFVAILTACIRLLELELGFQI 121
PNVVS+T+LISG +K E+EA+ELFF M GI PNE++FVAILTACIR ++ +LG Q+
Sbjct: 159 PNVVSYTALISGFSKSDWEDEAVELFFAMLDSGIEPNEYTFVAILTACIRNMDYQLGSQV 218
Query: 122 HALIVKMGCVDSVFVTNALMGLYGKFSFCLDYLLKLFDELPHKDTVSWNTVISSVVNEFE 181
H ++VK+G + VF+ NALMGLY K F LD +L+LF+E+P +D SWNTVISS+V EF+
Sbjct: 219 HGIVVKLGLLSCVFICNALMGLYCKCGF-LDLVLRLFEEMPERDITSWNTVISSLVKEFK 277
Query: 182 YEKAFELFRDMKRDNGFTVDYFTISTLLTACTGCFVLMEGRAVHAHAIRIGLGANLSVNN 241
Y++AF+ FR M+ G VD+F++STLLTAC G M+G+ +HA A+++GL ++LSV++
Sbjct: 278 YDEAFDYFRGMQLCKGLKVDHFSLSTLLTACAGSVKPMKGQQLHALALKVGLESHLSVSS 337
Query: 242 ALIGFYTKCGRVKDVVALLERMPVMDIITLTEIIIAYMEFGYVDLAVEIFDKMPEKNSVS 301
+LIGFYTKCG DV L E MP+ D+IT T +I +YMEFG +D AVE+F+KMP++N +S
Sbjct: 338 SLIGFYTKCGSANDVTDLFETMPIRDVITWTGMITSYMEFGMLDSAVEVFNKMPKRNCIS 397
Query: 302 YNALLAGYCKNGKAMEALGLFVKLLEEGLVLTEFTLTSVVNACGLIMEAKLSEQIHGFVM 361
YNA+LAG +N AL LF+++LEEG+ +++ TLTS++ ACGL+ K+S+QI GFVM
Sbjct: 398 YNAVLAGLSRNDDGSRALELFIEMLEEGVEISDCTLTSIITACGLLKSFKVSQQIQGFVM 457
Query: 362 KFGLGSNDCIEAALLDMLTRCGRMADAEKMFYRWPTDRDDSIIWTSMICGYARSGKPEHA 421
KFG+ SN CIE AL+DM TRCGRM DAEK+FY+ + D + + TSMICGYAR+GK A
Sbjct: 458 KFGILSNSCIETALVDMYTRCGRMEDAEKIFYQRSLENDYTAMLTSMICGYARNGKLNEA 517
Query: 422 ILLFHQSQSEATVVPDEIALTSVLGVCGTLGFHEMGKQIHSYALKTGFSSDLGVANSMVS 481
I LFH QSE +V DE+ TS+L +CG++GFHEMGKQ+H +ALK+G ++ GV N+ VS
Sbjct: 518 ISLFHSGQSEGAIVMDEVMSTSILSLCGSIGFHEMGKQMHCHALKSGLITETGVGNATVS 577
Query: 482 MYFKCCNMSNAIKAFNKMPSHDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDAIT 541
MY KC NM +A++ FN M DIVSWNGL+AGH+LH QGD+AL +W MEKA IKPD+IT
Sbjct: 578 MYSKCWNMDDAVRVFNTMNMQDIVSWNGLVAGHVLHWQGDKALGIWKKMEKAGIKPDSIT 637
Query: 542 FVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLEEAEETIN 601
F LIISAY++T LNLVDSCR LF+SM+T +NI+PT EHYAS +SVLG WG LEEAE+TI
Sbjct: 638 FALIISAYKHTELNLVDSCRSLFVSMETEHNIKPTLEHYASFISVLGRWGLLEEAEQTIR 697
Query: 602 NMPFQPKVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWHN 661
NMP +P V VWRALL+SCRI N + K A++ILA+EP+DP +YIL SNLYS+SGRW+
Sbjct: 698 NMPLEPDVYVWRALLNSCRINKNERLEKLAARNILAVEPKDPLSYILKSNLYSASGRWYY 757
Query: 662 SELVREDMREKGFRKHPSRSWIIHQNKVHSFYVRDKSHPREKDIYSGLEILILECLKAGY 721
SE VREDMREKGFRKHPS+SWIIH+NK+HSFY RD+SHP+ KDIYSGLEILILECLK GY
Sbjct: 758 SEKVREDMREKGFRKHPSQSWIIHENKIHSFYARDRSHPQGKDIYSGLEILILECLKVGY 817
Query: 722 VPDTSFVLHEVEEHQKKDFLFYHSAKLAATYGLLTTPAGQPVRIVKNILTCGDCHSFLKY 781
VPDTSFVL EVEE QKK+FLFYHS KLAAT+G+L T G+P++IVKN+ CGDCH+FLKY
Sbjct: 818 VPDTSFVLQEVEERQKKEFLFYHSGKLAATFGILMTKPGKPIQIVKNVRLCGDCHNFLKY 877
Query: 782 VSVVTRREIFLRDASGFHHFLNGQCSCKDYW 812
VS+VTRR+I LRD SGFH F++GQCSC DYW
Sbjct: 878 VSIVTRRKILLRDTSGFHWFIDGQCSCTDYW 908
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449482566|ref|XP_004156326.1| PREDICTED: pentatricopeptide repeat-containing protein At5g03800-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1076 bits (2783), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 505/811 (62%), Positives = 641/811 (79%), Gaps = 3/811 (0%)
Query: 2 FNSLRLSVQCGEVSLAKAIHASLIKLLLEQDTRFGNPLISAYLKLGHVADAYKIFYGLSS 61
F+ LRLS + G+ LA+A+HA +KL E+D GN LISAYLKLG V DA K+F GLS
Sbjct: 101 FDLLRLSTRYGDPDLARAVHAQFLKL--EEDIFLGNALISAYLKLGLVRDADKVFSGLSC 158
Query: 62 PNVVSFTSLISGLAKLGREEEAIELFFRMRSEGIVPNEHSFVAILTACIRLLELELGFQI 121
PNVVS+T+LISG +K E+EA+ELFF M GI PNE++FVAILTACIR ++ +LG Q+
Sbjct: 159 PNVVSYTALISGFSKSDWEDEAVELFFAMLDSGIEPNEYTFVAILTACIRNMDYQLGSQV 218
Query: 122 HALIVKMGCVDSVFVTNALMGLYGKFSFCLDYLLKLFDELPHKDTVSWNTVISSVVNEFE 181
H ++VK+G + VF+ NALMGLY K F LD +L+LF+E+P +D SWNTVISS+V EF+
Sbjct: 219 HGIVVKLGLLSCVFICNALMGLYCKCGF-LDLVLRLFEEMPERDITSWNTVISSLVKEFK 277
Query: 182 YEKAFELFRDMKRDNGFTVDYFTISTLLTACTGCFVLMEGRAVHAHAIRIGLGANLSVNN 241
Y++AF+ FR M+ G VD+F++STLLTAC G M+G+ +HA A+++GL ++LSV++
Sbjct: 278 YDEAFDYFRGMQLCKGLKVDHFSLSTLLTACAGSVKPMKGQQLHALALKVGLESHLSVSS 337
Query: 242 ALIGFYTKCGRVKDVVALLERMPVMDIITLTEIIIAYMEFGYVDLAVEIFDKMPEKNSVS 301
+LIGFYTKCG DV L E MP+ D+IT T +I +YMEFG +D AVE+F+KMP++N +S
Sbjct: 338 SLIGFYTKCGSANDVTDLFETMPIRDVITWTGMITSYMEFGMLDSAVEVFNKMPKRNCIS 397
Query: 302 YNALLAGYCKNGKAMEALGLFVKLLEEGLVLTEFTLTSVVNACGLIMEAKLSEQIHGFVM 361
YNA+LAG +N AL LF+++LEEG+ +++ TLTS++ ACGL+ K+S+QI GFVM
Sbjct: 398 YNAVLAGLSRNDDGSRALELFIEMLEEGVEISDCTLTSIITACGLLKSFKVSQQIQGFVM 457
Query: 362 KFGLGSNDCIEAALLDMLTRCGRMADAEKMFYRWPTDRDDSIIWTSMICGYARSGKPEHA 421
KFG+ SN CIE AL+DM TRCGRM DAEK+FY+ + D + + TSMICGYAR+GK A
Sbjct: 458 KFGILSNSCIETALVDMYTRCGRMEDAEKIFYQRSLENDYTAMLTSMICGYARNGKLNEA 517
Query: 422 ILLFHQSQSEATVVPDEIALTSVLGVCGTLGFHEMGKQIHSYALKTGFSSDLGVANSMVS 481
I LFH QSE +V DE+ TS+L +CG++GFHEMG Q+H +ALK+G ++ GV N+ VS
Sbjct: 518 ISLFHSGQSEGAIVMDEVMSTSILSLCGSIGFHEMGMQMHCHALKSGLITETGVGNATVS 577
Query: 482 MYFKCCNMSNAIKAFNKMPSHDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDAIT 541
MY KC NM +A++ FN M DIVSWNGL+AGH+LH QGD+AL +W MEKA IKPD+IT
Sbjct: 578 MYSKCWNMDDAVRVFNTMNMQDIVSWNGLVAGHVLHWQGDKALGIWKKMEKAGIKPDSIT 637
Query: 542 FVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLEEAEETIN 601
F LIISAY++T LNLVDSCR LF+SM+T +NI+PT EHYAS +SVLG WG LEEAE+TI
Sbjct: 638 FALIISAYKHTELNLVDSCRSLFVSMETEHNIKPTLEHYASFISVLGRWGLLEEAEQTIR 697
Query: 602 NMPFQPKVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWHN 661
NMP +P V VWRALL+SCRI N + K A++ILA+EP+DP +YIL SNLYS+SGRW+
Sbjct: 698 NMPLEPDVYVWRALLNSCRINKNERLEKLAARNILAVEPKDPLSYILKSNLYSASGRWYY 757
Query: 662 SELVREDMREKGFRKHPSRSWIIHQNKVHSFYVRDKSHPREKDIYSGLEILILECLKAGY 721
SE VREDMREKGFRKHPS+SWIIH+NK+HSFY RD+SHP+ KDIYSGLEILILECLK GY
Sbjct: 758 SEKVREDMREKGFRKHPSQSWIIHENKIHSFYARDRSHPQGKDIYSGLEILILECLKVGY 817
Query: 722 VPDTSFVLHEVEEHQKKDFLFYHSAKLAATYGLLTTPAGQPVRIVKNILTCGDCHSFLKY 781
VPDTSFVL EVEE QKK+FLFYHS KLAAT+G+L T G+P++IVKN+ CGDCH+FLKY
Sbjct: 818 VPDTSFVLQEVEERQKKEFLFYHSGKLAATFGILMTKPGKPIQIVKNVRLCGDCHNFLKY 877
Query: 782 VSVVTRREIFLRDASGFHHFLNGQCSCKDYW 812
VS+VTRR+I LRD SGFH F++GQCSC DYW
Sbjct: 878 VSIVTRRKILLRDTSGFHWFIDGQCSCTDYW 908
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297810463|ref|XP_002873115.1| EMB175 [Arabidopsis lyrata subsp. lyrata] gi|297318952|gb|EFH49374.1| EMB175 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 1040 bits (2688), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 496/815 (60%), Positives = 631/815 (77%), Gaps = 4/815 (0%)
Query: 1 FFNSLRLSVQCGEVSLAKAIHASLIKLLLEQDTRFGNPLISAYLKLGHVADAYKIFYGLS 60
FF LRLS Q +V + KA+HAS +KL E+ TR GN LIS YLKLG +A+ +F LS
Sbjct: 83 FFYLLRLSAQYHDVEVTKAVHASFLKLR-EEKTRLGNALISTYLKLGFPREAFLVFVSLS 141
Query: 61 SPNVVSFTSLISGLAKLGREEEAIELFFRMRSEGIV-PNEHSFVAILTACIRLLELELGF 119
SP VVS+T+LISG ++L E EA+++FFRMR GIV PNE++FVAILTAC+R+ LG
Sbjct: 142 SPTVVSYTALISGFSRLNLEIEALKVFFRMRKAGIVQPNEYTFVAILTACVRVSRFSLGI 201
Query: 120 QIHALIVKMGCVDSVFVTNALMGLYGKFS-FCLDYLLKLFDELPHKDTVSWNTVISSVVN 178
QIH LIVK G ++SVFV N+LM LY K S D +LKLFDE+PH+D SWNTVISS+V
Sbjct: 202 QIHGLIVKSGFLNSVFVGNSLMSLYSKDSGSSCDDVLKLFDEIPHRDVASWNTVISSLVK 261
Query: 179 EFEYEKAFELFRDMKRDNGFTVDYFTISTLLTACTGCFVLMEGRAVHAHAIRIGLGANLS 238
E + KAF LF +M R G VD FT+STLL++CT L+ GR +H AIRIGL LS
Sbjct: 262 EGKSHKAFNLFYEMNRVEGLGVDCFTLSTLLSSCTDSSDLLRGRELHGRAIRIGLMQELS 321
Query: 239 VNNALIGFYTKCGRVKDVVALLERMPVMDIITLTEIIIAYMEFGYVDLAVEIFDKMPEKN 298
VNNALIGFY+K G +K V +L E M V D +T TE+I AYM FG VD AVEIF+ + EKN
Sbjct: 322 VNNALIGFYSKFGDMKKVESLYEMMMVQDAVTFTEMITAYMAFGMVDSAVEIFENITEKN 381
Query: 299 SVSYNALLAGYCKNGKAMEALGLFVKLLEEGLVLTEFTLTSVVNACGLIMEAKLSEQIHG 358
+++YNAL+AG+C+NG ++AL LF ++L+ G+ LT+F+LTS V+ACGL+ E ++SEQIHG
Sbjct: 382 TITYNALMAGFCRNGHGLKALKLFTEMLQRGVELTDFSLTSAVDACGLVSEKRVSEQIHG 441
Query: 359 FVMKFGLGSNDCIEAALLDMLTRCGRMADAEKMFYRWPTDRDDSIIWTSMICGYARSGKP 418
F +KFG N CI+ ALLDM TRC RMADAE+MF +WP++ D S TS++ GYAR+G P
Sbjct: 442 FCIKFGCLLNPCIQTALLDMCTRCERMADAEEMFEQWPSNLDRSKATTSILGGYARNGLP 501
Query: 419 EHAILLFHQSQSEATVVPDEIALTSVLGVCGTLGFHEMGKQIHSYALKTGFSSDLGVANS 478
+ A+ LFH++ E + DE++LT +L VCGTLGF EMG QIH YALK G+ SD+ + NS
Sbjct: 502 DKALSLFHRTLCEEELFLDEVSLTLILAVCGTLGFREMGYQIHCYALKAGYFSDVCLGNS 561
Query: 479 MVSMYFKCCNMSNAIKAFNKMPSHDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPD 538
++SMY KCC+ +AIK FN M HD+VSWN LI+ ++L R G+EALA+WS M + IKPD
Sbjct: 562 LISMYSKCCDSDDAIKVFNTMQEHDVVSWNSLISCYILQRNGNEALALWSRMNEEEIKPD 621
Query: 539 AITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLEEAEE 598
IT L+ISA+RYT N + SCR LFLSMKTIY+IEPT+EHY + V VLG+WG LEEAE+
Sbjct: 622 MITLTLVISAFRYTESNKLSSCRDLFLSMKTIYDIEPTTEHYTAFVRVLGHWGLLEEAED 681
Query: 599 TINNMPFQPKVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGR 658
TIN+MPFQP+VSV RALLDSCR+ NT++ KRVAK +L+ +P++P+ YIL SN+YS+SG
Sbjct: 682 TINSMPFQPEVSVLRALLDSCRVHSNTSVAKRVAKLVLSTKPENPSEYILKSNIYSASGL 741
Query: 659 WHNSELVREDMREKGFRKHPSRSWIIHQNKVHSFYVRDKSHPREKDIYSGLEILILECLK 718
WH SE++RE+MRE+G+RKHPS+SWIIH+ KVHSF+ RD SHP+EKDIYSGLEILI+ECLK
Sbjct: 742 WHRSEMIREEMRERGYRKHPSKSWIIHEKKVHSFHARDTSHPQEKDIYSGLEILIMECLK 801
Query: 719 AGYVPDTSFVLHEVEEHQKKDFLFYHSAKLAATYGLLTTPA-GQPVRIVKNILTCGDCHS 777
+GY P+T FVL EV+E KK FLF+HSAKLA TYG+LT+ G+PVR+VKN++ CGDCH
Sbjct: 802 SGYEPNTEFVLQEVDEFMKKSFLFHHSAKLAVTYGILTSNTRGKPVRVVKNVMLCGDCHE 861
Query: 778 FLKYVSVVTRREIFLRDASGFHHFLNGQCSCKDYW 812
F KYVSVV +REI LRD+SGFHHF+NG+CSC+D W
Sbjct: 862 FFKYVSVVVKREIVLRDSSGFHHFVNGKCSCRDLW 896
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|79506598|ref|NP_196000.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|75170265|sp|Q9FFN1.1|PP363_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g03800; AltName: Full=Protein EMBRYO DEFECTIVE 175 gi|9758009|dbj|BAB08606.1| selenium-binding protein-like [Arabidopsis thaliana] gi|26449508|dbj|BAC41880.1| unknown protein [Arabidopsis thaliana] gi|58013014|gb|AAW62960.1| embryo-defective 175 [Arabidopsis thaliana] gi|58013016|gb|AAW62961.1| embryo-defective 175 [Arabidopsis thaliana] gi|332003273|gb|AED90656.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1031 bits (2666), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 490/815 (60%), Positives = 626/815 (76%), Gaps = 4/815 (0%)
Query: 1 FFNSLRLSVQCGEVSLAKAIHASLIKLLLEQDTRFGNPLISAYLKLGHVADAYKIFYGLS 60
FF LRLS Q +V + KA+HAS +KL E+ TR GN LIS YLKLG +A +F LS
Sbjct: 83 FFYLLRLSAQYHDVEVTKAVHASFLKLR-EEKTRLGNALISTYLKLGFPREAILVFVSLS 141
Query: 61 SPNVVSFTSLISGLAKLGREEEAIELFFRMRSEGIV-PNEHSFVAILTACIRLLELELGF 119
SP VVS+T+LISG ++L E EA+++FFRMR G+V PNE++FVAILTAC+R+ LG
Sbjct: 142 SPTVVSYTALISGFSRLNLEIEALKVFFRMRKAGLVQPNEYTFVAILTACVRVSRFSLGI 201
Query: 120 QIHALIVKMGCVDSVFVTNALMGLYGKFS-FCLDYLLKLFDELPHKDTVSWNTVISSVVN 178
QIH LIVK G ++SVFV+N+LM LY K S D +LKLFDE+P +D SWNTV+SS+V
Sbjct: 202 QIHGLIVKSGFLNSVFVSNSLMSLYDKDSGSSCDDVLKLFDEIPQRDVASWNTVVSSLVK 261
Query: 179 EFEYEKAFELFRDMKRDNGFTVDYFTISTLLTACTGCFVLMEGRAVHAHAIRIGLGANLS 238
E + KAF+LF +M R GF VD FT+STLL++CT VL+ GR +H AIRIGL LS
Sbjct: 262 EGKSHKAFDLFYEMNRVEGFGVDSFTLSTLLSSCTDSSVLLRGRELHGRAIRIGLMQELS 321
Query: 239 VNNALIGFYTKCGRVKDVVALLERMPVMDIITLTEIIIAYMEFGYVDLAVEIFDKMPEKN 298
VNNALIGFY+K +K V +L E M D +T TE+I AYM FG VD AVEIF + EKN
Sbjct: 322 VNNALIGFYSKFWDMKKVESLYEMMMAQDAVTFTEMITAYMSFGMVDSAVEIFANVTEKN 381
Query: 299 SVSYNALLAGYCKNGKAMEALGLFVKLLEEGLVLTEFTLTSVVNACGLIMEAKLSEQIHG 358
+++YNAL+AG+C+NG ++AL LF +L+ G+ LT+F+LTS V+ACGL+ E K+SEQIHG
Sbjct: 382 TITYNALMAGFCRNGHGLKALKLFTDMLQRGVELTDFSLTSAVDACGLVSEKKVSEQIHG 441
Query: 359 FVMKFGLGSNDCIEAALLDMLTRCGRMADAEKMFYRWPTDRDDSIIWTSMICGYARSGKP 418
F +KFG N CI+ ALLDM TRC RMADAE+MF +WP++ D S TS+I GYAR+G P
Sbjct: 442 FCIKFGTAFNPCIQTALLDMCTRCERMADAEEMFDQWPSNLDSSKATTSIIGGYARNGLP 501
Query: 419 EHAILLFHQSQSEATVVPDEIALTSVLGVCGTLGFHEMGKQIHSYALKTGFSSDLGVANS 478
+ A+ LFH++ E + DE++LT +L VCGTLGF EMG QIH YALK G+ SD+ + NS
Sbjct: 502 DKAVSLFHRTLCEQKLFLDEVSLTLILAVCGTLGFREMGYQIHCYALKAGYFSDISLGNS 561
Query: 479 MVSMYFKCCNMSNAIKAFNKMPSHDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPD 538
++SMY KCC+ +AIK FN M HD++SWN LI+ ++L R GDEALA+WS M + IKPD
Sbjct: 562 LISMYAKCCDSDDAIKIFNTMREHDVISWNSLISCYILQRNGDEALALWSRMNEKEIKPD 621
Query: 539 AITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLEEAEE 598
IT L+ISA+RYT N + SCR LFLSMKTIY+IEPT+EHY + V VLG+WG LEEAE+
Sbjct: 622 IITLTLVISAFRYTESNKLSSCRDLFLSMKTIYDIEPTTEHYTAFVRVLGHWGLLEEAED 681
Query: 599 TINNMPFQPKVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGR 658
TIN+MP QP+VSV RALLDSCRI NT++ KRVAK IL+ +P+ P+ YIL SN+YS+SG
Sbjct: 682 TINSMPVQPEVSVLRALLDSCRIHSNTSVAKRVAKLILSTKPETPSEYILKSNIYSASGF 741
Query: 659 WHNSELVREDMREKGFRKHPSRSWIIHQNKVHSFYVRDKSHPREKDIYSGLEILILECLK 718
WH SE++RE+MRE+G+RKHP++SWIIH+NK+HSF+ RD SHP+EKDIY GLEILI+ECLK
Sbjct: 742 WHRSEMIREEMRERGYRKHPAKSWIIHENKIHSFHARDTSHPQEKDIYRGLEILIMECLK 801
Query: 719 AGYVPDTSFVLHEVEEHQKKDFLFYHSAKLAATYGLLTTPA-GQPVRIVKNILTCGDCHS 777
GY P+T +VL EV+E KK FLF+HSAKLA TYG+L++ G+PVR++KN++ CGDCH
Sbjct: 802 VGYEPNTEYVLQEVDEFMKKSFLFHHSAKLAVTYGILSSNTRGKPVRVMKNVMLCGDCHE 861
Query: 778 FLKYVSVVTRREIFLRDASGFHHFLNGQCSCKDYW 812
F KY+SVV +REI LRD+SGFHHF+NG+CSC+D W
Sbjct: 862 FFKYISVVVKREIVLRDSSGFHHFVNGKCSCRDLW 896
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356503769|ref|XP_003520676.1| PREDICTED: pentatricopeptide repeat-containing protein At5g03800-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1009 bits (2609), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 485/814 (59%), Positives = 618/814 (75%), Gaps = 8/814 (0%)
Query: 1 FFNSLRLSVQCGEVSLAKAIHASLIKLLLEQDTRFGNPLISAYLKLGHVADAYKIFYGLS 60
++L +S + G+ LAK +HA+L+K E+DT N LIS YLKL A ++F L
Sbjct: 67 LLHALHVSSRSGDTHLAKTVHATLLKRD-EEDTHLSNALISTYLKLNLFPHALRLFLSLP 125
Query: 61 SPNVVSFTSLISGLAKLGREEEAIELFFRMRSEG-IVPNEHSFVAILTACIRLLE-LELG 118
SPNVVS+T+LIS L+K R+ A+ LF RM + + PNE+++VA+LTAC LL G
Sbjct: 126 SPNVVSYTTLISFLSK-HRQHHALHLFLRMTTRSHLPPNEYTYVAVLTACSSLLHHFHFG 184
Query: 119 FQIHALIVKMGCVDSVFVTNALMGLYGKFSFCLDYLLKLFDELPHKDTVSWNTVISSVVN 178
Q+HA +K DS FV NAL+ LY K + LKLF+++P +D SWNT+IS+ +
Sbjct: 185 LQLHAAALKTAHFDSPFVANALVSLYAKHA-SFHAALKLFNQIPRRDIASWNTIISAALQ 243
Query: 179 EFEYEKAFELFRDMKRDNGFTVDYFTISTLLTACTGCFVLMEGRAVHAHAIRIGLGANLS 238
+ Y+ AF LFR+M+ + F VD FT+S LLTA LMEG+ VHAHA+++GL +L+
Sbjct: 244 DSLYDTAFRLFRNMQATDAFRVDDFTLSILLTASAS---LMEGQQVHAHAVKLGLETDLN 300
Query: 239 VNNALIGFYTKCGRVKDVVALLERMPVMDIITLTEIIIAYMEFGYVDLAVEIFDKMPEKN 298
V N LIGFY+K G V DV L E M V D+IT TE++ AYMEFG V+LA+++FD+MPEKN
Sbjct: 301 VGNGLIGFYSKFGNVDDVEWLFEGMRVRDVITWTEMVTAYMEFGLVNLALKVFDEMPEKN 360
Query: 299 SVSYNALLAGYCKNGKAMEALGLFVKLLEEGLVLTEFTLTSVVNACGLIMEAKLSEQIHG 358
SVSYN +LAG+C+N + EA+ LFV+++EEGL LT+F+LTSVV+ACGL+ + K+S+Q+HG
Sbjct: 361 SVSYNTVLAGFCRNEQGFEAMRLFVRMVEEGLELTDFSLTSVVDACGLLGDYKVSKQVHG 420
Query: 359 FVMKFGLGSNDCIEAALLDMLTRCGRMADAEKMFYRWPTDRDDSIIWTSMICGYARSGKP 418
F +KFG GSN +EAALLDM TRCGRM DA KMF RW + S++WT+MICGYAR+G+P
Sbjct: 421 FAVKFGFGSNGYVEAALLDMYTRCGRMVDAGKMFLRWELEEFSSVVWTAMICGYARNGQP 480
Query: 419 EHAILLFHQSQSEATVVPDEIALTSVLGVCGTLGFHEMGKQIHSYALKTGFSSDLGVANS 478
E AI LFH +S+ V+ DE+A S+LG+CGT+G +MGKQIH + +K G +L V N+
Sbjct: 481 EEAIYLFHVGRSDGKVIMDEVAAASMLGLCGTIGHLDMGKQIHCHVIKCGLGFNLEVGNA 540
Query: 479 MVSMYFKCCNMSNAIKAFNKMPSHDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPD 538
+VSMYFKC ++ +A+K F MP DIV+WN LI+G+L+HRQGD AL +W M IKP+
Sbjct: 541 VVSMYFKCGSVDDAMKVFGDMPCTDIVTWNTLISGNLMHRQGDRALEIWVEMLGEGIKPN 600
Query: 539 AITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLEEAEE 598
+TFVLIISAYR TNLNLVD CR LF SM+T+Y IEPTS HYAS +SVLG+WG L+EA E
Sbjct: 601 QVTFVLIISAYRQTNLNLVDDCRNLFNSMRTVYQIEPTSRHYASFISVLGHWGLLQEALE 660
Query: 599 TINNMPFQPKVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGR 658
TINNMPFQP VWR LLD CR+ N IGK A++ILA+EP+DP+T+ILVSNLYS+SGR
Sbjct: 661 TINNMPFQPSALVWRVLLDGCRLHKNELIGKWAAQNILALEPKDPSTFILVSNLYSASGR 720
Query: 659 WHNSELVREDMREKGFRKHPSRSWIIHQNKVHSFYVRDKSHPREKDIYSGLEILILECLK 718
W SE+VREDMREKGFRKHP++SWI+ + K++SFY RD+SHP+EKDI GLEILILECLK
Sbjct: 721 WDRSEMVREDMREKGFRKHPAQSWIVCEKKINSFYPRDRSHPQEKDIQRGLEILILECLK 780
Query: 719 AGYVPDTSFVLHEVEEHQKKDFLFYHSAKLAATYGLLTTPAGQPVRIVKNILTCGDCHSF 778
GY PDTSFVLHEVEEH KK FLF+HSAKLAATYG+L T G+P+RIVKNIL CGDCH+F
Sbjct: 781 IGYEPDTSFVLHEVEEHHKKIFLFHHSAKLAATYGILMTKPGKPIRIVKNILLCGDCHAF 840
Query: 779 LKYVSVVTRREIFLRDASGFHHFLNGQCSCKDYW 812
LKY S+VT+R+IFLRD+SGFH F NGQCSCKD W
Sbjct: 841 LKYASIVTKRDIFLRDSSGFHCFSNGQCSCKDCW 874
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|7406390|emb|CAB85500.1| putative protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 943 bits (2437), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 453/756 (59%), Positives = 576/756 (76%), Gaps = 3/756 (0%)
Query: 1 FFNSLRLSVQCGEVSLAKAIHASLIKLLLEQDTRFGNPLISAYLKLGHVADAYKIFYGLS 60
FF LRLS Q +V + KA+HAS +KL E+ TR GN LIS YLKLG +A +F LS
Sbjct: 83 FFYLLRLSAQYHDVEVTKAVHASFLKLR-EEKTRLGNALISTYLKLGFPREAILVFVSLS 141
Query: 61 SPNVVSFTSLISGLAKLGREEEAIELFFRMRSEGIV-PNEHSFVAILTACIRLLELELGF 119
SP VVS+T+LISG ++L E EA+++FFRMR G+V PNE++FVAILTAC+R+ LG
Sbjct: 142 SPTVVSYTALISGFSRLNLEIEALKVFFRMRKAGLVQPNEYTFVAILTACVRVSRFSLGI 201
Query: 120 QIHALIVKMGCVDSVFVTNALMGLYGKFS-FCLDYLLKLFDELPHKDTVSWNTVISSVVN 178
QIH LIVK G ++SVFV+N+LM LY K S D +LKLFDE+P +D SWNTV+SS+V
Sbjct: 202 QIHGLIVKSGFLNSVFVSNSLMSLYDKDSGSSCDDVLKLFDEIPQRDVASWNTVVSSLVK 261
Query: 179 EFEYEKAFELFRDMKRDNGFTVDYFTISTLLTACTGCFVLMEGRAVHAHAIRIGLGANLS 238
E + KAF+LF +M R GF VD FT+STLL++CT VL+ GR +H AIRIGL LS
Sbjct: 262 EGKSHKAFDLFYEMNRVEGFGVDSFTLSTLLSSCTDSSVLLRGRELHGRAIRIGLMQELS 321
Query: 239 VNNALIGFYTKCGRVKDVVALLERMPVMDIITLTEIIIAYMEFGYVDLAVEIFDKMPEKN 298
VNNALIGFY+K +K V +L E M D +T TE+I AYM FG VD AVEIF + EKN
Sbjct: 322 VNNALIGFYSKFWDMKKVESLYEMMMAQDAVTFTEMITAYMSFGMVDSAVEIFANVTEKN 381
Query: 299 SVSYNALLAGYCKNGKAMEALGLFVKLLEEGLVLTEFTLTSVVNACGLIMEAKLSEQIHG 358
+++YNAL+AG+C+NG ++AL LF +L+ G+ LT+F+LTS V+ACGL+ E K+SEQIHG
Sbjct: 382 TITYNALMAGFCRNGHGLKALKLFTDMLQRGVELTDFSLTSAVDACGLVSEKKVSEQIHG 441
Query: 359 FVMKFGLGSNDCIEAALLDMLTRCGRMADAEKMFYRWPTDRDDSIIWTSMICGYARSGKP 418
F +KFG N CI+ ALLDM TRC RMADAE+MF +WP++ D S TS+I GYAR+G P
Sbjct: 442 FCIKFGTAFNPCIQTALLDMCTRCERMADAEEMFDQWPSNLDSSKATTSIIGGYARNGLP 501
Query: 419 EHAILLFHQSQSEATVVPDEIALTSVLGVCGTLGFHEMGKQIHSYALKTGFSSDLGVANS 478
+ A+ LFH++ E + DE++LT +L VCGTLGF EMG QIH YALK G+ SD+ + NS
Sbjct: 502 DKAVSLFHRTLCEQKLFLDEVSLTLILAVCGTLGFREMGYQIHCYALKAGYFSDISLGNS 561
Query: 479 MVSMYFKCCNMSNAIKAFNKMPSHDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPD 538
++SMY KCC+ +AIK FN M HD++SWN LI+ ++L R GDEALA+WS M + IKPD
Sbjct: 562 LISMYAKCCDSDDAIKIFNTMREHDVISWNSLISCYILQRNGDEALALWSRMNEKEIKPD 621
Query: 539 AITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLEEAEE 598
IT L+ISA+RYT N + SCR LFLSMKTIY+IEPT+EHY + V VLG+WG LEEAE+
Sbjct: 622 IITLTLVISAFRYTESNKLSSCRDLFLSMKTIYDIEPTTEHYTAFVRVLGHWGLLEEAED 681
Query: 599 TINNMPFQPKVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGR 658
TIN+MP QP+VSV RALLDSCRI NT++ KRVAK IL+ +P+ P+ YIL SN+YS+SG
Sbjct: 682 TINSMPVQPEVSVLRALLDSCRIHSNTSVAKRVAKLILSTKPETPSEYILKSNIYSASGF 741
Query: 659 WHNSELVREDMREKGFRKHPSRSWIIHQNKVHSFYVRDKSHPREKDIYSGLEILILECLK 718
WH SE++RE+MRE+G+RKHP++SWIIH+NK+HSF+ RD SHP+EKDIY GLEILI+ECLK
Sbjct: 742 WHRSEMIREEMRERGYRKHPAKSWIIHENKIHSFHARDTSHPQEKDIYRGLEILIMECLK 801
Query: 719 AGYVPDTSFVLHEVEEHQKKDFLFYHSAKLAATYGL 754
GY P+T +VL EV+E KK FLF+HSAKLA TYG+
Sbjct: 802 VGYEPNTEYVLQEVDEFMKKSFLFHHSAKLAVTYGI 837
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147843478|emb|CAN82063.1| hypothetical protein VITISV_016431 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 817 bits (2111), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 435/808 (53%), Positives = 531/808 (65%), Gaps = 133/808 (16%)
Query: 5 LRLSVQCGEVSLAKAIHASLIKLLLEQDTRFGNPLISAYLKLGHVADAYKIFYGLSSPNV 64
L LSV+ +V L KA+HAS+ KL +D N LI AYLKLG V +A K+F GLS PNV
Sbjct: 81 LDLSVRYDDVELIKAVHASIFKL--AEDIHLANALIVAYLKLGMVXNAXKVFVGLSCPNV 138
Query: 65 VSFTSLISGLAKLGREEEAIELFFRMRSEGIVPNEHSFVAILTACIRLLELELGFQIHAL 124
VS+T++ISG AK RE +A+E+FFRMRS GI NE SFVAILT CIRLL+LELG Q+HA+
Sbjct: 139 VSYTAMISGFAKSNRERQAMEIFFRMRSSGIELNEFSFVAILTVCIRLLDLELGCQLHAI 198
Query: 125 IVKMGCVDSVFVTNALMGLYGKFSFCLDYLLKLFDELPHKDTVSWNTVISSVVNEFEYEK 184
++KMG ++ FV+NALMGLYGK + LD +L+LFDE+ H+D SWNTVISSVV E YE+
Sbjct: 199 VIKMGFLNYTFVSNALMGLYGKCGY-LDXVLQLFDEMXHRDIASWNTVISSVVKEMMYER 257
Query: 185 AFELFRDMKRDNGFTVDYFTISTLLTACTGCFVLMEGRAVHAHAIRIGLGANLSVNNALI 244
AFELFRDM+R +GF +D+FT+ST+L A ME A+
Sbjct: 258 AFELFRDMRRIDGFRIDHFTLSTILVAA------MEDLALE------------------- 292
Query: 245 GFYTKCGRVKDVVALLERMPVMDIITLTEIIIAYMEFGYVDLAVEIFDKMPEKNSVSYNA 304
+ ++MP + I+ I+ + + G
Sbjct: 293 --------------VFDKMPARNSISYNAILSGFCQNG---------------------- 316
Query: 305 LLAGYCKNGKAMEALGLFVKLLEEGLVLTEFTLTSVVNACGLIMEAKLSEQIHGFVMKFG 364
+ +AL F +++EEG+ LT+FT T V+NACGL+MEAK+S+QIHGF++KFG
Sbjct: 317 ---------EGSKALAFFCRMVEEGVELTDFTXTGVLNACGLLMEAKISKQIHGFILKFG 367
Query: 365 LGSNDCIEAALLDMLTRCGRMADAEKMFYRWPTDRDDSIIWTSMICGYARSGKPEHAILL 424
GSN CIEAALLDM TRCGRMADA+KMF + + SIIWTSMICGYAR+ +PE AI L
Sbjct: 368 FGSNACIEAALLDMCTRCGRMADAQKMFSQGXFXQSGSIIWTSMICGYARNAQPEEAISL 427
Query: 425 FHQSQSEATVVPDEIALTSVLGVCGTLGFHEMGKQIHSYALKTGFSSDLGVANSMVSMYF 484
F QSQ E +V D +A T+VLGVCGTL FHEMGKQIH +ALK+GF SDLGV NS+++MY
Sbjct: 428 FCQSQLEGAMVVDXVASTAVLGVCGTLAFHEMGKQIHCHALKSGFLSDLGVGNSIITMYS 487
Query: 485 KCCNMSNAIKAFNKMPSHDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDAITFVL 544
KC NM +AIK FN MP+HDIVSWNGLIAGHLLHRQGDEAL+VWS MEKA IKPD +TFVL
Sbjct: 488 KCSNMXDAIKVFNVMPAHDIVSWNGLIAGHLLHRQGDEALSVWSKMEKAGIKPDTVTFVL 547
Query: 545 IISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLEEAEETINNMP 604
IISAYR+TN NLVD+CR+LFLSMKTIY+I+PT HY SLV VLGYWG LEEAEE IN MP
Sbjct: 548 IISAYRHTNSNLVDNCRRLFLSMKTIYHIDPTVXHYTSLVGVLGYWGLLEEAEEMINKMP 607
Query: 605 FQPKVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWHNSEL 664
+P+ SVWRALLD+CR + I + A + P + S L EL
Sbjct: 608 IEPEASVWRALLDACR---SWIIHENKVHSFYARDKSHPQAKDIHSGL----------EL 654
Query: 665 VREDMREKGFRKHPSRSWIIHQNKVHSFYVRDKSHPREKDIYSGLEILILECLKAGYVPD 724
+ + + G+ P S+++H
Sbjct: 655 LIMECLKAGYV--PDTSFVLH--------------------------------------- 673
Query: 725 TSFVLHEVEEHQKKDFLFYHSAKLAATYGLLTTPAGQPVRIVKNILTCGDCHSFLKYVSV 784
EVEEHQKKDFLFYHSAK+AATYGLL T G+ +RIVKNIL CGDCH+FLKYVS+
Sbjct: 674 ------EVEEHQKKDFLFYHSAKIAATYGLLMTRPGRXIRIVKNILLCGDCHTFLKYVSI 727
Query: 785 VTRREIFLRDASGFHHFLNGQCSCKDYW 812
VT REIFLRDASG H FLNGQCSCKDYW
Sbjct: 728 VTGREIFLRDASGHHCFLNGQCSCKDYW 755
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 812 | ||||||
| TAIR|locus:2150690 | 896 | EMB175 "AT5G03800" [Arabidopsi | 0.997 | 0.904 | 0.601 | 2.5e-271 | |
| TAIR|locus:2148101 | 850 | AT5G16860 "AT5G16860" [Arabido | 0.983 | 0.94 | 0.330 | 2.6e-127 | |
| TAIR|locus:2103483 | 890 | OTP84 "ORGANELLE TRANSCRIPT PR | 0.639 | 0.583 | 0.381 | 1.5e-125 | |
| TAIR|locus:2124137 | 871 | DOT4 "DEFECTIVELY ORGANIZED TR | 0.653 | 0.609 | 0.357 | 3.9e-125 | |
| TAIR|locus:505006130 | 970 | AT1G18485 [Arabidopsis thalian | 0.667 | 0.558 | 0.323 | 6.8e-117 | |
| TAIR|locus:2205200 | 741 | OTP82 "AT1G08070" [Arabidopsis | 0.865 | 0.948 | 0.338 | 1.3e-116 | |
| TAIR|locus:2131939 | 792 | MEF29 "AT4G30700" [Arabidopsis | 0.657 | 0.674 | 0.343 | 1.1e-114 | |
| TAIR|locus:2205425 | 743 | AT1G68930 "AT1G68930" [Arabido | 0.828 | 0.905 | 0.325 | 1e-111 | |
| TAIR|locus:2125899 | 990 | AT4G33170 [Arabidopsis thalian | 0.782 | 0.641 | 0.336 | 5.6e-109 | |
| TAIR|locus:2083631 | 689 | AT3G15130 "AT3G15130" [Arabido | 0.655 | 0.772 | 0.329 | 7.2e-107 |
| TAIR|locus:2150690 EMB175 "AT5G03800" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2609 (923.5 bits), Expect = 2.5e-271, P = 2.5e-271
Identities = 491/816 (60%), Positives = 627/816 (76%)
Query: 1 FFNSLRLSVQCGEVSLAKAIHASLIKLLLEQDTRFGNPLISAYLKLGHVADAYKIFYGLS 60
FF LRLS Q +V + KA+HAS +KL E+ TR GN LIS YLKLG +A +F LS
Sbjct: 83 FFYLLRLSAQYHDVEVTKAVHASFLKLR-EEKTRLGNALISTYLKLGFPREAILVFVSLS 141
Query: 61 SPNVVSFTSLISGLAKLGREEEAIELFFRMRSEGIV-PNEHSFVAILTACIRLLELELGF 119
SP VVS+T+LISG ++L E EA+++FFRMR G+V PNE++FVAILTAC+R+ LG
Sbjct: 142 SPTVVSYTALISGFSRLNLEIEALKVFFRMRKAGLVQPNEYTFVAILTACVRVSRFSLGI 201
Query: 120 QIHALIVKMGCVDSVFVTNALMGLYGKFS--FCLDYLLKLFDELPHKDTVSWNTVISSVV 177
QIH LIVK G ++SVFV+N+LM LY K S C D +LKLFDE+P +D SWNTV+SS+V
Sbjct: 202 QIHGLIVKSGFLNSVFVSNSLMSLYDKDSGSSC-DDVLKLFDEIPQRDVASWNTVVSSLV 260
Query: 178 NEFEYEKAFELFRDMKRDNGFTVDYFTISTLLTACTGCFVLMEGRAVHAHAIRIGLGANL 237
E + KAF+LF +M R GF VD FT+STLL++CT VL+ GR +H AIRIGL L
Sbjct: 261 KEGKSHKAFDLFYEMNRVEGFGVDSFTLSTLLSSCTDSSVLLRGRELHGRAIRIGLMQEL 320
Query: 238 SVNNALIGFYTKCGRVKDVVALLERMPVMDIITLTEIIIAYMEFGYVDLAVEIFDKMPEK 297
SVNNALIGFY+K +K V +L E M D +T TE+I AYM FG VD AVEIF + EK
Sbjct: 321 SVNNALIGFYSKFWDMKKVESLYEMMMAQDAVTFTEMITAYMSFGMVDSAVEIFANVTEK 380
Query: 298 NSVSYNALLAGYCKNGKAMEALGLFVKLLEEGLVLTEFTLTSVVNACGLIMEAKLSEQIH 357
N+++YNAL+AG+C+NG ++AL LF +L+ G+ LT+F+LTS V+ACGL+ E K+SEQIH
Sbjct: 381 NTITYNALMAGFCRNGHGLKALKLFTDMLQRGVELTDFSLTSAVDACGLVSEKKVSEQIH 440
Query: 358 GFVMKFGLGSNDCIEAALLDMLTRCGRMADAEKMFYRWPTDRDDSIIWTSMICGYARSGK 417
GF +KFG N CI+ ALLDM TRC RMADAE+MF +WP++ D S TS+I GYAR+G
Sbjct: 441 GFCIKFGTAFNPCIQTALLDMCTRCERMADAEEMFDQWPSNLDSSKATTSIIGGYARNGL 500
Query: 418 PEHAILLFHQSQSEATVVPDEIALTSVLGVCGTLGFHEMGKQIHSYALKTGFSSDLGVAN 477
P+ A+ LFH++ E + DE++LT +L VCGTLGF EMG QIH YALK G+ SD+ + N
Sbjct: 501 PDKAVSLFHRTLCEQKLFLDEVSLTLILAVCGTLGFREMGYQIHCYALKAGYFSDISLGN 560
Query: 478 SMVSMYFKCCNMSNAIKAFNKMPSHDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKP 537
S++SMY KCC+ +AIK FN M HD++SWN LI+ ++L R GDEALA+WS M + IKP
Sbjct: 561 SLISMYAKCCDSDDAIKIFNTMREHDVISWNSLISCYILQRNGDEALALWSRMNEKEIKP 620
Query: 538 DAITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLEEAE 597
D IT L+ISA+RYT N + SCR LFLSMKTIY+IEPT+EHY + V VLG+WG LEEAE
Sbjct: 621 DIITLTLVISAFRYTESNKLSSCRDLFLSMKTIYDIEPTTEHYTAFVRVLGHWGLLEEAE 680
Query: 598 ETINNMPFQPKVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSG 657
+TIN+MP QP+VSV RALLDSCRI NT++ KRVAK IL+ +P+ P+ YIL SN+YS+SG
Sbjct: 681 DTINSMPVQPEVSVLRALLDSCRIHSNTSVAKRVAKLILSTKPETPSEYILKSNIYSASG 740
Query: 658 RWHNSELVREDMREKGFRKHPSRSWIIHQNKVHSFYVRDKSHPREKDIYSGLEILILECL 717
WH SE++RE+MRE+G+RKHP++SWIIH+NK+HSF+ RD SHP+EKDIY GLEILI+ECL
Sbjct: 741 FWHRSEMIREEMRERGYRKHPAKSWIIHENKIHSFHARDTSHPQEKDIYRGLEILIMECL 800
Query: 718 KAGYVPDTSFVLHEVEEHQKKDFLFYHSAKLAATYGLLTTPA-GQPVRIVKNILTCGDCH 776
K GY P+T +VL EV+E KK FLF+HSAKLA TYG+L++ G+PVR++KN++ CGDCH
Sbjct: 801 KVGYEPNTEYVLQEVDEFMKKSFLFHHSAKLAVTYGILSSNTRGKPVRVMKNVMLCGDCH 860
Query: 777 SFLKYVSVVTRREIFLRDASGFHHFLNGQCSCKDYW 812
F KY+SVV +REI LRD+SGFHHF+NG+CSC+D W
Sbjct: 861 EFFKYISVVVKREIVLRDSSGFHHFVNGKCSCRDLW 896
|
|
| TAIR|locus:2148101 AT5G16860 "AT5G16860" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1250 (445.1 bits), Expect = 2.6e-127, P = 2.6e-127
Identities = 270/818 (33%), Positives = 428/818 (52%)
Query: 10 QCGEVSLAKAIHASLIKLLLEQDTRFGNPLISAYLKLGHVADAYKIF--YGLSSPNVVSF 67
+C +S K IH L+ + + LIS Y+ +G ++ A + + S V +
Sbjct: 37 KCKTISQVKLIHQKLLSFGI-LTLNLTSHLISTYISVGCLSHAVSLLRRFPPSDAGVYHW 95
Query: 68 TSLISGLAKLGREEEAIELFFRMRSEGIVPNEHSFVAILTACIRLLELELGFQIHALIVK 127
SLI G + + LF M S P+ ++F + AC + + G HAL +
Sbjct: 96 NSLIRSYGDNGCANKCLYLFGLMHSLSWTPDNYTFPFVFKACGEISSVRCGESAHALSLV 155
Query: 128 MGCVDSVFVTNALMGLYGKFSFCLDYLLKLFDELPHKDTVSWNTVISSVVNEFEYEKAFE 187
G + +VFV NAL+ +Y + D K+FDE+ D VSWN++I S + + A E
Sbjct: 156 TGFISNVFVGNALVAMYSRCRSLSD-ARKVFDEMSVWDVVSWNSIIESYAKLGKPKVALE 214
Query: 188 LFRDMKRDNGFTVDYFTISTLLTACTGCFVLMEGRAVHAHAIRIGLGANLSVNNALIGFY 247
+F M + G D T+ +L C G+ +H A+ + N+ V N L+ Y
Sbjct: 215 MFSRMTNEFGCRPDNITLVNVLPPCASLGTHSLGKQLHCFAVTSEMIQNMFVGNCLVDMY 274
Query: 248 TKCGRVKDVVALLERMPVMDIITLTEIIIAYMEFGYVDLAVEIFDKMPEK----NSVSYN 303
KCG + + + M V D+++ ++ Y + G + AV +F+KM E+ + V+++
Sbjct: 275 AKCGMMDEANTVFSNMSVKDVVSWNAMVAGYSQIGRFEDAVRLFEKMQEEKIKMDVVTWS 334
Query: 304 ALLAGYCKNGKAMEALGLFVKLLEEGLVLTEFTLTSVVNACGLIMEAKLSEQIHGFVMKF 363
A ++GY + G EALG+ ++L G+ E TL SV++ C + ++IH + +K+
Sbjct: 335 AAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGKEIHCYAIKY 394
Query: 364 -------GLGSNDCIEAALLDMLTRCGRMADAEKMFYRWPTDRDDSIIWTSMICGYARSG 416
G G + + L+DM +C ++ A MF D + WT MI GY++ G
Sbjct: 395 PIDLRKNGHGDENMVINQLIDMYAKCKKVDTARAMFDSLSPKERDVVTWTVMIGGYSQHG 454
Query: 417 KPEHAI-LLFHQSQSEATVVPDEIALTSVLGVCGTLGFHEMGKQIHSYALKTGFSS-DLG 474
A+ LL + + P+ ++ L C +L +GKQIH+YAL+ ++ L
Sbjct: 455 DANKALELLSEMFEEDCQTRPNAFTISCALVACASLAALRIGKQIHAYALRNQQNAVPLF 514
Query: 475 VANSMVSMYFKCCNMSNAIKAFNKMPSHDIVSWNGLIAGHLLHRQGDEALAVWSSMEKAS 534
V+N ++ MY KC ++S+A F+ M + + V+W L+ G+ +H G+EAL ++ M +
Sbjct: 515 VSNCLIDMYAKCGSISDARLVFDNMMAKNEVTWTSLMTGYGMHGYGEEALGIFDEMRRIG 574
Query: 535 IKPDAITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLE 594
K D +T ++++ Y ++ ++D + F MKT++ + P EHYA LV +LG G L
Sbjct: 575 FKLDGVTLLVVL--YACSHSGMIDQGMEYFNRMKTVFGVSPGPEHYACLVDLLGRAGRLN 632
Query: 595 EAEETINNMPFQPKVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYS 654
A I MP +P VW A L CRI +G+ A+ I + +Y L+SNLY+
Sbjct: 633 AALRLIEEMPMEPPPVVWVAFLSCCRIHGKVELGEYAAEKITELASNHDGSYTLLSNLYA 692
Query: 655 SSGRWHNSELVREDMREKGFRKHPSRSWIIHQNKVHSFYVRDKSHPREKDIYSGLEILIL 714
++GRW + +R MR KG +K P SW+ +F+V DK+HP K+IY L +
Sbjct: 693 NAGRWKDVTRIRSLMRHKGVKKRPGCSWVEGIKGTTTFFVGDKTHPHAKEIYQVLLDHMQ 752
Query: 715 ECLKAGYVPDTSFVLHEVEEHQKKDFLFYHSAKLAATYGLLTTPAGQPVRIVKNILTCGD 774
GYVP+T F LH+V++ +K D LF HS KLA YG+LTTP G +RI KN+ CGD
Sbjct: 753 RIKDIGYVPETGFALHDVDDEEKDDLLFEHSEKLALAYGILTTPQGAAIRITKNLRVCGD 812
Query: 775 CHSFLKYVSVVTRREIFLRDASGFHHFLNGQCSCKDYW 812
CH+ Y+S + +I LRD+S FHHF NG CSCK YW
Sbjct: 813 CHTAFTYMSRIIDHDIILRDSSRFHHFKNGSCSCKGYW 850
|
|
| TAIR|locus:2103483 OTP84 "ORGANELLE TRANSCRIPT PROCESSING 84" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 979 (349.7 bits), Expect = 1.5e-125, Sum P(2) = 1.5e-125
Identities = 204/535 (38%), Positives = 311/535 (58%)
Query: 290 IFDKMPEKNSVSYNALLAGYCKNGKAMEALGLFVKLLEE-GLVLTEFTLTSVVNACGLIM 348
+FD M ++ +NA++AGY +N EAL LF+ + E GL+ T+ VV AC
Sbjct: 360 VFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSG 419
Query: 349 EAKLSEQIHGFVMKFGLGSNDCIEAALLDMLTRCGRMADAEKMFYRWPTDRDDSIIWTSM 408
E IHGFV+K GL + ++ L+DM +R G++ A ++F + DRD + W +M
Sbjct: 420 AFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKME-DRD-LVTWNTM 477
Query: 409 ICGYARSGKPEHAILLFHQSQ----------SEATVVPDEIALTSVLGVCGTLGFHEMGK 458
I GY S E A+LL H+ Q S ++ P+ I L ++L C L GK
Sbjct: 478 ITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGK 537
Query: 459 QIHSYALKTGFSSDLGVANSMVSMYFKCCNMSNAIKAFNKMPSHDIVSWNGLIAGHLLHR 518
+IH+YA+K ++D+ V +++V MY KC + + K F+++P ++++WN +I + +H
Sbjct: 538 EIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHG 597
Query: 519 QGDEALAVWSSMEKASIKPDAITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTSE 578
G EA+ + M +KP+ +TF+ + +A ++ + VD ++F MK Y +EP+S+
Sbjct: 598 NGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGM--VDEGLRIFYVMKPDYGVEPSSD 655
Query: 579 HYASLVSVLGYWGFLEEAEETINNMPFQ-PKVSVWRALLDSCRIRLNTTIGKRVAKHILA 637
HYA +V +LG G ++EA + +N MP K W +LL + RI N IG+ A++++
Sbjct: 656 HYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSSLLGASRIHNNLEIGEIAAQNLIQ 715
Query: 638 MEPQDPATYILVSNLYSSSGRWHNSELVREDMREKGFRKHPSRSWIIHQNKVHSFYVRDK 697
+EP + Y+L++N+YSS+G W + VR +M+E+G RK P SWI H ++VH F D
Sbjct: 716 LEPNVASHYVLLANIYSSAGLWDKATEVRRNMKEQGVRKEPGCSWIEHGDEVHKFVAGDS 775
Query: 698 SHPREKDIYSGLEILILECLKAGYVPDTSFVLHEVEEHQKKDFLFYHSAKLAATYGLLTT 757
SHP+ + + LE L K GYVPDTS VLH VEE +K+ L HS KLA +G+L T
Sbjct: 776 SHPQSEKLSGYLETLWERMRKEGYVPDTSCVLHNVEEDEKEILLCGHSEKLAIAFGILNT 835
Query: 758 PAGQPVRIVKNILTCGDCHSFLKYVSVVTRREIFLRDASGFHHFLNGQCSCKDYW 812
G +R+ KN+ C DCH K++S + REI LRD FH F NG CSC DYW
Sbjct: 836 SPGTIIRVAKNLRVCNDCHLATKFISKIVDREIILRDVRRFHRFKNGTCSCGDYW 890
|
|
| TAIR|locus:2124137 DOT4 "DEFECTIVELY ORGANIZED TRIBUTARIES 4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 951 (339.8 bits), Expect = 3.9e-125, Sum P(2) = 3.9e-125
Identities = 191/535 (35%), Positives = 317/535 (59%)
Query: 278 YMEFGYVDLAVEIFDKMPEKNSVSYNALLAGYCKNGKAMEALGLFVKLLEEGLVLTEFTL 337
Y + G +D A +F +M +++ VSY +++AGY + G A EA+ LF ++ EEG+ +T+
Sbjct: 341 YSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTV 400
Query: 338 TSVVNACGLIMEAKLSEQIHGFVMKFGLGSNDCIEAALLDMLTRCGRMADAEKMFYRWPT 397
T+V+N C +++H ++ + LG + + AL+DM +CG M +AE +F
Sbjct: 401 TAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRV 460
Query: 398 DRDDSIIWTSMICGYARSGKPEHAILLFHQSQSEATVVPDEIALTSVLGVCGTLGFHEMG 457
D I W ++I GY+++ A+ LF+ E PDE + VL C +L + G
Sbjct: 461 K--DIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDKG 518
Query: 458 KQIHSYALKTGFSSDLGVANSMVSMYFKCCNMSNAIKAFNKMPSHDIVSWNGLIAGHLLH 517
++IH Y ++ G+ SD VANS+V MY KC + A F+ + S D+VSW +IAG+ +H
Sbjct: 519 REIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIAGYGMH 578
Query: 518 RQGDEALAVWSSMEKASIKPDAITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTS 577
G EA+A+++ M +A I+ D I+FV ++ Y ++ LVD + F M+ IEPT
Sbjct: 579 GFGKEAIALFNQMRQAGIEADEISFVSLL--YACSHSGLVDEGWRFFNIMRHECKIEPTV 636
Query: 578 EHYASLVSVLGYWGFLEEAEETINNMPFQPKVSVWRALLDSCRIRLNTTIGKRVAKHILA 637
EHYA +V +L G L +A I NMP P ++W ALL CRI + + ++VA+ +
Sbjct: 637 EHYACIVDMLARTGDLIKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLAEKVAEKVFE 696
Query: 638 MEPQDPATYILVSNLYSSSGRWHNSELVREDMREKGFRKHPSRSWIIHQNKVHSFYVRDK 697
+EP++ Y+L++N+Y+ + +W + +R+ + ++G RK+P SWI + +V+ F D
Sbjct: 697 LEPENTGYYVLMANIYAEAEKWEQVKRLRKRIGQRGLRKNPGCSWIEIKGRVNIFVAGDS 756
Query: 698 SHPREKDIYSGLEILILECLKAGYVPDTSFVLHEVEEHQKKDFLFYHSAKLAATYGLLTT 757
S+P ++I + L + ++ GY P T + L + EE +K++ L HS KLA G++++
Sbjct: 757 SNPETENIEAFLRKVRARMIEEGYSPLTKYALIDAEEMEKEEALCGHSEKLAMALGIISS 816
Query: 758 PAGQPVRIVKNILTCGDCHSFLKYVSVVTRREIFLRDASGFHHFLNGQCSCKDYW 812
G+ +R+ KN+ CGDCH K++S +TRREI LRD++ FH F +G CSC+ +W
Sbjct: 817 GHGKIIRVTKNLRVCGDCHEMAKFMSKLTRREIVLRDSNRFHQFKDGHCSCRGFW 871
|
|
| TAIR|locus:505006130 AT1G18485 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 848 (303.6 bits), Expect = 6.8e-117, Sum P(2) = 6.8e-117
Identities = 178/550 (32%), Positives = 301/550 (54%)
Query: 265 VMDIITLTEIIIAYMEFGYVDLAVEIFDKMPEKNSVSYNALLAGYCKNGKAMEALGLFVK 324
V + + + +Y + G + A +F + K S+NAL+ G+ ++ +L ++
Sbjct: 427 VYNELVANAFVASYAKCGSLSYAQRVFHGIRSKTVNSWNALIGGHAQSNDPRLSLDAHLQ 486
Query: 325 LLEEGLVLTEFTLTSVVNACGLIMEAKLSEQIHGFVMKFGLGSNDCIEAALLDMLTRCGR 384
+ GL+ FT+ S+++AC + +L +++HGF+++ L + + ++L + CG
Sbjct: 487 MKISGLLPDSFTVCSLLSACSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCGE 546
Query: 385 MADAEKMFYRWPTDRDDSII-WTSMICGYARSGKPEHAILLFHQSQSEATVVPDEIALTS 443
+ + +F D S++ W ++I GY ++G P+ A+ +F Q + I++
Sbjct: 547 LCTVQALF---DAMEDKSLVSWNTVITGYLQNGFPDRALGVFRQMVLYGIQLCG-ISMMP 602
Query: 444 VLGVCGTLGFHEMGKQIHSYALKTGFSSDLGVANSMVSMYFKCCNMSNAIKAFNKMPSHD 503
V G C L +G++ H+YALK D +A S++ MY K +++ + K FN +
Sbjct: 603 VFGACSLLPSLRLGREAHAYALKHLLEDDAFIACSLIDMYAKNGSITQSSKVFNGLKEKS 662
Query: 504 IVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDAITFVLIISAYRYTNLNLVDSCRKL 563
SWN +I G+ +H EA+ ++ M++ PD +TF+ +++A ++ L + + R L
Sbjct: 663 TASWNAMIMGYGIHGLAKEAIKLFEEMQRTGHNPDDLTFLGVLTACNHSGL-IHEGLRYL 721
Query: 564 FLSMKTIYNIEPTSEHYASLVSVLGYWGFLEEAEETI-NNMPFQPKVSVWRALLDSCRIR 622
MK+ + ++P +HYA ++ +LG G L++A + M + V +W++LL SCRI
Sbjct: 722 D-QMKSSFGLKPNLKHYACVIDMLGRAGQLDKALRVVAEEMSEEADVGIWKSLLSSCRIH 780
Query: 623 LNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWHNSELVREDMREKGFRKHPSRSW 682
N +G++VA + +EP+ P Y+L+SNLY+ G+W + VR+ M E RK SW
Sbjct: 781 QNLEMGEKVAAKLFELEPEKPENYVLLSNLYAGLGKWEDVRKVRQRMNEMSLRKDAGCSW 840
Query: 683 IIHQNKVHSFYVRDKSHPREKDIYSGLEILILECLKAGYVPDTSFVLHEVEEHQKKDFLF 742
I KV SF V ++ ++I S IL ++ K GY PDT V H++ E +K + L
Sbjct: 841 IELNRKVFSFVVGERFLDGFEEIKSLWSILEMKISKMGYRPDTMSVQHDLSEEEKIEQLR 900
Query: 743 YHSAKLAATYGLLTTPAGQPVRIVKNILTCGDCHSFLKYVSVVTRREIFLRDASGFHHFL 802
HS KLA TYGL+ T G +R+ KN+ C DCH+ K +S V REI +RD FHHF
Sbjct: 901 GHSEKLALTYGLIKTSEGTTIRVYKNLRICVDCHNAAKLISKVMEREIVVRDNKRFHHFK 960
Query: 803 NGQCSCKDYW 812
NG CSC DYW
Sbjct: 961 NGVCSCGDYW 970
|
|
| TAIR|locus:2205200 OTP82 "AT1G08070" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1149 (409.5 bits), Expect = 1.3e-116, P = 1.3e-116
Identities = 243/718 (33%), Positives = 405/718 (56%)
Query: 100 HSFVAILTACIRLLELELGFQIHALIVKMGCVDSVFVTNALMG---LYGKFSFCLDYLLK 156
H +++L C L L + IHA ++K+G ++ + + L+ L F L Y +
Sbjct: 34 HPSLSLLHNCKTLQSLRI---IHAQMIKIGLHNTNYALSKLIEFCILSPHFEG-LPYAIS 89
Query: 157 LFDELPHKDTVSWNTVISSVVNEFEYEKAFELFRDMKRDNGFTVDYFTISTLLTACTGCF 216
+F + + + WNT+ + A +L+ M G + +T +L +C
Sbjct: 90 VFKTIQEPNLLIWNTMFRGHALSSDPVSALKLYVCMI-SLGLLPNSYTFPFVLKSCAKSK 148
Query: 217 VLMEGRAVHAHAIRIGLGANLSVNNALIGFYTKCGRVKDVVALLERMPVMDIITLTEIII 276
EG+ +H H +++G +L V+ +LI Y + GR++D + ++ P D+++ T +I
Sbjct: 149 AFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSYTALIK 208
Query: 277 AYMEFGYVDLAVEIFDKMPEKNSVSYNALLAGYCKNGKAMEALGLFVKLLEEGLVLTEFT 336
Y GY++ A ++FD++P K+ VS+NA+++GY + G EAL LF +++ + E T
Sbjct: 209 GYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDEST 268
Query: 337 LTSVVNACGLIMEAKLSEQIHGFVMKFGLGSNDCIEAALLDMLTRCGRMADAEKMFYRWP 396
+ +VV+AC +L Q+H ++ G GSN I AL+D+ ++CG + A +F R P
Sbjct: 269 MVTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFERLP 328
Query: 397 TDRDDSIIWTSMICGYARSGKPEHAILLFHQSQSEATVVPDEIALTSVLGVCGTLGFHEM 456
D I W ++I GY + A+LLF Q + P+++ + S+L C LG ++
Sbjct: 329 YK--DVISWNTLIGGYTHMNLYKEALLLF-QEMLRSGETPNDVTMLSILPACAHLGAIDI 385
Query: 457 GKQIHSYALKT--GFSSDLGVANSMVSMYFKCCNMSNAIKAFNKMPSHDIVSWNGLIAGH 514
G+ IH Y K G ++ + S++ MY KC ++ A + FN + + SWN +I G
Sbjct: 386 GRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGF 445
Query: 515 LLHRQGDEALAVWSSMEKASIKPDAITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIE 574
+H + D + ++S M K I+PD ITFV ++SA ++ + +D R +F +M Y +
Sbjct: 446 AMHGRADASFDLFSRMRKIGIQPDDITFVGLLSACSHSGM--LDLGRHIFRTMTQDYKMT 503
Query: 575 PTSEHYASLVSVLGYWGFLEEAEETINNMPFQPKVSVWRALLDSCRIRLNTTIGKRVAKH 634
P EHY ++ +LG+ G +EAEE IN M +P +W +LL +C++ N +G+ A++
Sbjct: 504 PKLEHYGCMIDLLGHSGLFKEAEEMINMMEMEPDGVIWCSLLKACKMHGNVELGESFAEN 563
Query: 635 ILAMEPQDPATYILVSNLYSSSGRWHNSELVREDMREKGFRKHPSRSWIIHQNKVHSFYV 694
++ +EP++P +Y+L+SN+Y+S+GRW+ R + +KG +K P S I + VH F +
Sbjct: 564 LIKIEPENPGSYVLLSNIYASAGRWNEVAKTRALLNDKGMKKVPGCSSIEIDSVVHEFII 623
Query: 695 RDKSHPREKDIYSGLEILILECLKAGYVPDTSFVLHEVEEHQKKDFLFYHSAKLAATYGL 754
DK HPR ++IY LE + + KAG+VPDTS VL E+EE K+ L +HS KLA +GL
Sbjct: 624 GDKFHPRNREIYGMLEEMEVLLEKAGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGL 683
Query: 755 LTTPAGQPVRIVKNILTCGDCHSFLKYVSVVTRREIFLRDASGFHHFLNGQCSCKDYW 812
++T G + IVKN+ C +CH K +S + +REI RD + FHHF +G CSC DYW
Sbjct: 684 ISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFRDGVCSCNDYW 741
|
|
| TAIR|locus:2131939 MEF29 "AT4G30700" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 885 (316.6 bits), Expect = 1.1e-114, Sum P(2) = 1.1e-114
Identities = 186/542 (34%), Positives = 302/542 (55%)
Query: 271 LTEIIIAYMEFGYVDLAVEIFDKMPEKNSVSYNALLAGYCKNGKAMEALGLFVKLLEEGL 330
LT I Y + G + + +F + + + V+YNA++ GY NG+ +L LF +L+ G
Sbjct: 259 LTGFISLYSKCGKIKMGSALFREFRKPDIVAYNAMIHGYTSNGETELSLSLFKELMLSGA 318
Query: 331 VLTEFTLTSVVNACGLIMEAKLSEQIHGFVMKFGLGSNDCIEAALLDMLTRCGRMADAEK 390
L TL S+V G +M L IHG+ +K S+ + AL + ++ + A K
Sbjct: 319 RLRSSTLVSLVPVSGHLM---LIYAIHGYCLKSNFLSHASVSTALTTVYSKLNEIESARK 375
Query: 391 MFYRWPTDRDDSIIWTSMICGYARSGKPEHAILLFHQSQSEATVVPDEIALTSVLGVCGT 450
+F P S W +MI GY ++G E AI LF + Q ++ P+ + +T +L C
Sbjct: 376 LFDESPEKSLPS--WNAMISGYTQNGLTEDAISLFREMQ-KSEFSPNPVTITCILSACAQ 432
Query: 451 LGFHEMGKQIHSYALKTGFSSDLGVANSMVSMYFKCCNMSNAIKAFNKMPSHDIVSWNGL 510
LG +GK +H T F S + V+ +++ MY KC +++ A + F+ M + V+WN +
Sbjct: 433 LGALSLGKWVHDLVRSTDFESSIYVSTALIGMYAKCGSIAEARRLFDLMTKKNEVTWNTM 492
Query: 511 IAGHLLHRQGDEALAVWSSMEKASIKPDAITFVLIISAYRYTNLNLVDSCRKLFLSMKTI 570
I+G+ LH QG EAL ++ M + I P +TF+ ++ Y ++ LV ++F SM
Sbjct: 493 ISGYGLHGQGQEALNIFYEMLNSGITPTPVTFLCVL--YACSHAGLVKEGDEIFNSMIHR 550
Query: 571 YNIEPTSEHYASLVSVLGYWGFLEEAEETINNMPFQPKVSVWRALLDSCRIRLNTTIGKR 630
Y EP+ +HYA +V +LG G L+ A + I M +P SVW LL +CRI +T + +
Sbjct: 551 YGFEPSVKHYACMVDILGRAGHLQRALQFIEAMSIEPGSSVWETLLGACRIHKDTNLART 610
Query: 631 VAKHILAMEPQDPATYILVSNLYSSSGRWHNSELVREDMREKGFRKHPSRSWIIHQNKVH 690
V++ + ++P + ++L+SN++S+ + + VR+ +++ K P + I H
Sbjct: 611 VSEKLFELDPDNVGYHVLLSNIHSADRNYPQAATVRQTAKKRKLAKAPGYTLIEIGETPH 670
Query: 691 SFYVRDKSHPREKDIYSGLEILILECLKAGYVPDTSFVLHEVEEHQKKDFLFYHSAKLAA 750
F D+SHP+ K+IY LE L + +AGY P+T LH+VEE +++ + HS +LA
Sbjct: 671 VFTSGDQSHPQVKEIYEKLEKLEGKMREAGYQPETELALHDVEEEERELMVKVHSERLAI 730
Query: 751 TYGLLTTPAGQPVRIVKNILTCGDCHSFLKYVSVVTRREIFLRDASGFHHFLNGQCSCKD 810
+GL+ T G +RI+KN+ C DCH+ K +S +T R I +RDA+ FHHF +G CSC D
Sbjct: 731 AFGLIATEPGTEIRIIKNLRVCLDCHTVTKLISKITERVIVVRDANRFHHFKDGVCSCGD 790
Query: 811 YW 812
YW
Sbjct: 791 YW 792
|
|
| TAIR|locus:2205425 AT1G68930 "AT1G68930" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1044 (372.6 bits), Expect = 1.0e-111, Sum P(2) = 1.0e-111
Identities = 221/680 (32%), Positives = 368/680 (54%)
Query: 133 SVFVTNALMGLYGKFSFCLDYLLKLFDELPHKDTVSWNTVISSVVNEFEYEKAFELFRDM 192
++F N L+ Y K + + F++LP +D V+WN +I A + + M
Sbjct: 71 NLFSWNNLLLAYSKAGL-ISEMESTFEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNTM 129
Query: 193 KRDNGFTVDYFTISTLLTACTGCFVLMEGRAVHAHAIRIGLGANLSVNNALIGFYTKCGR 252
RD + T+ T+L + + G+ +H I++G + L V + L+ Y G
Sbjct: 130 MRDFSANLTRVTLMTMLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLYMYANVGC 189
Query: 253 VKDVVALLERMPVMDIITLTEIIIAYMEFGYVDLAVEIFDKMPEKNSVSYNALLAGYCKN 312
+ D + + + + ++ + G ++ A+++F M EK+SVS+ A++ G +N
Sbjct: 190 ISDAKKVFYGLDDRNTVMYNSLMGGLLACGMIEDALQLFRGM-EKDSVSWAAMIKGLAQN 248
Query: 313 GKAMEALGLFVKLLEEGLVLTEFTLTSVVNACGLIMEAKLSEQIHGFVMKFGLGSNDCIE 372
G A EA+ F ++ +GL + ++ SV+ ACG + +QIH +++ + +
Sbjct: 249 GLAKEAIECFREMKVQGLKMDQYPFGSVLPACGGLGAINEGKQIHACIIRTNFQDHIYVG 308
Query: 373 AALLDMLTRCGRMADAEKMFYRWPTDRDDSIIWTSMICGYARSGKPEHAILLFHQSQSEA 432
+AL+DM +C + A+ +F R + + + WT+M+ GY ++G+ E A+ +F Q
Sbjct: 309 SALIDMYCKCKCLHYAKTVFDRMK--QKNVVSWTAMVVGYGQTGRAEEAVKIFLDMQRSG 366
Query: 433 TVVPDEIALTSVLGVCGTLGFHEMGKQIHSYALKTGFSSDLGVANSMVSMYFKCCNMSNA 492
+ PD L + C + E G Q H A+ +G + V+NS+V++Y KC ++ ++
Sbjct: 367 -IDPDHYTLGQAISACANVSSLEEGSQFHGKAITSGLIHYVTVSNSLVTLYGKCGDIDDS 425
Query: 493 IKAFNKMPSHDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDAITFVLIISAYRYT 552
+ FN+M D VSW +++ + + E + ++ M + +KPD +T +ISA +
Sbjct: 426 TRLFNEMNVRDAVSWTAMVSAYAQFGRAVETIQLFDKMVQHGLKPDGVTLTGVISAC--S 483
Query: 553 NLNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLEEAEETINNMPFQPKVSVW 612
LV+ ++ F M + Y I P+ HY+ ++ + G LEEA IN MPF P W
Sbjct: 484 RAGLVEKGQRYFKLMTSEYGIVPSIGHYSCMIDLFSRSGRLEEAMRFINGMPFPPDAIGW 543
Query: 613 RALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWHNSELVREDMREK 672
LL +CR + N IGK A+ ++ ++P PA Y L+S++Y+S G+W + +R MREK
Sbjct: 544 TTLLSACRNKGNLEIGKWAAESLIELDPHHPAGYTLLSSIYASKGKWDSVAQLRRGMREK 603
Query: 673 GFRKHPSRSWIIHQNKVHSFYVRDKSHPREKDIYSGLEILILECLKAGYVPDTSFVLHEV 732
+K P +SWI + K+HSF D+S P IY+ LE L + + GY PDTSFV H+V
Sbjct: 604 NVKKEPGQSWIKWKGKLHSFSADDESSPYLDQIYAKLEELNNKIIDNGYKPDTSFVHHDV 663
Query: 733 EEHQKKDFLFYHSAKLAATYGLLTTPAGQPVRIVKNILTCGDCHSFLKYVSVVTRREIFL 792
EE K L YHS +LA +GL+ P+GQP+R+ KN+ C DCH+ K++S VT REI +
Sbjct: 664 EEAVKVKMLNYHSERLAIAFGLIFVPSGQPIRVGKNLRVCVDCHNATKHISSVTGREILV 723
Query: 793 RDASGFHHFLNGQCSCKDYW 812
RDA FH F +G CSC D+W
Sbjct: 724 RDAVRFHRFKDGTCSCGDFW 743
|
|
| TAIR|locus:2125899 AT4G33170 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 979 (349.7 bits), Expect = 5.6e-109, Sum P(2) = 5.6e-109
Identities = 218/647 (33%), Positives = 354/647 (54%)
Query: 171 TVISSVVNEFEYEKAFELFRDMKRDNGFTVDYFTISTLLTACTGCFVLMEGRAVHAHAIR 230
TV +S++N + + F R + DN D + ++++ + +E + +R
Sbjct: 351 TVSNSLINMYCKLRKFGFARTVF-DNMSERDLISWNSVIAGIAQNGLEVEAVCLFMQLLR 409
Query: 231 IGLGAN----LSVNNALIGFYTKCGRVKDV-VALLERMPVMDIITLTEIIIAYMEFGYVD 285
GL + SV A K V V ++ V D T +I AY +
Sbjct: 410 CGLKPDQYTMTSVLKAASSLPEGLSLSKQVHVHAIKINNVSDSFVSTALIDAYSRNRCMK 469
Query: 286 LAVEIFDKMPEKNSVSYNALLAGYCKNGKAMEALGLFVKLLEEGLVLTEFTLTSVVNACG 345
A +F++ + V++NA++AGY ++ + L LF + ++G +FTL +V CG
Sbjct: 470 EAEILFERH-NFDLVAWNAMMAGYTQSHDGHKTLKLFALMHKQGERSDDFTLATVFKTCG 528
Query: 346 LIMEAKLSEQIHGFVMKFGLGSNDCIEAALLDMLTRCGRMADAEKMFYRWPTDRDDSIIW 405
+ +Q+H + +K G + + + +LDM +CG M+ A+ F P D + W
Sbjct: 529 FLFAINQGKQVHAYAIKSGYDLDLWVSSGILDMYVKCGDMSAAQFAFDSIPVP--DDVAW 586
Query: 406 TSMICGYARSGKPEHAILLFHQSQSEATVVPDEIALTSVLGVCGTLGFHEMGKQIHSYAL 465
T+MI G +G+ E A +F Q + V+PDE + ++ L E G+QIH+ AL
Sbjct: 587 TTMISGCIENGEEERAFHVFSQMRLMG-VLPDEFTIATLAKASSCLTALEQGRQIHANAL 645
Query: 466 KTGFSSDLGVANSMVSMYFKCCNMSNAIKAFNKMPSHDIVSWNGLIAGHLLHRQGDEALA 525
K ++D V S+V MY KC ++ +A F ++ +I +WN ++ G H +G E L
Sbjct: 646 KLNCTNDPFVGTSLVDMYAKCGSIDDAYCLFKRIEMMNITAWNAMLVGLAQHGEGKETLQ 705
Query: 526 VWSSMEKASIKPDAITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYASLVS 585
++ M+ IKPD +TF+ ++SA ++ L V K SM Y I+P EHY+ L
Sbjct: 706 LFKQMKSLGIKPDKVTFIGVLSACSHSGL--VSEAYKHMRSMHGDYGIKPEIEHYSCLAD 763
Query: 586 VLGYWGFLEEAEETINNMPFQPKVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPAT 645
LG G +++AE I +M + S++R LL +CR++ +T GKRVA +L +EP D +
Sbjct: 764 ALGRAGLVKQAENLIESMSMEASASMYRTLLAACRVQGDTETGKRVATKLLELEPLDSSA 823
Query: 646 YILVSNLYSSSGRWHNSELVREDMREKGFRKHPSRSWIIHQNKVHSFYVRDKSHPREKDI 705
Y+L+SN+Y+++ +W +L R M+ +K P SWI +NK+H F V D+S+ + + I
Sbjct: 824 YVLLSNMYAAASKWDEMKLARTMMKGHKVKKDPGFSWIEVKNKIHIFVVDDRSNRQTELI 883
Query: 706 YSGLEILILECLKAGYVPDTSFVLHEVEEHQKKDFLFYHSAKLAATYGLLTTPAGQPVRI 765
Y ++ +I + + GYVP+T F L +VEE +K+ L+YHS KLA +GLL+TP P+R+
Sbjct: 884 YRKVKDMIRDIKQEGYVPETDFTLVDVEEEEKERALYYHSEKLAVAFGLLSTPPSTPIRV 943
Query: 766 VKNILTCGDCHSFLKYVSVVTRREIFLRDASGFHHFLNGQCSCKDYW 812
+KN+ CGDCH+ +KY++ V REI LRDA+ FH F +G CSC DYW
Sbjct: 944 IKNLRVCGDCHNAMKYIAKVYNREIVLRDANRFHRFKDGICSCGDYW 990
|
|
| TAIR|locus:2083631 AT3G15130 "AT3G15130" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 812 (290.9 bits), Expect = 7.2e-107, Sum P(2) = 7.2e-107
Identities = 181/549 (32%), Positives = 300/549 (54%)
Query: 274 IIIAYMEFGYVDLAVEIFDKMPEKNSVSYNALLAGYCKNGKAMEALGLFVKLLEEGLVLT 333
++ Y + G ++ A ++F ++ +++ +S+NA++AG+ G +AL F + E +
Sbjct: 148 LVDMYSKCGRINEAEKVFRRIVDRSLISWNAMIAGFVHAGYGSKALDTFGMMQEANIKER 207
Query: 334 --EFTLTSVVNACGLIMEAKLSEQIHGFVMKFGLG--SNDCIEAALLDMLTRCGRMADAE 389
EFTLTS++ AC +QIHGF+++ G S+ I +L+D+ +CG + A
Sbjct: 208 PDEFTLTSLLKACSSTGMIYAGKQIHGFLVRSGFHCPSSATITGSLVDLYVKCGYLFSAR 267
Query: 390 KMFYRWPTDRDDSIIWTSMICGYARSGKPEHAILLFHQSQSEATVVPDEIALTSVLGVCG 449
K F + I W+S+I GYA+ G+ A+ LF + Q + + D AL+S++GV
Sbjct: 268 KAFDQ--IKEKTMISWSSLILGYAQEGEFVEAMGLFKRLQELNSQI-DSFALSSIIGVFA 324
Query: 450 TLGFHEMGKQIHSYALKTGFSSDLGVANSMVSMYFKCCNMSNAIKAFNKMPSHDIVSWNG 509
GKQ+ + A+K + V NS+V MY KC + A K F +M D++SW
Sbjct: 325 DFALLRQGKQMQALAVKLPSGLETSVLNSVVDMYLKCGLVDEAEKCFAEMQLKDVISWTV 384
Query: 510 LIAGHLLHRQGDEALAVWSSMEKASIKPDAITFVLIISAYRYTNLNLVDSCRKLFLSMKT 569
+I G+ H G +++ ++ M + +I+PD + ++ ++SA ++ + + +LF +
Sbjct: 385 VITGYGKHGLGKKSVRIFYEMLRHNIEPDEVCYLAVLSACSHSGM--IKEGEELFSKLLE 442
Query: 570 IYNIEPTSEHYASLVSVLGYWGFLEEAEETINNMPFQPKVSVWRALLDSCRIRLNTTIGK 629
+ I+P EHYA +V +LG G L+EA+ I+ MP +P V +W+ LL CR+ + +GK
Sbjct: 443 THGIKPRVEHYACVVDLLGRAGRLKEAKHLIDTMPIKPNVGIWQTLLSLCRVHGDIELGK 502
Query: 630 RVAKHILAMEPQDPATYILVSNLYSSSGRWHNSELVREDMREKGFRKHPSRSWIIHQNKV 689
V K +L ++ ++PA Y+++SNLY +G W+ RE KG +K SW+ + +V
Sbjct: 503 EVGKILLRIDAKNPANYVMMSNLYGQAGYWNEQGNARELGNIKGLKKEAGMSWVEIEREV 562
Query: 690 HSFYVRDKSHPREKDIYSGL---EILILECLKAGYVPDTSFVLHEVEEHQKKDFLFYHSA 746
H F + SHP I L E + E L GYV LH++++ K++ L HS
Sbjct: 563 HFFRSGEDSHPLTPVIQETLKEAERRLREEL--GYVYGLKHELHDIDDESKEENLRAHSE 620
Query: 747 KLAATYGLLT---TPAGQPVRIVKNILTCGDCHSFLKYVSVVTRREIFLRDASGFHHFLN 803
KLA L T G+ +R+ KN+ C DCH F+K +S +T+ +RDA FH F +
Sbjct: 621 KLAIGLALATGGLNQKGKTIRVFKNLRVCVDCHEFIKGLSKITKIAYVVRDAVRFHSFED 680
Query: 804 GQCSCKDYW 812
G CSC DYW
Sbjct: 681 GCCSCGDYW 689
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|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9FFN1 | PP363_ARATH | No assigned EC number | 0.6012 | 0.9987 | 0.9051 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 812 | |||
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-149 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-137 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-75 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 8e-65 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 4e-51 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 5e-46 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 8e-31 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 4e-25 | |
| pfam14432 | 116 | pfam14432, DYW_deaminase, DYW family of nucleic ac | 1e-21 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-10 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-08 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-08 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 5e-08 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-07 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 3e-07 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-07 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 7e-07 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-06 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 2e-06 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 9e-06 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 2e-05 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 4e-04 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 4e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 6e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 6e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.001 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 0.004 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 459 bits (1182), Expect = e-149
Identities = 251/780 (32%), Positives = 418/780 (53%), Gaps = 47/780 (6%)
Query: 34 RFGNPLISAYLKLGHVADAYKIFYGLSSPNVVSFTSLISGLAKLGREEEAIELFFRMRSE 93
R GN ++S +++ G + A+ +F + ++ S+ L+ G AK G +EA+ L+ RM
Sbjct: 122 RLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWA 181
Query: 94 GIVPNEHSFVAILTACIRLLELELGFQIHALIVKMGCVDSVFVTNALMGLYGKFSFCLDY 153
G+ P+ ++F +L C + +L G ++HA +V+ G V V NAL+ +Y K C D
Sbjct: 182 GVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVK---CGDV 238
Query: 154 LL--KLFDELPHKDTVSWNTVISSVVNEFEYEKAFELFRDMKRDNGFTVDYFTISTLLTA 211
+ +FD +P +D +SWN +IS E + ELF M R+ D TI+++++A
Sbjct: 239 VSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTM-RELSVDPDLMTITSVISA 297
Query: 212 CTGCFVLMEGRAVHAHAIRIGLGANLSVNNALIGFYTKCGRVKDVVALLERMPVMDIITL 271
C GR +H + ++ G ++SV N+LI Y G +
Sbjct: 298 CELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGE---------------- 341
Query: 272 TEIIIAYMEFGYVDLAVEIFDKMPEKNSVSYNALLAGYCKNGKAMEALGLFVKLLEEGLV 331
A ++F +M K++VS+ A+++GY KNG +AL + + ++ +
Sbjct: 342 ---------------AEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVS 386
Query: 332 LTEFTLTSVVNACGLIMEAKLSEQIHGFVMKFGLGSNDCIEAALLDMLTRCGRMADAEKM 391
E T+ SV++AC + + + ++H + GL S + AL++M ++C + A ++
Sbjct: 387 PDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEV 446
Query: 392 FYRWPTDRDDSIIWTSMICGYARSGKPEHAILLFHQSQSEATVVPDEIALTSVLGVCGTL 451
F+ P D I WTS+I G + + A++ F Q T+ P+ + L + L C +
Sbjct: 447 FHNIP--EKDVISWTSIIAGLRLNNRCFEALIFFRQML--LTLKPNSVTLIAALSACARI 502
Query: 452 GFHEMGKQIHSYALKTGFSSDLGVANSMVSMYFKCCNMSNAIKAFNKMPSHDIVSWNGLI 511
G GK+IH++ L+TG D + N+++ +Y +C M+ A FN D+VSWN L+
Sbjct: 503 GALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFN-SHEKDVVSWNILL 561
Query: 512 AGHLLHRQGDEALAVWSSMEKASIKPDAITFVLIISAYRYTNLNLVDSCRKLFLSMKTIY 571
G++ H +G A+ +++ M ++ + PD +TF+ ++ A + +V + F SM+ Y
Sbjct: 562 TGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCA--CSRSGMVTQGLEYFHSMEEKY 619
Query: 572 NIEPTSEHYASLVSVLGYWGFLEEAEETINNMPFQPKVSVWRALLDSCRIRLNTTIGKRV 631
+I P +HYA +V +LG G L EA IN MP P +VW ALL++CRI + +G+
Sbjct: 620 SITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELA 679
Query: 632 AKHILAMEPQDPATYILVSNLYSSSGRWHNSELVREDMREKGFRKHPSRSWIIHQNKVHS 691
A+HI ++P YIL+ NLY+ +G+W VR+ MRE G P SW+ + KVH+
Sbjct: 680 AQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHA 739
Query: 692 FYVRDKSHPREKDIYSGLEILILECLKA-GYVPDTSFVLHEVEEHQKKDFLFYHSAKLAA 750
F D+SHP+ K+I + LE E +KA G S + E+E K D HS +LA
Sbjct: 740 FLTDDESHPQIKEINTVLE-GFYEKMKASGLAGSESSSMDEIEV-SKDDIFCGHSERLAI 797
Query: 751 TYGLLTTPAGQPVRIVKNILTCGDCHSFLKYVSVVTRREIFLRDASGFHHFLNGQCSCKD 810
+GL+ T G P+ + KN+ C +CH+ +K++S + RREI +RD FHHF +G+CSC D
Sbjct: 798 AFGLINTVPGMPIWVTKNLYMCENCHNTVKFISKIVRREISVRDTEQFHHFKDGECSCGD 857
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 423 bits (1089), Expect = e-137
Identities = 211/655 (32%), Positives = 350/655 (53%), Gaps = 38/655 (5%)
Query: 159 DELPHKDTVSWNTVISSVVNEFEYEKAFELFRDMKRDNGFTVDYFTISTLLTACTGCFVL 218
D K VS + I +V + +A ELF ++ FT+ T L+ AC +
Sbjct: 80 DTQIRKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSI 139
Query: 219 MEGRAVHAHAIRIGLGANLSVNNALIGFYTKCGRVKDVVALLERMPVMDIITLTEIIIAY 278
+AV+ H G + + N ++ + KCG + D
Sbjct: 140 RCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLID----------------------- 176
Query: 279 MEFGYVDLAVEIFDKMPEKNSVSYNALLAGYCKNGKAMEALGLFVKLLEEGLVLTEFTLT 338
A +FD+MPE+N S+ ++ G G EA LF ++ E+G T
Sbjct: 177 --------ARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFV 228
Query: 339 SVVNACGLIMEAKLSEQIHGFVMKFGLGSNDCIEAALLDMLTRCGRMADAEKMFYRWPTD 398
++ A + A+ +Q+H V+K G+ + + AL+DM ++CG + DA +F P
Sbjct: 229 VMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP-- 286
Query: 399 RDDSIIWTSMICGYARSGKPEHAILLFHQSQSEATVVPDEIALTSVLGVCGTLGFHEMGK 458
++ W SM+ GYA G E A+ L++ ++ V D+ + ++ + L E K
Sbjct: 287 EKTTVAWNSMLAGYALHGYSEEALCLYY-EMRDSGVSIDQFTFSIMIRIFSRLALLEHAK 345
Query: 459 QIHSYALKTGFSSDLGVANS-MVSMYFKCCNMSNAIKAFNKMPSHDIVSWNGLIAGHLLH 517
Q H+ ++TGF D+ VAN+ +V +Y K M +A F++MP +++SWN LIAG+ H
Sbjct: 346 QAHAGLIRTGFPLDI-VANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNH 404
Query: 518 RQGDEALAVWSSMEKASIKPDAITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTS 577
+G +A+ ++ M + P+ +TF+ ++SA RY+ L + ++F SM + I+P +
Sbjct: 405 GRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGL--SEQGWEIFQSMSENHRIKPRA 462
Query: 578 EHYASLVSVLGYWGFLEEAEETINNMPFQPKVSVWRALLDSCRIRLNTTIGKRVAKHILA 637
HYA ++ +LG G L+EA I PF+P V++W ALL +CRI N +G+ A+ +
Sbjct: 463 MHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG 522
Query: 638 MEPQDPATYILVSNLYSSSGRWHNSELVREDMREKGFRKHPSRSWIIHQNKVHSFYVRDK 697
M P+ Y+++ NLY+SSGR + V E ++ KG HP+ +WI + + HSF+ D+
Sbjct: 523 MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDR 582
Query: 698 SHPREKDIYSGLEILILECLKAGYVPDTSFVLHEVEEHQKKDFLFYHSAKLAATYGLLTT 757
HP+ ++IY L+ L+ E + GYV + + +L +V+E ++K YHS KLA +GL+ T
Sbjct: 583 LHPQSREIYQKLDELMKEISEYGYVAEENELLPDVDEDEEKVSGRYHSEKLAIAFGLINT 642
Query: 758 PAGQPVRIVKNILTCGDCHSFLKYVSVVTRREIFLRDASGFHHFLNGQCSCKDYW 812
P++I ++ C DCH +K++++VT+REI +RDAS FHHF G+CSC DYW
Sbjct: 643 SEWTPLQITQSHRICKDCHKVIKFIALVTKREIVVRDASRFHHFKLGKCSCGDYW 697
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 262 bits (671), Expect = 1e-75
Identities = 143/490 (29%), Positives = 249/490 (50%), Gaps = 38/490 (7%)
Query: 60 SSPNVVSFT-SLISGLAKLGREEEAIELFFRMRSEGIVPNEHSFVAILTACIRLLELELG 118
SS + + S + L G+ E+A++L M+ + +E ++VA+ C +E G
Sbjct: 46 SSSSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEG 105
Query: 119 FQIHALIVKMGCVDSVFVTNALMGLYGKFSFCLDYLLKLFDELPHKDTVSWNTVISSVVN 178
++ + + V + NA++ ++ +F + +F ++P +D SWN ++
Sbjct: 106 SRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVH-AWYVFGKMPERDLFSWNVLVGGYAK 164
Query: 179 EFEYEKAFELFRDMKRDNGFTVDYFTISTLLTACTGCFVLMEGRAVHAHAIRIGLGANLS 238
+++A L+ M G D +T +L C G L GR VHAH +R G ++
Sbjct: 165 AGYFDEALCLYHRMLW-AGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVD 223
Query: 239 VNNALIGFYTKCGRVKDVVALLERMPVMDIITLTEIIIAYMEFGYVDLAVEIFDKMPEKN 298
V NALI Y KCG V + +RMP D I
Sbjct: 224 VVNALITMYVKCGDVVSARLVFDRMPRRDCI----------------------------- 254
Query: 299 SVSYNALLAGYCKNGKAMEALGLFVKLLEEGLVLTEFTLTSVVNACGLIMEAKLSEQIHG 358
S+NA+++GY +NG+ +E L LF + E + T+TSV++AC L+ + +L ++HG
Sbjct: 255 --SWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHG 312
Query: 359 FVMKFGLGSNDCIEAALLDMLTRCGRMADAEKMFYRWPTDRDDSIIWTSMICGYARSGKP 418
+V+K G + + +L+ M G +AEK+F R + D++ WT+MI GY ++G P
Sbjct: 313 YVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSR--METKDAVSWTAMISGYEKNGLP 370
Query: 419 EHAILLFHQSQSEATVVPDEIALTSVLGVCGTLGFHEMGKQIHSYALKTGFSSDLGVANS 478
+ A+ + + + V PDEI + SVL C LG ++G ++H A + G S + VAN+
Sbjct: 371 DKALETYALMEQD-NVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANA 429
Query: 479 MVSMYFKCCNMSNAIKAFNKMPSHDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPD 538
++ MY KC + A++ F+ +P D++SW +IAG L+ + EAL + M ++KP+
Sbjct: 430 LIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQM-LLTLKPN 488
Query: 539 AITFVLIISA 548
++T + +SA
Sbjct: 489 SVTLIAALSA 498
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 232 bits (593), Expect = 8e-65
Identities = 153/533 (28%), Positives = 251/533 (47%), Gaps = 46/533 (8%)
Query: 11 CG---EVSLAKAIHASLIKLLLEQDTRFGNPLISAYLKLGHVADAYKIFYGLSSPNVVSF 67
CG +++ + +HA +++ E D N LI+ Y+K G V A +F + + +S+
Sbjct: 197 CGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISW 256
Query: 68 TSLISGLAKLGREEEAIELFFRMRSEGIVPNEHSFVAILTACIRLLELELGFQIHALIVK 127
++ISG + G E +ELFF MR + P+ + ++++AC L + LG ++H +VK
Sbjct: 257 NAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVK 316
Query: 128 MGCVDSVFVTNALMGLYGKFSFCLDYLLKLFDELPHKDTVSWNTVISSVVNEFEYEKAFE 187
G V V N+L+ +Y K+F + KD VSW +IS +KA E
Sbjct: 317 TGFAVDVSVCNSLIQMYLSLG-SWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALE 375
Query: 188 LFRDMKRDNGFTVDYFTISTLLTACTGCFVLMEGRAVHAHAIRIGLGANLSVNNALIGFY 247
+ M++DN + D TI+++L+AC L G +H A R GL + + V NALI Y
Sbjct: 376 TYALMEQDN-VSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMY 434
Query: 248 TKCGRVKDVVALLERMPVMDIITLTEIIIAYMEFGYVDLAVEIFDKMPEKNSVSYNALLA 307
+KC +D A+E+F +PEK+ +S+ +++A
Sbjct: 435 SKCKC-------------------------------IDKALEVFHNIPEKDVISWTSIIA 463
Query: 308 GYCKNGKAMEALGLFVKLLEEGLVLTEFTLTSVVNACGLIMEAKLSEQIHGFVMKFGLGS 367
G N + EAL F ++L L TL + ++AC I ++IH V++ G+G
Sbjct: 464 GLRLNNRCFEALIFFRQMLLT-LKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGF 522
Query: 368 NDCIEAALLDMLTRCGRMADAEKMFYRWPTDRDDSIIWTSMICGYARSGKPEHAILLFHQ 427
+ + ALLD+ RCGRM A F + D + W ++ GY GK A+ LF++
Sbjct: 523 DGFLPNALLDLYVRCGRMNYAWNQF---NSHEKDVVSWNILLTGYVAHGKGSMAVELFNR 579
Query: 428 SQSEATVVPDEIALTSVLGVCGTLGFHEMGKQI-HSYALKTGFSSDLGVANSMVSMYFKC 486
E+ V PDE+ S+L C G G + HS K + +L +V + +
Sbjct: 580 -MVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRA 638
Query: 487 CNMSNAIKAFNKMP-SHDIVSWNGLIAGHLLHRQ---GDEALAVWSSMEKASI 535
++ A NKMP + D W L+ +HR G+ A ++ S+
Sbjct: 639 GKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSV 691
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 190 bits (484), Expect = 4e-51
Identities = 108/396 (27%), Positives = 185/396 (46%), Gaps = 56/396 (14%)
Query: 13 EVSLAKAIHASLIKLLLEQDTRFGNPLISAYLKLGHVADAYKIFYGLSSPNVVSFTSLIS 72
+ KA++ + E D N ++ ++K G + DA ++F + N+ S+ ++I
Sbjct: 138 SIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIG 197
Query: 73 GLAKLGREEEAIELFFRMRSEGIVPNEHSFVAILTACIRLLELELGFQIHALIVKMGCVD 132
GL G EA LF M +G +FV +L A L G Q+H ++K G V
Sbjct: 198 GLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVG 257
Query: 133 SVFVTNALMGLYGKFSFC--LDYLLKLFDELPHKDTVSWNTVISSVVNEFEYEKAFELFR 190
FV+ AL+ +Y K C ++ +FD +P K TV+WN++++ E+A L+
Sbjct: 258 DTFVSCALIDMYSK---CGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYY 314
Query: 191 DMKRDNGFTVDYFTISTLLTACTGCFVLMEGRAVHAHAIRIGLGANLSVNNALIGFYTKC 250
+M RD+G ++D FT S ++ + +L + HA IR G ++ N AL+ Y+K
Sbjct: 315 EM-RDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKW 373
Query: 251 GRVKDVVALLERMPVMDIITLTEIIIAYMEFGYVDLAVEIFDKMPEKNSVSYNALLAGYC 310
GR++D A +FD+MP KN +S+NAL+AGY
Sbjct: 374 GRMED-------------------------------ARNVFDRMPRKNLISWNALIAGYG 402
Query: 311 KNGKAMEALGLFVKLLEEGLVLTEFTLTSVVNAC---GLIMEAK----LSEQIHGF---V 360
+G+ +A+ +F +++ EG+ T +V++AC GL + + H
Sbjct: 403 NHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRA 462
Query: 361 MKFGLGSNDCIEAALLDMLTRCGRMADAEKMFYRWP 396
M + A ++++L R G + +A M R P
Sbjct: 463 MHY---------ACMIELLGREGLLDEAYAMIRRAP 489
|
Length = 697 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 175 bits (445), Expect = 5e-46
Identities = 139/545 (25%), Positives = 246/545 (45%), Gaps = 84/545 (15%)
Query: 65 VSFTSLISGLAKLGREEEAIELF--FRMRSEGIVPNEHSFVAILTACIRLLELELGFQIH 122
VS S I L GR EA+ELF +P ++ A++ ACI L + ++
Sbjct: 88 VSLCSQIEKLVACGRHREALELFEILEAGCPFTLPAS-TYDALVEACIALKSIRCVKAVY 146
Query: 123 ALIVKMGCVDSVFVTNALMGLYGKFSFCLDYLLKLFDELPHKDTVSWNTVISSVVNEFEY 182
+ G ++ N ++ ++ K +D +LFDE+P ++ SW T+I +V+ Y
Sbjct: 147 WHVESSGFEPDQYMMNRVLLMHVKCGMLID-ARRLFDEMPERNLASWGTIIGGLVDAGNY 205
Query: 183 EKAFELFRDMKRDNGFTVDYFTISTLLTACTGCFVLMEGRAVHAHAIRIGLGANLSVNNA 242
+AF LFR+M D G + T +L A G G+ +H ++ G+ + V+ A
Sbjct: 206 REAFALFREMWED-GSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCA 264
Query: 243 LIGFYTKCGRVKDVVALLERMPVMDIITLTEIIIAYMEFGYVDLAVEIFDKMPEKNSVSY 302
LI Y+KCG ++D A +FD MPEK +V++
Sbjct: 265 LIDMYSKCGDIED-------------------------------ARCVFDGMPEKTTVAW 293
Query: 303 NALLAGYCKNGKAMEALGLFVKLLEEGLVLTEFTLTSVVNACGLIMEAKLSEQIHGFVMK 362
N++LAGY +G + EAL L+ ++ + G+ + +FT + ++ + + ++Q H +++
Sbjct: 294 NSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIR 353
Query: 363 FGLGSNDCIEAALLDMLTRCGRMADAEKMFYRWPTDRDDSIIWTSMICGYARSGKPEHAI 422
G + AL+D+ ++ GRM DA +F R P R + I W ++I GY G+ A+
Sbjct: 354 TGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP--RKNLISWNALIAGYGNHGRGTKAV 411
Query: 423 LLFHQSQSEATVVPDEIALTSVLGVCGTLGFHEMGKQIHSYALKTGFSSDLGVANSMVSM 482
+F + +E V P+ + +VL C G E G +I S + + +M
Sbjct: 412 EMFERMIAEG-VAPNHVTFLAVLSACRYSGLSEQGWEIFQ-----SMSENHRIKPR--AM 463
Query: 483 YFKCCNMSNAIKAFNKMPSHDIVSWNGLIAGHLLHRQG--DEALAVWSSMEKASIKPDAI 540
++ C +I LL R+G DEA A+ + +A KP
Sbjct: 464 HYAC-----------------------MI--ELLGREGLLDEAYAM---IRRAPFKPTVN 495
Query: 541 TFVLIISAYR-YTNLNLVDSCRKLFLSMKTIYNIEPTS-EHYASLVSVLGYWGFLEEAEE 598
+ +++A R + NL L L+ + +Y + P +Y L+++ G EA +
Sbjct: 496 MWAALLTACRIHKNLELGR------LAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAK 549
Query: 599 TINNM 603
+ +
Sbjct: 550 VVETL 554
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 129 bits (326), Expect = 8e-31
Identities = 82/322 (25%), Positives = 154/322 (47%), Gaps = 17/322 (5%)
Query: 303 NALLAGYCKNGKAMEALGLFVKLLEEGLVLTEFTLTSVVNACGLIMEAKLSEQIHGFVMK 362
N+ L C +G+ +AL L + E + + E ++ C + ++ +
Sbjct: 55 NSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALS 114
Query: 363 ----FGLGSNDCIEAALLDMLTRCGRMADAEKMFYRWPTDRDDSIIWTSMICGYARSGKP 418
G+ + A+L M R G + A +F + P D W ++ GYA++G
Sbjct: 115 SHPSLGVRLGN----AMLSMFVRFGELVHAWYVFGKMP--ERDLFSWNVLVGGYAKAGYF 168
Query: 419 EHAILLFHQSQSEATVVPDEIALTSVLGVCGTLGFHEMGKQIHSYALKTGFSSDLGVANS 478
+ A+ L+H+ A V PD VL CG + G+++H++ ++ GF D+ V N+
Sbjct: 169 DEALCLYHR-MLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNA 227
Query: 479 MVSMYFKCCNMSNAIKAFNKMPSHDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPD 538
+++MY KC ++ +A F++MP D +SWN +I+G+ + + E L ++ +M + S+ PD
Sbjct: 228 LITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPD 287
Query: 539 AITFVLIISAYRYTNLNLVDSCRKLF-LSMKTIYNIEPTSEHYASLVSVLGYWGFLEEAE 597
+T +ISA L R++ +KT + ++ + SL+ + G EAE
Sbjct: 288 LMTITSVISACEL--LGDERLGREMHGYVVKTGFAVDVSV--CNSLIQMYLSLGSWGEAE 343
Query: 598 ETINNMPFQPKVSVWRALLDSC 619
+ + M + VS W A++
Sbjct: 344 KVFSRMETKDAVS-WTAMISGY 364
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 111 bits (278), Expect = 4e-25
Identities = 96/383 (25%), Positives = 165/383 (43%), Gaps = 50/383 (13%)
Query: 1 FFNSLRLSVQCGEVSLAKAIHASLIKLLLEQDTRFGNPLISAYLKLGHVADAYKIFYGLS 60
F LR S G + +H ++K + DT LI Y K G + DA +F G+
Sbjct: 227 FVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP 286
Query: 61 SPNVVSFTSLISGLAKLGREEEAIELFFRMRSEGIVPNEHSFVAILTACIRLLELELGFQ 120
V++ S+++G A G EEA+ L++ MR G+ ++ +F ++ RL LE Q
Sbjct: 287 EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQ 346
Query: 121 IHALIVKMGCVDSVFVTNALMGLYGKFSFCLDYLLKLFDELPHKDTVSWNTVISSVVNEF 180
HA +++ G + AL+ LY K+ ++ +FD +P K+ +SWN +I+ N
Sbjct: 347 AHAGLIRTGFPLDIVANTALVDLYSKWGR-MEDARNVFDRMPRKNLISWNALIAGYGNHG 405
Query: 181 EYEKAFELFRDMKRDNGFTVDYFTISTLLTACT---------GCFVLM------EGRAVH 225
KA E+F M + G ++ T +L+AC F M + RA+H
Sbjct: 406 RGTKAVEMFERMIAE-GVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMH 464
Query: 226 AHAIRIGLGANLSVNNALIGFYTKCGRVKDVVALLERMPVMDIITLTEIIIAY------M 279
+ I + G + + A++ R P + + ++ +
Sbjct: 465 YACM--------------IELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNL 510
Query: 280 EFGYVDLAVEIFDKMPEKNSVSYNALLAGYCKNGKAMEALGLFVKLLEEGLVLTEFTLTS 339
E G + A +++ PEK + +Y LL Y +G+ EA + L +GL S
Sbjct: 511 ELGRL-AAEKLYGMGPEKLN-NYVVLLNLYNSSGRQAEAAKVVETLKRKGL--------S 560
Query: 340 VVNACGLIMEAKLSEQIHGFVMK 362
+ AC I ++ +Q H F
Sbjct: 561 MHPACTWI---EVKKQDHSFFSG 580
|
Length = 697 |
| >gnl|CDD|222749 pfam14432, DYW_deaminase, DYW family of nucleic acid deaminases | Back alignment and domain information |
|---|
Score = 90.5 bits (225), Expect = 1e-21
Identities = 43/118 (36%), Positives = 60/118 (50%), Gaps = 17/118 (14%)
Query: 690 HSFYVRDKSHPREKDIYSGLEILILECLKAGYVPDTSFVLHEVEEHQKKD------FLFY 743
D SHP K E L G VP+T + H+V+ + +D L
Sbjct: 9 KKTLSGDGSHPTSK------EELFQRIKVEGVVPETKEIGHDVDAEEFRDNGIKGKLLAS 62
Query: 744 HSAKLAATYGLLTTPAGQPVRIVKNILTCGDCHSFLKYVSVVTRREIFLRDASGFHHF 801
H+ K A YGLLTT + ++++K + CGDCH F +Y++ T REI +RD S FHHF
Sbjct: 63 HAEKQALAYGLLTT---RIIKVLKRM--CGDCHEFFRYIAKYTGREIIVRDPSRFHHF 115
|
A family of nucleic acid deaminases prototyped by the plant PPR DYW proteins that are implicated in chloroplast and mitochondrial RNA transcript maturation by numerous C to U editing events. The name derives from the DYW motif present at the C-terminus of the classical plant PPR DYW deaminases. Members of this family are present in bacteria, plants, Naegleria, and fungi. Plants and Naegleria show lineage-specific expansions of this family. The classical DYW family contain an additional C-terminal metal-binding cluster composed of 2 histidines and a CxC motif and are often fused to PPR repeats. Ascomycete versions, which are independent lateral transfers, contain a large insert within the domain and are often fused to ankyrin repeats. Bacterial versions are predicted to function as toxins in polymorphic toxin systems. Length = 116 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 57.0 bits (139), Expect = 1e-10
Identities = 18/48 (37%), Positives = 31/48 (64%)
Query: 62 PNVVSFTSLISGLAKLGREEEAIELFFRMRSEGIVPNEHSFVAILTAC 109
P+VV++ +LI G K G+ EEA++LF M+ GI PN +++ ++
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 50.9 bits (123), Expect = 2e-08
Identities = 16/47 (34%), Positives = 30/47 (63%)
Query: 503 DIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDAITFVLIISAY 549
D+V++N LI G+ + +EAL +++ M+K IKP+ T+ ++I
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 50.1 bits (121), Expect = 3e-08
Identities = 17/48 (35%), Positives = 29/48 (60%)
Query: 297 KNSVSYNALLAGYCKNGKAMEALGLFVKLLEEGLVLTEFTLTSVVNAC 344
+ V+YN L+ GYCK GK EAL LF ++ + G+ +T + +++
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 49.3 bits (119), Expect = 5e-08
Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 164 KDTVSWNTVISSVVNEFEYEKAFELFRDMKRDNGFTVDYFTISTLLTAC 212
D V++NT+I + + E+A +LF +MK+ G + +T S L+
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKK-RGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 54.1 bits (130), Expect = 2e-07
Identities = 79/364 (21%), Positives = 145/364 (39%), Gaps = 64/364 (17%)
Query: 67 FTSLISGLAKLGREEEAIELFFRMRSEGIVPNEHSFVAILTACIRLLELELGFQIHALIV 126
+T+LIS AK G+ + E+F M + G+ N H+F A++ C R ++ F
Sbjct: 475 YTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAF------- 527
Query: 127 KMGCVDSVFVTNALMGLYGKFSFCLDYLLKLFDELPHKDTVSWNTVISSVVNEFEYEKAF 186
G YG +++ + P D V +N +IS+ ++AF
Sbjct: 528 ---------------GAYG--------IMRSKNVKP--DRVVFNALISACGQSGAVDRAF 562
Query: 187 ELFRDMKRD-NGFTVDYFTISTLLTACTGCFVLMEGRAVHAHAIRIGLGANLSVNNALIG 245
++ +MK + + D+ T+ L+ AC + + V+ + V +
Sbjct: 563 DVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVN 622
Query: 246 FYTKCGRVKDVVALLERMP----VMDIITLTEIIIAYMEFGYVDLAVEIFDKMPEK---- 297
++ G +++ + M D + + ++ G +D A EI ++
Sbjct: 623 SCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKL 682
Query: 298 NSVSYNALLAGYCKNGKAME-ALGLFVKLLEEGLVLTEFTLTSVVNACGLIMEAK----- 351
+VSY++L+ G C N K + AL L+ + L T T+ +++ A + E
Sbjct: 683 GTVSYSSLM-GACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITA---LCEGNQLPKA 738
Query: 352 ---LSEQIHGFVMK-FGLGSNDCIEAALLDMLTRCGRMADAEKMFYRWPTDRDDSIIWTS 407
LSE MK GL N I ++L L R DA+ ++D I
Sbjct: 739 LEVLSE------MKRLGLCPNT-ITYSIL--LVASERKDDADVGLDLLSQAKEDGIKPNL 789
Query: 408 MICG 411
++C
Sbjct: 790 VMCR 793
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 53.7 bits (129), Expect = 3e-07
Identities = 74/364 (20%), Positives = 136/364 (37%), Gaps = 80/364 (21%)
Query: 29 LEQDTRFGNPLISAYLKLGHVADAYKIFYGLSS----PNVVSFTSLISGLAKLGREEEAI 84
L+ D + LIS K G V +++F+ + + NV +F +LI G A+ G+ +A
Sbjct: 468 LKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAF 527
Query: 85 ELFFRMRSEGIVPNEHSFVAILTACIRLLELELGFQI--------------H----ALI- 125
+ MRS+ + P+ F A+++AC + ++ F + H AL+
Sbjct: 528 GAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMK 587
Query: 126 --VKMGCVDSVFVTNALMGLYG----------KFSFC-----LDYLLKLFDELPHKDTVS 168
G VD ++ Y + C D+ L ++D++ K
Sbjct: 588 ACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKP 647
Query: 169 WNTVISSVVNEFEY----EKAFELFRDMKRDNGFTVDYFTISTLLTACTGCFVLMEGRAV 224
S++V+ + +KAFE+ +D R G + + S+L+ AC+ + +
Sbjct: 648 DEVFFSALVDVAGHAGDLDKAFEILQDA-RKQGIKLGTVSYSSLMGACSNAKNWKKALEL 706
Query: 225 HAHAIRIGLGANLSVNNALIGFYTKCGRVKDVVALLERMPVMDIITLTEIIIAYMEFGYV 284
+ I L +S NAL I A E +
Sbjct: 707 YEDIKSIKLRPTVSTMNAL-------------------------------ITALCEGNQL 735
Query: 285 DLAVEIFDKMPE----KNSVSYNALLAGYCKNGKAMEALGLFVKLLEEGLVLTEFTLTSV 340
A+E+ +M N+++Y+ LL + A L L + E+G+ +
Sbjct: 736 PKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCI 795
Query: 341 VNAC 344
C
Sbjct: 796 TGLC 799
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 47.0 bits (113), Expect = 4e-07
Identities = 15/49 (30%), Positives = 30/49 (61%), Gaps = 4/49 (8%)
Query: 267 DIITLTEIIIAYMEFGYVDLAVEIFDKMPEK----NSVSYNALLAGYCK 311
D++T +I Y + G V+ A+++F++M ++ N +Y+ L+ G CK
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 45.9 bits (110), Expect = 7e-07
Identities = 18/35 (51%), Positives = 24/35 (68%)
Query: 65 VSFTSLISGLAKLGREEEAIELFFRMRSEGIVPNE 99
V++ +LI GL K GR EEA+ELF M+ GI P+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 44.7 bits (107), Expect = 2e-06
Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 6/45 (13%)
Query: 37 NPLISAYLKLGHVADAYKIF-----YGLSSPNVVSFTSLISGLAK 76
N LI Y K G V +A K+F G+ PNV +++ LI GL K
Sbjct: 7 NTLIDGYCKKGKVEEALKLFNEMKKRGIK-PNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 44.4 bits (106), Expect = 2e-06
Identities = 16/31 (51%), Positives = 23/31 (74%)
Query: 65 VSFTSLISGLAKLGREEEAIELFFRMRSEGI 95
V++ SLISG K G+ EEA+ELF M+ +G+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 42.7 bits (102), Expect = 9e-06
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 61 SPNVVSFTSLISGLAKLGREEEAIELFFRMR 91
P+VV++ +LI GL + GR +EA+EL M
Sbjct: 4 KPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 41.7 bits (99), Expect = 2e-05
Identities = 17/31 (54%), Positives = 25/31 (80%)
Query: 300 VSYNALLAGYCKNGKAMEALGLFVKLLEEGL 330
V+YN+L++GYCK GK EAL LF ++ E+G+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 43.7 bits (103), Expect = 4e-04
Identities = 78/376 (20%), Positives = 161/376 (42%), Gaps = 33/376 (8%)
Query: 249 KCGRVKDVVALLERMPVMDIITLTEIIIA-YMEFGYVDLAVE---IFDK-MPEKNSVSYN 303
+ GR+KD + LLE M ++ + +I A + + AV+ F K + ++N
Sbjct: 382 RDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFN 441
Query: 304 ALLAGYCKNGKAME-ALGLFVKLLEEGLVLTEFTLTSVVNACGLIMEAKLSEQIHGFVMK 362
L++ C + + ++ AL + + E GL T++++ C AK S ++
Sbjct: 442 MLMS-VCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTC-----AK-SGKVDAMFEV 494
Query: 363 FGLGSNDCIEA------ALLDMLTRCGRMADAEKMF--YRWPTDRDDSIIWTSMICGYAR 414
F N +EA AL+D R G++A A + R + D +++ ++I +
Sbjct: 495 FHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQ 554
Query: 415 SGKPEHAILLFHQSQSEAT-VVPDEIALTSVLGVCGTLGFHEMGKQIHSYALKTGFSSDL 473
SG + A + + ++E + PD I + +++ C G + K+++ +
Sbjct: 555 SGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTP 614
Query: 474 GVANSMVSMYFKCCNMSNAIKAFNKMPSHDI----VSWNGLI--AGHLLHRQGDEALAVW 527
V V+ + + A+ ++ M + V ++ L+ AGH D+A +
Sbjct: 615 EVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGH--AGDLDKAFEIL 672
Query: 528 SSMEKASIKPDAITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVL 587
K IK +++ ++ A +N +L+ +K+I + PT +L++ L
Sbjct: 673 QDARKQGIKLGTVSYSSLMGA--CSNAKNWKKALELYEDIKSI-KLRPTVSTMNALITAL 729
Query: 588 GYWGFLEEAEETINNM 603
L +A E ++ M
Sbjct: 730 CEGNQLPKALEVLSEM 745
|
Length = 1060 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 38.1 bits (90), Expect = 4e-04
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 293 KMPEKNSVSYNALLAGYCKNGKAMEALGLF 322
K + + V+YN L+ G C+ G+ EA+ L
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELL 30
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 37.4 bits (88), Expect = 6e-04
Identities = 15/35 (42%), Positives = 21/35 (60%)
Query: 300 VSYNALLAGYCKNGKAMEALGLFVKLLEEGLVLTE 334
V+YN L+ G CK G+ EAL LF ++ E G+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 37.5 bits (88), Expect = 6e-04
Identities = 9/34 (26%), Positives = 20/34 (58%)
Query: 64 VVSFTSLISGLAKLGREEEAIELFFRMRSEGIVP 97
+ ++ +L+ LAK G + A+ + M++ G+ P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 36.3 bits (85), Expect = 0.001
Identities = 12/35 (34%), Positives = 21/35 (60%)
Query: 505 VSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDA 539
V++N LI G + +EAL ++ M++ I+PD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 40.6 bits (95), Expect = 0.004
Identities = 66/314 (21%), Positives = 123/314 (39%), Gaps = 63/314 (20%)
Query: 272 TEIIIAYMEFGYVDLAVEIFDKMP----EKNSVSYNALLAGYCKNGKAMEALGLFVKLLE 327
T +I + G VD E+F +M E N ++ AL+ G + G+ +A G + +
Sbjct: 476 TTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRS 535
Query: 328 EGLVLTEFTLTSVVNACG--------------LIMEAKLSEQIH---GFVMKFGLGSNDC 370
+ + ++++ACG + E + H G +MK C
Sbjct: 536 KNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMK------AC 589
Query: 371 IEAALLDMLTRCGRMADAEKMFYRWPTDRDDSIIWTSMICGYARSGKPEHAILLFHQSQS 430
A +D R + +M + + + ++T + ++ G + A L +
Sbjct: 590 ANAGQVD------RAKEVYQMIHEYNI-KGTPEVYTIAVNSCSQKGDWDFA-LSIYDDMK 641
Query: 431 EATVVPDEIALTSVLGVCGTLGFHEMGKQIHSYALKTG-------FSSDLGVANSMVSMY 483
+ V PDE+ ++++ V G G + +I A K G +SS +G
Sbjct: 642 KKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGA-------- 693
Query: 484 FKCCNMSN---------AIKAFNKMPSHDIVSWNGLIAGHLLHRQGDEALAVWSSMEKAS 534
C N N IK+ P+ + + N LI Q +AL V S M++
Sbjct: 694 --CSNAKNWKKALELYEDIKSIKLRPT--VSTMNALITALCEGNQLPKALEVLSEMKRLG 749
Query: 535 IKPDAITFVLIISA 548
+ P+ IT+ +++ A
Sbjct: 750 LCPNTITYSILLVA 763
|
Length = 1060 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 812 | |||
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| PF14432 | 116 | DYW_deaminase: DYW family of nucleic acid deaminas | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.95 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.94 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.92 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.91 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.87 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.83 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.8 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.79 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.79 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.79 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.75 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.75 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.74 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.74 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.72 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.72 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.7 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.66 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.63 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.62 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.61 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.61 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.58 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.56 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.54 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.48 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.44 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.42 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.4 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.39 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.36 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.36 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.31 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.3 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.3 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.29 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.27 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.27 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.25 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.25 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.24 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.24 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.23 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.22 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.19 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.19 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.19 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.18 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.15 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.11 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.07 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.06 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.06 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.04 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.04 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.04 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.01 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.01 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.01 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.99 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 98.97 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 98.97 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 98.95 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 98.94 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 98.92 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 98.9 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 98.9 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 98.85 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.85 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.84 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 98.83 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.83 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.82 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 98.78 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.77 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.77 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.76 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 98.76 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.6 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 98.57 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.56 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.55 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.55 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.53 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.53 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.49 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.47 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.43 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.43 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.42 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.41 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.4 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.38 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.36 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.33 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.33 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.32 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.31 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.3 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.27 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.26 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.25 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.24 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.23 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.18 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.17 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.15 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.14 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.14 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.13 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.07 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.07 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.06 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.05 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.04 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.04 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.03 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.03 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.02 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.01 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.01 | |
| PLN02789 | 320 | farnesyltranstransferase | 97.99 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 97.99 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 97.97 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.92 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 97.9 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 97.87 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.83 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 97.73 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.69 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 97.67 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.66 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.64 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 97.62 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.59 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.58 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.57 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.5 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.49 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.49 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.47 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 97.47 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.44 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.43 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.4 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.36 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.35 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 97.35 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.34 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.34 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.34 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.34 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 97.33 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.28 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 97.26 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.24 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.22 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 97.22 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.19 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.17 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.12 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.12 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.11 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.11 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.09 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.06 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.06 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.0 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 96.96 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 96.94 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 96.94 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 96.91 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 96.89 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 96.84 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 96.8 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 96.73 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 96.68 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 96.68 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 96.67 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 96.66 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 96.66 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 96.62 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 96.58 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 96.55 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 96.49 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.44 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 96.44 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.41 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.38 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.37 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.37 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 96.33 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 96.29 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.25 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.16 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.12 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.11 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 96.04 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 95.94 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 95.9 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 95.78 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 95.76 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 95.62 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 95.55 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 95.49 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 95.3 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 95.28 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 95.23 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 95.06 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 94.92 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 94.87 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 94.85 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 94.84 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 94.69 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 94.61 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 94.52 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 94.38 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 94.24 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 94.03 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 94.03 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 93.92 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 93.92 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 93.9 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 93.88 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 93.87 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 93.76 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 93.73 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 93.56 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 93.46 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 93.42 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 93.4 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 93.32 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 93.12 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 93.11 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 92.81 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 92.81 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 92.72 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 92.57 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 92.52 | |
| PRK09687 | 280 | putative lyase; Provisional | 92.32 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 92.2 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 92.0 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 91.53 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 91.39 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 91.37 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 91.37 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 91.33 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 91.31 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 91.26 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 91.07 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 90.83 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 90.7 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 90.7 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 90.03 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 90.02 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 89.97 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 89.66 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 89.63 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 89.59 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 89.45 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 89.43 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 89.38 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 89.19 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 89.01 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 88.68 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 88.24 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 87.94 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 87.89 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 87.87 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 87.83 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 87.73 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 87.68 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 87.62 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 87.33 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 87.17 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 86.13 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 85.67 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 85.4 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 85.15 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 85.06 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 85.03 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 84.23 | |
| PF13929 | 292 | mRNA_stabil: mRNA stabilisation | 83.84 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 83.75 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 83.68 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 83.28 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 83.07 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 82.83 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 82.58 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 82.47 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 81.66 | |
| TIGR02508 | 115 | type_III_yscG type III secretion protein, YscG fam | 81.3 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 81.05 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 81.03 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 80.92 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 80.86 |
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-153 Score=1348.90 Aligned_cols=768 Identities=32% Similarity=0.581 Sum_probs=755.3
Q ss_pred hhhHHhHhccCCchHHHHHHHHHHHhccCCCccchHHHHHHHHccCChhhHHHHHhcCCCCChhhHHHHHHHHHhcCChh
Q 040319 2 FNSLRLSVQCGEVSLAKAIHASLIKLLLEQDTRFGNPLISAYLKLGHVADAYKIFYGLSSPNVVSFTSLISGLAKLGREE 81 (812)
Q Consensus 2 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~ 81 (812)
..++++|.+.+.+..|.++|+.+++.|..++..++|.|+.+|+++|+++.|.++|++|++||+++||+||++|++.|+++
T Consensus 90 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~ 169 (857)
T PLN03077 90 VALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFD 169 (857)
T ss_pred HHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHH
Confidence 46788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHhhhcCCCHHHHHHHHhcC
Q 040319 82 EAIELFFRMRSEGIVPNEHSFVAILTACIRLLELELGFQIHALIVKMGCVDSVFVTNALMGLYGKFSFCLDYLLKLFDEL 161 (812)
Q Consensus 82 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~~a~~~f~~~ 161 (812)
+|+++|++|...|+.||..||+++|++|++.+++..+.++|..+.+.|+.||+.++|+||.+|+++| +++.|.++|++|
T Consensus 170 ~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g-~~~~A~~lf~~m 248 (857)
T PLN03077 170 EALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCG-DVVSARLVFDRM 248 (857)
T ss_pred HHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCC-CHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred CCCCcchHHHHHHHHHcCCChhHHHHHHHHhHhcCCCCCCcchHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHH
Q 040319 162 PHKDTVSWNTVISSVVNEFEYEKAFELFRDMKRDNGFTVDYFTISTLLTACTGCFVLMEGRAVHAHAIRIGLGANLSVNN 241 (812)
Q Consensus 162 ~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 241 (812)
++||.++||+||.+|++.|++++|+++|++| ...|+.||..||++++.+|++.|+++.|.++|..+.+.|+.||..+||
T Consensus 249 ~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M-~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n 327 (857)
T PLN03077 249 PRRDCISWNAMISGYFENGECLEGLELFFTM-RELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCN 327 (857)
T ss_pred CCCCcchhHHHHHHHHhCCCHHHHHHHHHHH-HHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHH
Confidence 9999999999999999999999999999999 899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCChHHHHHHHhcCCCCcchhHHHHHHHHHhhCChhHHHHHhccCCCCCcccHHHHHHHHHhCCChHHHHHH
Q 040319 242 ALIGFYTKCGRVKDVVALLERMPVMDIITLTEIIIAYMEFGYVDLAVEIFDKMPEKNSVSYNALLAGYCKNGKAMEALGL 321 (812)
Q Consensus 242 ~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l 321 (812)
+||.+|+++|++++|.+ +|++|.+||+++||+||.+|++.|++++|+++
T Consensus 328 ~Li~~y~k~g~~~~A~~-------------------------------vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~l 376 (857)
T PLN03077 328 SLIQMYLSLGSWGEAEK-------------------------------VFSRMETKDAVSWTAMISGYEKNGLPDKALET 376 (857)
T ss_pred HHHHHHHhcCCHHHHHH-------------------------------HHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHH
Confidence 99999999999999999 88889999999999999999999999999999
Q ss_pred HHHHHHcCCCCCHhHHHHHHHHhccchhhhhHHHHHhhHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCCc
Q 040319 322 FVKLLEEGLVLTEFTLTSVVNACGLIMEAKLSEQIHGFVMKFGLGSNDCIEAALLDMLTRCGRMADAEKMFYRWPTDRDD 401 (812)
Q Consensus 322 ~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~ 401 (812)
|++|.+.|+.||..||++++.+|++.|+++.|.++|+.+.+.|+.|+..++|+||++|+++|++++|.++|++|. .++
T Consensus 377 f~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~-~~d- 454 (857)
T PLN03077 377 YALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIP-EKD- 454 (857)
T ss_pred HHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCC-
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999998 666
Q ss_pred eeeeHHHHHHHHHcCChhhHHHHHHHhcccCCCCCChhhHHHHHHHhcCccchHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 040319 402 SIIWTSMICGYARSGKPEHAILLFHQSQSEATVVPDEIALTSVLGVCGTLGFHEMGKQIHSYALKTGFSSDLGVANSMVS 481 (812)
Q Consensus 402 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~ 481 (812)
+++||+||.+|+++|+.++|+.+|++|.. +++||.+||+++|.+|++.|.++.++++|..+.+.|+.+|..++|+|++
T Consensus 455 ~vs~~~mi~~~~~~g~~~eA~~lf~~m~~--~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~ 532 (857)
T PLN03077 455 VISWTSIIAGLRLNNRCFEALIFFRQMLL--TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLD 532 (857)
T ss_pred eeeHHHHHHHHHHCCCHHHHHHHHHHHHh--CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHH
Confidence 99999999999999999999999999985 5999999999999999999999999999999999999999999999999
Q ss_pred HhhhcCCHHHHHHHHccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCchHHHHH
Q 040319 482 MYFKCCNMSNAIKAFNKMPSHDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDAITFVLIISAYRYTNLNLVDSCR 561 (812)
Q Consensus 482 ~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~g~~~~a~ 561 (812)
+|+|+|++++|.++|+.+ .||+++||+||.+|+++|+.++|+++|++|.+.|+.||.+||+.+|.+|++ .|++++|.
T Consensus 533 ~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~--~g~v~ea~ 609 (857)
T PLN03077 533 LYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSR--SGMVTQGL 609 (857)
T ss_pred HHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhh--cChHHHHH
Confidence 999999999999999999 999999999999999999999999999999999999999999999999999 99999999
Q ss_pred HHHHHhhhhcCccCCcchHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCC
Q 040319 562 KLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLEEAEETINNMPFQPKVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQ 641 (812)
Q Consensus 562 ~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~ 641 (812)
++|++|.+++|+.|+..||++|+++|+|+|++++|++++++|+++||..+|++|+++|+.+|+++.|+.+++++++++|+
T Consensus 610 ~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~ 689 (857)
T PLN03077 610 EYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPN 689 (857)
T ss_pred HHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Confidence 99999997799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchHHHHHhhhhhCCCcchHHHHHHHHHhCCCCCCCceeEEEECCEEEEEeeCCCCCcchHHHHHHHHHHHHHHHHcCc
Q 040319 642 DPATYILVSNLYSSSGRWHNSELVREDMREKGFRKHPSRSWIIHQNKVHSFYVRDKSHPREKDIYSGLEILILECLKAGY 721 (812)
Q Consensus 642 ~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~~~~~g~ 721 (812)
+++.|+.|+|+|++.|+|++|.++++.|+++|++|+||+||||+++++|.|.+||.+||+.++||..|++|..+|++.||
T Consensus 690 ~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~ 769 (857)
T PLN03077 690 SVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGL 769 (857)
T ss_pred CcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHHHHHHHHHHHHHHHhCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCccccccchhhhhhhhhhhhHHHHHHHhhcCCCCCCcEEEEcccccccchhhHHHHhhhhcceEEEEecCCccccc
Q 040319 722 VPDTSFVLHEVEEHQKKDFLFYHSAKLAATYGLLTTPAGQPVRIVKNILTCGDCHSFLKYVSVVTRREIFLRDASGFHHF 801 (812)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~~~~~hse~la~~~~~~~~~~~~~~~~~~n~~~c~~ch~~~k~~s~~~~r~i~~rd~~~~h~f 801 (812)
+||+++++ +++||+|++.|++||||||||||||+||+|+||||+||||||+|||+++||||++++|||||||++|||||
T Consensus 770 ~~~~~~~~-~~~~~~k~~~~~~hse~la~a~~l~~~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f 848 (857)
T PLN03077 770 AGSESSSM-DEIEVSKDDIFCGHSERLAIAFGLINTVPGMPIWVTKNLYMCENCHNTVKFISKIVRREISVRDTEQFHHF 848 (857)
T ss_pred CCCcchhc-cccHHHHHHHHHhccHHHHHHHhhhcCCCCCeEEEeCCCEeCccHHHHHHHHHHHhCeEEEEecCCcceeC
Confidence 99999988 55889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCccCCCC
Q 040319 802 LNGQCSCKD 810 (812)
Q Consensus 802 ~~g~csc~~ 810 (812)
+||+|||||
T Consensus 849 ~~g~csc~d 857 (857)
T PLN03077 849 KDGECSCGD 857 (857)
T ss_pred CCCcccCCC
Confidence 999999998
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-129 Score=1124.83 Aligned_cols=614 Identities=34% Similarity=0.607 Sum_probs=603.5
Q ss_pred CCCcchHHHHHHHHHcCCChhHHHHHHHHhHhcCCCCCCcchHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHH
Q 040319 163 HKDTVSWNTVISSVVNEFEYEKAFELFRDMKRDNGFTVDYFTISTLLTACTGCFVLMEGRAVHAHAIRIGLGANLSVNNA 242 (812)
Q Consensus 163 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 242 (812)
.++.++|+.+|.+|.+.|++++|+++|+.|....++.||..||+.++.+|++.++++.+.++|..|.+.|+.||..++|.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 45788999999999999999999999999943345889999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCChHHHHHHHhcCCCCcchhHHHHHHHHHhhCChhHHHHHhccCCCCCcccHHHHHHHHHhCCChHHHHHHH
Q 040319 243 LIGFYTKCGRVKDVVALLERMPVMDIITLTEIIIAYMEFGYVDLAVEIFDKMPEKNSVSYNALLAGYCKNGKAMEALGLF 322 (812)
Q Consensus 243 li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~ 322 (812)
|+++|+++|++++|.+ +|++|++||.++||++|.+|++.|++++|+++|
T Consensus 164 Li~~y~k~g~~~~A~~-------------------------------lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf 212 (697)
T PLN03081 164 VLLMHVKCGMLIDARR-------------------------------LFDEMPERNLASWGTIIGGLVDAGNYREAFALF 212 (697)
T ss_pred HHHHHhcCCCHHHHHH-------------------------------HHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHH
Confidence 9999999999999999 899999999999999999999999999999999
Q ss_pred HHHHHcCCCCCHhHHHHHHHHhccchhhhhHHHHHhhHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCCce
Q 040319 323 VKLLEEGLVLTEFTLTSVVNACGLIMEAKLSEQIHGFVMKFGLGSNDCIEAALLDMLTRCGRMADAEKMFYRWPTDRDDS 402 (812)
Q Consensus 323 ~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~ 402 (812)
++|.+.|+.||..||+.++.+|+..+..+.+.++|..+.+.|+.+|..++|+||++|+++|++++|.++|++|+ .++ +
T Consensus 213 ~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~-~~~-~ 290 (697)
T PLN03081 213 REMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP-EKT-T 290 (697)
T ss_pred HHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC-CCC-h
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998 666 9
Q ss_pred eeeHHHHHHHHHcCChhhHHHHHHHhcccCCCCCChhhHHHHHHHhcCccchHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 040319 403 IIWTSMICGYARSGKPEHAILLFHQSQSEATVVPDEIALTSVLGVCGTLGFHEMGKQIHSYALKTGFSSDLGVANSMVSM 482 (812)
Q Consensus 403 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~ 482 (812)
++||+||.+|++.|++++|+++|++|.. .|+.||..||++++.+|++.|.++.|.++|..|.+.|+.||..++++|+++
T Consensus 291 vt~n~li~~y~~~g~~~eA~~lf~~M~~-~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~ 369 (697)
T PLN03081 291 VAWNSMLAGYALHGYSEEALCLYYEMRD-SGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDL 369 (697)
T ss_pred hHHHHHHHHHHhCCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHH
Confidence 9999999999999999999999999998 999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCHHHHHHHHccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCchHHHHHH
Q 040319 483 YFKCCNMSNAIKAFNKMPSHDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDAITFVLIISAYRYTNLNLVDSCRK 562 (812)
Q Consensus 483 y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~g~~~~a~~ 562 (812)
|+|+|++++|.++|++|.+||+++||+||.+|+++|+.++|+++|++|.+.|+.||.+||+.++.+|++ .|++++|.+
T Consensus 370 y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~--~g~~~~a~~ 447 (697)
T PLN03081 370 YSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRY--SGLSEQGWE 447 (697)
T ss_pred HHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhc--CCcHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999 999999999
Q ss_pred HHHHhhhhcCccCCcchHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCC
Q 040319 563 LFLSMKTIYNIEPTSEHYASLVSVLGYWGFLEEAEETINNMPFQPKVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQD 642 (812)
Q Consensus 563 ~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~ 642 (812)
+|+.|.+++|+.|+..||++||++|+++|++++|.+++++|+++|+..+|++|+.+|+.+|+++.|+.+++++++++|++
T Consensus 448 ~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~ 527 (697)
T PLN03081 448 IFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEK 527 (697)
T ss_pred HHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCC
Confidence 99999988999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchHHHHHhhhhhCCCcchHHHHHHHHHhCCCCCCCceeEEEECCEEEEEeeCCCCCcchHHHHHHHHHHHHHHHHcCcc
Q 040319 643 PATYILVSNLYSSSGRWHNSELVREDMREKGFRKHPSRSWIIHQNKVHSFYVRDKSHPREKDIYSGLEILILECLKAGYV 722 (812)
Q Consensus 643 ~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~~~~~g~~ 722 (812)
...|..|+++|++.|+|++|.+++++|+++|++|.||+|||++++++|.|++||.+||+..+||.+|.+|..+|++.||+
T Consensus 528 ~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~ 607 (697)
T PLN03081 528 LNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYV 607 (697)
T ss_pred CcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCccccccchhhhhhhhhhhhHHHHHHHhhcCCCCCCcEEEEcccccccchhhHHHHhhhhcceEEEEecCCcccccc
Q 040319 723 PDTSFVLHEVEEHQKKDFLFYHSAKLAATYGLLTTPAGQPVRIVKNILTCGDCHSFLKYVSVVTRREIFLRDASGFHHFL 802 (812)
Q Consensus 723 ~~~~~~~~~~~~~~~~~~~~~hse~la~~~~~~~~~~~~~~~~~~n~~~c~~ch~~~k~~s~~~~r~i~~rd~~~~h~f~ 802 (812)
||+++++||+++++|+..+++||||||||||||++|+|+||||+||||||+|||+++||||+++||||||||++|||||+
T Consensus 608 ~~~~~~~~~~~~~~~~~~~~~hsekla~a~~l~~~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~ 687 (697)
T PLN03081 608 AEENELLPDVDEDEEKVSGRYHSEKLAIAFGLINTSEWTPLQITQSHRICKDCHKVIKFIALVTKREIVVRDASRFHHFK 687 (697)
T ss_pred CCcchhhccccHHHHHHHHHhccHHHHHHhhCccCCCCCeEEEecCCEECCCchhhHHHHhhhcceEEEEecCCccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccCCCCCC
Q 040319 803 NGQCSCKDYW 812 (812)
Q Consensus 803 ~g~csc~~~w 812 (812)
||+|||||||
T Consensus 688 ~g~csc~d~w 697 (697)
T PLN03081 688 LGKCSCGDYW 697 (697)
T ss_pred CCcccccccC
Confidence 9999999999
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-82 Score=748.04 Aligned_cols=686 Identities=25% Similarity=0.415 Sum_probs=605.8
Q ss_pred CCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchHHHHH
Q 040319 60 SSPNVVSFTSLISGLAKLGREEEAIELFFRMRSEGIVPNEHSFVAILTACIRLLELELGFQIHALIVKMGCVDSVFVTNA 139 (812)
Q Consensus 60 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 139 (812)
..++..++|.++.+|++.|++++|+.+|+.|.+.|+.|+..+|..++++|.+.+.++.|.++|..+.+.|..+++.++|+
T Consensus 47 ~~~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~ 126 (857)
T PLN03077 47 SSSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNA 126 (857)
T ss_pred cccchhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHH
Confidence 35677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhcCCCHHHHHHHHhcCCCCCcchHHHHHHHHHcCCChhHHHHHHHHhHhcCCCCCCcchHHHHHHHHhcCCChH
Q 040319 140 LMGLYGKFSFCLDYLLKLFDELPHKDTVSWNTVISSVVNEFEYEKAFELFRDMKRDNGFTVDYFTISTLLTACTGCFVLM 219 (812)
Q Consensus 140 li~~y~~~g~~~~~a~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~~~~~ 219 (812)
||.+|+++| +++.|.++|++|++||+++||+||.+|++.|++++|+++|++| ...|+.||.+||++++++|+..+++.
T Consensus 127 li~~~~~~g-~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M-~~~g~~Pd~~t~~~ll~~~~~~~~~~ 204 (857)
T PLN03077 127 MLSMFVRFG-ELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRM-LWAGVRPDVYTFPCVLRTCGGIPDLA 204 (857)
T ss_pred HHHHHHhCC-ChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHH-HHcCCCCChhHHHHHHHHhCCccchh
Confidence 999999999 9999999999999999999999999999999999999999999 88899999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCcchhHHHHHHHHHhhCChhHHHHHhccCCCCCc
Q 040319 220 EGRAVHAHAIRIGLGANLSVNNALIGFYTKCGRVKDVVALLERMPVMDIITLTEIIIAYMEFGYVDLAVEIFDKMPEKNS 299 (812)
Q Consensus 220 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~d~ 299 (812)
.+.++|..+.+.|+.||..++|+||++|+++|++++|.+ +|++|+++|+
T Consensus 205 ~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~-------------------------------lf~~m~~~d~ 253 (857)
T PLN03077 205 RGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARL-------------------------------VFDRMPRRDC 253 (857)
T ss_pred hHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHH-------------------------------HHhcCCCCCc
Confidence 999999999999999999999999999999999999999 8999999999
Q ss_pred ccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHhccchhhhhHHHHHhhHHHhcCCCchhHHHHHHHHH
Q 040319 300 VSYNALLAGYCKNGKAMEALGLFVKLLEEGLVLTEFTLTSVVNACGLIMEAKLSEQIHGFVMKFGLGSNDCIEAALLDML 379 (812)
Q Consensus 300 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y 379 (812)
++||+||.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.++++.+.++|..+.+.|+.||..+||+|+++|
T Consensus 254 ~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y 333 (857)
T PLN03077 254 ISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMY 333 (857)
T ss_pred chhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCHHHHHHHHhcCCCCCCceeeeHHHHHHHHHcCChhhHHHHHHHhcccCCCCCChhhHHHHHHHhcCccchHHHHH
Q 040319 380 TRCGRMADAEKMFYRWPTDRDDSIIWTSMICGYARSGKPEHAILLFHQSQSEATVVPDEIALTSVLGVCGTLGFHEMGKQ 459 (812)
Q Consensus 380 ~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~ 459 (812)
+++|++++|.++|++|. .++ +++||+||.+|++.|++++|+++|++|.. .|+.||..||++++.+|++.|+++.|.+
T Consensus 334 ~k~g~~~~A~~vf~~m~-~~d-~~s~n~li~~~~~~g~~~~A~~lf~~M~~-~g~~Pd~~t~~~ll~a~~~~g~~~~a~~ 410 (857)
T PLN03077 334 LSLGSWGEAEKVFSRME-TKD-AVSWTAMISGYEKNGLPDKALETYALMEQ-DNVSPDEITIASVLSACACLGDLDVGVK 410 (857)
T ss_pred HhcCCHHHHHHHHhhCC-CCC-eeeHHHHHHHHHhCCCHHHHHHHHHHHHH-hCCCCCceeHHHHHHHHhccchHHHHHH
Confidence 99999999999999998 665 99999999999999999999999999998 9999999999999999999999999999
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHhhhcCCHHHHHHHHccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH
Q 040319 460 IHSYALKTGFSSDLGVANSMVSMYFKCCNMSNAIKAFNKMPSHDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDA 539 (812)
Q Consensus 460 ~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~ 539 (812)
+|+.+.+.|+.|+..++|+|+++|+++|++++|.++|++|.++|+++||+||.+|+++|+.++|+++|++|.. ++.||.
T Consensus 411 l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~ 489 (857)
T PLN03077 411 LHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNS 489 (857)
T ss_pred HHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999986 699999
Q ss_pred HHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCCcchHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 040319 540 ITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLEEAEETINNMPFQPKVSVWRALLDSC 619 (812)
Q Consensus 540 ~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~ 619 (812)
+||+.+|.+|++ .|.+++|.+++..+.+ .|+.|+..++++|+++|+++|++++|+++|++| +||..+|++++.+|
T Consensus 490 ~t~~~lL~a~~~--~g~l~~~~~i~~~~~~-~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~--~~d~~s~n~lI~~~ 564 (857)
T PLN03077 490 VTLIAALSACAR--IGALMCGKEIHAHVLR-TGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH--EKDVVSWNILLTGY 564 (857)
T ss_pred hHHHHHHHHHhh--hchHHHhHHHHHHHHH-hCCCccceechHHHHHHHHcCCHHHHHHHHHhc--CCChhhHHHHHHHH
Confidence 999999999999 9999999999999997 899999999999999999999999999999999 89999999999999
Q ss_pred HhcCCHHHHHHHHHHHHcc--CCCCCchHHHHHhhhhhCCCcchHHHHHHHHH-hCCCCCCCceeEEEECCEEEEEeeCC
Q 040319 620 RIRLNTTIGKRVAKHILAM--EPQDPATYILVSNLYSSSGRWHNSELVREDMR-EKGFRKHPSRSWIIHQNKVHSFYVRD 696 (812)
Q Consensus 620 ~~~~~~~~a~~~~~~~~~~--~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~-~~g~~~~~~~s~~~~~~~~~~f~~~~ 696 (812)
.++|+.++|..+++++.+. .| |..+|..+...|.+.|++++|.++++.|+ +.|+.+.... + +- .+..-
T Consensus 565 ~~~G~~~~A~~lf~~M~~~g~~P-d~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~-y----~~---lv~~l 635 (857)
T PLN03077 565 VAHGKGSMAVELFNRMVESGVNP-DEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKH-Y----AC---VVDLL 635 (857)
T ss_pred HHcCCHHHHHHHHHHHHHcCCCC-CcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHH-H----HH---HHHHH
Confidence 9999999999999999874 56 47789999999999999999999999998 5677654210 0 00 00000
Q ss_pred CCCcchHHHHHHHHHHHHHHHHcCcccCCCccccccchhhhhhhhhhh-----hHHHH-HHHhhcCCCCCCcEEEEcccc
Q 040319 697 KSHPREKDIYSGLEILILECLKAGYVPDTSFVLHEVEEHQKKDFLFYH-----SAKLA-ATYGLLTTPAGQPVRIVKNIL 770 (812)
Q Consensus 697 ~~~~~~~~i~~~l~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~h-----se~la-~~~~~~~~~~~~~~~~~~n~~ 770 (812)
..-... .+..++.++| ...||....-.-+. ....| -|+.| ..+.+....++..+.+.+=.-
T Consensus 636 ~r~G~~----~eA~~~~~~m---~~~pd~~~~~aLl~------ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya 702 (857)
T PLN03077 636 GRAGKL----TEAYNFINKM---PITPDPAVWGALLN------ACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYA 702 (857)
T ss_pred HhCCCH----HHHHHHHHHC---CCCCCHHHHHHHHH------HHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHH
Confidence 001111 2223344444 46676532100000 00011 12222 224443333333333223234
Q ss_pred cccchhhHHHHhhhhcceEE-------EEecCCccccccCCccCCC
Q 040319 771 TCGDCHSFLKYVSVVTRREI-------FLRDASGFHHFLNGQCSCK 809 (812)
Q Consensus 771 ~c~~ch~~~k~~s~~~~r~i-------~~rd~~~~h~f~~g~csc~ 809 (812)
-.++...+.|......++.| .|.-.+..|-|..|.-|..
T Consensus 703 ~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~ 748 (857)
T PLN03077 703 DAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHP 748 (857)
T ss_pred HCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCc
Confidence 56888899999888877765 2333578999988876543
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-68 Score=617.89 Aligned_cols=474 Identities=25% Similarity=0.436 Sum_probs=456.7
Q ss_pred CCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchHHHHH
Q 040319 61 SPNVVSFTSLISGLAKLGREEEAIELFFRMRSEG-IVPNEHSFVAILTACIRLLELELGFQIHALIVKMGCVDSVFVTNA 139 (812)
Q Consensus 61 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 139 (812)
.++.++|+.+|.+|.+.|++++|+++|+.|...+ ..||..+|+.++.+|++.++++.+.++|..|.+.|+.||+.++|.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 3567799999999999999999999999999864 789999999999999999999999999999999999999999999
Q ss_pred HHHHhhhcCCCHHHHHHHHhcCCCCCcchHHHHHHHHHcCCChhHHHHHHHHhHhcCCCCCCcchHHHHHHHHhcCCChH
Q 040319 140 LMGLYGKFSFCLDYLLKLFDELPHKDTVSWNTVISSVVNEFEYEKAFELFRDMKRDNGFTVDYFTISTLLTACTGCFVLM 219 (812)
Q Consensus 140 li~~y~~~g~~~~~a~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~~~~~ 219 (812)
|+.+|+++| +++.|.++|++|++||.++||+||.+|++.|++++|+++|++| ...|+.||..||+.++.+|+..|..+
T Consensus 164 Li~~y~k~g-~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M-~~~g~~p~~~t~~~ll~a~~~~~~~~ 241 (697)
T PLN03081 164 VLLMHVKCG-MLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREM-WEDGSDAEPRTFVVMLRASAGLGSAR 241 (697)
T ss_pred HHHHHhcCC-CHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHH-HHhCCCCChhhHHHHHHHHhcCCcHH
Confidence 999999999 9999999999999999999999999999999999999999999 88999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCcchhHHHHHHHHHhhCChhHHHHHhccCCCCCc
Q 040319 220 EGRAVHAHAIRIGLGANLSVNNALIGFYTKCGRVKDVVALLERMPVMDIITLTEIIIAYMEFGYVDLAVEIFDKMPEKNS 299 (812)
Q Consensus 220 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~d~ 299 (812)
.+.++|..+.+.|+.+|..++|+||++|+++|++++|.+ +|++|+++|+
T Consensus 242 ~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~-------------------------------vf~~m~~~~~ 290 (697)
T PLN03081 242 AGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARC-------------------------------VFDGMPEKTT 290 (697)
T ss_pred HHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHH-------------------------------HHHhCCCCCh
Confidence 999999999999999999999999999999999999999 8888999999
Q ss_pred ccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHhccchhhhhHHHHHhhHHHhcCCCchhHHHHHHHHH
Q 040319 300 VSYNALLAGYCKNGKAMEALGLFVKLLEEGLVLTEFTLTSVVNACGLIMEAKLSEQIHGFVMKFGLGSNDCIEAALLDML 379 (812)
Q Consensus 300 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y 379 (812)
++||+||.+|++.|++++|+++|++|.+.|+.||..||++++.+|++.|+++.|.++|+.|.+.|+.||..++++||++|
T Consensus 291 vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y 370 (697)
T PLN03081 291 VAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLY 370 (697)
T ss_pred hHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCHHHHHHHHhcCCCCCCceeeeHHHHHHHHHcCChhhHHHHHHHhcccCCCCCChhhHHHHHHHhcCccchHHHHH
Q 040319 380 TRCGRMADAEKMFYRWPTDRDDSIIWTSMICGYARSGKPEHAILLFHQSQSEATVVPDEIALTSVLGVCGTLGFHEMGKQ 459 (812)
Q Consensus 380 ~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~ 459 (812)
+++|++++|.++|++|. .++ +++||+||.+|++.|+.++|+++|++|.. .|+.||.+||++++.+|++.|.+++|.+
T Consensus 371 ~k~G~~~~A~~vf~~m~-~~d-~~t~n~lI~~y~~~G~~~~A~~lf~~M~~-~g~~Pd~~T~~~ll~a~~~~g~~~~a~~ 447 (697)
T PLN03081 371 SKWGRMEDARNVFDRMP-RKN-LISWNALIAGYGNHGRGTKAVEMFERMIA-EGVAPNHVTFLAVLSACRYSGLSEQGWE 447 (697)
T ss_pred HHCCCHHHHHHHHHhCC-CCC-eeeHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCCCHHHHHHHHHHHhcCCcHHHHHH
Confidence 99999999999999998 665 99999999999999999999999999998 9999999999999999999999999999
Q ss_pred HHHHHHH-hCCCCchhHHHHHHHHhhhcCCHHHHHHHHccCCC-CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 040319 460 IHSYALK-TGFSSDLGVANSMVSMYFKCCNMSNAIKAFNKMPS-HDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKP 537 (812)
Q Consensus 460 ~~~~~~~-~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 537 (812)
+++.|.+ .|+.|+..+|++++++|++.|++++|.++|++|.. ||..+|++|+.+|..+|+.+.|..+++++.+ +.|
T Consensus 448 ~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p 525 (697)
T PLN03081 448 IFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGP 525 (697)
T ss_pred HHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCC
Confidence 9999986 69999999999999999999999999999999975 9999999999999999999999999999976 778
Q ss_pred CH-HHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccC
Q 040319 538 DA-ITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEP 575 (812)
Q Consensus 538 d~-~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p 575 (812)
+. .+|+.++..|+. .|++++|.++++.|++ .|+.+
T Consensus 526 ~~~~~y~~L~~~y~~--~G~~~~A~~v~~~m~~-~g~~k 561 (697)
T PLN03081 526 EKLNNYVVLLNLYNS--SGRQAEAAKVVETLKR-KGLSM 561 (697)
T ss_pred CCCcchHHHHHHHHh--CCCHHHHHHHHHHHHH-cCCcc
Confidence 64 789999999999 9999999999999987 66653
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-68 Score=615.77 Aligned_cols=531 Identities=14% Similarity=0.203 Sum_probs=474.2
Q ss_pred cCCCccchHHHHHHHHccCChhhHHHHHhcCCCCCh-----hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHH
Q 040319 29 LEQDTRFGNPLISAYLKLGHVADAYKIFYGLSSPNV-----VSFTSLISGLAKLGREEEAIELFFRMRSEGIVPNEHSFV 103 (812)
Q Consensus 29 ~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~-----~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~ 103 (812)
..++...|..++..+++.|++++|.++|+.|+.++. ..++.++.+|.+.|..++|+.+|..|.. ||..+|+
T Consensus 366 ~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn 441 (1060)
T PLN03218 366 GKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFN 441 (1060)
T ss_pred CCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHH
Confidence 456778899999999999999999999999986554 4556777889999999999999999974 9999999
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHhhhcCCCHHHHHHHHhcCC----CCCcchHHHHHHHHHcC
Q 040319 104 AILTACIRLLELELGFQIHALIVKMGCVDSVFVTNALMGLYGKFSFCLDYLLKLFDELP----HKDTVSWNTVISSVVNE 179 (812)
Q Consensus 104 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~~a~~~f~~~~----~~~~~~~~~li~~~~~~ 179 (812)
.+|.+|++.|+++.|.++|+.|.+.|+.||..+|++||.+|+++| +++.|.++|++|. .||.++||+||.+|++.
T Consensus 442 ~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G-~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~ 520 (1060)
T PLN03218 442 MLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSG-KVDAMFEVFHEMVNAGVEANVHTFGALIDGCARA 520 (1060)
T ss_pred HHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCc-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC
Confidence 999999999999999999999999999999999999999999999 9999999999998 58999999999999999
Q ss_pred CChhHHHHHHHHhHhcCCCCCCcchHHHHHHHHhcCCChHHHHHHHHHHHH--hCCCCchhHHHHHHHHHHhcCChHHHH
Q 040319 180 FEYEKAFELFRDMKRDNGFTVDYFTISTLLTACTGCFVLMEGRAVHAHAIR--IGLGANLSVNNALIGFYTKCGRVKDVV 257 (812)
Q Consensus 180 g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~--~g~~~~~~~~~~li~~~~~~g~~~~A~ 257 (812)
|++++|+++|+.| ...|+.||..||+.+|.+|++.|+++.|.++|++|.+ .|+.||..+|++||.+|+++|++++|.
T Consensus 521 G~~eeAl~lf~~M-~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~ 599 (1060)
T PLN03218 521 GQVAKAFGAYGIM-RSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAK 599 (1060)
T ss_pred cCHHHHHHHHHHH-HHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHH
Confidence 9999999999999 8899999999999999999999999999999999986 678999999999999999999999999
Q ss_pred HHHhcCCCCcchhHHHHHHHHHhhCChhHHHHHhccCCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHH
Q 040319 258 ALLERMPVMDIITLTEIIIAYMEFGYVDLAVEIFDKMPEKNSVSYNALLAGYCKNGKAMEALGLFVKLLEEGLVLTEFTL 337 (812)
Q Consensus 258 ~l~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~ 337 (812)
++|+.|.+.+ ..|+..+||++|.+|++.|++++|.++|++|.+.|+.||..||
T Consensus 600 elf~~M~e~g---------------------------i~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~Ty 652 (1060)
T PLN03218 600 EVYQMIHEYN---------------------------IKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFF 652 (1060)
T ss_pred HHHHHHHHcC---------------------------CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Confidence 9554432221 1467899999999999999999999999999999999999999
Q ss_pred HHHHHHhccchhhhhHHHHHhhHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC--CCCceeeeHHHHHHHHHc
Q 040319 338 TSVVNACGLIMEAKLSEQIHGFVMKFGLGSNDCIEAALLDMLTRCGRMADAEKMFYRWPT--DRDDSIIWTSMICGYARS 415 (812)
Q Consensus 338 ~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~--~~~~~~~~~~li~~~~~~ 415 (812)
+.++.+|++.|+++.|.++++.|.+.|+.|+..+|++||.+|+++|++++|.++|++|.. ..||.++||+||.+|++.
T Consensus 653 nsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~ 732 (1060)
T PLN03218 653 SALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEG 732 (1060)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC
Confidence 999999999999999999999999999999999999999999999999999999999852 256799999999999999
Q ss_pred CChhhHHHHHHHhcccCCCCCChhhHHHHHHHhcCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHh----hhcCCHHH
Q 040319 416 GKPEHAILLFHQSQSEATVVPDEIALTSVLGVCGTLGFHEMGKQIHSYALKTGFSSDLGVANSMVSMY----FKCCNMSN 491 (812)
Q Consensus 416 g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y----~k~g~~~~ 491 (812)
|++++|+++|++|.. .|+.||..||++++.+|++.|+++.|.++|..|.+.|+.||..+|++|+.++ .+++...+
T Consensus 733 G~~eeAlelf~eM~~-~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~ 811 (1060)
T PLN03218 733 NQLPKALEVLSEMKR-LGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGE 811 (1060)
T ss_pred CCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhh
Confidence 999999999999998 9999999999999999999999999999999999999999999999999874 44555555
Q ss_pred HHHHHccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCchHHHHHHHHHHhhhhc
Q 040319 492 AIKAFNKMPSHDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDAITFVLIISAYRYTNLNLVDSCRKLFLSMKTIY 571 (812)
Q Consensus 492 A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~ 571 (812)
+...|+.+...+...|+ ++|+.+|++|++.|+.||.+||+.+|.++.. .+....+..+++.|.. .
T Consensus 812 ~v~~f~~g~~~~~n~w~------------~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~--~~~~~~~~~m~~~m~~-~ 876 (1060)
T PLN03218 812 PVVSFDSGRPQIENKWT------------SWALMVYRETISAGTLPTMEVLSQVLGCLQL--PHDATLRNRLIENLGI-S 876 (1060)
T ss_pred hhhhhhccccccccchH------------HHHHHHHHHHHHCCCCCCHHHHHHHHHHhcc--cccHHHHHHHHHHhcc-C
Confidence 55555544434444554 4699999999999999999999999977666 7888888888877764 5
Q ss_pred CccCCcchHHHHHHHHhhcCChHHHHHHHHhCC---CCCCHH
Q 040319 572 NIEPTSEHYASLVSVLGYWGFLEEAEETINNMP---FQPKVS 610 (812)
Q Consensus 572 ~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~---~~p~~~ 610 (812)
+..|+..+|+++|+++++. .++|..++++|. +.|+..
T Consensus 877 ~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 877 ADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred CCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 6777889999999998542 478999999986 667654
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-64 Score=583.32 Aligned_cols=504 Identities=15% Similarity=0.223 Sum_probs=386.0
Q ss_pred CCchHHHHHHHHHhhhcCCCHHHHHHHHhcCCCCCcc-----hHHHHHHHHHcCCChhHHHHHHHHhHhcCCCCCCcchH
Q 040319 131 VDSVFVTNALMGLYGKFSFCLDYLLKLFDELPHKDTV-----SWNTVISSVVNEFEYEKAFELFRDMKRDNGFTVDYFTI 205 (812)
Q Consensus 131 ~~~~~~~~~li~~y~~~g~~~~~a~~~f~~~~~~~~~-----~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~ 205 (812)
.++...+..++..+++.| ++++|.++|++|++++.. .++.++.+|.+.|..++|+.+|+.| .. ||..||
T Consensus 367 ~~~~~~~~~~y~~l~r~G-~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M-~~----pd~~Ty 440 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDG-RIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLI-RN----PTLSTF 440 (1060)
T ss_pred CCCchHHHHHHHHHHHCc-CHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHc-CC----CCHHHH
Confidence 344455555555566666 666666666666554433 3334445566666666666666666 32 666666
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCcchhHHHHHHHHHhhCChh
Q 040319 206 STLLTACTGCFVLMEGRAVHAHAIRIGLGANLSVNNALIGFYTKCGRVKDVVALLERMPVMDIITLTEIIIAYMEFGYVD 285 (812)
Q Consensus 206 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~li~~~~~~g~~~ 285 (812)
+.+|.+|++.|+++.|.++|+.|.+.|+.||..+||+||.+|+++|++++|.+
T Consensus 441 n~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~--------------------------- 493 (1060)
T PLN03218 441 NMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFE--------------------------- 493 (1060)
T ss_pred HHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHH---------------------------
Confidence 66666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHhccCC----CCCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHhccchhhhhHHHHHhhHH
Q 040319 286 LAVEIFDKMP----EKNSVSYNALLAGYCKNGKAMEALGLFVKLLEEGLVLTEFTLTSVVNACGLIMEAKLSEQIHGFVM 361 (812)
Q Consensus 286 ~A~~~f~~m~----~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~ 361 (812)
+|++|. .||.++|++||.+|++.|++++|+++|++|.+.|+.||..||+.+|.+|++.|+++.|.+++..|.
T Consensus 494 ----vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~ 569 (1060)
T PLN03218 494 ----VFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMK 569 (1060)
T ss_pred ----HHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 333333 356666777777777777777777777777777777887788888888777777777877777776
Q ss_pred H--hcCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCC--CCceeeeHHHHHHHHHcCChhhHHHHHHHhcccCCCCCC
Q 040319 362 K--FGLGSNDCIEAALLDMLTRCGRMADAEKMFYRWPTD--RDDSIIWTSMICGYARSGKPEHAILLFHQSQSEATVVPD 437 (812)
Q Consensus 362 ~--~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~ 437 (812)
+ .|+.||..+|++||++|+++|++++|.++|+.|... +++..+||++|.+|++.|++++|+++|++|.. .|+.||
T Consensus 570 ~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~-~Gv~PD 648 (1060)
T PLN03218 570 AETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKK-KGVKPD 648 (1060)
T ss_pred HhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCCCC
Confidence 5 567788888888888888888888888888887632 34578888888888888888888888888888 888888
Q ss_pred hhhHHHHHHHhcCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHhhhcCCHHHHHHHHccCC----CCChhHHHHHHHH
Q 040319 438 EIALTSVLGVCGTLGFHEMGKQIHSYALKTGFSSDLGVANSMVSMYFKCCNMSNAIKAFNKMP----SHDIVSWNGLIAG 513 (812)
Q Consensus 438 ~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~----~~~~~~~~~li~~ 513 (812)
..||++++.+|++.|+++.|.+++..|.+.|+.||..+|++||++|+++|++++|.++|++|. .||+.+||+||.+
T Consensus 649 ~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~g 728 (1060)
T PLN03218 649 EVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITA 728 (1060)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 888888888888888888888888888888888888889999999999999999998888885 4888889999999
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCCcchHHHHHHHHh----h
Q 040319 514 HLLHRQGDEALAVWSSMEKASIKPDAITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLG----Y 589 (812)
Q Consensus 514 ~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~----~ 589 (812)
|++.|++++|+++|++|.+.|+.||..||+.++.+|++ .|++++|.++|+.|.+ .|+.|+..+|+++++++. +
T Consensus 729 y~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k--~G~le~A~~l~~~M~k-~Gi~pd~~tynsLIglc~~~y~k 805 (1060)
T PLN03218 729 LCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASER--KDDADVGLDLLSQAKE-DGIKPNLVMCRCITGLCLRRFEK 805 (1060)
T ss_pred HHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999888888999999999988888 8889999999988886 788888888888887633 2
Q ss_pred c-------------------CChHHHHHHHHhCC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-ccCCCCCchH
Q 040319 590 W-------------------GFLEEAEETINNMP---FQPKVSVWRALLDSCRIRLNTTIGKRVAKHIL-AMEPQDPATY 646 (812)
Q Consensus 590 ~-------------------g~~~~A~~~~~~m~---~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~-~~~p~~~~~~ 646 (812)
+ +..++|+.+|++|. +.||..+|.+++.++.+.+..+.+..+++.+. .-.+.+..+|
T Consensus 806 a~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y 885 (1060)
T PLN03218 806 ACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNL 885 (1060)
T ss_pred HhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhh
Confidence 2 23467999999987 88999999999977778888888888876643 2234467788
Q ss_pred HHHHhhhhhCCCc-chHHHHHHHHHhCCCCCCC
Q 040319 647 ILVSNLYSSSGRW-HNSELVREDMREKGFRKHP 678 (812)
Q Consensus 647 ~~l~~~y~~~g~~-~~a~~~~~~m~~~g~~~~~ 678 (812)
..|.+.+ |++ ++|..++++|...|+.+..
T Consensus 886 ~~Li~g~---~~~~~~A~~l~~em~~~Gi~p~~ 915 (1060)
T PLN03218 886 STLVDGF---GEYDPRAFSLLEEAASLGVVPSV 915 (1060)
T ss_pred HHHHHhh---ccChHHHHHHHHHHHHcCCCCCc
Confidence 9998877 444 5899999999999997664
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-34 Score=345.34 Aligned_cols=649 Identities=13% Similarity=0.036 Sum_probs=463.9
Q ss_pred HhHhccCCchHHHHHHHHHHHhccCCCccchHHHHHHHHccCChhhHHHHHhcCC---CCChhhHHHHHHHHHhcCChhH
Q 040319 6 RLSVQCGEVSLAKAIHASLIKLLLEQDTRFGNPLISAYLKLGHVADAYKIFYGLS---SPNVVSFTSLISGLAKLGREEE 82 (812)
Q Consensus 6 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~ 82 (812)
..+...|++..|..++..+++.. +.+...+..+...+...|++++|...|+... ..+...+..++..+...|++++
T Consensus 167 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g~~~~ 245 (899)
T TIGR02917 167 QLALAENRFDEARALIDEVLTAD-PGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNPAVLLALATILIEAGEFEE 245 (899)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 34455666666666666665543 3344555555666666666666666665542 2344455555555556666666
Q ss_pred HHHHHHHHHHCCCC--------------------------------CC-hhhHHHHHHHHHhcCChHHHHHHHHHHHHhC
Q 040319 83 AIELFFRMRSEGIV--------------------------------PN-EHSFVAILTACIRLLELELGFQIHALIVKMG 129 (812)
Q Consensus 83 a~~~~~~m~~~g~~--------------------------------p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g 129 (812)
|...++.+.+.... |+ ...+..+...+...|+++.|...+..+.+..
T Consensus 246 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 325 (899)
T TIGR02917 246 AEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYA 325 (899)
T ss_pred HHHHHHHHHHhCCCCchHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 66555555443211 11 1112222233445556666666666555543
Q ss_pred CCCchHHHHHHHHHhhhcCCCHHHHHHHHhcCCC---CCcchHHHHHHHHHcCCChhHHHHHHHHhHhcCCCCC-CcchH
Q 040319 130 CVDSVFVTNALMGLYGKFSFCLDYLLKLFDELPH---KDTVSWNTVISSVVNEFEYEKAFELFRDMKRDNGFTV-DYFTI 205 (812)
Q Consensus 130 ~~~~~~~~~~li~~y~~~g~~~~~a~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~p-d~~t~ 205 (812)
+.+......+...+.+.| +.+.|...++.+.. .+...|+.+...+.+.|++++|.+.|+++ .. ..| +...+
T Consensus 326 -p~~~~~~~~la~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~--~~~~~~~~~ 400 (899)
T TIGR02917 326 -PNSHQARRLLASIQLRLG-RVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKA-TE--LDPENAAAR 400 (899)
T ss_pred -CCChHHHHHHHHHHHHCC-CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH-Hh--cCCCCHHHH
Confidence 234455556666677777 77777777766542 34556777777777777777777777776 32 223 33345
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCC---CCcchhHHHHHHHHHhhC
Q 040319 206 STLLTACTGCFVLMEGRAVHAHAIRIGLGANLSVNNALIGFYTKCGRVKDVVALLERMP---VMDIITLTEIIIAYMEFG 282 (812)
Q Consensus 206 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~---~~~~~~~~~li~~~~~~g 282 (812)
..+...+...|+.+.|.+.+..+.+... ........++..|.+.|++++|..+++.+. ..+..+|..+...|...|
T Consensus 401 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 479 (899)
T TIGR02917 401 TQLGISKLSQGDPSEAIADLETAAQLDP-ELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKG 479 (899)
T ss_pred HHHHHHHHhCCChHHHHHHHHHHHhhCC-cchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCC
Confidence 5556666677777777777777776542 233445566777778888888888777764 235567788888888888
Q ss_pred ChhHHHHHhccCCC---CCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHhccchhhhhHHHHHhh
Q 040319 283 YVDLAVEIFDKMPE---KNSVSYNALLAGYCKNGKAMEALGLFVKLLEEGLVLTEFTLTSVVNACGLIMEAKLSEQIHGF 359 (812)
Q Consensus 283 ~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~ 359 (812)
++++|.+.|+++.+ .+...+..+...+...|++++|.+.|+++...+ +.+..++..+...+...|+.+.+...+..
T Consensus 480 ~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 558 (899)
T TIGR02917 480 DLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEK 558 (899)
T ss_pred CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 88888888887643 344566677778888888888888888887754 23556677777777778888888888888
Q ss_pred HHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCC-CCceeeeHHHHHHHHHcCChhhHHHHHHHhcccCCCCC-C
Q 040319 360 VMKFGLGSNDCIEAALLDMLTRCGRMADAEKMFYRWPTD-RDDSIIWTSMICGYARSGKPEHAILLFHQSQSEATVVP-D 437 (812)
Q Consensus 360 ~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p-~ 437 (812)
+.+.+ +.+...+..+...|.+.|++++|..+++.+... +++...|..+...|.+.|++++|+..|+++.. ..| +
T Consensus 559 ~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~ 634 (899)
T TIGR02917 559 AAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLA---LQPDS 634 (899)
T ss_pred HHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCC
Confidence 77654 345566777888888888888888888877532 33466788888888888999999998888876 334 3
Q ss_pred hhhHHHHHHHhcCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHhhhcCCHHHHHHHHccCCC---CChhHHHHHHHHH
Q 040319 438 EIALTSVLGVCGTLGFHEMGKQIHSYALKTGFSSDLGVANSMVSMYFKCCNMSNAIKAFNKMPS---HDIVSWNGLIAGH 514 (812)
Q Consensus 438 ~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~ 514 (812)
...+..+...+...|+++.|..++..+.+.. +.+...+..++..+.+.|++++|.++++.+.+ ++...|..+...+
T Consensus 635 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 713 (899)
T TIGR02917 635 ALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLY 713 (899)
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHH
Confidence 4456677778888888999988888887743 34577888888889999999999998888765 4567788888888
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCCcchHHHHHHHHhhcCChH
Q 040319 515 LLHRQGDEALAVWSSMEKASIKPDAITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLE 594 (812)
Q Consensus 515 ~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~ 594 (812)
...|++++|++.|+++.. ..|+..++..+..++.. .|++++|.+.++.+.+. .+.+...+..+..+|.+.|+.+
T Consensus 714 ~~~g~~~~A~~~~~~~~~--~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~g~~~ 787 (899)
T TIGR02917 714 LRQKDYPAAIQAYRKALK--RAPSSQNAIKLHRALLA--SGNTAEAVKTLEAWLKT--HPNDAVLRTALAELYLAQKDYD 787 (899)
T ss_pred HHCCCHHHHHHHHHHHHh--hCCCchHHHHHHHHHHH--CCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCcCHH
Confidence 999999999999999988 56777777778888888 89999999999888763 3445788889999999999999
Q ss_pred HHHHHHHhCC-C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCCcchHHHHHHHHHhC
Q 040319 595 EAEETINNMP-F-QPKVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWHNSELVREDMREK 672 (812)
Q Consensus 595 ~A~~~~~~m~-~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 672 (812)
+|.+.++++. . +++..++..+...+...|+ .+|...+++++++.|+++..+..++.+|...|++++|.+.++++.+.
T Consensus 788 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 866 (899)
T TIGR02917 788 KAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNI 866 (899)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 9999999875 3 4467889999999999999 77999999999999999999999999999999999999999998665
Q ss_pred CC
Q 040319 673 GF 674 (812)
Q Consensus 673 g~ 674 (812)
+.
T Consensus 867 ~~ 868 (899)
T TIGR02917 867 AP 868 (899)
T ss_pred CC
Confidence 43
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-34 Score=344.54 Aligned_cols=583 Identities=13% Similarity=0.026 Sum_probs=495.4
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHhhhcC
Q 040319 69 SLISGLAKLGREEEAIELFFRMRSEGIVPNEHSFVAILTACIRLLELELGFQIHALIVKMGCVDSVFVTNALMGLYGKFS 148 (812)
Q Consensus 69 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g 148 (812)
.+...+...|++++|...|++..+.. +.+...+..+...+.+.|+++.|...+..+.+.. +.+...+..+...|.+.|
T Consensus 300 ~~~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g 377 (899)
T TIGR02917 300 LAGASEYQLGNLEQAYQYLNQILKYA-PNSHQARRLLASIQLRLGRVDEAIATLSPALGLD-PDDPAALSLLGEAYLALG 377 (899)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCC
Confidence 34445667788888888888877653 3456677778888999999999999999988765 456778888999999999
Q ss_pred CCHHHHHHHHhcCCC---CCcchHHHHHHHHHcCCChhHHHHHHHHhHhcCCCCCCcchHHHHHHHHhcCCChHHHHHHH
Q 040319 149 FCLDYLLKLFDELPH---KDTVSWNTVISSVVNEFEYEKAFELFRDMKRDNGFTVDYFTISTLLTACTGCFVLMEGRAVH 225 (812)
Q Consensus 149 ~~~~~a~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~ 225 (812)
+.+.|.+.|+++.+ .+...|..+...+...|++++|++.|+.+ ..... .+......++..+...|+.+.|.+++
T Consensus 378 -~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a-~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~ 454 (899)
T TIGR02917 378 -DFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETA-AQLDP-ELGRADLLLILSYLRSGQFDKALAAA 454 (899)
T ss_pred -CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHH-HhhCC-cchhhHHHHHHHHHhcCCHHHHHHHH
Confidence 99999999998753 35677888889999999999999999988 43321 22344556777888999999999999
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCC---CCcchhHHHHHHHHHhhCChhHHHHHhccCCC---CCc
Q 040319 226 AHAIRIGLGANLSVNNALIGFYTKCGRVKDVVALLERMP---VMDIITLTEIIIAYMEFGYVDLAVEIFDKMPE---KNS 299 (812)
Q Consensus 226 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~d~ 299 (812)
..+.+. .+.+..+++.+...|...|++++|...|+++. ..+...+..+...+...|++++|.+.|+++.+ .+.
T Consensus 455 ~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~ 533 (899)
T TIGR02917 455 KKLEKK-QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNL 533 (899)
T ss_pred HHHHHh-CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcH
Confidence 999874 46678899999999999999999999999874 34566788889999999999999999998864 456
Q ss_pred ccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHhccchhhhhHHHHHhhHHHhcCCCchhHHHHHHHHH
Q 040319 300 VSYNALLAGYCKNGKAMEALGLFVKLLEEGLVLTEFTLTSVVNACGLIMEAKLSEQIHGFVMKFGLGSNDCIEAALLDML 379 (812)
Q Consensus 300 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y 379 (812)
.++..+...+.+.|+.++|..+|.++...+ ..+...+..+...+...|+++.+..++..+.+.. +.+..++..+...|
T Consensus 534 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 611 (899)
T TIGR02917 534 RAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQ 611 (899)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHH
Confidence 688899999999999999999999998764 3455667778888999999999999999987643 55678899999999
Q ss_pred HhcCCHHHHHHHHhcCCCC-CCceeeeHHHHHHHHHcCChhhHHHHHHHhcccCCCCCC-hhhHHHHHHHhcCccchHHH
Q 040319 380 TRCGRMADAEKMFYRWPTD-RDDSIIWTSMICGYARSGKPEHAILLFHQSQSEATVVPD-EIALTSVLGVCGTLGFHEMG 457 (812)
Q Consensus 380 ~~~g~~~~A~~~f~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~-~~t~~~ll~a~~~~~~~~~a 457 (812)
.+.|++++|...|+.+... +++...|..+...|.+.|++++|+..|+++.. ..|+ ..++..+...+...|+++.|
T Consensus 612 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~A 688 (899)
T TIGR02917 612 LAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALE---LKPDNTEAQIGLAQLLLAAKRTESA 688 (899)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 9999999999999987522 34567789999999999999999999999986 4454 56788888999999999999
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHhhhcCCHHHHHHHHccCCC--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 040319 458 KQIHSYALKTGFSSDLGVANSMVSMYFKCCNMSNAIKAFNKMPS--HDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASI 535 (812)
Q Consensus 458 ~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 535 (812)
..++..+.+.. +.+...+..+...|.+.|++++|...|+.+.. |+..++..++..+...|++++|.+.++++.+.
T Consensus 689 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~-- 765 (899)
T TIGR02917 689 KKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKT-- 765 (899)
T ss_pred HHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh--
Confidence 99999998865 45777888899999999999999999998765 67788888999999999999999999999984
Q ss_pred CCC-HHHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCCcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHH
Q 040319 536 KPD-AITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLEEAEETINNMP-FQP-KVSVW 612 (812)
Q Consensus 536 ~pd-~~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~ 612 (812)
.|+ ...+..+...|.. .|+.++|.++|+.+.+. -++++..+..+..++...|+ ++|++.++++. ..| +..++
T Consensus 766 ~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~ 840 (899)
T TIGR02917 766 HPNDAVLRTALAELYLA--QKDYDKAIKHYRTVVKK--APDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAIL 840 (899)
T ss_pred CCCCHHHHHHHHHHHHH--CcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHH
Confidence 454 4677777778888 99999999999999863 24467889999999999999 88999999864 455 56788
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCCcchHHHHHHHHH
Q 040319 613 RALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWHNSELVREDMR 670 (812)
Q Consensus 613 ~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 670 (812)
..+...+...|++++|...++++++.+|.++.++..++.+|.+.|++++|.+++++|.
T Consensus 841 ~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 841 DTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 8888899999999999999999999999999999999999999999999999999884
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PF14432 DYW_deaminase: DYW family of nucleic acid deaminases | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-38 Score=266.84 Aligned_cols=106 Identities=53% Similarity=0.919 Sum_probs=98.7
Q ss_pred ceeEEEECCEEEEEeeCCCCCcchHHHHHHHHHHHHHHHHcCcccCCCccccccchhhh--------hhhhhhhhHHHHH
Q 040319 679 SRSWIIHQNKVHSFYVRDKSHPREKDIYSGLEILILECLKAGYVPDTSFVLHEVEEHQK--------KDFLFYHSAKLAA 750 (812)
Q Consensus 679 ~~s~~~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~~~~~g~~~~~~~~~~~~~~~~~--------~~~~~~hse~la~ 750 (812)
||||+++ |.|++||.+||+. ++..++...||.|++..+.|+++++++ +..+++||||||+
T Consensus 2 ~~~w~~~----h~F~sgd~shp~~--------~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~d~~~~~~~~~~HSEKlAi 69 (116)
T PF14432_consen 2 GCSWIEV----HSFVSGDRSHPQS--------ELINKMKEEGYVPDTKEVGHDVDEEEKHDYDEEEKEESLCYHSEKLAI 69 (116)
T ss_pred CCCccce----EEEEeCCCcCccH--------HHHHHHHHcCCcchhhhhCCCchhhhhhhcccccchhhhhccHHHHHH
Confidence 7999977 9999999999998 455678889999999999999888776 5699999999999
Q ss_pred HHhhcCCCCCCcEEEEccc-ccccchhhHHHHhhhhcceEEEEecCCcccccc
Q 040319 751 TYGLLTTPAGQPVRIVKNI-LTCGDCHSFLKYVSVVTRREIFLRDASGFHHFL 802 (812)
Q Consensus 751 ~~~~~~~~~~~~~~~~~n~-~~c~~ch~~~k~~s~~~~r~i~~rd~~~~h~f~ 802 (812)
||||+++ ||+||+ |||+|||+++|+||+++||+|||||++|||||+
T Consensus 70 afgli~~------~vvkn~~RvC~DCH~~~K~iS~~~~ReIiVRD~~rfHhFk 116 (116)
T PF14432_consen 70 AFGLINT------RVVKNLKRVCGDCHSFIKFISKITGREIIVRDSNRFHHFK 116 (116)
T ss_pred Hhcccce------eEEecCCccchHHHHHHHHHHHHHCeEEEEeCCCeeeeCC
Confidence 9999999 999999 999999999999999999999999999999997
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=3e-23 Score=251.91 Aligned_cols=626 Identities=13% Similarity=0.046 Sum_probs=386.3
Q ss_pred hccCCchHHHHHHHHHHHhccCCCccchHHHHHHHHccCChhhHHHHHhcCCC--CChhhH-----------------HH
Q 040319 9 VQCGEVSLAKAIHASLIKLLLEQDTRFGNPLISAYLKLGHVADAYKIFYGLSS--PNVVSF-----------------TS 69 (812)
Q Consensus 9 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~--~~~~~~-----------------~~ 69 (812)
...++.+.|++.+..++... +.++.+...++..+.+.|+.++|.+.+++..+ |+...+ -.
T Consensus 39 ~~~~~~d~a~~~l~kl~~~~-p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~ 117 (1157)
T PRK11447 39 EATHREDLVRQSLYRLELID-PNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQ 117 (1157)
T ss_pred HhhCChHHHHHHHHHHHccC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHHH
Confidence 34455555555555554432 22344455555555555666555555555432 221111 11
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCChhh-HHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHhhhcC
Q 040319 70 LISGLAKLGREEEAIELFFRMRSEGIVPNEHS-FVAILTACIRLLELELGFQIHALIVKMGCVDSVFVTNALMGLYGKFS 148 (812)
Q Consensus 70 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g 148 (812)
+...+...|++++|++.|+.+.+.. +|+... ...........++.++|...++.+.+.. +.++.....+-..+...|
T Consensus 118 ~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~~g 195 (1157)
T PRK11447 118 QARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLLFSSG 195 (1157)
T ss_pred HHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHccC
Confidence 1223445555555555555555432 222111 0011111122355555555555555543 223344445555555555
Q ss_pred CCHHHHHHHHhcCCCCCcchHHHHHHHHHcCCChhHHHHHHHHhHhcCCCCCCc-chHHHHHHHHhcCCChHHHHHHHHH
Q 040319 149 FCLDYLLKLFDELPHKDTVSWNTVISSVVNEFEYEKAFELFRDMKRDNGFTVDY-FTISTLLTACTGCFVLMEGRAVHAH 227 (812)
Q Consensus 149 ~~~~~a~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~-~t~~~ll~~~~~~~~~~~a~~~~~~ 227 (812)
+.++|.+.|+++....... ...+...+..+ ...+..|+. ..+...+..+-.......+...+..
T Consensus 196 -~~~eAl~~l~~~~~~~~~~-------------~~aa~~~~~~l-~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~ 260 (1157)
T PRK11447 196 -RRDEGFAVLEQMAKSPAGR-------------DAAAQLWYGQI-KDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAE 260 (1157)
T ss_pred -CHHHHHHHHHHHhhCCCch-------------HHHHHHHHHHH-hccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHH
Confidence 5555555555543211000 00000001111 111111111 1122223333333334455555555
Q ss_pred HHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCC---CCcchhHHHHHHHHHhhCChhHHHHHhccCCC--CCc---
Q 040319 228 AIRIGLGANLSVNNALIGFYTKCGRVKDVVALLERMP---VMDIITLTEIIIAYMEFGYVDLAVEIFDKMPE--KNS--- 299 (812)
Q Consensus 228 ~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~d~--- 299 (812)
..+....|+.. ...+...+...|++++|...|++.. ..+...+..+...|.+.|+.++|+..|++..+ |+.
T Consensus 261 ~~~~~~dp~~~-~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~ 339 (1157)
T PRK11447 261 QQKQLADPAFR-ARAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNR 339 (1157)
T ss_pred HHHhccCcchH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccch
Confidence 44433233322 1233455667778888887777763 23556677777777778888888877776654 221
Q ss_pred ccHHHH------------HHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHhccchhhhhHHHHHhhHHHhcCCC
Q 040319 300 VSYNAL------------LAGYCKNGKAMEALGLFVKLLEEGLVLTEFTLTSVVNACGLIMEAKLSEQIHGFVMKFGLGS 367 (812)
Q Consensus 300 ~~~~~l------------i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~ 367 (812)
..|..+ ...+.+.|++++|+..|++.++... .+...+..+-..+...|+.+.|.+.+..+++... .
T Consensus 340 ~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p-~ 417 (1157)
T PRK11447 340 DKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDN-TDSYAVLGLGDVAMARKDYAAAERYYQQALRMDP-G 417 (1157)
T ss_pred hHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-C
Confidence 112222 2356678888888888888887532 2344555566677778888888888888877542 2
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCCc----------eeeeHHHHHHHHHcCChhhHHHHHHHhcccCCCCCC
Q 040319 368 NDCIEAALLDMLTRCGRMADAEKMFYRWPTDRDD----------SIIWTSMICGYARSGKPEHAILLFHQSQSEATVVPD 437 (812)
Q Consensus 368 ~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~----------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~ 437 (812)
+...+..+...|. .++.++|...++.++...+. ...+..+...+...|++++|++.|++..+ ..|+
T Consensus 418 ~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~---~~P~ 493 (1157)
T PRK11447 418 NTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLA---LDPG 493 (1157)
T ss_pred CHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCC
Confidence 3455566666664 45788898888876522110 12344566778889999999999999987 5676
Q ss_pred hh-hHHHHHHHhcCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHhhhcCCHHHHHHHHccCCCC----Chh-------
Q 040319 438 EI-ALTSVLGVCGTLGFHEMGKQIHSYALKTGFSSDLGVANSMVSMYFKCCNMSNAIKAFNKMPSH----DIV------- 505 (812)
Q Consensus 438 ~~-t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~----~~~------- 505 (812)
.. .+..+...+...|++++|...++.+++.. +.+...+..+...+.+.|+.++|...++.+... +..
T Consensus 494 ~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~ 572 (1157)
T PRK11447 494 SVWLTYRLAQDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQ 572 (1157)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHh
Confidence 44 45566778889999999999999988743 234555555666778899999999999988642 111
Q ss_pred --HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCC-cchHHH
Q 040319 506 --SWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDAITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPT-SEHYAS 582 (812)
Q Consensus 506 --~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~ 582 (812)
.+..+...+...|+.++|+++++. ..++...+..+...+.. .|++++|+..|+...+ ..|+ ...+..
T Consensus 573 ~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~--~g~~~~A~~~y~~al~---~~P~~~~a~~~ 642 (1157)
T PRK11447 573 SDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQ--RGDYAAARAAYQRVLT---REPGNADARLG 642 (1157)
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHH--cCCHHHHHHHHHHHHH---hCCCCHHHHHH
Confidence 123456678899999999999872 23344556666677777 9999999999999987 3454 788999
Q ss_pred HHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCc------hHHHHHhhhh
Q 040319 583 LVSVLGYWGFLEEAEETINNMP-FQP-KVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPA------TYILVSNLYS 654 (812)
Q Consensus 583 li~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~------~~~~l~~~y~ 654 (812)
++.+|...|++++|++.++..+ ..| +..++..+..++...|+.++|...++++++..|+++. .+..++.+|.
T Consensus 643 la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~ 722 (1157)
T PRK11447 643 LIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEA 722 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHH
Confidence 9999999999999999999876 555 4667777888888999999999999999998876553 5666799999
Q ss_pred hCCCcchHHHHHHHHH
Q 040319 655 SSGRWHNSELVREDMR 670 (812)
Q Consensus 655 ~~g~~~~a~~~~~~m~ 670 (812)
+.|++++|.+.+++..
T Consensus 723 ~~G~~~~A~~~y~~Al 738 (1157)
T PRK11447 723 QTGQPQQALETYKDAM 738 (1157)
T ss_pred HcCCHHHHHHHHHHHH
Confidence 9999999999987764
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.5e-22 Score=243.97 Aligned_cols=602 Identities=11% Similarity=0.036 Sum_probs=432.9
Q ss_pred HHHHHHHccCChhhHHHHHhcCC---CCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhH------------
Q 040319 38 PLISAYLKLGHVADAYKIFYGLS---SPNVVSFTSLISGLAKLGREEEAIELFFRMRSEGIVPNEHSF------------ 102 (812)
Q Consensus 38 ~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~------------ 102 (812)
..++.+-..++.+.|.+.++++. ..|...+..++..+.+.|+.++|.+.+++..+.. |+...+
T Consensus 33 ~q~~~~~~~~~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~--P~~~~~~~~~~~~~~~~~ 110 (1157)
T PRK11447 33 EQVRLGEATHREDLVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA--PDSNAYRSSRTTMLLSTP 110 (1157)
T ss_pred HHHHHHHhhCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--CCChHHHHHHHHHHhcCC
Confidence 34455677899999999998764 3456778888999999999999999999998864 443222
Q ss_pred -----HHHHHHHHhcCChHHHHHHHHHHHHhCCCCchHHHH-HHHHHhhhcCCCHHHHHHHHhcCCC--C-CcchHHHHH
Q 040319 103 -----VAILTACIRLLELELGFQIHALIVKMGCVDSVFVTN-ALMGLYGKFSFCLDYLLKLFDELPH--K-DTVSWNTVI 173 (812)
Q Consensus 103 -----~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~-~li~~y~~~g~~~~~a~~~f~~~~~--~-~~~~~~~li 173 (812)
....+.+...|++++|.+.+..+.+.. +++..... .+.......| +.++|.+.++++.. | +...+..+.
T Consensus 111 ~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g-~~~~A~~~L~~ll~~~P~~~~~~~~LA 188 (1157)
T PRK11447 111 EGRQALQQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPA-QRPEAINQLQRLNADYPGNTGLRNTLA 188 (1157)
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCc-cHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 223346778899999999999988764 23322111 1122223457 89999999998774 3 556788888
Q ss_pred HHHHcCCChhHHHHHHHHhHhcCCCCCCcchHHHHHHHHhcCCChHHHHHHHHHHHHhCCCC-chhHHHHHHHHHHhcCC
Q 040319 174 SSVVNEFEYEKAFELFRDMKRDNGFTVDYFTISTLLTACTGCFVLMEGRAVHAHAIRIGLGA-NLSVNNALIGFYTKCGR 252 (812)
Q Consensus 174 ~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~-~~~~~~~li~~~~~~g~ 252 (812)
..+...|++++|++.|+++ ... .+.. ...+...+..+...+..+ ....+...+..+-....
T Consensus 189 ~ll~~~g~~~eAl~~l~~~-~~~--~~~~---------------~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~ 250 (1157)
T PRK11447 189 LLLFSSGRRDEGFAVLEQM-AKS--PAGR---------------DAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDS 250 (1157)
T ss_pred HHHHccCCHHHHHHHHHHH-hhC--CCch---------------HHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchH
Confidence 8999999999999999988 332 1110 011111122222222111 12233333444444444
Q ss_pred hHHHHHHHhcCCC--Ccch-hHHHHHHHHHhhCChhHHHHHhccCCC---CCcccHHHHHHHHHhCCChHHHHHHHHHHH
Q 040319 253 VKDVVALLERMPV--MDII-TLTEIIIAYMEFGYVDLAVEIFDKMPE---KNSVSYNALLAGYCKNGKAMEALGLFVKLL 326 (812)
Q Consensus 253 ~~~A~~l~~~~~~--~~~~-~~~~li~~~~~~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~A~~l~~~m~ 326 (812)
.+.|...+..... .|.. ........+...|++++|+..|++..+ .|...+..+...|.+.|++++|+..|++..
T Consensus 251 ~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al 330 (1157)
T PRK11447 251 VAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKAL 330 (1157)
T ss_pred HHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5566666655421 1221 122345677889999999999998765 356788899999999999999999999998
Q ss_pred HcCCCCCH-hHHH------------HHHHHhccchhhhhHHHHHhhHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHh
Q 040319 327 EEGLVLTE-FTLT------------SVVNACGLIMEAKLSEQIHGFVMKFGLGSNDCIEAALLDMLTRCGRMADAEKMFY 393 (812)
Q Consensus 327 ~~g~~p~~-~t~~------------~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~ 393 (812)
+....... ..+. ..-..+...|++++|...+..+++... .+...+..|...|...|++++|++.|+
T Consensus 331 ~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~y~ 409 (1157)
T PRK11447 331 ALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDN-TDSYAVLGLGDVAMARKDYAAAERYYQ 409 (1157)
T ss_pred HhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 76432211 1111 112345678999999999999998743 456677789999999999999999999
Q ss_pred cCCCC-CCceeeeHHHHHHHHHcCChhhHHHHHHHhcccCCCCC--------ChhhHHHHHHHhcCccchHHHHHHHHHH
Q 040319 394 RWPTD-RDDSIIWTSMICGYARSGKPEHAILLFHQSQSEATVVP--------DEIALTSVLGVCGTLGFHEMGKQIHSYA 464 (812)
Q Consensus 394 ~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p--------~~~t~~~ll~a~~~~~~~~~a~~~~~~~ 464 (812)
+.... +++...+..+...|. .++.++|+..++.+.. ....+ ....+..+...+...|++++|...++.+
T Consensus 410 ~aL~~~p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~-~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~A 487 (1157)
T PRK11447 410 QALRMDPGNTNAVRGLANLYR-QQSPEKALAFIASLSA-SQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQR 487 (1157)
T ss_pred HHHHhCCCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCH-HHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 87633 334556666766664 4678999999877654 11000 0112334456677889999999999999
Q ss_pred HHhCCCCchhHHHHHHHHhhhcCCHHHHHHHHccCCC--C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH
Q 040319 465 LKTGFSSDLGVANSMVSMYFKCCNMSNAIKAFNKMPS--H-DIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDAIT 541 (812)
Q Consensus 465 ~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t 541 (812)
++.. +.+..++..+...|.+.|++++|...|+++.+ | +...+..+...+...|+.++|+..++++......++...
T Consensus 488 l~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~ 566 (1157)
T PRK11447 488 LALD-PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQE 566 (1157)
T ss_pred HHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHH
Confidence 9864 33567788899999999999999999998754 3 455666666667889999999999988654333333211
Q ss_pred ---------HHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCCcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHH
Q 040319 542 ---------FVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLEEAEETINNMP-FQP-KVS 610 (812)
Q Consensus 542 ---------~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p-~~~ 610 (812)
+..+...+.. .|+.++|.++++. .+++...+..+.+.+.+.|++++|++.+++.. ..| +..
T Consensus 567 l~~~l~~~~~l~~a~~l~~--~G~~~eA~~~l~~------~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~ 638 (1157)
T PRK11447 567 LAQRLQSDQVLETANRLRD--SGKEAEAEALLRQ------QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNAD 638 (1157)
T ss_pred HHHHHhhhHHHHHHHHHHH--CCCHHHHHHHHHh------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Confidence 2334456667 8999999999872 23456778889999999999999999999865 566 578
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCCcchHHHHHHHHHhCC
Q 040319 611 VWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWHNSELVREDMREKG 673 (812)
Q Consensus 611 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g 673 (812)
.+..+...+...|+.++|+..++++++..|+++..+..++.+|...|++++|.++++++....
T Consensus 639 a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 701 (1157)
T PRK11447 639 ARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQA 701 (1157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhC
Confidence 999999999999999999999999999999999999999999999999999999999986543
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.3e-20 Score=214.74 Aligned_cols=592 Identities=13% Similarity=0.024 Sum_probs=411.0
Q ss_pred ccCChhhHHHHHhcCCC---CChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHH
Q 040319 45 KLGHVADAYKIFYGLSS---PNVVSFTSLISGLAKLGREEEAIELFFRMRSEGIVPNEHSFVAILTACIRLLELELGFQI 121 (812)
Q Consensus 45 ~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~ 121 (812)
..|++++|...|+...+ .+...+..|...|...|++++|+..+++..+. .|+...|..++..+ ++.++|..+
T Consensus 56 ~~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~l--dP~n~~~~~~La~i---~~~~kA~~~ 130 (987)
T PRK09782 56 KNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKR--HPGDARLERSLAAI---PVEVKSVTT 130 (987)
T ss_pred hCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHHHHHh---ccChhHHHH
Confidence 44999999999987652 34567888999999999999999999998875 45555555544333 888899999
Q ss_pred HHHHHHhCCCCchHHHHHHHHH--------hhhcCCCHHHHHHHHhcCCCCC--cchHH-HHHHHHHcCCChhHHHHHHH
Q 040319 122 HALIVKMGCVDSVFVTNALMGL--------YGKFSFCLDYLLKLFDELPHKD--TVSWN-TVISSVVNEFEYEKAFELFR 190 (812)
Q Consensus 122 ~~~~~~~g~~~~~~~~~~li~~--------y~~~g~~~~~a~~~f~~~~~~~--~~~~~-~li~~~~~~g~~~~A~~l~~ 190 (812)
++.+.+... .+..++..+... |.+.+ ....+.+ .+...|+ ..... .+...|.+.|++++|++++.
T Consensus 131 ye~l~~~~P-~n~~~~~~la~~~~~~~~l~y~q~e-qAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~ 206 (987)
T PRK09782 131 VEELLAQQK-ACDAVPTLRCRSEVGQNALRLAQLP-VARAQLN--DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYN 206 (987)
T ss_pred HHHHHHhCC-CChhHHHHHHHHhhccchhhhhhHH-HHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence 999988753 233344444443 77766 6666666 3333333 33334 44889999999999999999
Q ss_pred HhHhcCCCCCCcch-HHHHHHHHhc-CCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC---
Q 040319 191 DMKRDNGFTVDYFT-ISTLLTACTG-CFVLMEGRAVHAHAIRIGLGANLSVNNALIGFYTKCGRVKDVVALLERMPV--- 265 (812)
Q Consensus 191 ~m~~~~g~~pd~~t-~~~ll~~~~~-~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~--- 265 (812)
++ .+.+ |.... ...+-.++.. .++ +.+..++.. .+..+..+...+.+.|.+.|+.++|.+++++++.
T Consensus 207 ~L-~k~~--pl~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~ 278 (987)
T PRK09782 207 EA-RQQN--TLSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFT 278 (987)
T ss_pred HH-HhcC--CCCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCccccc
Confidence 99 5543 33333 4445556655 355 666666442 3447889999999999999999999999998852
Q ss_pred --CcchhH------------------------------HHHHHHHHhhCChhHHHHHhccCCCCCcccHHHHHH--HHHh
Q 040319 266 --MDIITL------------------------------TEIIIAYMEFGYVDLAVEIFDKMPEKNSVSYNALLA--GYCK 311 (812)
Q Consensus 266 --~~~~~~------------------------------~~li~~~~~~g~~~~A~~~f~~m~~~d~~~~~~li~--~~~~ 311 (812)
++..+| -.++..+.+.++++.|.++.. ....+. . ..+. +...
T Consensus 279 ~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~--~~~r~~~~~~ 354 (987)
T PRK09782 279 TDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLA-TLPANE-M--LEERYAVSVA 354 (987)
T ss_pred CCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhc-CCCcch-H--HHHHHhhccc
Confidence 211111 112556677778887777644 222222 1 2222 2223
Q ss_pred CCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHhccchhhhhHHHHHhhHHHh-c-CCCchhHHHHHHHHHHhcCC---HH
Q 040319 312 NGKAMEALGLFVKLLEEGLVLTEFTLTSVVNACGLIMEAKLSEQIHGFVMKF-G-LGSNDCIEAALLDMLTRCGR---MA 386 (812)
Q Consensus 312 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~-g-~~~~~~~~~~Li~~y~~~g~---~~ 386 (812)
.+...++...++.|.+.... +....--+---....|+.++|.+++...... + -..+....+-|+..|.+.+. ..
T Consensus 355 ~~~~~~~~~~~~~~y~~~~~-~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 433 (987)
T PRK09782 355 TRNKAEALRLARLLYQQEPA-NLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPA 433 (987)
T ss_pred cCchhHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchH
Confidence 36667777777777665211 1111111112234567888899888887662 1 22356667788888888876 23
Q ss_pred HHHHH-------------------------HhcCCCC-CC--ceeeeHHHHHHHHHcCChhhHHHHHHHhcccCCCCCCh
Q 040319 387 DAEKM-------------------------FYRWPTD-RD--DSIIWTSMICGYARSGKPEHAILLFHQSQSEATVVPDE 438 (812)
Q Consensus 387 ~A~~~-------------------------f~~~~~~-~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~ 438 (812)
.+..+ +...... ++ +...|..+...+.. +++++|+..|.+... ..|+.
T Consensus 434 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~---~~Pd~ 509 (987)
T PRK09782 434 KVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQ---RQPDA 509 (987)
T ss_pred HHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHH---hCCch
Confidence 33222 1111111 22 35566777777766 788889998887776 45776
Q ss_pred hhHHHHHHHhcCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHhhhcCCHHHHHHHHccCCCCChhHHHHH---HHHHH
Q 040319 439 IALTSVLGVCGTLGFHEMGKQIHSYALKTGFSSDLGVANSMVSMYFKCCNMSNAIKAFNKMPSHDIVSWNGL---IAGHL 515 (812)
Q Consensus 439 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~l---i~~~~ 515 (812)
.....+..++...|+++.|...+..+... +|+...+..+...+.+.|+.++|...|+...+.++..++.. ...+.
T Consensus 510 ~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~ 587 (987)
T PRK09782 510 WQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRY 587 (987)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 55444455556889999999998887653 34444556677888899999999999987765333223332 23333
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCC-cchHHHHHHHHhhcCChH
Q 040319 516 LHRQGDEALAVWSSMEKASIKPDAITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPT-SEHYASLVSVLGYWGFLE 594 (812)
Q Consensus 516 ~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g~~~ 594 (812)
..|++++|+..|++.++ ..|+...+..+..++.. .|+.++|...|+...+ +.|+ ...+..+..++...|+++
T Consensus 588 ~~Gr~~eAl~~~~~AL~--l~P~~~a~~~LA~~l~~--lG~~deA~~~l~~AL~---l~Pd~~~a~~nLG~aL~~~G~~e 660 (987)
T PRK09782 588 IPGQPELALNDLTRSLN--IAPSANAYVARATIYRQ--RHNVPAAVSDLRAALE---LEPNNSNYQAALGYALWDSGDIA 660 (987)
T ss_pred hCCCHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHH
Confidence 45999999999999998 77887788888888888 9999999999998876 4565 678888888999999999
Q ss_pred HHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCCcchHHHHHHHHHh
Q 040319 595 EAEETINNMP-FQP-KVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWHNSELVREDMRE 671 (812)
Q Consensus 595 ~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 671 (812)
+|++.+++.. ..| +...+..+..++...|+++.|+..++++++++|+++......++++.+..+++.|.+-+++.-.
T Consensus 661 eAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~ 739 (987)
T PRK09782 661 QSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWT 739 (987)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhh
Confidence 9999998854 566 5778889999999999999999999999999999999999999999999999998887766533
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.8e-19 Score=205.19 Aligned_cols=576 Identities=10% Similarity=-0.030 Sum_probs=402.4
Q ss_pred hHHHHHHHHH--hcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchHHHHHHHHH
Q 040319 66 SFTSLISGLA--KLGREEEAIELFFRMRSEGIVPNEHSFVAILTACIRLLELELGFQIHALIVKMGCVDSVFVTNALMGL 143 (812)
Q Consensus 66 ~~~~li~~~~--~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 143 (812)
++..+..+.. ..|++++|+..|++..+.. +-+..++..+.+.+...|+.++|....+..++... .|...+..| ..
T Consensus 44 ~~~~f~~a~~~~~~Gd~~~A~~~l~~Al~~d-P~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP-~n~~~~~~L-a~ 120 (987)
T PRK09782 44 IYPRLDKALKAQKNNDEATAIREFEYIHQQV-PDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHP-GDARLERSL-AA 120 (987)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc-ccHHHHHHH-HH
Confidence 3444555443 3499999999999998864 23467788899999999999999999999988742 344444444 33
Q ss_pred hhhcCCCHHHHHHHHhcCCC--C-CcchHHHHHHH--------HHcCCChhHHHHHHHHhHhcCCCCCCcchHHHH-HHH
Q 040319 144 YGKFSFCLDYLLKLFDELPH--K-DTVSWNTVISS--------VVNEFEYEKAFELFRDMKRDNGFTVDYFTISTL-LTA 211 (812)
Q Consensus 144 y~~~g~~~~~a~~~f~~~~~--~-~~~~~~~li~~--------~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~l-l~~ 211 (812)
+ + ..+.|..+++++.. | +...+..+... |.+.+...++++ . +.....|+..+.... .+.
T Consensus 121 i---~-~~~kA~~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~----l-r~~~~~~~~~vL~L~~~rl 191 (987)
T PRK09782 121 I---P-VEVKSVTTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLN----D-ATFAASPEGKTLRTDLLQR 191 (987)
T ss_pred h---c-cChhHHHHHHHHHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHH----H-hhhCCCCCcHHHHHHHHHH
Confidence 3 6 77888888888763 3 34444444444 666655555555 3 443445556555555 889
Q ss_pred HhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh-cCChHHHHHHHhcCCCCcchhHHHHHHHHHhhCChhHHHHH
Q 040319 212 CTGCFVLMEGRAVHAHAIRIGLGANLSVNNALIGFYTK-CGRVKDVVALLERMPVMDIITLTEIIIAYMEFGYVDLAVEI 290 (812)
Q Consensus 212 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~-~g~~~~A~~l~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 290 (812)
+...++++.+..++..+.+.+ +.+..-...|-.+|.. .++ +.+..+++.....+...+..++..|.+.|+.++|.++
T Consensus 192 Y~~l~dw~~Ai~lL~~L~k~~-pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~ 269 (987)
T PRK09782 192 AIYLKQWSQADTLYNEARQQN-TLSAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHY 269 (987)
T ss_pred HHHHhCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 999999999999999999987 4445556777778888 477 8888887765567888999999999999999999999
Q ss_pred hccCCC-----CCcccHHH------------------------------HHHHHHhCCChHHHHHHHHHHHHcCCCCCHh
Q 040319 291 FDKMPE-----KNSVSYNA------------------------------LLAGYCKNGKAMEALGLFVKLLEEGLVLTEF 335 (812)
Q Consensus 291 f~~m~~-----~d~~~~~~------------------------------li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 335 (812)
+.+++. |+..+|-- ++..+.+.++++-+.++ ....|...
T Consensus 270 L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~ 343 (987)
T PRK09782 270 LIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKL------LATLPANE 343 (987)
T ss_pred HHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHH------hcCCCcch
Confidence 999864 22222222 23444455555533333 12344444
Q ss_pred HHHHHHHHhccchhhhhHHHHHhhHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCCce----eeeHHHHHH
Q 040319 336 TLTSVVNACGLIMEAKLSEQIHGFVMKFGLGSNDCIEAALLDMLTRCGRMADAEKMFYRWPTDRDDS----IIWTSMICG 411 (812)
Q Consensus 336 t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~----~~~~~li~~ 411 (812)
....-..+....+...++.+.+..+.+... -+....--+.-...+.|+.++|.++|+..-..+.+. ..-+-++..
T Consensus 344 ~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~-~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~ 422 (987)
T PRK09782 344 MLEERYAVSVATRNKAEALRLARLLYQQEP-ANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASL 422 (987)
T ss_pred HHHHHHhhccccCchhHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHH
Confidence 321111222233555566666666655421 133333334444578899999999998876323222 233456677
Q ss_pred HHHcCC---hhhHHHH----------------------HHHhcccCCCCCC---hhhHHHHHHHhcCccchHHHHHHHHH
Q 040319 412 YARSGK---PEHAILL----------------------FHQSQSEATVVPD---EIALTSVLGVCGTLGFHEMGKQIHSY 463 (812)
Q Consensus 412 ~~~~g~---~~~A~~~----------------------~~~m~~~~g~~p~---~~t~~~ll~a~~~~~~~~~a~~~~~~ 463 (812)
|...+. ..+++.+ ......-.+..|+ ...+..+-.++.. +..++|...+..
T Consensus 423 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~ 501 (987)
T PRK09782 423 LESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQ 501 (987)
T ss_pred HHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHH
Confidence 777665 3333333 1111111122233 3334444444444 788888887777
Q ss_pred HHHhCCCCchhHHHHHHHHhhhcCCHHHHHHHHccCCC--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH
Q 040319 464 ALKTGFSSDLGVANSMVSMYFKCCNMSNAIKAFNKMPS--HDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDAIT 541 (812)
Q Consensus 464 ~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t 541 (812)
..... |+......+...+...|++++|...|+++.. |+...+..+...+.+.|+.++|...|++.++ ..|+...
T Consensus 502 Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~--l~P~~~~ 577 (987)
T PRK09782 502 AEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQ--RGLGDNA 577 (987)
T ss_pred HHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCccHH
Confidence 66543 5544444455556789999999999987664 5556777888889999999999999999998 4566543
Q ss_pred H-HHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCCcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHH
Q 040319 542 F-VLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLEEAEETINNMP-FQP-KVSVWRALLDS 618 (812)
Q Consensus 542 ~-~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~ 618 (812)
. ..+...... .|++++|...|++..+ +.|+...|..+..++.+.|+.++|+..+++.. ..| +...+..+..+
T Consensus 578 l~~~La~~l~~--~Gr~~eAl~~~~~AL~---l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~a 652 (987)
T PRK09782 578 LYWWLHAQRYI--PGQPELALNDLTRSLN---IAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYA 652 (987)
T ss_pred HHHHHHHHHHh--CCCHHHHHHHHHHHHH---hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 3 333334445 6999999999999986 56888899999999999999999999999965 677 46677888888
Q ss_pred HHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCCcchHHHHHHHHHhC
Q 040319 619 CRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWHNSELVREDMREK 672 (812)
Q Consensus 619 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 672 (812)
+...|+.++|+..++++++++|+++..+..++.+|...|++++|...+++.-+.
T Consensus 653 L~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l 706 (987)
T PRK09782 653 LWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDD 706 (987)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999988543
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.5e-19 Score=181.27 Aligned_cols=452 Identities=13% Similarity=0.067 Sum_probs=307.1
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHhHhcCCCCCCc-chHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 040319 169 WNTVISSVVNEFEYEKAFELFRDMKRDNGFTVDY-FTISTLLTACTGCFVLMEGRAVHAHAIRIGLGANLSVNNALIGFY 247 (812)
Q Consensus 169 ~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 247 (812)
-..|..-..+.|++++|++--... -.. .|+. .+...+-..+.+..+.+...+--...++.. +.-..+|..+.+.+
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv-~~~--d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~ 126 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMV-GQE--DPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANIL 126 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHh-hcc--CCCcccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHH
Confidence 344556667788888888765544 221 1221 122222222333334443333222222221 23345566666666
Q ss_pred HhcCChHHHHHHHhcCCC---CcchhHHHHHHHHHhhCChhHHHHHhccCCCCCcccHHHHHHHHHhCCChHHHHHHHHH
Q 040319 248 TKCGRVKDVVALLERMPV---MDIITLTEIIIAYMEFGYVDLAVEIFDKMPEKNSVSYNALLAGYCKNGKAMEALGLFVK 324 (812)
Q Consensus 248 ~~~g~~~~A~~l~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~ 324 (812)
-..|++++|.++++.+.+ ..+..|..+..++...|+.+.|. ..|.+
T Consensus 127 kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~-------------------------------~~~~~ 175 (966)
T KOG4626|consen 127 KERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAV-------------------------------QCFFE 175 (966)
T ss_pred HHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccH-------------------------------HHHHH
Confidence 666666666665555432 13344444444454555544444 44444
Q ss_pred HHHcCCCCCHhHHHHHHHHh-ccchhhhhHHHHHhhHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCC-ce
Q 040319 325 LLEEGLVLTEFTLTSVVNAC-GLIMEAKLSEQIHGFVMKFGLGSNDCIEAALLDMLTRCGRMADAEKMFYRWPTDRD-DS 402 (812)
Q Consensus 325 m~~~g~~p~~~t~~~ll~a~-~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~-~~ 402 (812)
.++ +.|+.+...+-+.-+ ...|.++++...+-.+++... .=..+|+.|...+-..|++..|...|++...-.| -.
T Consensus 176 alq--lnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp-~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~ 252 (966)
T KOG4626|consen 176 ALQ--LNPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQP-CFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFL 252 (966)
T ss_pred HHh--cCcchhhhhcchhHHHHhhcccchhHHHHHHHHhhCC-ceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcch
Confidence 443 233333222222111 112334444444433333211 1124456666677778888888888877653333 24
Q ss_pred eeeHHHHHHHHHcCChhhHHHHHHHhcccCCCCCChh-hHHHHHHHhcCccchHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 040319 403 IIWTSMICGYARSGKPEHAILLFHQSQSEATVVPDEI-ALTSVLGVCGTLGFHEMGKQIHSYALKTGFSSDLGVANSMVS 481 (812)
Q Consensus 403 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~-t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~ 481 (812)
..|-.|-..|...+.+++|+..|.+... ..|+.. .+..+...|-..|.++.|..-+++.+... +.-...|+.|..
T Consensus 253 dAYiNLGnV~ke~~~~d~Avs~Y~rAl~---lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~Nlan 328 (966)
T KOG4626|consen 253 DAYINLGNVYKEARIFDRAVSCYLRALN---LRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLAN 328 (966)
T ss_pred HHHhhHHHHHHHHhcchHHHHHHHHHHh---cCCcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHH
Confidence 4677777888888888888888877765 666643 45555566777888888888888887643 223567889999
Q ss_pred HhhhcCCHHHHHHHHccCCC--C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcCCCCchH
Q 040319 482 MYFKCCNMSNAIKAFNKMPS--H-DIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDA-ITFVLIISAYRYTNLNLV 557 (812)
Q Consensus 482 ~y~k~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~~~g~~ 557 (812)
++...|++.+|.+.+++... | -..+.+.|...|...|..++|..+|+...+ +.|.- ..++.|...|-+ .|++
T Consensus 329 ALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kq--qgnl 404 (966)
T KOG4626|consen 329 ALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQ--QGNL 404 (966)
T ss_pred HHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHh--cccH
Confidence 99999999999999988765 3 356888999999999999999999999999 88987 678889889988 9999
Q ss_pred HHHHHHHHHhhhhcCccCC-cchHHHHHHHHhhcCChHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 040319 558 DSCRKLFLSMKTIYNIEPT-SEHYASLVSVLGYWGFLEEAEETINNMP-FQPK-VSVWRALLDSCRIRLNTTIGKRVAKH 634 (812)
Q Consensus 558 ~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~ 634 (812)
++|+..+++..+ |.|+ .+.|+.|...|-..|+.+.|.+.+.+.. +.|. +-..+.|...++..|++.+|+..++.
T Consensus 405 ~~Ai~~Ykealr---I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~ 481 (966)
T KOG4626|consen 405 DDAIMCYKEALR---IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRT 481 (966)
T ss_pred HHHHHHHHHHHh---cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHH
Confidence 999999999876 8898 7899999999999999999999998854 7775 56888999999999999999999999
Q ss_pred HHccCCCCCchHHHHHhhhhhCCCcchHHHHHHHH
Q 040319 635 ILAMEPQDPATYILVSNLYSSSGRWHNSELVREDM 669 (812)
Q Consensus 635 ~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 669 (812)
+++++|+-+.+|-.+...+.-..+|.+-.+.++++
T Consensus 482 aLklkPDfpdA~cNllh~lq~vcdw~D~d~~~~kl 516 (966)
T KOG4626|consen 482 ALKLKPDFPDAYCNLLHCLQIVCDWTDYDKRMKKL 516 (966)
T ss_pred HHccCCCCchhhhHHHHHHHHHhcccchHHHHHHH
Confidence 99999999999999999888888888844444333
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.9e-18 Score=173.78 Aligned_cols=416 Identities=13% Similarity=0.132 Sum_probs=328.0
Q ss_pred HHHHHHHHhcCChHHHHHHHhcCCCCcc---hhHHHHHHHHHhhCChhHHHHHhccCCC---CCcccHHHHHHHHHhCCC
Q 040319 241 NALIGFYTKCGRVKDVVALLERMPVMDI---ITLTEIIIAYMEFGYVDLAVEIFDKMPE---KNSVSYNALLAGYCKNGK 314 (812)
Q Consensus 241 ~~li~~~~~~g~~~~A~~l~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~ 314 (812)
..|..-..+.|++++|++.-..+-..|. ...-.+-.++.+..+.+....--....+ .-..+|..+...+-..|+
T Consensus 52 l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg~ 131 (966)
T KOG4626|consen 52 LELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKERGQ 131 (966)
T ss_pred HHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHhch
Confidence 3455556677888888776555533222 1222222344444444444332222222 234578889999999999
Q ss_pred hHHHHHHHHHHHHcCCCCC-HhHHHHHHHHhccchhhhhHHHHHhhHHHhcCCCchhH-HHHHHHHHHhcCCHHHHHHHH
Q 040319 315 AMEALGLFVKLLEEGLVLT-EFTLTSVVNACGLIMEAKLSEQIHGFVMKFGLGSNDCI-EAALLDMLTRCGRMADAEKMF 392 (812)
Q Consensus 315 ~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~-~~~Li~~y~~~g~~~~A~~~f 392 (812)
.++|+.+|+.|++. +|+ ...|..+-.++...|+.+.+.+.+...++.. |+... .+-+-......|++++|...+
T Consensus 132 ~~~al~~y~~aiel--~p~fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~lgnLlka~Grl~ea~~cY 207 (966)
T KOG4626|consen 132 LQDALALYRAAIEL--KPKFIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSDLGNLLKAEGRLEEAKACY 207 (966)
T ss_pred HHHHHHHHHHHHhc--CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcchhHHHHhhcccchhHHHH
Confidence 99999999999985 453 4578888888899999999999998887753 44333 233455566789999998888
Q ss_pred hcCCCC-CCceeeeHHHHHHHHHcCChhhHHHHHHHhcccCCCCCChh-hHHHHHHHhcCccchHHHHHHHHHHHHhCCC
Q 040319 393 YRWPTD-RDDSIIWTSMICGYARSGKPEHAILLFHQSQSEATVVPDEI-ALTSVLGVCGTLGFHEMGKQIHSYALKTGFS 470 (812)
Q Consensus 393 ~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~-t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~ 470 (812)
.+.... +.-.+.|+.|...+-..|+...|++.|++... +.|+-. .|..+-..+...+.++.|...+.++.... +
T Consensus 208 lkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvk---ldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-p 283 (966)
T KOG4626|consen 208 LKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVK---LDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR-P 283 (966)
T ss_pred HHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhc---CCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-C
Confidence 664423 34478899999999999999999999999987 777643 56666667777777777777777666532 2
Q ss_pred CchhHHHHHHHHhhhcCCHHHHHHHHccCCC--CC-hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHH
Q 040319 471 SDLGVANSMVSMYFKCCNMSNAIKAFNKMPS--HD-IVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDA-ITFVLII 546 (812)
Q Consensus 471 ~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll 546 (812)
....++..|...|-..|.++-|...+++..+ |+ ...||.|..++...|+..+|...|.+.+. +.|+. .+.+.|.
T Consensus 284 n~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~--l~p~hadam~NLg 361 (966)
T KOG4626|consen 284 NHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALR--LCPNHADAMNNLG 361 (966)
T ss_pred cchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHH--hCCccHHHHHHHH
Confidence 3566777888899999999999999998876 44 57999999999999999999999999999 88887 6788899
Q ss_pred HHhcCCCCchHHHHHHHHHHhhhhcCccCC-cchHHHHHHHHhhcCChHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcC
Q 040319 547 SAYRYTNLNLVDSCRKLFLSMKTIYNIEPT-SEHYASLVSVLGYWGFLEEAEETINNMP-FQPK-VSVWRALLDSCRIRL 623 (812)
Q Consensus 547 ~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p~-~~~~~~ll~~~~~~~ 623 (812)
..+.. .|.+++|..+|....+ +.|. ....+.|...|-..|++++|+.-+++.. ++|+ +..++.+.+.+...|
T Consensus 362 ni~~E--~~~~e~A~~ly~~al~---v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g 436 (966)
T KOG4626|consen 362 NIYRE--QGKIEEATRLYLKALE---VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMG 436 (966)
T ss_pred HHHHH--hccchHHHHHHHHHHh---hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhh
Confidence 99999 9999999999998876 5676 6788999999999999999999999865 8896 568999999999999
Q ss_pred CHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCCcchHHHHHHHHHh
Q 040319 624 NTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWHNSELVREDMRE 671 (812)
Q Consensus 624 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 671 (812)
++..|.+.+.+++.++|.-+.++..|+.+|-.+|+..+|+.-++....
T Consensus 437 ~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLk 484 (966)
T KOG4626|consen 437 DVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALK 484 (966)
T ss_pred hHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc
Confidence 999999999999999999999999999999999999999998887744
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.5e-15 Score=162.64 Aligned_cols=577 Identities=13% Similarity=0.077 Sum_probs=320.6
Q ss_pred hhhHHHHHhcCCC--C-ChhhHHHHHHH--HHhcCChhHHHHHHHHHHHCC--CCCChhhHHHHHHHHHhcCChHHHHHH
Q 040319 49 VADAYKIFYGLSS--P-NVVSFTSLISG--LAKLGREEEAIELFFRMRSEG--IVPNEHSFVAILTACIRLLELELGFQI 121 (812)
Q Consensus 49 ~~~A~~~f~~~~~--~-~~~~~~~li~~--~~~~g~~~~a~~~~~~m~~~g--~~p~~~~~~~ll~~~~~~~~~~~a~~~ 121 (812)
.+.|...|....+ | |+-. .|..+ ....+++..|+.+|...+... .+||+. ..+-.++.+.++.+.|...
T Consensus 146 ~~~A~a~F~~Vl~~sp~Nil~--LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~r--Igig~Cf~kl~~~~~a~~a 221 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSPDNILA--LLGKARIAYNKKDYRGALKYYKKALRINPACKADVR--IGIGHCFWKLGMSEKALLA 221 (1018)
T ss_pred HHHHHHHHHHHHhhCCcchHH--HHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCcc--chhhhHHHhccchhhHHHH
Confidence 4778777776642 3 3322 22333 335678889999998866543 344443 2334667788888888877
Q ss_pred HHHHHHhCCCCchHHHHHHHHHhh---hcC--CCHHHHHHHHhcCC---CCCcchHHHHHHHHHcCCChhHHHHHHHHhH
Q 040319 122 HALIVKMGCVDSVFVTNALMGLYG---KFS--FCLDYLLKLFDELP---HKDTVSWNTVISSVVNEFEYEKAFELFRDMK 193 (812)
Q Consensus 122 ~~~~~~~g~~~~~~~~~~li~~y~---~~g--~~~~~a~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 193 (812)
+....+.. | ...++++..+. ... ..+..+..++...- ..|++..|.|...|.-.|+++.++.+...+.
T Consensus 222 ~~ralqLd--p--~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai 297 (1018)
T KOG2002|consen 222 FERALQLD--P--TCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAI 297 (1018)
T ss_pred HHHHHhcC--h--hhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHH
Confidence 77776543 3 33333333221 111 12333444443322 3577888888888888888888888888873
Q ss_pred hcCCCCC-CcchHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCC---CCcch
Q 040319 194 RDNGFTV-DYFTISTLLTACTGCFVLMEGRAVHAHAIRIGLGANLSVNNALIGFYTKCGRVKDVVALLERMP---VMDII 269 (812)
Q Consensus 194 ~~~g~~p-d~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~---~~~~~ 269 (812)
...-..+ -...|-.+-+++-..|+++.|...+-+..+..-..-+..+-.|..+|.+.|+++.+...|+.+. +.+..
T Consensus 298 ~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~e 377 (1018)
T KOG2002|consen 298 KNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYE 377 (1018)
T ss_pred HhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHH
Confidence 3221111 1234667777788888888888888777665322223334456788888888888888887764 22345
Q ss_pred hHHHHHHHHHhhC----ChhHHHHHhccCCCCC---cccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHH
Q 040319 270 TLTEIIIAYMEFG----YVDLAVEIFDKMPEKN---SVSYNALLAGYCKNGKAMEALGLFVKLLEEGLVLTEFTLTSVVN 342 (812)
Q Consensus 270 ~~~~li~~~~~~g----~~~~A~~~f~~m~~~d---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 342 (812)
+...+...|...+ ..+.|..+..+..++. ...|-.+...+-+. +...++..|.....
T Consensus 378 tm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~-d~~~sL~~~~~A~d--------------- 441 (1018)
T KOG2002|consen 378 TMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQT-DPWASLDAYGNALD--------------- 441 (1018)
T ss_pred HHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhc-ChHHHHHHHHHHHH---------------
Confidence 5555555555553 4566666666555433 23344333333333 22222444433321
Q ss_pred HhccchhhhhHHHHHhhHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCC-----CCcee------eeHHHHHH
Q 040319 343 ACGLIMEAKLSEQIHGFVMKFGLGSNDCIEAALLDMLTRCGRMADAEKMFYRWPTD-----RDDSI------IWTSMICG 411 (812)
Q Consensus 343 a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~-----~~~~~------~~~~li~~ 411 (812)
.+...+-.+.+.+.|.+...+...|++++|...|++.... .+|.. +-..+...
T Consensus 442 ----------------~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl 505 (1018)
T KOG2002|consen 442 ----------------ILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARL 505 (1018)
T ss_pred ----------------HHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHH
Confidence 2223333455555666666666666666666666554311 01110 11123334
Q ss_pred HHHcCChhhHHHHHHHhcccCCCCCChhhHHHHHHHh-cCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHhhhcCCHH
Q 040319 412 YARSGKPEHAILLFHQSQSEATVVPDEIALTSVLGVC-GTLGFHEMGKQIHSYALKTGFSSDLGVANSMVSMYFKCCNMS 490 (812)
Q Consensus 412 ~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~a~-~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~ 490 (812)
+-..++++.|.+.|..+.. ..|.-++--.-+.+. ...+.+.++...+..+.+.. ..++.+++.+.+.|.+...+.
T Consensus 506 ~E~l~~~~~A~e~Yk~Ilk---ehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~ 581 (1018)
T KOG2002|consen 506 LEELHDTEVAEEMYKSILK---EHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWK 581 (1018)
T ss_pred HHhhhhhhHHHHHHHHHHH---HCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhc
Confidence 4445566666666666665 345444322222111 22244555555555555422 234445555555666666666
Q ss_pred HHHHHHccCCC-----CChhHHHHHHHHHHh------------cCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcCC
Q 040319 491 NAIKAFNKMPS-----HDIVSWNGLIAGHLL------------HRQGDEALAVWSSMEKASIKPDA-ITFVLIISAYRYT 552 (812)
Q Consensus 491 ~A~~~f~~~~~-----~~~~~~~~li~~~~~------------~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~ 552 (812)
.|..-|..+.+ +|..+.-+|.+.|.+ .+..++|+++|.+.++ ..|-. ..-+.+...+++
T Consensus 582 ~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~--~dpkN~yAANGIgiVLA~- 658 (1018)
T KOG2002|consen 582 PAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLR--NDPKNMYAANGIGIVLAE- 658 (1018)
T ss_pred ccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHh--cCcchhhhccchhhhhhh-
Confidence 66654333322 344444444443332 2344566666666666 44433 444445545555
Q ss_pred CCchHHHHHHHHHHhhhhcCccCCcchHHHHHHHHhhcCChHHHHHHHHhCC---C-CCCHHHHHHHHHHHHhcCCHHHH
Q 040319 553 NLNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLEEAEETINNMP---F-QPKVSVWRALLDSCRIRLNTTIG 628 (812)
Q Consensus 553 ~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~---~-~p~~~~~~~ll~~~~~~~~~~~a 628 (812)
.|.+.+|..+|.+..+.. .....+|-.+..+|...|++..|+++|+... . +.+.-+...|..++...|.+.+|
T Consensus 659 -kg~~~~A~dIFsqVrEa~--~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~ea 735 (1018)
T KOG2002|consen 659 -KGRFSEARDIFSQVREAT--SDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEA 735 (1018)
T ss_pred -ccCchHHHHHHHHHHHHH--hhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHH
Confidence 667777777777666522 2334566666677777777777777766532 1 23455666666666667777777
Q ss_pred HHHHHHHHccCCCCCchHHHHHh-------------------hhhhCCCcchHHHHHHHHHhCCCC
Q 040319 629 KRVAKHILAMEPQDPATYILVSN-------------------LYSSSGRWHNSELVREDMREKGFR 675 (812)
Q Consensus 629 ~~~~~~~~~~~p~~~~~~~~l~~-------------------~y~~~g~~~~a~~~~~~m~~~g~~ 675 (812)
...+..++.+.|.|+..-+.++- +....+..++|.++|..|...+-+
T Consensus 736 k~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr~~k~t~eev~~a~~~le~a~r~F~~ls~~~d~ 801 (1018)
T KOG2002|consen 736 KEALLKARHLAPSNTSVKFNLALVLKKLAESILRLEKRTLEEVLEAVKELEEARRLFTELSKNGDK 801 (1018)
T ss_pred HHHHHHHHHhCCccchHHhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 77777777777776665554443 344455678888888888765544
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.4e-16 Score=178.81 Aligned_cols=413 Identities=13% Similarity=-0.001 Sum_probs=260.6
Q ss_pred HHHHHhcCChHHHHHHHhcCC--CCcchhHHHHHHHHHhhCChhHHHHHhccCCC---CCcccHHHHHHHHHhCCChHHH
Q 040319 244 IGFYTKCGRVKDVVALLERMP--VMDIITLTEIIIAYMEFGYVDLAVEIFDKMPE---KNSVSYNALLAGYCKNGKAMEA 318 (812)
Q Consensus 244 i~~~~~~g~~~~A~~l~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~A 318 (812)
...|.+.|+++.|...|++.. .|+...|..+..+|.+.|++++|++.+++..+ .+...|..+..+|...|++++|
T Consensus 134 G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~eA 213 (615)
T TIGR00990 134 GNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADA 213 (615)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 344555555555555555542 33444455555555555555555556655443 2344666677777777787777
Q ss_pred HHHHHHHHHcCCCCCHhHHHHHHHHhccchhhhhHHHHHhhHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCC
Q 040319 319 LGLFVKLLEEGLVLTEFTLTSVVNACGLIMEAKLSEQIHGFVMKFGLGSNDCIEAALLDMLTRCGRMADAEKMFYRWPTD 398 (812)
Q Consensus 319 ~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~ 398 (812)
+.-|......+-..+ .....++..... ..+........+.. +.+......+ ..|........+..-++.....
T Consensus 214 ~~~~~~~~~~~~~~~-~~~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 286 (615)
T TIGR00990 214 LLDLTASCIIDGFRN-EQSAQAVERLLK----KFAESKAKEILETK-PENLPSVTFV-GNYLQSFRPKPRPAGLEDSNEL 286 (615)
T ss_pred HHHHHHHHHhCCCcc-HHHHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHH-HHHHHHccCCcchhhhhccccc
Confidence 777765544321111 111111111111 11111111111111 1111111111 1222221111111112111101
Q ss_pred CC-ceeeeHHHHHHH---HHcCChhhHHHHHHHhcccCCCCCCh-hhHHHHHHHhcCccchHHHHHHHHHHHHhCCCCch
Q 040319 399 RD-DSIIWTSMICGY---ARSGKPEHAILLFHQSQSEATVVPDE-IALTSVLGVCGTLGFHEMGKQIHSYALKTGFSSDL 473 (812)
Q Consensus 399 ~~-~~~~~~~li~~~---~~~g~~~~A~~~~~~m~~~~g~~p~~-~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~ 473 (812)
.+ ....+..+...+ ...+++++|++.|++........|+. ..+..+...+...|+++.|...+..+++.. +...
T Consensus 287 ~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~ 365 (615)
T TIGR00990 287 DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVT 365 (615)
T ss_pred ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcH
Confidence 11 011111111111 22467889999999888622234543 345555566778899999999999888753 2245
Q ss_pred hHHHHHHHHhhhcCCHHHHHHHHccCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHh
Q 040319 474 GVANSMVSMYFKCCNMSNAIKAFNKMPS---HDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDA-ITFVLIISAY 549 (812)
Q Consensus 474 ~~~~~Li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~ 549 (812)
..+..+...|...|++++|...|++..+ .+...|..+...|...|++++|+..|++.++ +.|+. ..+..+..++
T Consensus 366 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~--l~P~~~~~~~~la~~~ 443 (615)
T TIGR00990 366 QSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSID--LDPDFIFSHIQLGVTQ 443 (615)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCccCHHHHHHHHHHH
Confidence 6778888999999999999999987654 4578899999999999999999999999998 67875 4555566677
Q ss_pred cCCCCchHHHHHHHHHHhhhhcCccCC-cchHHHHHHHHhhcCChHHHHHHHHhCC-CCCCH-H-------HHHHHHHHH
Q 040319 550 RYTNLNLVDSCRKLFLSMKTIYNIEPT-SEHYASLVSVLGYWGFLEEAEETINNMP-FQPKV-S-------VWRALLDSC 619 (812)
Q Consensus 550 ~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p~~-~-------~~~~ll~~~ 619 (812)
.. .|++++|...|+...+ ..|+ ...|..+..++...|++++|++.+++.. +.|+. . .++..+..+
T Consensus 444 ~~--~g~~~eA~~~~~~al~---~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~ 518 (615)
T TIGR00990 444 YK--EGSIASSMATFRRCKK---NFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALF 518 (615)
T ss_pred HH--CCCHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHH
Confidence 77 8999999999999876 2354 7889999999999999999999998844 44431 1 122222234
Q ss_pred HhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCCcchHHHHHHHHHh
Q 040319 620 RIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWHNSELVREDMRE 671 (812)
Q Consensus 620 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 671 (812)
...|++++|+..++++++++|++...+..++.+|...|++++|.+.+++..+
T Consensus 519 ~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~ 570 (615)
T TIGR00990 519 QWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAE 570 (615)
T ss_pred HHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 4569999999999999999999999999999999999999999999988754
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.4e-17 Score=180.68 Aligned_cols=292 Identities=14% Similarity=0.120 Sum_probs=219.6
Q ss_pred HHHhcCCHHHHHHHHhcCCCC-CCceeeeHHHHHHHHHcCChhhHHHHHHHhcccCCCCCC---hhhHHHHHHHhcCccc
Q 040319 378 MLTRCGRMADAEKMFYRWPTD-RDDSIIWTSMICGYARSGKPEHAILLFHQSQSEATVVPD---EIALTSVLGVCGTLGF 453 (812)
Q Consensus 378 ~y~~~g~~~~A~~~f~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~---~~t~~~ll~a~~~~~~ 453 (812)
.+...|++++|...|+++... +++..+|..+...+...|++++|+.+++.+.. .+..++ ...+..+...+...|+
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~-~~~~~~~~~~~~~~~La~~~~~~g~ 122 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLS-RPDLTREQRLLALQELGQDYLKAGL 122 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 345667777777777776533 23344677777777778888888888777765 322221 1345566677777788
Q ss_pred hHHHHHHHHHHHHhCCCCchhHHHHHHHHhhhcCCHHHHHHHHccCCC--CC------hhHHHHHHHHHHhcCChHHHHH
Q 040319 454 HEMGKQIHSYALKTGFSSDLGVANSMVSMYFKCCNMSNAIKAFNKMPS--HD------IVSWNGLIAGHLLHRQGDEALA 525 (812)
Q Consensus 454 ~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~--~~------~~~~~~li~~~~~~g~~~~A~~ 525 (812)
++.|..++..+.+.. +.+..+++.++.+|.+.|++++|.+.|+.+.+ |+ ...|..+...+...|++++|++
T Consensus 123 ~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 201 (389)
T PRK11788 123 LDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARA 201 (389)
T ss_pred HHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 888888877777642 34567788888888888888888888887754 22 1245667778888999999999
Q ss_pred HHHHHHHCCCCCCH-HHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCC--cchHHHHHHHHhhcCChHHHHHHHHh
Q 040319 526 VWSSMEKASIKPDA-ITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPT--SEHYASLVSVLGYWGFLEEAEETINN 602 (812)
Q Consensus 526 l~~~m~~~g~~pd~-~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~y~~li~~l~~~g~~~~A~~~~~~ 602 (812)
.|+++.+ ..|+. ..+..+...+.. .|++++|.++|+++.+. .|+ ...+..++.+|.+.|++++|.+.+++
T Consensus 202 ~~~~al~--~~p~~~~~~~~la~~~~~--~g~~~~A~~~~~~~~~~---~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~ 274 (389)
T PRK11788 202 LLKKALA--ADPQCVRASILLGDLALA--QGDYAAAIEALERVEEQ---DPEYLSEVLPKLMECYQALGDEAEGLEFLRR 274 (389)
T ss_pred HHHHHHh--HCcCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHH---ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999988 45664 456666677777 89999999999998762 343 45678899999999999999999998
Q ss_pred CC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhh---CCCcchHHHHHHHHHhCCCCCCC
Q 040319 603 MP-FQPKVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSS---SGRWHNSELVREDMREKGFRKHP 678 (812)
Q Consensus 603 m~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~---~g~~~~a~~~~~~m~~~g~~~~~ 678 (812)
+. ..|+...+..+...+...|+.+.|...++++++..|+++. +..+...+.. .|+.+++..++++|.++++++.|
T Consensus 275 ~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~-~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p 353 (389)
T PRK11788 275 ALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRG-FHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKP 353 (389)
T ss_pred HHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHH-HHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCC
Confidence 65 6777777788888899999999999999999999998764 4444444432 56999999999999999998888
Q ss_pred c
Q 040319 679 S 679 (812)
Q Consensus 679 ~ 679 (812)
+
T Consensus 354 ~ 354 (389)
T PRK11788 354 R 354 (389)
T ss_pred C
Confidence 7
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.3e-17 Score=178.86 Aligned_cols=298 Identities=13% Similarity=0.056 Sum_probs=185.2
Q ss_pred HHHHHcCCChhHHHHHHHHhHhcCCCCCCc-chHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCc---hhHHHHHHHHHH
Q 040319 173 ISSVVNEFEYEKAFELFRDMKRDNGFTVDY-FTISTLLTACTGCFVLMEGRAVHAHAIRIGLGAN---LSVNNALIGFYT 248 (812)
Q Consensus 173 i~~~~~~g~~~~A~~l~~~m~~~~g~~pd~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~li~~~~ 248 (812)
...+...|++++|+..|+++ ... .|+. .++..+...+...|+++.|..+++.+++.+..++ ..++..+...|.
T Consensus 42 g~~~~~~~~~~~A~~~~~~a-l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~ 118 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEM-LKV--DPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYL 118 (389)
T ss_pred HHHHHhcCChHHHHHHHHHH-Hhc--CcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence 33455667777777777777 332 3332 3455555556666666666666666555322111 123444444444
Q ss_pred hcCChHHHHHHHhcCCCCcchhHHHHHHHHHhhCChhHHHHHhccCCC---CCcccHHHHHHHHHhCCChHHHHHHHHHH
Q 040319 249 KCGRVKDVVALLERMPVMDIITLTEIIIAYMEFGYVDLAVEIFDKMPE---KNSVSYNALLAGYCKNGKAMEALGLFVKL 325 (812)
Q Consensus 249 ~~g~~~~A~~l~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~A~~l~~~m 325 (812)
+.|++++|.. +|+++.+ .+..+++.++..+.+.|++++|.+.|+.+
T Consensus 119 ~~g~~~~A~~-------------------------------~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 167 (389)
T PRK11788 119 KAGLLDRAEE-------------------------------LFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERL 167 (389)
T ss_pred HCCCHHHHHH-------------------------------HHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHH
Confidence 4455544444 5555543 34556777777788888888888888877
Q ss_pred HHcCCCCCHhHHHHHHHHhccchhhhhHHHHHhhHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCC-CCceee
Q 040319 326 LEEGLVLTEFTLTSVVNACGLIMEAKLSEQIHGFVMKFGLGSNDCIEAALLDMLTRCGRMADAEKMFYRWPTD-RDDSII 404 (812)
Q Consensus 326 ~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~-~~~~~~ 404 (812)
.+.+..++.... ...+..+...|.+.|++++|.+.|+++... +++...
T Consensus 168 ~~~~~~~~~~~~-------------------------------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 216 (389)
T PRK11788 168 EKLGGDSLRVEI-------------------------------AHFYCELAQQALARGDLDAARALLKKALAADPQCVRA 216 (389)
T ss_pred HHhcCCcchHHH-------------------------------HHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHH
Confidence 765432221100 112334566677788888888888776522 233556
Q ss_pred eHHHHHHHHHcCChhhHHHHHHHhcccCCCCCC--hhhHHHHHHHhcCccchHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 040319 405 WTSMICGYARSGKPEHAILLFHQSQSEATVVPD--EIALTSVLGVCGTLGFHEMGKQIHSYALKTGFSSDLGVANSMVSM 482 (812)
Q Consensus 405 ~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~--~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~ 482 (812)
+..+...|.+.|++++|++.|+++.. . .|+ ..++..+..++...|+++.|...+..+.+.. |+...+..++..
T Consensus 217 ~~~la~~~~~~g~~~~A~~~~~~~~~-~--~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~la~~ 291 (389)
T PRK11788 217 SILLGDLALAQGDYAAAIEALERVEE-Q--DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY--PGADLLLALAQL 291 (389)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH-H--ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchHHHHHHHH
Confidence 77777888888888888888888876 2 333 2345566666777777777777777666643 444455677777
Q ss_pred hhhcCCHHHHHHHHccCCC--CChhHHHHHHHHHHh---cCChHHHHHHHHHHHHCCCCCCHH
Q 040319 483 YFKCCNMSNAIKAFNKMPS--HDIVSWNGLIAGHLL---HRQGDEALAVWSSMEKASIKPDAI 540 (812)
Q Consensus 483 y~k~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~pd~~ 540 (812)
|.+.|++++|..+|+++.+ |+..+++.++..+.. +|+..+++.+|++|.+.++.|+..
T Consensus 292 ~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 292 LEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred HHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 7777777777777776544 777777777766554 457777777777777766666654
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.5e-15 Score=172.67 Aligned_cols=328 Identities=11% Similarity=-0.007 Sum_probs=228.7
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHhccchhhhhHHHHHhhHHHhcCCCchhHHHHHHHHHHhcC
Q 040319 304 ALLAGYCKNGKAMEALGLFVKLLEEGLVLTEFTLTSVVNACGLIMEAKLSEQIHGFVMKFGLGSNDCIEAALLDMLTRCG 383 (812)
Q Consensus 304 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g 383 (812)
.++..+.+.|++++|+.+++..+.....+....+... .+....|+++.|.+.+..+.+.. +.+...+..+...|.+.|
T Consensus 47 ~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~-~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g 124 (656)
T PRK15174 47 LFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWV-ISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSK 124 (656)
T ss_pred HHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHh-hhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcC
Confidence 3444455555555555555555554333322222222 23333555555555555555432 223445566677788888
Q ss_pred CHHHHHHHHhcCCCC-CCceeeeHHHHHHHHHcCChhhHHHHHHHhcccCCCCCChhhHHHHHHHhcCccchHHHHHHHH
Q 040319 384 RMADAEKMFYRWPTD-RDDSIIWTSMICGYARSGKPEHAILLFHQSQSEATVVPDEIALTSVLGVCGTLGFHEMGKQIHS 462 (812)
Q Consensus 384 ~~~~A~~~f~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~ 462 (812)
++++|...|++.... +++...|..+...+...|++++|...++.+.. ..|+.......+..+...|++++|...+.
T Consensus 125 ~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~---~~P~~~~a~~~~~~l~~~g~~~eA~~~~~ 201 (656)
T PRK15174 125 QYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQ---EVPPRGDMIATCLSFLNKSRLPEDHDLAR 201 (656)
T ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 888888888876532 34466778888888888888888888887765 33443332222334667788888888888
Q ss_pred HHHHhCCCCchhHHHHHHHHhhhcCCHHHHHHHHccCCC---CChhHHHHHHHHHHhcCChHH----HHHHHHHHHHCCC
Q 040319 463 YALKTGFSSDLGVANSMVSMYFKCCNMSNAIKAFNKMPS---HDIVSWNGLIAGHLLHRQGDE----ALAVWSSMEKASI 535 (812)
Q Consensus 463 ~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~----A~~l~~~m~~~g~ 535 (812)
.+.+....++......+...+.+.|++++|...|++... .+...+..+...|...|++++ |+..|++..+ +
T Consensus 202 ~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~--l 279 (656)
T PRK15174 202 ALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ--F 279 (656)
T ss_pred HHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh--h
Confidence 877654333444555567788889999999999887664 456778888899999999885 8999999988 6
Q ss_pred CCCH-HHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCC-cchHHHHHHHHhhcCChHHHHHHHHhCC-CCCCHHHH
Q 040319 536 KPDA-ITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPT-SEHYASLVSVLGYWGFLEEAEETINNMP-FQPKVSVW 612 (812)
Q Consensus 536 ~pd~-~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p~~~~~ 612 (812)
.|+. ..+..+...+.. .|++++|...++...+ ..|+ ...+..+..+|.+.|++++|++.++++. ..|+...+
T Consensus 280 ~P~~~~a~~~lg~~l~~--~g~~~eA~~~l~~al~---l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~ 354 (656)
T PRK15174 280 NSDNVRIVTLYADALIR--TGQNEKAIPLLQQSLA---THPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKW 354 (656)
T ss_pred CCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHH
Confidence 7776 566677777777 8999999999998876 3455 5667788899999999999999998866 66765444
Q ss_pred H-HHHHHHHhcCCHHHHHHHHHHHHccCCCCC
Q 040319 613 R-ALLDSCRIRLNTTIGKRVAKHILAMEPQDP 643 (812)
Q Consensus 613 ~-~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~ 643 (812)
. .+..++...|+.+.|...++++++..|++.
T Consensus 355 ~~~~a~al~~~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 355 NRYAAAALLQAGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence 3 345668889999999999999999998854
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=7.9e-16 Score=178.95 Aligned_cols=185 Identities=10% Similarity=0.052 Sum_probs=124.0
Q ss_pred hhcCCHHHHHHHHccCCCCC---hh-HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-----HHHHHHHHHhcCCCC
Q 040319 484 FKCCNMSNAIKAFNKMPSHD---IV-SWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDA-----ITFVLIISAYRYTNL 554 (812)
Q Consensus 484 ~k~g~~~~A~~~f~~~~~~~---~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-----~t~~~ll~a~~~~~~ 554 (812)
...|++++|...|+.+...+ +. .--.+...|...|++++|+..|+++.+. .|.. .....+..++.. .
T Consensus 248 l~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~--~p~~~~~~~~~~~~L~~a~~~--~ 323 (765)
T PRK10049 248 LARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYH--PETIADLSDEELADLFYSLLE--S 323 (765)
T ss_pred HHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhc--CCCCCCCChHHHHHHHHHHHh--c
Confidence 34466666666666665421 11 1111345666677777777777766552 2321 223344445555 6
Q ss_pred chHHHHHHHHHHhhhhcC----------ccCC---cchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHH
Q 040319 555 NLVDSCRKLFLSMKTIYN----------IEPT---SEHYASLVSVLGYWGFLEEAEETINNMP-FQP-KVSVWRALLDSC 619 (812)
Q Consensus 555 g~~~~a~~~~~~m~~~~~----------~~p~---~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~ 619 (812)
|++++|.++++.+.+... -.|+ ...+..++.++...|++++|++.++++. ..| +...+..+...+
T Consensus 324 g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~ 403 (765)
T PRK10049 324 ENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVL 403 (765)
T ss_pred ccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 777777777766654210 0122 2244567778888888899888888865 445 567888888888
Q ss_pred HhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCCcchHHHHHHHHHhC
Q 040319 620 RIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWHNSELVREDMREK 672 (812)
Q Consensus 620 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 672 (812)
...|+.+.|+..++++++++|+++..+..++..+...|+|++|..+++.+.+.
T Consensus 404 ~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 404 QARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred HhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 88899999999999999999998888888888888999999999888887654
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.5e-13 Score=149.19 Aligned_cols=479 Identities=13% Similarity=0.049 Sum_probs=318.1
Q ss_pred hhHHHHHHHHhHhcCCCCCCcchHHHHHHHH--hcCCChHHHHHHHHHHHHhC--CCCchhHHHHHHHHHHhcCChHHHH
Q 040319 182 YEKAFELFRDMKRDNGFTVDYFTISTLLTAC--TGCFVLMEGRAVHAHAIRIG--LGANLSVNNALIGFYTKCGRVKDVV 257 (812)
Q Consensus 182 ~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~--~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~~A~ 257 (812)
.+.|...|....+. .|+.. ...+.+|| -..+++..+..+|..++... ..||+.+.. -..+.++|+.+.|.
T Consensus 146 ~~~A~a~F~~Vl~~---sp~Ni-l~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgi--g~Cf~kl~~~~~a~ 219 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQ---SPDNI-LALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGI--GHCFWKLGMSEKAL 219 (1018)
T ss_pred HHHHHHHHHHHHhh---CCcch-HHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchh--hhHHHhccchhhHH
Confidence 35666666655222 22221 12233333 34556666777776655543 344444332 24556777777777
Q ss_pred HHHhcCCCCcchhHHHHHHHH------HhhCChhHHHHHhccCC---CCCcccHHHHHHHHHhCCChHHHHHHHHHHHHc
Q 040319 258 ALLERMPVMDIITLTEIIIAY------MEFGYVDLAVEIFDKMP---EKNSVSYNALLAGYCKNGKAMEALGLFVKLLEE 328 (812)
Q Consensus 258 ~l~~~~~~~~~~~~~~li~~~------~~~g~~~~A~~~f~~m~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 328 (812)
..|.+..+.|+..-++++... -....+..+..++...- ..|++..+.|...|.-.|+++.+..+...+...
T Consensus 220 ~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~ 299 (1018)
T KOG2002|consen 220 LAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKN 299 (1018)
T ss_pred HHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHh
Confidence 777776655553333332211 11233445555555443 257778888888888888888888888877764
Q ss_pred CCC--CCHhHHHHHHHHhccchhhhhHHHHHhhHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCC-CCceeee
Q 040319 329 GLV--LTEFTLTSVVNACGLIMEAKLSEQIHGFVMKFGLGSNDCIEAALLDMLTRCGRMADAEKMFYRWPTD-RDDSIIW 405 (812)
Q Consensus 329 g~~--p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~-~~~~~~~ 405 (812)
... .-...|-.+-.++-..|+++.|...+-...+..-..-+..+-.|..+|.+.|+++.+...|+.+... +++..+.
T Consensus 300 t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm 379 (1018)
T KOG2002|consen 300 TENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETM 379 (1018)
T ss_pred hhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHH
Confidence 311 1223466677777888888888888877766543333444556889999999999999999887633 4445666
Q ss_pred HHHHHHHHHcC----ChhhHHHHHHHhcccCCCCCChhhHHHHHHHhcCccchHHHHHHHHH----HHHhCCCCchhHHH
Q 040319 406 TSMICGYARSG----KPEHAILLFHQSQSEATVVPDEIALTSVLGVCGTLGFHEMGKQIHSY----ALKTGFSSDLGVAN 477 (812)
Q Consensus 406 ~~li~~~~~~g----~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~----~~~~g~~~~~~~~~ 477 (812)
..+...|+..+ ..+.|..++.+... . ...|...|..+-..+.. ++......++.. +...+-.+.+.+.|
T Consensus 380 ~iLG~Lya~~~~~~~~~d~a~~~l~K~~~-~-~~~d~~a~l~laql~e~-~d~~~sL~~~~~A~d~L~~~~~~ip~E~LN 456 (1018)
T KOG2002|consen 380 KILGCLYAHSAKKQEKRDKASNVLGKVLE-Q-TPVDSEAWLELAQLLEQ-TDPWASLDAYGNALDILESKGKQIPPEVLN 456 (1018)
T ss_pred HHHHhHHHhhhhhhHHHHHHHHHHHHHHh-c-ccccHHHHHHHHHHHHh-cChHHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 66666777664 45667777766665 1 12233345444444433 333333444443 33456668889999
Q ss_pred HHHHHhhhcCCHHHHHHHHccCCC-------CCh------hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 040319 478 SMVSMYFKCCNMSNAIKAFNKMPS-------HDI------VSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDAITFVL 544 (812)
Q Consensus 478 ~Li~~y~k~g~~~~A~~~f~~~~~-------~~~------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ 544 (812)
.+...+...|+++.|...|..... +|. .+-..+...+-..++++.|.+.|...++ ..|+-++-..
T Consensus 457 Nvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilk--ehp~YId~yl 534 (1018)
T KOG2002|consen 457 NVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILK--EHPGYIDAYL 534 (1018)
T ss_pred hHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHH--HCchhHHHHH
Confidence 999999999999999999976543 333 2233355666677899999999999999 7898866443
Q ss_pred HHHHhcCCCCchHHHHHHHHHHhhhhcCccCCcchHHHHHHHHhhcCChHHHHHHHH----hCCCCCCHHHHHHHHHHHH
Q 040319 545 IISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLEEAEETIN----NMPFQPKVSVWRALLDSCR 620 (812)
Q Consensus 545 ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~----~m~~~p~~~~~~~ll~~~~ 620 (812)
=+.+..+ ..+...+|...++.... ....++..++-+.+.+.....+.-|.+-|+ +....+|+.+.-+|.+.|.
T Consensus 535 Rl~~ma~-~k~~~~ea~~~lk~~l~--~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~ 611 (1018)
T KOG2002|consen 535 RLGCMAR-DKNNLYEASLLLKDALN--IDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYI 611 (1018)
T ss_pred HhhHHHH-hccCcHHHHHHHHHHHh--cccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHH
Confidence 3332222 15788899999988875 345567788888888888888777777443 3335578888888888764
Q ss_pred h------------cCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCCcchHHHHHHHHHhCCC
Q 040319 621 I------------RLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWHNSELVREDMREKGF 674 (812)
Q Consensus 621 ~------------~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~ 674 (812)
. .+..++|.+.+.+++..+|.|.-+-+-++-+++..|+|.+|..+|.+.++...
T Consensus 612 ~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~ 677 (1018)
T KOG2002|consen 612 QALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS 677 (1018)
T ss_pred HHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHh
Confidence 2 23468889999999999999999999999999999999999999999988755
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.8e-14 Score=164.72 Aligned_cols=444 Identities=12% Similarity=0.025 Sum_probs=269.4
Q ss_pred hHHHHHHHHHcCCChhHHHHHHHHhHhcCCCCCCcchHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 040319 168 SWNTVISSVVNEFEYEKAFELFRDMKRDNGFTVDYFTISTLLTACTGCFVLMEGRAVHAHAIRIGLGANLSVNNALIGFY 247 (812)
Q Consensus 168 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 247 (812)
.+......+.+.|++++|+..|++.+ .+.|+...|..+..++...|+++.|.+.+..+++.. +.+...+..+..+|
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al---~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~ 204 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAI---ECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAY 204 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH---hcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHH
Confidence 34456677888899999999998873 246777788888888888899999998888888754 34566777788888
Q ss_pred HhcCChHHHHHHHhcCCCC---cchhHHHHHHHHHhhCChhHHHHHhccCCCCCcccHHHHHHHHHhCCChHHHHHHHHH
Q 040319 248 TKCGRVKDVVALLERMPVM---DIITLTEIIIAYMEFGYVDLAVEIFDKMPEKNSVSYNALLAGYCKNGKAMEALGLFVK 324 (812)
Q Consensus 248 ~~~g~~~~A~~l~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~ 324 (812)
...|++++|..-|...... +......++..+.......++...++.-+ ++..++..+.. |........+..-+.+
T Consensus 205 ~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 282 (615)
T TIGR00990 205 DGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKP-ENLPSVTFVGN-YLQSFRPKPRPAGLED 282 (615)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCCCCHHHHHH-HHHHccCCcchhhhhc
Confidence 8888888888766544211 11111111211111112233333333222 22333333222 2211111111111111
Q ss_pred HHHcCCCCCHhHHHHHHHHhccchhhhhHHHHHhhHHHhcCCCchhHHHHHHHH-HHhcCCHHHHHHHHhcCCCC----C
Q 040319 325 LLEEGLVLTEFTLTSVVNACGLIMEAKLSEQIHGFVMKFGLGSNDCIEAALLDM-LTRCGRMADAEKMFYRWPTD----R 399 (812)
Q Consensus 325 m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~-y~~~g~~~~A~~~f~~~~~~----~ 399 (812)
-.+ ..|+.. ...+ ...+... ....+++++|.+.|+..... +
T Consensus 283 ~~~--~~~~~~--~~~~------------------------------~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~ 328 (615)
T TIGR00990 283 SNE--LDEETG--NGQL------------------------------QLGLKSPESKADESYEEAARAFEKALDLGKLGE 328 (615)
T ss_pred ccc--cccccc--cchH------------------------------HHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCCh
Confidence 000 000000 0000 0000000 01234555666666554311 1
Q ss_pred CceeeeHHHHHHHHHcCChhhHHHHHHHhcccCCCCCChh-hHHHHHHHhcCccchHHHHHHHHHHHHhCCCCchhHHHH
Q 040319 400 DDSIIWTSMICGYARSGKPEHAILLFHQSQSEATVVPDEI-ALTSVLGVCGTLGFHEMGKQIHSYALKTGFSSDLGVANS 478 (812)
Q Consensus 400 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~-t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 478 (812)
.+...|+.+...+...|++++|+..|++... ..|+.. .|..+...+...|+++.|...+..+++.. +.+..++..
T Consensus 329 ~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~---l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~ 404 (615)
T TIGR00990 329 KEAIALNLRGTFKCLKGKHLEALADLSKSIE---LDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYH 404 (615)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 1234455566666666777777777666655 345432 45555555666667777777776666543 335667778
Q ss_pred HHHHhhhcCCHHHHHHHHccCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcCCCC
Q 040319 479 MVSMYFKCCNMSNAIKAFNKMPS---HDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDA-ITFVLIISAYRYTNL 554 (812)
Q Consensus 479 Li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~~~ 554 (812)
+...|...|++++|...|++..+ .+...|..+...+.+.|++++|+..|++.++ ..|+. ..+..+..++.. .
T Consensus 405 lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~--~~P~~~~~~~~lg~~~~~--~ 480 (615)
T TIGR00990 405 RAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKK--NFPEAPDVYNYYGELLLD--Q 480 (615)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHH--c
Confidence 88888889999999998887754 3466777888888899999999999999887 56764 566677777777 8
Q ss_pred chHHHHHHHHHHhhhhcCccCCc-c-------hHHHHHHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCC
Q 040319 555 NLVDSCRKLFLSMKTIYNIEPTS-E-------HYASLVSVLGYWGFLEEAEETINNM-PFQPK-VSVWRALLDSCRIRLN 624 (812)
Q Consensus 555 g~~~~a~~~~~~m~~~~~~~p~~-~-------~y~~li~~l~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~~~ 624 (812)
|++++|.+.|+...+ +.|+. . .++.....+...|++++|.+++++. ...|+ ...+..+...+...|+
T Consensus 481 g~~~~A~~~~~~Al~---l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~ 557 (615)
T TIGR00990 481 NKFDEAIEKFDTAIE---LEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGD 557 (615)
T ss_pred cCHHHHHHHHHHHHh---cCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccC
Confidence 999999999988765 33431 1 1122223344569999999999884 36664 4578888889999999
Q ss_pred HHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCCcchHHHHHHHHH
Q 040319 625 TTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWHNSELVREDMR 670 (812)
Q Consensus 625 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 670 (812)
+++|...+++++++.+.....+ ....|.+|.++....+
T Consensus 558 ~~eAi~~~e~A~~l~~~~~e~~--------~a~~~~~a~~~~~~~~ 595 (615)
T TIGR00990 558 VDEALKLFERAAELARTEGELV--------QAISYAEATRTQIQVQ 595 (615)
T ss_pred HHHHHHHHHHHHHHhccHHHHH--------HHHHHHHHHHHHHHHH
Confidence 9999999999999987643322 2234555666655443
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.72 E-value=2e-13 Score=134.56 Aligned_cols=444 Identities=12% Similarity=0.076 Sum_probs=271.5
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC--ChHHH-HHHHHHHHHhCCCCchHHHHHHH
Q 040319 65 VSFTSLISGLAKLGREEEAIELFFRMRSEGIVPNEHSFVAILTACIRLL--ELELG-FQIHALIVKMGCVDSVFVTNALM 141 (812)
Q Consensus 65 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~--~~~~a-~~~~~~~~~~g~~~~~~~~~~li 141 (812)
++-|.|+. ....|...++.-+|+.|+..|+..++..-..+++..+-.+ ++.-+ ++-|-.|.+.|-.. ..+
T Consensus 117 ~~E~nL~k-mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S-~~s----- 189 (625)
T KOG4422|consen 117 ETENNLLK-MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDS-TSS----- 189 (625)
T ss_pred cchhHHHH-HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccc-ccc-----
Confidence 34555554 4567899999999999999999988887777776554333 22222 23344444444322 222
Q ss_pred HHhhhcCCCHHHHHHHHhcCCCCCcchHHHHHHHHHcCCChhHHHHHHHHhHhcCCCCCCcchHHHHHHHHhcCCChHHH
Q 040319 142 GLYGKFSFCLDYLLKLFDELPHKDTVSWNTVISSVVNEFEYEKAFELFRDMKRDNGFTVDYFTISTLLTACTGCFVLMEG 221 (812)
Q Consensus 142 ~~y~~~g~~~~~a~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~~~~~~a 221 (812)
-|.| ++ |.-+|+.. .....+|..||.++++-...+.|.++|++- +....+.+..+|+.+|.+-+ +..+
T Consensus 190 ---WK~G-~v--AdL~~E~~-PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~-~~~k~kv~~~aFN~lI~~~S----~~~~ 257 (625)
T KOG4422|consen 190 ---WKSG-AV--ADLLFETL-PKTDETVSIMIAGLCKFSSLERARELYKEH-RAAKGKVYREAFNGLIGASS----YSVG 257 (625)
T ss_pred ---cccc-cH--HHHHHhhc-CCCchhHHHHHHHHHHHHhHHHHHHHHHHH-HHhhheeeHHhhhhhhhHHH----hhcc
Confidence 2344 44 44455544 456779999999999999999999999999 78888999999999998854 3445
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCcchhHHHHHHHHHhhCChhHHHHHhccCCCCCccc
Q 040319 222 RAVHAHAIRIGLGANLSVNNALIGFYTKCGRVKDVVALLERMPVMDIITLTEIIIAYMEFGYVDLAVEIFDKMPEKNSVS 301 (812)
Q Consensus 222 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~d~~~ 301 (812)
+.+..+|+...+.||..++|+++.+.++.|+++.|.+
T Consensus 258 K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~------------------------------------------- 294 (625)
T KOG4422|consen 258 KKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARK------------------------------------------- 294 (625)
T ss_pred HHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHH-------------------------------------------
Confidence 8999999999999999999999999999999999888
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHhccchhhhhH-HHHHhhHHH----hcCC----CchhHH
Q 040319 302 YNALLAGYCKNGKAMEALGLFVKLLEEGLVLTEFTLTSVVNACGLIMEAKLS-EQIHGFVMK----FGLG----SNDCIE 372 (812)
Q Consensus 302 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a-~~i~~~~~~----~g~~----~~~~~~ 372 (812)
.|++++.+|++-|+.|...+|..+|..+.+.++..+. ..+..++.. ..+. .|...+
T Consensus 295 ---------------aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF 359 (625)
T KOG4422|consen 295 ---------------AALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFF 359 (625)
T ss_pred ---------------HHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHH
Confidence 2344445555555555555555555544444443221 111111111 1111 122333
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCCC------CCc---eeeeHHHHHHHHHcCChhhHHHHHHHhcccCCCCCChhhHHH
Q 040319 373 AALLDMLTRCGRMADAEKMFYRWPTD------RDD---SIIWTSMICGYARSGKPEHAILLFHQSQSEATVVPDEIALTS 443 (812)
Q Consensus 373 ~~Li~~y~~~g~~~~A~~~f~~~~~~------~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ 443 (812)
..-++.+.+..+.+-|.++-.-+... +++ ..-|..+....++....+.-+..|+.|.- .-.-|+..+...
T Consensus 360 ~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP-~~y~p~~~~m~~ 438 (625)
T KOG4422|consen 360 QSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVP-SAYFPHSQTMIH 438 (625)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ceecCCchhHHH
Confidence 33444444444544444443322211 111 22355566777888888888889998887 778889999999
Q ss_pred HHHHhcCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHhhhcCCHHHHHHHHccCCCCChh---HHHHHHHHHHhcCCh
Q 040319 444 VLGVCGTLGFHEMGKQIHSYALKTGFSSDLGVANSMVSMYFKCCNMSNAIKAFNKMPSHDIV---SWNGLIAGHLLHRQG 520 (812)
Q Consensus 444 ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~---~~~~li~~~~~~g~~ 520 (812)
+++|....+.++...+++..++..|.........-+...+++.. ..|+.. -+.....-++ ..-.
T Consensus 439 ~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k------------~hp~tp~r~Ql~~~~ak~a-ad~~ 505 (625)
T KOG4422|consen 439 LLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDK------------LHPLTPEREQLQVAFAKCA-ADIK 505 (625)
T ss_pred HHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCC------------CCCCChHHHHHHHHHHHHH-HHHH
Confidence 99999999999999999988888775433222222222222211 113222 1111111111 1111
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCCcchHHHHHHHH---hhcCChHHHH
Q 040319 521 DEALAVWSSMEKASIKPDAITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVL---GYWGFLEEAE 597 (812)
Q Consensus 521 ~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l---~~~g~~~~A~ 597 (812)
+.....-.+|.+....|....-..+ .+.+ .|..++|+++|..+.+.++-.|.....++|+... .+......|.
T Consensus 506 e~~e~~~~R~r~~~~~~t~l~~ia~--Ll~R--~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~ 581 (625)
T KOG4422|consen 506 EAYESQPIRQRAQDWPATSLNCIAI--LLLR--AGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAI 581 (625)
T ss_pred HHHHhhHHHHHhccCChhHHHHHHH--HHHH--cchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHH
Confidence 2222334456665555555443333 3445 8888888888888866566666666666655443 3444555555
Q ss_pred HHHHhC
Q 040319 598 ETINNM 603 (812)
Q Consensus 598 ~~~~~m 603 (812)
..++-|
T Consensus 582 ~~lQ~a 587 (625)
T KOG4422|consen 582 EVLQLA 587 (625)
T ss_pred HHHHHH
Confidence 555544
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=4.5e-15 Score=168.86 Aligned_cols=326 Identities=8% Similarity=-0.094 Sum_probs=263.0
Q ss_pred hHHHHHHHHhccchhhhhHHHHHhhHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCC-CCceeeeHHHHHHHH
Q 040319 335 FTLTSVVNACGLIMEAKLSEQIHGFVMKFGLGSNDCIEAALLDMLTRCGRMADAEKMFYRWPTD-RDDSIIWTSMICGYA 413 (812)
Q Consensus 335 ~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~-~~~~~~~~~li~~~~ 413 (812)
.....++..+.+.|+++.+..++..++.....+....+. ++......|++++|...|+++... +++...|..+...+.
T Consensus 43 ~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~-l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~ 121 (656)
T PRK15174 43 QNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRR-WVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLL 121 (656)
T ss_pred cCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHH-HhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 345566777888999999999999998876665444444 446666799999999999997633 445677888899999
Q ss_pred HcCChhhHHHHHHHhcccCCCCCChh-hHHHHHHHhcCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHhhhcCCHHHH
Q 040319 414 RSGKPEHAILLFHQSQSEATVVPDEI-ALTSVLGVCGTLGFHEMGKQIHSYALKTGFSSDLGVANSMVSMYFKCCNMSNA 492 (812)
Q Consensus 414 ~~g~~~~A~~~~~~m~~~~g~~p~~~-t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A 492 (812)
+.|++++|+..|++... +.|+.. .+..+...+...|+.+.|...+..+......+ ...+..+ ..+.+.|++++|
T Consensus 122 ~~g~~~~Ai~~l~~Al~---l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~-~~a~~~~-~~l~~~g~~~eA 196 (656)
T PRK15174 122 KSKQYATVADLAEQAWL---AFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPR-GDMIATC-LSFLNKSRLPED 196 (656)
T ss_pred HcCCHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCC-HHHHHHH-HHHHHcCCHHHH
Confidence 99999999999999987 667654 56677788999999999999999887755333 2333333 347889999999
Q ss_pred HHHHccCCCC----ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcCCCCchHHH----HHHH
Q 040319 493 IKAFNKMPSH----DIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDA-ITFVLIISAYRYTNLNLVDS----CRKL 563 (812)
Q Consensus 493 ~~~f~~~~~~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~~~g~~~~----a~~~ 563 (812)
...++.+.+. +...+..+...+...|++++|+..|+++.+ ..|+. ..+..+..++.. .|++++ |...
T Consensus 197 ~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~--~~p~~~~~~~~Lg~~l~~--~G~~~eA~~~A~~~ 272 (656)
T PRK15174 197 HDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALA--RGLDGAALRRSLGLAYYQ--SGRSREAKLQAAEH 272 (656)
T ss_pred HHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHH--cCCchhhHHHHHHH
Confidence 9999987552 334445567788999999999999999998 56765 556666677777 898885 8999
Q ss_pred HHHhhhhcCccCC-cchHHHHHHHHhhcCChHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHccCC
Q 040319 564 FLSMKTIYNIEPT-SEHYASLVSVLGYWGFLEEAEETINNMP-FQPK-VSVWRALLDSCRIRLNTTIGKRVAKHILAMEP 640 (812)
Q Consensus 564 ~~~m~~~~~~~p~-~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p 640 (812)
|+...+ +.|+ ...+..+..++.+.|++++|+..+++.. ..|+ ..++..+..++...|+.+.|...++++++.+|
T Consensus 273 ~~~Al~---l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P 349 (656)
T PRK15174 273 WRHALQ---FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKG 349 (656)
T ss_pred HHHHHh---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc
Confidence 998876 4565 6789999999999999999999999865 5664 66777888889999999999999999999999
Q ss_pred CCCchHHHHHhhhhhCCCcchHHHHHHHHHhCC
Q 040319 641 QDPATYILVSNLYSSSGRWHNSELVREDMREKG 673 (812)
Q Consensus 641 ~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g 673 (812)
+++..+..++.+|...|++++|...+++..+..
T Consensus 350 ~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 350 VTSKWNRYAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred cchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 988777778999999999999999999876543
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.4e-13 Score=156.74 Aligned_cols=427 Identities=13% Similarity=0.077 Sum_probs=208.1
Q ss_pred HHHcCCChhHHHHHHHHhHhcCCCCCCcc-hHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCh
Q 040319 175 SVVNEFEYEKAFELFRDMKRDNGFTVDYF-TISTLLTACTGCFVLMEGRAVHAHAIRIGLGANLSVNNALIGFYTKCGRV 253 (812)
Q Consensus 175 ~~~~~g~~~~A~~l~~~m~~~~g~~pd~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 253 (812)
...+.|+++.|++.|++.. . ..|+.. ....++..+...|+.++|...++..+. .-.........+...|...|++
T Consensus 43 i~~r~Gd~~~Al~~L~qaL-~--~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~-p~n~~~~~llalA~ly~~~gdy 118 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEES-K--AGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQS-SMNISSRGLASAARAYRNEKRW 118 (822)
T ss_pred HHHhCCCHHHHHHHHHHHH-h--hCccchhhHHHHHHHHHHcCCcHHHHHHHHHhcc-CCCCCHHHHHHHHHHHHHcCCH
Confidence 3567888888888888773 2 345542 222666667777888888887777761 1122223333335567777888
Q ss_pred HHHHHHHhcCCCC---cchhHHHHHHHHHhhCChhHHHHHhccCCCCCcccHHHHHHHHHh--CCChHHHHHHHHHHHHc
Q 040319 254 KDVVALLERMPVM---DIITLTEIIIAYMEFGYVDLAVEIFDKMPEKNSVSYNALLAGYCK--NGKAMEALGLFVKLLEE 328 (812)
Q Consensus 254 ~~A~~l~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~--~g~~~~A~~l~~~m~~~ 328 (812)
++|.++|+++.+. +...+..++..|.+.++.++|++.++++...+......+..+|.. .++..+|++.++++.+.
T Consensus 119 d~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~ 198 (822)
T PRK14574 119 DQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVRL 198 (822)
T ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHh
Confidence 8888887777422 345555666777777777777777777765443322223333333 44554577777777765
Q ss_pred CCCCCHhHHHHHHHHhccchhhhhHHHHHhhHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCCceeeeHHH
Q 040319 329 GLVLTEFTLTSVVNACGLIMEAKLSEQIHGFVMKFGLGSNDCIEAALLDMLTRCGRMADAEKMFYRWPTDRDDSIIWTSM 408 (812)
Q Consensus 329 g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~~~l 408 (812)
. |+ +...+..++....+.|-...|.++..+-+ .--+...+.-+
T Consensus 199 ~--P~----------------------------------n~e~~~~~~~~l~~~~~~~~a~~l~~~~p-~~f~~~~~~~l 241 (822)
T PRK14574 199 A--PT----------------------------------SEEVLKNHLEILQRNRIVEPALRLAKENP-NLVSAEHYRQL 241 (822)
T ss_pred C--CC----------------------------------CHHHHHHHHHHHHHcCCcHHHHHHHHhCc-cccCHHHHHHH
Confidence 3 33 22233333344444444444444443322 10000000000
Q ss_pred ----HHHHH---------HcCC---hhhHHHHHHHhcccCCCCCChhh-H----HHHHHHhcCccchHHHHHHHHHHHHh
Q 040319 409 ----ICGYA---------RSGK---PEHAILLFHQSQSEATVVPDEIA-L----TSVLGVCGTLGFHEMGKQIHSYALKT 467 (812)
Q Consensus 409 ----i~~~~---------~~g~---~~~A~~~~~~m~~~~g~~p~~~t-~----~~ll~a~~~~~~~~~a~~~~~~~~~~ 467 (812)
+.-.+ ..++ .+.|+.-++.+...-+-.|.... | .=.+-++...++...+...++.+...
T Consensus 242 ~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~ 321 (822)
T PRK14574 242 ERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAE 321 (822)
T ss_pred HHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhc
Confidence 00000 0111 23334444443321222232111 1 11223444555555555555555555
Q ss_pred CCCCchhHHHHHHHHhhhcCCHHHHHHHHccCCCC---------ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 040319 468 GFSSDLGVANSMVSMYFKCCNMSNAIKAFNKMPSH---------DIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPD 538 (812)
Q Consensus 468 g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~---------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd 538 (812)
+.+....+--++.++|...++.++|..+|..+..+ +......|.-+|...+++++|..+++++.+. .|-
T Consensus 322 ~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~--~p~ 399 (822)
T PRK14574 322 GYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQ--TPY 399 (822)
T ss_pred CCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCc
Confidence 54444445555566666666666666665554321 1112244555555566666666666655541 110
Q ss_pred HHHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCC---cchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHH
Q 040319 539 AITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPT---SEHYASLVSVLGYWGFLEEAEETINNMP-FQP-KVSVWR 613 (812)
Q Consensus 539 ~~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~---~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~ 613 (812)
.+. . +.. ..-.|+ ...+..++..+...|++.+|++.++++. ..| |..++.
T Consensus 400 ~~~---~---~~~-------------------~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~ 454 (822)
T PRK14574 400 QVG---V---YGL-------------------PGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRI 454 (822)
T ss_pred EEe---c---cCC-------------------CCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 000 0 000 000011 1222333444455555555555555543 233 444555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCCcchHHHHHHHH
Q 040319 614 ALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWHNSELVREDM 669 (812)
Q Consensus 614 ~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 669 (812)
.+...++..|+...|+..++.+..++|++..+...++..+-+.|+|++|.++.+..
T Consensus 455 ~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l 510 (822)
T PRK14574 455 ALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDV 510 (822)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 55555555555555555555555555555555555555555555555555554444
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.2e-12 Score=152.50 Aligned_cols=408 Identities=8% Similarity=-0.078 Sum_probs=196.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHhhhcCCCHHHHHHHHhcC---CCCCcchHHHHHHHHHc
Q 040319 102 FVAILTACIRLLELELGFQIHALIVKMGCVDSVFVTNALMGLYGKFSFCLDYLLKLFDEL---PHKDTVSWNTVISSVVN 178 (812)
Q Consensus 102 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~~a~~~f~~~---~~~~~~~~~~li~~~~~ 178 (812)
..-.+......|+.++|.+++....... +.+...+..+...+.+.| +.+.|.+++++. ...+...+..+...+..
T Consensus 18 ~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g-~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~ 95 (765)
T PRK10049 18 IADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLK-QWQNSLTLWQKALSLEPQNDDYQRGLILTLAD 95 (765)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 3334444444455555544444443311 222333444444455555 555555555542 12234445555566666
Q ss_pred CCChhHHHHHHHHhHhcCCCCCCcchHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHH
Q 040319 179 EFEYEKAFELFRDMKRDNGFTVDYFTISTLLTACTGCFVLMEGRAVHAHAIRIGLGANLSVNNALIGFYTKCGRVKDVVA 258 (812)
Q Consensus 179 ~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 258 (812)
.|++++|+..+++.... .|+...+..+..++...|+.+.|...+..+++.. +.+..++..+...+...|..+.|..
T Consensus 96 ~g~~~eA~~~l~~~l~~---~P~~~~~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~ 171 (765)
T PRK10049 96 AGQYDEALVKAKQLVSG---APDKANLLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALG 171 (765)
T ss_pred CCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHH
Confidence 66666666666665222 2322224455555556666666666666666543 2334444455666666666666766
Q ss_pred HHhcCCCCcchhHHHHHHHHHhhCChhHHHHHhccCCCCCcccHHHHHHHH-----HhCCCh---HHHHHHHHHHHHc-C
Q 040319 259 LLERMPVMDIITLTEIIIAYMEFGYVDLAVEIFDKMPEKNSVSYNALLAGY-----CKNGKA---MEALGLFVKLLEE-G 329 (812)
Q Consensus 259 l~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~-----~~~g~~---~~A~~l~~~m~~~-g 329 (812)
.++.... ++.....+ . ......++... ...+++ ++|++.++.+.+. .
T Consensus 172 ~l~~~~~-~p~~~~~l-~----------------------~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~ 227 (765)
T PRK10049 172 AIDDANL-TPAEKRDL-E----------------------ADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWH 227 (765)
T ss_pred HHHhCCC-CHHHHHHH-H----------------------HHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcc
Confidence 5555443 11000000 0 00000011111 111222 4556666666543 1
Q ss_pred CCCCHh-HHH----HHHHHhccchhhhhHHHHHhhHHHhcCC-CchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCCce-
Q 040319 330 LVLTEF-TLT----SVVNACGLIMEAKLSEQIHGFVMKFGLG-SNDCIEAALLDMLTRCGRMADAEKMFYRWPTDRDDS- 402 (812)
Q Consensus 330 ~~p~~~-t~~----~ll~a~~~~~~~~~a~~i~~~~~~~g~~-~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~- 402 (812)
..|+.. .+. ..+.++...++.+.|...++.+.+.+.. |+ .....+...|...|++++|...|+++....|..
T Consensus 228 ~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~-~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~ 306 (765)
T PRK10049 228 DNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPP-WAQRWVASAYLKLHQPEKAQSILTELFYHPETIA 306 (765)
T ss_pred cCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCH-HHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCC
Confidence 222221 110 0022233445555555555555554422 21 112224556777777777777777754222211
Q ss_pred ----eeeHHHHHHHHHcCChhhHHHHHHHhcccCCCCCChhhHHHHHHHhcCccchHHHHHHHHHHHHhCCCCc---hhH
Q 040319 403 ----IIWTSMICGYARSGKPEHAILLFHQSQSEATVVPDEIALTSVLGVCGTLGFHEMGKQIHSYALKTGFSSD---LGV 475 (812)
Q Consensus 403 ----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~---~~~ 475 (812)
..+..+..++...|++++|++.++++.. ..|......... .-.|+ ...
T Consensus 307 ~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~---~~P~~~~~~~~~----------------------~~~p~~~~~~a 361 (765)
T PRK10049 307 DLSDEELADLFYSLLESENYPGALTVTAHTIN---NSPPFLRLYGSP----------------------TSIPNDDWLQG 361 (765)
T ss_pred CCChHHHHHHHHHHHhcccHHHHHHHHHHHhh---cCCceEeecCCC----------------------CCCCCchHHHH
Confidence 1234455566777778888777777765 223211000000 00112 123
Q ss_pred HHHHHHHhhhcCCHHHHHHHHccCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH-HHHHHHHhcC
Q 040319 476 ANSMVSMYFKCCNMSNAIKAFNKMPS---HDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDAIT-FVLIISAYRY 551 (812)
Q Consensus 476 ~~~Li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t-~~~ll~a~~~ 551 (812)
+..+...+...|+.++|..+++++.. .+...+..+...+...|++++|++.+++.++ +.||... +.........
T Consensus 362 ~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~--l~Pd~~~l~~~~a~~al~ 439 (765)
T PRK10049 362 QSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEV--LEPRNINLEVEQAWTALD 439 (765)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--hCCCChHHHHHHHHHHHH
Confidence 34455566666666666666666543 3345566666666666666666666666666 5566532 2222223334
Q ss_pred CCCchHHHHHHHHHHhhh
Q 040319 552 TNLNLVDSCRKLFLSMKT 569 (812)
Q Consensus 552 ~~~g~~~~a~~~~~~m~~ 569 (812)
.|++++|...++.+.+
T Consensus 440 --~~~~~~A~~~~~~ll~ 455 (765)
T PRK10049 440 --LQEWRQMDVLTDDVVA 455 (765)
T ss_pred --hCCHHHHHHHHHHHHH
Confidence 5666666666666665
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.2e-12 Score=126.29 Aligned_cols=307 Identities=13% Similarity=0.142 Sum_probs=170.9
Q ss_pred HhccCCchHHHHHHHHHHHhccCCCccchHHHHHHHHc--cCChhh-HHHHHhcCC-----------------------C
Q 040319 8 SVQCGEVSLAKAIHASLIKLLLEQDTRFGNPLISAYLK--LGHVAD-AYKIFYGLS-----------------------S 61 (812)
Q Consensus 8 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~--~g~~~~-A~~~f~~~~-----------------------~ 61 (812)
...+|.+..+--+++.|...|.+.+..+--.|+..-+- ..++.- -.+.|-.|. .
T Consensus 125 mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAdL~~E~~P 204 (625)
T KOG4422|consen 125 MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVADLLFETLP 204 (625)
T ss_pred HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHHHHHHhhcC
Confidence 44567888888889999888877777666666554332 222211 122232222 1
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchHHHHHHH
Q 040319 62 PNVVSFTSLISGLAKLGREEEAIELFFRMRSEGIVPNEHSFVAILTACIRLLELELGFQIHALIVKMGCVDSVFVTNALM 141 (812)
Q Consensus 62 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 141 (812)
.+..+|..||.++++--..+.|.++|++-.....+.+..+||.+|.+..- ..++.+..+|+...+.||.+++|+++
T Consensus 205 KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~----~~~K~Lv~EMisqkm~Pnl~TfNalL 280 (625)
T KOG4422|consen 205 KTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY----SVGKKLVAEMISQKMTPNLFTFNALL 280 (625)
T ss_pred CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----hccHHHHHHHHHhhcCCchHhHHHHH
Confidence 23345555666666555556666666655555555555566555544332 22345555555555555555555555
Q ss_pred HHhhhcCCCHHHHHHHHhcCCCCCcchHHHHHHHHHcCCChhHHHHHHHHhHhcCCCCCCcchHHHHHHHHhcCCChHH-
Q 040319 142 GLYGKFSFCLDYLLKLFDELPHKDTVSWNTVISSVVNEFEYEKAFELFRDMKRDNGFTVDYFTISTLLTACTGCFVLME- 220 (812)
Q Consensus 142 ~~y~~~g~~~~~a~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~~~~~~- 220 (812)
...++.| .++.|++ .|++++.+| +.-|+.|...+|..+|.-+.+.++...
T Consensus 281 ~c~akfg-~F~~ar~---------------------------aalqil~Em-KeiGVePsLsSyh~iik~f~re~dp~k~ 331 (625)
T KOG4422|consen 281 SCAAKFG-KFEDARK---------------------------AALQILGEM-KEIGVEPSLSSYHLIIKNFKRESDPQKV 331 (625)
T ss_pred HHHHHhc-chHHHHH---------------------------HHHHHHHHH-HHhCCCcchhhHHHHHHHhcccCCchhh
Confidence 5555555 4444442 356677777 777788887777777777766666533
Q ss_pred HHHHHHHHHHh--C--C----CCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCcchhHHHHHHHHHhhCChhHHHHHhc
Q 040319 221 GRAVHAHAIRI--G--L----GANLSVNNALIGFYTKCGRVKDVVALLERMPVMDIITLTEIIIAYMEFGYVDLAVEIFD 292 (812)
Q Consensus 221 a~~~~~~~~~~--g--~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~ 292 (812)
+..+..++... | + +.|...+...++.|.+..+.+-|.++-.-.. .|+- +.
T Consensus 332 as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~----------------tg~N------~~ 389 (625)
T KOG4422|consen 332 ASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLK----------------TGDN------WK 389 (625)
T ss_pred hHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHH----------------cCCc------hh
Confidence 33344444321 1 1 2234455556666666666666666332221 1110 00
Q ss_pred cCCC--CCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHhccchhhhhHHHHHhhHHHhcCCCch
Q 040319 293 KMPE--KNSVSYNALLAGYCKNGKAMEALGLFVKLLEEGLVLTEFTLTSVVNACGLIMEAKLSEQIHGFVMKFGLGSND 369 (812)
Q Consensus 293 ~m~~--~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~ 369 (812)
.|.. ....-|..+....++....+.-+.+|+.|+-+-.-|+..+...++.|....+.++...+++..++..|.....
T Consensus 390 ~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~ 468 (625)
T KOG4422|consen 390 FIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRS 468 (625)
T ss_pred hcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhH
Confidence 0110 0112244455556666666666777777766666677777777777777777777777777666666544333
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.2e-12 Score=147.12 Aligned_cols=453 Identities=11% Similarity=0.047 Sum_probs=297.7
Q ss_pred HHhhhcCCCHHHHHHHHhcCCCCCcc---hHHHHHHHHHcCCChhHHHHHHHHhHhcCCCCCCcchHHHH---HHHHhcC
Q 040319 142 GLYGKFSFCLDYLLKLFDELPHKDTV---SWNTVISSVVNEFEYEKAFELFRDMKRDNGFTVDYFTISTL---LTACTGC 215 (812)
Q Consensus 142 ~~y~~~g~~~~~a~~~f~~~~~~~~~---~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~l---l~~~~~~ 215 (812)
-...+.| +++.|...|++..+.+.. ....++..+...|+.++|+..+++. . .|+...+..+ ...+...
T Consensus 42 ii~~r~G-d~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka-~----~p~n~~~~~llalA~ly~~~ 115 (822)
T PRK14574 42 IIRARAG-DTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERY-Q----SSMNISSRGLASAARAYRNE 115 (822)
T ss_pred HHHHhCC-CHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHh-c----cCCCCCHHHHHHHHHHHHHc
Confidence 3456789 999999999988753322 2338889999999999999999988 3 5544443333 4467788
Q ss_pred CChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCcchhHHHHHHHHHh--hCChhHHHHHhcc
Q 040319 216 FVLMEGRAVHAHAIRIGLGANLSVNNALIGFYTKCGRVKDVVALLERMPVMDIITLTEIIIAYME--FGYVDLAVEIFDK 293 (812)
Q Consensus 216 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~li~~~~~--~g~~~~A~~~f~~ 293 (812)
|+++.|.++++.+++.. +.+..++..++..|...++.++|++.++++...+......+..+|.. .++..+|++.+++
T Consensus 116 gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ek 194 (822)
T PRK14574 116 KRWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSE 194 (822)
T ss_pred CCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 99999999999999876 44467777889999999999999999999976555433334445554 5556569999999
Q ss_pred CCC--C-CcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHhccchhhhhHHHHHhhHHHhcCCCchh
Q 040319 294 MPE--K-NSVSYNALLAGYCKNGKAMEALGLFVKLLEEGLVLTEFTLTSVVNACGLIMEAKLSEQIHGFVMKFGLGSNDC 370 (812)
Q Consensus 294 m~~--~-d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~ 370 (812)
+.+ | +...+..+..+..+.|-...|+++..+- |+.++=..... .-.......++.+..++..
T Consensus 195 ll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~------p~~f~~~~~~~---------l~~~~~a~~vr~a~~~~~~ 259 (822)
T PRK14574 195 AVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKEN------PNLVSAEHYRQ---------LERDAAAEQVRMAVLPTRS 259 (822)
T ss_pred HHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhC------ccccCHHHHHH---------HHHHHHHHHHhhccccccc
Confidence 876 3 4456677888899999999998777652 33222111110 0001111222222211110
Q ss_pred HHHHHHHHHHhcCCHHHHHHH----HhcCCCCCCceeee----HHHHHHHHHcCChhhHHHHHHHhcccCCCCCChhhHH
Q 040319 371 IEAALLDMLTRCGRMADAEKM----FYRWPTDRDDSIIW----TSMICGYARSGKPEHAILLFHQSQSEATVVPDEIALT 442 (812)
Q Consensus 371 ~~~~Li~~y~~~g~~~~A~~~----f~~~~~~~~~~~~~----~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~ 442 (812)
-- . +.--.+.|..- +..+...++....| --.+-++...|++.++++.|+.+.. .+.+....+-.
T Consensus 260 ~~----~---r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~-~~~~~P~y~~~ 331 (822)
T PRK14574 260 ET----E---RFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEA-EGYKMPDYARR 331 (822)
T ss_pred ch----h---hHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhh-cCCCCCHHHHH
Confidence 00 0 00012222222 22222112211112 1234567778888888888888887 66543444667
Q ss_pred HHHHHhcCccchHHHHHHHHHHHHhC-----CCCchhHHHHHHHHhhhcCCHHHHHHHHccCCCCChhHHHHHHHHHHhc
Q 040319 443 SVLGVCGTLGFHEMGKQIHSYALKTG-----FSSDLGVANSMVSMYFKCCNMSNAIKAFNKMPSHDIVSWNGLIAGHLLH 517 (812)
Q Consensus 443 ~ll~a~~~~~~~~~a~~~~~~~~~~g-----~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~ 517 (812)
.+.+++...+.+++|..++..+.... ..++......|.-+|...+++++|..+++.+.+..+ | .+.-+
T Consensus 332 a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p--~--~~~~~--- 404 (822)
T PRK14574 332 WAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTP--Y--QVGVY--- 404 (822)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCC--c--EEecc---
Confidence 78888888888888888888876643 123444457889999999999999999998876222 1 00000
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHH-HHHHHhcCCCCchHHHHHHHHHHhhhhcCccCCcchHHHHHHHHhhcCChHHH
Q 040319 518 RQGDEALAVWSSMEKASIKPDAITFV-LIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLEEA 596 (812)
Q Consensus 518 g~~~~A~~l~~~m~~~g~~pd~~t~~-~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A 596 (812)
|... ..-.||-.... .+...+.. .|++.+|++.++.+... -+-+......+.+++...|+..+|
T Consensus 405 ~~~~-----------~~pn~d~~~~~~l~a~~~~~--~gdl~~Ae~~le~l~~~--aP~n~~l~~~~A~v~~~Rg~p~~A 469 (822)
T PRK14574 405 GLPG-----------KEPNDDWIEGQTLLVQSLVA--LNDLPTAQKKLEDLSST--APANQNLRIALASIYLARDLPRKA 469 (822)
T ss_pred CCCC-----------CCCCccHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCHHHH
Confidence 0000 11334443332 23334555 78888888888888652 233578888899999999999999
Q ss_pred HHHHHhCC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchH
Q 040319 597 EETINNMP-FQPK-VSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATY 646 (812)
Q Consensus 597 ~~~~~~m~-~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 646 (812)
++.++... ..|+ ..+......+....++.++|+.+.+.+++..|+++.+-
T Consensus 470 ~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~~ 521 (822)
T PRK14574 470 EQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPEDIPSQ 521 (822)
T ss_pred HHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchhHH
Confidence 99997765 5674 55666777778888999999999999999999987543
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.3e-11 Score=132.73 Aligned_cols=633 Identities=12% Similarity=0.025 Sum_probs=318.3
Q ss_pred HHHHHHHHHhccCCCccchHHHHHHHHccCChhhHHHHHhcCCCC----ChhhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 040319 18 KAIHASLIKLLLEQDTRFGNPLISAYLKLGHVADAYKIFYGLSSP----NVVSFTSLISGLAKLGREEEAIELFFRMRSE 93 (812)
Q Consensus 18 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 93 (812)
..++..+...|+.|+..+|.+||..||..|+.+.|- +|..|.-+ +...++.++.+..+.++.+.+.
T Consensus 10 tnfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk--------- 79 (1088)
T KOG4318|consen 10 TNFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK--------- 79 (1088)
T ss_pred chHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC---------
Confidence 456778889999999999999999999999999999 88777532 2334555665555555554443
Q ss_pred CCCCChhhHHHHHHHHHhcCChHHHHHH---HHHHH----HhCC-----------------CCchHH----------HHH
Q 040319 94 GIVPNEHSFVAILTACIRLLELELGFQI---HALIV----KMGC-----------------VDSVFV----------TNA 139 (812)
Q Consensus 94 g~~p~~~~~~~ll~~~~~~~~~~~a~~~---~~~~~----~~g~-----------------~~~~~~----------~~~ 139 (812)
.|.+.||..++.+|...||+..-..+ +..+. ..|+ -||... |..
T Consensus 80 --ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaq 157 (1088)
T KOG4318|consen 80 --EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQ 157 (1088)
T ss_pred --CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHH
Confidence 45566666666666666654431111 11111 1111 111100 011
Q ss_pred HHHHhhhc-------------------CCCHHHHHHHHhcCC-CCCcchHHHHHHHHHcCCChhHHHHHHHHhHhcCCCC
Q 040319 140 LMGLYGKF-------------------SFCLDYLLKLFDELP-HKDTVSWNTVISSVVNEFEYEKAFELFRDMKRDNGFT 199 (812)
Q Consensus 140 li~~y~~~-------------------g~~~~~a~~~f~~~~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~ 199 (812)
++....++ ...++....+..... .++..++.+++..-..+|+.+.|..++.+| ++.|++
T Consensus 158 llkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~em-ke~gfp 236 (1088)
T KOG4318|consen 158 LLKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEM-KEKGFP 236 (1088)
T ss_pred HHHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHH-HHcCCC
Confidence 11111000 001111111111222 267777778887777888888888888888 777888
Q ss_pred CCcchHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCcchhHHHHHHHHH
Q 040319 200 VDYFTISTLLTACTGCFVLMEGRAVHAHAIRIGLGANLSVNNALIGFYTKCGRVKDVVALLERMPVMDIITLTEIIIAYM 279 (812)
Q Consensus 200 pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~li~~~~ 279 (812)
.+.+-|-.+|-+ .++......+..-|...|+.|+..|+...+-.+.++|....+....+--..-....+..+..+..
T Consensus 237 ir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~ 313 (1088)
T KOG4318|consen 237 IRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLL 313 (1088)
T ss_pred cccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcccH
Confidence 777776666654 66777777777788888888888887777766666554333222111100001111222222211
Q ss_pred hhCChhHHH--HHhccCCC-------CCcccHHHHHHHHHhCCChHHHHHHHHHHHHc--CCCCC-HhHHHHHHHHhccc
Q 040319 280 EFGYVDLAV--EIFDKMPE-------KNSVSYNALLAGYCKNGKAMEALGLFVKLLEE--GLVLT-EFTLTSVVNACGLI 347 (812)
Q Consensus 280 ~~g~~~~A~--~~f~~m~~-------~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~p~-~~t~~~ll~a~~~~ 347 (812)
.+.+++.-. -+....++ ....+|...+. ....|.-++..++-..|..- ...|+ ...|..++.-+.+.
T Consensus 314 a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~-l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFrr 392 (1088)
T KOG4318|consen 314 ANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEK-LRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFRR 392 (1088)
T ss_pred hHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHH-HHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHHH
Confidence 111111100 01111111 11122322222 22245555555555555321 11221 11232222222111
Q ss_pred hhhhhHHHHHhhHHHhcCCCc--hhHHHHHHHHHHhcCCHHHHHHHHhcCCC---CCCceeee-----------HHHHHH
Q 040319 348 MEAKLSEQIHGFVMKFGLGSN--DCIEAALLDMLTRCGRMADAEKMFYRWPT---DRDDSIIW-----------TSMICG 411 (812)
Q Consensus 348 ~~~~~a~~i~~~~~~~g~~~~--~~~~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~-----------~~li~~ 411 (812)
-.......++. ...|+..+ +...--+.....+. +...+.+-+..+.. .++ ..+| +.++..
T Consensus 393 ~e~~~~~~i~~--~~qgls~~l~se~tp~vsell~~l-rkns~lr~lv~Lss~Eler~-he~~~~~~h~irdi~~ql~l~ 468 (1088)
T KOG4318|consen 393 IERHICSRIYY--AGQGLSLNLNSEDTPRVSELLENL-RKNSFLRQLVGLSSTELERS-HEPWPLIAHLIRDIANQLHLT 468 (1088)
T ss_pred HHhhHHHHHHH--HHHHHHhhhchhhhHHHHHHHHHh-CcchHHHHHhhhhHHHHhcc-cccchhhhhHHHHHHHHHHHH
Confidence 11110000000 00011000 00000001110000 11111111111110 112 2222 233444
Q ss_pred HHHcCChhhHHHHHHHhcccCCCCCChhhHHHHHHHhcCccchHHHHHHHHHHHH--hCCCCchhHHHHHHHHhhhcCCH
Q 040319 412 YARSGKPEHAILLFHQSQSEATVVPDEIALTSVLGVCGTLGFHEMGKQIHSYALK--TGFSSDLGVANSMVSMYFKCCNM 489 (812)
Q Consensus 412 ~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~--~g~~~~~~~~~~Li~~y~k~g~~ 489 (812)
++..-+..+++..-+.... . .-| ..|..+++-|.....++.|..+.+.... ..+..|..-+..+.+...+.+..
T Consensus 469 l~se~n~lK~l~~~ekye~-~-lf~--g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l 544 (1088)
T KOG4318|consen 469 LNSEYNKLKILCDEEKYED-L-LFA--GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAIL 544 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHH-H-Hhh--hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHH
Confidence 4444444444433322221 1 111 4577888888888888888888877653 23455777788888888888888
Q ss_pred HHHHHHHccCCC-----CC-hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCC----------------------------
Q 040319 490 SNAIKAFNKMPS-----HD-IVSWNGLIAGHLLHRQGDEALAVWSSMEKASI---------------------------- 535 (812)
Q Consensus 490 ~~A~~~f~~~~~-----~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~---------------------------- 535 (812)
.++..++.++.+ |+ ..+.--+.++-+..|+.+...++++-+...|+
T Consensus 545 ~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~etgPl~~vhLrkdd~s~a~ea~e~~~q 624 (1088)
T KOG4318|consen 545 YDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSETGPLWMVHLRKDDQSAAQEAPEPEEQ 624 (1088)
T ss_pred HHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhhcccceEEEeeccchhhhhhcchHHHH
Confidence 888888888875 22 12333455566667777666666665555443
Q ss_pred --CCCHHHHHHHHHHhcCCCCchHHHHHHH------HHHhh---------hhcCcc---------------C--------
Q 040319 536 --KPDAITFVLIISAYRYTNLNLVDSCRKL------FLSMK---------TIYNIE---------------P-------- 575 (812)
Q Consensus 536 --~pd~~t~~~ll~a~~~~~~g~~~~a~~~------~~~m~---------~~~~~~---------------p-------- 575 (812)
+|.......+.....+....+++.+..+ |.+.. +-.|+. |
T Consensus 625 kyk~~P~~~e~lcrlv~ke~td~~qk~mDls~~iq~f~k~g~~~~a~di~etpG~r~r~~RDr~~de~e~~~lEll~elt 704 (1088)
T KOG4318|consen 625 KYKPYPKDLEGLCRLVYKETTDSPQKTMDLSIPIQKFEKLGSCVDAGDITETPGVRCRNGRDRDTDEGEIVPLELLLELT 704 (1088)
T ss_pred HhcCChHHHHHHHHHHHhhccccHHHHHhhcchhHHHHhcccccchhhccccCcccccCCCccccccCccccHHHHHHHH
Confidence 2222222222222211001222222211 11110 001110 0
Q ss_pred -CcchHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHccCCC---CCchHHH
Q 040319 576 -TSEHYASLVSVLGYWGFLEEAEETINNMPFQPKVSVWRALLDSCRIRL---NTTIGKRVAKHILAMEPQ---DPATYIL 648 (812)
Q Consensus 576 -~~~~y~~li~~l~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~p~---~~~~~~~ 648 (812)
+..+..-|...|.+.|+++.|..++.++++.|+.....-|....+.+. ++.++...-+++-++.|. +...|.-
T Consensus 705 ~~lg~~dRLL~sy~~~g~~erA~glwnK~QV~k~~~~l~~LAsIlr~~n~evdvPe~q~e~ekas~~~~~f~ttt~~~~~ 784 (1088)
T KOG4318|consen 705 HELGKNDRLLQSYLEEGRIERASGLWNKDQVSKSPMKLFHLASILRRMNEEVDVPEIQAETEKASELRTLFPTTTCYYEG 784 (1088)
T ss_pred hHhHHHHHHHHHHHhhhHHHHHHhHHhhCcCCcchHHHHHHHHHHHhhchhccchhHHHHHHHHHhcccccccchHhhhh
Confidence 111223466789999999999999999998898888888888877654 566777777777776654 3333444
Q ss_pred HHhhhhhCCCcchHHHHHHHHHhCCCC
Q 040319 649 VSNLYSSSGRWHNSELVREDMREKGFR 675 (812)
Q Consensus 649 l~~~y~~~g~~~~a~~~~~~m~~~g~~ 675 (812)
.+-+..+....+.|.+.+.+..++...
T Consensus 785 ~a~~a~q~~qkkaAkk~f~r~eeq~~v 811 (1088)
T KOG4318|consen 785 YAFFATQTEQKKAAKKCFERLEEQLTV 811 (1088)
T ss_pred hHHHHhhHHHHHHHHHHHHHHHHccCC
Confidence 444444445555788888888877443
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.9e-10 Score=124.66 Aligned_cols=633 Identities=12% Similarity=0.066 Sum_probs=373.0
Q ss_pred cCCchHHHHHHHHHHHhccCCCccchHHHHHHHHccCChhhHHHHHhc---CCCCChhhHHHHHHHHHhcCChhHHHHHH
Q 040319 11 CGEVSLAKAIHASLIKLLLEQDTRFGNPLISAYLKLGHVADAYKIFYG---LSSPNVVSFTSLISGLAKLGREEEAIELF 87 (812)
Q Consensus 11 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~---~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 87 (812)
.|+++.|..++.++++.. +.+...|..|...|-..|+.+++...+-. +...|..-|-.+-.-..+.|++++|.-+|
T Consensus 152 rg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy 230 (895)
T KOG2076|consen 152 RGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCY 230 (895)
T ss_pred hCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHH
Confidence 499999999999999886 56778899999999999999998877643 34556678888888888999999999999
Q ss_pred HHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchHHHHHH----HHHhhhcCCCHHHHHHHHhcCCC
Q 040319 88 FRMRSEGIVPNEHSFVAILTACIRLLELELGFQIHALIVKMGCVDSVFVTNAL----MGLYGKFSFCLDYLLKLFDELPH 163 (812)
Q Consensus 88 ~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l----i~~y~~~g~~~~~a~~~f~~~~~ 163 (812)
.+..+.. +++...+---...|-+.|+...|..-+.++.....+.|..-.-.+ +..|...+ .-+.|.+.++....
T Consensus 231 ~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~-~~e~a~~~le~~~s 308 (895)
T KOG2076|consen 231 SRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHN-ERERAAKALEGALS 308 (895)
T ss_pred HHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHh
Confidence 9988764 344444444456777889999999988888877544443333333 34455556 55777777776553
Q ss_pred -----CCcchHHHHHHHHHcCCChhHHHHHHHHhHhcCCCCCC----------------------cchHH----HHHHHH
Q 040319 164 -----KDTVSWNTVISSVVNEFEYEKAFELFRDMKRDNGFTVD----------------------YFTIS----TLLTAC 212 (812)
Q Consensus 164 -----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd----------------------~~t~~----~ll~~~ 212 (812)
-+...+|.++..|.+...++.|......+ ......+| ...|. -+.-++
T Consensus 309 ~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~-~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL 387 (895)
T KOG2076|consen 309 KEKDEASLEDLNILAELFLKNKQSDKALMKIVDD-RNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICL 387 (895)
T ss_pred hccccccccHHHHHHHHHHHhHHHHHhhHHHHHH-hccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhh
Confidence 35567888999999999999999988887 44111121 11111 122223
Q ss_pred hcCCChHHHHHHHHHHHHhC--CCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC----CcchhHHHHHHHHHhhCChhH
Q 040319 213 TGCFVLMEGRAVHAHAIRIG--LGANLSVNNALIGFYTKCGRVKDVVALLERMPV----MDIITLTEIIIAYMEFGYVDL 286 (812)
Q Consensus 213 ~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~----~~~~~~~~li~~~~~~g~~~~ 286 (812)
......+....+.....+.. ..-+...|.-+.++|...|++.+|.++|..+.. .+...|-.+..+|...|..++
T Consensus 388 ~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~ 467 (895)
T KOG2076|consen 388 VHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEE 467 (895)
T ss_pred hcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHH
Confidence 44555555666666666666 344567788888999999999999999888753 356788888999999999999
Q ss_pred HHHHhccCCCCCcccHH---HHHHHHHhCCChHHHHHHHHHHHHc--------CCCCCHhHHHHHHHHhccchhhhhHHH
Q 040319 287 AVEIFDKMPEKNSVSYN---ALLAGYCKNGKAMEALGLFVKLLEE--------GLVLTEFTLTSVVNACGLIMEAKLSEQ 355 (812)
Q Consensus 287 A~~~f~~m~~~d~~~~~---~li~~~~~~g~~~~A~~l~~~m~~~--------g~~p~~~t~~~ll~a~~~~~~~~~a~~ 355 (812)
|.+.|+....-++...+ .|-..+.+.|+.++|++.+..+... +..|+..........+.+.|+.++=..
T Consensus 468 A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~ 547 (895)
T KOG2076|consen 468 AIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFIN 547 (895)
T ss_pred HHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 99988888764444333 4556788889999998888886521 122222222222222333333333222
Q ss_pred HHhhHHHhcCCCchhHHHHHHHHHHhcCCH----HHHHHHHhcCCCCCCceeeeHHHHHHHHHcCChhhHHH------HH
Q 040319 356 IHGFVMKFGLGSNDCIEAALLDMLTRCGRM----ADAEKMFYRWPTDRDDSIIWTSMICGYARSGKPEHAIL------LF 425 (812)
Q Consensus 356 i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~----~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~------~~ 425 (812)
+-.. |++.+.+...+ .+++..-..-...+-...+.-.++.+-.+.++...... .+
T Consensus 548 t~~~---------------Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~ 612 (895)
T KOG2076|consen 548 TAST---------------LVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEF 612 (895)
T ss_pred HHHH---------------HHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhh
Confidence 2222 22211111000 00000000000000001112222333222222111111 11
Q ss_pred HHhcccCCCCCChh--hHHHHHHHhcCccchHHHHHHHHHHHHhCC--CCch---hHHHHHHHHhhhcCCHHHHHHHHcc
Q 040319 426 HQSQSEATVVPDEI--ALTSVLGVCGTLGFHEMGKQIHSYALKTGF--SSDL---GVANSMVSMYFKCCNMSNAIKAFNK 498 (812)
Q Consensus 426 ~~m~~~~g~~p~~~--t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~--~~~~---~~~~~Li~~y~k~g~~~~A~~~f~~ 498 (812)
..-.. .++.-+.. -+.-++.+.++.+.+++|..+...+..... .++. ..-...+.+....+++..|...++.
T Consensus 613 ~~~e~-~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~ 691 (895)
T KOG2076|consen 613 RAVEL-RGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRS 691 (895)
T ss_pred hhhhh-ccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 11111 22222221 234455566777777777777776665431 1221 2234445556667778888777766
Q ss_pred CCCC-----C---hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCchHHHHHHHHHHhhhh
Q 040319 499 MPSH-----D---IVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDAITFVLIISAYRYTNLNLVDSCRKLFLSMKTI 570 (812)
Q Consensus 499 ~~~~-----~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~ 570 (812)
|... + ...||...+...+.|+-.--..++..... ..|+......++.+-.....+.+..|..++-....
T Consensus 692 ~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~--~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~- 768 (895)
T KOG2076|consen 692 VITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLV--KNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFR- 768 (895)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cCccCCcceeeeechhHhhccchHHHHHHHHHHHH-
Confidence 6542 3 24677666666666554444444433332 33333111111111000014556677766554443
Q ss_pred cCccCCcchHH-HHHHHH----------hhcCChHHHHHHHHhCC-C-CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 040319 571 YNIEPTSEHYA-SLVSVL----------GYWGFLEEAEETINNMP-F-QP--KVSVWRALLDSCRIRLNTTIGKRVAKHI 635 (812)
Q Consensus 571 ~~~~p~~~~y~-~li~~l----------~~~g~~~~A~~~~~~m~-~-~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 635 (812)
..|+...++ ||.-++ .|.-.+-+++.++++-. . .+ ..-++-.+..+|..-|-+..|...++++
T Consensus 769 --~~pd~Pl~nl~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekv 846 (895)
T KOG2076|consen 769 --QNPDSPLINLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKV 846 (895)
T ss_pred --hCCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 356633333 222222 12223445555554432 1 22 3456778899999999999999999999
Q ss_pred HccCCCCC------------chHHHHHhhhhhCCCcchHHHHHHH
Q 040319 636 LAMEPQDP------------ATYILVSNLYSSSGRWHNSELVRED 668 (812)
Q Consensus 636 ~~~~p~~~------------~~~~~l~~~y~~~g~~~~a~~~~~~ 668 (812)
+++.|.+. .+-..|.-||-.+|+..-|.++.++
T Consensus 847 L~~~p~~~~~~~~d~~dLrkeAA~NL~LIY~~SGn~~lArqil~k 891 (895)
T KOG2076|consen 847 LEVSPKDVTDPKEDNYDLRKEAAYNLHLIYKKSGNMQLARQILEK 891 (895)
T ss_pred hCCCccccccccCCcccHHHHHHhhhhhhhccCCcHHHHHHHHHh
Confidence 99976532 2344678899999999999988764
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.8e-11 Score=130.98 Aligned_cols=516 Identities=13% Similarity=0.133 Sum_probs=341.9
Q ss_pred hhhcCCCHHHHHHHHhcCCC---CCcchHHHHHHHHHcCCChhHHHHHHHHhHhcCCCCCCcchHHHHHHHHhcCCChHH
Q 040319 144 YGKFSFCLDYLLKLFDELPH---KDTVSWNTVISSVVNEFEYEKAFELFRDMKRDNGFTVDYFTISTLLTACTGCFVLME 220 (812)
Q Consensus 144 y~~~g~~~~~a~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~~~~~~ 220 (812)
+++ | ++++|.+++.++.. ++...|-+|...|-+.|+.++++..+-.. .+-.+-|..-|..+-.-..+.|.+++
T Consensus 150 far-g-~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llA--AHL~p~d~e~W~~ladls~~~~~i~q 225 (895)
T KOG2076|consen 150 FAR-G-DLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLA--AHLNPKDYELWKRLADLSEQLGNINQ 225 (895)
T ss_pred HHh-C-CHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHH--HhcCCCChHHHHHHHHHHHhcccHHH
Confidence 444 8 89999999988764 57789999999999999999998877544 22233455677788888889999999
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCcc--------hhHHHHHHHHHhhCChhHHHHHhc
Q 040319 221 GRAVHAHAIRIGLGANLSVNNALIGFYTKCGRVKDVVALLERMPVMDI--------ITLTEIIIAYMEFGYVDLAVEIFD 292 (812)
Q Consensus 221 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~--------~~~~~li~~~~~~g~~~~A~~~f~ 292 (812)
|.-.+..+++.. +++....---..+|-+.|+...|..-|.++-+.+. .+-..+++.+...++-+.|.+.++
T Consensus 226 A~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le 304 (895)
T KOG2076|consen 226 ARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALE 304 (895)
T ss_pred HHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 999999999876 44444444456789999999999988887743322 223335667778888899998888
Q ss_pred cCCC--C---CcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHh----------------------HH----HHHH
Q 040319 293 KMPE--K---NSVSYNALLAGYCKNGKAMEALGLFVKLLEEGLVLTEF----------------------TL----TSVV 341 (812)
Q Consensus 293 ~m~~--~---d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~----------------------t~----~~ll 341 (812)
.... . +...++.++..|.+...++.|......+......+|.. .| .-+.
T Consensus 305 ~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~ 384 (895)
T KOG2076|consen 305 GALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLM 384 (895)
T ss_pred HHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHh
Confidence 7664 2 34468899999999999999999988887722222221 11 1223
Q ss_pred HHhccchhhhhHHHHHhhHHHhc--CCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCC--CceeeeHHHHHHHHHcCC
Q 040319 342 NACGLIMEAKLSEQIHGFVMKFG--LGSNDCIEAALLDMLTRCGRMADAEKMFYRWPTDR--DDSIIWTSMICGYARSGK 417 (812)
Q Consensus 342 ~a~~~~~~~~~a~~i~~~~~~~g--~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~--~~~~~~~~li~~~~~~g~ 417 (812)
-++.+....+....+...+.... +.-+...+.-+.++|...|++.+|.++|..+.... .+...|--+..+|...|.
T Consensus 385 icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e 464 (895)
T KOG2076|consen 385 ICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGE 464 (895)
T ss_pred hhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhh
Confidence 34456666777777777777777 44567788899999999999999999999987332 236689999999999999
Q ss_pred hhhHHHHHHHhcccCCCCCChhh-HHHHHHHhcCccchHHHHHHHHHHH--------HhCCCCchhHHHHHHHHhhhcCC
Q 040319 418 PEHAILLFHQSQSEATVVPDEIA-LTSVLGVCGTLGFHEMGKQIHSYAL--------KTGFSSDLGVANSMVSMYFKCCN 488 (812)
Q Consensus 418 ~~~A~~~~~~m~~~~g~~p~~~t-~~~ll~a~~~~~~~~~a~~~~~~~~--------~~g~~~~~~~~~~Li~~y~k~g~ 488 (812)
+++|++.|..... ..|+..- -.++-..+..+|+.++|.+.+..+. ..+..|+..+.--..+.|.+.|+
T Consensus 465 ~e~A~e~y~kvl~---~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk 541 (895)
T KOG2076|consen 465 YEEAIEFYEKVLI---LAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGK 541 (895)
T ss_pred HHHHHHHHHHHHh---cCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhh
Confidence 9999999999987 6676653 2344456678899999999888743 34456677777777888899998
Q ss_pred HHHHHHHHccCCC---------C-----------------ChhHHHHHHHHHHhcCChHHHHH------HHHHHHHCCCC
Q 040319 489 MSNAIKAFNKMPS---------H-----------------DIVSWNGLIAGHLLHRQGDEALA------VWSSMEKASIK 536 (812)
Q Consensus 489 ~~~A~~~f~~~~~---------~-----------------~~~~~~~li~~~~~~g~~~~A~~------l~~~m~~~g~~ 536 (812)
.++=..+-..|.. | +...-..++.+-.+.++.....+ .+.--...|+.
T Consensus 542 ~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Ls 621 (895)
T KOG2076|consen 542 REEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLS 621 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCc
Confidence 8875444333321 1 11111122222222222111110 01111112222
Q ss_pred CCH--HHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCCcc----hHHHHHHHHhhcCChHHHHHHHHhCC------
Q 040319 537 PDA--ITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTSE----HYASLVSVLGYWGFLEEAEETINNMP------ 604 (812)
Q Consensus 537 pd~--~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~----~y~~li~~l~~~g~~~~A~~~~~~m~------ 604 (812)
-+. .-|.-++.+..+ .+.+++|..+...+...+-+.-+.. .-.+++.+....+++.+|.+.++.|.
T Consensus 622 iddwfel~~e~i~~L~k--~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~ 699 (895)
T KOG2076|consen 622 IDDWFELFRELILSLAK--LQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFY 699 (895)
T ss_pred HHHHHHHHHHHHHHHHH--HHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhh
Confidence 222 223444445555 7777888777776665333332222 23455566667777888877777764
Q ss_pred CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCC-CchHHHHHhhhhhCCCcchHHHHHHHH
Q 040319 605 FQP-KVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQD-PATYILVSNLYSSSGRWHNSELVREDM 669 (812)
Q Consensus 605 ~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~y~~~g~~~~a~~~~~~m 669 (812)
..| -...|+..++....+++-.--.+...+++...|++ +..+...+......|.|..|...+-+.
T Consensus 700 ~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra 766 (895)
T KOG2076|consen 700 LDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRA 766 (895)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHH
Confidence 133 24466666666666666555556666666666666 555556666777777777777755443
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.3e-09 Score=110.76 Aligned_cols=459 Identities=11% Similarity=0.005 Sum_probs=283.0
Q ss_pred HHcCCChhHHHHHHHHhHhcCCCCCCcchHHHHHHHHhcCCChHHHHHHHHHHH----HhCCCCchhHHHHHHHHHHhcC
Q 040319 176 VVNEFEYEKAFELFRDMKRDNGFTVDYFTISTLLTACTGCFVLMEGRAVHAHAI----RIGLGANLSVNNALIGFYTKCG 251 (812)
Q Consensus 176 ~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~----~~g~~~~~~~~~~li~~~~~~g 251 (812)
|++..-++.|..++... + ..++-|...|.+....=-..|+.+....+.+..+ ..|+..+..-|-.=...+-+.|
T Consensus 416 larLetYenAkkvLNka-R-e~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~ag 493 (913)
T KOG0495|consen 416 LARLETYENAKKVLNKA-R-EIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAG 493 (913)
T ss_pred HHHHHHHHHHHHHHHHH-H-hhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcC
Confidence 33444455666666655 2 2344555555554444445555555555554433 3344544444444444444444
Q ss_pred ChHHHHHHHhcCC-----CC-cchhHHHHHHHHHhhCChhHHHHHhccCCC---CCcccHHHHHHHHHhCCChHHHHHHH
Q 040319 252 RVKDVVALLERMP-----VM-DIITLTEIIIAYMEFGYVDLAVEIFDKMPE---KNSVSYNALLAGYCKNGKAMEALGLF 322 (812)
Q Consensus 252 ~~~~A~~l~~~~~-----~~-~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~A~~l~ 322 (812)
.+-.+..+..... +. --.||+.-...|.+.+.++-|..+|....+ .+...|......--..|..++-..+|
T Consensus 494 sv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~All 573 (913)
T KOG0495|consen 494 SVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALL 573 (913)
T ss_pred ChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHH
Confidence 4444443333221 00 113344444444444444444444443332 22334444444434444555555555
Q ss_pred HHHHHcCCCCCHhHHHHHHHHhccchhhhhHHHHHhhHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC-CCCc
Q 040319 323 VKLLEEGLVLTEFTLTSVVNACGLIMEAKLSEQIHGFVMKFGLGSNDCIEAALLDMLTRCGRMADAEKMFYRWPT-DRDD 401 (812)
Q Consensus 323 ~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~-~~~~ 401 (812)
++....- | -....+-....-+-..|++..|+.++.+.-. .+++
T Consensus 574 qkav~~~--p----------------------------------kae~lwlM~ake~w~agdv~~ar~il~~af~~~pns 617 (913)
T KOG0495|consen 574 QKAVEQC--P----------------------------------KAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNS 617 (913)
T ss_pred HHHHHhC--C----------------------------------cchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCc
Confidence 5554431 1 1122222233334455677777666655431 2334
Q ss_pred eeeeHHHHHHHHHcCChhhHHHHHHHhcccCCCCCChhhHHHHHHHhcCccchHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 040319 402 SIIWTSMICGYARSGKPEHAILLFHQSQSEATVVPDEIALTSVLGVCGTLGFHEMGKQIHSYALKTGFSSDLGVANSMVS 481 (812)
Q Consensus 402 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~ 481 (812)
...|-+-+..-..+..+++|..+|.+.+. ..|+...|.--+..--.++..++|.++++..++. ++.-...|-.+..
T Consensus 618 eeiwlaavKle~en~e~eraR~llakar~---~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQ 693 (913)
T KOG0495|consen 618 EEIWLAAVKLEFENDELERARDLLAKARS---ISGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQ 693 (913)
T ss_pred HHHHHHHHHHhhccccHHHHHHHHHHHhc---cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhH
Confidence 56677777777777778888888777765 5566666655555555567777888887777763 3444567777788
Q ss_pred HhhhcCCHHHHHHHHccCCC--CCh-hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcCCCCchH
Q 040319 482 MYFKCCNMSNAIKAFNKMPS--HDI-VSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDA-ITFVLIISAYRYTNLNLV 557 (812)
Q Consensus 482 ~y~k~g~~~~A~~~f~~~~~--~~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~~~g~~ 557 (812)
.|-..++++.|+..|..=.. |+. ..|-.|...--+.|..-.|..++++.+. -.|+. ..|...+..=.+ .|..
T Consensus 694 i~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarl--kNPk~~~lwle~Ir~ElR--~gn~ 769 (913)
T KOG0495|consen 694 IEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARL--KNPKNALLWLESIRMELR--AGNK 769 (913)
T ss_pred HHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHh--cCCCcchhHHHHHHHHHH--cCCH
Confidence 88888888888887765444 543 4666666666777888888888888877 34544 566667776666 8888
Q ss_pred HHHHHHHHHhhhhcCccCCcchHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHc
Q 040319 558 DSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLEEAEETINNMPFQPKVSVWRALLDSCRIRLNTTIGKRVAKHILA 637 (812)
Q Consensus 558 ~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 637 (812)
+.|..+..+..++ .+.+-..|.--|.+..+.++-..+.+.+++-. -|+.+.-++...+.....++.|...++++++
T Consensus 770 ~~a~~lmakALQe--cp~sg~LWaEaI~le~~~~rkTks~DALkkce--~dphVllaia~lfw~e~k~~kar~Wf~Ravk 845 (913)
T KOG0495|consen 770 EQAELLMAKALQE--CPSSGLLWAEAIWLEPRPQRKTKSIDALKKCE--HDPHVLLAIAKLFWSEKKIEKAREWFERAVK 845 (913)
T ss_pred HHHHHHHHHHHHh--CCccchhHHHHHHhccCcccchHHHHHHHhcc--CCchhHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 8888887777653 44456778888888888888777777777764 4555555666677788889999999999999
Q ss_pred cCCCCCchHHHHHhhhhhCCCcchHHHHHHHHHhCCCCCCCceeEEEEC
Q 040319 638 MEPQDPATYILVSNLYSSSGRWHNSELVREDMREKGFRKHPSRSWIIHQ 686 (812)
Q Consensus 638 ~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~ 686 (812)
.+|++..++..+-..+...|.-++-.+++++.... ++.-|..|..+.
T Consensus 846 ~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~--EP~hG~~W~avS 892 (913)
T KOG0495|consen 846 KDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETA--EPTHGELWQAVS 892 (913)
T ss_pred cCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhcc--CCCCCcHHHHHh
Confidence 99999999999999999999999999999987653 334477786543
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.3e-11 Score=130.80 Aligned_cols=538 Identities=12% Similarity=0.025 Sum_probs=294.1
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHhhhcCCCHHHHHHHHhcCCCC
Q 040319 85 ELFFRMRSEGIVPNEHSFVAILTACIRLLELELGFQIHALIVKMGCVDSVFVTNALMGLYGKFSFCLDYLLKLFDELPHK 164 (812)
Q Consensus 85 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~~a~~~f~~~~~~ 164 (812)
.++..|...|+.|+..||.+++..|+..|+++.|- ++..|.-........+++.++......+ +.+.+. +|
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~An-d~Enpk-------ep 81 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEAN-DAENPK-------EP 81 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccc-cccCCC-------CC
Confidence 35566777888888888888888888888888887 8888887777777788888888877777 666555 67
Q ss_pred CcchHHHHHHHHHcCCChhHHHHHHHH-hHhcCCCCCCcchHHHHHHHHhcCCChHHHHHHHHHHHH-hCCCCchhHHHH
Q 040319 165 DTVSWNTVISSVVNEFEYEKAFELFRD-MKRDNGFTVDYFTISTLLTACTGCFVLMEGRAVHAHAIR-IGLGANLSVNNA 242 (812)
Q Consensus 165 ~~~~~~~li~~~~~~g~~~~A~~l~~~-m~~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~-~g~~~~~~~~~~ 242 (812)
...+|..|..+|.+.||... ++..++ | ..+...+...|.......++-.+.- -+.-||.. .
T Consensus 82 ~aDtyt~Ll~ayr~hGDli~-fe~veqdL-------------e~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~---n 144 (1088)
T KOG4318|consen 82 LADTYTNLLKAYRIHGDLIL-FEVVEQDL-------------ESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE---N 144 (1088)
T ss_pred chhHHHHHHHHHHhccchHH-HHHHHHHH-------------HHHHhhhhhhccCcHHHHHHhhcccCcccchhHH---H
Confidence 77888888888888888765 222222 2 1222223333333222222222111 12233332 2
Q ss_pred HHHHHHhcCChHHHHHHHhcCCCCcch-hHHHHHHHHHh-hCChhHHHHHhccCCC-CCcccHHHHHHHHHhCCChHHHH
Q 040319 243 LIGFYTKCGRVKDVVALLERMPVMDII-TLTEIIIAYME-FGYVDLAVEIFDKMPE-KNSVSYNALLAGYCKNGKAMEAL 319 (812)
Q Consensus 243 li~~~~~~g~~~~A~~l~~~~~~~~~~-~~~~li~~~~~-~g~~~~A~~~f~~m~~-~d~~~~~~li~~~~~~g~~~~A~ 319 (812)
++....-.|-++.+.+++..++..... +...+++-... ...+++-........+ ++..++.+++..-..+|+.+.|.
T Consensus 145 ~illlv~eglwaqllkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak 224 (1088)
T KOG4318|consen 145 AILLLVLEGLWAQLLKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAK 224 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHH
Confidence 233334456666666666666522110 11111222111 1223444444444444 88899999999999999999999
Q ss_pred HHHHHHHHcCCCCCHhHHHHHHHHhccchhhhhHHHHHhhHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCC
Q 040319 320 GLFVKLLEEGLVLTEFTLTSVVNACGLIMEAKLSEQIHGFVMKFGLGSNDCIEAALLDMLTRCGRMADAEKMFYRWPTDR 399 (812)
Q Consensus 320 ~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~ 399 (812)
.++.+|.+.|+..+..-|-.++-+ .++......+..-|...|+.|+..++.--+....+.|....+.... +
T Consensus 225 ~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~s------q 295 (1088)
T KOG4318|consen 225 NLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGS------Q 295 (1088)
T ss_pred HHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhccccc------c
Confidence 999999999999999888888766 7778888888888999999999999887776666655533222211 1
Q ss_pred CceeeeHHHHHHHHHcCChhhHHHHHH------------HhcccCCCCCChhhHHHHHHHhcCccchHHHHHHHHHHHHh
Q 040319 400 DDSIIWTSMICGYARSGKPEHAILLFH------------QSQSEATVVPDEIALTSVLGVCGTLGFHEMGKQIHSYALKT 467 (812)
Q Consensus 400 ~~~~~~~~li~~~~~~g~~~~A~~~~~------------~m~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~ 467 (812)
. ...+++-...-+-.| ..|.+.++ +-.- .|+.-....|.... -...+|.-+...++.+.+..-
T Consensus 296 ~-~hg~tAavrsaa~rg--~~a~k~l~~nl~~~v~~s~k~~fL-lg~d~~~aiws~c~-~l~hQgk~e~veqlvg~l~np 370 (1088)
T KOG4318|consen 296 L-AHGFTAAVRSAACRG--LLANKRLRQNLRKSVIGSTKKLFL-LGTDILEAIWSMCE-KLRHQGKGEEVEQLVGQLLNP 370 (1088)
T ss_pred h-hhhhhHHHHHHHhcc--cHhHHHHHHHHHHHHHHHhhHHHH-hccccchHHHHHHH-HHHHcCCCchHHHHHhhhcCC
Confidence 1 112222222222222 22222221 1111 12222222222111 111244444555554444321
Q ss_pred CCCCchhHHHHHHHHhhhcCCHHHHHHHHccCCCCChhHHHHHHHHHHh---cCChHHHHHHHHHHHHCCCCCCH-----
Q 040319 468 GFSSDLGVANSMVSMYFKCCNMSNAIKAFNKMPSHDIVSWNGLIAGHLL---HRQGDEALAVWSSMEKASIKPDA----- 539 (812)
Q Consensus 468 g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~pd~----- 539 (812)
-+ ..-+.-+++|. +.+.+.|.++..+....-.-.-.+... ..+..+..++... ..||.
T Consensus 371 t~----r~s~~~V~a~~-----~~lrqyFrr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~-----lrkns~lr~l 436 (1088)
T KOG4318|consen 371 TL----RDSGQNVDAFG-----ALLRQYFRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLEN-----LRKNSFLRQL 436 (1088)
T ss_pred cc----ccCcchHHHHH-----HHHHHHHHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHH-----hCcchHHHHH
Confidence 11 11111111111 223444444444322111111111111 1111111111111 12221
Q ss_pred -----------------------HHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCCcchHHHHHHHHhhcCChHHH
Q 040319 540 -----------------------ITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLEEA 596 (812)
Q Consensus 540 -----------------------~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A 596 (812)
..-+.++..|.. .-+..++...-+.... +-+ ...|..||+.+.+..++++|
T Consensus 437 v~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~s--e~n~lK~l~~~ekye~-~lf---~g~ya~Li~l~~~hdkle~A 510 (1088)
T KOG4318|consen 437 VGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNS--EYNKLKILCDEEKYED-LLF---AGLYALLIKLMDLHDKLEYA 510 (1088)
T ss_pred hhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH-HHh---hhHHHHHhhhHHHHHHHHHH
Confidence 111222223322 2223333322222211 111 26788999999999999999
Q ss_pred HHHHHhCC-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHc---cCCCCCchHHHHHhhhhhCCCcchHHHHHHH
Q 040319 597 EETINNMP-----FQPKVSVWRALLDSCRIRLNTTIGKRVAKHILA---MEPQDPATYILVSNLYSSSGRWHNSELVRED 668 (812)
Q Consensus 597 ~~~~~~m~-----~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~ 668 (812)
..+..+.. +.-|..-+..+.+...+++.+..+..+.+...+ ..|........+-|-.+..|+-+...++.+-
T Consensus 511 l~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~ 590 (1088)
T KOG4318|consen 511 LSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADI 590 (1088)
T ss_pred HhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHH
Confidence 99988865 233555667777777888888777777666554 3344445566777778888888888888888
Q ss_pred HHhCCCCCCCceeEE
Q 040319 669 MREKGFRKHPSRSWI 683 (812)
Q Consensus 669 m~~~g~~~~~~~s~~ 683 (812)
+...|+.. .|.-|.
T Consensus 591 lvslgl~e-tgPl~~ 604 (1088)
T KOG4318|consen 591 LVSLGLSE-TGPLWM 604 (1088)
T ss_pred HHHhhhhh-cccceE
Confidence 88777755 354453
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.2e-13 Score=141.75 Aligned_cols=213 Identities=15% Similarity=0.140 Sum_probs=105.3
Q ss_pred CccchHHHHHHHHHHHHhCCCCchhHHHHHHHHhhhcCCHHHHHHHHccCCC--CChhHHHHHHHHHHhcCChHHHHHHH
Q 040319 450 TLGFHEMGKQIHSYALKTGFSSDLGVANSMVSMYFKCCNMSNAIKAFNKMPS--HDIVSWNGLIAGHLLHRQGDEALAVW 527 (812)
Q Consensus 450 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~ 527 (812)
..++.+.|...++.+...+-. ++..+..++.. ...+++++|.+++...-+ ++...|..++..+...|+++++.+++
T Consensus 56 ~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l 133 (280)
T PF13429_consen 56 SLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELL 133 (280)
T ss_dssp ----------------------------------------------------------------H-HHHTT-HHHHHHHH
T ss_pred ccccccccccccccccccccc-ccccccccccc-cccccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHH
Confidence 344555555555555443322 34445556655 577788888877766533 56667777788888888888888888
Q ss_pred HHHHHCCC-CCCHHHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCC-cchHHHHHHHHhhcCChHHHHHHHHhCC-
Q 040319 528 SSMEKASI-KPDAITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPT-SEHYASLVSVLGYWGFLEEAEETINNMP- 604 (812)
Q Consensus 528 ~~m~~~g~-~pd~~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g~~~~A~~~~~~m~- 604 (812)
++.....- .++...|..+...+.. .|+.++|.+.++...+ ..|+ ......++.++...|+.+++.++++...
T Consensus 134 ~~~~~~~~~~~~~~~~~~~a~~~~~--~G~~~~A~~~~~~al~---~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~ 208 (280)
T PF13429_consen 134 EKLEELPAAPDSARFWLALAEIYEQ--LGDPDKALRDYRKALE---LDPDDPDARNALAWLLIDMGDYDEAREALKRLLK 208 (280)
T ss_dssp HHHHH-T---T-HHHHHHHHHHHHH--CCHHHHHHHHHHHHHH---H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHhccCCCCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 88775332 2344555556666667 8888888888888876 4565 6778888888888888888777776654
Q ss_pred -CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCCcchHHHHHHHH
Q 040319 605 -FQPKVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWHNSELVREDM 669 (812)
Q Consensus 605 -~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 669 (812)
.++|+..|..+..++...|+.+.|...++++++..|+|+.....++++|...|+.++|.+++.+.
T Consensus 209 ~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 209 AAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp H-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT---------------
T ss_pred HCcCHHHHHHHHHHHhcccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 24466788999999999999999999999999999999999999999999999999999998775
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.44 E-value=4.4e-08 Score=102.59 Aligned_cols=578 Identities=12% Similarity=0.043 Sum_probs=391.6
Q ss_pred cCCchHHHHHHHHHHHhccCCCccchHHHHHHHHccCChhhHHHHHhcCC---CCChhhH------------HHHHHH--
Q 040319 11 CGEVSLAKAIHASLIKLLLEQDTRFGNPLISAYLKLGHVADAYKIFYGLS---SPNVVSF------------TSLISG-- 73 (812)
Q Consensus 11 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~------------~~li~~-- 73 (812)
.+++..|+.++....+..+ .++..|-+-.+.=-..|++..|+.+..+-- .++...| -++|.-
T Consensus 264 l~DikKaR~llKSvretnP-~hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~cprSeDvWLeaiRLhp~d~aK~vvA~Av 342 (913)
T KOG0495|consen 264 LEDIKKARLLLKSVRETNP-KHPPGWIASARLEEVAGKLSVARNLIMKGCEECPRSEDVWLEAIRLHPPDVAKTVVANAV 342 (913)
T ss_pred HHHHHHHHHHHHHHHhcCC-CCCchHHHHHHHHHHhhHHHHHHHHHHHHHhhCCchHHHHHHHHhcCChHHHHHHHHHHH
Confidence 4577888888888888773 233344333333345677777777774321 1111112 111111
Q ss_pred ---------HHhcCCh----hHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchHHHHHH
Q 040319 74 ---------LAKLGRE----EEAIELFFRMRSEGIVPNEHSFVAILTACIRLLELELGFQIHALIVKMGCVDSVFVTNAL 140 (812)
Q Consensus 74 ---------~~~~g~~----~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 140 (812)
+++.-+. ..-.+++++.++. .|+.+ .|-++.....+.+.|.-++...++.- +.+.. |
T Consensus 343 r~~P~Sv~lW~kA~dLE~~~~~K~RVlRKALe~--iP~sv---~LWKaAVelE~~~darilL~rAvecc-p~s~d----L 412 (913)
T KOG0495|consen 343 RFLPTSVRLWLKAADLESDTKNKKRVLRKALEH--IPRSV---RLWKAAVELEEPEDARILLERAVECC-PQSMD----L 412 (913)
T ss_pred HhCCCChhhhhhHHhhhhHHHHHHHHHHHHHHh--CCchH---HHHHHHHhccChHHHHHHHHHHHHhc-cchHH----H
Confidence 1111111 1222334444432 23322 13344455566666777777776652 22222 4
Q ss_pred HHHhhhcCCCHHHHHHHHhcCC---CCCcchHHHHHHHHHcCCChhHHHHHHHHhH---hcCCCCCCcchHHHHHHHHhc
Q 040319 141 MGLYGKFSFCLDYLLKLFDELP---HKDTVSWNTVISSVVNEFEYEKAFELFRDMK---RDNGFTVDYFTISTLLTACTG 214 (812)
Q Consensus 141 i~~y~~~g~~~~~a~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~---~~~g~~pd~~t~~~ll~~~~~ 214 (812)
.-+|++.. .++.|++++.... ..+...|-+-...=-.+|+.+...++..+-. +..|+..+...|..=..+|-.
T Consensus 413 wlAlarLe-tYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~ 491 (913)
T KOG0495|consen 413 WLALARLE-TYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACED 491 (913)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhh
Confidence 44566666 7888888887654 4577888877777778899888888875431 677999999999888889999
Q ss_pred CCChHHHHHHHHHHHHhCCCCc--hhHHHHHHHHHHhcCChHHHHHHHhcCCC---CcchhHHHHHHHHHhhCChhHHHH
Q 040319 215 CFVLMEGRAVHAHAIRIGLGAN--LSVNNALIGFYTKCGRVKDVVALLERMPV---MDIITLTEIIIAYMEFGYVDLAVE 289 (812)
Q Consensus 215 ~~~~~~a~~~~~~~~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~l~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~ 289 (812)
.|..-.+..+....+..|++.. ..+|+.-...|.+.+.++-|+.+|....+ .+...|...+..=-..|..++-..
T Consensus 492 agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~A 571 (913)
T KOG0495|consen 492 AGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEA 571 (913)
T ss_pred cCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHH
Confidence 9999999999999998887543 56888888999999999999999987753 355778777777777899999999
Q ss_pred HhccCCC---CCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHhccchhhhhHHHHHhhHHHhcCC
Q 040319 290 IFDKMPE---KNSVSYNALLAGYCKNGKAMEALGLFVKLLEEGLVLTEFTLTSVVNACGLIMEAKLSEQIHGFVMKFGLG 366 (812)
Q Consensus 290 ~f~~m~~---~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~ 366 (812)
+|++... ...+.|-...+-+-..|+...|..++....+.... +
T Consensus 572 llqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-s--------------------------------- 617 (913)
T KOG0495|consen 572 LLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-S--------------------------------- 617 (913)
T ss_pred HHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-c---------------------------------
Confidence 9988764 34556777777888889999999888887765322 2
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCCceeeeHHHHHHHHHcCChhhHHHHHHHhcccCCCCCChh-hHHHHH
Q 040319 367 SNDCIEAALLDMLTRCGRMADAEKMFYRWPTDRDDSIIWTSMICGYARSGKPEHAILLFHQSQSEATVVPDEI-ALTSVL 445 (812)
Q Consensus 367 ~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~-t~~~ll 445 (812)
..++-+-+........++.|+.+|.+.....++...|.--+..---.++.++|++++++..+ .-|+-. .|..+-
T Consensus 618 --eeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk---~fp~f~Kl~lmlG 692 (913)
T KOG0495|consen 618 --EEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALK---SFPDFHKLWLMLG 692 (913)
T ss_pred --HHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHH---hCCchHHHHHHHh
Confidence 22333334444555666666666665553334355555555555556677777777766665 445544 333444
Q ss_pred HHhcCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHhhhcCCHHHHHHHHccCCC---CChhHHHHHHHHHHhcCChHH
Q 040319 446 GVCGTLGFHEMGKQIHSYALKTGFSSDLGVANSMVSMYFKCCNMSNAIKAFNKMPS---HDIVSWNGLIAGHLLHRQGDE 522 (812)
Q Consensus 446 ~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~ 522 (812)
+.+-+.++++.|+..+..-.+. .+..+..|-.|...=-+.|.+-.|+.+|++..- .|...|-..|..-.+.|..+.
T Consensus 693 Qi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~ 771 (913)
T KOG0495|consen 693 QIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQ 771 (913)
T ss_pred HHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHH
Confidence 5556666666666665544432 344667788888888899999999999987654 567899999999999999999
Q ss_pred HHHHHHHHHHCCCCCCH-HHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCCcchHHHHHHHHhhcCChHHHHHHHH
Q 040319 523 ALAVWSSMEKASIKPDA-ITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLEEAEETIN 601 (812)
Q Consensus 523 A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~ 601 (812)
|..+..+.++ --|+. ..|..-|-...+ .+.-......++. .+-|+...-.+..++-...+++.|.+.|.
T Consensus 772 a~~lmakALQ--ecp~sg~LWaEaI~le~~--~~rkTks~DALkk------ce~dphVllaia~lfw~e~k~~kar~Wf~ 841 (913)
T KOG0495|consen 772 AELLMAKALQ--ECPSSGLLWAEAIWLEPR--PQRKTKSIDALKK------CEHDPHVLLAIAKLFWSEKKIEKAREWFE 841 (913)
T ss_pred HHHHHHHHHH--hCCccchhHHHHHHhccC--cccchHHHHHHHh------ccCCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998888 34544 666666655555 4443333333332 34566777788888889999999999999
Q ss_pred hCC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHH
Q 040319 602 NMP-FQPK-VSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVS 650 (812)
Q Consensus 602 ~m~-~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 650 (812)
+.. ..|| ..+|--+..-+..||.-+.-..++.+...-+|.....+...+
T Consensus 842 Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~hG~~W~avS 892 (913)
T KOG0495|consen 842 RAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTHGELWQAVS 892 (913)
T ss_pred HHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCcHHHHHh
Confidence 865 6675 568888999999999999999999999999998776665544
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.42 E-value=6.6e-11 Score=117.65 Aligned_cols=457 Identities=15% Similarity=0.106 Sum_probs=253.9
Q ss_pred hHHHHHHHHccCChhhHHHHHhcCCC----CChhhH-HHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhh----HHHHH
Q 040319 36 GNPLISAYLKLGHVADAYKIFYGLSS----PNVVSF-TSLISGLAKLGREEEAIELFFRMRSEGIVPNEHS----FVAIL 106 (812)
Q Consensus 36 ~~~li~~~~~~g~~~~A~~~f~~~~~----~~~~~~-~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~----~~~ll 106 (812)
...|..-|.......+|+..++-+.. ||.-.. -.+-..+.+.+.+.+|+++|+..+..-...+..+ .+.+-
T Consensus 204 l~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nig 283 (840)
T KOG2003|consen 204 LFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIG 283 (840)
T ss_pred HHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcC
Confidence 33445556666667777777765442 332211 1233456677777888887776554322222233 23333
Q ss_pred HHHHhcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHhhhcCCCHHHHHHHHhcCCC----------------CCcchHH
Q 040319 107 TACIRLLELELGFQIHALIVKMGCVDSVFVTNALMGLYGKFSFCLDYLLKLFDELPH----------------KDTVSWN 170 (812)
Q Consensus 107 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~~a~~~f~~~~~----------------~~~~~~~ 170 (812)
-.+.+.|.++.|...+++..+. .|+..+.-.|+-.+.-.| +.+..++.|..|.. |+....|
T Consensus 284 vtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~-d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~ 360 (840)
T KOG2003|consen 284 VTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIG-DAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLN 360 (840)
T ss_pred eeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecC-cHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHH
Confidence 3456778888888888877765 466665555555555567 77888888876641 3333333
Q ss_pred HHH-----HHHHcCC--ChhHHHHHHHHhHhcCCCCCCcchHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHH
Q 040319 171 TVI-----SSVVNEF--EYEKAFELFRDMKRDNGFTVDYFTISTLLTACTGCFVLMEGRAVHAHAIRIGLGANLSVNNAL 243 (812)
Q Consensus 171 ~li-----~~~~~~g--~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 243 (812)
.-| +-.-+.+ +.++++-.-..+ ...-+.||-.. = .+.+.+.+..-.-..+..+... .-
T Consensus 361 eai~nd~lk~~ek~~ka~aek~i~ta~ki-iapvi~~~fa~---g---------~dwcle~lk~s~~~~la~dlei--~k 425 (840)
T KOG2003|consen 361 EAIKNDHLKNMEKENKADAEKAIITAAKI-IAPVIAPDFAA---G---------CDWCLESLKASQHAELAIDLEI--NK 425 (840)
T ss_pred HHHhhHHHHHHHHhhhhhHHHHHHHHHHH-hccccccchhc---c---------cHHHHHHHHHhhhhhhhhhhhh--hH
Confidence 332 2222222 122222222222 22223333211 0 0111121111111111111111 11
Q ss_pred HHHHHhcCChHHHHHHHhcCCCCcchhHHHHHH-----HHHh-hCChhHHHHHhccCCCCCcccHHHH---HHHHHhCCC
Q 040319 244 IGFYTKCGRVKDVVALLERMPVMDIITLTEIII-----AYME-FGYVDLAVEIFDKMPEKNSVSYNAL---LAGYCKNGK 314 (812)
Q Consensus 244 i~~~~~~g~~~~A~~l~~~~~~~~~~~~~~li~-----~~~~-~g~~~~A~~~f~~m~~~d~~~~~~l---i~~~~~~g~ 314 (812)
..-|.+.|+++.|.+++.-....|..+-+.-.. -|.+ -.++.+|...-+.....|...-.++ ...-..+|+
T Consensus 426 a~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd 505 (840)
T KOG2003|consen 426 AGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGD 505 (840)
T ss_pred HHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCc
Confidence 235788999999999888776665544333222 1222 2345555555444432222111111 122345678
Q ss_pred hHHHHHHHHHHHHcCCCCCHhHHHHHHHHhccchhhhhHHHHHhhHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhc
Q 040319 315 AMEALGLFVKLLEEGLVLTEFTLTSVVNACGLIMEAKLSEQIHGFVMKFGLGSNDCIEAALLDMLTRCGRMADAEKMFYR 394 (812)
Q Consensus 315 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~ 394 (812)
+++|.+.|++.+.....-....|++-+ .|-+.|++++|+..|-.
T Consensus 506 ~dka~~~ykeal~ndasc~ealfnigl------------------------------------t~e~~~~ldeald~f~k 549 (840)
T KOG2003|consen 506 LDKAAEFYKEALNNDASCTEALFNIGL------------------------------------TAEALGNLDEALDCFLK 549 (840)
T ss_pred HHHHHHHHHHHHcCchHHHHHHHHhcc------------------------------------cHHHhcCHHHHHHHHHH
Confidence 888888888877654333333333222 25677888888888876
Q ss_pred CCC-CCCceeeeHHHHHHHHHcCChhhHHHHHHHhcccCCCCC-ChhhHHHHHHHhcCccchHHHHHHHHHHHHhCCCCc
Q 040319 395 WPT-DRDDSIIWTSMICGYARSGKPEHAILLFHQSQSEATVVP-DEIALTSVLGVCGTLGFHEMGKQIHSYALKTGFSSD 472 (812)
Q Consensus 395 ~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p-~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~ 472 (812)
+.. -.+++.....+...|-...++.+|++++.+... +.| |...++-+...|-+.|+-..|.+.|-.--+ -++.+
T Consensus 550 lh~il~nn~evl~qianiye~led~aqaie~~~q~~s---lip~dp~ilskl~dlydqegdksqafq~~ydsyr-yfp~n 625 (840)
T KOG2003|consen 550 LHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANS---LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR-YFPCN 625 (840)
T ss_pred HHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc---cCCCCHHHHHHHHHHhhcccchhhhhhhhhhccc-ccCcc
Confidence 541 134455666677788888889999999877664 444 444556666777777777777766644433 24567
Q ss_pred hhHHHHHHHHhhhcCCHHHHHHHHccC--CCCChhHHHHHHHHH-HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHh
Q 040319 473 LGVANSMVSMYFKCCNMSNAIKAFNKM--PSHDIVSWNGLIAGH-LLHRQGDEALAVWSSMEKASIKPDAITFVLIISAY 549 (812)
Q Consensus 473 ~~~~~~Li~~y~k~g~~~~A~~~f~~~--~~~~~~~~~~li~~~-~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~ 549 (812)
..+...|...|....-+++|..+|++. .+|+.+-|..||..| .+.|++.+|+++|++..+. +.-|......|+.-|
T Consensus 626 ie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~ 704 (840)
T KOG2003|consen 626 IETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIA 704 (840)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHh
Confidence 777777777777777777777777754 357777777777554 4567777777777777662 444445556666666
Q ss_pred cC
Q 040319 550 RY 551 (812)
Q Consensus 550 ~~ 551 (812)
..
T Consensus 705 ~d 706 (840)
T KOG2003|consen 705 GD 706 (840)
T ss_pred cc
Confidence 65
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.7e-11 Score=128.84 Aligned_cols=161 Identities=17% Similarity=0.170 Sum_probs=125.2
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCCcchH
Q 040319 502 HDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKP-DAITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHY 580 (812)
Q Consensus 502 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y 580 (812)
-.+.+|-++...|..+++.+.|++.|++.++ +.| ...+|+.+..-+.. ...+|.|...|+.... .++.||
T Consensus 419 ~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~--~ee~d~a~~~fr~Al~-----~~~rhY 489 (638)
T KOG1126|consen 419 NSPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIA--TEEFDKAMKSFRKALG-----VDPRHY 489 (638)
T ss_pred CCcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhh--hHHHHhHHHHHHhhhc-----CCchhh
Confidence 4567888888888888888888888888888 777 44777766665655 7778888888876654 677777
Q ss_pred HHH---HHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhh
Q 040319 581 ASL---VSVLGYWGFLEEAEETINNMP-FQP-KVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSS 655 (812)
Q Consensus 581 ~~l---i~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~ 655 (812)
+++ .-.|.+.++++.|+-.|++.. +.| +.++...+...+...|..++|...+++++-++|.|+-.-+..+.++..
T Consensus 490 nAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~ 569 (638)
T KOG1126|consen 490 NAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFS 569 (638)
T ss_pred HHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHh
Confidence 765 456788888888888888855 677 455555555667778888888888888888888888888888888888
Q ss_pred CCCcchHHHHHHHHHh
Q 040319 656 SGRWHNSELVREDMRE 671 (812)
Q Consensus 656 ~g~~~~a~~~~~~m~~ 671 (812)
.|++++|...++++++
T Consensus 570 ~~~~~eal~~LEeLk~ 585 (638)
T KOG1126|consen 570 LGRYVEALQELEELKE 585 (638)
T ss_pred hcchHHHHHHHHHHHH
Confidence 8888888888888865
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.39 E-value=5.3e-10 Score=112.92 Aligned_cols=211 Identities=15% Similarity=0.147 Sum_probs=165.4
Q ss_pred ccchHHHHHHHHHHHHhCCCCchhHHHHHHHHhhhcCCHHHHHHHHccCCC---CChhHHHHHHHHHHhcCChHHHHHHH
Q 040319 451 LGFHEMGKQIHSYALKTGFSSDLGVANSMVSMYFKCCNMSNAIKAFNKMPS---HDIVSWNGLIAGHLLHRQGDEALAVW 527 (812)
Q Consensus 451 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~ 527 (812)
.|+.-.+.+-++.+++....+ ...|--+..+|....+.++-.+.|++..+ .|..+|..-...+.-.+++++|..=|
T Consensus 339 ~g~~~~a~~d~~~~I~l~~~~-~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF 417 (606)
T KOG0547|consen 339 KGDSLGAQEDFDAAIKLDPAF-NSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADF 417 (606)
T ss_pred cCCchhhhhhHHHHHhcCccc-chHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHH
Confidence 356666666677776644332 22255566778888888888888887664 45566666666667778999999999
Q ss_pred HHHHHCCCCCCH-HHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCCcchHHHHHHHHhhcCChHHHHHHHHhC-CC
Q 040319 528 SSMEKASIKPDA-ITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLEEAEETINNM-PF 605 (812)
Q Consensus 528 ~~m~~~g~~pd~-~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m-~~ 605 (812)
++.++ +.|+. ..|.-+--+..+ .+.++++...|+..+++ ++.-++.|+-....|...+++++|.+.++.. .+
T Consensus 418 ~Kai~--L~pe~~~~~iQl~~a~Yr--~~k~~~~m~~Fee~kkk--FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L 491 (606)
T KOG0547|consen 418 QKAIS--LDPENAYAYIQLCCALYR--QHKIAESMKTFEEAKKK--FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL 491 (606)
T ss_pred HHHhh--cChhhhHHHHHHHHHHHH--HHHHHHHHHHHHHHHHh--CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh
Confidence 99998 88876 566666666666 88999999999999874 4445899999999999999999999999874 35
Q ss_pred CCC---------HHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCCcchHHHHHHHH
Q 040319 606 QPK---------VSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWHNSELVREDM 669 (812)
Q Consensus 606 ~p~---------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 669 (812)
+|+ +.+-.+++-.- -.+++..|+..++++++++|....+|..|+.+-...|+.++|+++|++-
T Consensus 492 E~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEks 563 (606)
T KOG0547|consen 492 EPREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKS 563 (606)
T ss_pred ccccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 554 34444444443 3499999999999999999999999999999999999999999999875
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.8e-08 Score=101.58 Aligned_cols=479 Identities=11% Similarity=0.055 Sum_probs=295.7
Q ss_pred CHHHHHHHHhcCC---CCCcchHHHHHHHHHcCCChhHHHHHHHHhHhcCCCCCCcc-hHHHHHHHHhcCCChHHHHHHH
Q 040319 150 CLDYLLKLFDELP---HKDTVSWNTVISSVVNEFEYEKAFELFRDMKRDNGFTVDYF-TISTLLTACTGCFVLMEGRAVH 225 (812)
Q Consensus 150 ~~~~a~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~-t~~~ll~~~~~~~~~~~a~~~~ 225 (812)
++..|+.+|++.. .++...|--.+..=.++.....|..+++.. .. +-|-.. .|---+-.=-..|++..|+++|
T Consensus 88 e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRA-vt--~lPRVdqlWyKY~ymEE~LgNi~gaRqif 164 (677)
T KOG1915|consen 88 EIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRA-VT--ILPRVDQLWYKYIYMEEMLGNIAGARQIF 164 (677)
T ss_pred HHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHH-HH--hcchHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 5666777776554 356666666666666666677777776655 21 112111 1111111222345555555555
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCcchhHHHHHHHHHhhCChhHHHHHhccCCCCCcccHHHH
Q 040319 226 AHAIRIGLGANLSVNNALIGFYTKCGRVKDVVALLERMPVMDIITLTEIIIAYMEFGYVDLAVEIFDKMPEKNSVSYNAL 305 (812)
Q Consensus 226 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~d~~~~~~l 305 (812)
..-.. ..|+...|++.|++=.+-..++.|..++++.. +..|++.+|---
T Consensus 165 erW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV-----------------------------~~HP~v~~wiky 213 (677)
T KOG1915|consen 165 ERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFV-----------------------------LVHPKVSNWIKY 213 (677)
T ss_pred HHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHh-----------------------------eecccHHHHHHH
Confidence 55543 35555555555555555555555555554431 123455555444
Q ss_pred HHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHh----ccchhhhhHHHHHhhHHHhcCCC-chhHHHHHHHHHH
Q 040319 306 LAGYCKNGKAMEALGLFVKLLEEGLVLTEFTLTSVVNAC----GLIMEAKLSEQIHGFVMKFGLGS-NDCIEAALLDMLT 380 (812)
Q Consensus 306 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~----~~~~~~~~a~~i~~~~~~~g~~~-~~~~~~~Li~~y~ 380 (812)
..-=-++|+...|..+|....+. --|..--..++.++ ......+.+.-++..++..-... ....|..+...--
T Consensus 214 arFE~k~g~~~~aR~VyerAie~--~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEK 291 (677)
T KOG1915|consen 214 ARFEEKHGNVALARSVYERAIEF--LGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEK 291 (677)
T ss_pred HHHHHhcCcHHHHHHHHHHHHHH--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH
Confidence 44444555555555555554432 11122222222333 23455666777777776653322 2445555555555
Q ss_pred hcCCHHHHHHHH--------hcC-CCCCCceeeeHHHHHHHHHcCChhhHHHHHHHhcccCCCCCChh-------hHHHH
Q 040319 381 RCGRMADAEKMF--------YRW-PTDRDDSIIWTSMICGYARSGKPEHAILLFHQSQSEATVVPDEI-------ALTSV 444 (812)
Q Consensus 381 ~~g~~~~A~~~f--------~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~-------t~~~l 444 (812)
+-|+...-.... +.+ ..++-|-.+|--.+..-...|+.+...++|++... +++|-.. .|.-+
T Consensus 292 qfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIa--nvpp~~ekr~W~RYIYLWi 369 (677)
T KOG1915|consen 292 QFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIA--NVPPASEKRYWRRYIYLWI 369 (677)
T ss_pred HhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHc--cCCchhHHHHHHHHHHHHH
Confidence 556543333221 222 21233456777777777778999999999999884 5666331 11111
Q ss_pred HHHh---cCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHhh----hcCCHHHHHHHHccCCC--CChhHHHHHHHHHH
Q 040319 445 LGVC---GTLGFHEMGKQIHSYALKTGFSSDLGVANSMVSMYF----KCCNMSNAIKAFNKMPS--HDIVSWNGLIAGHL 515 (812)
Q Consensus 445 l~a~---~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~----k~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~ 515 (812)
=-+| ....+.+.+++++...++ -++....++.-+--+|+ ++.++..|.+++..... |-...+..-|..-.
T Consensus 370 nYalyeEle~ed~ertr~vyq~~l~-lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelEl 448 (677)
T KOG1915|consen 370 NYALYEELEAEDVERTRQVYQACLD-LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELEL 448 (677)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHh-hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHH
Confidence 1122 345688889999998888 34555666666655555 67899999999987654 77788888888888
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCCcchHHHHHHHHhhcCChH
Q 040319 516 LHRQGDEALAVWSSMEKASIKPDA-ITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLE 594 (812)
Q Consensus 516 ~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~ 594 (812)
+.+.++....++++.++ ..|.. .++......=.. .|+.+.|..+|+-......+......|-+.||.=...|.++
T Consensus 449 qL~efDRcRkLYEkfle--~~Pe~c~~W~kyaElE~~--LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~e 524 (677)
T KOG1915|consen 449 QLREFDRCRKLYEKFLE--FSPENCYAWSKYAELETS--LGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFE 524 (677)
T ss_pred HHhhHHHHHHHHHHHHh--cChHhhHHHHHHHHHHHH--hhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHH
Confidence 99999999999999999 67765 666555544445 89999999999988875444445678899999999999999
Q ss_pred HHHHHHHhCC-CCCCHHHHHHHHHHHH-----hcC-----------CHHHHHHHHHHHHcc----CCCCC--chHHHHHh
Q 040319 595 EAEETINNMP-FQPKVSVWRALLDSCR-----IRL-----------NTTIGKRVAKHILAM----EPQDP--ATYILVSN 651 (812)
Q Consensus 595 ~A~~~~~~m~-~~p~~~~~~~ll~~~~-----~~~-----------~~~~a~~~~~~~~~~----~p~~~--~~~~~l~~ 651 (812)
.|..+++++. -.+...+|-++..--. ..+ ++..|..+++++... +|... ......-+
T Consensus 525 kaR~LYerlL~rt~h~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~~~KeeR~~LLEaw~~ 604 (677)
T KOG1915|consen 525 KARALYERLLDRTQHVKVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANTYLKESTPKEERLMLLEAWKN 604 (677)
T ss_pred HHHHHHHHHHHhcccchHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 9999999976 4566668888876433 334 677888888888653 34321 22334455
Q ss_pred hhhhCCCcchHHHHHHHHHh
Q 040319 652 LYSSSGRWHNSELVREDMRE 671 (812)
Q Consensus 652 ~y~~~g~~~~a~~~~~~m~~ 671 (812)
+-...|.-.+...|-++|++
T Consensus 605 ~E~~~G~~~d~~~V~s~mPk 624 (677)
T KOG1915|consen 605 MEETFGTEGDVERVQSKMPK 624 (677)
T ss_pred HHHhcCchhhHHHHHHhccH
Confidence 66677888888888888864
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.36 E-value=3e-11 Score=126.88 Aligned_cols=277 Identities=11% Similarity=0.049 Sum_probs=213.7
Q ss_pred CHHHHHHHHhcCCCCCCceeeeH--HHHHHHHHcCChhhHHHHHHHhcccCCCCC-ChhhHHHHHHHhcCccchHHHHHH
Q 040319 384 RMADAEKMFYRWPTDRDDSIIWT--SMICGYARSGKPEHAILLFHQSQSEATVVP-DEIALTSVLGVCGTLGFHEMGKQI 460 (812)
Q Consensus 384 ~~~~A~~~f~~~~~~~~~~~~~~--~li~~~~~~g~~~~A~~~~~~m~~~~g~~p-~~~t~~~ll~a~~~~~~~~~a~~~ 460 (812)
+..+|...|..++....|.. |. .+..+|...+++++|..+|+..++...... +..+|.++|--..+ +.+...
T Consensus 334 ~~~~A~~~~~klp~h~~nt~-wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTG-WVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHhcCCch-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHH
Confidence 46788888888763333233 43 455688889999999999999887222222 23356666533221 111122
Q ss_pred HHHHHHhCCCCchhHHHHHHHHhhhcCCHHHHHHHHccCCC--C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 040319 461 HSYALKTGFSSDLGVANSMVSMYFKCCNMSNAIKAFNKMPS--H-DIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKP 537 (812)
Q Consensus 461 ~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 537 (812)
+..-.-.--+..+.+|.++.++|.-+++.+.|.+.|++..+ | ...+|+-+..-+.....++.|+..|+..+. +.|
T Consensus 409 Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~~ 486 (638)
T KOG1126|consen 409 LAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--VDP 486 (638)
T ss_pred HHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--CCc
Confidence 22211112345788999999999999999999999999877 3 567888888888899999999999999987 777
Q ss_pred CH-HHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCC-cchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHH
Q 040319 538 DA-ITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPT-SEHYASLVSVLGYWGFLEEAEETINNMP-FQP-KVSVWR 613 (812)
Q Consensus 538 d~-~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~ 613 (812)
.. ..|..+...|.+ .++++.|.-.|+...+ +.|. .....++...+-+.|+.|+|++++++.- ++| |+..--
T Consensus 487 rhYnAwYGlG~vy~K--qek~e~Ae~~fqkA~~---INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~ 561 (638)
T KOG1126|consen 487 RHYNAWYGLGTVYLK--QEKLEFAEFHFQKAVE---INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKY 561 (638)
T ss_pred hhhHHHHhhhhheec--cchhhHHHHHHHhhhc---CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHH
Confidence 76 677788888888 9999999999999876 6775 6677888889999999999999999965 555 555555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCCcchHHHHHHHHHhC
Q 040319 614 ALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWHNSELVREDMREK 672 (812)
Q Consensus 614 ~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 672 (812)
--...+...++.++|.+.+|++.++-|++...+..++.+|-+.|+.+.|..-+.-|.+.
T Consensus 562 ~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 562 HRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDL 620 (638)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence 55566677899999999999999999999999999999999999999999888777553
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.5e-09 Score=109.08 Aligned_cols=354 Identities=13% Similarity=0.069 Sum_probs=201.7
Q ss_pred cchhHHHHHHHHHhhCChhHHHHHhccCCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHH--HHHHHHh
Q 040319 267 DIITLTEIIIAYMEFGYVDLAVEIFDKMPEKNSVSYNALLAGYCKNGKAMEALGLFVKLLEEGLVLTEFTL--TSVVNAC 344 (812)
Q Consensus 267 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~--~~ll~a~ 344 (812)
|...+......+-+.|..+.|++.|......-+..|.+-+....-..+.+.+.. .. .|...|...+ -.+..++
T Consensus 163 D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~----l~-~~l~~~~h~M~~~F~~~a~ 237 (559)
T KOG1155|consen 163 DEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSI----LV-VGLPSDMHWMKKFFLKKAY 237 (559)
T ss_pred hhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHH----HH-hcCcccchHHHHHHHHHHH
Confidence 333334444455566777777777776655445555544332222222221111 11 1111111111 1223334
Q ss_pred ccchhhhhHHHHHhhHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCCceeeeHHHHHHHHHcCChhhHHHH
Q 040319 345 GLIMEAKLSEQIHGFVMKFGLGSNDCIEAALLDMLTRCGRMADAEKMFYRWPTDRDDSIIWTSMICGYARSGKPEHAILL 424 (812)
Q Consensus 345 ~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 424 (812)
-.....+.+.+-.......|++.+...-+-...++-...+++.|+.+|+++..+.|
T Consensus 238 ~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDP------------------------ 293 (559)
T KOG1155|consen 238 QELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDP------------------------ 293 (559)
T ss_pred HHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCC------------------------
Confidence 44445555555555555566655555555555555555566666666665542221
Q ss_pred HHHhcccCCCCC-ChhhHHHHHHHhcCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHhhhcCCHHHHHHHHccCCC--
Q 040319 425 FHQSQSEATVVP-DEIALTSVLGVCGTLGFHEMGKQIHSYALKTGFSSDLGVANSMVSMYFKCCNMSNAIKAFNKMPS-- 501 (812)
Q Consensus 425 ~~~m~~~~g~~p-~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~-- 501 (812)
.+. |.-||+.+|-.-.....+.---+....+ ..+. +.+...+.+.|+-.++.++|...|+...+
T Consensus 294 ---------YRl~dmdlySN~LYv~~~~skLs~LA~~v~~i--dKyR--~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN 360 (559)
T KOG1155|consen 294 ---------YRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNI--DKYR--PETCCIIANYYSLRSEHEKAVMYFKRALKLN 360 (559)
T ss_pred ---------CcchhHHHHhHHHHHHhhhHHHHHHHHHHHHh--ccCC--ccceeeehhHHHHHHhHHHHHHHHHHHHhcC
Confidence 111 1123333332211111110000000011 1122 23444566667777777777777776655
Q ss_pred -CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccC-Ccc
Q 040319 502 -HDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKP-DAITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEP-TSE 578 (812)
Q Consensus 502 -~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~ 578 (812)
.-...|+-|..-|....+...|++-++..++ +.| |...|..|..+|.- .+...-|+-+|++..+ ++| |..
T Consensus 361 p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd--i~p~DyRAWYGLGQaYei--m~Mh~YaLyYfqkA~~---~kPnDsR 433 (559)
T KOG1155|consen 361 PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVD--INPRDYRAWYGLGQAYEI--MKMHFYALYYFQKALE---LKPNDSR 433 (559)
T ss_pred cchhHHHHHhhHHHHHhcccHHHHHHHHHHHh--cCchhHHHHhhhhHHHHH--hcchHHHHHHHHHHHh---cCCCchH
Confidence 3346677777778888888888888888777 555 44777777778777 7777778888877765 455 467
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHc-------cCCCCCchHHHH
Q 040319 579 HYASLVSVLGYWGFLEEAEETINNMP--FQPKVSVWRALLDSCRIRLNTTIGKRVAKHILA-------MEPQDPATYILV 649 (812)
Q Consensus 579 ~y~~li~~l~~~g~~~~A~~~~~~m~--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-------~~p~~~~~~~~l 649 (812)
.|.+|.++|.+.++.+||+.-|+... ...+...+..|...+...++.++|.+.+++-++ .+|....+..-|
T Consensus 434 lw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fL 513 (559)
T KOG1155|consen 434 LWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFL 513 (559)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHH
Confidence 78888888888888888888877754 233456777788888888888888888888776 344444555667
Q ss_pred HhhhhhCCCcchHHHHHHHH
Q 040319 650 SNLYSSSGRWHNSELVREDM 669 (812)
Q Consensus 650 ~~~y~~~g~~~~a~~~~~~m 669 (812)
++-+.+.++|++|...-...
T Consensus 514 A~~f~k~~~~~~As~Ya~~~ 533 (559)
T KOG1155|consen 514 AEYFKKMKDFDEASYYATLV 533 (559)
T ss_pred HHHHHhhcchHHHHHHHHHH
Confidence 88888888888888765543
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.2e-08 Score=102.78 Aligned_cols=373 Identities=13% Similarity=0.082 Sum_probs=230.4
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCcchhHHHHHHHHHhhCChhHHHHHhccCCCCCcccHH-HHHHHHHhC
Q 040319 234 GANLSVNNALIGFYTKCGRVKDVVALLERMPVMDIITLTEIIIAYMEFGYVDLAVEIFDKMPEKNSVSYN-ALLAGYCKN 312 (812)
Q Consensus 234 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~d~~~~~-~li~~~~~~ 312 (812)
..|...+-..-..+-+.|....|+..|......-+..|.+-+....-..+.+.+..+....+..+...-. -+..++...
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~el 240 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQEL 240 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHHHH
Confidence 4444444334445556677777777666654433333333332222223333333343333332222111 233566666
Q ss_pred CChHHHHHHHHHHHHcCCCCCHhHHHHHHHHhccchhhhhHHHHHhhHHHhcCC--CchhHHHHHHHHHHhcCC--H-HH
Q 040319 313 GKAMEALGLFVKLLEEGLVLTEFTLTSVVNACGLIMEAKLSEQIHGFVMKFGLG--SNDCIEAALLDMLTRCGR--M-AD 387 (812)
Q Consensus 313 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~--~~~~~~~~Li~~y~~~g~--~-~~ 387 (812)
.+.++++.=.......|+.-+...-+....+.-...++++|..+|+.+.+...- .|..+|+.++ |.+..+ + --
T Consensus 241 ~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~L--Yv~~~~skLs~L 318 (559)
T KOG1155|consen 241 HQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVL--YVKNDKSKLSYL 318 (559)
T ss_pred HHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHH--HHHhhhHHHHHH
Confidence 788888888888888887666665555555667778999999999999987431 2455555544 333222 1 12
Q ss_pred HHHHHhcCCCCCCceeeeHHHHHHHHHcCChhhHHHHHHHhcccCCCCCChhhHHHHHHHhcCccchHHHHHHHHHHHHh
Q 040319 388 AEKMFYRWPTDRDDSIIWTSMICGYARSGKPEHAILLFHQSQSEATVVPDEIALTSVLGVCGTLGFHEMGKQIHSYALKT 467 (812)
Q Consensus 388 A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~ 467 (812)
|..+++-=. -+ +.|...+.+-|.-.++.+.|+..|++..+ +.|.
T Consensus 319 A~~v~~idK-yR--~ETCCiIaNYYSlr~eHEKAv~YFkRALk---LNp~------------------------------ 362 (559)
T KOG1155|consen 319 AQNVSNIDK-YR--PETCCIIANYYSLRSEHEKAVMYFKRALK---LNPK------------------------------ 362 (559)
T ss_pred HHHHHHhcc-CC--ccceeeehhHHHHHHhHHHHHHHHHHHHh---cCcc------------------------------
Confidence 333332111 12 34555555556666666666666666655 3332
Q ss_pred CCCCchhHHHHHHHHhhhcCCHHHHHHHHccCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHH
Q 040319 468 GFSSDLGVANSMVSMYFKCCNMSNAIKAFNKMPS---HDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDA-ITFV 543 (812)
Q Consensus 468 g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~ 543 (812)
....|+.+.+-|....+...|.+-++...+ .|-..|..|..+|...+.+.-|+-.|++..+ .+|+. ..+.
T Consensus 363 ----~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~--~kPnDsRlw~ 436 (559)
T KOG1155|consen 363 ----YLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALE--LKPNDSRLWV 436 (559)
T ss_pred ----hhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHh--cCCCchHHHH
Confidence 344566677777777777788777776554 6778888888888888888888888888888 77765 6777
Q ss_pred HHHHHhcCCCCchHHHHHHHHHHhhhhcCccCCcchHHHHHHHHhhcCChHHHHHHHHhCC--------CCCCHHHHHH-
Q 040319 544 LIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLEEAEETINNMP--------FQPKVSVWRA- 614 (812)
Q Consensus 544 ~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~--------~~p~~~~~~~- 614 (812)
+|..+|.+ .++.++|++.|..... .| ..+...|..+.+++-+-++.++|-..+++-. ..|...--..
T Consensus 437 aLG~CY~k--l~~~~eAiKCykrai~-~~-dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~f 512 (559)
T KOG1155|consen 437 ALGECYEK--LNRLEEAIKCYKRAIL-LG-DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLF 512 (559)
T ss_pred HHHHHHHH--hccHHHHHHHHHHHHh-cc-ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHH
Confidence 78888888 8888888888887765 11 2245778888888888888888888776532 2332222222
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCCcchHHHHHHHHHh
Q 040319 615 LLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWHNSELVREDMRE 671 (812)
Q Consensus 615 ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 671 (812)
|..-+.+.++.++|...+.+.+.-+| ..+||..++++++.
T Consensus 513 LA~~f~k~~~~~~As~Ya~~~~~~~~-----------------e~eeak~LlReir~ 552 (559)
T KOG1155|consen 513 LAEYFKKMKDFDEASYYATLVLKGET-----------------ECEEAKALLREIRK 552 (559)
T ss_pred HHHHHHhhcchHHHHHHHHHHhcCCc-----------------hHHHHHHHHHHHHH
Confidence 33446678899988877766665543 34677777766654
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.1e-08 Score=102.17 Aligned_cols=271 Identities=14% Similarity=0.105 Sum_probs=190.3
Q ss_pred HHHhcCCHHHHHHHHhcCCCCCCcee---eeHHH-HHHHHHcC-ChhhHHHHHHHhcccCCCCCChhhHHHHHHHhcCcc
Q 040319 378 MLTRCGRMADAEKMFYRWPTDRDDSI---IWTSM-ICGYARSG-KPEHAILLFHQSQSEATVVPDEIALTSVLGVCGTLG 452 (812)
Q Consensus 378 ~y~~~g~~~~A~~~f~~~~~~~~~~~---~~~~l-i~~~~~~g-~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~a~~~~~ 452 (812)
-|.+.|+++.|.++++-.. .+++-+ .-|.| .--|.+.| ++..|.+.-+....-... +......--...-..|
T Consensus 428 ~~lk~~d~~~aieilkv~~-~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dry--n~~a~~nkgn~~f~ng 504 (840)
T KOG2003|consen 428 ELLKNGDIEGAIEILKVFE-KKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRY--NAAALTNKGNIAFANG 504 (840)
T ss_pred HHHhccCHHHHHHHHHHHH-hccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccccc--CHHHhhcCCceeeecC
Confidence 4678889888888777665 433111 12222 22233333 455666655544331111 1111111111223457
Q ss_pred chHHHHHHHHHHHHhCCCCchhHHHHHHHHhhhcCCHHHHHHHHccCCC---CChhHHHHHHHHHHhcCChHHHHHHHHH
Q 040319 453 FHEMGKQIHSYALKTGFSSDLGVANSMVSMYFKCCNMSNAIKAFNKMPS---HDIVSWNGLIAGHLLHRQGDEALAVWSS 529 (812)
Q Consensus 453 ~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~ 529 (812)
+++.|...+...+...-.-....|| +.-.+-+.|++++|+..|-++.. .++.....+.+.|-...+...|++++-+
T Consensus 505 d~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q 583 (840)
T KOG2003|consen 505 DLDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQ 583 (840)
T ss_pred cHHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHH
Confidence 8888988888887644322222332 23356788999999999976643 6777778888999999999999999988
Q ss_pred HHHCCCCCCH-HHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCCcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC
Q 040319 530 MEKASIKPDA-ITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLEEAEETINNMP-FQP 607 (812)
Q Consensus 530 m~~~g~~pd~-~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p 607 (812)
... +-|+. ....-|...|-+ .|+-.+|.+++-.--+ -++-++++..-|..-|....-+++|+..|++.. +.|
T Consensus 584 ~~s--lip~dp~ilskl~dlydq--egdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp 657 (840)
T KOG2003|consen 584 ANS--LIPNDPAILSKLADLYDQ--EGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQP 657 (840)
T ss_pred hcc--cCCCCHHHHHHHHHHhhc--ccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCc
Confidence 776 66765 556667778888 8999999887654322 134468888888888888889999999999965 899
Q ss_pred CHHHHHHHHHHHH-hcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCC
Q 040319 608 KVSVWRALLDSCR-IRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGR 658 (812)
Q Consensus 608 ~~~~~~~ll~~~~-~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~ 658 (812)
+..-|..++..|. +.||+.+|...++..-..-|+|......|..+....|.
T Consensus 658 ~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 658 NQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred cHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 9999999998865 57999999999999999999999999999999888885
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=7e-10 Score=119.19 Aligned_cols=227 Identities=11% Similarity=-0.002 Sum_probs=154.3
Q ss_pred HHHHHhcCCHHHHHHHHhcCCCC-CCceeeeHHHHHHHHHcCChhhHHHHHHHhcccCCCCCChhhHHHHHHHhcCccch
Q 040319 376 LDMLTRCGRMADAEKMFYRWPTD-RDDSIIWTSMICGYARSGKPEHAILLFHQSQSEATVVPDEIALTSVLGVCGTLGFH 454 (812)
Q Consensus 376 i~~y~~~g~~~~A~~~f~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~a~~~~~~~ 454 (812)
...+...|+.+.|...++++... +.+......+...|.+.|++++|++++..+.+ .+..++. ....+-
T Consensus 160 a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k-~~~~~~~-~~~~l~--------- 228 (398)
T PRK10747 160 VRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAK-AHVGDEE-HRAMLE--------- 228 (398)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-cCCCCHH-HHHHHH---------
Confidence 45667778888888877776533 33455666777788888888888888888776 3322211 111000
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHhhhcCCHHHHHHHHccCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 040319 455 EMGKQIHSYALKTGFSSDLGVANSMVSMYFKCCNMSNAIKAFNKMPS---HDIVSWNGLIAGHLLHRQGDEALAVWSSME 531 (812)
Q Consensus 455 ~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 531 (812)
...+..++....+..+.+...++++.++. .++.....+..++...|+.++|.+++++..
T Consensus 229 ------------------~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l 290 (398)
T PRK10747 229 ------------------QQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGL 290 (398)
T ss_pred ------------------HHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 01122223333333455566666666654 466777888888888999999999998888
Q ss_pred HCCCCCCHHHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCCcchHHHHHHHHhhcCChHHHHHHHHhCC-CCCCHH
Q 040319 532 KASIKPDAITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLEEAEETINNMP-FQPKVS 610 (812)
Q Consensus 532 ~~g~~pd~~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p~~~ 610 (812)
+ ..||.... ++.+... .++.+++.+..+...+.+ +-+...+.++..++.+.|++++|.+.|++.. ..|+..
T Consensus 291 ~--~~~~~~l~--~l~~~l~--~~~~~~al~~~e~~lk~~--P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~ 362 (398)
T PRK10747 291 K--RQYDERLV--LLIPRLK--TNNPEQLEKVLRQQIKQH--GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAY 362 (398)
T ss_pred h--cCCCHHHH--HHHhhcc--CCChHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHH
Confidence 7 45554211 2222233 688888888888887632 2335678888899999999999999998865 778888
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHccC
Q 040319 611 VWRALLDSCRIRLNTTIGKRVAKHILAME 639 (812)
Q Consensus 611 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 639 (812)
.+..|...+...|+.++|...+++.+.+.
T Consensus 363 ~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 363 DYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 88888888999999999999999988764
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=8.7e-10 Score=118.44 Aligned_cols=275 Identities=10% Similarity=0.089 Sum_probs=200.2
Q ss_pred cCCHHHHHHHHhcCCCCCCc-eeeeHHHHHHHHHcCChhhHHHHHHHhcccCCCCCChhhHH--HHHHHhcCccchHHHH
Q 040319 382 CGRMADAEKMFYRWPTDRDD-SIIWTSMICGYARSGKPEHAILLFHQSQSEATVVPDEIALT--SVLGVCGTLGFHEMGK 458 (812)
Q Consensus 382 ~g~~~~A~~~f~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~--~ll~a~~~~~~~~~a~ 458 (812)
.|+++.|++.+...+...++ ...|-.......+.|+++.|.+.|.++.+ ..|+..... .....+...|+++.|.
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~---~~~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAE---LADNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCcchHHHHHHHHHHHHHCCCHHHHH
Confidence 58888888888776522221 22232223344788999999999998876 566654333 2245667788999999
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHhhhcCCHHHHHHHHccCCCCCh-----------hHHHHHHHHHHhcCChHHHHHHH
Q 040319 459 QIHSYALKTGFSSDLGVANSMVSMYFKCCNMSNAIKAFNKMPSHDI-----------VSWNGLIAGHLLHRQGDEALAVW 527 (812)
Q Consensus 459 ~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~-----------~~~~~li~~~~~~g~~~~A~~l~ 527 (812)
..++.+.+.. +.++.+...+...|.+.|++++|..++..+.+... ..|..++.......+.+...+++
T Consensus 174 ~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w 252 (398)
T PRK10747 174 HGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWW 252 (398)
T ss_pred HHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 9998888765 44678888999999999999999999888775211 13344444444455566677777
Q ss_pred HHHHHCCCCCCHHHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCCcchHHHHHHHHhhcCChHHHHHHHHhCC-CC
Q 040319 528 SSMEKASIKPDAITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLEEAEETINNMP-FQ 606 (812)
Q Consensus 528 ~~m~~~g~~pd~~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~ 606 (812)
+++-+. .+.+......+..++.. .|+.++|.+.++...+ ..|+.... ++......|+.+++++.+++.. ..
T Consensus 253 ~~lp~~-~~~~~~~~~~~A~~l~~--~g~~~~A~~~L~~~l~---~~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~ 324 (398)
T PRK10747 253 KNQSRK-TRHQVALQVAMAEHLIE--CDDHDTAQQIILDGLK---RQYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQH 324 (398)
T ss_pred HhCCHH-HhCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHh---cCCCHHHH--HHHhhccCCChHHHHHHHHHHHhhC
Confidence 776442 33355667777778888 9999999999988875 24444222 2233335599999999998865 55
Q ss_pred C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCCcchHHHHHHHH
Q 040319 607 P-KVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWHNSELVREDM 669 (812)
Q Consensus 607 p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 669 (812)
| |+.....+...|...++.++|+..++++++.+|++ ..+..|+.++.+.|+.++|.+.+++-
T Consensus 325 P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~-~~~~~La~~~~~~g~~~~A~~~~~~~ 387 (398)
T PRK10747 325 GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDA-YDYAWLADALDRLHKPEEAAAMRRDG 387 (398)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 6 45567788888999999999999999999999984 56789999999999999999998865
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.9e-11 Score=125.44 Aligned_cols=254 Identities=15% Similarity=0.091 Sum_probs=76.1
Q ss_pred HHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHH-HhccchhhhhHHHHHhhHHHhcCCCchhHHHHHHHHHHhcCCH
Q 040319 307 AGYCKNGKAMEALGLFVKLLEEGLVLTEFTLTSVVN-ACGLIMEAKLSEQIHGFVMKFGLGSNDCIEAALLDMLTRCGRM 385 (812)
Q Consensus 307 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~-a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~ 385 (812)
..+.+.|++++|++++++.......|+...|-.++. .+-..++.+.+.+.++.+...+.. +...+..++.. ...+++
T Consensus 16 ~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~~ 93 (280)
T PF13429_consen 16 RLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGDP 93 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-cccccc
Confidence 334444555555555533333222233333322222 222234444444444444433222 33334444444 466667
Q ss_pred HHHHHHHhcCCCCCCceeeeHHHHHHHHHcCChhhHHHHHHHhcccCCCCCChhhHHHHHHHhcCccchHHHHHHHHHHH
Q 040319 386 ADAEKMFYRWPTDRDDSIIWTSMICGYARSGKPEHAILLFHQSQSEATVVPDEIALTSVLGVCGTLGFHEMGKQIHSYAL 465 (812)
Q Consensus 386 ~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~ 465 (812)
++|.+++...-...++...+..++..+.+.++++++.+++.+........++...|..+...+.+.|+.+.|...+..++
T Consensus 94 ~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al 173 (280)
T PF13429_consen 94 EEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKAL 173 (280)
T ss_dssp ------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred cccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 77776665543222335556666777777777777777777765422233444455555555666666666666666666
Q ss_pred HhCCCCchhHHHHHHHHhhhcCCHHHHHHHHccCC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHH
Q 040319 466 KTGFSSDLGVANSMVSMYFKCCNMSNAIKAFNKMP---SHDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPD-AIT 541 (812)
Q Consensus 466 ~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t 541 (812)
+.. +.|..+.+.++..+...|+.+++..++.... ..|...|..+..+|...|++++|+..|++..+ ..|+ ...
T Consensus 174 ~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~--~~p~d~~~ 250 (280)
T PF13429_consen 174 ELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALK--LNPDDPLW 250 (280)
T ss_dssp HH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHH--HSTT-HHH
T ss_pred HcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccc--cccccccc
Confidence 543 2245555666666666666666555554432 24455566666666666666666666666665 4453 344
Q ss_pred HHHHHHHhcCCCCchHHHHHHHHHHh
Q 040319 542 FVLIISAYRYTNLNLVDSCRKLFLSM 567 (812)
Q Consensus 542 ~~~ll~a~~~~~~g~~~~a~~~~~~m 567 (812)
...+..++.. .|..++|.++.+..
T Consensus 251 ~~~~a~~l~~--~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 251 LLAYADALEQ--AGRKDEALRLRRQA 274 (280)
T ss_dssp HHHHHHHHT-----------------
T ss_pred cccccccccc--cccccccccccccc
Confidence 4455555555 66666666655544
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.9e-11 Score=87.54 Aligned_cols=50 Identities=34% Similarity=0.543 Sum_probs=48.4
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcC
Q 040319 502 HDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDAITFVLIISAYRY 551 (812)
Q Consensus 502 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~ 551 (812)
||+++||++|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 89999999999999999999999999999999999999999999999874
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.9e-08 Score=100.02 Aligned_cols=415 Identities=12% Similarity=0.095 Sum_probs=278.1
Q ss_pred ChhHHHHHhccCCC---CCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHhccchhhhhHHHHHhh
Q 040319 283 YVDLAVEIFDKMPE---KNSVSYNALLAGYCKNGKAMEALGLFVKLLEEGLVLTEFTLTSVVNACGLIMEAKLSEQIHGF 359 (812)
Q Consensus 283 ~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~ 359 (812)
++..|..+|++... +++..|---+..=.++.....|..+++..+..=...|...|.-+ -.=-..|++..+++++..
T Consensus 88 e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~-ymEE~LgNi~gaRqifer 166 (677)
T KOG1915|consen 88 EIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYI-YMEEMLGNIAGARQIFER 166 (677)
T ss_pred HHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHH-HHHHHhcccHHHHHHHHH
Confidence 44445556655543 45555666666666667777777777766654444444433321 122345777777777776
Q ss_pred HHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCCceeeeHHHHHHHHHcCChhhHHHHHHHhcccCCCCCChh
Q 040319 360 VMKFGLGSNDCIEAALLDMLTRCGRMADAEKMFYRWPTDRDDSIIWTSMICGYARSGKPEHAILLFHQSQSEATVVPDEI 439 (812)
Q Consensus 360 ~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~ 439 (812)
-.+ ..|+...+.+.|+.-.+...++.|+.++++..-..|++.+|--...-=.++|+...|..+|....+ .-.|..
T Consensus 167 W~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie---~~~~d~ 241 (677)
T KOG1915|consen 167 WME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIE---FLGDDE 241 (677)
T ss_pred HHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHH---HhhhHH
Confidence 654 478888899999998999999999999988664567688888887777888998888888887765 223333
Q ss_pred hHHHHHHHh----cCccchHHHHHHHHHHHHhCCCC-chhHHHHHHHHhhhcCCHHHHHHH--------HccCCC---CC
Q 040319 440 ALTSVLGVC----GTLGFHEMGKQIHSYALKTGFSS-DLGVANSMVSMYFKCCNMSNAIKA--------FNKMPS---HD 503 (812)
Q Consensus 440 t~~~ll~a~----~~~~~~~~a~~~~~~~~~~g~~~-~~~~~~~Li~~y~k~g~~~~A~~~--------f~~~~~---~~ 503 (812)
.-..+..++ .....++.|.-++..++..-... ....|..+...=-+-|+....... ++.+.. -|
T Consensus 242 ~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~n 321 (677)
T KOG1915|consen 242 EAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYN 321 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCC
Confidence 333444444 34567888888888888743221 244555555544455654433322 222222 45
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH--HH---HHHH--HHHh-cCCCCchHHHHHHHHHHhhhhcCccC
Q 040319 504 IVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDA--IT---FVLI--ISAY-RYTNLNLVDSCRKLFLSMKTIYNIEP 575 (812)
Q Consensus 504 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~--~t---~~~l--l~a~-~~~~~g~~~~a~~~~~~m~~~~~~~p 575 (812)
-.+|--.+..-...|+.+...++|++.+.. ++|-. .. |..| =-+| ......+++.+.++|+...+ +.|
T Consensus 322 YDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~---lIP 397 (677)
T KOG1915|consen 322 YDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD---LIP 397 (677)
T ss_pred chHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh---hcC
Confidence 577877788778889999999999999874 56632 11 1111 1121 11126788899999998876 445
Q ss_pred -CcchHHHHHHH----HhhcCChHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHH
Q 040319 576 -TSEHYASLVSV----LGYWGFLEEAEETINNMP-FQPKVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILV 649 (812)
Q Consensus 576 -~~~~y~~li~~----l~~~g~~~~A~~~~~~m~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 649 (812)
...+++-+--+ ..|+.++..|.+++-... .-|...++...+..-.+.++++....++++.++..|.|..++...
T Consensus 398 HkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~ky 477 (677)
T KOG1915|consen 398 HKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKY 477 (677)
T ss_pred cccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHH
Confidence 45566555444 457889999999987754 678888999999998999999999999999999999999999999
Q ss_pred HhhhhhCCCcchHHHHHHHHHhCCCCCCCceeEEEECCEEEEEeeCCCCCcchHHHHHHHHH
Q 040319 650 SNLYSSSGRWHNSELVREDMREKGFRKHPSRSWIIHQNKVHSFYVRDKSHPREKDIYSGLEI 711 (812)
Q Consensus 650 ~~~y~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~i~~~l~~ 711 (812)
+.+-...|++|.|..++....++.....|..-|- ....|-.....+..+..+|..|.+
T Consensus 478 aElE~~LgdtdRaRaifelAi~qp~ldmpellwk----aYIdFEi~~~E~ekaR~LYerlL~ 535 (677)
T KOG1915|consen 478 AELETSLGDTDRARAIFELAISQPALDMPELLWK----AYIDFEIEEGEFEKARALYERLLD 535 (677)
T ss_pred HHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHH----HhhhhhhhcchHHHHHHHHHHHHH
Confidence 9999999999999999998876655444544441 001333333445556666665543
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.24 E-value=5.3e-10 Score=111.50 Aligned_cols=197 Identities=9% Similarity=0.004 Sum_probs=164.5
Q ss_pred CchhHHHHHHHHhhhcCCHHHHHHHHccCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHH
Q 040319 471 SDLGVANSMVSMYFKCCNMSNAIKAFNKMPS---HDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDA-ITFVLII 546 (812)
Q Consensus 471 ~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll 546 (812)
.....+..+...|.+.|++++|...|++..+ .+...|..+...|...|++++|.+.+++..+ ..|+. ..+..+.
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~~~ 106 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALT--LNPNNGDVLNNYG 106 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCHHHHHHHH
Confidence 3456777888999999999999999987654 3467888899999999999999999999998 44543 5566666
Q ss_pred HHhcCCCCchHHHHHHHHHHhhhhcCccCCcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCC
Q 040319 547 SAYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLEEAEETINNMP-FQP-KVSVWRALLDSCRIRLN 624 (812)
Q Consensus 547 ~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~ 624 (812)
..+.. .|++++|.+.|+...+..........+..+..++.+.|++++|.+.+++.. ..| +...|..+...+...|+
T Consensus 107 ~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 184 (234)
T TIGR02521 107 TFLCQ--QGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQ 184 (234)
T ss_pred HHHHH--cccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCC
Confidence 77777 999999999999988632222345678888999999999999999998854 445 46678888888999999
Q ss_pred HHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCCcchHHHHHHHHHh
Q 040319 625 TTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWHNSELVREDMRE 671 (812)
Q Consensus 625 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 671 (812)
.+.|...++++++..|.++..+..++.++...|++++|.++.+.+..
T Consensus 185 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 185 YKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 99999999999999898888999999999999999999999888754
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.24 E-value=2e-06 Score=90.45 Aligned_cols=128 Identities=11% Similarity=0.142 Sum_probs=84.9
Q ss_pred hHHHHHHHhcCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHhhhcCCHHHHHHHHccCCC----CCh-hHHHHHHHHH
Q 040319 440 ALTSVLGVCGTLGFHEMGKQIHSYALKTGFSSDLGVANSMVSMYFKCCNMSNAIKAFNKMPS----HDI-VSWNGLIAGH 514 (812)
Q Consensus 440 t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~----~~~-~~~~~li~~~ 514 (812)
.|+..++.--..|-++..+.+++.++...+.....+-| ..-.+-...-++++.+++++-.. |++ ..||+-+.-+
T Consensus 479 iWs~y~DleEs~gtfestk~vYdriidLriaTPqii~N-yAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkf 557 (835)
T KOG2047|consen 479 IWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIIN-YAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKF 557 (835)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHH-HHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHH
Confidence 44555555566678888999999998877643332222 22234455668899999987554 665 4788776655
Q ss_pred Hh---cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCchHHHHHHHHHHhhh
Q 040319 515 LL---HRQGDEALAVWSSMEKASIKPDAITFVLIISAYRYTNLNLVDSCRKLFLSMKT 569 (812)
Q Consensus 515 ~~---~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~ 569 (812)
.+ ....+.|..+|++.++ |..|...-+..|+-|-...+-|....|.+++++...
T Consensus 558 i~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~ 614 (835)
T KOG2047|consen 558 IKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS 614 (835)
T ss_pred HHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 43 2357899999999999 677776544444443222236888888888887654
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.23 E-value=6.2e-09 Score=112.57 Aligned_cols=294 Identities=13% Similarity=0.012 Sum_probs=144.7
Q ss_pred HhCCChHHHHHHHHHHHHcCCCCCHhHH-HHHHHHhccchhhhhHHHHHhhHHHhcCCCchhHHHHHHHHHHhcCCHHHH
Q 040319 310 CKNGKAMEALGLFVKLLEEGLVLTEFTL-TSVVNACGLIMEAKLSEQIHGFVMKFGLGSNDCIEAALLDMLTRCGRMADA 388 (812)
Q Consensus 310 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~-~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A 388 (812)
...|+++.|.+.+.+..+. .|+...+ ...-.+....|+.+.+.+.+..+.+....+...+.-.....+...|+++.|
T Consensus 95 ~~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred HhCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHH
Confidence 4568888888888776654 3443222 222334445566666666665554433222222333334555555555555
Q ss_pred HHHHhcCCCC-CCceeeeHHHHHHHHHcCChhhHHHHHHHhcccCCCCCChhhHHHHHHHhcCccchHHHHHHHHHHHHh
Q 040319 389 EKMFYRWPTD-RDDSIIWTSMICGYARSGKPEHAILLFHQSQSEATVVPDEIALTSVLGVCGTLGFHEMGKQIHSYALKT 467 (812)
Q Consensus 389 ~~~f~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~ 467 (812)
...++.+... +.+...+..+...+.+.|++++|.+++....+ .+..+. ..+..+-.
T Consensus 173 l~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k-~~~~~~-~~~~~l~~--------------------- 229 (409)
T TIGR00540 173 RHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAK-AGLFDD-EEFADLEQ--------------------- 229 (409)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHH-cCCCCH-HHHHHHHH---------------------
Confidence 5555554422 22333444555555555555555555555554 221111 10100000
Q ss_pred CCCCchhHHHHHHHHhhhcCCHHHHHHHHccCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH-
Q 040319 468 GFSSDLGVANSMVSMYFKCCNMSNAIKAFNKMPS---HDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDAITFV- 543 (812)
Q Consensus 468 g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~- 543 (812)
..+..+++.-......+......+..++ .++..+..+...+...|+.++|.+++++..+ ..||.....
T Consensus 230 ------~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~--~~pd~~~~~~ 301 (409)
T TIGR00540 230 ------KAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLK--KLGDDRAISL 301 (409)
T ss_pred ------HHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHh--hCCCcccchh
Confidence 0111111111122233444455555543 4777888888889999999999999999888 566664210
Q ss_pred HHHHHhcCCCCchHHHHHHHHHHhhhhcCccCCcchHHHHHHHHhhcCChHHHHHHHHh--C-CCCCCHHHHHHHHHHHH
Q 040319 544 LIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLEEAEETINN--M-PFQPKVSVWRALLDSCR 620 (812)
Q Consensus 544 ~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~--m-~~~p~~~~~~~ll~~~~ 620 (812)
.++..+.....++.+.+.+.++...+...-.|+.....++..++.+.|++++|.+.|+. . ...||...+..+...+.
T Consensus 302 ~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~ 381 (409)
T TIGR00540 302 PLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFD 381 (409)
T ss_pred HHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHH
Confidence 12222221114556666666666554221111113344555555555555555555552 1 23455444444444455
Q ss_pred hcCCHHHHHHHHHHHH
Q 040319 621 IRLNTTIGKRVAKHIL 636 (812)
Q Consensus 621 ~~~~~~~a~~~~~~~~ 636 (812)
..|+.+.|.+++++.+
T Consensus 382 ~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 382 QAGDKAEAAAMRQDSL 397 (409)
T ss_pred HcCCHHHHHHHHHHHH
Confidence 5555555555554443
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.22 E-value=2e-09 Score=116.28 Aligned_cols=291 Identities=9% Similarity=-0.022 Sum_probs=194.9
Q ss_pred HHHHHHH--hhCChhHHHHHhccCCC--CCc-ccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHhccc
Q 040319 273 EIIIAYM--EFGYVDLAVEIFDKMPE--KNS-VSYNALLAGYCKNGKAMEALGLFVKLLEEGLVLTEFTLTSVVNACGLI 347 (812)
Q Consensus 273 ~li~~~~--~~g~~~~A~~~f~~m~~--~d~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 347 (812)
.+..++. ..|+++.|.+.+.+..+ |+. ..+-.....+.+.|+++.|.+.|.+..+....+....-..........
T Consensus 87 ~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~ 166 (409)
T TIGR00540 87 QTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQ 166 (409)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHC
Confidence 3444444 57999999999988765 332 223344567888999999999999987654222222333345667778
Q ss_pred hhhhhHHHHHhhHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCC-ceeeeHHH----HHHHHHcCChhhHH
Q 040319 348 MEAKLSEQIHGFVMKFGLGSNDCIEAALLDMLTRCGRMADAEKMFYRWPTDRD-DSIIWTSM----ICGYARSGKPEHAI 422 (812)
Q Consensus 348 ~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~-~~~~~~~l----i~~~~~~g~~~~A~ 422 (812)
++.+.|...++.+.+.. +.+..+...+...|.+.|++++|.+.+..+.+... +...+..+ ..++...+..+++.
T Consensus 167 ~~~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~ 245 (409)
T TIGR00540 167 NELHAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGI 245 (409)
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence 99999999999999886 44667888999999999999999999988873211 11111111 01111111111112
Q ss_pred HHHHHhcccCCCCCChhhHHHHHHHhcCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHhhhcCCHHHHHHHHccCCC-
Q 040319 423 LLFHQSQSEATVVPDEIALTSVLGVCGTLGFHEMGKQIHSYALKTGFSSDLGVANSMVSMYFKCCNMSNAIKAFNKMPS- 501 (812)
Q Consensus 423 ~~~~~m~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~- 501 (812)
+.+..+.. . .|+ ..+.++..+..+...+...|+.+.|.+++++..+
T Consensus 246 ~~L~~~~~-~--~p~------------------------------~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~ 292 (409)
T TIGR00540 246 DGLLNWWK-N--QPR------------------------------HRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK 292 (409)
T ss_pred HHHHHHHH-H--CCH------------------------------HHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh
Confidence 22222221 0 000 0123667777788888888888888888887765
Q ss_pred -CChhH---HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH--HH-HHHHHHhcCCCCchHHHHHHHHHHhhhhcCcc
Q 040319 502 -HDIVS---WNGLIAGHLLHRQGDEALAVWSSMEKASIKPDAI--TF-VLIISAYRYTNLNLVDSCRKLFLSMKTIYNIE 574 (812)
Q Consensus 502 -~~~~~---~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~--t~-~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~ 574 (812)
||... +..........++.+.+++.+++..+ ..|+.. .+ .++...|.+ .|++++|.++|+.... ....
T Consensus 293 ~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk--~~p~~~~~~ll~sLg~l~~~--~~~~~~A~~~le~a~a-~~~~ 367 (409)
T TIGR00540 293 LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAK--NVDDKPKCCINRALGQLLMK--HGEFIEAADAFKNVAA-CKEQ 367 (409)
T ss_pred CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHH--hCCCChhHHHHHHHHHHHHH--cccHHHHHHHHHHhHH-hhcC
Confidence 44332 12222233445778889999998888 678776 43 355556777 8999999999995332 3457
Q ss_pred CCcchHHHHHHHHhhcCChHHHHHHHHh
Q 040319 575 PTSEHYASLVSVLGYWGFLEEAEETINN 602 (812)
Q Consensus 575 p~~~~y~~li~~l~~~g~~~~A~~~~~~ 602 (812)
|+...+..+..++.+.|+.++|.+++++
T Consensus 368 p~~~~~~~La~ll~~~g~~~~A~~~~~~ 395 (409)
T TIGR00540 368 LDANDLAMAADAFDQAGDKAEAAAMRQD 395 (409)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9988899999999999999999999887
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.19 E-value=4e-11 Score=85.79 Aligned_cols=50 Identities=36% Similarity=0.707 Sum_probs=48.0
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHh
Q 040319 62 PNVVSFTSLISGLAKLGREEEAIELFFRMRSEGIVPNEHSFVAILTACIR 111 (812)
Q Consensus 62 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 111 (812)
||+++||++|++|++.|++++|+++|++|.+.|++||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 89999999999999999999999999999999999999999999999874
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.9e-08 Score=102.69 Aligned_cols=194 Identities=15% Similarity=0.097 Sum_probs=144.5
Q ss_pred CCCchhHHHHHHHHhhhcCCHHHHHHHHccCCCC---ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHH
Q 040319 469 FSSDLGVANSMVSMYFKCCNMSNAIKAFNKMPSH---DIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDA-ITFVL 544 (812)
Q Consensus 469 ~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ 544 (812)
.+..+.+|-++.-.|.-.|+..+|++.|.+...- -...|-.....|+-.|..+.|+..+...-+ .-|-. ..+.-
T Consensus 308 yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAar--l~~G~hlP~LY 385 (611)
T KOG1173|consen 308 YPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAAR--LMPGCHLPSLY 385 (611)
T ss_pred CCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHH--hccCCcchHHH
Confidence 3445666777777777778888888888765542 235788888888888888888888877766 33332 33444
Q ss_pred HHHHhcCCCCchHHHHHHHHHHhhhhcCccCC-cchHHHHHHHHhhcCChHHHHHHHHhCC--------CCC-CHHHHHH
Q 040319 545 IISAYRYTNLNLVDSCRKLFLSMKTIYNIEPT-SEHYASLVSVLGYWGFLEEAEETINNMP--------FQP-KVSVWRA 614 (812)
Q Consensus 545 ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g~~~~A~~~~~~m~--------~~p-~~~~~~~ 614 (812)
+..-|.. .+..+.|.++|.+... +-|+ +..++-+.-+.-..+.+.+|...|+... -.+ -.++|+.
T Consensus 386 lgmey~~--t~n~kLAe~Ff~~A~a---i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~N 460 (611)
T KOG1173|consen 386 LGMEYMR--TNNLKLAEKFFKQALA---IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNN 460 (611)
T ss_pred HHHHHHH--hccHHHHHHHHHHHHh---cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHh
Confidence 4445666 7788888888877754 5554 5666666666667778888888777643 111 3456788
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCCcchHHHHHHHH
Q 040319 615 LLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWHNSELVREDM 669 (812)
Q Consensus 615 ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 669 (812)
|..+|++.+..++|+..+++++.+.|+++.+|..++-+|...|+++.|.+.+.+.
T Consensus 461 LGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKa 515 (611)
T KOG1173|consen 461 LGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKA 515 (611)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 8888999999999999999999999999999999999999999999999998876
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.1e-06 Score=93.13 Aligned_cols=529 Identities=13% Similarity=0.081 Sum_probs=302.3
Q ss_pred ccCChhhHHHHHhcCCC-CChh-hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHH
Q 040319 45 KLGHVADAYKIFYGLSS-PNVV-SFTSLISGLAKLGREEEAIELFFRMRSEGIVPNEHSFVAILTACIRLLELELGFQIH 122 (812)
Q Consensus 45 ~~g~~~~A~~~f~~~~~-~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 122 (812)
..|+++.|...++.... |+.. .|-.+...-...|+.--|.++ ++..|++..++.+|
T Consensus 456 d~~df~ra~afles~~~~~da~amw~~laelale~~nl~iaerc----------------------faai~dvak~r~lh 513 (1636)
T KOG3616|consen 456 DDGDFDRATAFLESLEMGPDAEAMWIRLAELALEAGNLFIAERC----------------------FAAIGDVAKARFLH 513 (1636)
T ss_pred ccCchHHHHHHHHhhccCccHHHHHHHHHHHHHHhccchHHHHH----------------------HHHHHHHHHHHHHH
Confidence 34566666666665442 4432 344444444444544444433 34445556666655
Q ss_pred HHHH-------Hh-CCCCchHHHHHHHHHhhhcCCCHHHHHHHHhcCCCCCcchHHHHHHHHHcCCChhHHHHHHHHhHh
Q 040319 123 ALIV-------KM-GCVDSVFVTNALMGLYGKFSFCLDYLLKLFDELPHKDTVSWNTVISSVVNEFEYEKAFELFRDMKR 194 (812)
Q Consensus 123 ~~~~-------~~-g~~~~~~~~~~li~~y~~~g~~~~~a~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 194 (812)
+... +. |-..+.+-..+++.+..+ .+.+|..+|-+-. ++ ...|..|-....+++|+.+-+..
T Consensus 514 d~~eiadeas~~~ggdgt~fykvra~lail~k---kfk~ae~ifleqn--~t---e~aigmy~~lhkwde~i~lae~~-- 583 (1636)
T KOG3616|consen 514 DILEIADEASIEIGGDGTDFYKVRAMLAILEK---KFKEAEMIFLEQN--AT---EEAIGMYQELHKWDEAIALAEAK-- 583 (1636)
T ss_pred HHHHHHHHHhHhhCCCCchHHHHHHHHHHHHh---hhhHHHHHHHhcc--cH---HHHHHHHHHHHhHHHHHHHHHhc--
Confidence 5432 11 223344555666666665 7788888775421 11 23445555566677777765433
Q ss_pred cCCCCCCcchHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhc--CCCCcchhHH
Q 040319 195 DNGFTVDYFTISTLLTACTGCFVLMEGRAVHAHAIRIGLGANLSVNNALIGFYTKCGRVKDVVALLER--MPVMDIITLT 272 (812)
Q Consensus 195 ~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~--~~~~~~~~~~ 272 (812)
|.+.-...-.+-++++...|+-+.|-++- ..+-. .-+.|..|.+.|.+..|.+.... ....|.....
T Consensus 584 --~~p~~eklk~sy~q~l~dt~qd~ka~elk--------~sdgd-~laaiqlyika~~p~~a~~~a~n~~~l~~de~il~ 652 (1636)
T KOG3616|consen 584 --GHPALEKLKRSYLQALMDTGQDEKAAELK--------ESDGD-GLAAIQLYIKAGKPAKAARAALNDEELLADEEILE 652 (1636)
T ss_pred --CChHHHHHHHHHHHHHHhcCchhhhhhhc--------cccCc-cHHHHHHHHHcCCchHHHHhhcCHHHhhccHHHHH
Confidence 22211122234455555555555543331 11111 23567889999999888775432 2345666777
Q ss_pred HHHHHHHhhCChhHHHHHhccCCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHH-HHHhccchhhh
Q 040319 273 EIIIAYMEFGYVDLAVEIFDKMPEKNSVSYNALLAGYCKNGKAMEALGLFVKLLEEGLVLTEFTLTSV-VNACGLIMEAK 351 (812)
Q Consensus 273 ~li~~~~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l-l~a~~~~~~~~ 351 (812)
.+..++.+..-+++|-.+|+++..+|- -+..|-+-.-+.+|+++-+-.-.. ..+++..- -.-+...|+++
T Consensus 653 ~ia~alik~elydkagdlfeki~d~dk-----ale~fkkgdaf~kaielarfafp~----evv~lee~wg~hl~~~~q~d 723 (1636)
T KOG3616|consen 653 HIAAALIKGELYDKAGDLFEKIHDFDK-----ALECFKKGDAFGKAIELARFAFPE----EVVKLEEAWGDHLEQIGQLD 723 (1636)
T ss_pred HHHHHHHhhHHHHhhhhHHHHhhCHHH-----HHHHHHcccHHHHHHHHHHhhCcH----HHhhHHHHHhHHHHHHHhHH
Confidence 788888888888999999988865432 222232222344444443322110 00110000 00011122222
Q ss_pred hHHHHHhhHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCC-ceeeeHHHHHHHHHcCChhhHHHHHHHhcc
Q 040319 352 LSEQIHGFVMKFGLGSNDCIEAALLDMLTRCGRMADAEKMFYRWPTDRD-DSIIWTSMICGYARSGKPEHAILLFHQSQS 430 (812)
Q Consensus 352 ~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 430 (812)
.+..-+-+.. ..-.-+.+-.....+.+|..+++.+. .+. -.--|..+...|+..|+++.|.++|.+.-.
T Consensus 724 aainhfiea~---------~~~kaieaai~akew~kai~ildniq-dqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~~ 793 (1636)
T KOG3616|consen 724 AAINHFIEAN---------CLIKAIEAAIGAKEWKKAISILDNIQ-DQKTASGYYGEIADHYANKGDFEIAEELFTEADL 793 (1636)
T ss_pred HHHHHHHHhh---------hHHHHHHHHhhhhhhhhhHhHHHHhh-hhccccccchHHHHHhccchhHHHHHHHHHhcch
Confidence 2222111110 01112334445667777888887777 443 122355666788888888888888865322
Q ss_pred cCCCCCChhhHHHHHHHhcCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHhhhcCCHHHHHHHHccCCCCChhHHHHH
Q 040319 431 EATVVPDEIALTSVLGVCGTLGFHEMGKQIHSYALKTGFSSDLGVANSMVSMYFKCCNMSNAIKAFNKMPSHDIVSWNGL 510 (812)
Q Consensus 431 ~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~l 510 (812)
++-.+..|.+.|.++.|.++-... .|.+.....|-+-..-+-+.|++.+|.+++-.+..|+. -
T Consensus 794 ----------~~dai~my~k~~kw~da~kla~e~--~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~-----a 856 (1636)
T KOG3616|consen 794 ----------FKDAIDMYGKAGKWEDAFKLAEEC--HGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDK-----A 856 (1636)
T ss_pred ----------hHHHHHHHhccccHHHHHHHHHHh--cCchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchH-----H
Confidence 344566777888877776654433 23344555566666667778888888888888877775 3
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCCcchHHHHHHHHh
Q 040319 511 IAGHLLHRQGDEALAVWSSMEKASIKPDA--ITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLG 588 (812)
Q Consensus 511 i~~~~~~g~~~~A~~l~~~m~~~g~~pd~--~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~ 588 (812)
|..|-++|..+..+++.++ ..||. .|...+..-+.. .|+++.|.+.|-+... |.+-+++|-
T Consensus 857 iqmydk~~~~ddmirlv~k-----~h~d~l~dt~~~f~~e~e~--~g~lkaae~~flea~d----------~kaavnmyk 919 (1636)
T KOG3616|consen 857 IQMYDKHGLDDDMIRLVEK-----HHGDHLHDTHKHFAKELEA--EGDLKAAEEHFLEAGD----------FKAAVNMYK 919 (1636)
T ss_pred HHHHHhhCcchHHHHHHHH-----hChhhhhHHHHHHHHHHHh--ccChhHHHHHHHhhhh----------HHHHHHHhh
Confidence 6678888888888877765 45554 455555555666 8999999988865543 677889999
Q ss_pred hcCChHHHHHHHHhCC---C-CCCHHHHHHHH------HHHHhcCCHHHHHHH------HHHHHcc-----CCCCCchHH
Q 040319 589 YWGFLEEAEETINNMP---F-QPKVSVWRALL------DSCRIRLNTTIGKRV------AKHILAM-----EPQDPATYI 647 (812)
Q Consensus 589 ~~g~~~~A~~~~~~m~---~-~p~~~~~~~ll------~~~~~~~~~~~a~~~------~~~~~~~-----~p~~~~~~~ 647 (812)
..+.+++|..+-+.-. . +.-...|.--+ ....++|.++.|... ++-++++ ...-+..+.
T Consensus 920 ~s~lw~dayriaktegg~n~~k~v~flwaksiggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k~k~~~vhl 999 (1636)
T KOG3616|consen 920 ASELWEDAYRIAKTEGGANAEKHVAFLWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKDKMGEVHL 999 (1636)
T ss_pred hhhhHHHHHHHHhccccccHHHHHHHHHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhccCccchh
Confidence 9999999999887633 1 11133443322 234467777666553 3333332 234567888
Q ss_pred HHHhhhhhCCCcchHHHHHHHH
Q 040319 648 LVSNLYSSSGRWHNSELVREDM 669 (812)
Q Consensus 648 ~l~~~y~~~g~~~~a~~~~~~m 669 (812)
.++.-+-..|++++|.+-+-+.
T Consensus 1000 k~a~~ledegk~edaskhyvea 1021 (1636)
T KOG3616|consen 1000 KLAMFLEDEGKFEDASKHYVEA 1021 (1636)
T ss_pred HHhhhhhhccchhhhhHhhHHH
Confidence 8999999999999997655443
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.4e-05 Score=88.15 Aligned_cols=158 Identities=15% Similarity=0.150 Sum_probs=123.5
Q ss_pred CCHHHHHHHHccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCchHHHHHHHHHH
Q 040319 487 CNMSNAIKAFNKMPSHDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDAITFVLIISAYRYTNLNLVDSCRKLFLS 566 (812)
Q Consensus 487 g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~g~~~~a~~~~~~ 566 (812)
+.++.|.+.-++..+| ..|..+..+-.+.|...+|++-|-+. -|...|..++.++++ .|.+++-.+++..
T Consensus 1089 ~~ldRA~efAe~~n~p--~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~--~~~~edLv~yL~M 1158 (1666)
T KOG0985|consen 1089 GSLDRAYEFAERCNEP--AVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASR--TGKYEDLVKYLLM 1158 (1666)
T ss_pred hhHHHHHHHHHhhCCh--HHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHh--cCcHHHHHHHHHH
Confidence 4445555554444433 56999999999999999998877542 355789999999999 9999999999987
Q ss_pred hhhhcCccCCcchHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchH
Q 040319 567 MKTIYNIEPTSEHYASLVSVLGYWGFLEEAEETINNMPFQPKVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATY 646 (812)
Q Consensus 567 m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 646 (812)
.++ ..-+|.+ =+.||-+|++.+++.|-++++. .||..-...+.+-|...|.++.|+-++.. .+.|
T Consensus 1159 aRk-k~~E~~i--d~eLi~AyAkt~rl~elE~fi~----gpN~A~i~~vGdrcf~~~~y~aAkl~y~~--------vSN~ 1223 (1666)
T KOG0985|consen 1159 ARK-KVREPYI--DSELIFAYAKTNRLTELEEFIA----GPNVANIQQVGDRCFEEKMYEAAKLLYSN--------VSNF 1223 (1666)
T ss_pred HHH-hhcCccc--hHHHHHHHHHhchHHHHHHHhc----CCCchhHHHHhHHHhhhhhhHHHHHHHHH--------hhhH
Confidence 765 4444544 4689999999999999888874 57888888889999999999988877753 4678
Q ss_pred HHHHhhhhhCCCcchHHHHHHHH
Q 040319 647 ILVSNLYSSSGRWHNSELVREDM 669 (812)
Q Consensus 647 ~~l~~~y~~~g~~~~a~~~~~~m 669 (812)
..|+..+...|.+..|..--++.
T Consensus 1224 a~La~TLV~LgeyQ~AVD~aRKA 1246 (1666)
T KOG0985|consen 1224 AKLASTLVYLGEYQGAVDAARKA 1246 (1666)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhc
Confidence 88888888899988887765544
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.9e-07 Score=92.80 Aligned_cols=307 Identities=13% Similarity=0.030 Sum_probs=212.0
Q ss_pred CCCCHhHHHHHHHHhccc--hhhhhHHHHHhhHHH-hcCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCC-ceeee
Q 040319 330 LVLTEFTLTSVVNACGLI--MEAKLSEQIHGFVMK-FGLGSNDCIEAALLDMLTRCGRMADAEKMFYRWPTDRD-DSIIW 405 (812)
Q Consensus 330 ~~p~~~t~~~ll~a~~~~--~~~~~a~~i~~~~~~-~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~-~~~~~ 405 (812)
+.|...+...-+.+++.. ++-..+.+.+-.+.+ .-++.|+....++.+.|...|+.++|...|++...-.| ++...
T Consensus 190 ~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~M 269 (564)
T KOG1174|consen 190 VPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAM 269 (564)
T ss_pred cCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhH
Confidence 445555555555554433 333334444444433 56777889999999999999999999999988662222 22223
Q ss_pred HHHHHHHHHcCChhhHHHHHHHhcccCCCCCChhhHHHHHHHhcCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHhhh
Q 040319 406 TSMICGYARSGKPEHAILLFHQSQSEATVVPDEIALTSVLGVCGTLGFHEMGKQIHSYALKTGFSSDLGVANSMVSMYFK 485 (812)
Q Consensus 406 ~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k 485 (812)
....-.+.+.|+++..-.+...... . .+-...-|-.-....-...+++.|..+-+..++..- .+...+-.-...+..
T Consensus 270 D~Ya~LL~~eg~~e~~~~L~~~Lf~-~-~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~-r~~~alilKG~lL~~ 346 (564)
T KOG1174|consen 270 DLYAVLLGQEGGCEQDSALMDYLFA-K-VKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEP-RNHEALILKGRLLIA 346 (564)
T ss_pred HHHHHHHHhccCHhhHHHHHHHHHh-h-hhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCc-ccchHHHhccHHHHh
Confidence 3333445678888887777666654 1 111111122222222345667777777777666431 233333333456677
Q ss_pred cCCHHHHHHHHccCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHH-HHhcCCCCchHHHH
Q 040319 486 CCNMSNAIKAFNKMPS---HDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPD-AITFVLII-SAYRYTNLNLVDSC 560 (812)
Q Consensus 486 ~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll-~a~~~~~~g~~~~a 560 (812)
.|+.++|.-.|+.... .+..+|..|+..|...|++.+|+-+-++..+ .-|+ ..+...+. ..|... ...-++|
T Consensus 347 ~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~--~~~~sA~~LtL~g~~V~~~d-p~~rEKA 423 (564)
T KOG1174|consen 347 LERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIR--LFQNSARSLTLFGTLVLFPD-PRMREKA 423 (564)
T ss_pred ccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHH--HhhcchhhhhhhcceeeccC-chhHHHH
Confidence 8999999999987654 5789999999999999999999998888776 3444 45555442 334321 3446789
Q ss_pred HHHHHHhhhhcCccCC-cchHHHHHHHHhhcCChHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcc
Q 040319 561 RKLFLSMKTIYNIEPT-SEHYASLVSVLGYWGFLEEAEETINNMP-FQPKVSVWRALLDSCRIRLNTTIGKRVAKHILAM 638 (812)
Q Consensus 561 ~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 638 (812)
.+++++-.+ +.|+ ...-+.+..++.+.|+.++++.++++.. ..||....+.|....+..+.+++|...+..++.+
T Consensus 424 Kkf~ek~L~---~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 424 KKFAEKSLK---INPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ 500 (564)
T ss_pred HHHHHhhhc---cCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 999887765 6677 5667788899999999999999999855 7899999999999999999999999999999999
Q ss_pred CCCCCch
Q 040319 639 EPQDPAT 645 (812)
Q Consensus 639 ~p~~~~~ 645 (812)
+|+|..+
T Consensus 501 dP~~~~s 507 (564)
T KOG1174|consen 501 DPKSKRT 507 (564)
T ss_pred CccchHH
Confidence 9986554
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.11 E-value=4.5e-07 Score=94.50 Aligned_cols=434 Identities=11% Similarity=0.059 Sum_probs=236.7
Q ss_pred hcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCcchhHHHHHHHHH--hhCChhHHHHH
Q 040319 213 TGCFVLMEGRAVHAHAIRIGLGANLSVNNALIGFYTKCGRVKDVVALLERMPVMDIITLTEIIIAYM--EFGYVDLAVEI 290 (812)
Q Consensus 213 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~li~~~~--~~g~~~~A~~~ 290 (812)
...+++++|.+....++..+ +.|...+..=+-+..+.+++++|..+.+.-........-.+=.+|| +.+..|+|+..
T Consensus 23 ~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrlnk~Dealk~ 101 (652)
T KOG2376|consen 23 GKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRLNKLDEALKT 101 (652)
T ss_pred ccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHcccHHHHHHH
Confidence 34444444444444444433 3333334444444555566666665444433222111111344555 46777777778
Q ss_pred hccCCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHh-HHHHHHHHhccchhhhhHHHHHh-hHHHhcCCC-
Q 040319 291 FDKMPEKNSVSYNALLAGYCKNGKAMEALGLFVKLLEEGLVLTEF-TLTSVVNACGLIMEAKLSEQIHG-FVMKFGLGS- 367 (812)
Q Consensus 291 f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~~~~~~a~~i~~-~~~~~g~~~- 367 (812)
++.....|......-.+.+.+.|++++|+.+|+.+.+.+..--.. .-..++.+-+ ..-. .+......|
T Consensus 102 ~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a---------~l~~~~~q~v~~v~e 172 (652)
T KOG2376|consen 102 LKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAA---------ALQVQLLQSVPEVPE 172 (652)
T ss_pred HhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH---------hhhHHHHHhccCCCc
Confidence 775555554455555667788888888888888887765432221 1122221111 1111 111112222
Q ss_pred -chhHHHHHHHHHHhcCCHHHHHHHHhcC--------CCCCC-c---eee-----eHHHHHHHHHcCChhhHHHHHHHhc
Q 040319 368 -NDCIEAALLDMLTRCGRMADAEKMFYRW--------PTDRD-D---SII-----WTSMICGYARSGKPEHAILLFHQSQ 429 (812)
Q Consensus 368 -~~~~~~~Li~~y~~~g~~~~A~~~f~~~--------~~~~~-~---~~~-----~~~li~~~~~~g~~~~A~~~~~~m~ 429 (812)
+-..+-.....+...|++.+|+++++.. . +.+ + ... ---|.-.+...|+..+|..++....
T Consensus 173 ~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~-~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i 251 (652)
T KOG2376|consen 173 DSYELLYNTACILIENGKYNQAIELLEKALRICREKLE-DEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDII 251 (652)
T ss_pred chHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhc-ccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 1112222344567788999998888765 2 111 0 111 1123445667899999999998887
Q ss_pred ccCCCCCChhhHHHH---HHHhcCccchHHH--------------HHHHHHHHHhCCCCchhHHHHHHHHhhhcCCHHHH
Q 040319 430 SEATVVPDEIALTSV---LGVCGTLGFHEMG--------------KQIHSYALKTGFSSDLGVANSMVSMYFKCCNMSNA 492 (812)
Q Consensus 430 ~~~g~~p~~~t~~~l---l~a~~~~~~~~~a--------------~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A 492 (812)
. . ..+|....... |.+...-.++..+ ......+.+ .-......-++|+.+|. +..+.+
T Consensus 252 ~-~-~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~-~qk~~i~~N~~lL~l~t--nk~~q~ 326 (652)
T KOG2376|consen 252 K-R-NPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSK-KQKQAIYRNNALLALFT--NKMDQV 326 (652)
T ss_pred H-h-cCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHH-HHHHHHHHHHHHHHHHh--hhHHHH
Confidence 6 2 34444322211 1222222222111 111111111 00112233345666665 455667
Q ss_pred HHHHccCCC--CChhHHHHHHHHHHh-cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCchHHHHHHHHH----
Q 040319 493 IKAFNKMPS--HDIVSWNGLIAGHLL-HRQGDEALAVWSSMEKASIKPDAITFVLIISAYRYTNLNLVDSCRKLFL---- 565 (812)
Q Consensus 493 ~~~f~~~~~--~~~~~~~~li~~~~~-~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~g~~~~a~~~~~---- 565 (812)
+++-...+. |....=+-+..++.. .....+|.+++...-+ -.|+......|+.+-.+...|+++.|.+++.
T Consensus 327 r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~--~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~ 404 (652)
T KOG2376|consen 327 RELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFAD--GHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLE 404 (652)
T ss_pred HHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhc--cCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Confidence 777666665 443333333333332 2357888888888877 5677744444444433333899999999998
Q ss_pred ----HhhhhcCccCCcchHHHHHHHHhhcCChHHHHHHHHhC--------CCCCC-HHHHHHHHHHHHhcCCHHHHHHHH
Q 040319 566 ----SMKTIYNIEPTSEHYASLVSVLGYWGFLEEAEETINNM--------PFQPK-VSVWRALLDSCRIRLNTTIGKRVA 632 (812)
Q Consensus 566 ----~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m--------~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~ 632 (812)
.+.+ +.-.+.+-..++.++.+.+.-+-|-+++.+. +-.+. ..+|.-+...-.++|+.+.|...+
T Consensus 405 ~~~ss~~~---~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~l 481 (652)
T KOG2376|consen 405 SWKSSILE---AKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLL 481 (652)
T ss_pred hhhhhhhh---hccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHH
Confidence 4443 2334556677888888888766555555442 22332 234444444455789999999999
Q ss_pred HHHHccCCCCCchHHHHHhhhhhCCCcchHHHHHHH
Q 040319 633 KHILAMEPQDPATYILVSNLYSSSGRWHNSELVRED 668 (812)
Q Consensus 633 ~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~ 668 (812)
+++++..|.|......++-.|+... .+.|..+-+.
T Consensus 482 eel~k~n~~d~~~l~~lV~a~~~~d-~eka~~l~k~ 516 (652)
T KOG2376|consen 482 EELVKFNPNDTDLLVQLVTAYARLD-PEKAESLSKK 516 (652)
T ss_pred HHHHHhCCchHHHHHHHHHHHHhcC-HHHHHHHhhc
Confidence 9999999999999999999998764 4555555443
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.07 E-value=2.1e-07 Score=96.52 Aligned_cols=278 Identities=17% Similarity=0.074 Sum_probs=156.3
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHhcCCCCc---chhHHHHHHHHHhhCChhHHHHHhccCCC---CCcccHHHHHHHH
Q 040319 236 NLSVNNALIGFYTKCGRVKDVVALLERMPVMD---IITLTEIIIAYMEFGYVDLAVEIFDKMPE---KNSVSYNALLAGY 309 (812)
Q Consensus 236 ~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~d~~~~~~li~~~ 309 (812)
+..+.-.-.+-+...+++.+..++++...+.| ...+..-|.++.+.|+..+-..+=.++.+ ...++|-++.--|
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YY 322 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYY 322 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHH
Confidence 33333344444444455555555544443222 22233334444444444333333333322 2334555555555
Q ss_pred HhCCChHHHHHHHHHHHHcCCCCC-HhHHHHHHHHhccchhhhhHHHHHhhHHHhcCCC-chhHHHHHHHHHHhcCCHHH
Q 040319 310 CKNGKAMEALGLFVKLLEEGLVLT-EFTLTSVVNACGLIMEAKLSEQIHGFVMKFGLGS-NDCIEAALLDMLTRCGRMAD 387 (812)
Q Consensus 310 ~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~-~~~~~~~Li~~y~~~g~~~~ 387 (812)
...|...+|.+.|.+...-. |. ...|...-.+++..+.-+++...+..+-+.=... -+..| +.--|.+.++++-
T Consensus 323 l~i~k~seARry~SKat~lD--~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LY--lgmey~~t~n~kL 398 (611)
T KOG1173|consen 323 LMIGKYSEARRYFSKATTLD--PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLY--LGMEYMRTNNLKL 398 (611)
T ss_pred HHhcCcHHHHHHHHHHhhcC--ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHH--HHHHHHHhccHHH
Confidence 55555555555555443211 11 1123333334444444444444444333321110 01111 1223667788888
Q ss_pred HHHHHhcCCC-CCCceeeeHHHHHHHHHcCChhhHHHHHHHhcccCCCCCChhhHHHHHHHhcCccchHHHHHHHHHHHH
Q 040319 388 AEKMFYRWPT-DRDDSIIWTSMICGYARSGKPEHAILLFHQSQSEATVVPDEIALTSVLGVCGTLGFHEMGKQIHSYALK 466 (812)
Q Consensus 388 A~~~f~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~ 466 (812)
|.+.|.+... .+.|+...+-+.-...+.+.+.+|..+|+.... ..++. . +
T Consensus 399 Ae~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~---~ik~~----------------------~----~ 449 (611)
T KOG1173|consen 399 AEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALE---VIKSV----------------------L----N 449 (611)
T ss_pred HHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHH---Hhhhc----------------------c----c
Confidence 8888876542 245566677766666667788888888876553 00000 0 0
Q ss_pred hCCCCchhHHHHHHHHhhhcCCHHHHHHHHccCC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 040319 467 TGFSSDLGVANSMVSMYFKCCNMSNAIKAFNKMP---SHDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDAITFV 543 (812)
Q Consensus 467 ~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~ 543 (812)
. ...-..+++.|...|.|++.+++|...|+... ..|..++.++.-.|...|+++.|++.|.+.+. +.||..+..
T Consensus 450 e-~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~ 526 (611)
T KOG1173|consen 450 E-KIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFIS 526 (611)
T ss_pred c-ccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHH
Confidence 0 00123456788899999999999999998754 47888999999999999999999999999988 999998887
Q ss_pred HHHHHh
Q 040319 544 LIISAY 549 (812)
Q Consensus 544 ~ll~a~ 549 (812)
.+|..+
T Consensus 527 ~lL~~a 532 (611)
T KOG1173|consen 527 ELLKLA 532 (611)
T ss_pred HHHHHH
Confidence 777644
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.06 E-value=2.6e-08 Score=106.42 Aligned_cols=230 Identities=16% Similarity=0.172 Sum_probs=170.1
Q ss_pred hhHHHHHHHhcCccchHHHHHHHHHHHHh-----CC-CCchh-HHHHHHHHhhhcCCHHHHHHHHccCCC----------
Q 040319 439 IALTSVLGVCGTLGFHEMGKQIHSYALKT-----GF-SSDLG-VANSMVSMYFKCCNMSNAIKAFNKMPS---------- 501 (812)
Q Consensus 439 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~-----g~-~~~~~-~~~~Li~~y~k~g~~~~A~~~f~~~~~---------- 501 (812)
.|...+...|...|+++.|..++...++. |. .|.+. ..+.+...|...+++++|..+|+++..
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 35556778888888888888888877754 21 12222 234477889999999999999887753
Q ss_pred CC-hhHHHHHHHHHHhcCChHHHHHHHHHHHH-----CCCCC-CH-HHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCc
Q 040319 502 HD-IVSWNGLIAGHLLHRQGDEALAVWSSMEK-----ASIKP-DA-ITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNI 573 (812)
Q Consensus 502 ~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~p-d~-~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~ 573 (812)
|. ..+++.|..+|...|++++|...+++..+ .|..+ .. .-++.+...|.. .+.+++|..+++...+.+.-
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~--~~~~Eea~~l~q~al~i~~~ 357 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQS--MNEYEEAKKLLQKALKIYLD 357 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHH--hcchhHHHHHHHHHHHHHHh
Confidence 22 35778888899999999988888877654 22222 33 235556667888 89999999999877664442
Q ss_pred cC--C----cchHHHHHHHHhhcCChHHHHHHHHhCC---------CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHc
Q 040319 574 EP--T----SEHYASLVSVLGYWGFLEEAEETINNMP---------FQPK-VSVWRALLDSCRIRLNTTIGKRVAKHILA 637 (812)
Q Consensus 574 ~p--~----~~~y~~li~~l~~~g~~~~A~~~~~~m~---------~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 637 (812)
.| + ..+|+.|..+|-..|+++||++++++.. ..+. ....+.|..+|...++.+.|.+.++....
T Consensus 358 ~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~ 437 (508)
T KOG1840|consen 358 APGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKD 437 (508)
T ss_pred hccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 22 2 4679999999999999999999998853 1232 45677788889888999988888877765
Q ss_pred c----CCC---CCchHHHHHhhhhhCCCcchHHHHHHHHH
Q 040319 638 M----EPQ---DPATYILVSNLYSSSGRWHNSELVREDMR 670 (812)
Q Consensus 638 ~----~p~---~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 670 (812)
+ .|+ -..+|..|+-+|.+.|++++|.++-+...
T Consensus 438 i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 438 IMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 3 344 45568889999999999999999987763
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.06 E-value=1e-06 Score=85.82 Aligned_cols=215 Identities=14% Similarity=0.135 Sum_probs=123.3
Q ss_pred HHHHHHHcCChhhHHHHHHHhcccCCCCCChhhHHHHHHHh-----cCccchHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 040319 408 MICGYARSGKPEHAILLFHQSQSEATVVPDEIALTSVLGVC-----GTLGFHEMGKQIHSYALKTGFSSDLGVANSMVSM 482 (812)
Q Consensus 408 li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~a~-----~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~ 482 (812)
++--|.+.++..+|..+.++..- ..|-+.....+..+- .....+..|++.+..+-.++.+-|+.
T Consensus 291 L~iYyL~q~dVqeA~~L~Kdl~P---ttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTI-------- 359 (557)
T KOG3785|consen 291 LIIYYLNQNDVQEAISLCKDLDP---TTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTI-------- 359 (557)
T ss_pred heeeecccccHHHHHHHHhhcCC---CChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccc--------
Confidence 33446778888888887766543 445444444433221 11223444555554444444333322
Q ss_pred hhhcCCHHHHHHHHccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCchHHHHHH
Q 040319 483 YFKCCNMSNAIKAFNKMPSHDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDAITFVLIISAYRYTNLNLVDSCRK 562 (812)
Q Consensus 483 y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~g~~~~a~~ 562 (812)
..-.+|.+.+.-..++++.+-.+.....-=..-|...| .+..|... .|.+.+|.+
T Consensus 360 ----------------------pGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~a--tgny~eaEe 414 (557)
T KOG3785|consen 360 ----------------------PGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLA--TGNYVEAEE 414 (557)
T ss_pred ----------------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHH--hcChHHHHH
Confidence 22333444444455555665555555542122222222 34445555 678888888
Q ss_pred HHHHhhhhcCccCCcchH-HHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHHHccCC
Q 040319 563 LFLSMKTIYNIEPTSEHY-ASLVSVLGYWGFLEEAEETINNMPFQPKVSVWRALLD-SCRIRLNTTIGKRVAKHILAMEP 640 (812)
Q Consensus 563 ~~~~m~~~~~~~p~~~~y-~~li~~l~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~-~~~~~~~~~~a~~~~~~~~~~~p 640 (812)
+|-.+.. ..++ +..+| +.|..+|.++|..+-|++++-++..+.+..+...++. -|.+.+.+=-|-+++..+-.++|
T Consensus 415 lf~~is~-~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP 492 (557)
T KOG3785|consen 415 LFIRISG-PEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDP 492 (557)
T ss_pred HHhhhcC-hhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCC
Confidence 8766653 2222 23344 4456788889999999999888875556666656655 49999999999999999888998
Q ss_pred CCCchHHHHHhhhhhCCCcchHHHHHHHHH
Q 040319 641 QDPATYILVSNLYSSSGRWHNSELVREDMR 670 (812)
Q Consensus 641 ~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 670 (812)
. |..| .|+-....-++..+-
T Consensus 493 ~-pEnW---------eGKRGACaG~f~~l~ 512 (557)
T KOG3785|consen 493 T-PENW---------EGKRGACAGLFRQLA 512 (557)
T ss_pred C-cccc---------CCccchHHHHHHHHH
Confidence 6 4433 234344455555553
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.04 E-value=6.1e-05 Score=83.30 Aligned_cols=605 Identities=12% Similarity=0.104 Sum_probs=319.8
Q ss_pred HHHHHHccCChhhHHHHHhcCCC---CChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCh
Q 040319 39 LISAYLKLGHVADAYKIFYGLSS---PNVVSFTSLISGLAKLGREEEAIELFFRMRSEGIVPNEHSFVAILTACIRLLEL 115 (812)
Q Consensus 39 li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~ 115 (812)
-.+.+..+|++++|-++--..|+ ++..|-+.+=+.=...|.+.--+.+|..+...| +.|..--.-+.+.-...|+.
T Consensus 366 rFneLfaqG~Y~eAAkvAAsSPrgILRt~~Ti~kFq~V~a~~Gq~sPLLqYFg~LLdqG-kLNk~ETLEL~RpVL~Q~Rk 444 (1666)
T KOG0985|consen 366 RFNELFAQGEYEEAAKVAASSPRGILRTPGTINKFQSVPAQPGQPSPLLQYFGTLLDQG-KLNKYETLELCRPVLQQGRK 444 (1666)
T ss_pred HHHHHHhCccHHHHHHHHHhCchhhhcCHHHHHHHHcCCCCCCCCCcHHHHHHHHHhcc-cccHHHHHHHHHHHHhhhHH
Confidence 33445568999999998888876 666676766666667788888888898888887 55554444455555555555
Q ss_pred HHHHHHHHHH-----HHhCCCCchHHHHHHHHHhhhcCCCHHHHHHHHhcCCC-----------CCcchHHHHHHHHHcC
Q 040319 116 ELGFQIHALI-----VKMGCVDSVFVTNALMGLYGKFSFCLDYLLKLFDELPH-----------KDTVSWNTVISSVVNE 179 (812)
Q Consensus 116 ~~a~~~~~~~-----~~~g~~~~~~~~~~li~~y~~~g~~~~~a~~~f~~~~~-----------~~~~~~~~li~~~~~~ 179 (812)
+.....+.+= .+.|--.-++--+.-++.|-|.+ .+..+...|.+... --+.-|-.+|+...+
T Consensus 445 qLlekWl~EdKLeCSEELGDlVK~~d~~lAL~iYlrAn-vp~KVi~cfAE~Gqf~KiilY~kKvGyTPdymflLq~l~r- 522 (1666)
T KOG0985|consen 445 QLLEKWLKEDKLECSEELGDLVKPYDTTLALSIYLRAN-VPAKVIQCFAETGQFKKIILYAKKVGYTPDYMFLLQQLKR- 522 (1666)
T ss_pred HHHHHHhhhhhhhhhHHhcCccccCCchHHHHHHHHcC-CcHHHHHHHHHhcchhHHHHHHHHcCCCccHHHHHHHHHc-
Confidence 4433332211 12231111111111223333333 33333332222211 011123334444444
Q ss_pred CChhHHHHHHHHhHhcCCCCCCcchHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHH
Q 040319 180 FEYEKAFELFRDMKRDNGFTVDYFTISTLLTACTGCFVLMEGRAVHAHAIRIGLGANLSVNNALIGFYTKCGRVKDVVAL 259 (812)
Q Consensus 180 g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l 259 (812)
-+++.+.++...|.+..+ ...-+..+...+........+...+-.+++..-+....+.+.|+.+=... -++-|..+
T Consensus 523 ~sPD~~~qFa~~l~Q~~~---~~~die~I~DlFme~N~iQq~TSFLLdaLK~~~Pd~g~LQTrLLE~NL~~-aPqVADAI 598 (1666)
T KOG0985|consen 523 SSPDQALQFAMMLVQDEE---PLADIEQIVDLFMELNLIQQCTSFLLDALKLNSPDEGHLQTRLLEMNLVH-APQVADAI 598 (1666)
T ss_pred cChhHHHHHHHHhhccCC---CcccHHHHHHHHHHHHhhhhhHHHHHHHhcCCChhhhhHHHHHHHHHhcc-chHHHHHH
Confidence 455555555555522222 22223333344444444444444444444433222233333343332221 12222221
Q ss_pred Hh-cCCCCcchhHHHHHHHHHhhCChhHHHHHhccCCC-CCcccHHHH-----HHHHHhCCChHHHHHHHHHHHHcCCCC
Q 040319 260 LE-RMPVMDIITLTEIIIAYMEFGYVDLAVEIFDKMPE-KNSVSYNAL-----LAGYCKNGKAMEALGLFVKLLEEGLVL 332 (812)
Q Consensus 260 ~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~-~d~~~~~~l-----i~~~~~~g~~~~A~~l~~~m~~~g~~p 332 (812)
+- .|- ...-|..+.+.|-++|-...|++.+..+.+ ..++..+.+ +-.|...-.++++++.++.|+..+++-
T Consensus 599 LgN~mF--tHyDra~IAqLCEKAGL~qraLehytDl~DIKR~vVhth~L~pEwLv~yFg~lsve~s~eclkaml~~Nirq 676 (1666)
T KOG0985|consen 599 LGNDMF--THYDRAEIAQLCEKAGLLQRALEHYTDLYDIKRVVVHTHLLNPEWLVNYFGSLSVEDSLECLKAMLSANIRQ 676 (1666)
T ss_pred Hhcccc--ccccHHHHHHHHHhcchHHHHHHhcccHHHHHHHHHHhccCCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHh
Confidence 11 110 011266778888899999999999988865 222222222 235666667899999999999999988
Q ss_pred CHhHHHHHHHHhccchhhhhHHHHHhhHHH-----------hcCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC----
Q 040319 333 TEFTLTSVVNACGLIMEAKLSEQIHGFVMK-----------FGLGSNDCIEAALLDMLTRCGRMADAEKMFYRWPT---- 397 (812)
Q Consensus 333 ~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~-----------~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~---- 397 (812)
|..+...+.+-|...-..+...++|+.... .++.-|+.+.-.-|.+-++.|++.+.+++.++-.-
T Consensus 677 NlQi~VQvatky~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpE 756 (1666)
T KOG0985|consen 677 NLQIVVQVATKYHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPE 756 (1666)
T ss_pred hhHHHHHHHHHHHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHH
Confidence 888777776666555445555555554333 24566777778889999999999999888754210
Q ss_pred -------------CCCcee-----eeH-------------HHHHHHHHcCChhhHHHHHHHhcccCCCCCChh-------
Q 040319 398 -------------DRDDSI-----IWT-------------SMICGYARSGKPEHAILLFHQSQSEATVVPDEI------- 439 (812)
Q Consensus 398 -------------~~~~~~-----~~~-------------~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~------- 439 (812)
..|-+. -+. -.|..|++.=++...-.+...... +.-++.
T Consensus 757 rvKNfLkeAkL~DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD---~dC~E~~ik~Li~ 833 (1666)
T KOG0985|consen 757 RVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTPQVVGALLD---VDCSEDFIKNLIL 833 (1666)
T ss_pred HHHHHHHhccccccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCcccchhhhhhhc---CCCcHHHHHHHHH
Confidence 012011 111 123444443333332222222221 111111
Q ss_pred ------hHHHHHHHhcCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHhhhcCCHHHH---------------------
Q 040319 440 ------ALTSVLGVCGTLGFHEMGKQIHSYALKTGFSSDLGVANSMVSMYFKCCNMSNA--------------------- 492 (812)
Q Consensus 440 ------t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A--------------------- 492 (812)
....+..-+.+.+++..-...++..+..|.. |+.++|+|...|..+++-.+-
T Consensus 834 ~v~gq~~~deLv~EvEkRNRLklLlp~LE~~i~eG~~-d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRD 912 (1666)
T KOG0985|consen 834 SVRGQFPVDELVEEVEKRNRLKLLLPWLESLIQEGSQ-DPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRD 912 (1666)
T ss_pred HHhccCChHHHHHHHHhhhhHHHHHHHHHHHHhccCc-chHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccC
Confidence 1122333344445555555566666666643 777888887766543321111
Q ss_pred -------------------------------HHHHccC----------------------------CC-CChhHHHHHHH
Q 040319 493 -------------------------------IKAFNKM----------------------------PS-HDIVSWNGLIA 512 (812)
Q Consensus 493 -------------------------------~~~f~~~----------------------------~~-~~~~~~~~li~ 512 (812)
+-+.++. ++ .|+.--+.-+.
T Consensus 913 P~lA~vaYerGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVk 992 (1666)
T KOG0985|consen 913 PHLACVAYERGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVK 992 (1666)
T ss_pred CceEEEeecccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHH
Confidence 1111100 00 22222334455
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHH--HHHHhcC------------------------CCCchHHHHHHHHH
Q 040319 513 GHLLHRQGDEALAVWSSMEKASIKP-DAITFVL--IISAYRY------------------------TNLNLVDSCRKLFL 565 (812)
Q Consensus 513 ~~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~--ll~a~~~------------------------~~~g~~~~a~~~~~ 565 (812)
++...+-+.+-++++++..-..-.- .....-. +++|... ...+.+++|..+|+
T Consensus 993 AfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai~~~LyEEAF~ifk 1072 (1666)
T KOG0985|consen 993 AFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAIENQLYEEAFAIFK 1072 (1666)
T ss_pred HHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHhhhhHHHHHHHHHH
Confidence 6666667777777777765321100 0011111 1111100 01445556666654
Q ss_pred HhhhhcCccCCcchHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCch
Q 040319 566 SMKTIYNIEPTSEHYASLVSVLGYWGFLEEAEETINNMPFQPKVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPAT 645 (812)
Q Consensus 566 ~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 645 (812)
... .+......|| -.-+.++.|.++-++.. .+.+|..+..|-...|.+..|..-+-+ .+||+.
T Consensus 1073 kf~------~n~~A~~VLi---e~i~~ldRA~efAe~~n---~p~vWsqlakAQL~~~~v~dAieSyik-----adDps~ 1135 (1666)
T KOG0985|consen 1073 KFD------MNVSAIQVLI---ENIGSLDRAYEFAERCN---EPAVWSQLAKAQLQGGLVKDAIESYIK-----ADDPSN 1135 (1666)
T ss_pred Hhc------ccHHHHHHHH---HHhhhHHHHHHHHHhhC---ChHHHHHHHHHHHhcCchHHHHHHHHh-----cCCcHH
Confidence 332 1222222222 34566777777776653 356899999999999999988876643 567899
Q ss_pred HHHHHhhhhhCCCcchHHHHHHHHHhCC
Q 040319 646 YILVSNLYSSSGRWHNSELVREDMREKG 673 (812)
Q Consensus 646 ~~~l~~~y~~~g~~~~a~~~~~~m~~~g 673 (812)
|...+++-.+.|+|++-.++..+.+++.
T Consensus 1136 y~eVi~~a~~~~~~edLv~yL~MaRkk~ 1163 (1666)
T KOG0985|consen 1136 YLEVIDVASRTGKYEDLVKYLLMARKKV 1163 (1666)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHhh
Confidence 9999999999999999999888776553
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.04 E-value=3.6e-07 Score=91.09 Aligned_cols=296 Identities=15% Similarity=0.053 Sum_probs=188.1
Q ss_pred CCChhHHHHHHHHhHhcCCCCCCcchHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHH
Q 040319 179 EFEYEKAFELFRDMKRDNGFTVDYFTISTLLTACTGCFVLMEGRAVHAHAIRIGLGANLSVNNALIGFYTKCGRVKDVVA 258 (812)
Q Consensus 179 ~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 258 (812)
.|++..|.++..+- .+.+-.| ...|.....+.-..|+.+.+-.++.++.+..-.++..+.-+........|+.+.|..
T Consensus 97 eG~~~qAEkl~~rn-ae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 97 EGDFQQAEKLLRRN-AEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred cCcHHHHHHHHHHh-hhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 57777777777665 4443333 234455555566667777777777666665435555555555566666666666665
Q ss_pred HHhcCCCCcchhHHHHHHHHHhhCChhHHHHHhccCCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHH
Q 040319 259 LLERMPVMDIITLTEIIIAYMEFGYVDLAVEIFDKMPEKNSVSYNALLAGYCKNGKAMEALGLFVKLLEEGLVLTEFTLT 338 (812)
Q Consensus 259 l~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~ 338 (812)
-++ -+.+|..+++........+|.+.|++.....++.+|.+.|+-.|+..-.
T Consensus 175 ~v~----------------------------~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~ 226 (400)
T COG3071 175 NVD----------------------------QLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAAR 226 (400)
T ss_pred HHH----------------------------HHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHH
Confidence 222 1223444677778888899999999999999999999988655543211
Q ss_pred HHHHHhccchhhhhHHHHHhhHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCC-CCceeeeHHHHHHHHHcCC
Q 040319 339 SVVNACGLIMEAKLSEQIHGFVMKFGLGSNDCIEAALLDMLTRCGRMADAEKMFYRWPTD-RDDSIIWTSMICGYARSGK 417 (812)
Q Consensus 339 ~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~-~~~~~~~~~li~~~~~~g~ 417 (812)
. ...+++.+++-....+..+.-...++..+.. ++++..-.+++.-+.+.|+
T Consensus 227 l----------------------------e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~ 278 (400)
T COG3071 227 L----------------------------EQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGD 278 (400)
T ss_pred H----------------------------HHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCC
Confidence 0 1112222333222223333333455555422 3445566677777888888
Q ss_pred hhhHHHHHHHhcccCCCCCChhhHHHHHHHhcCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHhhhcCCHHHHHHHHc
Q 040319 418 PEHAILLFHQSQSEATVVPDEIALTSVLGVCGTLGFHEMGKQIHSYALKTGFSSDLGVANSMVSMYFKCCNMSNAIKAFN 497 (812)
Q Consensus 418 ~~~A~~~~~~m~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~ 497 (812)
.++|.++..+..+ .+..|+.. .+-.+.+.++.+.-.+..+...+. .+.++..+.+|...|.|.+.+.+|...|+
T Consensus 279 ~~~A~~~i~~~Lk-~~~D~~L~----~~~~~l~~~d~~~l~k~~e~~l~~-h~~~p~L~~tLG~L~~k~~~w~kA~~~le 352 (400)
T COG3071 279 HDEAQEIIEDALK-RQWDPRLC----RLIPRLRPGDPEPLIKAAEKWLKQ-HPEDPLLLSTLGRLALKNKLWGKASEALE 352 (400)
T ss_pred hHHHHHHHHHHHH-hccChhHH----HHHhhcCCCCchHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhHHHHHHHHHH
Confidence 8888888888777 66666522 223445556555555555544442 23345778888899999999999999998
Q ss_pred cCCC--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 040319 498 KMPS--HDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPD 538 (812)
Q Consensus 498 ~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd 538 (812)
...+ |+..+|+-+..+|.+.|+.++|.+.+++.+..-..|+
T Consensus 353 aAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~~ 395 (400)
T COG3071 353 AALKLRPSASDYAELADALDQLGEPEEAEQVRREALLLTRQPN 395 (400)
T ss_pred HHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCC
Confidence 6654 8888999999999999999999888888775444443
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=2e-08 Score=112.97 Aligned_cols=243 Identities=12% Similarity=0.004 Sum_probs=174.6
Q ss_pred ChhhHHHHHHHhcccCCCCCChhh-HHHHHHHh---------cCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHhhhc
Q 040319 417 KPEHAILLFHQSQSEATVVPDEIA-LTSVLGVC---------GTLGFHEMGKQIHSYALKTGFSSDLGVANSMVSMYFKC 486 (812)
Q Consensus 417 ~~~~A~~~~~~m~~~~g~~p~~~t-~~~ll~a~---------~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~ 486 (812)
..++|+..|++..+ ..|+... +..+..++ ...++.+.|...+..+++.. +.+...+..+..++...
T Consensus 276 ~~~~A~~~~~~Al~---ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~ 351 (553)
T PRK12370 276 SLQQALKLLTQCVN---MSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIH 351 (553)
T ss_pred HHHHHHHHHHHHHh---cCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHc
Confidence 34677777777766 5565443 22222211 12345788888888888754 34677788888899999
Q ss_pred CCHHHHHHHHccCCC--C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH-HHHHHHHhcCCCCchHHHHHH
Q 040319 487 CNMSNAIKAFNKMPS--H-DIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDAIT-FVLIISAYRYTNLNLVDSCRK 562 (812)
Q Consensus 487 g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t-~~~ll~a~~~~~~g~~~~a~~ 562 (812)
|++++|...|++..+ | +...|..+...|...|++++|+..+++.++ +.|+... +..++..+.. .|++++|..
T Consensus 352 g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~--l~P~~~~~~~~~~~~~~~--~g~~eeA~~ 427 (553)
T PRK12370 352 SEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLK--LDPTRAAAGITKLWITYY--HTGIDDAIR 427 (553)
T ss_pred cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCChhhHHHHHHHHHh--ccCHHHHHH
Confidence 999999999998765 4 456788899999999999999999999999 6787532 2333444555 788999999
Q ss_pred HHHHhhhhcCccCC-cchHHHHHHHHhhcCChHHHHHHHHhCC-CCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHccC
Q 040319 563 LFLSMKTIYNIEPT-SEHYASLVSVLGYWGFLEEAEETINNMP-FQPKVS-VWRALLDSCRIRLNTTIGKRVAKHILAME 639 (812)
Q Consensus 563 ~~~~m~~~~~~~p~-~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 639 (812)
.+++..+. ..|+ +..+..+..+|...|+.++|.+.++++. ..|+.. .++.+...+...| +.|...++++++..
T Consensus 428 ~~~~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~ 503 (553)
T PRK12370 428 LGDELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESE 503 (553)
T ss_pred HHHHHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHh
Confidence 99988652 1343 5567888999999999999999998864 556544 4444545566666 47888788877654
Q ss_pred CCCCchHHHHHhhhhhCCCcchHHHHHHHHHhC
Q 040319 640 PQDPATYILVSNLYSSSGRWHNSELVREDMREK 672 (812)
Q Consensus 640 p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 672 (812)
-..+.....+..+|+-.|+-+.+..+ +++.+.
T Consensus 504 ~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 504 QRIDNNPGLLPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred hHhhcCchHHHHHHHHHhhhHHHHHH-HHhhcc
Confidence 33333344488889999999999888 666543
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.7e-08 Score=103.69 Aligned_cols=210 Identities=11% Similarity=0.025 Sum_probs=149.5
Q ss_pred chHHHHHHHHHHHHhC-CCC--chhHHHHHHHHhhhcCCHHHHHHHHccCCC---CChhHHHHHHHHHHhcCChHHHHHH
Q 040319 453 FHEMGKQIHSYALKTG-FSS--DLGVANSMVSMYFKCCNMSNAIKAFNKMPS---HDIVSWNGLIAGHLLHRQGDEALAV 526 (812)
Q Consensus 453 ~~~~a~~~~~~~~~~g-~~~--~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l 526 (812)
..+.+..-+..++... ..| ....+..+...|.+.|+.++|...|++..+ .+...|+.+...|...|++++|++.
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~ 120 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEA 120 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4455555555555422 222 245677788889999999999999987765 4578999999999999999999999
Q ss_pred HHHHHHCCCCCCH-HHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCCcchHHHHHHHHhhcCChHHHHHHHHhCC-
Q 040319 527 WSSMEKASIKPDA-ITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLEEAEETINNMP- 604 (812)
Q Consensus 527 ~~~m~~~g~~pd~-~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~- 604 (812)
|++.++ +.|+. .++..+..++.. .|++++|.+.|+...+ ..|+..........+...++.++|.+.+++..
T Consensus 121 ~~~Al~--l~P~~~~a~~~lg~~l~~--~g~~~eA~~~~~~al~---~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~ 193 (296)
T PRK11189 121 FDSVLE--LDPTYNYAYLNRGIALYY--GGRYELAQDDLLAFYQ---DDPNDPYRALWLYLAESKLDPKQAKENLKQRYE 193 (296)
T ss_pred HHHHHH--hCCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 999998 78876 666777777777 8999999999999876 35654322333334556788999999996633
Q ss_pred -CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-------ccCCCCCchHHHHHhhhhhCCCcchHHHHHHHHHhCC
Q 040319 605 -FQPKVSVWRALLDSCRIRLNTTIGKRVAKHIL-------AMEPQDPATYILVSNLYSSSGRWHNSELVREDMREKG 673 (812)
Q Consensus 605 -~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~-------~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g 673 (812)
..|+...| .+ .....|+...+ ..++.+. ++.|+.+.+|..++.+|.+.|++++|...+++..+..
T Consensus 194 ~~~~~~~~~-~~--~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 194 KLDKEQWGW-NI--VEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred hCCccccHH-HH--HHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 23333222 12 22234444333 2333333 5567777899999999999999999999999886543
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.01 E-value=2.2e-05 Score=82.82 Aligned_cols=525 Identities=13% Similarity=0.068 Sum_probs=264.7
Q ss_pred ccchHHHHHHHHccCChhhHHHHHhcCCC-----CChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHH
Q 040319 33 TRFGNPLISAYLKLGHVADAYKIFYGLSS-----PNVVSFTSLISGLAKLGREEEAIELFFRMRSEGIVPNEHSFVAILT 107 (812)
Q Consensus 33 ~~~~~~li~~~~~~g~~~~A~~~f~~~~~-----~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 107 (812)
+.+|-..+....++|++...+..|++... .....|...+....+.+-++-++++|++.++. ++..-.--|.
T Consensus 102 pRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie 177 (835)
T KOG2047|consen 102 PRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIE 177 (835)
T ss_pred CHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHH
Confidence 45666666666677777777777765321 22235666666666667777777777776642 3333455566
Q ss_pred HHHhcCChHHHHHHHHHHHHhC------CCCchHHHHHHHHHhhhcCC--CHHHHHHHHhcCCCC----CcchHHHHHHH
Q 040319 108 ACIRLLELELGFQIHALIVKMG------CVDSVFVTNALMGLYGKFSF--CLDYLLKLFDELPHK----DTVSWNTVISS 175 (812)
Q Consensus 108 ~~~~~~~~~~a~~~~~~~~~~g------~~~~~~~~~~li~~y~~~g~--~~~~a~~~f~~~~~~----~~~~~~~li~~ 175 (812)
.++..+++++|.+.+..++... .+.+...|.-+-+..++... .--....++..+..+ -...|++|...
T Consensus 178 ~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdY 257 (835)
T KOG2047|consen 178 YLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADY 257 (835)
T ss_pred HHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHH
Confidence 6666777777766666654321 13344555555555444320 111233444444432 23467777777
Q ss_pred HHcCCChhHHHHHHHHhHhcCCCCCCcchHHHHHHHHhcCC----------------------ChHHHHHHHHHHHHhCC
Q 040319 176 VVNEFEYEKAFELFRDMKRDNGFTVDYFTISTLLTACTGCF----------------------VLMEGRAVHAHAIRIGL 233 (812)
Q Consensus 176 ~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~~----------------------~~~~a~~~~~~~~~~g~ 233 (812)
|.+.|.++.|.++|++-.+. ..+..-|..+.++|+... +++....-++.++..+.
T Consensus 258 YIr~g~~ekarDvyeeai~~---v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~ 334 (835)
T KOG2047|consen 258 YIRSGLFEKARDVYEEAIQT---VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRP 334 (835)
T ss_pred HHHhhhhHHHHHHHHHHHHh---heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccc
Confidence 77777777777777665221 122223444444433211 11222222222222110
Q ss_pred -----------CCchhHHHHHHHHHHhcCChHHHHHHHhcCC-------CCc--chhHHHHHHHHHhhCChhHHHHHhcc
Q 040319 234 -----------GANLSVNNALIGFYTKCGRVKDVVALLERMP-------VMD--IITLTEIIIAYMEFGYVDLAVEIFDK 293 (812)
Q Consensus 234 -----------~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~-------~~~--~~~~~~li~~~~~~g~~~~A~~~f~~ 293 (812)
+.++..|..-+..| .|+..+-...+.+.. .++ ...|..+.+.|-.+|+++.|..+|++
T Consensus 335 ~~lNsVlLRQn~~nV~eW~kRV~l~--e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifek 412 (835)
T KOG2047|consen 335 LLLNSVLLRQNPHNVEEWHKRVKLY--EGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEK 412 (835)
T ss_pred hHHHHHHHhcCCccHHHHHhhhhhh--cCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 11222222222211 233444444443331 111 14577778888888888888888888
Q ss_pred CCCCCccc-------HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHhccchhhhhHHHHHhhHHHhcCC
Q 040319 294 MPEKNSVS-------YNALLAGYCKNGKAMEALGLFVKLLEEGLVLTEFTLTSVVNACGLIMEAKLSEQIHGFVMKFGLG 366 (812)
Q Consensus 294 m~~~d~~~-------~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~ 366 (812)
..+-+-.+ |-.-...=.+..+++.|+.+.+.... .|.... +..+-. +..-++ .+-
T Consensus 413 a~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~---vP~~~~----~~~yd~-~~pvQ~----------rlh 474 (835)
T KOG2047|consen 413 ATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATH---VPTNPE----LEYYDN-SEPVQA----------RLH 474 (835)
T ss_pred hhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhc---CCCchh----hhhhcC-CCcHHH----------HHH
Confidence 76633333 33333334455666677666555443 333221 111111 111000 011
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCCceeeeHHHHH---HHHHcCChhhHHHHHHHhcccCCCCCChh-hHH
Q 040319 367 SNDCIEAALLDMLTRCGRMADAEKMFYRWPTDRDDSIIWTSMIC---GYARSGKPEHAILLFHQSQSEATVVPDEI-ALT 442 (812)
Q Consensus 367 ~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~---~~~~~g~~~~A~~~~~~m~~~~g~~p~~~-t~~ 442 (812)
.+..++...++.--.+|-++....+++++. +-. +.|-..+++ -+-.+.-++++.++|++-.. --.-|+.. .|+
T Consensus 475 rSlkiWs~y~DleEs~gtfestk~vYdrii-dLr-iaTPqii~NyAmfLEeh~yfeesFk~YErgI~-LFk~p~v~diW~ 551 (835)
T KOG2047|consen 475 RSLKIWSMYADLEESLGTFESTKAVYDRII-DLR-IATPQIIINYAMFLEEHKYFEESFKAYERGIS-LFKWPNVYDIWN 551 (835)
T ss_pred HhHHHHHHHHHHHHHhccHHHHHHHHHHHH-HHh-cCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCc-cCCCccHHHHHH
Confidence 234456666666677788888888888876 311 222111221 12345567888888876554 32345543 455
Q ss_pred HHHHHhc-Cc--cchHHHHHHHHHHHHhCCCCchhHHHHHHHHhh----hcCCHHHHHHHHccCCC-----CChhHHHHH
Q 040319 443 SVLGVCG-TL--GFHEMGKQIHSYALKTGFSSDLGVANSMVSMYF----KCCNMSNAIKAFNKMPS-----HDIVSWNGL 510 (812)
Q Consensus 443 ~ll~a~~-~~--~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~----k~g~~~~A~~~f~~~~~-----~~~~~~~~l 510 (812)
+.|.-+. +. ..++.++.+|+++++ |.+|.. ...+--.|+ +-|....|..++++... .-...||..
T Consensus 552 tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~--aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~ 628 (835)
T KOG2047|consen 552 TYLTKFIKRYGGTKLERARDLFEQALD-GCPPEH--AKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIY 628 (835)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHH--HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 5554332 22 367888888888888 555432 222222343 34667777777776543 123467776
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH-HhcCCCCchHHHHHHHHHHhhhhcCccCCcchHHHHHHHHhh
Q 040319 511 IAGHLLHRQGDEALAVWSSMEKASIKPDAITFVLIIS-AYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGY 589 (812)
Q Consensus 511 i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~-a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~ 589 (812)
|.--+..=-......+|++.++ .-||...-...|. |=...+.|.++.|..++..-.+-..-..+.+.|.+.-+.=.+
T Consensus 629 I~kaae~yGv~~TR~iYekaIe--~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvr 706 (835)
T KOG2047|consen 629 IKKAAEIYGVPRTREIYEKAIE--SLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVR 706 (835)
T ss_pred HHHHHHHhCCcccHHHHHHHHH--hCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHh
Confidence 6544433334445566677666 4666543332222 111112566666666665443311111124445555444455
Q ss_pred cCC
Q 040319 590 WGF 592 (812)
Q Consensus 590 ~g~ 592 (812)
.|+
T Consensus 707 HGn 709 (835)
T KOG2047|consen 707 HGN 709 (835)
T ss_pred cCC
Confidence 555
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.01 E-value=2.6e-07 Score=92.05 Aligned_cols=286 Identities=12% Similarity=0.043 Sum_probs=159.2
Q ss_pred CCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHhccchhhhhHHHHHhhHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 040319 312 NGKAMEALGLFVKLLEEGLVLTEFTLTSVVNACGLIMEAKLSEQIHGFVMKFGLGSNDCIEAALLDMLTRCGRMADAEKM 391 (812)
Q Consensus 312 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~ 391 (812)
.|++.+|+++..+-.+.+-.|- ..|..-..+....|+.+.+......+.+.--.++..+.-+........|+.+.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~-l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPV-LAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchH-HHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 4777777777777666654442 334444555666677777777777776665566666666777777778888888777
Q ss_pred HhcCCCC-CCceeeeHHHHHHHHHcCChhhHHHHHHHhcccCCCCCChhhHHHHHHHhcCccchHHHHHHHHHHHHhCCC
Q 040319 392 FYRWPTD-RDDSIIWTSMICGYARSGKPEHAILLFHQSQSEATVVPDEIALTSVLGVCGTLGFHEMGKQIHSYALKTGFS 470 (812)
Q Consensus 392 f~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~ 470 (812)
.+++... +.+..........|.+.|++.+.+.++.+|.+ .+.--|+.. .++
T Consensus 176 v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~k-a~~l~~~e~-----------------~~l---------- 227 (400)
T COG3071 176 VDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRK-AGLLSDEEA-----------------ARL---------- 227 (400)
T ss_pred HHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHH-ccCCChHHH-----------------HHH----------
Confidence 6665422 22256677777888888888888888888887 655443321 110
Q ss_pred CchhHHHHHHHHhhhcCCHHHHHHHHccCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 040319 471 SDLGVANSMVSMYFKCCNMSNAIKAFNKMPS---HDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDAITFVLIIS 547 (812)
Q Consensus 471 ~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~ 547 (812)
...+++.+++-....+..+.-...++..+. .++..-.+++.-+.+.|+.++|.++.++..+.+..|+-.++.
T Consensus 228 -e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~---- 302 (400)
T COG3071 228 -EQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLI---- 302 (400)
T ss_pred -HHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHH----
Confidence 112233333333333334444444555443 345555566777778888888888888888877777632222
Q ss_pred HhcCCCCchHHHHHHHHHHhhhhcCccCCcchHHHHHHHHhhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHH
Q 040319 548 AYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLEEAEETINNM-PFQPKVSVWRALLDSCRIRLNTT 626 (812)
Q Consensus 548 a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~~~~~ 626 (812)
.+.. .++...-++..+...+.++-.| ..+.+|..+|.+.+.+.+|.+.++.. +..|+...|.-+..++-..|+.+
T Consensus 303 ~~l~--~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~ 378 (400)
T COG3071 303 PRLR--PGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPE 378 (400)
T ss_pred hhcC--CCCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChH
Confidence 2334 4555554444444443332222 33444444444444444444444432 13344444444444444444444
Q ss_pred HHHHHHHHH
Q 040319 627 IGKRVAKHI 635 (812)
Q Consensus 627 ~a~~~~~~~ 635 (812)
.|.+..+..
T Consensus 379 ~A~~~r~e~ 387 (400)
T COG3071 379 EAEQVRREA 387 (400)
T ss_pred HHHHHHHHH
Confidence 444443333
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.3e-08 Score=92.04 Aligned_cols=162 Identities=16% Similarity=0.148 Sum_probs=137.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCC-cchHHHH
Q 040319 506 SWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDA-ITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPT-SEHYASL 583 (812)
Q Consensus 506 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~l 583 (812)
....|..+|.+.|+...|.+-+++.++ ..|+. .++..+...|.. .|..+.|.+.|+...+ +.|+ -++.|..
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~--~DPs~~~a~~~~A~~Yq~--~Ge~~~A~e~YrkAls---l~p~~GdVLNNY 109 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALE--HDPSYYLAHLVRAHYYQK--LGENDLADESYRKALS---LAPNNGDVLNNY 109 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHH--cCChhhHHHHHHHHHh---cCCCccchhhhh
Confidence 344577788899999999999999988 77876 667777777888 8999999999988875 5565 6788889
Q ss_pred HHHHhhcCChHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCCc
Q 040319 584 VSVLGYWGFLEEAEETINNMPFQPK----VSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRW 659 (812)
Q Consensus 584 i~~l~~~g~~~~A~~~~~~m~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~ 659 (812)
.-.||..|++++|...|++....|+ ..+|..+.....+.|+.+.|+..+++.++++|+.+.....+++...+.|++
T Consensus 110 G~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y 189 (250)
T COG3063 110 GAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDY 189 (250)
T ss_pred hHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccc
Confidence 9999999999999999988653443 457778777777899999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHhCCC
Q 040319 660 HNSELVREDMREKGF 674 (812)
Q Consensus 660 ~~a~~~~~~m~~~g~ 674 (812)
-.|...++....++.
T Consensus 190 ~~Ar~~~~~~~~~~~ 204 (250)
T COG3063 190 APARLYLERYQQRGG 204 (250)
T ss_pred hHHHHHHHHHHhccc
Confidence 999999998876655
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.8e-06 Score=91.60 Aligned_cols=499 Identities=12% Similarity=0.057 Sum_probs=249.4
Q ss_pred hcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHH---hcCChHHH-------------------HHH----HHHHHHhC
Q 040319 76 KLGREEEAIELFFRMRSEGIVPNEHSFVAILTACI---RLLELELG-------------------FQI----HALIVKMG 129 (812)
Q Consensus 76 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~---~~~~~~~a-------------------~~~----~~~~~~~g 129 (812)
..+++++++.-+..-...+...++.++..+..++. ..++.+.. ... +.++....
T Consensus 239 ~~~~~~~~i~s~~~~l~~~w~~~~l~ka~l~~~~~~f~~~~~~Ee~~Lllli~es~i~Re~~~d~ilslm~~~~k~r~~~ 318 (799)
T KOG4162|consen 239 KLSGPKEAIKSYRRALLRSWSLDPLTKARLYKGFALFLPKSGQEEVILLLLIEESLIPRENIEDAILSLMLLLRKLRLKK 318 (799)
T ss_pred CCCCchHHHHhhhHHhhcccccchhHHHHHhhcccccCCCCcHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHhh
Confidence 34666777777777777776666666666554433 22333333 111 12222223
Q ss_pred CCCchHHHHHHHHHhhhcCCCHHHHHHHHhcCCC---CCcchHHHHHHHHHcCCChhHHHHHHHHhHhcCCCCCCcchHH
Q 040319 130 CVDSVFVTNALMGLYGKFSFCLDYLLKLFDELPH---KDTVSWNTVISSVVNEFEYEKAFELFRDMKRDNGFTVDYFTIS 206 (812)
Q Consensus 130 ~~~~~~~~~~li~~y~~~g~~~~~a~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~ 206 (812)
+..|+.+|..|.-+..++| .+..+-+.|++... .....|+.+-..|...|.-..|..+.+.-.....-++|...+.
T Consensus 319 ~qnd~ai~d~Lt~al~~~g-~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCG-QFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred hcchHHHHHHHHHHHHHHH-HHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 5567777888888888888 88888888876553 3455788888888888887888888776522221122333333
Q ss_pred HHHHHHh-cCCChHHHHHHHHHHHHhC--C--CCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCcchhHHHHHHHHHhh
Q 040319 207 TLLTACT-GCFVLMEGRAVHAHAIRIG--L--GANLSVNNALIGFYTKCGRVKDVVALLERMPVMDIITLTEIIIAYMEF 281 (812)
Q Consensus 207 ~ll~~~~-~~~~~~~a~~~~~~~~~~g--~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~li~~~~~~ 281 (812)
..-+.|. +.+..+++..+-..++... . ......+-.+.-+|...-
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A------------------------------ 447 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQA------------------------------ 447 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHh------------------------------
Confidence 3333343 3344444444444433311 0 001111111111111100
Q ss_pred CChhHHHHHhccCCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHcC-CCCCHhHHHHHHHHhccchhhhhHHHHHhhH
Q 040319 282 GYVDLAVEIFDKMPEKNSVSYNALLAGYCKNGKAMEALGLFVKLLEEG-LVLTEFTLTSVVNACGLIMEAKLSEQIHGFV 360 (812)
Q Consensus 282 g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~ 360 (812)
....++. -+.....++++.+++.++.+ -.|+..-|.++- ++..++++.|.+...+.
T Consensus 448 ---------------~~a~~~s------eR~~~h~kslqale~av~~d~~dp~~if~lalq--~A~~R~l~sAl~~~~ea 504 (799)
T KOG4162|consen 448 ---------------RQANLKS------ERDALHKKSLQALEEAVQFDPTDPLVIFYLALQ--YAEQRQLTSALDYAREA 504 (799)
T ss_pred ---------------hcCCChH------HHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHH--HHHHHhHHHHHHHHHHH
Confidence 0000000 00112345566666665543 234433333332 33455666666666666
Q ss_pred HHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCC-ceeeeHHHHHHHHHcCChhhHHHHHHHhcccCCCCCChh
Q 040319 361 MKFGLGSNDCIEAALLDMLTRCGRMADAEKMFYRWPTDRD-DSIIWTSMICGYARSGKPEHAILLFHQSQSEATVVPDEI 439 (812)
Q Consensus 361 ~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~ 439 (812)
.+.+-..+...+--|.-.+...+++.+|+.+.+....+.+ |-+....-|..-..-++.++|+.....+.. +--+..
T Consensus 505 L~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~---~we~~~ 581 (799)
T KOG4162|consen 505 LALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLA---LWEAEY 581 (799)
T ss_pred HHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHH---HHHhhh
Confidence 6665566666666666666667777777766654331211 111111112222234556666555544432 000000
Q ss_pred hHHHHHHHhcCccchHHHHHHHHHHH--HhCCCCchhHHHH---HHHHhhhcCCHHHHHHHHccCCCCChhHHHHHHHHH
Q 040319 440 ALTSVLGVCGTLGFHEMGKQIHSYAL--KTGFSSDLGVANS---MVSMYFKCCNMSNAIKAFNKMPSHDIVSWNGLIAGH 514 (812)
Q Consensus 440 t~~~ll~a~~~~~~~~~a~~~~~~~~--~~g~~~~~~~~~~---Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~ 514 (812)
.+.. .++-....+....+. .......+.++.. ++..=.+.-..+..+..+...+.|+. +|..+
T Consensus 582 ~~q~-------~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~-~~~~~---- 649 (799)
T KOG4162|consen 582 GVQQ-------TLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDS-LWYLL---- 649 (799)
T ss_pred hHhh-------hhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCc-hHHHH----
Confidence 0000 000000000000000 0000001111211 11111111111111111222222221 12111
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCC-cchHHHHHHHHhhcCCh
Q 040319 515 LLHRQGDEALAVWSSMEKASIKPDAITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPT-SEHYASLVSVLGYWGFL 593 (812)
Q Consensus 515 ~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g~~ 593 (812)
...+......+.. .+..++|...+.+... +.|- ...|.-....+...|.+
T Consensus 650 ------------------------~~lwllaa~~~~~--~~~~~~a~~CL~Ea~~---~~~l~~~~~~~~G~~~~~~~~~ 700 (799)
T KOG4162|consen 650 ------------------------QKLWLLAADLFLL--SGNDDEARSCLLEASK---IDPLSASVYYLRGLLLEVKGQL 700 (799)
T ss_pred ------------------------HHHHHHHHHHHHh--cCCchHHHHHHHHHHh---cchhhHHHHHHhhHHHHHHHhh
Confidence 1112222233444 5555566555554443 2332 44555566777788888
Q ss_pred HHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcCCHHHHHH--HHHHHHccCCCCCchHHHHHhhhhhCCCcchHHHHHHHH
Q 040319 594 EEAEETINNMP-FQPK-VSVWRALLDSCRIRLNTTIGKR--VAKHILAMEPQDPATYILVSNLYSSSGRWHNSELVREDM 669 (812)
Q Consensus 594 ~~A~~~~~~m~-~~p~-~~~~~~ll~~~~~~~~~~~a~~--~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 669 (812)
+||.+.|.... +.|+ +.+..++...+...|+...|.. +...+++++|.++.+|..|+.++-+.|+.++|.+.+...
T Consensus 701 ~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa 780 (799)
T KOG4162|consen 701 EEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAA 780 (799)
T ss_pred HHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHH
Confidence 88888877654 6774 6678888888888888888888 889999999999999999999999999999999988877
Q ss_pred HhC
Q 040319 670 REK 672 (812)
Q Consensus 670 ~~~ 672 (812)
-+-
T Consensus 781 ~qL 783 (799)
T KOG4162|consen 781 LQL 783 (799)
T ss_pred Hhh
Confidence 543
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.8e-07 Score=88.93 Aligned_cols=271 Identities=14% Similarity=0.109 Sum_probs=145.9
Q ss_pred CCChhHHHHHHHHhHhcCCCCCCcchHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHH
Q 040319 179 EFEYEKAFELFRDMKRDNGFTVDYFTISTLLTACTGCFVLMEGRAVHAHAIRIGLGANLSVNNALIGFYTKCGRVKDVVA 258 (812)
Q Consensus 179 ~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 258 (812)
+.++++|.++|-+|.+. -+-+..+-.++-+.+.+.|..+.|..+|..+.++ ||...-..+
T Consensus 48 s~Q~dKAvdlF~e~l~~--d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~--------------- 107 (389)
T COG2956 48 SNQPDKAVDLFLEMLQE--DPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRL--------------- 107 (389)
T ss_pred hcCcchHHHHHHHHHhc--CchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHH---------------
Confidence 46889999999999321 1112223345666677888888888888887764 222111000
Q ss_pred HHhcCCCCcchhHHHHHHHHHhhCChhHHHHHhccCCCCCcc---cHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHh
Q 040319 259 LLERMPVMDIITLTEIIIAYMEFGYVDLAVEIFDKMPEKNSV---SYNALLAGYCKNGKAMEALGLFVKLLEEGLVLTEF 335 (812)
Q Consensus 259 l~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~d~~---~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 335 (812)
...-.|..-|...|-+|.|+.+|..+.+.+.. ....|+..|.+..++++|++.-+++...|-++..+
T Consensus 108 ----------lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~ 177 (389)
T COG2956 108 ----------LALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRV 177 (389)
T ss_pred ----------HHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchh
Confidence 01112333444555555555577777664333 45567888999999999999988888766544332
Q ss_pred HHHHHHHHhccchhhhhHHHHHhhHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCC-CCceeeeHHHHHHHHH
Q 040319 336 TLTSVVNACGLIMEAKLSEQIHGFVMKFGLGSNDCIEAALLDMLTRCGRMADAEKMFYRWPTD-RDDSIIWTSMICGYAR 414 (812)
Q Consensus 336 t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~-~~~~~~~~~li~~~~~ 414 (812)
-.. ..|.-|...+....+.+.|..++.+.... +..+..--.+-..+..
T Consensus 178 eIA-------------------------------qfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~ 226 (389)
T COG2956 178 EIA-------------------------------QFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELA 226 (389)
T ss_pred HHH-------------------------------HHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHh
Confidence 211 11222333344455666666666654422 2223333334455666
Q ss_pred cCChhhHHHHHHHhcccCCCCCChhhHHHHHHHhcCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHhhhcCCHHHHHH
Q 040319 415 SGKPEHAILLFHQSQSEATVVPDEIALTSVLGVCGTLGFHEMGKQIHSYALKTGFSSDLGVANSMVSMYFKCCNMSNAIK 494 (812)
Q Consensus 415 ~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~ 494 (812)
.|+++.|++.++...+ . .|+ --..+...|..+|...|+.++...
T Consensus 227 ~g~y~~AV~~~e~v~e-Q--n~~---------------------------------yl~evl~~L~~~Y~~lg~~~~~~~ 270 (389)
T COG2956 227 KGDYQKAVEALERVLE-Q--NPE---------------------------------YLSEVLEMLYECYAQLGKPAEGLN 270 (389)
T ss_pred ccchHHHHHHHHHHHH-h--ChH---------------------------------HHHHHHHHHHHHHHHhCCHHHHHH
Confidence 7777777777776665 2 222 222333445555555555555555
Q ss_pred HHccCCC--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 040319 495 AFNKMPS--HDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDAITFVLIISA 548 (812)
Q Consensus 495 ~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a 548 (812)
.+.++.+ +++..-+.+-..-....-.+.|.....+-+. -+|+...|..++..
T Consensus 271 fL~~~~~~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~--r~Pt~~gf~rl~~~ 324 (389)
T COG2956 271 FLRRAMETNTGADAELMLADLIELQEGIDAAQAYLTRQLR--RKPTMRGFHRLMDY 324 (389)
T ss_pred HHHHHHHccCCccHHHHHHHHHHHhhChHHHHHHHHHHHh--hCCcHHHHHHHHHh
Confidence 5544433 3333333333322333333444444444444 46666666666654
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.95 E-value=5.5e-07 Score=86.99 Aligned_cols=310 Identities=14% Similarity=0.109 Sum_probs=150.4
Q ss_pred hCCChHHHHHHHHHHHHcCCCCCHh-HHHHHHHHhccchhhhhHHHHHhhHHHhcC-CCc--hhHHHHHHHHHHhcCCHH
Q 040319 311 KNGKAMEALGLFVKLLEEGLVLTEF-TLTSVVNACGLIMEAKLSEQIHGFVMKFGL-GSN--DCIEAALLDMLTRCGRMA 386 (812)
Q Consensus 311 ~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~-~~~--~~~~~~Li~~y~~~g~~~ 386 (812)
-+.+.++|.++|-+|.+.. |..+ +-.++=+-+-+.|..+.|..+|..+.++.- ..+ ..+.-.|..-|...|-++
T Consensus 47 Ls~Q~dKAvdlF~e~l~~d--~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~D 124 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQED--PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLD 124 (389)
T ss_pred hhcCcchHHHHHHHHHhcC--chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhh
Confidence 3568899999999998732 2211 222333344455566666666655554311 111 122233444455555555
Q ss_pred HHHHHHhcCCCCCC--ceeeeHHHHHHHHHcCChhhHHHHHHHhcccCCCCCChhhHHHHHHHhcCccchHHHHHHHHHH
Q 040319 387 DAEKMFYRWPTDRD--DSIIWTSMICGYARSGKPEHAILLFHQSQSEATVVPDEIALTSVLGVCGTLGFHEMGKQIHSYA 464 (812)
Q Consensus 387 ~A~~~f~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~ 464 (812)
.|+.+|..+. +.+ -......++..|-+..++++|++.-++... .+-.+..+-
T Consensus 125 RAE~~f~~L~-de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k-~~~q~~~~e------------------------ 178 (389)
T COG2956 125 RAEDIFNQLV-DEGEFAEGALQQLLNIYQATREWEKAIDVAERLVK-LGGQTYRVE------------------------ 178 (389)
T ss_pred HHHHHHHHHh-cchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHH-cCCccchhH------------------------
Confidence 5555555544 222 011233344444444444444444444433 221111110
Q ss_pred HHhCCCCchhHHHHHHHHhhhcCCHHHHHHHHccCCCCC---hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH--
Q 040319 465 LKTGFSSDLGVANSMVSMYFKCCNMSNAIKAFNKMPSHD---IVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDA-- 539 (812)
Q Consensus 465 ~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-- 539 (812)
=...|.-|...+.-..+++.|..++.+..+.| +..=-.+...+...|+++.|++.++...+. .|+.
T Consensus 179 -------IAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ--n~~yl~ 249 (389)
T COG2956 179 -------IAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQ--NPEYLS 249 (389)
T ss_pred -------HHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHh--ChHHHH
Confidence 01223334444445556666666666554422 222223445566667777777777777663 3443
Q ss_pred HHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCCcchHHHHHHHHhhcCChHHHHHHHH-hCCCCCCHHHHHHHHHH
Q 040319 540 ITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLEEAEETIN-NMPFQPKVSVWRALLDS 618 (812)
Q Consensus 540 ~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~-~m~~~p~~~~~~~ll~~ 618 (812)
.+...|..+|.+ .|+.+++...+..+.+ ..+....-..|.+......-.++|...+. ...-+|+...+..|+..
T Consensus 250 evl~~L~~~Y~~--lg~~~~~~~fL~~~~~---~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~ 324 (389)
T COG2956 250 EVLEMLYECYAQ--LGKPAEGLNFLRRAME---TNTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDY 324 (389)
T ss_pred HHHHHHHHHHHH--hCCHHHHHHHHHHHHH---ccCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHh
Confidence 344555666666 6666666666666654 22333333333333333333333333322 23334544444333332
Q ss_pred HHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCCcchHHHHHHHHHhCCCCCCCceeEEEECCEEEEEe
Q 040319 619 CRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWHNSELVREDMREKGFRKHPSRSWIIHQNKVHSFY 693 (812)
Q Consensus 619 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~~~~f~ 693 (812)
-.. =+.-|++.+-.-+.+.|....++..|.+.=-..+-..|.|.
T Consensus 325 ~l~-------------------------------daeeg~~k~sL~~lr~mvge~l~~~~~YRC~~CGF~a~~l~ 368 (389)
T COG2956 325 HLA-------------------------------DAEEGRAKESLDLLRDMVGEQLRRKPRYRCQNCGFTAHTLY 368 (389)
T ss_pred hhc-------------------------------cccccchhhhHHHHHHHHHHHHhhcCCceecccCCcceeee
Confidence 110 12335677777888888777777777654444444455553
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=5.3e-08 Score=109.51 Aligned_cols=210 Identities=9% Similarity=0.007 Sum_probs=161.5
Q ss_pred cchHHHHHHHHHHHHhCCCCchhHHHHHHHHhh---------hcCCHHHHHHHHccCCC---CChhHHHHHHHHHHhcCC
Q 040319 452 GFHEMGKQIHSYALKTGFSSDLGVANSMVSMYF---------KCCNMSNAIKAFNKMPS---HDIVSWNGLIAGHLLHRQ 519 (812)
Q Consensus 452 ~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~---------k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~ 519 (812)
+.++.|...+...++... .+...+..|..+|. ..+++++|...+++..+ .+...|..+...+...|+
T Consensus 275 ~~~~~A~~~~~~Al~ldP-~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSP-NSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC
Confidence 456788888888887432 23455555555443 33458899999988765 456788888889999999
Q ss_pred hHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCCc-chHHHHHHHHhhcCChHHHH
Q 040319 520 GDEALAVWSSMEKASIKPDA-ITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTS-EHYASLVSVLGYWGFLEEAE 597 (812)
Q Consensus 520 ~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~y~~li~~l~~~g~~~~A~ 597 (812)
+++|+..|++.++ ..|+. ..+..+..++.. .|++++|...++...+ +.|+. ..+..+...+...|++++|+
T Consensus 354 ~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~~--~G~~~eAi~~~~~Al~---l~P~~~~~~~~~~~~~~~~g~~eeA~ 426 (553)
T PRK12370 354 YIVGSLLFKQANL--LSPISADIKYYYGWNLFM--AGQLEEALQTINECLK---LDPTRAAAGITKLWITYYHTGIDDAI 426 (553)
T ss_pred HHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHh---cCCCChhhHHHHHHHHHhccCHHHHH
Confidence 9999999999999 77886 456666667888 9999999999999987 45653 23334455577789999999
Q ss_pred HHHHhCC--CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCCcchHHHHHHHHHh
Q 040319 598 ETINNMP--FQPK-VSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWHNSELVREDMRE 671 (812)
Q Consensus 598 ~~~~~m~--~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 671 (812)
+.+++.. ..|+ +..+..+..++...|+.++|+..++++....|.+......++..|...| ++|...++.+.+
T Consensus 427 ~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 427 RLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLE 501 (553)
T ss_pred HHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHH
Confidence 9998864 2464 4456666667788999999999999999899988888888999999888 488887777654
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.92 E-value=4e-06 Score=85.54 Aligned_cols=81 Identities=10% Similarity=-0.002 Sum_probs=53.4
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCc-hHHHHHHHHHhhh
Q 040319 69 SLISGLAKLGREEEAIELFFRMRSEGIVPN-EHSFVAILTACIRLLELELGFQIHALIVKMGCVDS-VFVTNALMGLYGK 146 (812)
Q Consensus 69 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~y~~ 146 (812)
..-.-|.++|.+++|+++|.+..+. .|| +..|...--+|...|+|+...+--...++. .|+ +-.+..--+++-.
T Consensus 120 ~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A~E~ 195 (606)
T KOG0547|consen 120 TKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASAHEQ 195 (606)
T ss_pred hhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHHHHh
Confidence 3445577889999999999998874 677 777888888888889988877655554443 333 2233333344444
Q ss_pred cCCCHHHH
Q 040319 147 FSFCLDYL 154 (812)
Q Consensus 147 ~g~~~~~a 154 (812)
.| .+++|
T Consensus 196 lg-~~~ea 202 (606)
T KOG0547|consen 196 LG-KFDEA 202 (606)
T ss_pred hc-cHHHH
Confidence 55 44444
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.8e-07 Score=93.13 Aligned_cols=196 Identities=13% Similarity=0.107 Sum_probs=121.4
Q ss_pred eeeHHHHHHHHHcCChhhHHHHHHHhcccCCCCCChhhHHHHHHHhcCccchHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 040319 403 IIWTSMICGYARSGKPEHAILLFHQSQSEATVVPDEIALTSVLGVCGTLGFHEMGKQIHSYALKTGFSSDLGVANSMVSM 482 (812)
Q Consensus 403 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~ 482 (812)
..+..+...|...|++++|++.+++... ..|+ +...+..+...
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~---~~p~----------------------------------~~~~~~~la~~ 74 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALE---HDPD----------------------------------DYLAYLALALY 74 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCcc----------------------------------cHHHHHHHHHH
Confidence 3455666677777777777777776654 2222 23344455556
Q ss_pred hhhcCCHHHHHHHHccCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcCCCCchHH
Q 040319 483 YFKCCNMSNAIKAFNKMPS---HDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDA-ITFVLIISAYRYTNLNLVD 558 (812)
Q Consensus 483 y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~~~g~~~ 558 (812)
|...|++++|.+.|++..+ .+...+..+...|...|++++|++.|++.......|.. ..+..+...+.. .|+++
T Consensus 75 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~ 152 (234)
T TIGR02521 75 YQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALK--AGDFD 152 (234)
T ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHH--cCCHH
Confidence 6666666666666655443 33455666666777777777777777777664322322 334444455555 77777
Q ss_pred HHHHHHHHhhhhcCccC-CcchHHHHHHHHhhcCChHHHHHHHHhCC-C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 040319 559 SCRKLFLSMKTIYNIEP-TSEHYASLVSVLGYWGFLEEAEETINNMP-F-QPKVSVWRALLDSCRIRLNTTIGKRVAKHI 635 (812)
Q Consensus 559 ~a~~~~~~m~~~~~~~p-~~~~y~~li~~l~~~g~~~~A~~~~~~m~-~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 635 (812)
+|...|+...+. .| +...+..+...+...|++++|.+.+++.. . +++...+..+...+...|+.+.|....+.+
T Consensus 153 ~A~~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 229 (234)
T TIGR02521 153 KAEKYLTRALQI---DPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQL 229 (234)
T ss_pred HHHHHHHHHHHh---CcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 777777776652 23 34566777777777788888877777643 2 234555556666677778888888777766
Q ss_pred HccCC
Q 040319 636 LAMEP 640 (812)
Q Consensus 636 ~~~~p 640 (812)
.+..|
T Consensus 230 ~~~~~ 234 (234)
T TIGR02521 230 QKLFP 234 (234)
T ss_pred HhhCc
Confidence 65543
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.90 E-value=3.5e-06 Score=90.86 Aligned_cols=376 Identities=12% Similarity=0.044 Sum_probs=195.1
Q ss_pred cchhHHHHHHHHHhhCChhHHHHHhccCCC---CCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHH-
Q 040319 267 DIITLTEIIIAYMEFGYVDLAVEIFDKMPE---KNSVSYNALLAGYCKNGKAMEALGLFVKLLEEGLVLTEFTLTSVVN- 342 (812)
Q Consensus 267 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~- 342 (812)
|...|..+.-++...|+++.+.+.|++... .....|+.+-..|...|.-..|..++++-......|+..+--.+..
T Consensus 322 d~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmask 401 (799)
T KOG4162|consen 322 DAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASK 401 (799)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHH
Confidence 445566666777777777777777776653 3345677777788888888888888877665544454444333333
Q ss_pred Hh-ccchhhhhHHHHHhhHHHhc--CC--CchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCCceeeeHHHHHHHHHcCC
Q 040319 343 AC-GLIMEAKLSEQIHGFVMKFG--LG--SNDCIEAALLDMLTRCGRMADAEKMFYRWPTDRDDSIIWTSMICGYARSGK 417 (812)
Q Consensus 343 a~-~~~~~~~~a~~i~~~~~~~g--~~--~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~ 417 (812)
.| .+.+..+++..+-..++... .. .....+-.+.-+|...-. . ..++. -+...
T Consensus 402 lc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~-------------~---a~~~s------eR~~~ 459 (799)
T KOG4162|consen 402 LCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQAR-------------Q---ANLKS------ERDAL 459 (799)
T ss_pred HHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhh-------------c---CCChH------HHHHH
Confidence 23 23455555555554444411 00 111122222222221100 0 00000 00111
Q ss_pred hhhHHHHHHHhcccCCCCCChhhHHHHHHHhcCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHhhhcCCHHHHHHHHc
Q 040319 418 PEHAILLFHQSQSEATVVPDEIALTSVLGVCGTLGFHEMGKQIHSYALKTGFSSDLGVANSMVSMYFKCCNMSNAIKAFN 497 (812)
Q Consensus 418 ~~~A~~~~~~m~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~ 497 (812)
..++++.+++..+..+-.|+..-|.++- ++-.++++.|.+...+..+.+-..++..|..|.-.+.-.+++.+|+.+.+
T Consensus 460 h~kslqale~av~~d~~dp~~if~lalq--~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd 537 (799)
T KOG4162|consen 460 HKKSLQALEEAVQFDPTDPLVIFYLALQ--YAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVD 537 (799)
T ss_pred HHHHHHHHHHHHhcCCCCchHHHHHHHH--HHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence 2344555555544233334333333332 23344555555555555555444555555555555555666666655554
Q ss_pred cCCC--CC-h--------------------hHHHHHHHH------HHhcCChHHHHHHHHHHHHCCCCC-CH-HHHHHHH
Q 040319 498 KMPS--HD-I--------------------VSWNGLIAG------HLLHRQGDEALAVWSSMEKASIKP-DA-ITFVLII 546 (812)
Q Consensus 498 ~~~~--~~-~--------------------~~~~~li~~------~~~~g~~~~A~~l~~~m~~~g~~p-d~-~t~~~ll 546 (812)
...+ ++ - .+...++.. .-+.|+-...+++...+.-.--.| |. .|+..+.
T Consensus 538 ~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls 617 (799)
T KOG4162|consen 538 AALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLS 617 (799)
T ss_pred HHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHH
Confidence 3322 11 0 000011100 011111122222222221110011 11 2333332
Q ss_pred HHh-cCCCCchHHHHHHHHHHhhhhcCccCC--------cchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHH
Q 040319 547 SAY-RYTNLNLVDSCRKLFLSMKTIYNIEPT--------SEHYASLVSVLGYWGFLEEAEETINNMP-FQP-KVSVWRAL 615 (812)
Q Consensus 547 ~a~-~~~~~g~~~~a~~~~~~m~~~~~~~p~--------~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~l 615 (812)
.-. ++.+.-..+.. +.. .-..|. ...|....+.+.+.+..++|..-+.+.. +.| ....|.-.
T Consensus 618 ~l~a~~~~~~~se~~------Lp~-s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~ 690 (799)
T KOG4162|consen 618 SLVASQLKSAGSELK------LPS-STVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLR 690 (799)
T ss_pred HHHHhhhhhcccccc------cCc-ccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHh
Confidence 211 22000011111 221 223333 3467788899999999999997776654 455 45566666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCCcchHHH--HHHHHHhCC
Q 040319 616 LDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWHNSEL--VREDMREKG 673 (812)
Q Consensus 616 l~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~--~~~~m~~~g 673 (812)
...+-..|+.++|.+.+..++.++|+++.....++.+|.+.|+-.-|.. +...+.+.+
T Consensus 691 G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d 750 (799)
T KOG4162|consen 691 GLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD 750 (799)
T ss_pred hHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC
Confidence 6667788999999999999999999999999999999999998776666 666665443
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.85 E-value=6.2e-08 Score=93.20 Aligned_cols=227 Identities=15% Similarity=0.133 Sum_probs=151.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCCCCCceeeeHHHHHHHHHcCChhhHHHHHHHhcccCCCCCChhhHHHHHHHhcCcc
Q 040319 373 AALLDMLTRCGRMADAEKMFYRWPTDRDDSIIWTSMICGYARSGKPEHAILLFHQSQSEATVVPDEIALTSVLGVCGTLG 452 (812)
Q Consensus 373 ~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~a~~~~~ 452 (812)
+-+...|.+.|.+.+|++.|+......+-+.||--+-+.|.+..++..|+.+|.+-.+ ..|-.+||.
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld---~fP~~VT~l---------- 293 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLD---SFPFDVTYL---------- 293 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhh---cCCchhhhh----------
Confidence 4556666666666666666665443444455666666666666666666666665554 444444442
Q ss_pred chHHHHHHHHHHHHhCCCCchhHHHHHHHHhhhcCCHHHHHHHHccCCC---CChhHHHHHHHHHHhcCChHHHHHHHHH
Q 040319 453 FHEMGKQIHSYALKTGFSSDLGVANSMVSMYFKCCNMSNAIKAFNKMPS---HDIVSWNGLIAGHLLHRQGDEALAVWSS 529 (812)
Q Consensus 453 ~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~ 529 (812)
.-+...+-..++.++|.++++...+ -|+.+...+..+|...++++-|+..|++
T Consensus 294 ------------------------~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRR 349 (478)
T KOG1129|consen 294 ------------------------LGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRR 349 (478)
T ss_pred ------------------------hhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHH
Confidence 2223333444555666666655443 3444445556667777788888888888
Q ss_pred HHHCCCCCCHHHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCCcchHHHHHHHHhhcCChHHHHHHHHhCCCCCC-
Q 040319 530 MEKASIKPDAITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLEEAEETINNMPFQPK- 608 (812)
Q Consensus 530 m~~~g~~pd~~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~~~p~- 608 (812)
+++.|+.. ...|+.+.-+|.. .+.+|-++..|++... .| ..|+
T Consensus 350 iLqmG~~s-peLf~NigLCC~y--aqQ~D~~L~sf~RAls--------------------------------ta-t~~~~ 393 (478)
T KOG1129|consen 350 ILQMGAQS-PELFCNIGLCCLY--AQQIDLVLPSFQRALS--------------------------------TA-TQPGQ 393 (478)
T ss_pred HHHhcCCC-hHHHhhHHHHHHh--hcchhhhHHHHHHHHh--------------------------------hc-cCcch
Confidence 88877543 3445555556666 6667766666655543 01 1232
Q ss_pred -HHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCCcchHHHHHHHHHhC
Q 040319 609 -VSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWHNSELVREDMREK 672 (812)
Q Consensus 609 -~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 672 (812)
+.+|-.|.......||+..|.+.++-++.-+|++..+++.|+-+-.+.|+.++|..+....+..
T Consensus 394 aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 394 AADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred hhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 4578888777788899999999999999999999999999999999999999999999987653
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.85 E-value=2.9e-05 Score=81.41 Aligned_cols=439 Identities=18% Similarity=0.163 Sum_probs=223.2
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchHHHHH--HHHHhh--h
Q 040319 71 ISGLAKLGREEEAIELFFRMRSEGIVPNEHSFVAILTACIRLLELELGFQIHALIVKMGCVDSVFVTNA--LMGLYG--K 146 (812)
Q Consensus 71 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~--li~~y~--~ 146 (812)
+.-+..+|++++|.+.-.+....+ +-|...+..=+-++.+.+.++.|..+.. +.+. ..+++. +=.+|| +
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ik---k~~~---~~~~~~~~fEKAYc~Yr 91 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIK---KNGA---LLVINSFFFEKAYCEYR 91 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHH---hcch---hhhcchhhHHHHHHHHH
Confidence 455667888999999998888765 4456667777777788888888774333 2221 111121 234444 4
Q ss_pred cCCCHHHHHHHHhcCCCCCcchHHHHHHHHHcCCChhHHHHHHHHhHhcCCCC-CCcchHHHHHHHHhcCCChHHHHHHH
Q 040319 147 FSFCLDYLLKLFDELPHKDTVSWNTVISSVVNEFEYEKAFELFRDMKRDNGFT-VDYFTISTLLTACTGCFVLMEGRAVH 225 (812)
Q Consensus 147 ~g~~~~~a~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~-pd~~t~~~ll~~~~~~~~~~~a~~~~ 225 (812)
.+ .+++|.+.++....-+..+-..=...+.+.|++++|+++|+.+ ..++.. -|...-..++.+... .+.
T Consensus 92 ln-k~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L-~kn~~dd~d~~~r~nl~a~~a~-------l~~- 161 (652)
T KOG2376|consen 92 LN-KLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHL-AKNNSDDQDEERRANLLAVAAA-------LQV- 161 (652)
T ss_pred cc-cHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHH-HhcCCchHHHHHHHHHHHHHHh-------hhH-
Confidence 56 7788888777444444445555556677778888888888877 332221 111111222221110 000
Q ss_pred HHHHHhCCCCc---hhHHHHHHHHHHhcCChHHHHHHHhcCCCCcchhHHHHHHHHHhhCChhHHHHHhc-cCCCCCc--
Q 040319 226 AHAIRIGLGAN---LSVNNALIGFYTKCGRVKDVVALLERMPVMDIITLTEIIIAYMEFGYVDLAVEIFD-KMPEKNS-- 299 (812)
Q Consensus 226 ~~~~~~g~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~-~m~~~d~-- 299 (812)
..+......|+ ...|| ....+...|++.+|+++++... ++-. .+.+.|.
T Consensus 162 ~~~q~v~~v~e~syel~yN-~Ac~~i~~gky~qA~elL~kA~------------------------~~~~e~l~~~d~~e 216 (652)
T KOG2376|consen 162 QLLQSVPEVPEDSYELLYN-TACILIENGKYNQAIELLEKAL------------------------RICREKLEDEDTNE 216 (652)
T ss_pred HHHHhccCCCcchHHHHHH-HHHHHHhcccHHHHHHHHHHHH------------------------HHHHHhhcccccch
Confidence 01111122221 11222 2334455666666666554430 0000 0011110
Q ss_pred ---c-----cHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHH---HHHhccchhhhhH--HHH----------
Q 040319 300 ---V-----SYNALLAGYCKNGKAMEALGLFVKLLEEGLVLTEFTLTSV---VNACGLIMEAKLS--EQI---------- 356 (812)
Q Consensus 300 ---~-----~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l---l~a~~~~~~~~~a--~~i---------- 356 (812)
. .---|.-++...|+.++|..+|...+... .+|....... |-+.....++-.+ ...
T Consensus 217 Eeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~ 295 (652)
T KOG2376|consen 217 EEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAE 295 (652)
T ss_pred hhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHH
Confidence 0 01123334556677777777777766654 2233221111 1122111111110 000
Q ss_pred -HhhHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCCceeeeHHHHHHHH--HcCChhhHHHHHHHhcccCC
Q 040319 357 -HGFVMKFGLGSNDCIEAALLDMLTRCGRMADAEKMFYRWPTDRDDSIIWTSMICGYA--RSGKPEHAILLFHQSQSEAT 433 (812)
Q Consensus 357 -~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~--~~g~~~~A~~~~~~m~~~~g 433 (812)
+.......-......-+.|+.+|. +..+.++++-..++...| ...+.+++.... +......|.+++...-.
T Consensus 296 ~~l~~Ls~~qk~~i~~N~~lL~l~t--nk~~q~r~~~a~lp~~~p-~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~--- 369 (652)
T KOG2376|consen 296 FLLSKLSKKQKQAIYRNNALLALFT--NKMDQVRELSASLPGMSP-ESLFPILLQEATKVREKKHKKAIELLLQFAD--- 369 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHhCCccCc-hHHHHHHHHHHHHHHHHHHhhhHHHHHHHhc---
Confidence 000000111112222345555554 556777888777775556 455555554332 22346677777766654
Q ss_pred CCCCh--hhHHHHHHHhcCccchHHHHHHHH--------HHHHhCCCCchhHHHHHHHHhhhcCCHHHHHHHHccCCC--
Q 040319 434 VVPDE--IALTSVLGVCGTLGFHEMGKQIHS--------YALKTGFSSDLGVANSMVSMYFKCCNMSNAIKAFNKMPS-- 501 (812)
Q Consensus 434 ~~p~~--~t~~~ll~a~~~~~~~~~a~~~~~--------~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~-- 501 (812)
-.|+. ...-..+......|+++.|..++. .+.+.+. .+.+-.+++.+|.+.++.+.|..++++...
T Consensus 370 ~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~--~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~ 447 (652)
T KOG2376|consen 370 GHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKH--LPGTVGAIVALYYKIKDNDSASAVLDSAIKWW 447 (652)
T ss_pred cCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhcc--ChhHHHHHHHHHHhccCCccHHHHHHHHHHHH
Confidence 33433 233344455677888888888887 4444333 344556778888888888777777765432
Q ss_pred ----CChh----HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCchHHHHHHHH
Q 040319 502 ----HDIV----SWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDAITFVLIISAYRYTNLNLVDSCRKLF 564 (812)
Q Consensus 502 ----~~~~----~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~g~~~~a~~~~ 564 (812)
+... .|.-+...-.++|+-++|..+++++.+. -.+|..+...++.+|+. =+++.|..+-
T Consensus 448 ~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~-n~~d~~~l~~lV~a~~~---~d~eka~~l~ 514 (652)
T KOG2376|consen 448 RKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKF-NPNDTDLLVQLVTAYAR---LDPEKAESLS 514 (652)
T ss_pred HHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHh-CCchHHHHHHHHHHHHh---cCHHHHHHHh
Confidence 2222 2233333334667777777777777773 23444666667777665 2455555443
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.6e-05 Score=84.61 Aligned_cols=105 Identities=14% Similarity=0.102 Sum_probs=50.7
Q ss_pred HHHHcCChhhHHHHHHHhcccCCCCCChhhHHHHHHHhcCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHhhhcCCHH
Q 040319 411 GYARSGKPEHAILLFHQSQSEATVVPDEIALTSVLGVCGTLGFHEMGKQIHSYALKTGFSSDLGVANSMVSMYFKCCNMS 490 (812)
Q Consensus 411 ~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~ 490 (812)
+-.....+.+|+.+++.++. . +.-..-|..+..-|++.|+++.|++++-.. ..++--|+||.+.|+++
T Consensus 741 aai~akew~kai~ildniqd-q--k~~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~ 808 (1636)
T KOG3616|consen 741 AAIGAKEWKKAISILDNIQD-Q--KTASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWE 808 (1636)
T ss_pred HHhhhhhhhhhHhHHHHhhh-h--ccccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHH
Confidence 33444555666666655554 1 122223444455556666666665555322 12233455666666666
Q ss_pred HHHHHHccCCCCC--hhHHHHHHHHHHhcCChHHHHHHH
Q 040319 491 NAIKAFNKMPSHD--IVSWNGLIAGHLLHRQGDEALAVW 527 (812)
Q Consensus 491 ~A~~~f~~~~~~~--~~~~~~li~~~~~~g~~~~A~~l~ 527 (812)
+|.++-.+...|. +.+|-+-..-+-.+|++.+|.++|
T Consensus 809 da~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqly 847 (1636)
T KOG3616|consen 809 DAFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLY 847 (1636)
T ss_pred HHHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhhee
Confidence 6665555544432 233333333344455555555544
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=6.2e-07 Score=92.19 Aligned_cols=229 Identities=11% Similarity=-0.010 Sum_probs=151.6
Q ss_pred CChhhHHHHHHHhcccCCCCCCh--hhHHHHHHHhcCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHhhhcCCHHHHH
Q 040319 416 GKPEHAILLFHQSQSEATVVPDE--IALTSVLGVCGTLGFHEMGKQIHSYALKTGFSSDLGVANSMVSMYFKCCNMSNAI 493 (812)
Q Consensus 416 g~~~~A~~~~~~m~~~~g~~p~~--~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~ 493 (812)
+..+.++.-+.++.......|+. ..|...-..+...|..+.|...+...++.. +.+...++.+...|...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 34455666666665422233332 234444455666777777777777776643 346778899999999999999999
Q ss_pred HHHccCCC--C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCchHHHHHHHHHHhhhh
Q 040319 494 KAFNKMPS--H-DIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDAITFVLIISAYRYTNLNLVDSCRKLFLSMKTI 570 (812)
Q Consensus 494 ~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~ 570 (812)
..|+...+ | +..+|..+...+...|++++|++.|++..+ ..|+..........+.. .++.++|...|+....
T Consensus 119 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~--~~P~~~~~~~~~~l~~~--~~~~~~A~~~l~~~~~- 193 (296)
T PRK11189 119 EAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQ--DDPNDPYRALWLYLAES--KLDPKQAKENLKQRYE- 193 (296)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHc--cCCHHHHHHHHHHHHh-
Confidence 99998765 4 467888899999999999999999999998 67876422222222334 6789999999976543
Q ss_pred cCccCCcchHHHHHHHHhhcCChHH--HHHHHHh-CC----CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCC-C
Q 040319 571 YNIEPTSEHYASLVSVLGYWGFLEE--AEETINN-MP----FQP-KVSVWRALLDSCRIRLNTTIGKRVAKHILAMEP-Q 641 (812)
Q Consensus 571 ~~~~p~~~~y~~li~~l~~~g~~~~--A~~~~~~-m~----~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p-~ 641 (812)
...|+...+ .++..+ .|+..+ +.+.+.+ .. ..| ....|..+...+...|+.++|...++++++++| +
T Consensus 194 -~~~~~~~~~-~~~~~~--lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~ 269 (296)
T PRK11189 194 -KLDKEQWGW-NIVEFY--LGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYN 269 (296)
T ss_pred -hCCccccHH-HHHHHH--ccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCch
Confidence 123333222 333333 444433 3333332 11 222 345788899999999999999999999999997 4
Q ss_pred CCchHHHHHhhhh
Q 040319 642 DPATYILVSNLYS 654 (812)
Q Consensus 642 ~~~~~~~l~~~y~ 654 (812)
...+-..++.+..
T Consensus 270 ~~e~~~~~~e~~~ 282 (296)
T PRK11189 270 FVEHRYALLELAL 282 (296)
T ss_pred HHHHHHHHHHHHH
Confidence 4555444554433
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.83 E-value=3.5e-05 Score=75.46 Aligned_cols=284 Identities=14% Similarity=0.099 Sum_probs=153.0
Q ss_pred HHHHHccCChhhHHHHHhcCCC---CChhhHHH-HHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCh
Q 040319 40 ISAYLKLGHVADAYKIFYGLSS---PNVVSFTS-LISGLAKLGREEEAIELFFRMRSEGIVPNEHSFVAILTACIRLLEL 115 (812)
Q Consensus 40 i~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~-li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~ 115 (812)
+.-+....++..|+.+++.-.. ....+.+. +..++...|++++|+..|..+.+.. .|+...+..+-.+.--.|.+
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHH
Confidence 3445556777888887764331 11112222 3445678899999999998877754 44555555555444556777
Q ss_pred HHHHHHHHHHHHhCCCCchHHHHH-HHHHhhhcCCCHHHHHHHHhcCCCCCcchHHHHHHHHHcCCChhHHHHHHHHhHh
Q 040319 116 ELGFQIHALIVKMGCVDSVFVTNA-LMGLYGKFSFCLDYLLKLFDELPHKDTVSWNTVISSVVNEFEYEKAFELFRDMKR 194 (812)
Q Consensus 116 ~~a~~~~~~~~~~g~~~~~~~~~~-li~~y~~~g~~~~~a~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 194 (812)
.+|+++-.. .|+....+. |...--|.+ +-......-+.+... ..---+|.+.....-.+++|+++|...+.
T Consensus 108 ~eA~~~~~k------a~k~pL~~RLlfhlahkln-dEk~~~~fh~~LqD~-~EdqLSLAsvhYmR~HYQeAIdvYkrvL~ 179 (557)
T KOG3785|consen 108 IEAKSIAEK------APKTPLCIRLLFHLAHKLN-DEKRILTFHSSLQDT-LEDQLSLASVHYMRMHYQEAIDVYKRVLQ 179 (557)
T ss_pred HHHHHHHhh------CCCChHHHHHHHHHHHHhC-cHHHHHHHHHHHhhh-HHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 777776554 344444444 445555667 666665555444322 11122333444444568899999998843
Q ss_pred cCCCCCCcchHHHHHHH-HhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc--CChHHHHHHHhcCCCCcchhH
Q 040319 195 DNGFTVDYFTISTLLTA-CTGCFVLMEGRAVHAHAIRIGLGANLSVNNALIGFYTKC--GRVKDVVALLERMPVMDIITL 271 (812)
Q Consensus 195 ~~g~~pd~~t~~~ll~~-~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~--g~~~~A~~l~~~~~~~~~~~~ 271 (812)
. .|+-...+.-+.. +.+..-.+.+.++++.-++. ++.+...-|....-..+. |+..+++. ..+.. +...-
T Consensus 180 d---n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~--k~lad-N~~~~ 252 (557)
T KOG3785|consen 180 D---NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEK--KELAD-NIDQE 252 (557)
T ss_pred c---ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHH--HHHHh-ccccc
Confidence 2 3555555444443 46777777788887776664 344444455444333332 33332221 11111 11111
Q ss_pred HHHHHHHHhhC-----ChhHHHHHhccCCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHH
Q 040319 272 TEIIIAYMEFG-----YVDLAVEIFDKMPEKNSVSYNALLAGYCKNGKAMEALGLFVKLLEEGLVLTEFTLTSVV 341 (812)
Q Consensus 272 ~~li~~~~~~g-----~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 341 (812)
-..+.-+++.+ .-+-|++++-.+.+-=+..--.|+--|.+.++..+|..+.+++.- ..|-++....+.
T Consensus 253 ~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv 325 (557)
T KOG3785|consen 253 YPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVV 325 (557)
T ss_pred chhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHH
Confidence 22344444443 345566665544332222333445557888999999888776532 344444444333
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.6e-05 Score=84.25 Aligned_cols=459 Identities=12% Similarity=0.078 Sum_probs=228.8
Q ss_pred ccCCchHHHHHHHHHHHhccCCCccchHHHHHHHHccCChhhHHHHHhcCCC---CChhhHHHHHHHHHhcCChhHHHHH
Q 040319 10 QCGEVSLAKAIHASLIKLLLEQDTRFGNPLISAYLKLGHVADAYKIFYGLSS---PNVVSFTSLISGLAKLGREEEAIEL 86 (812)
Q Consensus 10 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~ 86 (812)
..+....+....+.+++ +++-.+.+.....-.+...|+.++|......-.+ ..-+.|.++--.+-...++++|++.
T Consensus 19 E~kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKc 97 (700)
T KOG1156|consen 19 ETKQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKC 97 (700)
T ss_pred HHHHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHH
Confidence 34566667777777776 3344444444444445667899999988876554 4567899888888888999999999
Q ss_pred HHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHhhhcCCCHHHHHHHHhcCCCCCc
Q 040319 87 FFRMRSEGIVPNEHSFVAILTACIRLLELELGFQIHALIVKMGCVDSVFVTNALMGLYGKFSFCLDYLLKLFDELPHKDT 166 (812)
Q Consensus 87 ~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~~a~~~f~~~~~~~~ 166 (812)
|......+ +-|...+.-+--.-++.++++.... +.+.++. ......
T Consensus 98 y~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~---------------tr~~LLq------------------l~~~~r 143 (700)
T KOG1156|consen 98 YRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLE---------------TRNQLLQ------------------LRPSQR 143 (700)
T ss_pred HHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHH---------------HHHHHHH------------------hhhhhH
Confidence 99988754 2334444443333333333332222 1121211 122355
Q ss_pred chHHHHHHHHHcCCChhHHHHHHHHhHhcCCCCCCcchHHHHHHH------HhcCCChHHHHHHHHHHHHhCCCCchhHH
Q 040319 167 VSWNTVISSVVNEFEYEKAFELFRDMKRDNGFTVDYFTISTLLTA------CTGCFVLMEGRAVHAHAIRIGLGANLSVN 240 (812)
Q Consensus 167 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~------~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 240 (812)
..|..+..++.-.|++..|..+.++..+...-.|+...|.....- ....|..+.+.+.+...... +......-
T Consensus 144 a~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~ 222 (700)
T KOG1156|consen 144 ASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFE 222 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHh
Confidence 678888888888999999999998884333334665554333222 34556666666555443321 11122223
Q ss_pred HHHHHHHHhcCChHHHHHHHhcCCC--CcchhHH-HHHHHHHhhCChhHHH-HHhccCCC---CCcccHHHHHHHHHhCC
Q 040319 241 NALIGFYTKCGRVKDVVALLERMPV--MDIITLT-EIIIAYMEFGYVDLAV-EIFDKMPE---KNSVSYNALLAGYCKNG 313 (812)
Q Consensus 241 ~~li~~~~~~g~~~~A~~l~~~~~~--~~~~~~~-~li~~~~~~g~~~~A~-~~f~~m~~---~d~~~~~~li~~~~~~g 313 (812)
-.-.+.+.+.+++++|..++..+.. ||-..|. .+..++.+-.+.-++. .+|....+ +....-..=++......
T Consensus 223 e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~ee 302 (700)
T KOG1156|consen 223 ETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEE 302 (700)
T ss_pred hhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcch
Confidence 3445667777888888887777653 3333333 3344444333333333 44444332 10000000011111112
Q ss_pred ChHHHHHHHHHHHHcCCCCCHhHHHHHHHHhccchhhhhHHHHHhhHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHh
Q 040319 314 KAMEALGLFVKLLEEGLVLTEFTLTSVVNACGLIMEAKLSEQIHGFVMKFGLGSNDCIEAALLDMLTRCGRMADAEKMFY 393 (812)
Q Consensus 314 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~ 393 (812)
-.+..-+++..+.+.|+.|--..+.++.. .....+ +.-.|+..|...-....+....+
T Consensus 303 l~~~vdkyL~~~l~Kg~p~vf~dl~SLyk---~p~k~~-------------------~le~Lvt~y~~~L~~~~~f~~~D 360 (700)
T KOG1156|consen 303 LKEIVDKYLRPLLSKGVPSVFKDLRSLYK---DPEKVA-------------------FLEKLVTSYQHSLSGTGMFNFLD 360 (700)
T ss_pred hHHHHHHHHHHHhhcCCCchhhhhHHHHh---chhHhH-------------------HHHHHHHHHHhhcccccCCCccc
Confidence 23334455666666776654333333322 111111 11112222221111000000000
Q ss_pred cCCCCCCceeeeHH--HHHHHHHcCChhhHHHHHHHhcccCCCCCChhh-HHHHHHHhcCccchHHHHHHHHHHHHhCCC
Q 040319 394 RWPTDRDDSIIWTS--MICGYARSGKPEHAILLFHQSQSEATVVPDEIA-LTSVLGVCGTLGFHEMGKQIHSYALKTGFS 470 (812)
Q Consensus 394 ~~~~~~~~~~~~~~--li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t-~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~ 470 (812)
.-..++|....|+. ++..|-..|+++.|+..++.... -.|+.+- |..=.+.+...|.++.|..++....+.. .
T Consensus 361 ~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AId---HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~ 436 (700)
T KOG1156|consen 361 DGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAID---HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-T 436 (700)
T ss_pred ccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc---cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-c
Confidence 00012333334433 45556666666666666666554 3344332 2222244555666666666666655533 2
Q ss_pred CchhHHHHHHHHhhhcCCHHHHHHHHccCCCCC--h--------hHHHHH--HHHHHhcCChHHHHHHHHHH
Q 040319 471 SDLGVANSMVSMYFKCCNMSNAIKAFNKMPSHD--I--------VSWNGL--IAGHLLHRQGDEALAVWSSM 530 (812)
Q Consensus 471 ~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~--~--------~~~~~l--i~~~~~~g~~~~A~~l~~~m 530 (812)
+|..+-+--+....+..++++|..+.......+ . -.|-.+ ..+|.+.|++..|++-|...
T Consensus 437 aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i 508 (700)
T KOG1156|consen 437 ADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEI 508 (700)
T ss_pred hhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhH
Confidence 344444344555556666666666654443311 1 233332 23455555555555544443
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.78 E-value=2.4e-07 Score=99.11 Aligned_cols=238 Identities=14% Similarity=0.136 Sum_probs=152.0
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhcCCCC--------CCcee-eeHHHHHHHHHcCChhhHHHHHHHhcccCCCCCChh
Q 040319 369 DCIEAALLDMLTRCGRMADAEKMFYRWPTD--------RDDSI-IWTSMICGYARSGKPEHAILLFHQSQSEATVVPDEI 439 (812)
Q Consensus 369 ~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~--------~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~ 439 (812)
..+..-|..+|...|+++.|..+|+..... .+.+. ..+.+...|...+++.+|..+|+++.. +
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~---i----- 270 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALT---I----- 270 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH---H-----
Confidence 344445777777777777777777653311 11111 122344566667777777777766654 0
Q ss_pred hHHHHHHHhcCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHhhhcCCHHHHHHHHccCCC----------CChh-HHH
Q 040319 440 ALTSVLGVCGTLGFHEMGKQIHSYALKTGFSSDLGVANSMVSMYFKCCNMSNAIKAFNKMPS----------HDIV-SWN 508 (812)
Q Consensus 440 t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~----------~~~~-~~~ 508 (812)
.....-...+.-..+++.|...|.+.|++++|...+++..+ |.+. ..+
T Consensus 271 ---------------------~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~ 329 (508)
T KOG1840|consen 271 ---------------------REEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLS 329 (508)
T ss_pred ---------------------HHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHH
Confidence 00000000111233455566677777777777666554322 3332 355
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHC---CCCCCH----HHHHHHHHHhcCCCCchHHHHHHHHHHhhhhc-----CccCC
Q 040319 509 GLIAGHLLHRQGDEALAVWSSMEKA---SIKPDA----ITFVLIISAYRYTNLNLVDSCRKLFLSMKTIY-----NIEPT 576 (812)
Q Consensus 509 ~li~~~~~~g~~~~A~~l~~~m~~~---g~~pd~----~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~-----~~~p~ 576 (812)
.++..|...+++++|..+++...+. -..++. -+++.+-..+-+ .|.+++|.++|+++.... +..+.
T Consensus 330 ~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~--~gk~~ea~~~~k~ai~~~~~~~~~~~~~ 407 (508)
T KOG1840|consen 330 ELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLK--MGKYKEAEELYKKAIQILRELLGKKDYG 407 (508)
T ss_pred HHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHH--hcchhHHHHHHHHHHHHHHhcccCcChh
Confidence 6677788888888888888876542 123333 467778888888 899999999998776522 11222
Q ss_pred -cchHHHHHHHHhhcCChHHHHHHHHhCC--------CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHc
Q 040319 577 -SEHYASLVSVLGYWGFLEEAEETINNMP--------FQPK-VSVWRALLDSCRIRLNTTIGKRVAKHILA 637 (812)
Q Consensus 577 -~~~y~~li~~l~~~g~~~~A~~~~~~m~--------~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 637 (812)
-.+++.|...|.+.++.++|.++|.+.. ..|+ ..++..|...|+..|+++.|+++.++++.
T Consensus 408 ~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 408 VGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred hhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 4567888889999999998888887642 3344 46899999999999999999999888873
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.77 E-value=5.1e-06 Score=80.87 Aligned_cols=210 Identities=15% Similarity=0.129 Sum_probs=129.5
Q ss_pred HHHHHHHhhCChhHHHHHhccCCCCCcccHHHHH---HHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHhccchh
Q 040319 273 EIIIAYMEFGYVDLAVEIFDKMPEKNSVSYNALL---AGYCKNGKAMEALGLFVKLLEEGLVLTEFTLTSVVNACGLIME 349 (812)
Q Consensus 273 ~li~~~~~~g~~~~A~~~f~~m~~~d~~~~~~li---~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~ 349 (812)
.+-..+...|++.+|+.-|....+-|+..|.++. ..|...|+..-|+.=|...++ .+||-..-..
T Consensus 43 ElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~ARi---------- 110 (504)
T KOG0624|consen 43 ELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAARI---------- 110 (504)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHHHH----------
Confidence 3455666667777777777777777777777765 357777777777766666665 3455322110
Q ss_pred hhhHHHHHhhHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCCceeeeHHHHHHHHHcCChhhHHHHHHHhc
Q 040319 350 AKLSEQIHGFVMKFGLGSNDCIEAALLDMLTRCGRMADAEKMFYRWPTDRDDSIIWTSMICGYARSGKPEHAILLFHQSQ 429 (812)
Q Consensus 350 ~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 429 (812)
.. ...+.+.|.++.|..=|+.+....|+. +....++.+.-..++-.
T Consensus 111 ------------QR------------g~vllK~Gele~A~~DF~~vl~~~~s~---~~~~eaqskl~~~~e~~------- 156 (504)
T KOG0624|consen 111 ------------QR------------GVVLLKQGELEQAEADFDQVLQHEPSN---GLVLEAQSKLALIQEHW------- 156 (504)
T ss_pred ------------Hh------------chhhhhcccHHHHHHHHHHHHhcCCCc---chhHHHHHHHHhHHHHH-------
Confidence 00 112457788888888887766332211 11111111111111111
Q ss_pred ccCCCCCChhhHHHHHHHhcCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHhhhcCCHHHHHHHHcc---CCCCChhH
Q 040319 430 SEATVVPDEIALTSVLGVCGTLGFHEMGKQIHSYALKTGFSSDLGVANSMVSMYFKCCNMSNAIKAFNK---MPSHDIVS 506 (812)
Q Consensus 430 ~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~---~~~~~~~~ 506 (812)
.....+......|+...+......+++.. +-|...+..-.++|...|++..|..-+.. +...+...
T Consensus 157 ----------~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~ 225 (504)
T KOG0624|consen 157 ----------VLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEG 225 (504)
T ss_pred ----------HHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHH
Confidence 12223333444566666666666666532 34777777778899999999999765554 44466677
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH
Q 040319 507 WNGLIAGHLLHRQGDEALAVWSSMEKASIKPDAIT 541 (812)
Q Consensus 507 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t 541 (812)
..-+-..+...|+.+.++...++.++ +.||...
T Consensus 226 ~ykis~L~Y~vgd~~~sL~~iRECLK--ldpdHK~ 258 (504)
T KOG0624|consen 226 HYKISQLLYTVGDAENSLKEIRECLK--LDPDHKL 258 (504)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHc--cCcchhh
Confidence 77777888889999999999999998 8899743
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.77 E-value=8.6e-06 Score=90.01 Aligned_cols=177 Identities=14% Similarity=0.083 Sum_probs=121.5
Q ss_pred HHHHHHHHHHHhCCCCc-hHHHHHHHHHhhhcCCCHHHHHHHHhcCCC---CCcchHHHHHHHHHcCCChhHHHHHHHHh
Q 040319 117 LGFQIHALIVKMGCVDS-VFVTNALMGLYGKFSFCLDYLLKLFDELPH---KDTVSWNTVISSVVNEFEYEKAFELFRDM 192 (812)
Q Consensus 117 ~a~~~~~~~~~~g~~~~-~~~~~~li~~y~~~g~~~~~a~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m 192 (812)
.+..++..+....+.++ ...|..|-..|.... +...|.+.|+..-+ .+..+|......|++..+++.|+.+.-..
T Consensus 474 ~~~al~ali~alrld~~~apaf~~LG~iYrd~~-Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~ 552 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVSLAPAFAFLGQIYRDSD-DMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRA 552 (1238)
T ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHH
Confidence 34445555555555555 346777777888877 88899999997654 47788999999999999999999984332
Q ss_pred HhcCCCCCCcchHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCcchhHH
Q 040319 193 KRDNGFTVDYFTISTLLTACTGCFVLMEGRAVHAHAIRIGLGANLSVNNALIGFYTKCGRVKDVVALLERMPVMDIITLT 272 (812)
Q Consensus 193 ~~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~ 272 (812)
.+......-...|...--.+...++...+..-++...+.. +.|...|..|..+|..+|+...|.++|.+....++..+.
T Consensus 553 ~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y 631 (1238)
T KOG1127|consen 553 AQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKY 631 (1238)
T ss_pred hhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHH
Confidence 1111111111122222233556777888888888777754 567888999999999999999999999888655554333
Q ss_pred H---HHHHHHhhCChhHHHHHhccCC
Q 040319 273 E---IIIAYMEFGYVDLAVEIFDKMP 295 (812)
Q Consensus 273 ~---li~~~~~~g~~~~A~~~f~~m~ 295 (812)
. .....+..|.+.+|...+..+.
T Consensus 632 ~~fk~A~~ecd~GkYkeald~l~~ii 657 (1238)
T KOG1127|consen 632 GRFKEAVMECDNGKYKEALDALGLII 657 (1238)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3 2334566788888888877664
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.76 E-value=5e-05 Score=84.20 Aligned_cols=610 Identities=13% Similarity=0.002 Sum_probs=295.4
Q ss_pred ccchHHHHHHHHccCChhhHHHHHhcCCC---CChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-hhh--HHHHH
Q 040319 33 TRFGNPLISAYLKLGHVADAYKIFYGLSS---PNVVSFTSLISGLAKLGREEEAIELFFRMRSEGIVPN-EHS--FVAIL 106 (812)
Q Consensus 33 ~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~--~~~ll 106 (812)
...|..|-..|+...+..-|.+.|+..-+ .+..++......|++..+++.|..+.-.--+. .|- ... |..+-
T Consensus 492 apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qk--a~a~~~k~nW~~rG 569 (1238)
T KOG1127|consen 492 APAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQK--APAFACKENWVQRG 569 (1238)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhh--chHHHHHhhhhhcc
Confidence 34577777888777777788888876543 45567777888888888888888772221111 111 111 11111
Q ss_pred HHHHhcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHhhhcCCCHHHHHHHHhcCCCCCcchHHHH---HHHHHcCCChh
Q 040319 107 TACIRLLELELGFQIHALIVKMGCVDSVFVTNALMGLYGKFSFCLDYLLKLFDELPHKDTVSWNTV---ISSVVNEFEYE 183 (812)
Q Consensus 107 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~~a~~~f~~~~~~~~~~~~~l---i~~~~~~g~~~ 183 (812)
-.+...++...+..-+....+.. +.|...|..|..+|.++| +...|.++|++...-++.+|-.- ...-+..|.+.
T Consensus 570 ~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sG-ry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYk 647 (1238)
T KOG1127|consen 570 PYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESG-RYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYK 647 (1238)
T ss_pred ccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcC-ceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHH
Confidence 22233444444444444443332 346677788888888888 88888888877765444333321 22334567788
Q ss_pred HHHHHHHHhHhcC-----CCCCCcchHHHHHHHHhcCCChHHHHHHHH-------HHHHhCCCCchhHHHHHHHHHHhcC
Q 040319 184 KAFELFRDMKRDN-----GFTVDYFTISTLLTACTGCFVLMEGRAVHA-------HAIRIGLGANLSVNNALIGFYTKCG 251 (812)
Q Consensus 184 ~A~~l~~~m~~~~-----g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~-------~~~~~g~~~~~~~~~~li~~~~~~g 251 (812)
+|++.+....... +..--..++..+...+...|-...+..+++ ..+......+...|-.+
T Consensus 648 eald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~a-------- 719 (1238)
T KOG1127|consen 648 EALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVA-------- 719 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHH--------
Confidence 8877776652211 111111122222222222222222222222 22222212222222211
Q ss_pred ChHHHHHHHhcCCCCcchhHHHHHHHHH----hhCCh---h---HHHHHhccCC--CCCcccHHHHHHHHHh----CC--
Q 040319 252 RVKDVVALLERMPVMDIITLTEIIIAYM----EFGYV---D---LAVEIFDKMP--EKNSVSYNALLAGYCK----NG-- 313 (812)
Q Consensus 252 ~~~~A~~l~~~~~~~~~~~~~~li~~~~----~~g~~---~---~A~~~f~~m~--~~d~~~~~~li~~~~~----~g-- 313 (812)
.+|..+|-... |+.+ -..++..+. ..+.. | -+.+.+-.-. ..+..+|..++..|.+ .|
T Consensus 720 --sdac~~f~q~e-~~~v-n~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et 795 (1238)
T KOG1127|consen 720 --SDACYIFSQEE-PSIV-NMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGET 795 (1238)
T ss_pred --hHHHHHHHHhc-ccch-HHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCc
Confidence 12333333332 2211 111111111 11111 1 0001110000 0235667666655544 11
Q ss_pred --ChHHHHHHHHHHHHcCCCCCHhHHHHHHHHhccchhhhhHHHHHhhHHHhcC-CCchhHHHHHHHHHHhcCCHHHHHH
Q 040319 314 --KAMEALGLFVKLLEEGLVLTEFTLTSVVNACGLIMEAKLSEQIHGFVMKFGL-GSNDCIEAALLDMLTRCGRMADAEK 390 (812)
Q Consensus 314 --~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~-~~~~~~~~~Li~~y~~~g~~~~A~~ 390 (812)
+...|+..+.+.++. ..+...|-..+...+..|++ +...|..+...-. +....+|..+--.+.+..+++.|..
T Consensus 796 ~~~~~~Ai~c~KkaV~L--~ann~~~WnaLGVlsg~gnv--a~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~ 871 (1238)
T KOG1127|consen 796 MKDACTAIRCCKKAVSL--CANNEGLWNALGVLSGIGNV--ACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEP 871 (1238)
T ss_pred chhHHHHHHHHHHHHHH--hhccHHHHHHHHHhhccchh--hhhhhhhhhhhhccccchhheeccceeEEecccHHHhhH
Confidence 234667777776653 33444444445555444444 3444555554433 3456677777778888999999999
Q ss_pred HHhcCCCC-CCceeeeHHHHHHHHHcCChhhHHHHHHHh---cccCCCCCChhhHHHHHHHhcCccchHH----------
Q 040319 391 MFYRWPTD-RDDSIIWTSMICGYARSGKPEHAILLFHQS---QSEATVVPDEIALTSVLGVCGTLGFHEM---------- 456 (812)
Q Consensus 391 ~f~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~~g~~p~~~t~~~ll~a~~~~~~~~~---------- 456 (812)
.|.....- +.|.+.|--..-.....|+.-+++.+|..- ....|-.|+-.-+.....-....|+.+.
T Consensus 872 af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~s 951 (1238)
T KOG1127|consen 872 AFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISS 951 (1238)
T ss_pred HHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhh
Confidence 99887632 445777877666667778888888888661 1113344443333333333333443322
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHhhhcCCHHHHHHHHccCCC-----CChhHHHHHH----HHHHhcCChHHHHHHH
Q 040319 457 GKQIHSYALKTGFSSDLGVANSMVSMYFKCCNMSNAIKAFNKMPS-----HDIVSWNGLI----AGHLLHRQGDEALAVW 527 (812)
Q Consensus 457 a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~-----~~~~~~~~li----~~~~~~g~~~~A~~l~ 527 (812)
|.-..++... +.+.+...|.+.....-..+..++|.....+... -|...||.+. ..++..|.++.|..-+
T Consensus 952 As~al~~yf~-~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~ 1030 (1238)
T KOG1127|consen 952 ASLALSYYFL-GHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKAS 1030 (1238)
T ss_pred hHHHHHHHHh-cCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhh
Confidence 1112222222 3455666777666666666777777666554321 4555555432 2333445555443332
Q ss_pred HHHHHCCCCCCHHHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCCc-chHHHHHHHHhhcCChHHHHHHHHhCC--
Q 040319 528 SSMEKASIKPDAITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTS-EHYASLVSVLGYWGFLEEAEETINNMP-- 604 (812)
Q Consensus 528 ~~m~~~g~~pd~~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~y~~li~~l~~~g~~~~A~~~~~~m~-- 604 (812)
...-. ..|...-..-++.+ . .|+++++.+.|++.....+-..+. .....+.-..+.++.-+.|..++-+..
T Consensus 1031 ~~~~~---evdEdi~gt~l~lF-f--kndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~~l 1104 (1238)
T KOG1127|consen 1031 WKEWM---EVDEDIRGTDLTLF-F--KNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEVKSL 1104 (1238)
T ss_pred cccch---hHHHHHhhhhHHHH-H--HhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHHHHHh
Confidence 21110 11111111112222 2 577888888888776533333332 234445555667777777776544422
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH---HccCCCCCchHHHHHhhhhhCCCcchHHHHHHHH
Q 040319 605 FQPKVSVWRALLDSCRIRLNTTIGKRVAKHI---LAMEPQDPATYILVSNLYSSSGRWHNSELVREDM 669 (812)
Q Consensus 605 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~---~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 669 (812)
.+|+..+...|-..+.-..+-.....+.+++ +..+--+-..-....-+|...||-.-..+++++.
T Consensus 1105 s~~~~~sll~L~A~~ild~da~~ssaileel~kl~k~e~~~~~~~ll~e~i~~~~~r~~~vk~~~qr~ 1172 (1238)
T KOG1127|consen 1105 SKVQASSLLPLPAVYILDADAHGSSAILEELEKLLKLEWFCWPPGLLKELIYALQGRSVAVKKQIQRA 1172 (1238)
T ss_pred CccchhhHHHHHHHHHHhhhhhhhHHHHHHHHHhhhhHHhccChhHHHHHHHHHhhhhHHHHHHHHHH
Confidence 3445444433333322222222222222222 2111111122334455666666666666666655
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.6e-07 Score=90.49 Aligned_cols=231 Identities=11% Similarity=-0.044 Sum_probs=155.2
Q ss_pred CHhHHHHHHHHhccchhhhhHHHHHhhHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCCceeee-HHHHHH
Q 040319 333 TEFTLTSVVNACGLIMEAKLSEQIHGFVMKFGLGSNDCIEAALLDMLTRCGRMADAEKMFYRWPTDRDDSIIW-TSMICG 411 (812)
Q Consensus 333 ~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~-~~li~~ 411 (812)
|-..-..+-+++.+.|.+..|+..+...++.-. -+.+|--|-..|.+..++..|..+|.+-....|..+|| .-+...
T Consensus 222 dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~--~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi 299 (478)
T KOG1129|consen 222 DWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFP--HPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARI 299 (478)
T ss_pred hHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCC--chhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHH
Confidence 444456777888999999999999888777654 44566678889999999999999998876455545554 445667
Q ss_pred HHHcCChhhHHHHHHHhcccCCCCCCh-hhHHHHHHHhcCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHhhhcCCHH
Q 040319 412 YARSGKPEHAILLFHQSQSEATVVPDE-IALTSVLGVCGTLGFHEMGKQIHSYALKTGFSSDLGVANSMVSMYFKCCNMS 490 (812)
Q Consensus 412 ~~~~g~~~~A~~~~~~m~~~~g~~p~~-~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~ 490 (812)
+-..++.++|+++|+...+ ..|+. ....++...+--.++++.|..++.++...|..
T Consensus 300 ~eam~~~~~a~~lYk~vlk---~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-------------------- 356 (478)
T KOG1129|consen 300 HEAMEQQEDALQLYKLVLK---LHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-------------------- 356 (478)
T ss_pred HHHHHhHHHHHHHHHHHHh---cCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC--------------------
Confidence 7788999999999998876 33433 34444445555566677777777777766643
Q ss_pred HHHHHHccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHhcCCCCchHHHHHHHHHHhh
Q 040319 491 NAIKAFNKMPSHDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDA--ITFVLIISAYRYTNLNLVDSCRKLFLSMK 568 (812)
Q Consensus 491 ~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~--~t~~~ll~a~~~~~~g~~~~a~~~~~~m~ 568 (812)
+...|+.+.-+|...++++-++.-|++.+..--.|+. -.|..+-..... .|+...|.+.|+-..
T Consensus 357 ------------speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~--iGD~nlA~rcfrlaL 422 (478)
T KOG1129|consen 357 ------------SPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVT--IGDFNLAKRCFRLAL 422 (478)
T ss_pred ------------ChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEe--ccchHHHHHHHHHHh
Confidence 3344445555555566666666666666655444554 234444444444 788888888887665
Q ss_pred hhcCccCCcchHHHHHHHHhhcCChHHHHHHHHhCC
Q 040319 569 TIYNIEPTSEHYASLVSVLGYWGFLEEAEETINNMP 604 (812)
Q Consensus 569 ~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~ 604 (812)
. .-....+.++.|.-+-.|.|++++|..+++...
T Consensus 423 ~--~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~ 456 (478)
T KOG1129|consen 423 T--SDAQHGEALNNLAVLAARSGDILGARSLLNAAK 456 (478)
T ss_pred c--cCcchHHHHHhHHHHHhhcCchHHHHHHHHHhh
Confidence 4 112235667777777777888888887777644
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.60 E-value=0.0018 Score=70.69 Aligned_cols=218 Identities=11% Similarity=0.064 Sum_probs=107.5
Q ss_pred cCCchHHHHHHHHHHHhccCCCccchHHHHHHHHccCChhhHHHHHhcCCC-----------CChhhHHHHHHH-HHhcC
Q 040319 11 CGEVSLAKAIHASLIKLLLEQDTRFGNPLISAYLKLGHVADAYKIFYGLSS-----------PNVVSFTSLISG-LAKLG 78 (812)
Q Consensus 11 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~-----------~~~~~~~~li~~-~~~~g 78 (812)
-|+.+.|.+-...+. +..+|..+.+++.+..+++-|.-.+..|.+ .|..--.+-+.+ -.+.|
T Consensus 741 iG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLAieLg 814 (1416)
T KOG3617|consen 741 IGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLAIELG 814 (1416)
T ss_pred eccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHHHHHh
Confidence 355555554433332 334666677777777666666666655542 010001111111 13445
Q ss_pred ChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHhhhcCCCHHHHHHHH
Q 040319 79 REEEAIELFFRMRSEGIVPNEHSFVAILTACIRLLELELGFQIHALIVKMGCVDSVFVTNALMGLYGKFSFCLDYLLKLF 158 (812)
Q Consensus 79 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~~a~~~f 158 (812)
..++|+.+|.+-.+ |..+=+.+-..|.+++|.++-+.=-+..+..+-+-| ..-+...+ +.+.|.+.|
T Consensus 815 MlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~y---A~~Lear~-Di~~Aleyy 881 (1416)
T KOG3617|consen 815 MLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNY---AKYLEARR-DIEAALEYY 881 (1416)
T ss_pred hHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhccceehhhhHHHH---HHHHHhhc-cHHHHHHHH
Confidence 66666666665443 222223344456666665554332222211111111 11111223 444444444
Q ss_pred hcCCC-----------------------CCcchHHHHHHHHHcCCChhHHHHHHHHhHhcCCCCCCcchHHHHHHHHhcC
Q 040319 159 DELPH-----------------------KDTVSWNTVISSVVNEFEYEKAFELFRDMKRDNGFTVDYFTISTLLTACTGC 215 (812)
Q Consensus 159 ~~~~~-----------------------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~ 215 (812)
++... +|...|.---..+-..|+.+.|+.+|... +. |-++++..+-.
T Consensus 882 EK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A-~D---------~fs~VrI~C~q 951 (1416)
T KOG3617|consen 882 EKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSA-KD---------YFSMVRIKCIQ 951 (1416)
T ss_pred HhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHh-hh---------hhhheeeEeec
Confidence 43321 23333333334444566777777777665 32 45556666666
Q ss_pred CChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcC
Q 040319 216 FVLMEGRAVHAHAIRIGLGANLSVNNALIGFYTKCGRVKDVVALLERM 263 (812)
Q Consensus 216 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~ 263 (812)
|+.++|-++-++ .-|....-.|.++|-..|++.+|...|.+.
T Consensus 952 Gk~~kAa~iA~e------sgd~AAcYhlaR~YEn~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 952 GKTDKAARIAEE------SGDKAACYHLARMYENDGDVVKAVKFFTRA 993 (1416)
T ss_pred cCchHHHHHHHh------cccHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 777777666543 234455556777777777777777777655
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.57 E-value=6.2e-05 Score=75.44 Aligned_cols=382 Identities=12% Similarity=0.070 Sum_probs=168.9
Q ss_pred HHHHHHHHHhhCChhHHHHHhccCCCCCcccH-HHHHHHHHhCC-ChHHHHHHHHHHHHcCCCCCHhHHHHHHHHhccch
Q 040319 271 LTEIIIAYMEFGYVDLAVEIFDKMPEKNSVSY-NALLAGYCKNG-KAMEALGLFVKLLEEGLVLTEFTLTSVVNACGLIM 348 (812)
Q Consensus 271 ~~~li~~~~~~g~~~~A~~~f~~m~~~d~~~~-~~li~~~~~~g-~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~ 348 (812)
-.-++.+|...++-+.|.....+.+..-...- |.|+.-+.+.| +-.++.--+.+.+..-+- .+. .|.+..+.
T Consensus 100 ~r~~aecy~~~~n~~~Ai~~l~~~p~t~r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp~----aL~-~i~~ll~l- 173 (564)
T KOG1174|consen 100 RRRAAECYRQIGNTDMAIETLLQVPPTLRSPRINLMLARLQHHGSRHKEAVLAYKEVIRECPM----ALQ-VIEALLEL- 173 (564)
T ss_pred HHHHHHHHHHHccchHHHHHHhcCCccccchhHHHHHHHHHhccccccHHHHhhhHHHHhcch----HHH-HHHHHHHH-
Confidence 34488899999999999999999887444333 44444333333 222222222222221100 000 00000000
Q ss_pred hhhhHHHHHhhHHHhcCCCchhHHHHHHHHHHhc--CCHHHHHHHHhcC---CCCCCceeeeHHHHHHHHHcCChhhHHH
Q 040319 349 EAKLSEQIHGFVMKFGLGSNDCIEAALLDMLTRC--GRMADAEKMFYRW---PTDRDDSIIWTSMICGYARSGKPEHAIL 423 (812)
Q Consensus 349 ~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~--g~~~~A~~~f~~~---~~~~~~~~~~~~li~~~~~~g~~~~A~~ 423 (812)
.+.....--..|-+..+.|+.......+.+|+.+ ++-..|...|-.+ ..-++|+....++...+...|+.++|+.
T Consensus 174 ~v~g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~ 253 (564)
T KOG1174|consen 174 GVNGNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAED 253 (564)
T ss_pred hhcchhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHH
Confidence 0000001111112222334334444445555543 3333333333221 1124556667777777777777777777
Q ss_pred HHHHhcccCCCCCChhhHHHH-HHHhcCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHhhhcCCHHHHHHHHccCCCC
Q 040319 424 LFHQSQSEATVVPDEIALTSV-LGVCGTLGFHEMGKQIHSYALKTGFSSDLGVANSMVSMYFKCCNMSNAIKAFNKMPSH 502 (812)
Q Consensus 424 ~~~~m~~~~g~~p~~~t~~~l-l~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~ 502 (812)
.|++.+. +.|+.++-.-+ --.+...|+.+....+...+.... +-+...|-.-........+++.|+.+-++..+.
T Consensus 254 ~Fe~~~~---~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~ 329 (564)
T KOG1174|consen 254 IFSSTLC---ANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDS 329 (564)
T ss_pred HHHHHhh---CChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhcc
Confidence 7777665 55554431111 111233444444444433333211 001111111112222334455555555444432
Q ss_pred C---hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCCcc
Q 040319 503 D---IVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDA-ITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTSE 578 (812)
Q Consensus 503 ~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~ 578 (812)
| +..+-.-...+.+.|++++|.-.|+..+. +.|.. ..|..|+..|.. .|...+|.-.-+...+- +..+..
T Consensus 330 ~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~--Lap~rL~~Y~GL~hsYLA--~~~~kEA~~~An~~~~~--~~~sA~ 403 (564)
T KOG1174|consen 330 EPRNHEALILKGRLLIALERHTQAVIAFRTAQM--LAPYRLEIYRGLFHSYLA--QKRFKEANALANWTIRL--FQNSAR 403 (564)
T ss_pred CcccchHHHhccHHHHhccchHHHHHHHHHHHh--cchhhHHHHHHHHHHHHh--hchHHHHHHHHHHHHHH--hhcchh
Confidence 2 22222222344555555555555555555 44433 555555555555 55555555444333221 112222
Q ss_pred hHHHHH-HHHhhcC-ChHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhh
Q 040319 579 HYASLV-SVLGYWG-FLEEAEETINNMP-FQPK-VSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYS 654 (812)
Q Consensus 579 ~y~~li-~~l~~~g-~~~~A~~~~~~m~-~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~ 654 (812)
+.+-+. +.+.-.- --++|..++++.. ++|+ ....+.+...|...|..+.+...+++.+...|+ ...++.|++++.
T Consensus 404 ~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D-~~LH~~Lgd~~~ 482 (564)
T KOG1174|consen 404 SLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPD-VNLHNHLGDIMR 482 (564)
T ss_pred hhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccc-cHHHHHHHHHHH
Confidence 222221 1111111 1244555555532 4554 233344444455555555555555555555554 344555555555
Q ss_pred hCCCcchHHHHHHHH
Q 040319 655 SSGRWHNSELVREDM 669 (812)
Q Consensus 655 ~~g~~~~a~~~~~~m 669 (812)
..+.+.+|.+.+...
T Consensus 483 A~Ne~Q~am~~y~~A 497 (564)
T KOG1174|consen 483 AQNEPQKAMEYYYKA 497 (564)
T ss_pred HhhhHHHHHHHHHHH
Confidence 555555555555543
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.5e-06 Score=87.98 Aligned_cols=248 Identities=13% Similarity=0.040 Sum_probs=131.5
Q ss_pred HHhcCCHHHHHHHHhcCCCCCC--ceeeeHHHHHHHHHcCChhhHHHHHHHhcccCCCCCChhhHHHHHHHhcCccchHH
Q 040319 379 LTRCGRMADAEKMFYRWPTDRD--DSIIWTSMICGYARSGKPEHAILLFHQSQSEATVVPDEIALTSVLGVCGTLGFHEM 456 (812)
Q Consensus 379 y~~~g~~~~A~~~f~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~a~~~~~~~~~ 456 (812)
+.-.|++..+..-.+ .....+ +.....-+..+|...|+++.++. ++.. +-.|.......+...+.....-+.
T Consensus 11 ~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~---ei~~--~~~~~l~av~~la~y~~~~~~~e~ 84 (290)
T PF04733_consen 11 QFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLS---EIKK--SSSPELQAVRLLAEYLSSPSDKES 84 (290)
T ss_dssp HHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHH---HS-T--TSSCCCHHHHHHHHHHCTSTTHHC
T ss_pred HHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHH---Hhcc--CCChhHHHHHHHHHHHhCccchHH
Confidence 444577777775444 210111 12234445667777777665443 3332 225555554444444443233333
Q ss_pred HHHHHHHHHHhCCC-CchhHHHHHHHHhhhcCCHHHHHHHHccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 040319 457 GKQIHSYALKTGFS-SDLGVANSMVSMYFKCCNMSNAIKAFNKMPSHDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASI 535 (812)
Q Consensus 457 a~~~~~~~~~~g~~-~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 535 (812)
+..-+......... .+..+......+|...|++++|+++++.. .+.......+..|.+.++++.|.+.++.|.+ +
T Consensus 85 ~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~--~ 160 (290)
T PF04733_consen 85 ALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQ--I 160 (290)
T ss_dssp HHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC--C
T ss_pred HHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh--c
Confidence 32222221111211 23333334445566677777777776654 3444445556666777777777777777766 3
Q ss_pred CCCHHHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCCcchHHHHHHHHhhcCChHHHHHHHHhCC--CCCCHHHHH
Q 040319 536 KPDAITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLEEAEETINNMP--FQPKVSVWR 613 (812)
Q Consensus 536 ~pd~~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~--~~p~~~~~~ 613 (812)
..|.. ...+..++ +.+..-.+.+.+|.-+|+++. ..+++.+.+
T Consensus 161 ~eD~~-l~qLa~aw----------------------------------v~l~~g~e~~~~A~y~f~El~~~~~~t~~~ln 205 (290)
T PF04733_consen 161 DEDSI-LTQLAEAW----------------------------------VNLATGGEKYQDAFYIFEELSDKFGSTPKLLN 205 (290)
T ss_dssp SCCHH-HHHHHHHH----------------------------------HHHHHTTTCCCHHHHHHHHHHCCS--SHHHHH
T ss_pred CCcHH-HHHHHHHH----------------------------------HHHHhCchhHHHHHHHHHHHHhccCCCHHHHH
Confidence 34432 22222222 222222234555655555543 345666667
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCCc-chHHHHHHHHHh
Q 040319 614 ALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRW-HNSELVREDMRE 671 (812)
Q Consensus 614 ~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~-~~a~~~~~~m~~ 671 (812)
.+..++...|++++|+..++++++.+|+++.+...++-+..-.|+. +.+.+.+.+++.
T Consensus 206 g~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 206 GLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 7777777778888888888888888888888888888888888887 556677777654
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.1e-05 Score=87.67 Aligned_cols=261 Identities=11% Similarity=0.073 Sum_probs=151.3
Q ss_pred HHHHhcCCHHHHHHHHhcCCCCCCceee-eHHHHHHHHHcCChhhHHHHHHHhcccCCCCCChhhHHHHHHHhcCccchH
Q 040319 377 DMLTRCGRMADAEKMFYRWPTDRDDSII-WTSMICGYARSGKPEHAILLFHQSQSEATVVPDEIALTSVLGVCGTLGFHE 455 (812)
Q Consensus 377 ~~y~~~g~~~~A~~~f~~~~~~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~a~~~~~~~~ 455 (812)
..+...|++++|++.++.-...-.|..+ .......+.+.|+.++|..+|+.+.. ..|+...|-..+..|.....
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~---rNPdn~~Yy~~L~~~~g~~~-- 86 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELID---RNPDNYDYYRGLEEALGLQL-- 86 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---HCCCcHHHHHHHHHHHhhhc--
Confidence 3445667777777776654422222333 33344566666777777777777665 45666655444433321000
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHhhhcCCHHHHHHHHccCCC--CChhHHHHHHHHHHhcCCh-HHHHHHHHHHHH
Q 040319 456 MGKQIHSYALKTGFSSDLGVANSMVSMYFKCCNMSNAIKAFNKMPS--HDIVSWNGLIAGHLLHRQG-DEALAVWSSMEK 532 (812)
Q Consensus 456 ~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~-~~A~~l~~~m~~ 532 (812)
++ ...+.+....+++++.. |.......+.-.+.....+ ..+...+..++.
T Consensus 87 ------------~~---------------~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~ 139 (517)
T PF12569_consen 87 ------------QL---------------SDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLR 139 (517)
T ss_pred ------------cc---------------ccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHh
Confidence 00 00122333333333322 1111111111111111122 244555666777
Q ss_pred CCCCCCHHHHHHHHHHhcCCCCchHHHHHHHHHHhhhhc-------------CccCCc--chHHHHHHHHhhcCChHHHH
Q 040319 533 ASIKPDAITFVLIISAYRYTNLNLVDSCRKLFLSMKTIY-------------NIEPTS--EHYASLVSVLGYWGFLEEAE 597 (812)
Q Consensus 533 ~g~~pd~~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~-------------~~~p~~--~~y~~li~~l~~~g~~~~A~ 597 (812)
.|++| +|..|-.-|.. ....+-..+++....... .-.|+. .++.-+...|.+.|++++|+
T Consensus 140 KgvPs---lF~~lk~Ly~d--~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al 214 (517)
T PF12569_consen 140 KGVPS---LFSNLKPLYKD--PEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKAL 214 (517)
T ss_pred cCCch---HHHHHHHHHcC--hhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHH
Confidence 77654 34444444444 444444444444332210 112333 24456678888999999999
Q ss_pred HHHHhCC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCCcchHHHHHHHHHhCCC
Q 040319 598 ETINNMP-FQPK-VSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWHNSELVREDMREKGF 674 (812)
Q Consensus 598 ~~~~~m~-~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~ 674 (812)
+++++.. ..|. +-.|..-...+.+.|++++|...++.+.++++.|--...-.+..+.++|+.++|.++.......+.
T Consensus 215 ~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~ 293 (517)
T PF12569_consen 215 EYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDV 293 (517)
T ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCC
Confidence 9999754 6675 446666667788999999999999999999999888888889999999999999999988865554
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.55 E-value=6.6e-06 Score=76.16 Aligned_cols=189 Identities=10% Similarity=-0.023 Sum_probs=124.2
Q ss_pred HHHHHhhhcCCHHHHHHHHccCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcCCC
Q 040319 478 SMVSMYFKCCNMSNAIKAFNKMPS---HDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDA-ITFVLIISAYRYTN 553 (812)
Q Consensus 478 ~Li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~~ 553 (812)
.|.-.|...|+...|..-+++..+ .+..+|..+...|.+.|+.+.|.+-|++.++ +.|+. ...|..-.-++.
T Consensus 40 qLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls--l~p~~GdVLNNYG~FLC~-- 115 (250)
T COG3063 40 QLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALS--LAPNNGDVLNNYGAFLCA-- 115 (250)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHh--cCCCccchhhhhhHHHHh--
Confidence 355567777777777777776655 2345677777777777777777777777777 66665 333444443444
Q ss_pred CchHHHHHHHHHHhhhhcCccCCcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHH
Q 040319 554 LNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLEEAEETINNMP-FQP-KVSVWRALLDSCRIRLNTTIGKRV 631 (812)
Q Consensus 554 ~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~ 631 (812)
.|.+++|...|+....+....--..+|..++-+-.++|+.+.|.+.+++.. ..| .......+.......|+.-.|...
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~ 195 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLY 195 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHH
Confidence 567777777777776643333346677777777777777777777777644 444 345556666666677777777777
Q ss_pred HHHHHccCCCCCchHHHHHhhhhhCCCcchHHHHHHHHH
Q 040319 632 AKHILAMEPQDPATYILVSNLYSSSGRWHNSELVREDMR 670 (812)
Q Consensus 632 ~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 670 (812)
+++...-.+-......+.+.+-...|+-+.|.+.-..+.
T Consensus 196 ~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~ 234 (250)
T COG3063 196 LERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQ 234 (250)
T ss_pred HHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 777766665556666666677777777777766655553
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.53 E-value=5.4e-05 Score=81.94 Aligned_cols=404 Identities=12% Similarity=0.075 Sum_probs=230.8
Q ss_pred CchHHHHHHHH--HhhhcCCCHHHHHHHHhcCCCCCcchHHHHHHHHHcCCChhHHHHHHHHhHhcCC--------CCCC
Q 040319 132 DSVFVTNALMG--LYGKFSFCLDYLLKLFDELPHKDTVSWNTVISSVVNEFEYEKAFELFRDMKRDNG--------FTVD 201 (812)
Q Consensus 132 ~~~~~~~~li~--~y~~~g~~~~~a~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g--------~~pd 201 (812)
-|..+-.++++ .|.-.| +++.|.+-.+.+. +...|..|.+.+++..+++-|.-.+-.|....| -.|+
T Consensus 724 Cd~~TRkaml~FSfyvtiG-~MD~AfksI~~Ik--S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~ 800 (1416)
T KOG3617|consen 724 CDESTRKAMLDFSFYVTIG-SMDAAFKSIQFIK--SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE 800 (1416)
T ss_pred cCHHHHHhhhceeEEEEec-cHHHHHHHHHHHh--hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc
Confidence 35666666664 577889 9999888777665 456799999999999999998888877732222 1232
Q ss_pred cchHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCC-cchhHHHHHHHHHh
Q 040319 202 YFTISTLLTACTGCFVLMEGRAVHAHAIRIGLGANLSVNNALIGFYTKCGRVKDVVALLERMPVM-DIITLTEIIIAYME 280 (812)
Q Consensus 202 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~-~~~~~~~li~~~~~ 280 (812)
.+=.-+.-.....|.+++|+.++.+..+. ..|=..|-..|.+++|.++-+.-..- =..||..-..-+-.
T Consensus 801 -e~eakvAvLAieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lea 870 (1416)
T KOG3617|consen 801 -EDEAKVAVLAIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEA 870 (1416)
T ss_pred -chhhHHHHHHHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHh
Confidence 22222222345678888888888888763 23445677788899888876544322 22566666777777
Q ss_pred hCChhHHHHHhccCCCCCcccHHHHHHHHHhCCChHHHHH-HHHHHHHcCCCCCHhHHHHHHHHhccchhhhhHHHHHhh
Q 040319 281 FGYVDLAVEIFDKMPEKNSVSYNALLAGYCKNGKAMEALG-LFVKLLEEGLVLTEFTLTSVVNACGLIMEAKLSEQIHGF 359 (812)
Q Consensus 281 ~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~-l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~ 359 (812)
.++++.|++.|++...+--.....|. +...+++ +.+.+. |...|.---.-.-+.|+.+.|..++..
T Consensus 871 r~Di~~AleyyEK~~~hafev~rmL~-------e~p~~~e~Yv~~~~------d~~L~~WWgqYlES~GemdaAl~~Y~~ 937 (1416)
T KOG3617|consen 871 RRDIEAALEYYEKAGVHAFEVFRMLK-------EYPKQIEQYVRRKR------DESLYSWWGQYLESVGEMDAALSFYSS 937 (1416)
T ss_pred hccHHHHHHHHHhcCChHHHHHHHHH-------hChHHHHHHHHhcc------chHHHHHHHHHHhcccchHHHHHHHHH
Confidence 88888888888876432111111111 1111111 111111 222222222333455666666666665
Q ss_pred HHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCCceeeeHHHHHHHHHcCChhhHHHHHHHhcccCCCCCChh
Q 040319 360 VMKFGLGSNDCIEAALLDMLTRCGRMADAEKMFYRWPTDRDDSIIWTSMICGYARSGKPEHAILLFHQSQSEATVVPDEI 439 (812)
Q Consensus 360 ~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~ 439 (812)
+.. |-+++...+-.|+.++|-++-++-. |......+...|-..|++.+|+..|.+.+.
T Consensus 938 A~D---------~fs~VrI~C~qGk~~kAa~iA~esg----d~AAcYhlaR~YEn~g~v~~Av~FfTrAqa--------- 995 (1416)
T KOG3617|consen 938 AKD---------YFSMVRIKCIQGKTDKAARIAEESG----DKAACYHLARMYENDGDVVKAVKFFTRAQA--------- 995 (1416)
T ss_pred hhh---------hhhheeeEeeccCchHHHHHHHhcc----cHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---------
Confidence 543 2345555566677777777765533 244555667777777888888877766543
Q ss_pred hHHHHHHHhcCccc---------------hHHHHHHHHHHHHhCCCCchhHHHHHHHHhhhcCCHHHHHHHHccCCC---
Q 040319 440 ALTSVLGVCGTLGF---------------HEMGKQIHSYALKTGFSSDLGVANSMVSMYFKCCNMSNAIKAFNKMPS--- 501 (812)
Q Consensus 440 t~~~ll~a~~~~~~---------------~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~--- 501 (812)
|...|+.|...+- .-.|-.+++ +.|.. ..--+-.|-|.|.+.+|+++-=+-.+
T Consensus 996 -fsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyE---e~g~~-----~~~AVmLYHkAGm~~kALelAF~tqQf~a 1066 (1416)
T KOG3617|consen 996 -FSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYE---ELGGY-----AHKAVMLYHKAGMIGKALELAFRTQQFSA 1066 (1416)
T ss_pred -HHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHH---Hcchh-----hhHHHHHHHhhcchHHHHHHHHhhcccHH
Confidence 4444444433221 111112221 11111 11234567788888887765322111
Q ss_pred -----------CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCchHHHHHHHHHHhhhh
Q 040319 502 -----------HDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDAITFVLIISAYRYTNLNLVDSCRKLFLSMKTI 570 (812)
Q Consensus 502 -----------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~ 570 (812)
.|+...+--..-++.+.++++|..++-..++ |...+.-|.. . .+.-..++-+.|.-.
T Consensus 1067 L~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~---------~~~AlqlC~~--~-nv~vtee~aE~mTp~ 1134 (1416)
T KOG3617|consen 1067 LDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLARE---------FSGALQLCKN--R-NVRVTEEFAELMTPT 1134 (1416)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHH---------HHHHHHHHhc--C-CCchhHHHHHhcCcC
Confidence 4455555556666778888888887766554 4445555544 2 233333333344321
Q ss_pred cCccCC----cchHHHHHHHHhhcCChHHHHHHHHhCC
Q 040319 571 YNIEPT----SEHYASLVSVLGYWGFLEEAEETINNMP 604 (812)
Q Consensus 571 ~~~~p~----~~~y~~li~~l~~~g~~~~A~~~~~~m~ 604 (812)
..-.|+ ......+.+++.++|.+.-|-+-|.+..
T Consensus 1135 Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAG 1172 (1416)
T KOG3617|consen 1135 KDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQAG 1172 (1416)
T ss_pred cCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhhh
Confidence 112222 3456677888888888888777776543
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.53 E-value=0.00016 Score=76.84 Aligned_cols=96 Identities=14% Similarity=0.051 Sum_probs=59.9
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHhCC-CCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhC
Q 040319 579 HYASLVSVLGYWGFLEEAEETINNMP-FQPKVS-VWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSS 656 (812)
Q Consensus 579 ~y~~li~~l~~~g~~~~A~~~~~~m~-~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~ 656 (812)
++-.++..+-+.|+++.|+..++..- -.|..+ .|..=...+...|+++.|-..++.+.++|-.|......-++-..++
T Consensus 373 t~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrA 452 (700)
T KOG1156|consen 373 TLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRA 452 (700)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHc
Confidence 34456666777777777777777643 344433 2222223456667777777777777777765555444566666677
Q ss_pred CCcchHHHHHHHHHhCCC
Q 040319 657 GRWHNSELVREDMREKGF 674 (812)
Q Consensus 657 g~~~~a~~~~~~m~~~g~ 674 (812)
.+.++|.++..+....|.
T Consensus 453 n~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 453 NEIEEAEEVLSKFTREGF 470 (700)
T ss_pred cccHHHHHHHHHhhhccc
Confidence 777777777776655543
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.49 E-value=2e-06 Score=89.83 Aligned_cols=213 Identities=12% Similarity=0.080 Sum_probs=152.8
Q ss_pred cchHHHHHHHHHHHHhCCCCchhHHHHHHHHhhhcCCHHHHHHHHccCCC---CChhHHHHHHHHHHhcCChHHHHHHHH
Q 040319 452 GFHEMGKQIHSYALKTGFSSDLGVANSMVSMYFKCCNMSNAIKAFNKMPS---HDIVSWNGLIAGHLLHRQGDEALAVWS 528 (812)
Q Consensus 452 ~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~ 528 (812)
|++..|.-.++..++.. +-+...|--|.-.-+..++=..|...+.+..+ .|....-+|...|...|.-.+|+..++
T Consensus 299 G~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L~ 377 (579)
T KOG1125|consen 299 GDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKMLD 377 (579)
T ss_pred CCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 33444444444444432 22445555555555555555566666655544 445666667777888888888888887
Q ss_pred HHHHCCCCCCHHHHHHH------H--HHhcCCCCchHHHHHHHHHHhhhhcCccCCcchHHHHHHHHhhcCChHHHHHHH
Q 040319 529 SMEKASIKPDAITFVLI------I--SAYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLEEAEETI 600 (812)
Q Consensus 529 ~m~~~g~~pd~~t~~~l------l--~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~ 600 (812)
.=+. .+|..+-...- . ..+.+ ........++|-.+....+.++|++.+.+|.-+|--.|.+++|.+-|
T Consensus 378 ~Wi~--~~p~y~~l~~a~~~~~~~~~~s~~~--~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf 453 (579)
T KOG1125|consen 378 KWIR--NKPKYVHLVSAGENEDFENTKSFLD--SSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCF 453 (579)
T ss_pred HHHH--hCccchhccccCccccccCCcCCCC--HHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHH
Confidence 7665 22221110000 0 11222 34455666777777666777789999999999999999999999999
Q ss_pred HhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCCcchHHHHHHHH
Q 040319 601 NNMP-FQP-KVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWHNSELVREDM 669 (812)
Q Consensus 601 ~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 669 (812)
+... .+| |..+|+-|........+-++|..+|.+++++.|.-..+...|+-.|...|.++||.+.+-..
T Consensus 454 ~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~A 524 (579)
T KOG1125|consen 454 EAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEA 524 (579)
T ss_pred HHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHH
Confidence 9965 788 68899999999999999999999999999999999999999999999999999999887655
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.47 E-value=3.9e-05 Score=83.53 Aligned_cols=149 Identities=12% Similarity=0.039 Sum_probs=91.2
Q ss_pred HHhccchhhhhHHHHHhhHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCCceee-eHHHHHHHHHc-----
Q 040319 342 NACGLIMEAKLSEQIHGFVMKFGLGSNDCIEAALLDMLTRCGRMADAEKMFYRWPTDRDDSII-WTSMICGYARS----- 415 (812)
Q Consensus 342 ~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~-~~~li~~~~~~----- 415 (812)
..+...|+.+.|.+.+..-.+ -+.....+.......|.+.|+.++|..++..+....|+-.. |..+..+....
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~-~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~ 90 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEK-QILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSD 90 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhh-hCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhccccc
Confidence 344677999999988865333 33445667778889999999999999999998744444444 44455554222
Q ss_pred CChhhHHHHHHHhcccCCCCCChhhHHHHHHHhcC-ccchHHHHHHHHHHHHhCCCCchhHHHHHHHHhhhcCCHHHHHH
Q 040319 416 GKPEHAILLFHQSQSEATVVPDEIALTSVLGVCGT-LGFHEMGKQIHSYALKTGFSSDLGVANSMVSMYFKCCNMSNAIK 494 (812)
Q Consensus 416 g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~a~~~-~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~ 494 (812)
...+...++|+++.. .-|.......+.-.+.. ..--..+..+.....+.|+++ +++.|-..|....+.+-..+
T Consensus 91 ~~~~~~~~~y~~l~~---~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~ 164 (517)
T PF12569_consen 91 EDVEKLLELYDELAE---KYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIES 164 (517)
T ss_pred ccHHHHHHHHHHHHH---hCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHH
Confidence 246677888888876 33555444433322222 222345556666667777653 55566666665544444444
Q ss_pred HHc
Q 040319 495 AFN 497 (812)
Q Consensus 495 ~f~ 497 (812)
++.
T Consensus 165 l~~ 167 (517)
T PF12569_consen 165 LVE 167 (517)
T ss_pred HHH
Confidence 433
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.43 E-value=1e-05 Score=80.56 Aligned_cols=181 Identities=11% Similarity=0.003 Sum_probs=117.5
Q ss_pred chhHHHHHHHHhhhcCCHHHHHHHHccCCC--CC-h---hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH----H
Q 040319 472 DLGVANSMVSMYFKCCNMSNAIKAFNKMPS--HD-I---VSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDAI----T 541 (812)
Q Consensus 472 ~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~--~~-~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~----t 541 (812)
....+-.+...|.+.|++++|...|+++.. |+ . ..|..+...|...|++++|+..++++.+ ..|+.. +
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~--~~p~~~~~~~a 109 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIR--LHPNHPDADYA 109 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--HCcCCCchHHH
Confidence 455566677777788888888888876654 32 1 3566777778888888888888888877 555432 3
Q ss_pred HHHHHHHhcCC------CCchHHHHHHHHHHhhhhcCccCCcc-hHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHH
Q 040319 542 FVLIISAYRYT------NLNLVDSCRKLFLSMKTIYNIEPTSE-HYASLVSVLGYWGFLEEAEETINNMPFQPKVSVWRA 614 (812)
Q Consensus 542 ~~~ll~a~~~~------~~g~~~~a~~~~~~m~~~~~~~p~~~-~y~~li~~l~~~g~~~~A~~~~~~m~~~p~~~~~~~ 614 (812)
+..+..++... ..|+.++|.+.|+.+.+. .|+.. .+..+... +...... ......
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~----~~~~~~~-----------~~~~~~ 171 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRM----DYLRNRL-----------AGKELY 171 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHH----HHHHHHH-----------HHHHHH
Confidence 33333344330 016677777777777652 34322 12111111 1111100 001124
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHccCCCC---CchHHHHHhhhhhCCCcchHHHHHHHHHhC
Q 040319 615 LLDSCRIRLNTTIGKRVAKHILAMEPQD---PATYILVSNLYSSSGRWHNSELVREDMREK 672 (812)
Q Consensus 615 ll~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 672 (812)
+...+...|+.+.|...++++++..|++ +.++..++.+|.+.|++++|...++.+..+
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4556788899999999999999987765 468899999999999999999999888654
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.43 E-value=2.7e-06 Score=76.80 Aligned_cols=121 Identities=7% Similarity=-0.060 Sum_probs=82.2
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccC-CcchHHHHHHHHhhcCChHHHHHHHHhC
Q 040319 525 AVWSSMEKASIKPDAITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEP-TSEHYASLVSVLGYWGFLEEAEETINNM 603 (812)
Q Consensus 525 ~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~li~~l~~~g~~~~A~~~~~~m 603 (812)
.+|++.++ +.|+. +.....++.. .|++++|...|+.... +.| +...|..+..++.+.|++++|...+++.
T Consensus 14 ~~~~~al~--~~p~~--~~~~g~~~~~--~g~~~~A~~~~~~al~---~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~A 84 (144)
T PRK15359 14 DILKQLLS--VDPET--VYASGYASWQ--EGDYSRAVIDFSWLVM---AQPWSWRAHIALAGTWMMLKEYTTAINFYGHA 84 (144)
T ss_pred HHHHHHHH--cCHHH--HHHHHHHHHH--cCCHHHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 45556655 55664 2233344455 7777777777777664 334 3666777777777777777777777775
Q ss_pred C-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhh
Q 040319 604 P-FQP-KVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYS 654 (812)
Q Consensus 604 ~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~ 654 (812)
. ..| +...|..+..++...|+.++|...+++++++.|+++..+...+++..
T Consensus 85 l~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 85 LMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQI 137 (144)
T ss_pred HhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 4 445 56677777777777888888888888888888888877777666543
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.42 E-value=3e-07 Score=58.87 Aligned_cols=33 Identities=27% Similarity=0.335 Sum_probs=26.4
Q ss_pred CccCCcchHHHHHHHHhhcCChHHHHHHHHhCC
Q 040319 572 NIEPTSEHYASLVSVLGYWGFLEEAEETINNMP 604 (812)
Q Consensus 572 ~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~ 604 (812)
|+.||..+|++||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 677888888888888888888888888888774
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.41 E-value=0.00011 Score=78.51 Aligned_cols=294 Identities=10% Similarity=-0.032 Sum_probs=161.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCCC-CCceee---eHHHHHHHHHcCChhhHHHHHHHhcccCCCCCChh-hHHH---H
Q 040319 373 AALLDMLTRCGRMADAEKMFYRWPTD-RDDSII---WTSMICGYARSGKPEHAILLFHQSQSEATVVPDEI-ALTS---V 444 (812)
Q Consensus 373 ~~Li~~y~~~g~~~~A~~~f~~~~~~-~~~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~-t~~~---l 444 (812)
..+...|...|+.+++.+.+...... +.+... .......+...|++++|...+++... ..|+.. .+.. .
T Consensus 10 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~---~~P~~~~a~~~~~~~ 86 (355)
T cd05804 10 AAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLD---DYPRDLLALKLHLGA 86 (355)
T ss_pred HHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---HCCCcHHHHHHhHHH
Confidence 33444455556666655554443211 111111 11223345667888888888888776 344443 2221 1
Q ss_pred HHHhcCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHhhhcCCHHHHHHHHccCCC---CChhHHHHHHHHHHhcCChH
Q 040319 445 LGVCGTLGFHEMGKQIHSYALKTGFSSDLGVANSMVSMYFKCCNMSNAIKAFNKMPS---HDIVSWNGLIAGHLLHRQGD 521 (812)
Q Consensus 445 l~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~ 521 (812)
.......+..+.+.+.... .....+........+...+...|++++|...+++..+ .+...+..+...|...|+++
T Consensus 87 ~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~ 165 (355)
T cd05804 87 FGLGDFSGMRDHVARVLPL-WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFK 165 (355)
T ss_pred HHhcccccCchhHHHHHhc-cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHH
Confidence 1111223444444444433 1111122334445566778888888888888887654 44567777888888888888
Q ss_pred HHHHHHHHHHHCCC-CCCHH--HHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCCcchH-H--HHHHHHhhcCChHH
Q 040319 522 EALAVWSSMEKASI-KPDAI--TFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHY-A--SLVSVLGYWGFLEE 595 (812)
Q Consensus 522 ~A~~l~~~m~~~g~-~pd~~--t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y-~--~li~~l~~~g~~~~ 595 (812)
+|+..+++.....- .|+.. .+..+...+.. .|++++|..+++.........+..... + .+..-+...|..+.
T Consensus 166 eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~--~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~ 243 (355)
T cd05804 166 EGIAFMESWRDTWDCSSMLRGHNWWHLALFYLE--RGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDV 243 (355)
T ss_pred HHHHHHHhhhhccCCCcchhHHHHHHHHHHHHH--CCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCCh
Confidence 88888888877321 12322 23345555666 888888888888875311111111111 1 22333334443322
Q ss_pred HHHH---HHhC-CCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccC-C--------CCCchHHHHHhhhhhCCCc
Q 040319 596 AEET---INNM-PFQP---KVSVWRALLDSCRIRLNTTIGKRVAKHILAME-P--------QDPATYILVSNLYSSSGRW 659 (812)
Q Consensus 596 A~~~---~~~m-~~~p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-p--------~~~~~~~~l~~~y~~~g~~ 659 (812)
+... .... +..| ..........++...|+.+.|....+.+.... + .........+.++...|++
T Consensus 244 ~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~ 323 (355)
T cd05804 244 GDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNY 323 (355)
T ss_pred HHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCH
Confidence 2222 1111 1101 12222344555677888888888887775522 1 1345667888899999999
Q ss_pred chHHHHHHHHHhC
Q 040319 660 HNSELVREDMREK 672 (812)
Q Consensus 660 ~~a~~~~~~m~~~ 672 (812)
++|.+.+......
T Consensus 324 ~~A~~~L~~al~~ 336 (355)
T cd05804 324 ATALELLGPVRDD 336 (355)
T ss_pred HHHHHHHHHHHHH
Confidence 9999998877543
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.40 E-value=2.1e-05 Score=79.65 Aligned_cols=49 Identities=14% Similarity=0.112 Sum_probs=29.9
Q ss_pred HHHhcCCHHHHHHHHhcCCCCCCceeeeHHHHHHHHHcCChhhHHHHHHHhcc
Q 040319 378 MLTRCGRMADAEKMFYRWPTDRDDSIIWTSMICGYARSGKPEHAILLFHQSQS 430 (812)
Q Consensus 378 ~y~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 430 (812)
+|...|++++|.+++.... +.......+..|.+.++++.|.+.++.|.+
T Consensus 111 i~~~~~~~~~AL~~l~~~~----~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~ 159 (290)
T PF04733_consen 111 ILFHEGDYEEALKLLHKGG----SLELLALAVQILLKMNRPDLAEKELKNMQQ 159 (290)
T ss_dssp HHCCCCHHHHHHCCCTTTT----CHHHHHHHHHHHHHTT-HHHHHHHHHHHHC
T ss_pred HHHHcCCHHHHHHHHHccC----cccHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4555666666666665431 244445556677777777777777777765
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.38 E-value=9.2e-06 Score=73.29 Aligned_cols=105 Identities=11% Similarity=0.015 Sum_probs=90.6
Q ss_pred HHHHHhhhhcCccCCcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccC
Q 040319 562 KLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLEEAEETINNMP-FQP-KVSVWRALLDSCRIRLNTTIGKRVAKHILAME 639 (812)
Q Consensus 562 ~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 639 (812)
.+|+...+ +.|+ ++..+...+...|++++|.+.++... ..| +...|..+..+|...|+++.|...++++++++
T Consensus 14 ~~~~~al~---~~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 14 DILKQLLS---VDPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHHH---cCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 34444443 3344 46678889999999999999999865 556 67899999999999999999999999999999
Q ss_pred CCCCchHHHHHhhhhhCCCcchHHHHHHHHHh
Q 040319 640 PQDPATYILVSNLYSSSGRWHNSELVREDMRE 671 (812)
Q Consensus 640 p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 671 (812)
|+++.++..++.+|...|++++|...++...+
T Consensus 89 p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~ 120 (144)
T PRK15359 89 ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIK 120 (144)
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999998754
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.36 E-value=5e-07 Score=57.82 Aligned_cols=32 Identities=25% Similarity=0.477 Sum_probs=21.7
Q ss_pred CCCCchhHHHHHHHHhhhcCCHHHHHHHHccC
Q 040319 468 GFSSDLGVANSMVSMYFKCCNMSNAIKAFNKM 499 (812)
Q Consensus 468 g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~ 499 (812)
|+.||..+||+||++|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 55666666666666666666666666666666
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.33 E-value=0.00012 Score=76.17 Aligned_cols=214 Identities=13% Similarity=0.051 Sum_probs=143.4
Q ss_pred HHHHHhcCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHhhhcCCHHHHHHHHccCCCCCh----------hHHHHHHH
Q 040319 443 SVLGVCGTLGFHEMGKQIHSYALKTGFSSDLGVANSMVSMYFKCCNMSNAIKAFNKMPSHDI----------VSWNGLIA 512 (812)
Q Consensus 443 ~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~----------~~~~~li~ 512 (812)
.+.++.-+..+++.+.+-+...+... .+..-++.....|...|........-+...+..- .+...+..
T Consensus 229 ~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~ 306 (539)
T KOG0548|consen 229 ELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGN 306 (539)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhh
Confidence 34445555566677777777666654 4555666677777777777766655444333111 12222444
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCCc-chHHHHHHHHhhcC
Q 040319 513 GHLLHRQGDEALAVWSSMEKASIKPDAITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTS-EHYASLVSVLGYWG 591 (812)
Q Consensus 513 ~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~y~~li~~l~~~g 591 (812)
+|.+.++++.|+..|.+.+..-..||..+ . ....+++.+..+...- +.|.. .---.=...+.+.|
T Consensus 307 a~~k~~~~~~ai~~~~kaLte~Rt~~~ls---------~--lk~~Ek~~k~~e~~a~---~~pe~A~e~r~kGne~Fk~g 372 (539)
T KOG0548|consen 307 AYTKREDYEGAIKYYQKALTEHRTPDLLS---------K--LKEAEKALKEAERKAY---INPEKAEEEREKGNEAFKKG 372 (539)
T ss_pred hhhhHHhHHHHHHHHHHHhhhhcCHHHHH---------H--HHHHHHHHHHHHHHHh---hChhHHHHHHHHHHHHHhcc
Confidence 66677788888888888766545554322 1 2334444444333321 33432 11111256677889
Q ss_pred ChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCCcchHHHHHHHH
Q 040319 592 FLEEAEETINNMP-FQP-KVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWHNSELVREDM 669 (812)
Q Consensus 592 ~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 669 (812)
++.+|+..+.++. ..| |...|.....++.+.|++..|..-++..++++|+....|..-+-++....+|++|.+.+.+-
T Consensus 373 dy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~ea 452 (539)
T KOG0548|consen 373 DYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEA 452 (539)
T ss_pred CHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998865 456 67788888888889999999999999999999999999999999999999999999998886
Q ss_pred HhC
Q 040319 670 REK 672 (812)
Q Consensus 670 ~~~ 672 (812)
.+.
T Consensus 453 le~ 455 (539)
T KOG0548|consen 453 LEL 455 (539)
T ss_pred Hhc
Confidence 543
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.33 E-value=1.4e-05 Score=76.42 Aligned_cols=118 Identities=9% Similarity=0.053 Sum_probs=97.9
Q ss_pred CchHHHHHHHHHHhhhhcCccCCcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHH-HHhcCC--HHHH
Q 040319 554 LNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLEEAEETINNMP-FQP-KVSVWRALLDS-CRIRLN--TTIG 628 (812)
Q Consensus 554 ~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~-~~~~~~--~~~a 628 (812)
.+..+++...++...+. -+.+...|..+...|...|++++|.+.+++.. ..| +..++..+..+ +...|+ .+.|
T Consensus 52 ~~~~~~~i~~l~~~L~~--~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 56677777777776652 23458889999999999999999999999865 666 57778777776 466676 5999
Q ss_pred HHHHHHHHccCCCCCchHHHHHhhhhhCCCcchHHHHHHHHHhCC
Q 040319 629 KRVAKHILAMEPQDPATYILVSNLYSSSGRWHNSELVREDMREKG 673 (812)
Q Consensus 629 ~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g 673 (812)
..+++++++++|+++.++..++..+...|++++|...++++.+..
T Consensus 130 ~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 130 REMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 999999999999999999999999999999999999999986643
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.32 E-value=0.00024 Score=75.95 Aligned_cols=268 Identities=11% Similarity=-0.031 Sum_probs=170.6
Q ss_pred CceeeeHHHHHHHHHcCChhhHHHHHHHhcccCCCCCChhhHHHH-HHHhcCccchHHHHHHHHHHHHhCCCCchhHHH-
Q 040319 400 DDSIIWTSMICGYARSGKPEHAILLFHQSQSEATVVPDEIALTSV-LGVCGTLGFHEMGKQIHSYALKTGFSSDLGVAN- 477 (812)
Q Consensus 400 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~~l-l~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~- 477 (812)
+....|..+...+...|+.+.+...+.+........++......+ ...+...|+++.+..++..+.+.. +.+...+.
T Consensus 4 ~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~ 82 (355)
T cd05804 4 DFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL 82 (355)
T ss_pred ccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH
Confidence 335556667777777888888777776665422223333222222 223466789999999999988763 33444444
Q ss_pred --HHHHHhhhcCCHHHHHHHHccCCC--CC-hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcC
Q 040319 478 --SMVSMYFKCCNMSNAIKAFNKMPS--HD-IVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDA-ITFVLIISAYRY 551 (812)
Q Consensus 478 --~Li~~y~k~g~~~~A~~~f~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~ 551 (812)
.+.......|..+.+.+.+..... |+ ...+..+...+...|++++|.+.+++..+ ..|+. ..+..+...+..
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~--~~p~~~~~~~~la~i~~~ 160 (355)
T cd05804 83 HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALE--LNPDDAWAVHAVAHVLEM 160 (355)
T ss_pred hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCcHHHHHHHHHHHH
Confidence 233333345667777777765333 22 23444566788899999999999999999 66776 455666667777
Q ss_pred CCCchHHHHHHHHHHhhhhcCccCCc--chHHHHHHHHhhcCChHHHHHHHHhCC-CCC--CHHHHH----HHHHHHHhc
Q 040319 552 TNLNLVDSCRKLFLSMKTIYNIEPTS--EHYASLVSVLGYWGFLEEAEETINNMP-FQP--KVSVWR----ALLDSCRIR 622 (812)
Q Consensus 552 ~~~g~~~~a~~~~~~m~~~~~~~p~~--~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p--~~~~~~----~ll~~~~~~ 622 (812)
.|++++|..+++.........|+. ..|..+...+...|++++|+..+++.. ..| ...... .++.-....
T Consensus 161 --~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 238 (355)
T cd05804 161 --QGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELA 238 (355)
T ss_pred --cCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhc
Confidence 999999999999887632222332 346678899999999999999999853 233 222111 333344455
Q ss_pred CCHHHHHHH---HHHHHccCCC--CCchHHHHHhhhhhCCCcchHHHHHHHHHhC
Q 040319 623 LNTTIGKRV---AKHILAMEPQ--DPATYILVSNLYSSSGRWHNSELVREDMREK 672 (812)
Q Consensus 623 ~~~~~a~~~---~~~~~~~~p~--~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 672 (812)
|....+.+. ........|. ....-...+.++...|++++|.+..+.++..
T Consensus 239 g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~ 293 (355)
T cd05804 239 GHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGR 293 (355)
T ss_pred CCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 654444443 2222111122 1222346778889999999999999988653
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.31 E-value=8.2e-06 Score=72.13 Aligned_cols=118 Identities=7% Similarity=0.005 Sum_probs=97.6
Q ss_pred cchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhh
Q 040319 577 SEHYASLVSVLGYWGFLEEAEETINNMP-FQP-KVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYS 654 (812)
Q Consensus 577 ~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~ 654 (812)
.+..-.+...+...|++++|..+|+-.. ..| +..-|..|...|...|++++|..++.++..++|+|+.++..++.+|.
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L 114 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 4555667777889999999999999865 667 67789999999999999999999999999999999999999999999
Q ss_pred hCCCcchHHHHHHHHHhCCCCCCCceeEEEECCEEEEEeeCCCCCcchHHHHHHHHHHHHHHH
Q 040319 655 SSGRWHNSELVREDMREKGFRKHPSRSWIIHQNKVHSFYVRDKSHPREKDIYSGLEILILECL 717 (812)
Q Consensus 655 ~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~~~ 717 (812)
..|+.++|.+-|+.... |. ..+|+-.+|..+.+.....+.
T Consensus 115 ~lG~~~~A~~aF~~Ai~----------~~-------------~~~~~~~~l~~~A~~~L~~l~ 154 (157)
T PRK15363 115 ACDNVCYAIKALKAVVR----------IC-------------GEVSEHQILRQRAEKMLQQLS 154 (157)
T ss_pred HcCCHHHHHHHHHHHHH----------Hh-------------ccChhHHHHHHHHHHHHHHhh
Confidence 99999999999997643 21 145666777666666555543
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.30 E-value=0.013 Score=71.20 Aligned_cols=366 Identities=11% Similarity=0.010 Sum_probs=194.8
Q ss_pred HHHHHhcCChHHHHHHHhcCCCCcchh--HHHHHHHHHhhCChhHHHHHhccCCC----CCcccHHHHHHHHHhCCChHH
Q 040319 244 IGFYTKCGRVKDVVALLERMPVMDIIT--LTEIIIAYMEFGYVDLAVEIFDKMPE----KNSVSYNALLAGYCKNGKAME 317 (812)
Q Consensus 244 i~~~~~~g~~~~A~~l~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~f~~m~~----~d~~~~~~li~~~~~~g~~~~ 317 (812)
...|...|++.+|..........+... .......+...|+.+.+...++.++. .+..........+...|++++
T Consensus 348 a~~~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~ 427 (903)
T PRK04841 348 AEAWLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSE 427 (903)
T ss_pred HHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHH
Confidence 344566677776666555554332211 11122344456777777777776642 222223333445566778888
Q ss_pred HHHHHHHHHHcCCCCC---HhHHHHHHHHhccchhhhhHHHHHhhHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhc
Q 040319 318 ALGLFVKLLEEGLVLT---EFTLTSVVNACGLIMEAKLSEQIHGFVMKFGLGSNDCIEAALLDMLTRCGRMADAEKMFYR 394 (812)
Q Consensus 318 A~~l~~~m~~~g~~p~---~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~ 394 (812)
|..++......--..+ ...... .....+...+...|++++|...+++
T Consensus 428 a~~~l~~a~~~~~~~~~~~~~~~~~------------------------------~~~~~~a~~~~~~g~~~~A~~~~~~ 477 (903)
T PRK04841 428 VNTLLARAEQELKDRNIELDGTLQA------------------------------EFNALRAQVAINDGDPEEAERLAEL 477 (903)
T ss_pred HHHHHHHHHHhccccCcccchhHHH------------------------------HHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 8777776644210000 000000 0001112233455666666666554
Q ss_pred CCCCC--Cc----eeeeHHHHHHHHHcCChhhHHHHHHHhccc---CCC-CCChhhHHHHHHHhcCccchHHHHHHHHHH
Q 040319 395 WPTDR--DD----SIIWTSMICGYARSGKPEHAILLFHQSQSE---ATV-VPDEIALTSVLGVCGTLGFHEMGKQIHSYA 464 (812)
Q Consensus 395 ~~~~~--~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~g~-~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~ 464 (812)
..... .+ ...++.+...+...|++++|...+.+.... .|- .+...++..+...+...|+++.|...+...
T Consensus 478 al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~a 557 (903)
T PRK04841 478 ALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKA 557 (903)
T ss_pred HHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 32111 10 112334444556677777777666665430 010 001122333344556667777777766655
Q ss_pred HH----hCCC---CchhHHHHHHHHhhhcCCHHHHHHHHccCCC------C--ChhHHHHHHHHHHhcCChHHHHHHHHH
Q 040319 465 LK----TGFS---SDLGVANSMVSMYFKCCNMSNAIKAFNKMPS------H--DIVSWNGLIAGHLLHRQGDEALAVWSS 529 (812)
Q Consensus 465 ~~----~g~~---~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~------~--~~~~~~~li~~~~~~g~~~~A~~l~~~ 529 (812)
.. .+.. .....+..+...+...|++++|...+.+... + ....+..+...+...|++++|.+.+++
T Consensus 558 l~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~ 637 (903)
T PRK04841 558 FQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNR 637 (903)
T ss_pred HHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 43 2211 1223344556667777999999888776532 1 123444566677889999999999888
Q ss_pred HHHCCCC-CCHHHHH-----HHHHHhcCCCCchHHHHHHHHHHhhhhcCccCC--cchHHHHHHHHhhcCChHHHHHHHH
Q 040319 530 MEKASIK-PDAITFV-----LIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPT--SEHYASLVSVLGYWGFLEEAEETIN 601 (812)
Q Consensus 530 m~~~g~~-pd~~t~~-----~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~y~~li~~l~~~g~~~~A~~~~~ 601 (812)
.....-. .....+. ..+..+.. .|..+.|.+.+........-.+. ...+..+..++...|+.++|...++
T Consensus 638 a~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~ 715 (903)
T PRK04841 638 LENLLGNGRYHSDWIANADKVRLIYWQM--TGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILE 715 (903)
T ss_pred HHHHHhcccccHhHhhHHHHHHHHHHHH--CCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 7552111 1111110 11123334 68888888887765431100010 1113456777888899999988887
Q ss_pred hCC-------CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCC
Q 040319 602 NMP-------FQPK-VSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQ 641 (812)
Q Consensus 602 ~m~-------~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~ 641 (812)
+.. ..++ ..+...+..++...|+.+.|...+++++++...
T Consensus 716 ~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~ 763 (903)
T PRK04841 716 ELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANR 763 (903)
T ss_pred HHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCc
Confidence 753 1222 234555556688889999999999999887644
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.27 E-value=3.8e-05 Score=88.02 Aligned_cols=199 Identities=11% Similarity=0.067 Sum_probs=168.8
Q ss_pred CCchhHHHHHHHHhhhcCCHHHHHHHHccCCC--------CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH
Q 040319 470 SSDLGVANSMVSMYFKCCNMSNAIKAFNKMPS--------HDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDAIT 541 (812)
Q Consensus 470 ~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~--------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t 541 (812)
+.+...|-..|......+++++|++++++... .-...|.++++.....|.-+...++|+++.+ +.-....
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcq--ycd~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQ--YCDAYTV 1532 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHH--hcchHHH
Confidence 44667777888888899999999999988754 2246899999999999988999999999988 4444567
Q ss_pred HHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCCcchHHHHHHHHhhcCChHHHHHHHHhCC-CCCC---HHHHHHHHH
Q 040319 542 FVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLEEAEETINNMP-FQPK---VSVWRALLD 617 (812)
Q Consensus 542 ~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p~---~~~~~~ll~ 617 (812)
|..|+.-|.. .+..++|.++++.|.++++ .....|..+++.+.+..+-+.|..++++.. .-|. .-...-.+.
T Consensus 1533 ~~~L~~iy~k--~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAq 1608 (1710)
T KOG1070|consen 1533 HLKLLGIYEK--SEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQ 1608 (1710)
T ss_pred HHHHHHHHHH--hhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHH
Confidence 8888888988 9999999999999998766 678899999999999999999999998843 3343 344555566
Q ss_pred HHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCCcchHHHHHHHHHhCCC
Q 040319 618 SCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWHNSELVREDMREKGF 674 (812)
Q Consensus 618 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~ 674 (812)
.-.++|+.+.|+.+++-++.-.|.-...|..++++-.+.|+.+.++.++++.-..++
T Consensus 1609 LEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l 1665 (1710)
T KOG1070|consen 1609 LEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKL 1665 (1710)
T ss_pred HHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCC
Confidence 677899999999999999999999999999999999999999999999999876655
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.26 E-value=6.7e-05 Score=71.84 Aligned_cols=178 Identities=16% Similarity=0.129 Sum_probs=107.2
Q ss_pred cCCHHHHHHHHccCCC-CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCchHHHHHHHH
Q 040319 486 CCNMSNAIKAFNKMPS-HDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDAITFVLIISAYRYTNLNLVDSCRKLF 564 (812)
Q Consensus 486 ~g~~~~A~~~f~~~~~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~g~~~~a~~~~ 564 (812)
.+++..++.+.+..+. .+..+.+.......+.|++++|++-|+...+-|---....|+..+.-|. .|+.+.|.++.
T Consensus 125 e~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~---~~qyasALk~i 201 (459)
T KOG4340|consen 125 EGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYS---SRQYASALKHI 201 (459)
T ss_pred cccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHh---hhhHHHHHHHH
Confidence 3445555555555542 3344444444444455666666666655555322222344554444333 35555555555
Q ss_pred HHhhhhcCcc---------------------CCcchHHHHHH-------HHhhcCChHHHHHHHHhCC----CCCCHHHH
Q 040319 565 LSMKTIYNIE---------------------PTSEHYASLVS-------VLGYWGFLEEAEETINNMP----FQPKVSVW 612 (812)
Q Consensus 565 ~~m~~~~~~~---------------------p~~~~y~~li~-------~l~~~g~~~~A~~~~~~m~----~~p~~~~~ 612 (812)
.++.+ .|++ |-.-|-+.++. .+.+.|+++.|.+.+..|| .+.|++|.
T Consensus 202 SEIie-RG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTL 280 (459)
T KOG4340|consen 202 SEIIE-RGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTL 280 (459)
T ss_pred HHHHH-hhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhh
Confidence 55543 2222 11223344443 4567899999999999998 34567776
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCCcchHHHHHHH
Q 040319 613 RALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWHNSELVRED 668 (812)
Q Consensus 613 ~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~ 668 (812)
..+.-. -..++...+.+-..-++++.|--+.++..+.-+|++..-++-|..+.-+
T Consensus 281 HN~Al~-n~~~~p~~g~~KLqFLL~~nPfP~ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 281 HNQALM-NMDARPTEGFEKLQFLLQQNPFPPETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred hHHHHh-cccCCccccHHHHHHHHhcCCCChHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 554322 2346666677777778899998888999999999999999999888754
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.25 E-value=4.3e-05 Score=87.57 Aligned_cols=242 Identities=14% Similarity=0.116 Sum_probs=176.3
Q ss_pred HHHHHHhcCCCCCCceeeeHHHHHHHHHcCChhhHHHHHHHhcccCCCCCCh-----hhHHHHHHHhcCccchHHHHHHH
Q 040319 387 DAEKMFYRWPTDRDDSIIWTSMICGYARSGKPEHAILLFHQSQSEATVVPDE-----IALTSVLGVCGTLGFHEMGKQIH 461 (812)
Q Consensus 387 ~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~-----~t~~~ll~a~~~~~~~~~a~~~~ 461 (812)
.|...-+.+...+++...|-..|....+.++.++|.+++++... .+.+.+ -.|.++++.--..|.-+...+++
T Consensus 1443 saeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~--tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVF 1520 (1710)
T KOG1070|consen 1443 SAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALK--TINFREEEEKLNIWIAYLNLENAYGTEESLKKVF 1520 (1710)
T ss_pred CHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhh--hCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHH
Confidence 34444444554566778899999999999999999999999875 243332 24666666555566777888888
Q ss_pred HHHHHhCCCCchhHHHHHHHHhhhcCCHHHHHHHHccCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 040319 462 SYALKTGFSSDLGVANSMVSMYFKCCNMSNAIKAFNKMPS---HDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPD 538 (812)
Q Consensus 462 ~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd 538 (812)
+++.+.. ....+|..|...|.+.++.++|-++|+.|.+ .....|...+..+.++.+.+.|..++.+.++ .-|-
T Consensus 1521 eRAcqyc--d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~--~lPk 1596 (1710)
T KOG1070|consen 1521 ERACQYC--DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALK--SLPK 1596 (1710)
T ss_pred HHHHHhc--chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHh--hcch
Confidence 8888743 3456788899999999999999999999976 3667899999999999999999999999988 5665
Q ss_pred --HHHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCCcchHHHHHHHHhhcCChHHHHHHHHhCC---CCCC--HHH
Q 040319 539 --AITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLEEAEETINNMP---FQPK--VSV 611 (812)
Q Consensus 539 --~~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~---~~p~--~~~ 611 (812)
++-+.+-..-+. .+.|+.+.|+.+|+.....| +...+.|+.+|++=.+.|..+.+..+|++.. +.|. -..
T Consensus 1597 ~eHv~~IskfAqLE-Fk~GDaeRGRtlfEgll~ay--PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKff 1673 (1710)
T KOG1070|consen 1597 QEHVEFISKFAQLE-FKYGDAERGRTLFEGLLSAY--PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFF 1673 (1710)
T ss_pred hhhHHHHHHHHHHH-hhcCCchhhHHHHHHHHhhC--ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHH
Confidence 333332221111 13788899999999887643 3457889999999999999888888888853 3342 456
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHc
Q 040319 612 WRALLDSCRIRLNTTIGKRVAKHILA 637 (812)
Q Consensus 612 ~~~ll~~~~~~~~~~~a~~~~~~~~~ 637 (812)
|.-.|.--..+||-+..+.+=.++.+
T Consensus 1674 fKkwLeyEk~~Gde~~vE~VKarA~E 1699 (1710)
T KOG1070|consen 1674 FKKWLEYEKSHGDEKNVEYVKARAKE 1699 (1710)
T ss_pred HHHHHHHHHhcCchhhHHHHHHHHHH
Confidence 66777777777777666665444443
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.24 E-value=0.0004 Score=66.71 Aligned_cols=208 Identities=11% Similarity=-0.003 Sum_probs=106.3
Q ss_pred hCChhHHHHHhccCCC-CCcccHHHHHHHHHhCCChHHHHHHHHHHHHc-CCCCCHhHHHHHHHHhccchhhhhHHHHHh
Q 040319 281 FGYVDLAVEIFDKMPE-KNSVSYNALLAGYCKNGKAMEALGLFVKLLEE-GLVLTEFTLTSVVNACGLIMEAKLSEQIHG 358 (812)
Q Consensus 281 ~g~~~~A~~~f~~m~~-~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~ 358 (812)
.+++..+..+.++.+. .+..+.+.......+.|+++.|++-|+...+- |..| ...|+..+. ..+.++.+.|.....
T Consensus 125 e~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqp-llAYniALa-Hy~~~qyasALk~iS 202 (459)
T KOG4340|consen 125 EGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQP-LLAYNLALA-HYSSRQYASALKHIS 202 (459)
T ss_pred cccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCc-hhHHHHHHH-HHhhhhHHHHHHHHH
Confidence 4555555556666663 44444444444455666777777777666553 3333 344444432 334566666666666
Q ss_pred hHHHhcCCCchhHHH----HHHHHHHhcCCHHHHHHHHhcCCCCCCceeeeHHHHHHHHHcCChhhHHHHHHHhcccCCC
Q 040319 359 FVMKFGLGSNDCIEA----ALLDMLTRCGRMADAEKMFYRWPTDRDDSIIWTSMICGYARSGKPEHAILLFHQSQSEATV 434 (812)
Q Consensus 359 ~~~~~g~~~~~~~~~----~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~ 434 (812)
+++..|+...+...- -.++.-. .|+ -..+-.+.. +..+|.-...+.+.++++.|.+.+..|.-+..-
T Consensus 203 EIieRG~r~HPElgIGm~tegiDvrs-vgN---t~~lh~Sal-----~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~ 273 (459)
T KOG4340|consen 203 EIIERGIRQHPELGIGMTTEGIDVRS-VGN---TLVLHQSAL-----VEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEE 273 (459)
T ss_pred HHHHhhhhcCCccCccceeccCchhc-ccc---hHHHHHHHH-----HHHhhhhhhhhhhcccHHHHHHHhhcCCCcccc
Confidence 666666543222110 0000000 000 000000000 122333344456677777777777777654445
Q ss_pred CCChhhHHHHHHHhcCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHhhhcCCHHHHHHHHccCCC
Q 040319 435 VPDEIALTSVLGVCGTLGFHEMGKQIHSYALKTGFSSDLGVANSMVSMYFKCCNMSNAIKAFNKMPS 501 (812)
Q Consensus 435 ~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~ 501 (812)
..|.+|+..+.-.-. .+++..+..-+..+...+. ....++..++-.|+|..-++-|..++.+-..
T Consensus 274 elDPvTLHN~Al~n~-~~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyCKNeyf~lAADvLAEn~~ 338 (459)
T KOG4340|consen 274 ELDPVTLHNQALMNM-DARPTEGFEKLQFLLQQNP-FPPETFANLLLLYCKNEYFDLAADVLAENAH 338 (459)
T ss_pred cCCchhhhHHHHhcc-cCCccccHHHHHHHHhcCC-CChHHHHHHHHHHhhhHHHhHHHHHHhhCcc
Confidence 566777655432111 1233344444444444332 3456777778889999889988888876543
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.23 E-value=0.00013 Score=74.99 Aligned_cols=168 Identities=8% Similarity=0.018 Sum_probs=105.2
Q ss_pred HhhhcC-CHHHHHHHHccCCC---CChhHHHHHHHHHHhcCCh--HHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcCCCC
Q 040319 482 MYFKCC-NMSNAIKAFNKMPS---HDIVSWNGLIAGHLLHRQG--DEALAVWSSMEKASIKPDA-ITFVLIISAYRYTNL 554 (812)
Q Consensus 482 ~y~k~g-~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~--~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~~~ 554 (812)
++.+.| ++++++..++++.+ ++...|+.....+.+.|+. ++++.+++++++ ..|.. .+|....-++.. .
T Consensus 80 iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~--~dpkNy~AW~~R~w~l~~--l 155 (320)
T PLN02789 80 CLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILS--LDAKNYHAWSHRQWVLRT--L 155 (320)
T ss_pred HHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHH--hCcccHHHHHHHHHHHHH--h
Confidence 333444 35666666655443 3445566554444445542 556677777766 55544 455555555555 6
Q ss_pred chHHHHHHHHHHhhhhcCccC-CcchHHHHHHHHhhc---CC----hHHHHHHHHh-CCCCC-CHHHHHHHHHHHHhc--
Q 040319 555 NLVDSCRKLFLSMKTIYNIEP-TSEHYASLVSVLGYW---GF----LEEAEETINN-MPFQP-KVSVWRALLDSCRIR-- 622 (812)
Q Consensus 555 g~~~~a~~~~~~m~~~~~~~p-~~~~y~~li~~l~~~---g~----~~~A~~~~~~-m~~~p-~~~~~~~ll~~~~~~-- 622 (812)
|+++++++.++.+.+. .| +...|+....++.+. |. .++++++..+ +...| |...|+-+.+.+...
T Consensus 156 ~~~~eeL~~~~~~I~~---d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~ 232 (320)
T PLN02789 156 GGWEDELEYCHQLLEE---DVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKE 232 (320)
T ss_pred hhHHHHHHHHHHHHHH---CCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCc
Confidence 6777777777776652 22 244455554444433 22 2456677644 44566 678999998888774
Q ss_pred --CCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhC
Q 040319 623 --LNTTIGKRVAKHILAMEPQDPATYILVSNLYSSS 656 (812)
Q Consensus 623 --~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~ 656 (812)
++...|...+.++++.+|.++.+...|+++|+..
T Consensus 233 ~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 233 ALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEG 268 (320)
T ss_pred ccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhh
Confidence 3446688888999999999999999999999864
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.18 E-value=4.4e-05 Score=80.14 Aligned_cols=106 Identities=16% Similarity=0.176 Sum_probs=87.9
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHhhhcCCHHHHHHHHccCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 040319 460 IHSYALKTGFSSDLGVANSMVSMYFKCCNMSNAIKAFNKMPS---HDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIK 536 (812)
Q Consensus 460 ~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 536 (812)
+++.....+...|+.+...|.-.|--.|++++|...|+.... .|...||-|...++...+.++|+..|++.++ ++
T Consensus 417 fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--Lq 494 (579)
T KOG1125|consen 417 FLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQ 494 (579)
T ss_pred HHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cC
Confidence 344455566668889999999999999999999999998765 5678999999999999999999999999999 99
Q ss_pred CCHH-HHHHHHHHhcCCCCchHHHHHHHHHHhhh
Q 040319 537 PDAI-TFVLIISAYRYTNLNLVDSCRKLFLSMKT 569 (812)
Q Consensus 537 pd~~-t~~~ll~a~~~~~~g~~~~a~~~~~~m~~ 569 (812)
|+-+ ....|.-+|.. .|.+++|.++|-+...
T Consensus 495 P~yVR~RyNlgIS~mN--lG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 495 PGYVRVRYNLGISCMN--LGAYKEAVKHLLEALS 526 (579)
T ss_pred CCeeeeehhhhhhhhh--hhhHHHHHHHHHHHHH
Confidence 9973 33445557777 9999999998866543
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.037 Score=67.39 Aligned_cols=87 Identities=14% Similarity=0.234 Sum_probs=52.8
Q ss_pred HHhhhcCCHHHHHHHHccCCCCCh-------hHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCCCH-HHHHHHHHH
Q 040319 481 SMYFKCCNMSNAIKAFNKMPSHDI-------VSWNGLIAGHLLHRQGDEALAVWSSMEKA----SIKPDA-ITFVLIISA 548 (812)
Q Consensus 481 ~~y~k~g~~~~A~~~f~~~~~~~~-------~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~pd~-~t~~~ll~a 548 (812)
..+...|+.+.|...+.....+.. ..+..+..++...|++++|...+++.... |..++. .+...+..+
T Consensus 661 ~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a 740 (903)
T PRK04841 661 IYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQL 740 (903)
T ss_pred HHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHH
Confidence 344557788888877765544221 11345566677788888888888877652 222222 233444445
Q ss_pred hcCCCCchHHHHHHHHHHhhh
Q 040319 549 YRYTNLNLVDSCRKLFLSMKT 569 (812)
Q Consensus 549 ~~~~~~g~~~~a~~~~~~m~~ 569 (812)
+.. .|+.++|...+.+..+
T Consensus 741 ~~~--~G~~~~A~~~L~~Al~ 759 (903)
T PRK04841 741 YWQ--QGRKSEAQRVLLEALK 759 (903)
T ss_pred HHH--cCCHHHHHHHHHHHHH
Confidence 555 7777777777777654
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.15 E-value=3.9e-05 Score=82.55 Aligned_cols=186 Identities=13% Similarity=0.150 Sum_probs=116.9
Q ss_pred CCCCchhHHHHHHHHhhhcCCHHHHHHHHccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 040319 468 GFSSDLGVANSMVSMYFKCCNMSNAIKAFNKMPSHDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDAITFVLIIS 547 (812)
Q Consensus 468 g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~ 547 (812)
+++|-...-..+.+.+.++|-...|..+|++. ..|.-.|..|...|+..+|..+..+-.+ -+||..-|..+.+
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGD 465 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGD 465 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhh
Confidence 44555566667788888888888888888875 5677788888888888888888888777 6788888888888
Q ss_pred HhcCCCCchHHHHHHHHHHhhhhcCccCCcchHHHHHHHHhhcCChHHHHHHHHh-CCCCC-CHHHHHHHHHHHHhcCCH
Q 040319 548 AYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLEEAEETINN-MPFQP-KVSVWRALLDSCRIRLNT 625 (812)
Q Consensus 548 a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~-m~~~p-~~~~~~~ll~~~~~~~~~ 625 (812)
.... ...+++|+++++....+.. ..+.....+.++++++.+.++. +.+.| -..+|-.+..+.-+.++.
T Consensus 466 v~~d--~s~yEkawElsn~~sarA~--------r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~ 535 (777)
T KOG1128|consen 466 VLHD--PSLYEKAWELSNYISARAQ--------RSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKE 535 (777)
T ss_pred hccC--hHHHHHHHHHhhhhhHHHH--------HhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhh
Confidence 8776 7778888888776544200 0111112234555555555544 23334 334555555555555555
Q ss_pred HHHHHHHHHHHccCCCCCchHHHHHhhhhhCCCcchHHHHHHHHH
Q 040319 626 TIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWHNSELVREDMR 670 (812)
Q Consensus 626 ~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 670 (812)
+.|..+|-....++|++...++.++-.|.+.|+-.+|....++.-
T Consensus 536 q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAl 580 (777)
T KOG1128|consen 536 QAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEAL 580 (777)
T ss_pred HHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHh
Confidence 555555555555555555555555555555555555555555443
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.00011 Score=70.19 Aligned_cols=154 Identities=14% Similarity=0.168 Sum_probs=110.1
Q ss_pred HHHhhhcCCHHHHHHHHccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcCCCCchHH
Q 040319 480 VSMYFKCCNMSNAIKAFNKMPSHDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDA-ITFVLIISAYRYTNLNLVD 558 (812)
Q Consensus 480 i~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~~~g~~~ 558 (812)
+-.|.+.|+++......+.+..|. ..|...++.++++..+++.++ ..|+. ..|..+...+.. .|+++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~--~~P~~~~~w~~Lg~~~~~--~g~~~ 90 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIR--ANPQNSEQWALLGEYYLW--RNDYD 90 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHH--CCCHH
Confidence 456777777777655443332221 011225666778888888777 56665 456666667777 88899
Q ss_pred HHHHHHHHhhhhcCccC-CcchHHHHHHHH-hhcCC--hHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHH
Q 040319 559 SCRKLFLSMKTIYNIEP-TSEHYASLVSVL-GYWGF--LEEAEETINNMP-FQP-KVSVWRALLDSCRIRLNTTIGKRVA 632 (812)
Q Consensus 559 ~a~~~~~~m~~~~~~~p-~~~~y~~li~~l-~~~g~--~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~ 632 (812)
+|...|+...+ +.| +...+..+..++ .+.|+ .++|.+++++.. ..| +..++..+...+...|++++|+..+
T Consensus 91 ~A~~a~~~Al~---l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~ 167 (198)
T PRK10370 91 NALLAYRQALQ---LRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELW 167 (198)
T ss_pred HHHHHHHHHHH---hCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHH
Confidence 99998888776 445 477788888864 67777 489999998865 666 5677777778899999999999999
Q ss_pred HHHHccCCCCCchHHH
Q 040319 633 KHILAMEPQDPATYIL 648 (812)
Q Consensus 633 ~~~~~~~p~~~~~~~~ 648 (812)
+++++++|.+..-+..
T Consensus 168 ~~aL~l~~~~~~r~~~ 183 (198)
T PRK10370 168 QKVLDLNSPRVNRTQL 183 (198)
T ss_pred HHHHhhCCCCccHHHH
Confidence 9999999886665543
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.14 E-value=4e-06 Score=54.63 Aligned_cols=35 Identities=34% Similarity=0.528 Sum_probs=32.9
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH
Q 040319 505 VSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDA 539 (812)
Q Consensus 505 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~ 539 (812)
.+||+||.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999983
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.029 Score=62.72 Aligned_cols=168 Identities=10% Similarity=0.034 Sum_probs=94.9
Q ss_pred HHHHHHhcCccchHHH---HHHHHHHHHhCCCCchhHHHHHHHHhhhcCCHHHHHHHHccCCCCChh--HHHH-HHHHHH
Q 040319 442 TSVLGVCGTLGFHEMG---KQIHSYALKTGFSSDLGVANSMVSMYFKCCNMSNAIKAFNKMPSHDIV--SWNG-LIAGHL 515 (812)
Q Consensus 442 ~~ll~a~~~~~~~~~a---~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~--~~~~-li~~~~ 515 (812)
+.++..|.+.++.... .-+++..... -+.|..+--.||..|.-.|-+..|..+|..+.-+++. |..- +..-+.
T Consensus 440 ~~Lid~~rktnd~~~l~eaI~LLE~glt~-s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~~~~~~~ 518 (932)
T KOG2053|consen 440 NHLIDLWRKTNDLTDLFEAITLLENGLTK-SPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHLIFRRAE 518 (932)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHHhhc-CCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHHHHHHHH
Confidence 4566777777765532 2233332221 1335555567899999999999999999988754432 2222 234445
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHhcCCCCchHHHHHHH---HHHhhhhcCccCCcchHHHHHHHHhhc
Q 040319 516 LHRQGDEALAVWSSMEKASIKPDA--ITFVLIISAYRYTNLNLVDSCRKL---FLSMKTIYNIEPTSEHYASLVSVLGYW 590 (812)
Q Consensus 516 ~~g~~~~A~~l~~~m~~~g~~pd~--~t~~~ll~a~~~~~~g~~~~a~~~---~~~m~~~~~~~p~~~~y~~li~~l~~~ 590 (812)
..|++..+...+++..+ +--+. .|--.+..||.+ |.+.+-.+. =+++.. ..-.-...+=+..++.+...
T Consensus 519 t~g~~~~~s~~~~~~lk--fy~~~~kE~~eyI~~AYr~---g~ySkI~em~~fr~rL~~-S~q~~a~~VE~~~l~ll~~~ 592 (932)
T KOG2053|consen 519 TSGRSSFASNTFNEHLK--FYDSSLKETPEYIALAYRR---GAYSKIPEMLAFRDRLMH-SLQKWACRVENLQLSLLCNA 592 (932)
T ss_pred hcccchhHHHHHHHHHH--HHhhhhhhhHHHHHHHHHc---CchhhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhC
Confidence 56777777777766655 21111 233334445544 444443332 222221 00001122335567888999
Q ss_pred CChHHHHHHHHhCCCCC--CHHHHHHHH
Q 040319 591 GFLEEAEETINNMPFQP--KVSVWRALL 616 (812)
Q Consensus 591 g~~~~A~~~~~~m~~~p--~~~~~~~ll 616 (812)
++.++-...+..|..+| |..-|..|.
T Consensus 593 ~~~~q~~~~~~~~~l~~~e~~I~w~~L~ 620 (932)
T KOG2053|consen 593 DRGTQLLKLLESMKLPPSEDRIQWVSLS 620 (932)
T ss_pred CcHHHHHHHHhccccCcchhhccccccc
Confidence 99999999998887555 445555553
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.00012 Score=72.84 Aligned_cols=181 Identities=9% Similarity=-0.018 Sum_probs=127.9
Q ss_pred hhhHHHHHHHhcCccchHHHHHHHHHHHHhCCC-C-chhHHHHHHHHhhhcCCHHHHHHHHccCCC--CCh-h---HHHH
Q 040319 438 EIALTSVLGVCGTLGFHEMGKQIHSYALKTGFS-S-DLGVANSMVSMYFKCCNMSNAIKAFNKMPS--HDI-V---SWNG 509 (812)
Q Consensus 438 ~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~-~-~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~--~~~-~---~~~~ 509 (812)
...+-.....+...|+++.|...+..+.+.... | ....+..+...|.+.|++++|...|+++.+ |+. . .|..
T Consensus 33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 112 (235)
T TIGR03302 33 AEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYL 112 (235)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHH
Confidence 345566667788899999999999998875422 1 124667788999999999999999998865 322 2 4666
Q ss_pred HHHHHHhc--------CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCCcchHH
Q 040319 510 LIAGHLLH--------RQGDEALAVWSSMEKASIKPDAITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYA 581 (812)
Q Consensus 510 li~~~~~~--------g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~ 581 (812)
+..++.+. |+.++|++.|+++.+ ..|+..-....+.. .+.... ... ....
T Consensus 113 ~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~a~~~-----~~~~~~------~~~---------~~~~ 170 (235)
T TIGR03302 113 RGLSNYNQIDRVDRDQTAAREAFEAFQELIR--RYPNSEYAPDAKKR-----MDYLRN------RLA---------GKEL 170 (235)
T ss_pred HHHHHHHhcccccCCHHHHHHHHHHHHHHHH--HCCCChhHHHHHHH-----HHHHHH------HHH---------HHHH
Confidence 66667654 788999999999998 67876432222211 111100 000 1123
Q ss_pred HHHHHHhhcCChHHHHHHHHhCC-C---CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCC
Q 040319 582 SLVSVLGYWGFLEEAEETINNMP-F---QP-KVSVWRALLDSCRIRLNTTIGKRVAKHILAMEP 640 (812)
Q Consensus 582 ~li~~l~~~g~~~~A~~~~~~m~-~---~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p 640 (812)
.+.+.+.+.|++++|...+++.. . .| ....|..+..++...|+.++|...++.+....|
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 56778899999999999888753 2 23 356888899999999999999998888766555
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.07 E-value=8.6e-05 Score=79.99 Aligned_cols=218 Identities=17% Similarity=0.169 Sum_probs=173.5
Q ss_pred cCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCCceeeeHHHHHHHHHcCChhhHHHHHHHhcccCCCCCChhhHHH
Q 040319 364 GLGSNDCIEAALLDMLTRCGRMADAEKMFYRWPTDRDDSIIWTSMICGYARSGKPEHAILLFHQSQSEATVVPDEIALTS 443 (812)
Q Consensus 364 g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ 443 (812)
+++|--..-..+...+.++|-..+|..+|+++. .|...|-.|...|+..+|..+..+-.+ -+||..-|..
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erle-------mw~~vi~CY~~lg~~~kaeei~~q~le---k~~d~~lyc~ 462 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERLE-------MWDPVILCYLLLGQHGKAEEINRQELE---KDPDPRLYCL 462 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhHH-------HHHHHHHHHHHhcccchHHHHHHHHhc---CCCcchhHHH
Confidence 455666666778889999999999999998855 677789999999999999998887765 6788888888
Q ss_pred HHHHhcCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHhhhcCCHHHHHHHHccCCC---CChhHHHHHHHHHHhcCCh
Q 040319 444 VLGVCGTLGFHEMGKQIHSYALKTGFSSDLGVANSMVSMYFKCCNMSNAIKAFNKMPS---HDIVSWNGLIAGHLLHRQG 520 (812)
Q Consensus 444 ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~ 520 (812)
+.+...+..-++.|.++.++.-.. .-..+.....+.++++++.+.|+.-.+ --..+|-....+..+.++.
T Consensus 463 LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~ 535 (777)
T KOG1128|consen 463 LGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKE 535 (777)
T ss_pred hhhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhh
Confidence 888888888888888877654321 112222233447899999999986544 3457899999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCCcchHHHHHHHHhhcCChHHHHHH
Q 040319 521 DEALAVWSSMEKASIKPDA-ITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLEEAEET 599 (812)
Q Consensus 521 ~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~ 599 (812)
+.|.+.|..-.. ..||. ..|+.+-.++.. .|.-.+|...+++..+ .+ .-+...|-..+-.....|.+++|++.
T Consensus 536 q~av~aF~rcvt--L~Pd~~eaWnNls~ayi~--~~~k~ra~~~l~EAlK-cn-~~~w~iWENymlvsvdvge~eda~~A 609 (777)
T KOG1128|consen 536 QAAVKAFHRCVT--LEPDNAEAWNNLSTAYIR--LKKKKRAFRKLKEALK-CN-YQHWQIWENYMLVSVDVGEFEDAIKA 609 (777)
T ss_pred HHHHHHHHHHhh--cCCCchhhhhhhhHHHHH--HhhhHHHHHHHHHHhh-cC-CCCCeeeechhhhhhhcccHHHHHHH
Confidence 999999999988 88988 679999999988 9999999999998886 55 34455666667777889999999999
Q ss_pred HHhCC
Q 040319 600 INNMP 604 (812)
Q Consensus 600 ~~~m~ 604 (812)
+.++.
T Consensus 610 ~~rll 614 (777)
T KOG1128|consen 610 YHRLL 614 (777)
T ss_pred HHHHH
Confidence 88864
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.024 Score=59.57 Aligned_cols=169 Identities=11% Similarity=0.064 Sum_probs=90.6
Q ss_pred hHHHHHHHhcccCCCCCChhhHHHHHHHhcCccchHHHHHHHHHHHHhCCCC-chhHHHHHHHHhhhcCCHHHHHHHHcc
Q 040319 420 HAILLFHQSQSEATVVPDEIALTSVLGVCGTLGFHEMGKQIHSYALKTGFSS-DLGVANSMVSMYFKCCNMSNAIKAFNK 498 (812)
Q Consensus 420 ~A~~~~~~m~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~-~~~~~~~Li~~y~k~g~~~~A~~~f~~ 498 (812)
...+.+.+......+.|+ .+|...++...+...++.|+.+|..+.+.+..+ ++.++++++..|+ .++.+-|.++|+-
T Consensus 349 ~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeL 426 (656)
T KOG1914|consen 349 KVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFEL 426 (656)
T ss_pred hhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHH
Confidence 334444444432233333 345555666666666677777777777666555 6666677776665 3556666666653
Q ss_pred CCC--CChhHH-HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcC-
Q 040319 499 MPS--HDIVSW-NGLIAGHLLHRQGDEALAVWSSMEKASIKPDA--ITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYN- 572 (812)
Q Consensus 499 ~~~--~~~~~~-~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~--~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~- 572 (812)
=.. +|...| +..+.-+...++-..|..+|++.+..++.||. ..|..+|.-=+. -|++....++-+++...+.
T Consensus 427 GLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~--vGdL~si~~lekR~~~af~~ 504 (656)
T KOG1914|consen 427 GLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESN--VGDLNSILKLEKRRFTAFPA 504 (656)
T ss_pred HHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHh--cccHHHHHHHHHHHHHhcch
Confidence 222 333322 34455555566666666666666666555554 445666655445 5666666655555544333
Q ss_pred -ccCCcchHHHHHHHHhhcCC
Q 040319 573 -IEPTSEHYASLVSVLGYWGF 592 (812)
Q Consensus 573 -~~p~~~~y~~li~~l~~~g~ 592 (812)
..|...+-..+++-|+=.+.
T Consensus 505 ~qe~~~~~~~~~v~RY~~~d~ 525 (656)
T KOG1914|consen 505 DQEYEGNETALFVDRYGILDL 525 (656)
T ss_pred hhcCCCChHHHHHHHHhhccc
Confidence 33333334444444443333
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.0015 Score=68.41 Aligned_cols=242 Identities=12% Similarity=0.028 Sum_probs=147.2
Q ss_pred HHHHHHHcCChhhHHHHHHHhcccCCCCCChhhHH-HHHHHhcCccchHHHHHHHHHHHHhCCCC--c----hhHHHHHH
Q 040319 408 MICGYARSGKPEHAILLFHQSQSEATVVPDEIALT-SVLGVCGTLGFHEMGKQIHSYALKTGFSS--D----LGVANSMV 480 (812)
Q Consensus 408 li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~-~ll~a~~~~~~~~~a~~~~~~~~~~g~~~--~----~~~~~~Li 480 (812)
+.....+..++..|++-+..... +. ...||. ..-.++...|........-...++.|.+. + .....-+.
T Consensus 230 lgnaaykkk~f~~a~q~y~~a~e---l~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g 305 (539)
T KOG0548|consen 230 LGNAAYKKKDFETAIQHYAKALE---LA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLG 305 (539)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHh---Hh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhh
Confidence 44444455556666666655554 33 333333 22334445554444444333333333210 0 11112244
Q ss_pred HHhhhcCCHHHHHHHHccCCC--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH-HHHHHHHhcCCCCchH
Q 040319 481 SMYFKCCNMSNAIKAFNKMPS--HDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDAIT-FVLIISAYRYTNLNLV 557 (812)
Q Consensus 481 ~~y~k~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t-~~~ll~a~~~~~~g~~ 557 (812)
..|.+.++.+.|...|.+... ++.. ...+....+++++..+...- +.|+... ...=...+-+ .|++
T Consensus 306 ~a~~k~~~~~~ai~~~~kaLte~Rt~~-------~ls~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk--~gdy 374 (539)
T KOG0548|consen 306 NAYTKREDYEGAIKYYQKALTEHRTPD-------LLSKLKEAEKALKEAERKAY--INPEKAEEEREKGNEAFK--KGDY 374 (539)
T ss_pred hhhhhHHhHHHHHHHHHHHhhhhcCHH-------HHHHHHHHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHh--ccCH
Confidence 578888999999999987543 2211 12233455666666666555 5666521 1111333445 7999
Q ss_pred HHHHHHHHHhhhhcCccCCcchHHHHHHHHhhcCChHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 040319 558 DSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLEEAEETINNMP-FQPK-VSVWRALLDSCRIRLNTTIGKRVAKHI 635 (812)
Q Consensus 558 ~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~ 635 (812)
..|...+.++.+.. +-|...|+.-.-+|.+.|.+.+|+.=.+... ..|+ ...|.-=..++....+++.|...+++.
T Consensus 375 ~~Av~~YteAIkr~--P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~ea 452 (539)
T KOG0548|consen 375 PEAVKHYTEAIKRD--PEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEA 452 (539)
T ss_pred HHHHHHHHHHHhcC--CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988632 3357889999999999999999988766533 5554 334444455566678999999999999
Q ss_pred HccCCCCCchHHHHHhhhhhCCCcchHHHHH
Q 040319 636 LAMEPQDPATYILVSNLYSSSGRWHNSELVR 666 (812)
Q Consensus 636 ~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~ 666 (812)
++++|++..+...+..++......+...++.
T Consensus 453 le~dp~~~e~~~~~~rc~~a~~~~~~~ee~~ 483 (539)
T KOG0548|consen 453 LELDPSNAEAIDGYRRCVEAQRGDETPEETK 483 (539)
T ss_pred HhcCchhHHHHHHHHHHHHHhhcCCCHHHHH
Confidence 9999999888888888777654444444443
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.00058 Score=70.73 Aligned_cols=144 Identities=16% Similarity=0.103 Sum_probs=112.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH-HhcCCCCchHHHHHHHHHHhhhhcCccCC-cchHHHH
Q 040319 506 SWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDAITFVLIIS-AYRYTNLNLVDSCRKLFLSMKTIYNIEPT-SEHYASL 583 (812)
Q Consensus 506 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~-a~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~l 583 (812)
.+......+...|++++|+..++.++. -.||...|..+.. -+.. .++.++|.+.++.+.. ..|+ ....-.+
T Consensus 308 a~YG~A~~~~~~~~~d~A~~~l~~L~~--~~P~N~~~~~~~~~i~~~--~nk~~~A~e~~~kal~---l~P~~~~l~~~~ 380 (484)
T COG4783 308 AQYGRALQTYLAGQYDEALKLLQPLIA--AQPDNPYYLELAGDILLE--ANKAKEAIERLKKALA---LDPNSPLLQLNL 380 (484)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHH--cCChHHHHHHHHHHHh---cCCCccHHHHHH
Confidence 334444455668899999999999888 7888877776665 3455 8889999999998876 4566 5667778
Q ss_pred HHHHhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCCcch
Q 040319 584 VSVLGYWGFLEEAEETINNMP--FQPKVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWHN 661 (812)
Q Consensus 584 i~~l~~~g~~~~A~~~~~~m~--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~ 661 (812)
.++|.+.|+..+|+..++... .+-|+..|.-|..+|...|+..++..+. +..|+-.|+|++
T Consensus 381 a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~-----------------AE~~~~~G~~~~ 443 (484)
T COG4783 381 AQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLAR-----------------AEGYALAGRLEQ 443 (484)
T ss_pred HHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHH-----------------HHHHHhCCCHHH
Confidence 889999999999999988865 3347889999999999999988777654 456778899999
Q ss_pred HHHHHHHHHhCC
Q 040319 662 SELVREDMREKG 673 (812)
Q Consensus 662 a~~~~~~m~~~g 673 (812)
|.......+++.
T Consensus 444 A~~~l~~A~~~~ 455 (484)
T COG4783 444 AIIFLMRASQQV 455 (484)
T ss_pred HHHHHHHHHHhc
Confidence 999988887653
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.00014 Score=69.22 Aligned_cols=134 Identities=13% Similarity=0.072 Sum_probs=103.3
Q ss_pred CCCCHHHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCCcchHHHHHHHHhhcCChHHHHHHHHhCC--CCCCHHHH
Q 040319 535 IKPDAITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLEEAEETINNMP--FQPKVSVW 612 (812)
Q Consensus 535 ~~pd~~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~--~~p~~~~~ 612 (812)
..|+......+-.++.. .|+-+.+..+....... -..+.......+....+.|++.+|...+++.. -+||...|
T Consensus 62 ~~p~d~~i~~~a~a~~~--~G~a~~~l~~~~~~~~~--~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~ 137 (257)
T COG5010 62 RNPEDLSIAKLATALYL--RGDADSSLAVLQKSAIA--YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAW 137 (257)
T ss_pred cCcchHHHHHHHHHHHh--cccccchHHHHhhhhcc--CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhh
Confidence 45544333444445555 67777777776665431 22334455668888999999999999999865 45578899
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCCcchHHHHHHHHHhC
Q 040319 613 RALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWHNSELVREDMREK 672 (812)
Q Consensus 613 ~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 672 (812)
+.+..+|-+.|+++.|+..+.+++++.|.++.++..|+-.|.-.|+.++|..++......
T Consensus 138 ~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~ 197 (257)
T COG5010 138 NLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLS 197 (257)
T ss_pred hHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999999999998877543
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.00023 Score=80.78 Aligned_cols=136 Identities=14% Similarity=0.102 Sum_probs=97.8
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCC-cchH
Q 040319 503 DIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDA-ITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPT-SEHY 580 (812)
Q Consensus 503 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y 580 (812)
++..+-.|.....+.|++++|..+++...+ +.||. .....+...+.+ .+.+++|...+++... ..|+ ..+.
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~--~~~~eeA~~~~~~~l~---~~p~~~~~~ 157 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKR--QQGIEAGRAEIELYFS---GGSSSAREI 157 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHH--hccHHHHHHHHHHHhh---cCCCCHHHH
Confidence 356666677777778888888888888887 77876 445555666666 7788888888777765 3454 5667
Q ss_pred HHHHHHHhhcCChHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCch
Q 040319 581 ASLVSVLGYWGFLEEAEETINNMP-FQPK-VSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPAT 645 (812)
Q Consensus 581 ~~li~~l~~~g~~~~A~~~~~~m~-~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 645 (812)
..+..++.+.|++++|.++|++.. ..|+ ..+|.++..++...|+.+.|..+++++++...+-...
T Consensus 158 ~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~ 224 (694)
T PRK15179 158 LLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARK 224 (694)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHH
Confidence 777778888888888888888755 3443 6677788888888888888888888888765443333
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.00016 Score=81.91 Aligned_cols=131 Identities=11% Similarity=-0.008 Sum_probs=112.7
Q ss_pred CCCCHHHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCC-cchHHHHHHHHhhcCChHHHHHHHHhCC-CCCCHH-H
Q 040319 535 IKPDAITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPT-SEHYASLVSVLGYWGFLEEAEETINNMP-FQPKVS-V 611 (812)
Q Consensus 535 ~~pd~~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p~~~-~ 611 (812)
...+...+..|...-.+ .|.+++|..+++...+ +.|+ ......++..|.+.+++++|+..+++.. ..|+.. .
T Consensus 82 ~~~~~~~~~~La~i~~~--~g~~~ea~~~l~~~~~---~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~ 156 (694)
T PRK15179 82 YPHTELFQVLVARALEA--AHRSDEGLAVWRGIHQ---RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSARE 156 (694)
T ss_pred ccccHHHHHHHHHHHHH--cCCcHHHHHHHHHHHh---hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHH
Confidence 44556777777777777 9999999999999987 6787 6677889999999999999999999965 778654 5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCCcchHHHHHHHHH
Q 040319 612 WRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWHNSELVREDMR 670 (812)
Q Consensus 612 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 670 (812)
...+..++...|..++|..+|++++...|+++.++..++..+-+.|+.++|...+++.-
T Consensus 157 ~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~ 215 (694)
T PRK15179 157 ILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGL 215 (694)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 55555567789999999999999999999999999999999999999999999888773
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.00011 Score=77.07 Aligned_cols=124 Identities=14% Similarity=0.120 Sum_probs=103.3
Q ss_pred HHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCCcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHH
Q 040319 540 ITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLEEAEETINNMP-FQP-KVSVWRALLD 617 (812)
Q Consensus 540 ~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~ 617 (812)
.-..+++..+.. .+.++.|.++|+++.+. +++....|+.++...++-.+|.+++++.. ..| |...+.....
T Consensus 170 yLv~~Ll~~l~~--t~~~~~ai~lle~L~~~-----~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~ 242 (395)
T PF09295_consen 170 YLVDTLLKYLSL--TQRYDEAIELLEKLRER-----DPEVAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAE 242 (395)
T ss_pred HHHHHHHHHHhh--cccHHHHHHHHHHHHhc-----CCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 334556667777 78899999999999873 34456678888888899999999998865 445 5556665566
Q ss_pred HHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCCcchHHHHHHHHH
Q 040319 618 SCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWHNSELVREDMR 670 (812)
Q Consensus 618 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 670 (812)
.|...++.+.|..+++++.++.|++...|..|+.+|...|+|++|....+.++
T Consensus 243 fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 243 FLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 68899999999999999999999999999999999999999999999999886
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.0023 Score=62.89 Aligned_cols=249 Identities=16% Similarity=0.122 Sum_probs=175.5
Q ss_pred HHHHHhhhcCCHHHHHHHHccCCCCChhHHHHHH---HHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHH-HHHHhcCCC
Q 040319 478 SMVSMYFKCCNMSNAIKAFNKMPSHDIVSWNGLI---AGHLLHRQGDEALAVWSSMEKASIKPDAITFVL-IISAYRYTN 553 (812)
Q Consensus 478 ~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li---~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~-ll~a~~~~~ 553 (812)
-|...+...|++.+|+.-|....+-|+..|-++. ..|...|+...|+.=+.+.++ .+||-..-.. -...+.+
T Consensus 43 ElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~ARiQRg~vllK-- 118 (504)
T KOG0624|consen 43 ELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAARIQRGVVLLK-- 118 (504)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHHHHHhchhhhh--
Confidence 4556677789999999999999887777777664 578889999999999999999 8998643211 1112234
Q ss_pred CchHHHHHHHHHHhhhhcCccCC----cc----------hHH--HHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHH
Q 040319 554 LNLVDSCRKLFLSMKTIYNIEPT----SE----------HYA--SLVSVLGYWGFLEEAEETINNMP-FQP-KVSVWRAL 615 (812)
Q Consensus 554 ~g~~~~a~~~~~~m~~~~~~~p~----~~----------~y~--~li~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~l 615 (812)
.|.+++|..=|+..... .|+ .+ +|. .++..+...|+...|++++..+. +.| |+..+..-
T Consensus 119 ~Gele~A~~DF~~vl~~---~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~R 195 (504)
T KOG0624|consen 119 QGELEQAEADFDQVLQH---EPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQAR 195 (504)
T ss_pred cccHHHHHHHHHHHHhc---CCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHH
Confidence 89999999999988762 232 22 222 23344566789999999998865 666 77777777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCCcchHHHHHHHHHhCCCCCCCceeEEEECCEEEEEeeC
Q 040319 616 LDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWHNSELVREDMREKGFRKHPSRSWIIHQNKVHSFYVR 695 (812)
Q Consensus 616 l~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~~~~f~~~ 695 (812)
..+|...|.+..|+.-++.+-++..+++..++-++.+|...|+.+++...+++..+- +|
T Consensus 196 akc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl----dp----------------- 254 (504)
T KOG0624|consen 196 AKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKL----DP----------------- 254 (504)
T ss_pred HHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc----Cc-----------------
Confidence 778888999999999999999999999999999999999999999999887776332 22
Q ss_pred CCCCcchHHHHHHHHHHHHHHHHcCcccCCCccccccchhhhhhhhhhhhHHHHHHHhhcCCCCC-CcEEEEcccccc
Q 040319 696 DKSHPREKDIYSGLEILILECLKAGYVPDTSFVLHEVEEHQKKDFLFYHSAKLAATYGLLTTPAG-QPVRIVKNILTC 772 (812)
Q Consensus 696 ~~~~~~~~~i~~~l~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~hse~la~~~~~~~~~~~-~~~~~~~n~~~c 772 (812)
.|...---|.+|..+.+.+...- +..++ ..-.+-|+-.=.++.+.|. .+||+----++|
T Consensus 255 --dHK~Cf~~YKklkKv~K~les~e--------------~~ie~--~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c 314 (504)
T KOG0624|consen 255 --DHKLCFPFYKKLKKVVKSLESAE--------------QAIEE--KHWTECLEAGEKVLKNEPEETMIRYNGFRVLC 314 (504)
T ss_pred --chhhHHHHHHHHHHHHHHHHHHH--------------HHHhh--hhHHHHHHHHHHHHhcCCcccceeeeeeheee
Confidence 35444445666666555553321 00000 1124555555566766555 778765555555
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.01 E-value=1e-05 Score=52.64 Aligned_cols=35 Identities=46% Similarity=0.817 Sum_probs=32.8
Q ss_pred ccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCH
Q 040319 300 VSYNALLAGYCKNGKAMEALGLFVKLLEEGLVLTE 334 (812)
Q Consensus 300 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 334 (812)
++||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999983
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.00032 Score=72.14 Aligned_cols=184 Identities=9% Similarity=0.025 Sum_probs=132.6
Q ss_pred HHHHhhhcCCHHHHHHHHccCCC---CChhHHHHHHHHHHhcC-ChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcCCC
Q 040319 479 MVSMYFKCCNMSNAIKAFNKMPS---HDIVSWNGLIAGHLLHR-QGDEALAVWSSMEKASIKPDA-ITFVLIISAYRYTN 553 (812)
Q Consensus 479 Li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g-~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~~ 553 (812)
+-..+.+.+..++|+.+.+++.+ .+...|+.-...+...| ++++++..++++.+ ..|+. .++..--..+..
T Consensus 43 ~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~--~npknyqaW~~R~~~l~~-- 118 (320)
T PLN02789 43 FRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAE--DNPKNYQIWHHRRWLAEK-- 118 (320)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHH--HCCcchHHhHHHHHHHHH--
Confidence 34445566778888888887665 34567777666777777 57999999999998 56665 334433223333
Q ss_pred Cch--HHHHHHHHHHhhhhcCccC-CcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhc---CC-
Q 040319 554 LNL--VDSCRKLFLSMKTIYNIEP-TSEHYASLVSVLGYWGFLEEAEETINNMP-FQP-KVSVWRALLDSCRIR---LN- 624 (812)
Q Consensus 554 ~g~--~~~a~~~~~~m~~~~~~~p-~~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~---~~- 624 (812)
.|. .+++..+++.+.+ +.| +...|+...-++.+.|++++|++.++++. ..| |..+|+......... |.
T Consensus 119 l~~~~~~~el~~~~kal~---~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~ 195 (320)
T PLN02789 119 LGPDAANKELEFTRKILS---LDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGL 195 (320)
T ss_pred cCchhhHHHHHHHHHHHH---hCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccc
Confidence 444 3677888888775 345 46788888889999999999999999975 445 677888877766554 22
Q ss_pred ---HHHHHHHHHHHHccCCCCCchHHHHHhhhhhC----CCcchHHHHHHHH
Q 040319 625 ---TTIGKRVAKHILAMEPQDPATYILVSNLYSSS----GRWHNSELVREDM 669 (812)
Q Consensus 625 ---~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~----g~~~~a~~~~~~m 669 (812)
.+......+++++++|+|..+|..+..+|... ++..+|.++....
T Consensus 196 ~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~ 247 (320)
T PLN02789 196 EAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEV 247 (320)
T ss_pred cccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHh
Confidence 24667778899999999999999999999883 3445676666553
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=97.99 E-value=4.5e-05 Score=68.37 Aligned_cols=96 Identities=18% Similarity=0.213 Sum_probs=80.4
Q ss_pred cchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhh
Q 040319 577 SEHYASLVSVLGYWGFLEEAEETINNMP-FQP-KVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYS 654 (812)
Q Consensus 577 ~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~ 654 (812)
......++..+...|++++|.+.++... ..| +...|..+...+...|+.+.|...++++++++|+++..+..++.+|.
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~ 96 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLL 96 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 4556677777888888888888888754 445 66788888888888999999999999999999999999999999999
Q ss_pred hCCCcchHHHHHHHHHhC
Q 040319 655 SSGRWHNSELVREDMREK 672 (812)
Q Consensus 655 ~~g~~~~a~~~~~~m~~~ 672 (812)
..|++++|.+.++...+.
T Consensus 97 ~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 97 ALGEPESALKALDLAIEI 114 (135)
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 999999999999887543
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00029 Score=80.61 Aligned_cols=240 Identities=8% Similarity=0.006 Sum_probs=138.3
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCCce-eeeHHHHHHHHHcCChhhHHHHHHHhcccCCCCCChhhHHHHHH
Q 040319 368 NDCIEAALLDMLTRCGRMADAEKMFYRWPTDRDDS-IIWTSMICGYARSGKPEHAILLFHQSQSEATVVPDEIALTSVLG 446 (812)
Q Consensus 368 ~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~ 446 (812)
+...+..|+..|...+++++|..+.+......|+. ..|-.+...+.+.++..++..+ .++.
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv------------------~~l~ 91 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL------------------NLID 91 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh------------------hhhh
Confidence 45666777777777777777777776544233322 2333333345555554444433 2222
Q ss_pred HhcCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHhhhcCCHHHHHHHHccCCC---CChhHHHHHHHHHHhcCChHHH
Q 040319 447 VCGTLGFHEMGKQIHSYALKTGFSSDLGVANSMVSMYFKCCNMSNAIKAFNKMPS---HDIVSWNGLIAGHLLHRQGDEA 523 (812)
Q Consensus 447 a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A 523 (812)
......++.....+...+... ..+...+..|..+|-+.|+.++|..+++++.+ .|+...|.+...|+.. +.++|
T Consensus 92 ~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA 168 (906)
T PRK14720 92 SFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKA 168 (906)
T ss_pred hcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHH
Confidence 223333333333444444442 23344666677777777777777777776655 4566667777777766 77777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCC-cchHHHHHHHHhhcCChHHHHHHHHh
Q 040319 524 LAVWSSMEKASIKPDAITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPT-SEHYASLVSVLGYWGFLEEAEETINN 602 (812)
Q Consensus 524 ~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g~~~~A~~~~~~ 602 (812)
++++.+..+. +.. .+++.++.+++..+.. ..|+ .+.+--+.......
T Consensus 169 ~~m~~KAV~~---------------~i~--~kq~~~~~e~W~k~~~---~~~~d~d~f~~i~~ki~~~------------ 216 (906)
T PRK14720 169 ITYLKKAIYR---------------FIK--KKQYVGIEEIWSKLVH---YNSDDFDFFLRIERKVLGH------------ 216 (906)
T ss_pred HHHHHHHHHH---------------HHh--hhcchHHHHHHHHHHh---cCcccchHHHHHHHHHHhh------------
Confidence 7777776652 222 4456666666666654 1222 22211111111111
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCCcchH
Q 040319 603 MPFQPKVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWHNS 662 (812)
Q Consensus 603 m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a 662 (812)
....--..+|--+-.-|+..++.+.+..+++.+++.+|+|..+..-++..|. +++.+-
T Consensus 217 ~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~--~kY~~~ 274 (906)
T PRK14720 217 REFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK--EKYKDH 274 (906)
T ss_pred hccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH--HHccCc
Confidence 1112223345555567788899999999999999999999998888888887 544443
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.92 E-value=1.8e-05 Score=51.05 Aligned_cols=34 Identities=24% Similarity=0.475 Sum_probs=31.1
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 040319 504 IVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKP 537 (812)
Q Consensus 504 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 537 (812)
+.+||++|.+|++.|+++.|.++|++|.+.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3689999999999999999999999999999988
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00035 Score=66.49 Aligned_cols=150 Identities=15% Similarity=0.125 Sum_probs=82.5
Q ss_pred HHHHhhhcCCHHHHHHHHccCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcCCCC
Q 040319 479 MVSMYFKCCNMSNAIKAFNKMPS---HDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDA-ITFVLIISAYRYTNL 554 (812)
Q Consensus 479 Li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~~~ 554 (812)
+-..|.-.|+-+.+..+...... .|....+..+....+.|++.+|+..|++... ..|+. .+++.+-.+|-+ .
T Consensus 72 ~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq--~ 147 (257)
T COG5010 72 LATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQ--L 147 (257)
T ss_pred HHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHH--c
Confidence 33444445555555555444322 3333444456666666666666666666665 33333 555555555655 6
Q ss_pred chHHHHHHHHHHhhhhcCccCC-cchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHH
Q 040319 555 NLVDSCRKLFLSMKTIYNIEPT-SEHYASLVSVLGYWGFLEEAEETINNMP-FQP-KVSVWRALLDSCRIRLNTTIGKRV 631 (812)
Q Consensus 555 g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~ 631 (812)
|+.++|..-|.+..+ +.|+ +..++.|.-.|.-.|+++.|..++.... ..+ |..+-..|.-+-...|+++.|+.+
T Consensus 148 Gr~~~Ar~ay~qAl~---L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i 224 (257)
T COG5010 148 GRFDEARRAYRQALE---LAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDI 224 (257)
T ss_pred cChhHHHHHHHHHHH---hccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhh
Confidence 666666666665554 2332 4455666666666666666666665543 222 455555566666666666666665
Q ss_pred HHHH
Q 040319 632 AKHI 635 (812)
Q Consensus 632 ~~~~ 635 (812)
..+-
T Consensus 225 ~~~e 228 (257)
T COG5010 225 AVQE 228 (257)
T ss_pred cccc
Confidence 5543
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00078 Score=69.79 Aligned_cols=175 Identities=14% Similarity=0.111 Sum_probs=126.3
Q ss_pred CHHHHHHHHccCCC------CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCchHHHHH
Q 040319 488 NMSNAIKAFNKMPS------HDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDAITFVLIISAYRYTNLNLVDSCR 561 (812)
Q Consensus 488 ~~~~A~~~f~~~~~------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~g~~~~a~ 561 (812)
++.+++..-+.++. |+.......+.+.........+-.++ -+... -.-...-|..-+..+ . .|..++|+
T Consensus 252 RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~-~~~~~-~~~~aa~YG~A~~~~-~--~~~~d~A~ 326 (484)
T COG4783 252 RIADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQAADLL-AKRSK-RGGLAAQYGRALQTY-L--AGQYDEAL 326 (484)
T ss_pred HHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccchHHHH-HHHhC-ccchHHHHHHHHHHH-H--hcccchHH
Confidence 34444444444443 45555555555443322222222222 22221 011223344444433 3 68999999
Q ss_pred HHHHHhhhhcCccCCcchHHHHHHHHhhcCChHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHccC
Q 040319 562 KLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLEEAEETINNMP-FQPK-VSVWRALLDSCRIRLNTTIGKRVAKHILAME 639 (812)
Q Consensus 562 ~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 639 (812)
..++.+.+. .+-++..+....+.+.+.++.++|.+.++++. ..|+ ...|-.+..++.+.|+..+|+.+++....-+
T Consensus 327 ~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~ 404 (484)
T COG4783 327 KLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFND 404 (484)
T ss_pred HHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcC
Confidence 999998763 33446777888999999999999999999976 7786 6788889999999999999999999999999
Q ss_pred CCCCchHHHHHhhhhhCCCcchHHHHHHHH
Q 040319 640 PQDPATYILVSNLYSSSGRWHNSELVREDM 669 (812)
Q Consensus 640 p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 669 (812)
|+|+..|..|+..|...|+-.+|..-+.++
T Consensus 405 p~dp~~w~~LAqay~~~g~~~~a~~A~AE~ 434 (484)
T COG4783 405 PEDPNGWDLLAQAYAELGNRAEALLARAEG 434 (484)
T ss_pred CCCchHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 999999999999999999999999988876
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.83 E-value=2.9e-05 Score=50.06 Aligned_cols=33 Identities=30% Similarity=0.637 Sum_probs=29.4
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 040319 65 VSFTSLISGLAKLGREEEAIELFFRMRSEGIVP 97 (812)
Q Consensus 65 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 97 (812)
.+||.+|.+|++.|+++.|+++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578999999999999999999999999988887
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.0067 Score=57.95 Aligned_cols=152 Identities=14% Similarity=0.072 Sum_probs=87.3
Q ss_pred HHHHhhhcCCHHHHHHHHccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCchHH
Q 040319 479 MVSMYFKCCNMSNAIKAFNKMPSHDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDAITFVLIISAYRYTNLNLVD 558 (812)
Q Consensus 479 Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~g~~~ 558 (812)
-...|.+.|++++|.+.......-+....|. ..+.+..+.+-|.+.+++|.+ +. +..|.+-|..++
T Consensus 114 aa~i~~~~~~~deAl~~~~~~~~lE~~Al~V--qI~lk~~r~d~A~~~lk~mq~--id-ed~tLtQLA~aw--------- 179 (299)
T KOG3081|consen 114 AAIIYMHDGDFDEALKALHLGENLEAAALNV--QILLKMHRFDLAEKELKKMQQ--ID-EDATLTQLAQAW--------- 179 (299)
T ss_pred hhHHhhcCCChHHHHHHHhccchHHHHHHHH--HHHHHHHHHHHHHHHHHHHHc--cc-hHHHHHHHHHHH---------
Confidence 3445666666666666665533222222222 223344455566666666655 21 223333333332
Q ss_pred HHHHHHHHhhhhcCccCCcchHHHHHHHHhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 040319 559 SCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLEEAEETINNMP--FQPKVSVWRALLDSCRIRLNTTIGKRVAKHIL 636 (812)
Q Consensus 559 ~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 636 (812)
|....-.+.+.+|.-+|++|. ..|+..+.+....+|...|++++|+.+.+.++
T Consensus 180 -------------------------v~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL 234 (299)
T KOG3081|consen 180 -------------------------VKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEAL 234 (299)
T ss_pred -------------------------HHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHH
Confidence 222223334555555666554 45677777777777778888888888888888
Q ss_pred ccCCCCCchHHHHHhhhhhCCCcchHH-HHHHHH
Q 040319 637 AMEPQDPATYILVSNLYSSSGRWHNSE-LVREDM 669 (812)
Q Consensus 637 ~~~p~~~~~~~~l~~~y~~~g~~~~a~-~~~~~m 669 (812)
.-+|+++.+...++-.--..|+-.++. +.....
T Consensus 235 ~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QL 268 (299)
T KOG3081|consen 235 DKDAKDPETLANLIVLALHLGKDAEVTERNLSQL 268 (299)
T ss_pred hccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHH
Confidence 888888777777766666667665553 334444
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.69 E-value=4.6e-05 Score=47.85 Aligned_cols=31 Identities=39% Similarity=0.521 Sum_probs=27.5
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 040319 505 VSWNGLIAGHLLHRQGDEALAVWSSMEKASI 535 (812)
Q Consensus 505 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 535 (812)
++||+||.+|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4799999999999999999999999998774
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00059 Score=61.07 Aligned_cols=114 Identities=10% Similarity=0.053 Sum_probs=83.4
Q ss_pred HHHHHHHCCCCCCHH-HHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCCcchHHHHHHHHhhcCChHHHHHHHHhCC
Q 040319 526 VWSSMEKASIKPDAI-TFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLEEAEETINNMP 604 (812)
Q Consensus 526 l~~~m~~~g~~pd~~-t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~ 604 (812)
+|++.++ ..|+.. ....+...+.. .|++++|.+.|+.+... -+.+...|..+...+.+.|++++|...+++..
T Consensus 5 ~~~~~l~--~~p~~~~~~~~~a~~~~~--~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 78 (135)
T TIGR02552 5 TLKDLLG--LDSEQLEQIYALAYNLYQ--QGRYDEALKLFQLLAAY--DPYNSRYWLGLAACCQMLKEYEEAIDAYALAA 78 (135)
T ss_pred hHHHHHc--CChhhHHHHHHHHHHHHH--cccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555 566553 34444445556 78888888888887652 12356778888888888888888888888753
Q ss_pred -CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCch
Q 040319 605 -FQP-KVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPAT 645 (812)
Q Consensus 605 -~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 645 (812)
..| +...|..+...+...|+.+.|...++++++++|++...
T Consensus 79 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 121 (135)
T TIGR02552 79 ALDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEY 121 (135)
T ss_pred hcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchH
Confidence 445 56777777888889999999999999999999987653
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00027 Score=58.32 Aligned_cols=93 Identities=15% Similarity=0.148 Sum_probs=77.9
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhC
Q 040319 579 HYASLVSVLGYWGFLEEAEETINNMP-FQP-KVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSS 656 (812)
Q Consensus 579 ~y~~li~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~ 656 (812)
.|..+...+.+.|++++|...+++.. ..| +...|..+...+...++.+.|...++++++..|.++..+..++.+|...
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 35567778888899999999988854 445 4467777777888889999999999999999999888999999999999
Q ss_pred CCcchHHHHHHHHHh
Q 040319 657 GRWHNSELVREDMRE 671 (812)
Q Consensus 657 g~~~~a~~~~~~m~~ 671 (812)
|++++|.+.+....+
T Consensus 82 ~~~~~a~~~~~~~~~ 96 (100)
T cd00189 82 GKYEEALEAYEKALE 96 (100)
T ss_pred HhHHHHHHHHHHHHc
Confidence 999999998887643
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00083 Score=70.47 Aligned_cols=126 Identities=16% Similarity=0.112 Sum_probs=100.7
Q ss_pred HHHHHHHHhhhcCCHHHHHHHHccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcCCC
Q 040319 475 VANSMVSMYFKCCNMSNAIKAFNKMPSHDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDA-ITFVLIISAYRYTN 553 (812)
Q Consensus 475 ~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~~ 553 (812)
.-.+|+..+...++++.|..+|+++.+.++..+..|+..+...++-.+|++++++.++ ..|+. .....-...|..
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~--~~p~d~~LL~~Qa~fLl~-- 246 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALK--ENPQDSELLNLQAEFLLS-- 246 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHh--
Confidence 3345667777789999999999999886666667788888888999999999999997 56655 333333334666
Q ss_pred CchHHHHHHHHHHhhhhcCccCC-cchHHHHHHHHhhcCChHHHHHHHHhCCCCC
Q 040319 554 LNLVDSCRKLFLSMKTIYNIEPT-SEHYASLVSVLGYWGFLEEAEETINNMPFQP 607 (812)
Q Consensus 554 ~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g~~~~A~~~~~~m~~~p 607 (812)
.++++.|.++.+++.+ ..|+ -.+|..|+.+|...|++++|+..++.+|+-|
T Consensus 247 k~~~~lAL~iAk~av~---lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~ 298 (395)
T PF09295_consen 247 KKKYELALEIAKKAVE---LSPSEFETWYQLAECYIQLGDFENALLALNSCPMLT 298 (395)
T ss_pred cCCHHHHHHHHHHHHH---hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCC
Confidence 8899999999999886 5676 5699999999999999999999999998443
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.003 Score=59.76 Aligned_cols=160 Identities=12% Similarity=0.085 Sum_probs=109.4
Q ss_pred HHHHhhhcCCHHHHHHHHccCCC--CCh---hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCC
Q 040319 479 MVSMYFKCCNMSNAIKAFNKMPS--HDI---VSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDAITFVLIISAYRYTN 553 (812)
Q Consensus 479 Li~~y~k~g~~~~A~~~f~~~~~--~~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~ 553 (812)
++-+..-+|+.+.|...++.+.. |+. .-..+| -+-..|++++|+++++..++.+ +.|.+++..=+...-.
T Consensus 58 V~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam--~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka-- 132 (289)
T KOG3060|consen 58 VFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAM--LLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKA-- 132 (289)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHH--HHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHH--
Confidence 33444556777777777666544 221 222222 2345788999999999998854 3334666544444434
Q ss_pred CchHHHHHHHHHHhhhhcCccCCcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcC---CHHHH
Q 040319 554 LNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLEEAEETINNMP-FQP-KVSVWRALLDSCRIRL---NTTIG 628 (812)
Q Consensus 554 ~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~---~~~~a 628 (812)
.|.--+|++-+....+ .+..|.+.|.-+.++|...|++++|.--++++. +.| ++..+..+.......| |++.+
T Consensus 133 ~GK~l~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~a 210 (289)
T KOG3060|consen 133 QGKNLEAIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELA 210 (289)
T ss_pred cCCcHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHH
Confidence 6666688877777665 356788999999999999999999998888865 667 5566666666654443 77888
Q ss_pred HHHHHHHHccCCCCCch
Q 040319 629 KRVAKHILAMEPQDPAT 645 (812)
Q Consensus 629 ~~~~~~~~~~~p~~~~~ 645 (812)
.+.+++++++.|.+...
T Consensus 211 rkyy~~alkl~~~~~ra 227 (289)
T KOG3060|consen 211 RKYYERALKLNPKNLRA 227 (289)
T ss_pred HHHHHHHHHhChHhHHH
Confidence 99999999999865443
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.59 E-value=8.7e-05 Score=46.59 Aligned_cols=31 Identities=48% Similarity=0.929 Sum_probs=27.0
Q ss_pred ccHHHHHHHHHhCCChHHHHHHHHHHHHcCC
Q 040319 300 VSYNALLAGYCKNGKAMEALGLFVKLLEEGL 330 (812)
Q Consensus 300 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 330 (812)
++||+||++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4789999999999999999999999988774
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.22 Score=56.01 Aligned_cols=213 Identities=15% Similarity=0.102 Sum_probs=99.0
Q ss_pred cCCChhHHHHHHHHhHhcCCCCCCcchHHHHHHHH--hcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHH
Q 040319 178 NEFEYEKAFELFRDMKRDNGFTVDYFTISTLLTAC--TGCFVLMEGRAVHAHAIRIGLGANLSVNNALIGFYTKCGRVKD 255 (812)
Q Consensus 178 ~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~--~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 255 (812)
..+++..|+.....+.++. |+. .|..++.++ .+.|..++|..+++.....+.. |..+...+-.+|-..|+.++
T Consensus 21 d~~qfkkal~~~~kllkk~---Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~ 95 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKH---PNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDE 95 (932)
T ss_pred hhHHHHHHHHHHHHHHHHC---CCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhH
Confidence 3455666666665553332 222 233444443 3556666666555554443322 56666666666666666666
Q ss_pred HHHHHhcCCC--CcchhHHHHHHHHHhhCChh----HHHHHhccCCCCCcccHHHHHHHHHhC-CCh---------HHHH
Q 040319 256 VVALLERMPV--MDIITLTEIIIAYMEFGYVD----LAVEIFDKMPEKNSVSYNALLAGYCKN-GKA---------MEAL 319 (812)
Q Consensus 256 A~~l~~~~~~--~~~~~~~~li~~~~~~g~~~----~A~~~f~~m~~~d~~~~~~li~~~~~~-g~~---------~~A~ 319 (812)
|..++++... |+......+..+|.+.+.+. .|++++...+++--.-|+. ++.+.+. ... .-|.
T Consensus 96 ~~~~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV-~Slilqs~~~~~~~~~~i~l~LA~ 174 (932)
T KOG2053|consen 96 AVHLYERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSV-ISLILQSIFSENELLDPILLALAE 174 (932)
T ss_pred HHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHH-HHHHHHhccCCcccccchhHHHHH
Confidence 6666666643 33333444445555554442 3555666555443334443 2322221 111 1234
Q ss_pred HHHHHHHHcC-CCCCHhHHHHHHHHhccchhhhhHHHHHh-hHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC
Q 040319 320 GLFVKLLEEG-LVLTEFTLTSVVNACGLIMEAKLSEQIHG-FVMKFGLGSNDCIEAALLDMLTRCGRMADAEKMFYRWP 396 (812)
Q Consensus 320 ~l~~~m~~~g-~~p~~~t~~~ll~a~~~~~~~~~a~~i~~-~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~ 396 (812)
+.++.+.+.+ -.-+..-.-.-+......+..++|..++. .....-..-+...-+--++.+.+++++.+..++-.++.
T Consensus 175 ~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll 253 (932)
T KOG2053|consen 175 KMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLL 253 (932)
T ss_pred HHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 4444444433 11111111111122233445555555552 22222223344444555666666666666555544443
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00032 Score=70.61 Aligned_cols=88 Identities=9% Similarity=-0.045 Sum_probs=73.7
Q ss_pred HHHHhhcCChHHHHHHHHhCC-CCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCC
Q 040319 584 VSVLGYWGFLEEAEETINNMP-FQP-----KVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSG 657 (812)
Q Consensus 584 i~~l~~~g~~~~A~~~~~~m~-~~p-----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g 657 (812)
.+-..+.|++.+|.+.+.+.. +.| ++..|.....+..+.|+.++|..-.+.+++++|.-..+|..-+++|-..+
T Consensus 256 gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le 335 (486)
T KOG0550|consen 256 GNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALE 335 (486)
T ss_pred hhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHH
Confidence 345678899999999998854 444 45566666666778999999999999999999999999999999999999
Q ss_pred CcchHHHHHHHHHh
Q 040319 658 RWHNSELVREDMRE 671 (812)
Q Consensus 658 ~~~~a~~~~~~m~~ 671 (812)
+|++|.+-+++.-+
T Consensus 336 ~~e~AV~d~~~a~q 349 (486)
T KOG0550|consen 336 KWEEAVEDYEKAMQ 349 (486)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999888754
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0021 Score=70.77 Aligned_cols=61 Identities=11% Similarity=0.133 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCCcchHHHHHHHHH
Q 040319 609 VSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWHNSELVREDMR 670 (812)
Q Consensus 609 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 670 (812)
+.++.++.-.....|+.++|...++++++++| +..+|..++.+|...|+.++|.+.+++..
T Consensus 420 ~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~ 480 (517)
T PRK10153 420 PRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAF 480 (517)
T ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34444444444445666666666666666666 34556666666666666666666555543
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00081 Score=70.90 Aligned_cols=86 Identities=9% Similarity=0.006 Sum_probs=58.6
Q ss_pred HHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCCcchHH
Q 040319 586 VLGYWGFLEEAEETINNMP-FQP-KVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWHNSE 663 (812)
Q Consensus 586 ~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~ 663 (812)
.+...|++++|++.+++.. ..| +...|..+..++...|+++.|...++++++++|+++.+|..++.+|...|++++|.
T Consensus 11 ~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~ 90 (356)
T PLN03088 11 EAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAK 90 (356)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHH
Confidence 3445667777777666643 444 45566666666777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHh
Q 040319 664 LVREDMRE 671 (812)
Q Consensus 664 ~~~~~m~~ 671 (812)
..+++..+
T Consensus 91 ~~~~~al~ 98 (356)
T PLN03088 91 AALEKGAS 98 (356)
T ss_pred HHHHHHHH
Confidence 77766543
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00017 Score=55.62 Aligned_cols=64 Identities=11% Similarity=0.144 Sum_probs=57.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCC-CcchHHHHHHHHHh
Q 040319 608 KVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSG-RWHNSELVREDMRE 671 (812)
Q Consensus 608 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g-~~~~a~~~~~~m~~ 671 (812)
++.+|..+...+...|+++.|+..++++++++|+++.++..++.+|...| ++++|.+.+++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 46678888888999999999999999999999999999999999999999 79999998887643
|
... |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0009 Score=58.22 Aligned_cols=94 Identities=10% Similarity=0.059 Sum_probs=62.4
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHhCC-CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCC---CchHHHHH
Q 040319 579 HYASLVSVLGYWGFLEEAEETINNMP-FQPK----VSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQD---PATYILVS 650 (812)
Q Consensus 579 ~y~~li~~l~~~g~~~~A~~~~~~m~-~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~ 650 (812)
.+-..+..+.+.|++++|.+.++++. ..|+ ...+..+..++...|+++.|...++.+++..|++ +..+..++
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 44555666666777777777766653 2232 2345556666777777777777777777777664 44577777
Q ss_pred hhhhhCCCcchHHHHHHHHHhC
Q 040319 651 NLYSSSGRWHNSELVREDMREK 672 (812)
Q Consensus 651 ~~y~~~g~~~~a~~~~~~m~~~ 672 (812)
.+|.+.|++++|.+.++.+.+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHH
Confidence 7777777777777777776554
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.015 Score=67.14 Aligned_cols=241 Identities=11% Similarity=0.035 Sum_probs=151.4
Q ss_pred cCCCCCH-hHHHHHHHHhccchhhhhHHHHHhhHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCCceeeeH
Q 040319 328 EGLVLTE-FTLTSVVNACGLIMEAKLSEQIHGFVMKFGLGSNDCIEAALLDMLTRCGRMADAEKMFYRWPTDRDDSIIWT 406 (812)
Q Consensus 328 ~g~~p~~-~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~~ 406 (812)
....|+. ..+..|+..+...++++.+.++.+...+.... ....+-.+...|.+.++.+++..+ .+.
T Consensus 24 ~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~-~i~~yy~~G~l~~q~~~~~~~~lv--~~l---------- 90 (906)
T PRK14720 24 NNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKK-SISALYISGILSLSRRPLNDSNLL--NLI---------- 90 (906)
T ss_pred ccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCc-ceehHHHHHHHHHhhcchhhhhhh--hhh----------
Confidence 3455554 46778888888999999999999966664332 222333333377777777766655 222
Q ss_pred HHHHHHHHcCChhhHHHHHHHhcccCCCCCChhhHHHHHHHhcCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHhhhc
Q 040319 407 SMICGYARSGKPEHAILLFHQSQSEATVVPDEIALTSVLGVCGTLGFHEMGKQIHSYALKTGFSSDLGVANSMVSMYFKC 486 (812)
Q Consensus 407 ~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~ 486 (812)
..+....++.-...+...|.. ..-+...+..+..+|.+.|..+++..+++.+++.. +.|+.+.|-+...|+..
T Consensus 91 ---~~~~~~~~~~~ve~~~~~i~~---~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~ 163 (906)
T PRK14720 91 ---DSFSQNLKWAIVEHICDKILL---YGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE 163 (906)
T ss_pred ---hhcccccchhHHHHHHHHHHh---hhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh
Confidence 222222233222223333333 22334467778888999999999999999999977 56889999999999999
Q ss_pred CCHHHHHHHHccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH-HHHHHHhcCCCCchHHHHHHHHH
Q 040319 487 CNMSNAIKAFNKMPSHDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDAITF-VLIISAYRYTNLNLVDSCRKLFL 565 (812)
Q Consensus 487 g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~-~~ll~a~~~~~~g~~~~a~~~~~ 565 (812)
++++|.+++.+. +..|...+++.++.++|.++.. ..|+.+.+ .-++.....
T Consensus 164 -dL~KA~~m~~KA-----------V~~~i~~kq~~~~~e~W~k~~~--~~~~d~d~f~~i~~ki~~-------------- 215 (906)
T PRK14720 164 -DKEKAITYLKKA-----------IYRFIKKKQYVGIEEIWSKLVH--YNSDDFDFFLRIERKVLG-------------- 215 (906)
T ss_pred -hHHHHHHHHHHH-----------HHHHHhhhcchHHHHHHHHHHh--cCcccchHHHHHHHHHHh--------------
Confidence 999999998764 4447778899999999999998 66776443 222222111
Q ss_pred HhhhhcCccCCcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHH
Q 040319 566 SMKTIYNIEPTSEHYASLVSVLGYWGFLEEAEETINNMP-FQP-KVSVWRALLDSCR 620 (812)
Q Consensus 566 ~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~ 620 (812)
.-+...-+.++--+.+.|-..++++++..+++... ..| |.....-++..|+
T Consensus 216 ----~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 216 ----HREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred ----hhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 11111222333444455555666777777776644 334 3444444444443
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00088 Score=65.15 Aligned_cols=97 Identities=13% Similarity=0.127 Sum_probs=56.0
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCCcchHHHHHHHHhhcCC
Q 040319 514 HLLHRQGDEALAVWSSMEKASIKPDA-ITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGF 592 (812)
Q Consensus 514 ~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~ 592 (812)
+.+.+++++|+..|.+.++ +.|+. +-|..=..||++ .|.++.|++-.+....
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~--Lg~~~~AVkDce~Al~----------------------- 143 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSK--LGEYEDAVKDCESALS----------------------- 143 (304)
T ss_pred HHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHH--hcchHHHHHHHHHHHh-----------------------
Confidence 3455666666666666666 55544 334444445555 5555555555444443
Q ss_pred hHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHH
Q 040319 593 LEEAEETINNMPFQPK-VSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILV 649 (812)
Q Consensus 593 ~~~A~~~~~~m~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 649 (812)
+.|. ..+|..|.-++...|++++|+++|+++++++|++......|
T Consensus 144 ------------iDp~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL 189 (304)
T KOG0553|consen 144 ------------IDPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNESYKSNL 189 (304)
T ss_pred ------------cChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHH
Confidence 3443 34666666666667777777777777777777666444444
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.43 E-value=6.4e-05 Score=60.71 Aligned_cols=77 Identities=14% Similarity=0.203 Sum_probs=45.9
Q ss_pred CChHHHHHHHHhCC-CCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCCcchHHHHH
Q 040319 591 GFLEEAEETINNMP-FQP---KVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWHNSELVR 666 (812)
Q Consensus 591 g~~~~A~~~~~~m~-~~p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~ 666 (812)
|++++|+.+++++. ..| +...|..+..++...|+.+.|..++++ .+.+|.++.....++.+|.+.|++++|.+++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l 81 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKAL 81 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 34444444444432 122 334455556666666666666666666 5666666666667788888888888888777
Q ss_pred HH
Q 040319 667 ED 668 (812)
Q Consensus 667 ~~ 668 (812)
++
T Consensus 82 ~~ 83 (84)
T PF12895_consen 82 EK 83 (84)
T ss_dssp HH
T ss_pred hc
Confidence 64
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0022 Score=58.00 Aligned_cols=84 Identities=12% Similarity=0.068 Sum_probs=43.2
Q ss_pred HHHHhhcCChHHHHHHHHhCC-CCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCC
Q 040319 584 VSVLGYWGFLEEAEETINNMP-FQPKV----SVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGR 658 (812)
Q Consensus 584 i~~l~~~g~~~~A~~~~~~m~-~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~ 658 (812)
...+...|++++|.+.++... ..||. .....|...+...|+++.|...++.. .-.|-.+..+..++++|.+.|+
T Consensus 55 A~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~ 133 (145)
T PF09976_consen 55 AKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQI-PDEAFKALAAELLGDIYLAQGD 133 (145)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhc-cCcchHHHHHHHHHHHHHHCCC
Confidence 344445555555555555433 11221 22333344445555666555555442 2223334556667777777777
Q ss_pred cchHHHHHHH
Q 040319 659 WHNSELVRED 668 (812)
Q Consensus 659 ~~~a~~~~~~ 668 (812)
+++|...+++
T Consensus 134 ~~~A~~~y~~ 143 (145)
T PF09976_consen 134 YDEARAAYQK 143 (145)
T ss_pred HHHHHHHHHH
Confidence 7777776654
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0059 Score=55.24 Aligned_cols=121 Identities=14% Similarity=0.058 Sum_probs=66.8
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCH--HHHHH--HHHHhcCCCCchHHHHHHHHHHhhhhcCccCC--cchHHH
Q 040319 509 GLIAGHLLHRQGDEALAVWSSMEKASIKPDA--ITFVL--IISAYRYTNLNLVDSCRKLFLSMKTIYNIEPT--SEHYAS 582 (812)
Q Consensus 509 ~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~--~t~~~--ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~y~~ 582 (812)
.++..+ ..++...+...++++.+. .|+. ..... +-..+.. .|++++|...|+..... .-.|. ....-.
T Consensus 17 ~~~~~~-~~~~~~~~~~~~~~l~~~--~~~s~ya~~A~l~lA~~~~~--~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~ 90 (145)
T PF09976_consen 17 QALQAL-QAGDPAKAEAAAEQLAKD--YPSSPYAALAALQLAKAAYE--QGDYDEAKAALEKALAN-APDPELKPLARLR 90 (145)
T ss_pred HHHHHH-HCCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHhh-CCCHHHHHHHHHH
Confidence 334433 356666666666666663 3333 11222 2233444 66777777777666652 21121 123334
Q ss_pred HHHHHhhcCChHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 040319 583 LVSVLGYWGFLEEAEETINNMPFQP-KVSVWRALLDSCRIRLNTTIGKRVAKHI 635 (812)
Q Consensus 583 li~~l~~~g~~~~A~~~~~~m~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 635 (812)
+..++...|++++|+..++..+..+ .+..+..+...+...|+.+.|+..++++
T Consensus 91 LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 91 LARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 5666677777777777776654222 3445555556677777777777777665
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00033 Score=53.23 Aligned_cols=57 Identities=16% Similarity=0.239 Sum_probs=45.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCCcchHHHHHHHHHh
Q 040319 615 LLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWHNSELVREDMRE 671 (812)
Q Consensus 615 ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 671 (812)
+...+...|+++.|+..++++++.+|+++.++..++.+|...|++++|..++++..+
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344567788888888888888888888888888888888888888888888887754
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0001 Score=47.08 Aligned_cols=33 Identities=21% Similarity=0.477 Sum_probs=30.9
Q ss_pred HHHHHccCCCCCchHHHHHhhhhhCCCcchHHH
Q 040319 632 AKHILAMEPQDPATYILVSNLYSSSGRWHNSEL 664 (812)
Q Consensus 632 ~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~ 664 (812)
++++++++|+|+.+|..|+.+|...|++++|++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 688999999999999999999999999999863
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.00043 Score=67.28 Aligned_cols=87 Identities=11% Similarity=0.077 Sum_probs=76.8
Q ss_pred HHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCCcchH
Q 040319 585 SVLGYWGFLEEAEETINNMP-FQP-KVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWHNS 662 (812)
Q Consensus 585 ~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a 662 (812)
+-+.+.+++++|++.+.+.. +.| |++.|..-..+|.+.|.++.|.+.++.+++++|....+|..|+-+|...|++++|
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHH
Confidence 34567789999999998854 677 6777777888899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHh
Q 040319 663 ELVREDMRE 671 (812)
Q Consensus 663 ~~~~~~m~~ 671 (812)
.+.+++..+
T Consensus 169 ~~aykKaLe 177 (304)
T KOG0553|consen 169 IEAYKKALE 177 (304)
T ss_pred HHHHHhhhc
Confidence 999887644
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0025 Score=56.93 Aligned_cols=89 Identities=11% Similarity=0.023 Sum_probs=76.5
Q ss_pred HHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCCcc
Q 040319 583 LVSVLGYWGFLEEAEETINNMP-FQP-KVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWH 660 (812)
Q Consensus 583 li~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~ 660 (812)
...-+-..|++++|..+|+-+- ..| +..-|..|...|...++.+.|...+..+..++++||.++...+..|...|+.+
T Consensus 43 ~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~ 122 (165)
T PRK15331 43 HAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAA 122 (165)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHH
Confidence 3444557899999999888754 344 66678888888999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHh
Q 040319 661 NSELVREDMRE 671 (812)
Q Consensus 661 ~a~~~~~~m~~ 671 (812)
+|...+....+
T Consensus 123 ~A~~~f~~a~~ 133 (165)
T PRK15331 123 KARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHh
Confidence 99999988643
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.17 Score=52.03 Aligned_cols=104 Identities=14% Similarity=0.031 Sum_probs=70.1
Q ss_pred HHHhhhcCCHHHHHHHHccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCchHHH
Q 040319 480 VSMYFKCCNMSNAIKAFNKMPSHDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDAITFVLIISAYRYTNLNLVDS 559 (812)
Q Consensus 480 i~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~g~~~~ 559 (812)
+.-+...|+...|.++-.+..-||-.-|-..+.+|+..+++++-.++... .- ..+-|..++.+|.. .|...+
T Consensus 184 i~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s----kK--sPIGyepFv~~~~~--~~~~~e 255 (319)
T PF04840_consen 184 IRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS----KK--SPIGYEPFVEACLK--YGNKKE 255 (319)
T ss_pred HHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC----CC--CCCChHHHHHHHHH--CCCHHH
Confidence 44455667777888877777778888888888888888887766654332 12 23667777777777 777777
Q ss_pred HHHHHHHhhhhcCccCCcchHHHHHHHHhhcCChHHHHHHHHh
Q 040319 560 CRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLEEAEETINN 602 (812)
Q Consensus 560 a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~ 602 (812)
|..+...+. +..-+.+|.++|.+.+|.+.--+
T Consensus 256 A~~yI~k~~-----------~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 256 ASKYIPKIP-----------DEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HHHHHHhCC-----------hHHHHHHHHHCCCHHHHHHHHHH
Confidence 777765432 24556777777877777665444
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.21 Score=51.43 Aligned_cols=84 Identities=21% Similarity=0.122 Sum_probs=58.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhcCCCCcchhHHHHHHHHHhhCChhHHHHHhccCCCCCcccHHHHHHHHHhCCChHHH
Q 040319 239 VNNALIGFYTKCGRVKDVVALLERMPVMDIITLTEIIIAYMEFGYVDLAVEIFDKMPEKNSVSYNALLAGYCKNGKAMEA 318 (812)
Q Consensus 239 ~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A 318 (812)
+.+.-|.-+...|+...|.++-.+..-||..-|-..+.+|++.+++++-.++... ++.++.|..++..+.+.|+..+|
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s--kKsPIGyepFv~~~~~~~~~~eA 256 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS--KKSPIGYEPFVEACLKYGNKKEA 256 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC--CCCCCChHHHHHHHHHCCCHHHH
Confidence 3444455566677777777777777777777777777777777777776665543 45667777777777777777777
Q ss_pred HHHHHH
Q 040319 319 LGLFVK 324 (812)
Q Consensus 319 ~~l~~~ 324 (812)
..+...
T Consensus 257 ~~yI~k 262 (319)
T PF04840_consen 257 SKYIPK 262 (319)
T ss_pred HHHHHh
Confidence 766655
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.019 Score=55.04 Aligned_cols=138 Identities=15% Similarity=0.098 Sum_probs=79.2
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCcchhHHHHHHHHHhhCChhHHHHHhccCCCCC-cccH
Q 040319 224 VHAHAIRIGLGANLSVNNALIGFYTKCGRVKDVVALLERMPVMDIITLTEIIIAYMEFGYVDLAVEIFDKMPEKN-SVSY 302 (812)
Q Consensus 224 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~d-~~~~ 302 (812)
+.+.+.......+......-...|++.|++++|.+.+... .+......=+..+.+..+++-|.+.+++|.+-| ..+.
T Consensus 95 l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~--~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~tL 172 (299)
T KOG3081|consen 95 LYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG--ENLEAAALNVQILLKMHRFDLAEKELKKMQQIDEDATL 172 (299)
T ss_pred HHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHH
Confidence 3344443333444344444445677777777777776662 233333333455666777777777777777643 3344
Q ss_pred HHHHHHHHh----CCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHhccchhhhhHHHHHhhHHHhc
Q 040319 303 NALLAGYCK----NGKAMEALGLFVKLLEEGLVLTEFTLTSVVNACGLIMEAKLSEQIHGFVMKFG 364 (812)
Q Consensus 303 ~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g 364 (812)
+-|.+++.+ .+.+.+|.-+|++|-+. ..|+..+.+....++...+++++|..++..++...
T Consensus 173 tQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd 237 (299)
T KOG3081|consen 173 TQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD 237 (299)
T ss_pred HHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc
Confidence 445444433 34567777777777543 45666666666666666666666666666655543
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0011 Score=61.74 Aligned_cols=93 Identities=11% Similarity=-0.080 Sum_probs=75.9
Q ss_pred CcchHHHHHHHHhhcCChHHHHHHHHhCC-CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHH
Q 040319 576 TSEHYASLVSVLGYWGFLEEAEETINNMP-FQPK----VSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVS 650 (812)
Q Consensus 576 ~~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 650 (812)
....|..++..+...|++++|+..+++.. ..|+ ..+|..+...+...|+.++|...++++++++|.....+..++
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la 113 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHH
Confidence 35566777788888899999999988853 3332 357888888999999999999999999999999999999999
Q ss_pred hhhh-------hCCCcchHHHHHHH
Q 040319 651 NLYS-------SSGRWHNSELVRED 668 (812)
Q Consensus 651 ~~y~-------~~g~~~~a~~~~~~ 668 (812)
.+|. +.|++++|...+++
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHH
Confidence 9999 78888766655554
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.013 Score=55.69 Aligned_cols=155 Identities=12% Similarity=0.118 Sum_probs=122.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH----HHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCCcchHHH
Q 040319 507 WNGLIAGHLLHRQGDEALAVWSSMEKASIKPDAI----TFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYAS 582 (812)
Q Consensus 507 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~----t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~ 582 (812)
|..++-+....|+.+.|...++++... .|.+. -...++.+ .|.+++|.++++++.++. +.+..+|--
T Consensus 55 ~EqV~IAAld~~~~~lAq~C~~~L~~~--fp~S~RV~~lkam~lEa-----~~~~~~A~e~y~~lL~dd--pt~~v~~KR 125 (289)
T KOG3060|consen 55 YEQVFIAALDTGRDDLAQKCINQLRDR--FPGSKRVGKLKAMLLEA-----TGNYKEAIEYYESLLEDD--PTDTVIRKR 125 (289)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHh--CCCChhHHHHHHHHHHH-----hhchhhHHHHHHHHhccC--cchhHHHHH
Confidence 444556667789999999999999884 37652 23444555 788999999999998743 334677777
Q ss_pred HHHHHhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCC--
Q 040319 583 LVSVLGYWGFLEEAEETINNMP--FQPKVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGR-- 658 (812)
Q Consensus 583 li~~l~~~g~~~~A~~~~~~m~--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~-- 658 (812)
=+-++-..|+--+|++-+.+.. +..|.-.|.-|...|...|+++.|.-.+|+++=+.|.++..+..+++++.-.|-
T Consensus 126 KlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~e 205 (289)
T KOG3060|consen 126 KLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAE 205 (289)
T ss_pred HHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHH
Confidence 7778888888888887776644 567899999999999999999999999999999999999999999999888875
Q ss_pred -cchHHHHHHHHH
Q 040319 659 -WHNSELVREDMR 670 (812)
Q Consensus 659 -~~~a~~~~~~m~ 670 (812)
.+-|.+.+.+..
T Consensus 206 N~~~arkyy~~al 218 (289)
T KOG3060|consen 206 NLELARKYYERAL 218 (289)
T ss_pred HHHHHHHHHHHHH
Confidence 445555555543
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0019 Score=60.46 Aligned_cols=82 Identities=12% Similarity=0.050 Sum_probs=65.3
Q ss_pred cchHHHHHHHHhhcCChHHHHHHHHhCC-CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHh
Q 040319 577 SEHYASLVSVLGYWGFLEEAEETINNMP-FQPK----VSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSN 651 (812)
Q Consensus 577 ~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 651 (812)
...|..+...+.+.|++++|...+++.. ..|+ ...|..+...+...|+.+.|...++++++..|+++..+..++.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 114 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 4456667777777888888888777653 2222 3577788888899999999999999999999999999999999
Q ss_pred hhhhCCC
Q 040319 652 LYSSSGR 658 (812)
Q Consensus 652 ~y~~~g~ 658 (812)
+|...|+
T Consensus 115 ~~~~~g~ 121 (172)
T PRK02603 115 IYHKRGE 121 (172)
T ss_pred HHHHcCC
Confidence 9988887
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.13 Score=52.17 Aligned_cols=214 Identities=14% Similarity=0.108 Sum_probs=142.5
Q ss_pred HHHHHhcCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHhhhcCCHHHHHHHHccCC-----CCChh--HHHHHHHHHH
Q 040319 443 SVLGVCGTLGFHEMGKQIHSYALKTGFSSDLGVANSMVSMYFKCCNMSNAIKAFNKMP-----SHDIV--SWNGLIAGHL 515 (812)
Q Consensus 443 ~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~-----~~~~~--~~~~li~~~~ 515 (812)
.+.-...+.|..+.++++-+..-..- +.-...+.++++..+..|+++.|+++.+.-. ++|+. .--.|+.+-+
T Consensus 159 gLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA 237 (531)
T COG3898 159 GLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKA 237 (531)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHH
Confidence 33334455677777776666554422 2234566778888999999999999987543 35542 2223333322
Q ss_pred ---hcCChHHHHHHHHHHHHCCCCCCHHHHHH-HHHHhcCCCCchHHHHHHHHHHhhhhcCccCCcchHHHHHHHHhhcC
Q 040319 516 ---LHRQGDEALAVWSSMEKASIKPDAITFVL-IISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWG 591 (812)
Q Consensus 516 ---~~g~~~~A~~l~~~m~~~g~~pd~~t~~~-ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g 591 (812)
-.-+...|...-.+..+ +.||-+.-.. --.++.. .|++.++-.+++.+-+ ..|.+..+...++ .|.|
T Consensus 238 ~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~--d~~~rKg~~ilE~aWK---~ePHP~ia~lY~~--ar~g 308 (531)
T COG3898 238 MSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFR--DGNLRKGSKILETAWK---AEPHPDIALLYVR--ARSG 308 (531)
T ss_pred HHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHh--ccchhhhhhHHHHHHh---cCCChHHHHHHHH--hcCC
Confidence 23456677777777766 8888754333 3346666 8999999999998865 5677777665543 4555
Q ss_pred ChHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhC-CCcchHHHH
Q 040319 592 FLEEAEETINNM----PFQPK-VSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSS-GRWHNSELV 665 (812)
Q Consensus 592 ~~~~A~~~~~~m----~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~-g~~~~a~~~ 665 (812)
+- +++-+++. .++|| ......+..+....|++..|....+.+..++|. .+.|.+|+++-... |+-.++...
T Consensus 309 dt--a~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pr-es~~lLlAdIeeAetGDqg~vR~w 385 (531)
T COG3898 309 DT--ALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPR-ESAYLLLADIEEAETGDQGKVRQW 385 (531)
T ss_pred Cc--HHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCch-hhHHHHHHHHHhhccCchHHHHHH
Confidence 42 22222221 14665 445555666777889999999999999999997 77899999998776 888888877
Q ss_pred HHHH
Q 040319 666 REDM 669 (812)
Q Consensus 666 ~~~m 669 (812)
+-+.
T Consensus 386 lAqa 389 (531)
T COG3898 386 LAQA 389 (531)
T ss_pred HHHH
Confidence 7654
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.41 Score=50.84 Aligned_cols=160 Identities=9% Similarity=0.026 Sum_probs=120.2
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCCcchHHHH
Q 040319 505 VSWNGLIAGHLLHRQGDEALAVWSSMEKASIKP-DAITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYASL 583 (812)
Q Consensus 505 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~l 583 (812)
.+|-..+..-.+..-.+.|..+|.+..+.+..+ +.....+++.-++. ++..-|.++|+.=.+.+|- ++.--.+.
T Consensus 367 Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs---kD~~~AfrIFeLGLkkf~d--~p~yv~~Y 441 (656)
T KOG1914|consen 367 LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS---KDKETAFRIFELGLKKFGD--SPEYVLKY 441 (656)
T ss_pred eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc---CChhHHHHHHHHHHHhcCC--ChHHHHHH
Confidence 467777777777777889999999999998888 55667777776654 8899999999976664533 33445678
Q ss_pred HHHHhhcCChHHHHHHHHhCC---CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCC----CchHHHHHhhhh
Q 040319 584 VSVLGYWGFLEEAEETINNMP---FQPK--VSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQD----PATYILVSNLYS 654 (812)
Q Consensus 584 i~~l~~~g~~~~A~~~~~~m~---~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~----~~~~~~l~~~y~ 654 (812)
++-|.+-++-..|..+|++.. +.|| ..+|..+|.--..-||+.....+-++....-|.+ ...-..+.+.|.
T Consensus 442 ldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~ 521 (656)
T KOG1914|consen 442 LDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYG 521 (656)
T ss_pred HHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHh
Confidence 888999999999999999865 3444 4699999999999999999999888877665521 123455677787
Q ss_pred hCCCcchHHHHHHHH
Q 040319 655 SSGRWHNSELVREDM 669 (812)
Q Consensus 655 ~~g~~~~a~~~~~~m 669 (812)
=.++...-..-++.|
T Consensus 522 ~~d~~~c~~~elk~l 536 (656)
T KOG1914|consen 522 ILDLYPCSLDELKFL 536 (656)
T ss_pred hcccccccHHHHHhh
Confidence 777776555555544
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0035 Score=54.39 Aligned_cols=67 Identities=15% Similarity=-0.012 Sum_probs=40.2
Q ss_pred HHHHHHHHhhcCChHHHHHHHHhCC-CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchH
Q 040319 580 YASLVSVLGYWGFLEEAEETINNMP-FQPK----VSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATY 646 (812)
Q Consensus 580 y~~li~~l~~~g~~~~A~~~~~~m~-~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 646 (812)
+..+..++.+.|++++|.+.++++. ..|+ ..++..+..++...|+.+.|...++++++..|+++...
T Consensus 42 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 113 (119)
T TIGR02795 42 HYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSSAAK 113 (119)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCChhHH
Confidence 3334555555555555555555432 2222 34566666667777888888888888888888765543
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.048 Score=58.43 Aligned_cols=97 Identities=21% Similarity=0.191 Sum_probs=60.3
Q ss_pred HHHHhhhcCCHHHHHHHHccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCchHH
Q 040319 479 MVSMYFKCCNMSNAIKAFNKMPSHDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDAITFVLIISAYRYTNLNLVD 558 (812)
Q Consensus 479 Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~g~~~ 558 (812)
-..++...|+.++|..+. ..+|-.+-++++-+++-.. +..+...+..-+.. ...+.
T Consensus 709 AAEmLiSaGe~~KAi~i~------------------~d~gW~d~lidI~rkld~~----ere~l~~~a~ylk~--l~~~g 764 (1081)
T KOG1538|consen 709 AAEMLISAGEHVKAIEIC------------------GDHGWVDMLIDIARKLDKA----EREPLLLCATYLKK--LDSPG 764 (1081)
T ss_pred HHHHhhcccchhhhhhhh------------------hcccHHHHHHHHHhhcchh----hhhHHHHHHHHHhh--ccccc
Confidence 455666777777776653 3344445555554444331 22333333333333 55566
Q ss_pred HHHHHHHHhhhhcCccCCcchHHHHHHHHhhcCChHHHHHHHHhCC-CCCCH
Q 040319 559 SCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLEEAEETINNMP-FQPKV 609 (812)
Q Consensus 559 ~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p~~ 609 (812)
-|-++|.+|-. ...++++....|+++||..+-++.| +.||.
T Consensus 765 LAaeIF~k~gD----------~ksiVqlHve~~~W~eAFalAe~hPe~~~dV 806 (1081)
T KOG1538|consen 765 LAAEIFLKMGD----------LKSLVQLHVETQRWDEAFALAEKHPEFKDDV 806 (1081)
T ss_pred hHHHHHHHhcc----------HHHHhhheeecccchHhHhhhhhCccccccc
Confidence 77888887754 3567888889999999999999988 56664
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.013 Score=54.60 Aligned_cols=123 Identities=15% Similarity=0.070 Sum_probs=70.8
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCC-cchH
Q 040319 504 IVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPD--AITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPT-SEHY 580 (812)
Q Consensus 504 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd--~~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y 580 (812)
...|..+...+...|++++|+..|++.+.....|. ..++..+...+.+ .|+.++|...++...+ +.|+ ...+
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~--~g~~~eA~~~~~~Al~---~~~~~~~~~ 109 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTS--NGEHTKALEYYFQALE---RNPFLPQAL 109 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHH--cCCHHHHHHHHHHHHH---hCcCcHHHH
Confidence 35566677777777888888888888776322221 1355556566666 7777777777776664 2232 3444
Q ss_pred HHHHHHHh-------hcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhh
Q 040319 581 ASLVSVLG-------YWGFLEEAEETINNMPFQPKVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLY 653 (812)
Q Consensus 581 ~~li~~l~-------~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y 653 (812)
..+..++. +.|++++|+.. .+.|...++++++.+|++. ......+
T Consensus 110 ~~la~i~~~~~~~~~~~g~~~~A~~~-------------------------~~~a~~~~~~a~~~~p~~~---~~~~~~~ 161 (168)
T CHL00033 110 NNMAVICHYRGEQAIEQGDSEIAEAW-------------------------FDQAAEYWKQAIALAPGNY---IEAQNWL 161 (168)
T ss_pred HHHHHHHHHhhHHHHHcccHHHHHHH-------------------------HHHHHHHHHHHHHhCcccH---HHHHHHH
Confidence 44444444 33344333322 3456677788888888632 3333444
Q ss_pred hhCCCc
Q 040319 654 SSSGRW 659 (812)
Q Consensus 654 ~~~g~~ 659 (812)
...|++
T Consensus 162 ~~~~~~ 167 (168)
T CHL00033 162 KITGRF 167 (168)
T ss_pred HHhcCC
Confidence 444544
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.6 Score=50.96 Aligned_cols=323 Identities=13% Similarity=0.093 Sum_probs=148.5
Q ss_pred CChHHHHHHHhcCCCCcchhHHHHHHHHHhhCChhHHHHHhccCCCC-----CcccHHHHHHHHHhCCChHHHHHHHHHH
Q 040319 251 GRVKDVVALLERMPVMDIITLTEIIIAYMEFGYVDLAVEIFDKMPEK-----NSVSYNALLAGYCKNGKAMEALGLFVKL 325 (812)
Q Consensus 251 g~~~~A~~l~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~-----d~~~~~~li~~~~~~g~~~~A~~l~~~m 325 (812)
|++++|++++-+|..+|. -|..+.+.|++-...++++.-... -...|+.+...+.....+++|.+.|..-
T Consensus 748 g~feeaek~yld~drrDL-----Aielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~ 822 (1189)
T KOG2041|consen 748 GEFEEAEKLYLDADRRDL-----AIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYC 822 (1189)
T ss_pred cchhHhhhhhhccchhhh-----hHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 778888887777766654 234455555655555555432211 1235666666666666666666665443
Q ss_pred HHcCCCCCHhHHHHHHHHhccchhhhhHHHHHhhHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCCceeee
Q 040319 326 LEEGLVLTEFTLTSVVNACGLIMEAKLSEQIHGFVMKFGLGSNDCIEAALLDMLTRCGRMADAEKMFYRWPTDRDDSIIW 405 (812)
Q Consensus 326 ~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~ 405 (812)
... ...+.++.+...++.-+.+- ..++.+....-.+.+|+.+.|.-++|.+.|-+-. .+.
T Consensus 823 ~~~---------e~~~ecly~le~f~~LE~la-----~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s-~pk----- 882 (1189)
T KOG2041|consen 823 GDT---------ENQIECLYRLELFGELEVLA-----RTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRS-LPK----- 882 (1189)
T ss_pred cch---------HhHHHHHHHHHhhhhHHHHH-----HhcCcccchHHHHHHHHHhhchHHHHHHHHHhcc-CcH-----
Confidence 211 11122222222222211111 2234445555556666666666666666664443 211
Q ss_pred HHHHHHHHHcCChhhHHHHHHHhcccCCCCCChhhHHHHHHHhcCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHhhh
Q 040319 406 TSMICGYARSGKPEHAILLFHQSQSEATVVPDEIALTSVLGVCGTLGFHEMGKQIHSYALKTGFSSDLGVANSMVSMYFK 485 (812)
Q Consensus 406 ~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k 485 (812)
+-+..|...+++.+|.++-+..+- |...|+ +.- .+-++ +.+.+ + ---|.++.|
T Consensus 883 -aAv~tCv~LnQW~~avelaq~~~l-----~qv~tl---iak--------~aaql---l~~~~------~-~eaIe~~Rk 935 (1189)
T KOG2041|consen 883 -AAVHTCVELNQWGEAVELAQRFQL-----PQVQTL---IAK--------QAAQL---LADAN------H-MEAIEKDRK 935 (1189)
T ss_pred -HHHHHHHHHHHHHHHHHHHHhccc-----hhHHHH---HHH--------HHHHH---Hhhcc------h-HHHHHHhhh
Confidence 234455556666666665544332 222221 110 01111 11111 1 113667888
Q ss_pred cCCHHHHHHHHccCCCCCh---hHHHHHHHHH----HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCchHH
Q 040319 486 CCNMSNAIKAFNKMPSHDI---VSWNGLIAGH----LLHRQGDEALAVWSSMEKASIKPDAITFVLIISAYRYTNLNLVD 558 (812)
Q Consensus 486 ~g~~~~A~~~f~~~~~~~~---~~~~~li~~~----~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~g~~~ 558 (812)
.|..-+|.+++.+|.++.. +.+--+=..| ....+..++++-.++....|...|... |+ . .|...
T Consensus 936 a~~~~daarll~qmae~e~~K~~p~lr~KklYVL~AlLvE~h~~~ik~~~~~~~~g~~~dat~---ll----e--s~~l~ 1006 (1189)
T KOG2041|consen 936 AGRHLDAARLLSQMAEREQEKYVPYLRLKKLYVLGALLVENHRQTIKELRKIDKHGFLEDATD---LL----E--SGLLA 1006 (1189)
T ss_pred cccchhHHHHHHHHhHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCcchhhhh---hh----h--hhhhh
Confidence 8888888888877765211 1111111111 112233445555555555554433322 11 1 33333
Q ss_pred HHHHHHHHhhhhcCccCCcchHHHHHHHHhhcCChHHHHHHHHhCC----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 040319 559 SCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLEEAEETINNMP----FQPKVSVWRALLDSCRIRLNTTIGKRVAKH 634 (812)
Q Consensus 559 ~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~----~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 634 (812)
++-.+.+..-. -....|+-.|..--...|+++.|++.--.+. +-|-.-+|.-|.-+.+..+.+.-.-+++-+
T Consensus 1007 ~~~ri~~n~Wr----gAEAyHFmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALaaca~raFGtCSKAfmk 1082 (1189)
T KOG2041|consen 1007 EQSRILENTWR----GAEAYHFMILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLLALAACAVRAFGTCSKAFMK 1082 (1189)
T ss_pred hHHHHHHhhhh----hHHHHHHHHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhhhhhhhhHHHHHH
Confidence 33333332211 1234455555666677888888887543332 223344444433333333444444455544
Q ss_pred HHcc
Q 040319 635 ILAM 638 (812)
Q Consensus 635 ~~~~ 638 (812)
+-++
T Consensus 1083 Le~~ 1086 (1189)
T KOG2041|consen 1083 LEAF 1086 (1189)
T ss_pred HHhh
Confidence 4443
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0067 Score=56.81 Aligned_cols=130 Identities=13% Similarity=0.132 Sum_probs=84.5
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCC-cch
Q 040319 503 DIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPD--AITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPT-SEH 579 (812)
Q Consensus 503 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd--~~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~ 579 (812)
....+..+...|...|++++|+..|++..+....|+ ...+..+...+.. .|++++|...+++..+ +.|+ ...
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~al~---~~p~~~~~ 108 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYAS--NGEHDKALEYYHQALE---LNPKQPSA 108 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHH---hCcccHHH
Confidence 345677777778888888888888888877432222 2455566666666 7888888888877765 2343 455
Q ss_pred HHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCC
Q 040319 580 YASLVSVLGYWGFLEEAEETINNMPFQPKVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGR 658 (812)
Q Consensus 580 y~~li~~l~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~ 658 (812)
+..+..++...|+...|..-++.. ...++.|...++++++++|++ |..+...+...|+
T Consensus 109 ~~~lg~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 109 LNNIAVIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 566666666666655544322221 122577888999999999875 6566666666654
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0028 Score=66.88 Aligned_cols=100 Identities=15% Similarity=0.122 Sum_probs=58.8
Q ss_pred CchHHHHHHHHHHhhhhcCccCC-cchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHH
Q 040319 554 LNLVDSCRKLFLSMKTIYNIEPT-SEHYASLVSVLGYWGFLEEAEETINNMP-FQP-KVSVWRALLDSCRIRLNTTIGKR 630 (812)
Q Consensus 554 ~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~ 630 (812)
.|++++|++.|+++.+ ..|+ ...|..+..+|.+.|++++|+..+++.. +.| +...|..+..+|...|+++.|+.
T Consensus 15 ~~~~~~Ai~~~~~Al~---~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~~ 91 (356)
T PLN03088 15 DDDFALAVDLYTQAID---LDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKA 91 (356)
T ss_pred cCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 3444444444444443 1222 3444455555555566666665555543 344 45566666667777777777777
Q ss_pred HHHHHHccCCCCCchHHHHHhhhhhC
Q 040319 631 VAKHILAMEPQDPATYILVSNLYSSS 656 (812)
Q Consensus 631 ~~~~~~~~~p~~~~~~~~l~~~y~~~ 656 (812)
.++++++++|+++.....+..+..+.
T Consensus 92 ~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 92 ALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 77777777777777766665554433
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.011 Score=60.22 Aligned_cols=144 Identities=15% Similarity=0.157 Sum_probs=104.9
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCCcchHHHH
Q 040319 505 VSWNGLIAGHLLHRQGDEALAVWSSMEKAS-IKPDAITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYASL 583 (812)
Q Consensus 505 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~pd~~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~l 583 (812)
..|-.++....+.+..+.|.++|.+.++.+ ...+.....+++.-+ . .++.+.|.++|+...+. +..+...|...
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~-~--~~d~~~A~~Ife~glk~--f~~~~~~~~~Y 76 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYY-C--NKDPKRARKIFERGLKK--FPSDPDFWLEY 76 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHH-T--CS-HHHHHHHHHHHHHH--HTT-HHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-h--CCCHHHHHHHHHHHHHH--CCCCHHHHHHH
Confidence 467788888888888899999999988643 233334444444433 2 46777799999998874 44567889999
Q ss_pred HHHHhhcCChHHHHHHHHhCC-CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhh
Q 040319 584 VSVLGYWGFLEEAEETINNMP-FQPK----VSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYS 654 (812)
Q Consensus 584 i~~l~~~g~~~~A~~~~~~m~-~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~ 654 (812)
++.+.+.|+.+.|..+|++.. .-|. ..+|..++.--..+|+++....+.+++.+.-|++. ....+++-|.
T Consensus 77 ~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~-~~~~f~~ry~ 151 (280)
T PF05843_consen 77 LDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDN-SLELFSDRYS 151 (280)
T ss_dssp HHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS--HHHHHHCCT-
T ss_pred HHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhh-HHHHHHHHhh
Confidence 999999999999999999854 2333 35999999999999999999999999999988744 3444555453
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0013 Score=51.38 Aligned_cols=56 Identities=16% Similarity=0.176 Sum_probs=48.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCCcchHHHHHHHHHhC
Q 040319 617 DSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWHNSELVREDMREK 672 (812)
Q Consensus 617 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 672 (812)
..+...++++.|..+++++++++|+++..+..++.+|.+.|++++|.+.++..-+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 45678888999999999999999999999999999999999999999988887543
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.001 Score=50.46 Aligned_cols=61 Identities=18% Similarity=0.181 Sum_probs=49.6
Q ss_pred HHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCC
Q 040319 583 LVSVLGYWGFLEEAEETINNMP-FQP-KVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDP 643 (812)
Q Consensus 583 li~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~ 643 (812)
+...+.+.|++++|.+.+++.. ..| +...|..+...+...|+.+.|...++++++.+|++|
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 4566778889999999888854 556 566888888899999999999999999999999864
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.045 Score=49.41 Aligned_cols=130 Identities=10% Similarity=0.080 Sum_probs=91.5
Q ss_pred CCCCHHHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCCcchHHHHHHHHhhcCChHHHHHHHHhC-CC-----CCC
Q 040319 535 IKPDAITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLEEAEETINNM-PF-----QPK 608 (812)
Q Consensus 535 ~~pd~~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m-~~-----~p~ 608 (812)
+.|....-..|..+... .|+..||...|++... .-+.-|....-.+..+....++..+|...+++. .. .||
T Consensus 85 ~ApTvqnr~rLa~al~e--lGr~~EA~~hy~qals-G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd 161 (251)
T COG4700 85 IAPTVQNRYRLANALAE--LGRYHEAVPHYQQALS-GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD 161 (251)
T ss_pred hchhHHHHHHHHHHHHH--hhhhhhhHHHHHHHhc-cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC
Confidence 55666555666666666 7777777777777664 223344555666666667777777777777763 22 344
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCCcchHHHHHHHHH
Q 040319 609 VSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWHNSELVREDMR 670 (812)
Q Consensus 609 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 670 (812)
. ...+...+...|..+.|+..++.++..-|+ +..-...+.+++++|+.++|..-...+.
T Consensus 162 ~--~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 162 G--HLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred c--hHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 3 334556688889999999999999999886 6777788899999999998877655543
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0026 Score=62.41 Aligned_cols=101 Identities=12% Similarity=0.079 Sum_probs=86.1
Q ss_pred CCcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhc---CCHHHHHHHHHHHHccCCCCCchHHHH
Q 040319 575 PTSEHYASLVSVLGYWGFLEEAEETINNMP-FQP-KVSVWRALLDSCRIR---LNTTIGKRVAKHILAMEPQDPATYILV 649 (812)
Q Consensus 575 p~~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~---~~~~~a~~~~~~~~~~~p~~~~~~~~l 649 (812)
-|.+.|--|...|.+.|+++.|..-|.+.. +.| ++..+..+..++... .+..++..++++++.++|.|..+...|
T Consensus 154 ~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lL 233 (287)
T COG4235 154 GDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLL 233 (287)
T ss_pred CCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHH
Confidence 358899999999999999999999998865 444 677787777774433 356889999999999999999999999
Q ss_pred HhhhhhCCCcchHHHHHHHHHhCCCC
Q 040319 650 SNLYSSSGRWHNSELVREDMREKGFR 675 (812)
Q Consensus 650 ~~~y~~~g~~~~a~~~~~~m~~~g~~ 675 (812)
+-.+...|++.+|...++.|.+....
T Consensus 234 A~~afe~g~~~~A~~~Wq~lL~~lp~ 259 (287)
T COG4235 234 AFAAFEQGDYAEAAAAWQMLLDLLPA 259 (287)
T ss_pred HHHHHHcccHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999876553
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.045 Score=54.13 Aligned_cols=173 Identities=12% Similarity=0.024 Sum_probs=108.3
Q ss_pred HHHHhhhcCCHHHHHHHHccCCC--CChh----HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHhc
Q 040319 479 MVSMYFKCCNMSNAIKAFNKMPS--HDIV----SWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDA--ITFVLIISAYR 550 (812)
Q Consensus 479 Li~~y~k~g~~~~A~~~f~~~~~--~~~~----~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~--~t~~~ll~a~~ 550 (812)
....+.+.|++++|...|+.+.. |+.. ..-.++.+|.+.+++++|...|++.++ ..|+. +.+...+.+.+
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~--~~P~~~~~~~a~Y~~g~~ 115 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIR--LNPTHPNIDYVLYMRGLT 115 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--hCcCCCchHHHHHHHHHh
Confidence 34455678999999999988865 4331 123456777889999999999999998 66665 44444444433
Q ss_pred CCC------------------CchHHHHHHHHHHhhhhcCccCCcchHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHH
Q 040319 551 YTN------------------LNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLEEAEETINNMPFQPKVSVW 612 (812)
Q Consensus 551 ~~~------------------~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~~~p~~~~~ 612 (812)
+.. .....+|...|+.+.+ -|-......+|...+..+...--..-
T Consensus 116 ~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~----------------~yP~S~ya~~A~~rl~~l~~~la~~e- 178 (243)
T PRK10866 116 NMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVR----------------GYPNSQYTTDATKRLVFLKDRLAKYE- 178 (243)
T ss_pred hhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHH----------------HCcCChhHHHHHHHHHHHHHHHHHHH-
Confidence 200 1112334444444443 33333444555444333220000000
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHccCCCC---CchHHHHHhhhhhCCCcchHHHHHHHHH
Q 040319 613 RALLDSCRIRLNTTIGKRVAKHILAMEPQD---PATYILVSNLYSSSGRWHNSELVREDMR 670 (812)
Q Consensus 613 ~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 670 (812)
.....-|.+.|...-|..-++.+++--|+. +.+...+.+.|.+.|..++|.++.....
T Consensus 179 ~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 179 LSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 123344778899999999999999887764 4566788899999999999999887653
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.00071 Score=51.94 Aligned_cols=51 Identities=16% Similarity=0.316 Sum_probs=40.5
Q ss_pred hcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCCcchHHHHHHHHHh
Q 040319 621 IRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWHNSELVREDMRE 671 (812)
Q Consensus 621 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 671 (812)
..|+++.|...++++++.+|+++.++..++.+|.+.|++++|.++++++..
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 467788888888888888888888888888888888888888888876543
|
... |
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.001 Score=51.05 Aligned_cols=59 Identities=17% Similarity=0.198 Sum_probs=25.8
Q ss_pred CChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHH
Q 040319 591 GFLEEAEETINNMP-FQP-KVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILV 649 (812)
Q Consensus 591 g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 649 (812)
|++++|+++++++. ..| +..++..+..+|...|++++|+..++++...+|+++..+..+
T Consensus 5 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~ 65 (68)
T PF14559_consen 5 GDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLL 65 (68)
T ss_dssp THHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 44444444444432 222 344444444445555555555555555555555444433333
|
... |
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.058 Score=55.09 Aligned_cols=115 Identities=10% Similarity=0.085 Sum_probs=70.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCC-chHHHHHHHHHHhhhhcCccCC----cchHHHHH
Q 040319 510 LIAGHLLHRQGDEALAVWSSMEKASIKPDAITFVLIISAYRYTNL-NLVDSCRKLFLSMKTIYNIEPT----SEHYASLV 584 (812)
Q Consensus 510 li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~-g~~~~a~~~~~~m~~~~~~~p~----~~~y~~li 584 (812)
.+..|...|++..|-+.+.++-+ .|.. . |++++|.++|++..+-+..... ...+..++
T Consensus 100 A~~~y~~~G~~~~aA~~~~~lA~---------------~ye~--~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A 162 (282)
T PF14938_consen 100 AIEIYREAGRFSQAAKCLKELAE---------------IYEE--QLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAA 162 (282)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHH---------------HHCC--TT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHhcCcHHHHHHHHHHHHH---------------HHHH--HcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHH
Confidence 45666777777776666665544 3444 5 7777777777776553322222 34566778
Q ss_pred HHHhhcCChHHHHHHHHhCC---C-----CCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHccCCC
Q 040319 585 SVLGYWGFLEEAEETINNMP---F-----QPKVS-VWRALLDSCRIRLNTTIGKRVAKHILAMEPQ 641 (812)
Q Consensus 585 ~~l~~~g~~~~A~~~~~~m~---~-----~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~ 641 (812)
.++.+.|++++|.+++++.. . +.+.. .+...+-.+...||...|...+++..+.+|.
T Consensus 163 ~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~ 228 (282)
T PF14938_consen 163 DLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPS 228 (282)
T ss_dssp HHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTT
T ss_pred HHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 88999999999999998743 1 11111 1222222345678999999999999999986
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.79 Score=47.76 Aligned_cols=230 Identities=12% Similarity=0.050 Sum_probs=123.8
Q ss_pred CCCCCChhh-HHHHHHHhcCccchHHHHHHHHHHHHhCCCC----chhHHHHHHHHhhhcCCHHHHHHHHccCC--CCCh
Q 040319 432 ATVVPDEIA-LTSVLGVCGTLGFHEMGKQIHSYALKTGFSS----DLGVANSMVSMYFKCCNMSNAIKAFNKMP--SHDI 504 (812)
Q Consensus 432 ~g~~p~~~t-~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~----~~~~~~~Li~~y~k~g~~~~A~~~f~~~~--~~~~ 504 (812)
.-+.|+... ...+...+.. +.+.+..+-+.+....+.+ -+..+..++....+.++...|.+.+.-+. +|+.
T Consensus 254 ~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp~~ 331 (549)
T PF07079_consen 254 FYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILDPRI 331 (549)
T ss_pred hccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCcc
Confidence 334555432 2333444433 4555555555444332211 23344555666667788888877766443 2333
Q ss_pred h-------HHHHHHHHHH----hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH--hcCCCCchHHHHHHHHHHhhhhc
Q 040319 505 V-------SWNGLIAGHL----LHRQGDEALAVWSSMEKASIKPDAITFVLIISA--YRYTNLNLVDSCRKLFLSMKTIY 571 (812)
Q Consensus 505 ~-------~~~~li~~~~----~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a--~~~~~~g~~~~a~~~~~~m~~~~ 571 (812)
. +-.++-+..+ .+-+..+=+.+|++....++.--......+-.| +-+ ..|.-++|.++++.+.+
T Consensus 332 svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQLvh~L~~~Ak~lW~-~g~~dekalnLLk~il~-- 408 (549)
T PF07079_consen 332 SVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQLVHYLVFGAKHLWE-IGQCDEKALNLLKLILQ-- 408 (549)
T ss_pred hhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHh-cCCccHHHHHHHHHHHH--
Confidence 2 1111222222 122333445566666553332222221111111 112 03336677787777765
Q ss_pred CccCC-cchHHHHHHHHhhc-------C----ChHHHHHHHHhCCCCC----CHHHHHHHHHH--HHhcCCHHHHHHHHH
Q 040319 572 NIEPT-SEHYASLVSVLGYW-------G----FLEEAEETINNMPFQP----KVSVWRALLDS--CRIRLNTTIGKRVAK 633 (812)
Q Consensus 572 ~~~p~-~~~y~~li~~l~~~-------g----~~~~A~~~~~~m~~~p----~~~~~~~ll~~--~~~~~~~~~a~~~~~ 633 (812)
+.|. .+.-| .|-.+.+. + ++=.-..++++..+.| +.-+-+.|..| ...+|++.++.-...
T Consensus 409 -ft~yD~ec~n-~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~ 486 (549)
T PF07079_consen 409 -FTNYDIECEN-IVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSS 486 (549)
T ss_pred -hccccHHHHH-HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 2332 22222 11111110 1 1222234455544443 45577777777 567999999999988
Q ss_pred HHHccCCCCCchHHHHHhhhhhCCCcchHHHHHHHH
Q 040319 634 HILAMEPQDPATYILVSNLYSSSGRWHNSELVREDM 669 (812)
Q Consensus 634 ~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 669 (812)
=+.++.| .+.+|..++-++....+++||.+++.++
T Consensus 487 WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 487 WLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 8899999 6999999999999999999999999875
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.0081 Score=49.09 Aligned_cols=60 Identities=17% Similarity=0.111 Sum_probs=35.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcCCCCchHHHHHHHHHHhhh
Q 040319 506 SWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDA-ITFVLIISAYRYTNLNLVDSCRKLFLSMKT 569 (812)
Q Consensus 506 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~ 569 (812)
.|..+...+...|++++|+..|++..+ ..|+. ..+..+...+.. .|++++|.+.|+....
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~~~~~~~--~~~~~~a~~~~~~~~~ 62 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALE--LDPDNADAYYNLAAAYYK--LGKYEEALEDYEKALE 62 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHh--cCCccHHHHHHHHHHHHH--HHHHHHHHHHHHHHHh
Confidence 355566667777777777777777776 44543 344444444444 5566666666555443
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.023 Score=62.68 Aligned_cols=145 Identities=12% Similarity=0.063 Sum_probs=105.2
Q ss_pred CCCChhHHHHHHHHHHhc--CC---hHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcCC--CC----chHHHHHHHHHHh
Q 040319 500 PSHDIVSWNGLIAGHLLH--RQ---GDEALAVWSSMEKASIKPDA-ITFVLIISAYRYT--NL----NLVDSCRKLFLSM 567 (812)
Q Consensus 500 ~~~~~~~~~~li~~~~~~--g~---~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~--~~----g~~~~a~~~~~~m 567 (812)
...|...|...+.|.... ++ ...|..+|++.++ ..||. ..+..+..++... -. ..+..+.+.....
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~--ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a 410 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK--SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI 410 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence 347888999988876543 22 6799999999999 89997 4444443333320 00 1233444444443
Q ss_pred hhhcCccCCcchHHHHHHHHhhcCChHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchH
Q 040319 568 KTIYNIEPTSEHYASLVSVLGYWGFLEEAEETINNMP-FQPKVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATY 646 (812)
Q Consensus 568 ~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 646 (812)
........+...|..+.-.....|++++|...+++.. ..|+...|..+...+...|+.++|...+++++.++|.++..|
T Consensus 411 ~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt~~ 490 (517)
T PRK10153 411 VALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENTLY 490 (517)
T ss_pred hhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchHH
Confidence 3211123345778888777778899999999999976 788988899999999999999999999999999999988644
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.016 Score=47.86 Aligned_cols=81 Identities=17% Similarity=0.139 Sum_probs=68.0
Q ss_pred hHHHHHHHHHcCCChhHHHHHHHHhHhcCCC-CCCcchHHHHHHHHhcCC--------ChHHHHHHHHHHHHhCCCCchh
Q 040319 168 SWNTVISSVVNEFEYEKAFELFRDMKRDNGF-TVDYFTISTLLTACTGCF--------VLMEGRAVHAHAIRIGLGANLS 238 (812)
Q Consensus 168 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~-~pd~~t~~~ll~~~~~~~--------~~~~a~~~~~~~~~~g~~~~~~ 238 (812)
+-...|..+...+++.....+|+.+ ++.|+ .|+..+|+.++.+.+++. .+-....+++.++..++.|+..
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqsl-kRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~e 105 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSL-KRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDE 105 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHH-HhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHH
Confidence 3345667777779999999999999 88999 999999999999987553 3445778899999999999999
Q ss_pred HHHHHHHHHHh
Q 040319 239 VNNALIGFYTK 249 (812)
Q Consensus 239 ~~~~li~~~~~ 249 (812)
+|+.++..+.+
T Consensus 106 tYnivl~~Llk 116 (120)
T PF08579_consen 106 TYNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHHH
Confidence 99999987765
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.0031 Score=48.51 Aligned_cols=65 Identities=17% Similarity=0.105 Sum_probs=54.7
Q ss_pred CcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcC-CHHHHHHHHHHHHccCC
Q 040319 576 TSEHYASLVSVLGYWGFLEEAEETINNMP-FQP-KVSVWRALLDSCRIRL-NTTIGKRVAKHILAMEP 640 (812)
Q Consensus 576 ~~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~p 640 (812)
+...|..+...+.+.|++++|+..|++.. ..| +..+|..+..++...| +.++|...++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 34567888888889999999999888854 566 5678888888899999 79999999999999988
|
... |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.016 Score=61.20 Aligned_cols=118 Identities=10% Similarity=-0.039 Sum_probs=75.7
Q ss_pred CCCChhhHHHHHHHhcCccchHHHHHHHHHHHHh--CCCCchhHHHHHHHHhhhcCCHHHHHHHHccCCC----CChhHH
Q 040319 434 VVPDEIALTSVLGVCGTLGFHEMGKQIHSYALKT--GFSSDLGVANSMVSMYFKCCNMSNAIKAFNKMPS----HDIVSW 507 (812)
Q Consensus 434 ~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~--g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~----~~~~~~ 507 (812)
.+.+...+..+++.+....+++.+..++-..... ....-..+..++|..|.+.|..+.|..+++.=.. ||..++
T Consensus 62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~ 141 (429)
T PF10037_consen 62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSF 141 (429)
T ss_pred CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhH
Confidence 3445556666666666666666666666555543 2222233445677777777777777777655443 777777
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcC
Q 040319 508 NGLIAGHLLHRQGDEALAVWSSMEKASIKPDAITFVLIISAYRY 551 (812)
Q Consensus 508 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~ 551 (812)
|.||..+.+.|++..|.++..+|...+...+..|+..-+.+|.+
T Consensus 142 n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~ 185 (429)
T PF10037_consen 142 NLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYK 185 (429)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHH
Confidence 77777777777777777777777776666666776666666554
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.0047 Score=49.73 Aligned_cols=77 Identities=14% Similarity=0.220 Sum_probs=33.7
Q ss_pred cCChHHHHHHHHHHHHCCCCC---CHHHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCC-cchHHHHHHHHhhcCC
Q 040319 517 HRQGDEALAVWSSMEKASIKP---DAITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPT-SEHYASLVSVLGYWGF 592 (812)
Q Consensus 517 ~g~~~~A~~l~~~m~~~g~~p---d~~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g~ 592 (812)
.|+++.|+.+|+++.+ ..| +...+..+..++.+ .|++++|..+++. .+ ..|+ ....-.+..++.+.|+
T Consensus 2 ~~~y~~Ai~~~~k~~~--~~~~~~~~~~~~~la~~~~~--~~~y~~A~~~~~~-~~---~~~~~~~~~~l~a~~~~~l~~ 73 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLE--LDPTNPNSAYLYNLAQCYFQ--QGKYEEAIELLQK-LK---LDPSNPDIHYLLARCLLKLGK 73 (84)
T ss_dssp TT-HHHHHHHHHHHHH--HHCGTHHHHHHHHHHHHHHH--TTHHHHHHHHHHC-HT---HHHCHHHHHHHHHHHHHHTT-
T ss_pred CccHHHHHHHHHHHHH--HCCCChhHHHHHHHHHHHHH--CCCHHHHHHHHHH-hC---CCCCCHHHHHHHHHHHHHhCC
Confidence 4555556666666555 233 22223334444445 5555555555554 11 1121 1222233455555555
Q ss_pred hHHHHHHHH
Q 040319 593 LEEAEETIN 601 (812)
Q Consensus 593 ~~~A~~~~~ 601 (812)
+++|++.++
T Consensus 74 y~eAi~~l~ 82 (84)
T PF12895_consen 74 YEEAIKALE 82 (84)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 555555544
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.019 Score=58.34 Aligned_cols=142 Identities=16% Similarity=0.167 Sum_probs=88.4
Q ss_pred eHHHHHHHHHcCChhhHHHHHHHhcccCCCCCChhhHHHHHHHhcCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHhh
Q 040319 405 WTSMICGYARSGKPEHAILLFHQSQSEATVVPDEIALTSVLGVCGTLGFHEMGKQIHSYALKTGFSSDLGVANSMVSMYF 484 (812)
Q Consensus 405 ~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~ 484 (812)
|..++...-+.+..+.|..+|.+.++......+.....+.+. +...++.+.|..+++...+. +..+...+...++.+.
T Consensus 4 ~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E-~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l~ 81 (280)
T PF05843_consen 4 WIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALME-YYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFLI 81 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHH-HHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHH
Confidence 444444444444455555555555431112222222222222 12234555567777766654 5667788888999999
Q ss_pred hcCCHHHHHHHHccCCC--CC----hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhc
Q 040319 485 KCCNMSNAIKAFNKMPS--HD----IVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDAITFVLIISAYR 550 (812)
Q Consensus 485 k~g~~~~A~~~f~~~~~--~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~ 550 (812)
+.|+.+.|+.+|++... +. ...|...+.--.+.|+.+.+.++.+++.+ ..|+..++..++.-|.
T Consensus 82 ~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~--~~~~~~~~~~f~~ry~ 151 (280)
T PF05843_consen 82 KLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE--LFPEDNSLELFSDRYS 151 (280)
T ss_dssp HTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH--HTTTS-HHHHHHCCT-
T ss_pred HhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HhhhhhHHHHHHHHhh
Confidence 99999999999998765 33 35899999999999999999999999998 6777666666665443
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.029 Score=46.36 Aligned_cols=79 Identities=14% Similarity=0.076 Sum_probs=62.8
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCC-CCChhhHHHHHHHHHhcCC--------hHHHHHHHHHHHHhCCCCchHHHH
Q 040319 68 TSLISGLAKLGREEEAIELFFRMRSEGI-VPNEHSFVAILTACIRLLE--------LELGFQIHALIVKMGCVDSVFVTN 138 (812)
Q Consensus 68 ~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~~~~~~~ll~~~~~~~~--------~~~a~~~~~~~~~~g~~~~~~~~~ 138 (812)
...|..+...+++.....+|+.+++.|+ .|+..+|+.+|++.++..- +-....++..|+..++.|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 3456677777999999999999999999 8999999999998876532 234566777888888888888888
Q ss_pred HHHHHhhh
Q 040319 139 ALMGLYGK 146 (812)
Q Consensus 139 ~li~~y~~ 146 (812)
.++....+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 87776544
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.031 Score=50.39 Aligned_cols=102 Identities=16% Similarity=0.207 Sum_probs=90.1
Q ss_pred hcCccCCcchHHHHHHHHhhcCChHHHHHHHHhCC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCC--CCc
Q 040319 570 IYNIEPTSEHYASLVSVLGYWGFLEEAEETINNMP---FQPKVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQ--DPA 644 (812)
Q Consensus 570 ~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~---~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~--~~~ 644 (812)
+..+.|+..+--.|...+.+.|+..||...|++.. +.-|......+.++....++...|...++++.+-.|. .+.
T Consensus 82 ~~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd 161 (251)
T COG4700 82 ELAIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD 161 (251)
T ss_pred HHhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC
Confidence 34467898888999999999999999999999865 5668899999999999999999999999999999886 677
Q ss_pred hHHHHHhhhhhCCCcchHHHHHHHHHh
Q 040319 645 TYILVSNLYSSSGRWHNSELVREDMRE 671 (812)
Q Consensus 645 ~~~~l~~~y~~~g~~~~a~~~~~~m~~ 671 (812)
....++..|...|+.++|+.-++..-.
T Consensus 162 ~~Ll~aR~laa~g~~a~Aesafe~a~~ 188 (251)
T COG4700 162 GHLLFARTLAAQGKYADAESAFEVAIS 188 (251)
T ss_pred chHHHHHHHHhcCCchhHHHHHHHHHH
Confidence 888999999999999999998887643
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.031 Score=49.85 Aligned_cols=89 Identities=3% Similarity=-0.096 Sum_probs=40.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH-HhcCCCCchHHHHHHHHHHhhhhcCccCC-cchHHHH
Q 040319 506 SWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDAITFVLIIS-AYRYTNLNLVDSCRKLFLSMKTIYNIEPT-SEHYASL 583 (812)
Q Consensus 506 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~-a~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~l 583 (812)
...++..-+.+.|++++|..+|+-... +.|....|..=|. +|-. .|++++|+..|..... +.|+ +..+-.+
T Consensus 37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~--~Dp~~~~y~~gLG~~~Q~--~g~~~~AI~aY~~A~~---L~~ddp~~~~~a 109 (157)
T PRK15363 37 TLYRYAMQLMEVKEFAGAARLFQLLTI--YDAWSFDYWFRLGECCQA--QKHWGEAIYAYGRAAQ---IKIDAPQAPWAA 109 (157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHH--HhhHHHHHHHHHHHHh---cCCCCchHHHHH
Confidence 333444444555555555555555555 5555533333332 2223 4555555555554433 2222 3334444
Q ss_pred HHHHhhcCChHHHHHHHH
Q 040319 584 VSVLGYWGFLEEAEETIN 601 (812)
Q Consensus 584 i~~l~~~g~~~~A~~~~~ 601 (812)
..++...|+.+.|.+-|+
T Consensus 110 g~c~L~lG~~~~A~~aF~ 127 (157)
T PRK15363 110 AECYLACDNVCYAIKALK 127 (157)
T ss_pred HHHHHHcCCHHHHHHHHH
Confidence 444444444444444433
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=96.49 E-value=1.2 Score=45.43 Aligned_cols=94 Identities=12% Similarity=0.059 Sum_probs=44.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCC-----CHH-HHHHHHHHhcCCCCchHHHHHHHHHHhhhh-cCccCC--cch
Q 040319 509 GLIAGHLLHRQGDEALAVWSSMEKASIKP-----DAI-TFVLIISAYRYTNLNLVDSCRKLFLSMKTI-YNIEPT--SEH 579 (812)
Q Consensus 509 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p-----d~~-t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~-~~~~p~--~~~ 579 (812)
.+...+.+.|++++|+++|++....-... +.. .|...+-.+.. .|++..|.+.|+..... .++..+ -..
T Consensus 160 ~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~--~~D~v~A~~~~~~~~~~~~~F~~s~E~~~ 237 (282)
T PF14938_consen 160 KAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLA--MGDYVAARKALERYCSQDPSFASSREYKF 237 (282)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHH--TT-HHHHHHHHHHHGTTSTTSTTSHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHhhCCCCCCcHHHHH
Confidence 34555666777777777777666533221 111 11112223333 56777777777665531 122222 223
Q ss_pred HHHHHHHHhh--cCChHHHHHHHHhCC
Q 040319 580 YASLVSVLGY--WGFLEEAEETINNMP 604 (812)
Q Consensus 580 y~~li~~l~~--~g~~~~A~~~~~~m~ 604 (812)
...|++++-. ...+++|..-|+++.
T Consensus 238 ~~~l~~A~~~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 238 LEDLLEAYEEGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp HHHHHHHHHTT-CCCHHHHCHHHTTSS
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHcccC
Confidence 3444555432 234566666666654
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.12 Score=49.51 Aligned_cols=139 Identities=13% Similarity=0.042 Sum_probs=99.2
Q ss_pred eHHHHHHHHHcCChhhHHHHHHHhcccCCCCCChhhHHHHHHHhcCccchHHHHHHHHHHHHhCCCCc-----hhHHHHH
Q 040319 405 WTSMICGYARSGKPEHAILLFHQSQSEATVVPDEIALTSVLGVCGTLGFHEMGKQIHSYALKTGFSSD-----LGVANSM 479 (812)
Q Consensus 405 ~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~-----~~~~~~L 479 (812)
-+.++..+.-.|.+.-.+..+++..+ .....+......+.+.--+.|+.+.+...++.+.+..-..+ ..+....
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~-~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIK-YYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHH-hCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 34566666667778888888888877 55555666677777777888999999998887776533333 3333344
Q ss_pred HHHhhhcCCHHHHHHHHccCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 040319 480 VSMYFKCCNMSNAIKAFNKMPS---HDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDAITFVLII 546 (812)
Q Consensus 480 i~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll 546 (812)
...|.-++++..|...|+++.. .|++.-|.-.-.....|+..+|++..+.|++ ..|...+-.+++
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~--~~P~~~l~es~~ 326 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQ--QDPRHYLHESVL 326 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhc--cCCccchhhhHH
Confidence 4567778889999999988775 5566666655556668999999999999998 677765555443
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.0058 Score=41.88 Aligned_cols=41 Identities=24% Similarity=0.475 Sum_probs=37.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHh
Q 040319 611 VWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSN 651 (812)
Q Consensus 611 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 651 (812)
+|..+..++...|+.+.|+++++++++.+|+|+..+..|+.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 57788889999999999999999999999999998888764
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.015 Score=57.96 Aligned_cols=93 Identities=10% Similarity=0.038 Sum_probs=66.5
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHhCC-CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCC---CchHHHHH
Q 040319 579 HYASLVSVLGYWGFLEEAEETINNMP-FQPK----VSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQD---PATYILVS 650 (812)
Q Consensus 579 ~y~~li~~l~~~g~~~~A~~~~~~m~-~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~ 650 (812)
.|..-+..+.+.|++++|...|+.+. ..|+ +..+..+..++...|+.+.|...++++++..|++ +.++..++
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 45555555566677888877777654 3343 2355567777888888888888888888877764 44556668
Q ss_pred hhhhhCCCcchHHHHHHHHHh
Q 040319 651 NLYSSSGRWHNSELVREDMRE 671 (812)
Q Consensus 651 ~~y~~~g~~~~a~~~~~~m~~ 671 (812)
.+|...|++++|.++++...+
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 888888888888888887744
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.036 Score=51.82 Aligned_cols=91 Identities=11% Similarity=0.153 Sum_probs=69.1
Q ss_pred CCChhHHHHHHHHHHh-----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCC--------------CCchHHHHH
Q 040319 501 SHDIVSWNGLIAGHLL-----HRQGDEALAVWSSMEKASIKPDAITFVLIISAYRYT--------------NLNLVDSCR 561 (812)
Q Consensus 501 ~~~~~~~~~li~~~~~-----~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~--------------~~g~~~~a~ 561 (812)
.+|-.+|..++..|.+ .|..+-....++.|.+-|+.-|..+|+.||+.+=+. -..+.+-|+
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i 123 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAI 123 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHH
Confidence 3666666666666654 366666777778888888888888888888876431 023456789
Q ss_pred HHHHHhhhhcCccCCcchHHHHHHHHhhcCC
Q 040319 562 KLFLSMKTIYNIEPTSEHYASLVSVLGYWGF 592 (812)
Q Consensus 562 ~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~ 592 (812)
+++++|.. +|+.||.+++..+++.+|+.+.
T Consensus 124 ~lL~qME~-~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 124 DLLEQMEN-NGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHH-cCCCCcHHHHHHHHHHhccccH
Confidence 99999997 9999999999999999988886
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.0096 Score=46.32 Aligned_cols=65 Identities=17% Similarity=0.133 Sum_probs=53.4
Q ss_pred HHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHH
Q 040319 585 SVLGYWGFLEEAEETINNMP-FQP-KVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILV 649 (812)
Q Consensus 585 ~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 649 (812)
.+|.+.+++++|++.++.+. ..| +...|......+...|+++.|...++++++..|+++......
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~ 69 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALR 69 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHH
Confidence 46788899999999998865 556 566777788888999999999999999999999877655443
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.011 Score=61.96 Aligned_cols=62 Identities=13% Similarity=0.067 Sum_probs=31.9
Q ss_pred cchHHHHHHHHhhcCChHHHHHHHHh-CCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHcc
Q 040319 577 SEHYASLVSVLGYWGFLEEAEETINN-MPFQPKV----SVWRALLDSCRIRLNTTIGKRVAKHILAM 638 (812)
Q Consensus 577 ~~~y~~li~~l~~~g~~~~A~~~~~~-m~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 638 (812)
...|+.+..+|.+.|++++|+..|++ +.+.|+. .+|..+..+|...|+.++|...+++++++
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 44455555555555555555555555 2244432 23555555555555555555555555554
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.042 Score=58.17 Aligned_cols=82 Identities=12% Similarity=0.048 Sum_probs=62.7
Q ss_pred hHHHHHHHHHcCCChhHHHHHHHHhHhcCCCCCCcchHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 040319 168 SWNTVISSVVNEFEYEKAFELFRDMKRDNGFTVDYFTISTLLTACTGCFVLMEGRAVHAHAIRIGLGANLSVNNALIGFY 247 (812)
Q Consensus 168 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~ 247 (812)
|..++|+.|.+.|..+.++.+++.= ...|+-||.+||+.++..+.+.|++..|.++...|...+...+..++.--+..+
T Consensus 105 t~ha~vR~~l~~~~~~~~l~~L~n~-~~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~ 183 (429)
T PF10037_consen 105 THHALVRQCLELGAEDELLELLKNR-LQYGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSC 183 (429)
T ss_pred cHHHHHHHHHhcCCHHHHHHHHhCh-hhcccCCChhhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHH
Confidence 4457888888888888888888776 677888888888888888888888888888888888777666666655555555
Q ss_pred Hhc
Q 040319 248 TKC 250 (812)
Q Consensus 248 ~~~ 250 (812)
.+.
T Consensus 184 ~~~ 186 (429)
T PF10037_consen 184 YKY 186 (429)
T ss_pred HHh
Confidence 444
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.88 Score=46.37 Aligned_cols=145 Identities=10% Similarity=0.082 Sum_probs=80.3
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCC-cchHHHHHHHHhhcCCh
Q 040319 517 HRQGDEALAVWSSMEKASIKPDAI--TFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPT-SEHYASLVSVLGYWGFL 593 (812)
Q Consensus 517 ~g~~~~A~~l~~~m~~~g~~pd~~--t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g~~ 593 (812)
.|+++.|.+-|+-|.. .|... -...|.-.--. .|..+.|.++-+..-. ..|. ...+.+.++..+..|++
T Consensus 133 eG~~~~Ar~kfeAMl~---dPEtRllGLRgLyleAqr--~GareaAr~yAe~Aa~---~Ap~l~WA~~AtLe~r~~~gdW 204 (531)
T COG3898 133 EGDYEDARKKFEAMLD---DPETRLLGLRGLYLEAQR--LGAREAARHYAERAAE---KAPQLPWAARATLEARCAAGDW 204 (531)
T ss_pred cCchHHHHHHHHHHhc---ChHHHHHhHHHHHHHHHh--cccHHHHHHHHHHHHh---hccCCchHHHHHHHHHHhcCCh
Confidence 4566666666666554 22211 11112111223 5666666666555533 3444 34556666667777777
Q ss_pred HHHHHHHHhCC----CCCCHH--HHHHHHHH---HHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCCcchHHH
Q 040319 594 EEAEETINNMP----FQPKVS--VWRALLDS---CRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWHNSEL 664 (812)
Q Consensus 594 ~~A~~~~~~m~----~~p~~~--~~~~ll~~---~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~ 664 (812)
+.|+++++.-. ++||.. .--.||.+ -....+...|.....+..++.|+-...-+.-+..|++.|+..++..
T Consensus 205 d~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ 284 (531)
T COG3898 205 DGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSK 284 (531)
T ss_pred HHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhh
Confidence 77777765532 445432 12223322 2234456667777777777777766666667777777777777777
Q ss_pred HHHHH
Q 040319 665 VREDM 669 (812)
Q Consensus 665 ~~~~m 669 (812)
+++.+
T Consensus 285 ilE~a 289 (531)
T COG3898 285 ILETA 289 (531)
T ss_pred HHHHH
Confidence 77665
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.038 Score=47.45 Aligned_cols=86 Identities=14% Similarity=-0.006 Sum_probs=62.8
Q ss_pred HHHHHhhcCChHHHHHHHHhCC---CC-CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCC---CCchHHHHHhhhh
Q 040319 583 LVSVLGYWGFLEEAEETINNMP---FQ-PK-VSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQ---DPATYILVSNLYS 654 (812)
Q Consensus 583 li~~l~~~g~~~~A~~~~~~m~---~~-p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~y~ 654 (812)
+..++-..|+.++|+.++++.. .. ++ ...+-.+.+.++..|++++|..++++.++-.|+ +......++-.+.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 3445566777777777777643 11 11 335556777788889999999999888888787 6667777888889
Q ss_pred hCCCcchHHHHHHH
Q 040319 655 SSGRWHNSELVRED 668 (812)
Q Consensus 655 ~~g~~~~a~~~~~~ 668 (812)
..|+++||.+..-.
T Consensus 87 ~~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 87 NLGRPKEALEWLLE 100 (120)
T ss_pred HCCCHHHHHHHHHH
Confidence 99999999887654
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.043 Score=51.34 Aligned_cols=106 Identities=12% Similarity=0.177 Sum_probs=79.4
Q ss_pred HHHHHhcC--CCCChhhHHHHHHHHHhc-----CChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC-----------
Q 040319 52 AYKIFYGL--SSPNVVSFTSLISGLAKL-----GREEEAIELFFRMRSEGIVPNEHSFVAILTACIRLL----------- 113 (812)
Q Consensus 52 A~~~f~~~--~~~~~~~~~~li~~~~~~-----g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~----------- 113 (812)
-...|+.. ..+|..+|..+|..|.+. |..+=....+..|.+-|+.-|..+|+.||..+=+..
T Consensus 33 ~~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F 112 (228)
T PF06239_consen 33 HEELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEF 112 (228)
T ss_pred hHHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHh
Confidence 34556665 457888888888888754 566666777888999999999999999998875421
Q ss_pred -----ChHHHHHHHHHHHHhCCCCchHHHHHHHHHhhhcCCCHHHHHHH
Q 040319 114 -----ELELGFQIHALIVKMGCVDSVFVTNALMGLYGKFSFCLDYLLKL 157 (812)
Q Consensus 114 -----~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~~a~~~ 157 (812)
+-+-|..++++|...|+-||..++..|+..+++.+..+...+++
T Consensus 113 ~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p~~K~~rm 161 (228)
T PF06239_consen 113 MHYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSHPMKKYRRM 161 (228)
T ss_pred ccCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccHHHHHHHHH
Confidence 23557888999999999999999999999998877333444443
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.83 Score=49.48 Aligned_cols=226 Identities=18% Similarity=0.157 Sum_probs=115.2
Q ss_pred HHHHHHHHHhcCChHHHHHH--HHHHHHhCCCCchHHHHHHHHHhhhcCCCHHHHHHHHhcCCCCCcchHHHHHHHHHcC
Q 040319 102 FVAILTACIRLLELELGFQI--HALIVKMGCVDSVFVTNALMGLYGKFSFCLDYLLKLFDELPHKDTVSWNTVISSVVNE 179 (812)
Q Consensus 102 ~~~ll~~~~~~~~~~~a~~~--~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~~a~~~f~~~~~~~~~~~~~li~~~~~~ 179 (812)
++..=++|.+.++..--+-+ ++.+.+.|-.|+...... .++-.| .+.+|-++|. ++
T Consensus 601 f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iLlA~---~~Ay~g-KF~EAAklFk------------------~~ 658 (1081)
T KOG1538|consen 601 FETARKAYIRVRDLRYLELISELEERKKRGETPNDLLLAD---VFAYQG-KFHEAAKLFK------------------RS 658 (1081)
T ss_pred hHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHHHHH---HHHhhh-hHHHHHHHHH------------------Hc
Confidence 33344455555444333222 445566676676554332 233344 6667777664 35
Q ss_pred CChhHHHHHHHHhHhcCCCCCCcchHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHH
Q 040319 180 FEYEKAFELFRDMKRDNGFTVDYFTISTLLTACTGCFVLMEGRAVHAHAIRIGLGANLSVNNALIGFYTKCGRVKDVVAL 259 (812)
Q Consensus 180 g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l 259 (812)
|....|+++|.+| +- --..+-+...|+.++-+.+.+.-... ..+..--.+...++...|+.++|..
T Consensus 659 G~enRAlEmyTDl-RM----------FD~aQE~~~~g~~~eKKmL~RKRA~W--Ar~~kePkaAAEmLiSaGe~~KAi~- 724 (1081)
T KOG1538|consen 659 GHENRALEMYTDL-RM----------FDYAQEFLGSGDPKEKKMLIRKRADW--ARNIKEPKAAAEMLISAGEHVKAIE- 724 (1081)
T ss_pred CchhhHHHHHHHH-HH----------HHHHHHHhhcCChHHHHHHHHHHHHH--hhhcCCcHHHHHHhhcccchhhhhh-
Confidence 6666777777777 32 11222333444444433333222111 1111111234455666677776666
Q ss_pred HhcCCCCcchhHHHHHHHHHhhCChhHHHHHhccCCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHH
Q 040319 260 LERMPVMDIITLTEIIIAYMEFGYVDLAVEIFDKMPEKNSVSYNALLAGYCKNGKAMEALGLFVKLLEEGLVLTEFTLTS 339 (812)
Q Consensus 260 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 339 (812)
....+|-.+-+.++-.++...+..+...+..-+.+...+.-|-++|.+|-+.
T Consensus 725 -----------------i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~----------- 776 (1081)
T KOG1538|consen 725 -----------------ICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL----------- 776 (1081)
T ss_pred -----------------hhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccH-----------
Confidence 2334455555555555555444444444444444455555666666655331
Q ss_pred HHHHhccchhhhhHHHHHhhHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCCceeeeHHHHHHHHHcCChh
Q 040319 340 VVNACGLIMEAKLSEQIHGFVMKFGLGSNDCIEAALLDMLTRCGRMADAEKMFYRWPTDRDDSIIWTSMICGYARSGKPE 419 (812)
Q Consensus 340 ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~ 419 (812)
.+++++....+++++|..+-++.+.-.+|+. .....-++...+++
T Consensus 777 ---------------------------------ksiVqlHve~~~W~eAFalAe~hPe~~~dVy--~pyaqwLAE~DrFe 821 (1081)
T KOG1538|consen 777 ---------------------------------KSLVQLHVETQRWDEAFALAEKHPEFKDDVY--MPYAQWLAENDRFE 821 (1081)
T ss_pred ---------------------------------HHHhhheeecccchHhHhhhhhCcccccccc--chHHHHhhhhhhHH
Confidence 2466677788888899888888874344332 22333344555555
Q ss_pred hHHHHHH
Q 040319 420 HAILLFH 426 (812)
Q Consensus 420 ~A~~~~~ 426 (812)
||.+.|.
T Consensus 822 EAqkAfh 828 (1081)
T KOG1538|consen 822 EAQKAFH 828 (1081)
T ss_pred HHHHHHH
Confidence 5555443
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.087 Score=45.23 Aligned_cols=92 Identities=17% Similarity=0.109 Sum_probs=66.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccC-CcchHHHHHH
Q 040319 509 GLIAGHLLHRQGDEALAVWSSMEKASIKPDA--ITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEP-TSEHYASLVS 585 (812)
Q Consensus 509 ~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~--~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~li~ 585 (812)
.+..++-..|+.++|+.+|++....|..++. ..+..+-+.+.. .|++++|..+|+.....+.-.+ +......+..
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~--LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al 83 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRN--LGRYDEALALLEEALEEFPDDELNAALRVFLAL 83 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHHCCCccccHHHHHHHHH
Confidence 3456777889999999999999998877653 456667778888 9999999999998876431111 1222233445
Q ss_pred HHhhcCChHHHHHHHHh
Q 040319 586 VLGYWGFLEEAEETINN 602 (812)
Q Consensus 586 ~l~~~g~~~~A~~~~~~ 602 (812)
++...|+.+||++.+-.
T Consensus 84 ~L~~~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 84 ALYNLGRPKEALEWLLE 100 (120)
T ss_pred HHHHCCCHHHHHHHHHH
Confidence 77888888888877644
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.035 Score=46.79 Aligned_cols=90 Identities=16% Similarity=0.131 Sum_probs=75.1
Q ss_pred HHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCC----CchHHHHHhhhhhCCC
Q 040319 585 SVLGYWGFLEEAEETINNMP-FQP-KVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQD----PATYILVSNLYSSSGR 658 (812)
Q Consensus 585 ~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~----~~~~~~l~~~y~~~g~ 658 (812)
-+++..|+++.|++.|.+.. +-| .+..|+.-..+++.+|+.++|..-+++++++.-+. -.+|+.-+-+|...|+
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 35678899999999998854 444 78899999999999999999999999999985432 2458889999999999
Q ss_pred cchHHHHHHHHHhCCC
Q 040319 659 WHNSELVREDMREKGF 674 (812)
Q Consensus 659 ~~~a~~~~~~m~~~g~ 674 (812)
-+.|..-|+...+.|-
T Consensus 131 dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 131 DDAARADFEAAAQLGS 146 (175)
T ss_pred hHHHHHhHHHHHHhCC
Confidence 9999999988876554
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.015 Score=58.75 Aligned_cols=129 Identities=12% Similarity=0.054 Sum_probs=91.4
Q ss_pred HHHHHHHHHhcCCCCchHHHHHHHHHH---hhhhcCccC-CcchHHHHHHHHhhcCChHHHHHHHHhCC-----C---CC
Q 040319 540 ITFVLIISAYRYTNLNLVDSCRKLFLS---MKTIYNIEP-TSEHYASLVSVLGYWGFLEEAEETINNMP-----F---QP 607 (812)
Q Consensus 540 ~t~~~ll~a~~~~~~g~~~~a~~~~~~---m~~~~~~~p-~~~~y~~li~~l~~~g~~~~A~~~~~~m~-----~---~p 607 (812)
..|..|-.-|.- .|+++.|+...+. +.+++|-.. ....++.+.+++.-.|+++.|.+.++.-. + ..
T Consensus 196 Ra~GnLGNTyYl--LGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~v 273 (639)
T KOG1130|consen 196 RAYGNLGNTYYL--LGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTV 273 (639)
T ss_pred chhcccCceeee--eccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhH
Confidence 345555555555 7899999877663 223344333 24578888888999999999999887632 1 12
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcc----C--CCCCchHHHHHhhhhhCCCcchHHHHHHHHH
Q 040319 608 KVSVWRALLDSCRIRLNTTIGKRVAKHILAM----E--PQDPATYILVSNLYSSSGRWHNSELVREDMR 670 (812)
Q Consensus 608 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~--p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 670 (812)
.+....+|.+.|....+++.|+....+-+.+ + .....++..|++.|...|..+.|..+.+.-.
T Consensus 274 EAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 274 EAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 3556678888888888999998877665543 2 2235678899999999999999988766554
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.90 E-value=3.6 Score=45.29 Aligned_cols=246 Identities=14% Similarity=0.090 Sum_probs=120.5
Q ss_pred ChhhHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHH-CCCCCC--------hhhHHHHHHHHHhcCChHHH
Q 040319 48 HVADAYKIFYGLSSPNVVSFTSLISGLAKLGREEEAIELFFRMRS-EGIVPN--------EHSFVAILTACIRLLELELG 118 (812)
Q Consensus 48 ~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-~g~~p~--------~~~~~~ll~~~~~~~~~~~a 118 (812)
.+++|.+..+.-|.| ..|..|...-...-.++-|...|-+... .|++.- ...-..=+ -+-.|.+++|
T Consensus 678 gledA~qfiEdnPHp--rLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei--~~~~g~feea 753 (1189)
T KOG2041|consen 678 GLEDAIQFIEDNPHP--RLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEI--SAFYGEFEEA 753 (1189)
T ss_pred chHHHHHHHhcCCch--HHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhH--hhhhcchhHh
Confidence 455666665554444 4566665554555555555555544322 122110 00000011 1123555666
Q ss_pred HHHHHHHHHhCCCCchHHHHHHHHHhhhcCCCHHHHHHHHhcCCCC-----CcchHHHHHHHHHcCCChhHHHHHHHHhH
Q 040319 119 FQIHALIVKMGCVDSVFVTNALMGLYGKFSFCLDYLLKLFDELPHK-----DTVSWNTVISSVVNEFEYEKAFELFRDMK 193 (812)
Q Consensus 119 ~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~~a~~~f~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 193 (812)
.+++-.+-+.. .-|.++.+.| +.-...++++..... -..+|+.+-..++....+++|.+.|..-
T Consensus 754 ek~yld~drrD---------LAielr~klg-DwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~- 822 (1189)
T KOG2041|consen 754 EKLYLDADRRD---------LAIELRKKLG-DWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYC- 822 (1189)
T ss_pred hhhhhccchhh---------hhHHHHHhhh-hHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-
Confidence 65555444332 1244555555 555555555443321 1235555555555555555555555433
Q ss_pred hcCCCCCCcchHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCcchhHHH
Q 040319 194 RDNGFTVDYFTISTLLTACTGCFVLMEGRAVHAHAIRIGLGANLSVNNALIGFYTKCGRVKDVVALLERMPVMDIITLTE 273 (812)
Q Consensus 194 ~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~ 273 (812)
.. -...+.++....++++-+.+ ...++-+....-.+.+|+.+.|.-++|.+.+-+-..|. .
T Consensus 823 ~~---------~e~~~ecly~le~f~~LE~l-----a~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~pk-----a 883 (1189)
T KOG2041|consen 823 GD---------TENQIECLYRLELFGELEVL-----ARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRSLPK-----A 883 (1189)
T ss_pred cc---------hHhHHHHHHHHHhhhhHHHH-----HHhcCcccchHHHHHHHHHhhchHHHHHHHHHhccCcH-----H
Confidence 11 01122222222222221111 12245566666677777788887777777665554332 2
Q ss_pred HHHHHHhhCChhHHHHHhccCCCCCcccHH--------------HHHHHHHhCCChHHHHHHHHHHHH
Q 040319 274 IIIAYMEFGYVDLAVEIFDKMPEKNSVSYN--------------ALLAGYCKNGKAMEALGLFVKLLE 327 (812)
Q Consensus 274 li~~~~~~g~~~~A~~~f~~m~~~d~~~~~--------------~li~~~~~~g~~~~A~~l~~~m~~ 327 (812)
-+..+...+++.+|.++-++..-|.+.+.- --|..+.+.|++-+|.+++.+|.+
T Consensus 884 Av~tCv~LnQW~~avelaq~~~l~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae 951 (1189)
T KOG2041|consen 884 AVHTCVELNQWGEAVELAQRFQLPQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAE 951 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhH
Confidence 344566667777777777665544433321 124455666777777777777754
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.055 Score=55.45 Aligned_cols=63 Identities=6% Similarity=0.018 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCCcchHHHHHHHHHh
Q 040319 609 VSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWHNSELVREDMRE 671 (812)
Q Consensus 609 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 671 (812)
..++..|...|.+.+.+..|.....++++++|+|..+.+.-+.+|...|.++.|...++++.+
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k 319 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALK 319 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 345666777788899999999999999999999999999999999999999999999999864
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.31 Score=49.74 Aligned_cols=116 Identities=9% Similarity=-0.056 Sum_probs=61.2
Q ss_pred HHHHHHHHhcCCCCchHHHHHHHHHHhhh---hc-CccCCcchHHHHHHHHhhcCChHHHHHHHHhCC--------CCCC
Q 040319 541 TFVLIISAYRYTNLNLVDSCRKLFLSMKT---IY-NIEPTSEHYASLVSVLGYWGFLEEAEETINNMP--------FQPK 608 (812)
Q Consensus 541 t~~~ll~a~~~~~~g~~~~a~~~~~~m~~---~~-~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~--------~~p~ 608 (812)
.+..+..++.. .|.++.|.+.|+.... +. .-.......-+|.+.|.-...++.|+..+++-. ..-.
T Consensus 237 A~sNlgN~hif--lg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe 314 (639)
T KOG1130|consen 237 AHSNLGNCHIF--LGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGE 314 (639)
T ss_pred hhcccchhhhh--hcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 34444444444 5556666555553321 00 011112233344555555555666666554421 1123
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHccC-----CC-CCchHHHHHhhhhhCCC
Q 040319 609 VSVWRALLDSCRIRLNTTIGKRVAKHILAME-----PQ-DPATYILVSNLYSSSGR 658 (812)
Q Consensus 609 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----p~-~~~~~~~l~~~y~~~g~ 658 (812)
...+.+|.+++...|+.++|...+++.+++. |. ....-..|++.-...|.
T Consensus 315 ~RacwSLgna~~alg~h~kAl~fae~hl~~s~ev~D~sgelTar~Nlsdl~~~lG~ 370 (639)
T KOG1130|consen 315 LRACWSLGNAFNALGEHRKALYFAELHLRSSLEVNDTSGELTARDNLSDLILELGQ 370 (639)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCcchhhhhhhhhHHHHHHhCC
Confidence 4566788999999999999999888877642 22 12234455555555554
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.62 E-value=2.1 Score=44.21 Aligned_cols=50 Identities=8% Similarity=-0.052 Sum_probs=24.3
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCH-----HHHHHHHHHhcCCCCchHHHHHHHHHHhh
Q 040319 515 LLHRQGDEALAVWSSMEKASIKPDA-----ITFVLIISAYRYTNLNLVDSCRKLFLSMK 568 (812)
Q Consensus 515 ~~~g~~~~A~~l~~~m~~~g~~pd~-----~t~~~ll~a~~~~~~g~~~~a~~~~~~m~ 568 (812)
.+.|++.+|.+.|.+.+. +.|+. ..|.....+..+ .|+.++|+.-.+...
T Consensus 260 fk~G~y~~A~E~Yteal~--idP~n~~~naklY~nra~v~~r--Lgrl~eaisdc~~Al 314 (486)
T KOG0550|consen 260 FKNGNYRKAYECYTEALN--IDPSNKKTNAKLYGNRALVNIR--LGRLREAISDCNEAL 314 (486)
T ss_pred hhccchhHHHHHHHHhhc--CCccccchhHHHHHHhHhhhcc--cCCchhhhhhhhhhh
Confidence 345556666666665555 33433 223333333334 555555555554443
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=95.55 E-value=1.1 Score=46.71 Aligned_cols=160 Identities=14% Similarity=0.085 Sum_probs=97.1
Q ss_pred HHHHhhhcCCHHHHHHHHccCCC-CCh------hHHHHHHHHHHh---cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 040319 479 MVSMYFKCCNMSNAIKAFNKMPS-HDI------VSWNGLIAGHLL---HRQGDEALAVWSSMEKASIKPDAITFVLIISA 548 (812)
Q Consensus 479 Li~~y~k~g~~~~A~~~f~~~~~-~~~------~~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a 548 (812)
|+-.|-...+++.-.++++.+.. |+. ..--...-++.+ .|+.++|++++..+....-.++.-|+..+...
T Consensus 147 lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRI 226 (374)
T PF13281_consen 147 LLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRI 226 (374)
T ss_pred HHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence 34457777777777777777765 211 111123334445 67888888888886666666666676665554
Q ss_pred hcC-------CCCchHHHHHHHHHHhhhhcCccCCcchHHHHHHHHhhcCChH----HHHHHH---Hh-----CCCCC--
Q 040319 549 YRY-------TNLNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLE----EAEETI---NN-----MPFQP-- 607 (812)
Q Consensus 549 ~~~-------~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~----~A~~~~---~~-----m~~~p-- 607 (812)
|-. ......++|+..|.+.- .+.|+..+=-.++-++.-+|.-. +..++. .. -...+
T Consensus 227 yKD~~~~s~~~d~~~ldkAi~~Y~kgF---e~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~ 303 (374)
T PF13281_consen 227 YKDLFLESNFTDRESLDKAIEWYRKGF---EIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQ 303 (374)
T ss_pred HHHHHHHcCccchHHHHHHHHHHHHHH---cCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccc
Confidence 321 11345677777776553 35566544444444555555422 222222 11 11233
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCC
Q 040319 608 KVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQ 641 (812)
Q Consensus 608 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~ 641 (812)
|--.+.+++.++...||.+.|.+++++++.+.|.
T Consensus 304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~ 337 (374)
T PF13281_consen 304 DYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPP 337 (374)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCc
Confidence 4445667899999999999999999999999875
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.49 E-value=5.5 Score=44.51 Aligned_cols=301 Identities=13% Similarity=0.030 Sum_probs=153.3
Q ss_pred HhHhccCCchHHHHHHHHHHHhccCCCccchHHHHHHHHccCCh---hhHHHHHhcCCC--CChhhHHHHHHHHHhcCCh
Q 040319 6 RLSVQCGEVSLAKAIHASLIKLLLEQDTRFGNPLISAYLKLGHV---ADAYKIFYGLSS--PNVVSFTSLISGLAKLGRE 80 (812)
Q Consensus 6 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~---~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~ 80 (812)
.-....+.+..|.++-..+...-. ....++.....-+.+..+. +-+..+-+++.. ...++|..+.+--...|++
T Consensus 445 ~Rl~~r~~Y~vaIQva~~l~~p~~-~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~~~~iSy~~iA~~Ay~~GR~ 523 (829)
T KOG2280|consen 445 DRLVDRHLYSVAIQVAKLLNLPES-QGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKLTPGISYAAIARRAYQEGRF 523 (829)
T ss_pred HHHHhcchhHHHHHHHHHhCCccc-cccHHHHHHHHHHHhccCccchHHHHHHHHHhcccCCCceeHHHHHHHHHhcCcH
Confidence 334444566666666554421111 1156666666666665322 223333344444 4556788787777788888
Q ss_pred hHHHHHHHHHHHCC----CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCC----------C-chHHHHHHHHHhh
Q 040319 81 EEAIELFFRMRSEG----IVPNEHSFVAILTACIRLLELELGFQIHALIVKMGCV----------D-SVFVTNALMGLYG 145 (812)
Q Consensus 81 ~~a~~~~~~m~~~g----~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~----------~-~~~~~~~li~~y~ 145 (812)
+-|..+++.=...+ +..+..-+...+.-+...|+.+...+++-++...-.. | ...+|.- |+
T Consensus 524 ~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~~l~~~p~a~~lY~~----~~ 599 (829)
T KOG2280|consen 524 ELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLFMTLRNQPLALSLYRQ----FM 599 (829)
T ss_pred HHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhchhhhHHHHH----HH
Confidence 88888776432222 1123345666777778888888777766655543110 1 1111111 12
Q ss_pred hcCCCHHHHHHHHhcCC-------------------CCCcchHHHHHHHHHcCCC----------hhHHHHHHHHhHhcC
Q 040319 146 KFSFCLDYLLKLFDELP-------------------HKDTVSWNTVISSVVNEFE----------YEKAFELFRDMKRDN 196 (812)
Q Consensus 146 ~~g~~~~~a~~~f~~~~-------------------~~~~~~~~~li~~~~~~g~----------~~~A~~l~~~m~~~~ 196 (812)
|.. +.......++.-. ++-...-......+.+... ...-+.+++.+..+.
T Consensus 600 r~~-~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~ 678 (829)
T KOG2280|consen 600 RHQ-DRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQF 678 (829)
T ss_pred Hhh-chhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 211 1111111111000 0000011112222322222 111122333332233
Q ss_pred CCCCCcchHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCcchhHHHHHH
Q 040319 197 GFTVDYFTISTLLTACTGCFVLMEGRAVHAHAIRIGLGANLSVNNALIGFYTKCGRVKDVVALLERMPVMDIITLTEIII 276 (812)
Q Consensus 197 g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~li~ 276 (812)
|......|.+-.+.-+...|+..+|.++-.+.. -||...|--=+.+++..+++++-+++-+..+. +..|..+..
T Consensus 679 ~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskks--PIGy~PFVe 752 (829)
T KOG2280|consen 679 GGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKKS--PIGYLPFVE 752 (829)
T ss_pred ccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccCC--CCCchhHHH
Confidence 444455556666666666677777766655543 46666666666677777777766655544443 566677777
Q ss_pred HHHhhCChhHHHHHhccCCCCCcccHHHHHHHHHhCCChHHHHHHHH
Q 040319 277 AYMEFGYVDLAVEIFDKMPEKNSVSYNALLAGYCKNGKAMEALGLFV 323 (812)
Q Consensus 277 ~~~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~ 323 (812)
++.+.|+.++|.+.+.+...-. -...+|.+.|++.+|.++--
T Consensus 753 ~c~~~~n~~EA~KYiprv~~l~-----ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 753 ACLKQGNKDEAKKYIPRVGGLQ-----EKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred HHHhcccHHHHhhhhhccCChH-----HHHHHHHHhccHHHHHHHHH
Confidence 7777777777777776654311 45566667777666665543
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=95.30 E-value=0.41 Score=50.58 Aligned_cols=145 Identities=10% Similarity=0.078 Sum_probs=96.5
Q ss_pred hHHHHHHHHHHH-HCCCCCCHHHHHHHHHHhcC--------CCCchHHHHHHHHHHhhhhcCccC-CcchHHHHHHHHhh
Q 040319 520 GDEALAVWSSME-KASIKPDAITFVLIISAYRY--------TNLNLVDSCRKLFLSMKTIYNIEP-TSEHYASLVSVLGY 589 (812)
Q Consensus 520 ~~~A~~l~~~m~-~~g~~pd~~t~~~ll~a~~~--------~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~li~~l~~ 589 (812)
.+.|+.+|.+.. .+.+.|+...-...+.-|.. .......+|.+.-+...+ +.| |......+..+++-
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAve---ld~~Da~a~~~~g~~~~~ 350 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSD---ITTVDGKILAIMGLITGL 350 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHHh
Confidence 367888899988 12277876333222222211 013455666666666654 334 46667777777788
Q ss_pred cCChHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHH--HhhhhhCCCcchHHHH
Q 040319 590 WGFLEEAEETINNMP-FQPK-VSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILV--SNLYSSSGRWHNSELV 665 (812)
Q Consensus 590 ~g~~~~A~~~~~~m~-~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l--~~~y~~~g~~~~a~~~ 665 (812)
.|+++.|..+|++.. +.|| +.+|......+...|+.+.|.+..+++++++|...++-+.- .++|... ..++|.++
T Consensus 351 ~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~-~~~~~~~~ 429 (458)
T PRK11906 351 SGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPN-PLKNNIKL 429 (458)
T ss_pred hcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCC-chhhhHHH
Confidence 888999999999865 6775 56777777778888999999999999999999865554443 3345544 46777776
Q ss_pred HHH
Q 040319 666 RED 668 (812)
Q Consensus 666 ~~~ 668 (812)
+-+
T Consensus 430 ~~~ 432 (458)
T PRK11906 430 YYK 432 (458)
T ss_pred Hhh
Confidence 543
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=95.28 E-value=4.6 Score=42.36 Aligned_cols=162 Identities=11% Similarity=0.059 Sum_probs=101.2
Q ss_pred hccCCchHHHHHHHHHHHhccCCC------ccchHHHHHHHHccCChhhHHHHHhcCCC--CChhhHHHHHHHH--HhcC
Q 040319 9 VQCGEVSLAKAIHASLIKLLLEQD------TRFGNPLISAYLKLGHVADAYKIFYGLSS--PNVVSFTSLISGL--AKLG 78 (812)
Q Consensus 9 ~~~~~~~~a~~~~~~~~~~g~~~~------~~~~~~li~~~~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~--~~~g 78 (812)
..++++.++..+|..+-+.- ..+ -...+.++++|.. .+++.....+....+ | ...|-.|..++ .+.+
T Consensus 17 qkq~~~~esEkifskI~~e~-~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~~~-~s~~l~LF~~L~~Y~~k 93 (549)
T PF07079_consen 17 QKQKKFQESEKIFSKIYDEK-ESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQFG-KSAYLPLFKALVAYKQK 93 (549)
T ss_pred HHHhhhhHHHHHHHHHHHHh-hcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHhh
Confidence 45789999999999887553 222 2345678888864 344444444443332 3 33455555554 4778
Q ss_pred ChhHHHHHHHHHHHC--CCCC------------ChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCC----CCchHHHHHH
Q 040319 79 REEEAIELFFRMRSE--GIVP------------NEHSFVAILTACIRLLELELGFQIHALIVKMGC----VDSVFVTNAL 140 (812)
Q Consensus 79 ~~~~a~~~~~~m~~~--g~~p------------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~----~~~~~~~~~l 140 (812)
.+++|++.+..-.+. +..| |...=+....++...|++.+|+.+++.++..=+ ..++.+|+.+
T Consensus 94 ~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~ 173 (549)
T PF07079_consen 94 EYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRA 173 (549)
T ss_pred hHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHH
Confidence 899999988876654 3222 112224456788899999999999888876544 4788999998
Q ss_pred HHHhhhcCCCHHHHHHHHhcCCCCCcchHHHHHHHHHc
Q 040319 141 MGLYGKFSFCLDYLLKLFDELPHKDTVSWNTVISSVVN 178 (812)
Q Consensus 141 i~~y~~~g~~~~~a~~~f~~~~~~~~~~~~~li~~~~~ 178 (812)
+-++++.= -+ ++-+.+...=..-|-.||..|.+
T Consensus 174 vlmlsrSY-fL----El~e~~s~dl~pdyYemilfY~k 206 (549)
T PF07079_consen 174 VLMLSRSY-FL----ELKESMSSDLYPDYYEMILFYLK 206 (549)
T ss_pred HHHHhHHH-HH----HHHHhcccccChHHHHHHHHHHH
Confidence 88888754 22 22222332223345566666654
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=95.23 E-value=0.13 Score=51.45 Aligned_cols=95 Identities=15% Similarity=0.096 Sum_probs=52.2
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCCcchHHHHHHHHhhc
Q 040319 515 LLHRQGDEALAVWSSMEKASIKPDA----ITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYW 590 (812)
Q Consensus 515 ~~~g~~~~A~~l~~~m~~~g~~pd~----~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~ 590 (812)
...|++++|+..|+.+++ ..|+. ..+..+..++.. .|++++|...|+.+.+.+.-.|
T Consensus 154 ~~~~~y~~Ai~af~~fl~--~yP~s~~a~~A~y~LG~~y~~--~g~~~~A~~~f~~vv~~yP~s~--------------- 214 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVK--KYPDSTYQPNANYWLGQLNYN--KGKKDDAAYYFASVVKNYPKSP--------------- 214 (263)
T ss_pred HhcCCHHHHHHHHHHHHH--HCcCCcchHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHHCCCCc---------------
Confidence 445667777777777766 44553 233334444444 5555555555555544221111
Q ss_pred CChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCc
Q 040319 591 GFLEEAEETINNMPFQPKVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPA 644 (812)
Q Consensus 591 g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 644 (812)
.....|..+...+...|+.+.|...++++++..|+...
T Consensus 215 ----------------~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~ 252 (263)
T PRK10803 215 ----------------KAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDG 252 (263)
T ss_pred ----------------chhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHH
Confidence 01223333444555677777777777777777776543
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.06 E-value=3.6 Score=39.92 Aligned_cols=193 Identities=16% Similarity=0.113 Sum_probs=136.1
Q ss_pred hhHHHHHHHHhhhcCCHHHHHHHHccCC-----CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHH
Q 040319 473 LGVANSMVSMYFKCCNMSNAIKAFNKMP-----SHDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDA-ITFVLII 546 (812)
Q Consensus 473 ~~~~~~Li~~y~k~g~~~~A~~~f~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll 546 (812)
..........+...+.+..+...+.... ......+..+...+...+....+.+.+.........+.. ..+...
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLAL- 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHH-
Confidence 4566667777888888888877776643 244556667777777788888888888888874333322 222221
Q ss_pred HHhcCCCCchHHHHHHHHHHhhhhcCccC----CcchHHHHHHHHhhcCChHHHHHHHHhCC-CCCC--HHHHHHHHHHH
Q 040319 547 SAYRYTNLNLVDSCRKLFLSMKTIYNIEP----TSEHYASLVSVLGYWGFLEEAEETINNMP-FQPK--VSVWRALLDSC 619 (812)
Q Consensus 547 ~a~~~~~~g~~~~a~~~~~~m~~~~~~~p----~~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p~--~~~~~~ll~~~ 619 (812)
.++.. .|.++++...|..... ..| ....+......+...++.++|...+.+.. ..|+ ...+..+...+
T Consensus 138 ~~~~~--~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (291)
T COG0457 138 GALYE--LGDYEEALELYEKALE---LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLY 212 (291)
T ss_pred HHHHH--cCCHHHHHHHHHHHHh---cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHH
Confidence 14556 8889999988888743 333 23344444445667888999998888755 3333 56777888888
Q ss_pred HhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCCcchHHHHHHHHHh
Q 040319 620 RIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWHNSELVREDMRE 671 (812)
Q Consensus 620 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 671 (812)
...++.+.+...+..+++..|.....+..++..+...|+++++.....+...
T Consensus 213 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 213 LKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred HHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 8888999999999999999887666777788888877778888887777643
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.92 E-value=1.3 Score=42.77 Aligned_cols=164 Identities=8% Similarity=-0.006 Sum_probs=86.9
Q ss_pred HHHHHHHhhhcCCHHHHHHHHccCCC--CChhHH--------HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 040319 476 ANSMVSMYFKCCNMSNAIKAFNKMPS--HDIVSW--------NGLIAGHLLHRQGDEALAVWSSMEKASIKPDAITFVLI 545 (812)
Q Consensus 476 ~~~Li~~y~k~g~~~~A~~~f~~~~~--~~~~~~--------~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~l 545 (812)
+++|...|.-..-+++-...|+.-.. ..+..| +.++..+.-+|.+.-.+.++.+.++..-.-+..-...+
T Consensus 139 qesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~L 218 (366)
T KOG2796|consen 139 QESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGL 218 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHH
Confidence 45666666655555555555544332 222333 45666666677788888889988885433444556666
Q ss_pred HHHhcCCCCchHHHHHHHHHHhhhhcCc----cCCcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHH
Q 040319 546 ISAYRYTNLNLVDSCRKLFLSMKTIYNI----EPTSEHYASLVSVLGYWGFLEEAEETINNMP-FQP-KVSVWRALLDSC 619 (812)
Q Consensus 546 l~a~~~~~~g~~~~a~~~~~~m~~~~~~----~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~ 619 (812)
.+.-.+ .|+++.|..+|+...+..+. .-..-.--.+...+.-++++.+|...+.+.+ ..| |+...|.-.-..
T Consensus 219 gr~~MQ--~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcl 296 (366)
T KOG2796|consen 219 GRISMQ--IGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCL 296 (366)
T ss_pred HHHHHh--cccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHH
Confidence 666667 89999999999877653221 1111122222233344445555555555544 222 122111111111
Q ss_pred HhcCCHHHHHHHHHHHHccCCC
Q 040319 620 RIRLNTTIGKRVAKHILAMEPQ 641 (812)
Q Consensus 620 ~~~~~~~~a~~~~~~~~~~~p~ 641 (812)
.-.|+...|.+..+.+.+..|.
T Consensus 297 lYlg~l~DAiK~~e~~~~~~P~ 318 (366)
T KOG2796|consen 297 LYLGKLKDALKQLEAMVQQDPR 318 (366)
T ss_pred HHHHHHHHHHHHHHHHhccCCc
Confidence 1235555555555555555554
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=94.87 E-value=6.9 Score=46.20 Aligned_cols=155 Identities=15% Similarity=0.084 Sum_probs=77.6
Q ss_pred CCHHHHHHHHccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcC--CCCchHHHHHHHH
Q 040319 487 CNMSNAIKAFNKMPSHDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDAITFVLIISAYRY--TNLNLVDSCRKLF 564 (812)
Q Consensus 487 g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~--~~~g~~~~a~~~~ 564 (812)
+++++|+.-+.++. ...|+-.+..--++|.+.+|+.+ .+|+...+..+..+|+. ...+.+++|.-.|
T Consensus 894 ~ry~~AL~hLs~~~---~~~~~e~~n~I~kh~Ly~~aL~l--------y~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Y 962 (1265)
T KOG1920|consen 894 KRYEDALSHLSECG---ETYFPECKNYIKKHGLYDEALAL--------YKPDSEKQKVIYEAYADHLREELMSDEAALMY 962 (1265)
T ss_pred HHHHHHHHHHHHcC---ccccHHHHHHHHhcccchhhhhe--------eccCHHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 55666666665554 22334444444566666666665 45565555444444321 0034444444444
Q ss_pred HHhhhhcCccCCcchHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHccCCCC
Q 040319 565 LSMKTIYNIEPTSEHYASLVSVLGYWGFLEEAEETINNMPFQPKVSVW--RALLDSCRIRLNTTIGKRVAKHILAMEPQD 642 (812)
Q Consensus 565 ~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~~~p~~~~~--~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~ 642 (812)
+..-+ ..--+.+|-.+|++.+|+.+-.++....|...- ..|..-+...+..-+|-.+.+..++
T Consensus 963 e~~Gk----------lekAl~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~s----- 1027 (1265)
T KOG1920|consen 963 ERCGK----------LEKALKAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKILLEYLS----- 1027 (1265)
T ss_pred HHhcc----------HHHHHHHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhc-----
Confidence 43321 011234455666677777666666544444332 4455556655555544444433322
Q ss_pred CchHHHHHhhhhhCCCcchHHHHHHHH
Q 040319 643 PATYILVSNLYSSSGRWHNSELVREDM 669 (812)
Q Consensus 643 ~~~~~~l~~~y~~~g~~~~a~~~~~~m 669 (812)
-...-..+|.+.-.|++|.++-..-
T Consensus 1028 --d~~~av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1028 --DPEEAVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred --CHHHHHHHHhhHhHHHHHHHHHHhc
Confidence 1222344566666777777665443
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=94.85 E-value=0.031 Score=44.13 Aligned_cols=59 Identities=10% Similarity=0.033 Sum_probs=36.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHcc----CCC---CCchHHHHHhhhhhCCCcchHHHHHHHH
Q 040319 611 VWRALLDSCRIRLNTTIGKRVAKHILAM----EPQ---DPATYILVSNLYSSSGRWHNSELVREDM 669 (812)
Q Consensus 611 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~p~---~~~~~~~l~~~y~~~g~~~~a~~~~~~m 669 (812)
+++.+...+...|++++|+..+++++++ .|+ -..++..++.+|...|++++|.+++++.
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a 72 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKA 72 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4444555555555555555555555543 111 2446777888888888888888887765
|
... |
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=94.84 E-value=0.069 Score=48.32 Aligned_cols=61 Identities=21% Similarity=0.256 Sum_probs=52.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCCcchHHHHHHHHHh
Q 040319 611 VWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWHNSELVREDMRE 671 (812)
Q Consensus 611 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 671 (812)
+...++..+...|+.+.|...+++++..+|-+...|..+..+|...|+..+|.+++++++.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4556677788899999999999999999999999999999999999999999999988853
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.69 E-value=0.32 Score=48.10 Aligned_cols=30 Identities=17% Similarity=0.277 Sum_probs=17.2
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 040319 503 DIVSWNGLIAGHLLHRQGDEALAVWSSMEK 532 (812)
Q Consensus 503 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 532 (812)
|...|-.|...|..+|+++.|..-|.+..+
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~r 184 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALR 184 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 445555555555555555555555555555
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=94.61 E-value=0.33 Score=51.21 Aligned_cols=115 Identities=7% Similarity=0.017 Sum_probs=87.4
Q ss_pred hHHHHHHHHHHhhhhcCccCC-cchHHHHHHHHhh---------cCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcC
Q 040319 556 LVDSCRKLFLSMKTIYNIEPT-SEHYASLVSVLGY---------WGFLEEAEETINNMP-FQP-KVSVWRALLDSCRIRL 623 (812)
Q Consensus 556 ~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~---------~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~ 623 (812)
..+.|..+|.+......+.|+ ...|..+..++.. .....+|.++.++.. +.| |+.....+..+....+
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhc
Confidence 466788888888744457776 4455554443321 223556777776644 555 6777777777777788
Q ss_pred CHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCCcchHHHHHHHHH
Q 040319 624 NTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWHNSELVREDMR 670 (812)
Q Consensus 624 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 670 (812)
+.+.|...++++..++|+.+..+...+++..-.|+.++|.+.+++..
T Consensus 353 ~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~al 399 (458)
T PRK11906 353 QAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSL 399 (458)
T ss_pred chhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 89999999999999999999999999999999999999999998853
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=94.52 E-value=0.047 Score=43.03 Aligned_cols=59 Identities=20% Similarity=0.170 Sum_probs=25.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCC--CC---CC-HHHHHHHHHHhcCCCCchHHHHHHHHHHh
Q 040319 507 WNGLIAGHLLHRQGDEALAVWSSMEKAS--IK---PD-AITFVLIISAYRYTNLNLVDSCRKLFLSM 567 (812)
Q Consensus 507 ~~~li~~~~~~g~~~~A~~l~~~m~~~g--~~---pd-~~t~~~ll~a~~~~~~g~~~~a~~~~~~m 567 (812)
++.+...|...|++++|+..|++.++.. .. |+ ..++..+...+.. .|++++|.+++++.
T Consensus 8 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~--~g~~~~A~~~~~~a 72 (78)
T PF13424_consen 8 YNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYR--LGDYEEALEYYQKA 72 (78)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHH--TTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH--cCCHHHHHHHHHHH
Confidence 3444444444444444444444443210 11 11 1334444445555 55555555555544
|
... |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.38 E-value=11 Score=42.31 Aligned_cols=106 Identities=13% Similarity=0.036 Sum_probs=77.0
Q ss_pred HHHHhhhcCCHHHHHHHHccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCchHH
Q 040319 479 MVSMYFKCCNMSNAIKAFNKMPSHDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDAITFVLIISAYRYTNLNLVD 558 (812)
Q Consensus 479 Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~g~~~ 558 (812)
-+.-+..-|+..+|.++-.+..-||-..|--=+.+++..+++++-+++-+.+.. .+-|.....+|.+ .|+.+
T Consensus 690 Tv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAkskks------PIGy~PFVe~c~~--~~n~~ 761 (829)
T KOG2280|consen 690 TVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAKSKKS------PIGYLPFVEACLK--QGNKD 761 (829)
T ss_pred HHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhccCC------CCCchhHHHHHHh--cccHH
Confidence 344456678888888888888888888888888888888888777666555431 4556667778888 88888
Q ss_pred HHHHHHHHhhhhcCccCCcchHHHHHHHHhhcCChHHHHHHHHh
Q 040319 559 SCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLEEAEETINN 602 (812)
Q Consensus 559 ~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~ 602 (812)
||.+++-.... +.-.+.+|.+.|.+.+|.++--+
T Consensus 762 EA~KYiprv~~----------l~ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 762 EAKKYIPRVGG----------LQEKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred HHhhhhhccCC----------hHHHHHHHHHhccHHHHHHHHHH
Confidence 88888754432 22567888888888888776433
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.24 E-value=12 Score=42.45 Aligned_cols=152 Identities=13% Similarity=0.076 Sum_probs=97.4
Q ss_pred HHHHcCCChhHHHHHHHHhHhcCCCCCCcchHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCh
Q 040319 174 SSVVNEFEYEKAFELFRDMKRDNGFTVDYFTISTLLTACTGCFVLMEGRAVHAHAIRIGLGANLSVNNALIGFYTKCGRV 253 (812)
Q Consensus 174 ~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 253 (812)
.-+.+.|++++|...|-+-. .-+.| +.++.-+.....+..--.+++.+.+.|+. +...-+.|+.+|.|.++.
T Consensus 376 d~Ly~Kgdf~~A~~qYI~tI--~~le~-----s~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~ 447 (933)
T KOG2114|consen 376 DYLYGKGDFDEATDQYIETI--GFLEP-----SEVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDV 447 (933)
T ss_pred HHHHhcCCHHHHHHHHHHHc--ccCCh-----HHHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcch
Confidence 34557899999998886541 12233 34555555556666666777788888864 344457799999999999
Q ss_pred HHHHHHHhcCCCCcch--hHHHHHHHHHhhCChhHHHHHhccCCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCC
Q 040319 254 KDVVALLERMPVMDII--TLTEIIIAYMEFGYVDLAVEIFDKMPEKNSVSYNALLAGYCKNGKAMEALGLFVKLLEEGLV 331 (812)
Q Consensus 254 ~~A~~l~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 331 (812)
++-.++.+... .+.. -....+..+.+.+-.++|.-+-.+... +.. .+--.+-..+++++|++.+..|.-...-
T Consensus 448 ~kL~efI~~~~-~g~~~fd~e~al~Ilr~snyl~~a~~LA~k~~~-he~---vl~ille~~~ny~eAl~yi~slp~~e~l 522 (933)
T KOG2114|consen 448 EKLTEFISKCD-KGEWFFDVETALEILRKSNYLDEAELLATKFKK-HEW---VLDILLEDLHNYEEALRYISSLPISELL 522 (933)
T ss_pred HHHHHHHhcCC-CcceeeeHHHHHHHHHHhChHHHHHHHHHHhcc-CHH---HHHHHHHHhcCHHHHHHHHhcCCHHHHH
Confidence 99988888776 2222 345566777777777777776655443 222 2223344567888998888876443333
Q ss_pred CCHhHHH
Q 040319 332 LTEFTLT 338 (812)
Q Consensus 332 p~~~t~~ 338 (812)
+...+|.
T Consensus 523 ~~l~kyG 529 (933)
T KOG2114|consen 523 RTLNKYG 529 (933)
T ss_pred HHHHHHH
Confidence 3333443
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=94.03 E-value=0.27 Score=42.67 Aligned_cols=53 Identities=23% Similarity=0.319 Sum_probs=37.4
Q ss_pred cCccCCcchHHHHHHHHhhcCChHHHHHHHHhCC----CCCCHHHHHHHHHHHHhcC
Q 040319 571 YNIEPTSEHYASLVSVLGYWGFLEEAEETINNMP----FQPKVSVWRALLDSCRIRL 623 (812)
Q Consensus 571 ~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~----~~p~~~~~~~ll~~~~~~~ 623 (812)
..+.|+.....+++.+|+..|++..|+++++... ++-+..+|..|+.-+....
T Consensus 46 spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~s 102 (126)
T PF12921_consen 46 SPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVLS 102 (126)
T ss_pred CCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc
Confidence 4566777888888888888888888888776532 4445778888887655443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=94.03 E-value=0.23 Score=52.32 Aligned_cols=64 Identities=8% Similarity=-0.133 Sum_probs=35.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCch---HHHHHhhhhhCCCcchHHHHHHHHHh
Q 040319 608 KVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPAT---YILVSNLYSSSGRWHNSELVREDMRE 671 (812)
Q Consensus 608 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~---~~~l~~~y~~~g~~~~a~~~~~~m~~ 671 (812)
+...|..+..++...|++++|...++++++++|+++.+ |..++.+|...|+.++|.+.+++..+
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34455555555555555555555555555555555532 55555555555555555555555443
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=93.92 E-value=2.8 Score=41.51 Aligned_cols=59 Identities=12% Similarity=-0.012 Sum_probs=36.1
Q ss_pred HHHHHHHcCCChhHHHHHHHHhHhcCCCCCCcchH----HHHHHHHhcCCChHHHHHHHHHHHHhC
Q 040319 171 TVISSVVNEFEYEKAFELFRDMKRDNGFTVDYFTI----STLLTACTGCFVLMEGRAVHAHAIRIG 232 (812)
Q Consensus 171 ~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~----~~ll~~~~~~~~~~~a~~~~~~~~~~g 232 (812)
.....+.+.|++++|++.|+.+ .. .-|+.... ..+..++-+.++.+.|...++..++.-
T Consensus 37 ~~A~~~~~~g~y~~Ai~~f~~l-~~--~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~ 99 (243)
T PRK10866 37 ATAQQKLQDGNWKQAITQLEAL-DN--RYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN 99 (243)
T ss_pred HHHHHHHHCCCHHHHHHHHHHH-HH--hCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 3445556678888888888877 33 23333221 234455667777777777777777653
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.92 E-value=9.6 Score=39.98 Aligned_cols=133 Identities=11% Similarity=0.079 Sum_probs=91.8
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCCcchH-H
Q 040319 504 IVSWNGLIAGHLLHRQGDEALAVWSSMEKAS-IKPDAITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHY-A 581 (812)
Q Consensus 504 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~pd~~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y-~ 581 (812)
...|-..+..-.+..-.+.|..+|-+..+.| +.|+...+++++.-++. |+...|..+|+.-... -||...| .
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~---~d~~ta~~ifelGl~~---f~d~~~y~~ 470 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT---GDRATAYNIFELGLLK---FPDSTLYKE 470 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc---CCcchHHHHHHHHHHh---CCCchHHHH
Confidence 3456666666666666777778888887777 55666777777776553 7777777777754432 2444333 3
Q ss_pred HHHHHHhhcCChHHHHHHHHhCC--CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCC
Q 040319 582 SLVSVLGYWGFLEEAEETINNMP--FQPK--VSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQD 642 (812)
Q Consensus 582 ~li~~l~~~g~~~~A~~~~~~m~--~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~ 642 (812)
-..+-|.+-++-+.|..+|++.. +..+ ..+|..++.--..-|++..+...-++..++-|+.
T Consensus 471 kyl~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQe 535 (660)
T COG5107 471 KYLLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQE 535 (660)
T ss_pred HHHHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcH
Confidence 45566677788888888887543 3333 5688888888888888888888888888888873
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=93.90 E-value=9.8 Score=43.55 Aligned_cols=48 Identities=21% Similarity=0.256 Sum_probs=34.8
Q ss_pred cchHHHHHHHHHcCCChhHHHHHHHHhHhcCCCCCCcchHHHHHHHHhcCC
Q 040319 166 TVSWNTVISSVVNEFEYEKAFELFRDMKRDNGFTVDYFTISTLLTACTGCF 216 (812)
Q Consensus 166 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~~ 216 (812)
...| ++|-.+.+.|++++|.++.... +.........|...+..+....
T Consensus 112 ~p~W-a~Iyy~LR~G~~~~A~~~~~~~--~~~~~~~~~~f~~~l~~~~~s~ 159 (613)
T PF04097_consen 112 DPIW-ALIYYCLRCGDYDEALEVANEN--RNQFQKIERSFPTYLKAYASSP 159 (613)
T ss_dssp EEHH-HHHHHHHTTT-HHHHHHHHHHT--GGGS-TTTTHHHHHHHHCTTTT
T ss_pred CccH-HHHHHHHhcCCHHHHHHHHHHh--hhhhcchhHHHHHHHHHHHhCC
Confidence 3445 5778889999999999999665 3456677778888899887653
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=93.88 E-value=1 Score=47.79 Aligned_cols=190 Identities=13% Similarity=0.081 Sum_probs=111.4
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCCcchHHHHHHHHhhcCChH
Q 040319 515 LLHRQGDEALAVWSSMEKASIKPDAITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLE 594 (812)
Q Consensus 515 ~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~ 594 (812)
-+..+.+.-+++-++.++ +.||..+-..+|.. -. +..+.++.++|++..+. | . ..|++....+
T Consensus 179 WRERnp~aRIkaA~eALe--i~pdCAdAYILLAE-Ee--A~Ti~Eae~l~rqAvkA-g----E-------~~lg~s~~~~ 241 (539)
T PF04184_consen 179 WRERNPQARIKAAKEALE--INPDCADAYILLAE-EE--ASTIVEAEELLRQAVKA-G----E-------ASLGKSQFLQ 241 (539)
T ss_pred HhcCCHHHHHHHHHHHHH--hhhhhhHHHhhccc-cc--ccCHHHHHHHHHHHHHH-H----H-------Hhhchhhhhh
Confidence 345667777778888888 88988776666543 12 45688899888877651 0 0 0011111000
Q ss_pred ---HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCC--CCchHHHHHhhhhhCCCcchHHHHHHHH
Q 040319 595 ---EAEETINNMPFQPKVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQ--DPATYILVSNLYSSSGRWHNSELVREDM 669 (812)
Q Consensus 595 ---~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~y~~~g~~~~a~~~~~~m 669 (812)
...+.+..-...|-..+-..|...+++.|..++|.+.++.+++..|. +-.....|+..|-..+++.|+..+..+-
T Consensus 242 ~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 242 HHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred cccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 11111111112333445556777788889999999999999887765 4567888999999999999999999887
Q ss_pred HhCCCCCCCceeEEEECCEEEEE-eeCCCCCcc-------hHHHHHHHHHHHHHHHHcCcccC
Q 040319 670 REKGFRKHPSRSWIIHQNKVHSF-YVRDKSHPR-------EKDIYSGLEILILECLKAGYVPD 724 (812)
Q Consensus 670 ~~~g~~~~~~~s~~~~~~~~~~f-~~~~~~~~~-------~~~i~~~l~~l~~~~~~~g~~~~ 724 (812)
.+...+|....+|..- -. .| ..+|+..|+ +......++-+.+.++..-++|.
T Consensus 322 dDi~lpkSAti~YTaA--LL-kaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~ 381 (539)
T PF04184_consen 322 DDISLPKSATICYTAA--LL-KARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPK 381 (539)
T ss_pred ccccCCchHHHHHHHH--HH-HHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCch
Confidence 6554545444433200 00 00 012222221 11223345667777777767664
|
The molecular function of this protein is uncertain. |
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=93.87 E-value=1.7 Score=41.71 Aligned_cols=164 Identities=13% Similarity=0.118 Sum_probs=93.5
Q ss_pred HHHhhhcCCHHHHHHHHccCCC--CC----hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHhcC
Q 040319 480 VSMYFKCCNMSNAIKAFNKMPS--HD----IVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDA--ITFVLIISAYRY 551 (812)
Q Consensus 480 i~~y~k~g~~~~A~~~f~~~~~--~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~--~t~~~ll~a~~~ 551 (812)
...+...|++++|...|+.+.. |+ ....-.++.++-+.|++++|...|++.++ ..|+. ..+...+.+.+.
T Consensus 12 a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~--~yP~~~~~~~A~Y~~g~~~ 89 (203)
T PF13525_consen 12 ALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIK--LYPNSPKADYALYMLGLSY 89 (203)
T ss_dssp HHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH--H-TT-TTHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCCcchhhHHHHHHHHH
Confidence 3445667888888888877764 32 23455667788888888888888888887 55654 333333322221
Q ss_pred -----------CCCchHHHHHHHHHHhhhhcCccCCcchHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHH--HHHHHH
Q 040319 552 -----------TNLNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLEEAEETINNMPFQPKVSVW--RALLDS 618 (812)
Q Consensus 552 -----------~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~~~p~~~~~--~~ll~~ 618 (812)
...+...+|...|+.+.+ -|-......+|...+..+. +...- ..+..-
T Consensus 90 ~~~~~~~~~~~~D~~~~~~A~~~~~~li~----------------~yP~S~y~~~A~~~l~~l~---~~la~~e~~ia~~ 150 (203)
T PF13525_consen 90 YKQIPGILRSDRDQTSTRKAIEEFEELIK----------------RYPNSEYAEEAKKRLAELR---NRLAEHELYIARF 150 (203)
T ss_dssp HHHHHHHH-TT---HHHHHHHHHHHHHHH----------------H-TTSTTHHHHHHHHHHHH---HHHHHHHHHHHHH
T ss_pred HHhCccchhcccChHHHHHHHHHHHHHHH----------------HCcCchHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 012333445555555444 3333444445544443321 00011 113345
Q ss_pred HHhcCCHHHHHHHHHHHHccCCCCC---chHHHHHhhhhhCCCcchHHH
Q 040319 619 CRIRLNTTIGKRVAKHILAMEPQDP---ATYILVSNLYSSSGRWHNSEL 664 (812)
Q Consensus 619 ~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~y~~~g~~~~a~~ 664 (812)
|.+.|...-|..-++.+++--|+.+ .+...++..|.+.|..+.|..
T Consensus 151 Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~~ 199 (203)
T PF13525_consen 151 YYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAADT 199 (203)
T ss_dssp HHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHHH
Confidence 7788999999999999999888754 345678888999998874443
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=93.76 E-value=0.52 Score=40.95 Aligned_cols=97 Identities=12% Similarity=0.132 Sum_probs=68.0
Q ss_pred hhHHHHHHHHhhhcCCHHHHHHHHccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCC
Q 040319 473 LGVANSMVSMYFKCCNMSNAIKAFNKMPSHDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDAITFVLIISAYRYT 552 (812)
Q Consensus 473 ~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~ 552 (812)
..++.+++-++++.|+++....+.+..=..|+ .+-...+. --......|+..+..+++.+|+.
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~-------~~~~~~~~---------~~~~spl~Pt~~lL~AIv~sf~~- 64 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDV-------NGKKKEGD---------YPPSSPLYPTSRLLIAIVHSFGY- 64 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCC-------CCccccCc---------cCCCCCCCCCHHHHHHHHHHHHh-
Confidence 45667777778888888777777765422111 00000110 11123478999999999999998
Q ss_pred CCchHHHHHHHHHHhhhhcCccCCcchHHHHHHHH
Q 040319 553 NLNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVL 587 (812)
Q Consensus 553 ~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l 587 (812)
.|++..|.++.+...+.|+++-+...|..|..-.
T Consensus 65 -n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 65 -NGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred -cccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 9999999999999999999888888888887643
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=93.73 E-value=0.12 Score=32.87 Aligned_cols=32 Identities=9% Similarity=0.058 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHccCCC
Q 040319 610 SVWRALLDSCRIRLNTTIGKRVAKHILAMEPQ 641 (812)
Q Consensus 610 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~ 641 (812)
.+|..+...+...|+.++|+..++++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 46778888889999999999999999999986
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=93.56 E-value=3.4 Score=35.44 Aligned_cols=140 Identities=14% Similarity=0.162 Sum_probs=77.0
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCCcchHHHHHHHHhhcCChH
Q 040319 515 LLHRQGDEALAVWSSMEKASIKPDAITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLE 594 (812)
Q Consensus 515 ~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~ 594 (812)
...|..++..++..+...+. +..-++-++--... .-+-+-..+.++++-+-+.+.|- ...-.+|.+|.+.|...
T Consensus 13 ildG~V~qGveii~k~v~Ss---ni~E~NWvICNiiD--aa~C~yvv~~LdsIGkiFDis~C-~NlKrVi~C~~~~n~~s 86 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNSS---NIKEYNWVICNIID--AADCDYVVETLDSIGKIFDISKC-GNLKRVIECYAKRNKLS 86 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHH--H--HHHHHHHHHHHGGGS-GGG--S-THHHHHHHHHTT---
T ss_pred HHhchHHHHHHHHHHHcCcC---Cccccceeeeecch--hhchhHHHHHHHHHhhhcCchhh-cchHHHHHHHHHhcchH
Confidence 34677788888888776632 22333333311111 12223334444444443333221 11223444454444433
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCCcchHHHHHHHHHhCCC
Q 040319 595 EAEETINNMPFQPKVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWHNSELVREDMREKGF 674 (812)
Q Consensus 595 ~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~ 674 (812)
| ...--|++...+|..++-.+++..+++-+..+|....-+++.|.+.|+..++.+++++.-++|+
T Consensus 87 e---------------~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 87 E---------------YVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp H---------------HHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred H---------------HHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 2 3344566778889999888999888865555688999999999999999999999999988887
Q ss_pred C
Q 040319 675 R 675 (812)
Q Consensus 675 ~ 675 (812)
+
T Consensus 152 k 152 (161)
T PF09205_consen 152 K 152 (161)
T ss_dssp H
T ss_pred H
Confidence 4
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.46 E-value=1.4 Score=45.64 Aligned_cols=94 Identities=14% Similarity=0.087 Sum_probs=73.8
Q ss_pred chHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhh
Q 040319 578 EHYASLVSVLGYWGFLEEAEETINNMP-FQP-KVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSS 655 (812)
Q Consensus 578 ~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~ 655 (812)
..+..+.-++.+.+++.+|++...+.. ..| |.-..--=..+|...|+++.|+..++++++++|+|-.+-..|+.+-.+
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k 337 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQK 337 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 345666777788888888888877754 444 555655666788889999999999999999999999999999888887
Q ss_pred CCCcchH-HHHHHHHHh
Q 040319 656 SGRWHNS-ELVREDMRE 671 (812)
Q Consensus 656 ~g~~~~a-~~~~~~m~~ 671 (812)
..+.++. .+++..|-.
T Consensus 338 ~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 338 IREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 7776655 778888854
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=93.42 E-value=0.19 Score=31.74 Aligned_cols=33 Identities=15% Similarity=0.172 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCC
Q 040319 610 SVWRALLDSCRIRLNTTIGKRVAKHILAMEPQD 642 (812)
Q Consensus 610 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~ 642 (812)
..|..+...+...|+++.|+..++++++++|+|
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 356677777888888888888888888888874
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.40 E-value=0.9 Score=44.17 Aligned_cols=113 Identities=12% Similarity=0.170 Sum_probs=85.1
Q ss_pred hhHHHHHhcCC--CCChhhHHHHHHHHHhc-----CChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC---------
Q 040319 50 ADAYKIFYGLS--SPNVVSFTSLISGLAKL-----GREEEAIELFFRMRSEGIVPNEHSFVAILTACIRLL--------- 113 (812)
Q Consensus 50 ~~A~~~f~~~~--~~~~~~~~~li~~~~~~-----g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~--------- 113 (812)
-..+..|...+ .+|..+|-+++..+... +..+=....+..|.+-|+.-|..+|..||..+-+..
T Consensus 51 v~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~ 130 (406)
T KOG3941|consen 51 VHVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQK 130 (406)
T ss_pred cchhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHH
Confidence 34456677776 68888998888888654 456666677889999999999999999998875432
Q ss_pred -------ChHHHHHHHHHHHHhCCCCchHHHHHHHHHhhhcCCCHHHHHHHHhcCC
Q 040319 114 -------ELELGFQIHALIVKMGCVDSVFVTNALMGLYGKFSFCLDYLLKLFDELP 162 (812)
Q Consensus 114 -------~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~~a~~~f~~~~ 162 (812)
.-.-+..++++|...|+-||..+-..|+..+++.+.......++.--||
T Consensus 131 ~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 131 VFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred HHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence 1233677888999999999999988899999888755555555555555
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.32 E-value=0.78 Score=44.57 Aligned_cols=102 Identities=16% Similarity=0.193 Sum_probs=79.5
Q ss_pred HHHHHccCC--CCChhHHHHHHHHHHhc-----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCC-----------
Q 040319 492 AIKAFNKMP--SHDIVSWNGLIAGHLLH-----RQGDEALAVWSSMEKASIKPDAITFVLIISAYRYTN----------- 553 (812)
Q Consensus 492 A~~~f~~~~--~~~~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~----------- 553 (812)
.+..|.... ++|-.+|-+++..+..+ +..+--...++.|.+-|+.-|..+|..||..+=+.+
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F 132 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVF 132 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHH
Confidence 345666666 57888888888888654 456666777889999999999999999999875411
Q ss_pred ---CchHHHHHHHHHHhhhhcCccCCcchHHHHHHHHhhcCChH
Q 040319 554 ---LNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLE 594 (812)
Q Consensus 554 ---~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~ 594 (812)
-..-+=++.++++|.. +|+.||.++-..++.+++|.|..-
T Consensus 133 ~HYP~QQ~C~I~vLeqME~-hGVmPdkE~e~~lvn~FGr~~~p~ 175 (406)
T KOG3941|consen 133 LHYPQQQNCAIKVLEQMEW-HGVMPDKEIEDILVNAFGRWNFPT 175 (406)
T ss_pred hhCchhhhHHHHHHHHHHH-cCCCCchHHHHHHHHHhccccccH
Confidence 0112347889999996 999999999999999999999743
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=93.12 E-value=0.49 Score=42.72 Aligned_cols=67 Identities=18% Similarity=0.227 Sum_probs=32.8
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhcCCCCchHHHHHHHHHHhh----hhcCccCCcc
Q 040319 508 NGLIAGHLLHRQGDEALAVWSSMEKASIKPD-AITFVLIISAYRYTNLNLVDSCRKLFLSMK----TIYNIEPTSE 578 (812)
Q Consensus 508 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~~~g~~~~a~~~~~~m~----~~~~~~p~~~ 578 (812)
..++..+...|++++|+.+.+++.. ..|- ...+..++.++.. .|+..+|.++|+.+. ++.|+.|+..
T Consensus 66 ~~l~~~~~~~~~~~~a~~~~~~~l~--~dP~~E~~~~~lm~~~~~--~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~ 137 (146)
T PF03704_consen 66 ERLAEALLEAGDYEEALRLLQRALA--LDPYDEEAYRLLMRALAA--QGRRAEALRVYERYRRRLREELGIEPSPE 137 (146)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHH--HSTT-HHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHHHHHS----HH
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHH--CcCHHHHHHHHHHHHHHHHHHhCcCcCHH
Confidence 3344455556666666666666655 4443 3455555666655 666666666555442 2345555543
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=93.11 E-value=2.2 Score=38.03 Aligned_cols=44 Identities=18% Similarity=0.200 Sum_probs=22.9
Q ss_pred HHHHHHhcCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHhhhc
Q 040319 442 TSVLGVCGTLGFHEMGKQIHSYALKTGFSSDLGVANSMVSMYFKC 486 (812)
Q Consensus 442 ~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~ 486 (812)
..++..+...+.......+++.+.+.+ ..+....+.|+..|++.
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~ 54 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHH
Confidence 344555555555555555555555544 24444555555555543
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=92.81 E-value=5.8 Score=42.39 Aligned_cols=92 Identities=13% Similarity=0.119 Sum_probs=47.5
Q ss_pred CchHHHHHHHHHHhhhhcCccCCcchHHHHHHHHhhcCChHHHHHHHHhCC--CCCC--HHHHHHHHHHHHhcCC-----
Q 040319 554 LNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLEEAEETINNMP--FQPK--VSVWRALLDSCRIRLN----- 624 (812)
Q Consensus 554 ~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~--~~p~--~~~~~~ll~~~~~~~~----- 624 (812)
.|..++|++.|+.|.++....-.......|+++|...+++.++..++.+-. .-|. ...|++.|-..+.-++
T Consensus 272 lGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaRav~d~fs~e 351 (539)
T PF04184_consen 272 LGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKARAVGDKFSPE 351 (539)
T ss_pred hCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHHhhccccCch
Confidence 555555555555554432211123344455566666666666666655543 1222 2344444433333332
Q ss_pred ----------HHHHHHHHHHHHccCCCCCch
Q 040319 625 ----------TTIGKRVAKHILAMEPQDPAT 645 (812)
Q Consensus 625 ----------~~~a~~~~~~~~~~~p~~~~~ 645 (812)
...|.++..++++.+|.-+.+
T Consensus 352 ~a~rRGls~ae~~aveAi~RAvefNPHVp~Y 382 (539)
T PF04184_consen 352 AASRRGLSPAEMNAVEAIHRAVEFNPHVPKY 382 (539)
T ss_pred hhhhcCCChhHHHHHHHHHHHHHhCCCCchh
Confidence 123567888899999875543
|
The molecular function of this protein is uncertain. |
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=92.81 E-value=3.3 Score=39.77 Aligned_cols=141 Identities=13% Similarity=0.189 Sum_probs=74.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCCcchHHH
Q 040319 507 WNGLIAGHLLHRQGDEALAVWSSMEKASIKPDA----ITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYAS 582 (812)
Q Consensus 507 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~----~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~ 582 (812)
+-.....+.+.|++.+|++.|+++... -|+. .....+..++-. .|++++|...|+...+.+.-.|... +.-
T Consensus 8 lY~~a~~~~~~g~y~~Ai~~f~~l~~~--~P~s~~a~~A~l~la~a~y~--~~~y~~A~~~~~~fi~~yP~~~~~~-~A~ 82 (203)
T PF13525_consen 8 LYQKALEALQQGDYEEAIKLFEKLIDR--YPNSPYAPQAQLMLAYAYYK--QGDYEEAIAAYERFIKLYPNSPKAD-YAL 82 (203)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH---TTSTTHHHHHHHHHHHHHH--TT-HHHHHHHHHHHHHH-TT-TTHH-HHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHHCCCCcchh-hHH
Confidence 334455667788999999999998873 3432 334445556666 8888888888888877554333321 111
Q ss_pred HHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCc-----------------h
Q 040319 583 LVSVLGYWGFLEEAEETINNMPFQPKVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPA-----------------T 645 (812)
Q Consensus 583 li~~l~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~-----------------~ 645 (812)
...+++.-....... ...+..+....|...++.+++.-|+++- .
T Consensus 83 Y~~g~~~~~~~~~~~-------------------~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~ 143 (203)
T PF13525_consen 83 YMLGLSYYKQIPGIL-------------------RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEH 143 (203)
T ss_dssp HHHHHHHHHHHHHHH--------------------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCccch-------------------hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHH
Confidence 111111100000000 0011122334445555555555555332 2
Q ss_pred HHHHHhhhhhCCCcchHHHHHHHHHh
Q 040319 646 YILVSNLYSSSGRWHNSELVREDMRE 671 (812)
Q Consensus 646 ~~~l~~~y~~~g~~~~a~~~~~~m~~ 671 (812)
-..++..|.+.|+|..|..-++.+.+
T Consensus 144 e~~ia~~Y~~~~~y~aA~~r~~~v~~ 169 (203)
T PF13525_consen 144 ELYIARFYYKRGKYKAAIIRFQYVIE 169 (203)
T ss_dssp HHHHHHHHHCTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 34578899999999999998888754
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=92.72 E-value=6.8 Score=34.88 Aligned_cols=83 Identities=17% Similarity=0.194 Sum_probs=39.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHhhhcCCCHHHHHHHHhcCCCCCcchHHHHHHHHHcCCChhH
Q 040319 105 ILTACIRLLELELGFQIHALIVKMGCVDSVFVTNALMGLYGKFSFCLDYLLKLFDELPHKDTVSWNTVISSVVNEFEYEK 184 (812)
Q Consensus 105 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~~a~~~f~~~~~~~~~~~~~li~~~~~~g~~~~ 184 (812)
++..+...+........++.+.+.+ ..++...+.++..|++.. .......++. ..+......+++.+-+.+.+++
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~--~~~ll~~l~~--~~~~yd~~~~~~~c~~~~l~~~ 87 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD--PQKEIERLDN--KSNHYDIEKVGKLCEKAKLYEE 87 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC--HHHHHHHHHh--ccccCCHHHHHHHHHHcCcHHH
Confidence 3444444444444555555554444 244455556666665543 2333333331 2233334445555555556666
Q ss_pred HHHHHHHh
Q 040319 185 AFELFRDM 192 (812)
Q Consensus 185 A~~l~~~m 192 (812)
+.-++..+
T Consensus 88 ~~~l~~k~ 95 (140)
T smart00299 88 AVELYKKD 95 (140)
T ss_pred HHHHHHhh
Confidence 66666555
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.57 E-value=10 Score=36.51 Aligned_cols=190 Identities=14% Similarity=0.036 Sum_probs=121.8
Q ss_pred HHhcCccchHHHHHHHHHHHHh-CCCCchhHHHHHHHHhhhcCCHHHHHHHHccCCC--CCh-hHHHHHHH-HHHhcCCh
Q 040319 446 GVCGTLGFHEMGKQIHSYALKT-GFSSDLGVANSMVSMYFKCCNMSNAIKAFNKMPS--HDI-VSWNGLIA-GHLLHRQG 520 (812)
Q Consensus 446 ~a~~~~~~~~~a~~~~~~~~~~-g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~--~~~-~~~~~li~-~~~~~g~~ 520 (812)
..+...+....+.......... ........+..+...+...++...+...+..... ++. ..+..... .+...|++
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (291)
T COG0457 67 LALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDY 146 (291)
T ss_pred HHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCH
Confidence 3333444444444443333321 2233444555566666667777777777776554 222 22333333 67888999
Q ss_pred HHHHHHHHHHHHCCCCC----CHHHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccC-CcchHHHHHHHHhhcCChHH
Q 040319 521 DEALAVWSSMEKASIKP----DAITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEP-TSEHYASLVSVLGYWGFLEE 595 (812)
Q Consensus 521 ~~A~~l~~~m~~~g~~p----d~~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~li~~l~~~g~~~~ 595 (812)
+.|...|++... ..| ....+......+.. .+..+++...+...... ... ....+..+...+...|.+++
T Consensus 147 ~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~--~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 220 (291)
T COG0457 147 EEALELYEKALE--LDPELNELAEALLALGALLEA--LGRYEEALELLEKALKL--NPDDDAEALLNLGLLYLKLGKYEE 220 (291)
T ss_pred HHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHH--hcCHHHHHHHHHHHHhh--CcccchHHHHHhhHHHHHcccHHH
Confidence 999999999866 444 22333333333445 77889999988888752 222 36778888888888999999
Q ss_pred HHHHHHhCC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCC
Q 040319 596 AEETINNMP-FQPK-VSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQ 641 (812)
Q Consensus 596 A~~~~~~m~-~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~ 641 (812)
|...+.... ..|+ ...+..+...+...++.+.+.....+.++..|.
T Consensus 221 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 221 ALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 999888765 4554 455666666666777899999999999999886
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=92.52 E-value=0.66 Score=46.72 Aligned_cols=162 Identities=9% Similarity=-0.005 Sum_probs=82.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHH-CCCCCCH-HHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCcc--C--Ccch
Q 040319 506 SWNGLIAGHLLHRQGDEALAVWSSMEK-ASIKPDA-ITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIE--P--TSEH 579 (812)
Q Consensus 506 ~~~~li~~~~~~g~~~~A~~l~~~m~~-~g~~pd~-~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~--p--~~~~ 579 (812)
+|-.+..++-+.-++.+++.+-+.-.. .|..|.. --+..+.-+-++...+.++++.+.|+...+-..-. | ...+
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqv 164 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQV 164 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeeh
Confidence 344455555555555555554443332 1233311 11222222222322566777777777665411111 1 2456
Q ss_pred HHHHHHHHhhcCChHHHHHHHHhC-------CCCCCHHHH-----HHHHHHHHhcCCHHHHHHHHHHHHcc--CCCCC--
Q 040319 580 YASLVSVLGYWGFLEEAEETINNM-------PFQPKVSVW-----RALLDSCRIRLNTTIGKRVAKHILAM--EPQDP-- 643 (812)
Q Consensus 580 y~~li~~l~~~g~~~~A~~~~~~m-------~~~p~~~~~-----~~ll~~~~~~~~~~~a~~~~~~~~~~--~p~~~-- 643 (812)
|..|..+|++..++++|.-+..+. .++.-..-| ..+.-+++..|.+..|.+..+++.++ ...|.
T Consensus 165 cv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~ 244 (518)
T KOG1941|consen 165 CVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRAL 244 (518)
T ss_pred hhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHH
Confidence 777777777777777665544332 222211222 22334677777777777776666543 22222
Q ss_pred --chHHHHHhhhhhCCCcchHHHHHH
Q 040319 644 --ATYILVSNLYSSSGRWHNSELVRE 667 (812)
Q Consensus 644 --~~~~~l~~~y~~~g~~~~a~~~~~ 667 (812)
.....+++||...|+.|.|..-++
T Consensus 245 ~arc~~~~aDIyR~~gd~e~af~rYe 270 (518)
T KOG1941|consen 245 QARCLLCFADIYRSRGDLERAFRRYE 270 (518)
T ss_pred HHHHHHHHHHHHHhcccHhHHHHHHH
Confidence 234467788888887776654433
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=92.32 E-value=14 Score=37.44 Aligned_cols=76 Identities=7% Similarity=-0.077 Sum_probs=46.3
Q ss_pred CCchhHHHHHHHHhhhcCCHHHHHHHHccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHh
Q 040319 470 SSDLGVANSMVSMYFKCCNMSNAIKAFNKMPSHDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDAITFVLIISAY 549 (812)
Q Consensus 470 ~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~ 549 (812)
.++..+-..-+.++++.|+.+..-.+.+.+..+++ .-..+.++...|.. +|+..+.++.. -.||...-...+.+|
T Consensus 203 D~~~~VR~~A~~aLg~~~~~~av~~Li~~L~~~~~--~~~a~~ALg~ig~~-~a~p~L~~l~~--~~~d~~v~~~a~~a~ 277 (280)
T PRK09687 203 DKNEEIRIEAIIGLALRKDKRVLSVLIKELKKGTV--GDLIIEAAGELGDK-TLLPVLDTLLY--KFDDNEIITKAIDKL 277 (280)
T ss_pred CCChHHHHHHHHHHHccCChhHHHHHHHHHcCCch--HHHHHHHHHhcCCH-hHHHHHHHHHh--hCCChhHHHHHHHHH
Confidence 34555666667777777775443444444444442 33566777777775 68888888876 455666555555555
Q ss_pred c
Q 040319 550 R 550 (812)
Q Consensus 550 ~ 550 (812)
.
T Consensus 278 ~ 278 (280)
T PRK09687 278 K 278 (280)
T ss_pred h
Confidence 3
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=92.20 E-value=0.54 Score=45.97 Aligned_cols=89 Identities=15% Similarity=0.242 Sum_probs=59.2
Q ss_pred HHHHHHHHhhcCChHHHHHHHHhC----C---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCC---CchHHHH
Q 040319 580 YASLVSVLGYWGFLEEAEETINNM----P---FQPKVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQD---PATYILV 649 (812)
Q Consensus 580 y~~li~~l~~~g~~~~A~~~~~~m----~---~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l 649 (812)
|+.-+++| ..|++.+|.+.|... | ..||+.-| |..++...|+++.|...+..+.+-.|+. |..+.-|
T Consensus 145 Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yW--LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 145 YNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYW--LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred HHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHH--HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 44333332 345566665555442 2 44566555 6777778888888888888877766553 4567788
Q ss_pred HhhhhhCCCcchHHHHHHHHHh
Q 040319 650 SNLYSSSGRWHNSELVREDMRE 671 (812)
Q Consensus 650 ~~~y~~~g~~~~a~~~~~~m~~ 671 (812)
+.+..+.|+.++|..++++..+
T Consensus 222 g~~~~~l~~~d~A~atl~qv~k 243 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQVIK 243 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHHHH
Confidence 8888888888888888887744
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=92.00 E-value=1.7 Score=38.27 Aligned_cols=70 Identities=14% Similarity=0.116 Sum_probs=48.5
Q ss_pred HhhcCChHHHHHHHHhCC----CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCch---HHHHHhhhhhC
Q 040319 587 LGYWGFLEEAEETINNMP----FQP-KVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPAT---YILVSNLYSSS 656 (812)
Q Consensus 587 l~~~g~~~~A~~~~~~m~----~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~---~~~l~~~y~~~ 656 (812)
..+.|++++|.+.|+.+. ..| ....-..|+.++.+.++++.|...+++.+++.|.++.+ +...+-.+...
T Consensus 20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~ 97 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQ 97 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHH
Confidence 345677777777776653 333 34556668888999999999999999999999987653 33344344443
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=91.53 E-value=1.9 Score=46.69 Aligned_cols=106 Identities=15% Similarity=0.114 Sum_probs=64.1
Q ss_pred HHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCCcchHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 040319 542 FVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLEEAEETINNMPFQPKVSVWRALLDSCRI 621 (812)
Q Consensus 542 ~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~ 621 (812)
...++.-+.+ .|..+.|+++-+.-.. -.++..+.|+++.|.++.++.. +...|..|...+..
T Consensus 298 ~~~i~~fL~~--~G~~e~AL~~~~D~~~-------------rFeLAl~lg~L~~A~~~a~~~~---~~~~W~~Lg~~AL~ 359 (443)
T PF04053_consen 298 GQSIARFLEK--KGYPELALQFVTDPDH-------------RFELALQLGNLDIALEIAKELD---DPEKWKQLGDEALR 359 (443)
T ss_dssp HHHHHHHHHH--TT-HHHHHHHSS-HHH-------------HHHHHHHCT-HHHHHHHCCCCS---THHHHHHHHHHHHH
T ss_pred HHHHHHHHHH--CCCHHHHHhhcCChHH-------------HhHHHHhcCCHHHHHHHHHhcC---cHHHHHHHHHHHHH
Confidence 3444444444 6666666655332211 2345566777777777766643 66688888888888
Q ss_pred cCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCCcchHHHHHHHHHhCC
Q 040319 622 RLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWHNSELVREDMREKG 673 (812)
Q Consensus 622 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g 673 (812)
+||++.|+.+++++ .-+..|.-+|...|+-+.-.++-+....+|
T Consensus 360 ~g~~~lAe~c~~k~--------~d~~~L~lLy~~~g~~~~L~kl~~~a~~~~ 403 (443)
T PF04053_consen 360 QGNIELAEECYQKA--------KDFSGLLLLYSSTGDREKLSKLAKIAEERG 403 (443)
T ss_dssp TTBHHHHHHHHHHC--------T-HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHhh--------cCccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 88888888877763 346667777888887766666665554443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=91.39 E-value=3.5 Score=40.92 Aligned_cols=114 Identities=16% Similarity=0.082 Sum_probs=78.6
Q ss_pred CchHHHHHHHHHHhhhhcCccCCcchHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHH---HHHHHhcCCHHHHHH
Q 040319 554 LNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLEEAEETINNMPFQPKVSVWRAL---LDSCRIRLNTTIGKR 630 (812)
Q Consensus 554 ~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~~~p~~~~~~~l---l~~~~~~~~~~~a~~ 630 (812)
.|+..++...|+...... .-+.+.--.|+.+|...|+.++|..++..+|.+-...-|..+ +.......+.... .
T Consensus 147 ~e~~~~a~~~~~~al~~~--~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~-~ 223 (304)
T COG3118 147 AEDFGEAAPLLKQALQAA--PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEI-Q 223 (304)
T ss_pred ccchhhHHHHHHHHHHhC--cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCH-H
Confidence 688888888888776521 223566778889999999999999999999844333333331 2222222222211 1
Q ss_pred HHHHHHccCCCCCchHHHHHhhhhhCCCcchHHHHHHHHH
Q 040319 631 VAKHILAMEPQDPATYILVSNLYSSSGRWHNSELVREDMR 670 (812)
Q Consensus 631 ~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 670 (812)
.+++-+.-+|+|...-..|+..|...|+.++|.+.+-.+.
T Consensus 224 ~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l 263 (304)
T COG3118 224 DLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALL 263 (304)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 2445556799999999999999999999999988766653
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=91.37 E-value=10 Score=41.21 Aligned_cols=155 Identities=20% Similarity=0.106 Sum_probs=93.9
Q ss_pred HHhcCChhHHHHHHH-HHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHhhhcCCCHH
Q 040319 74 LAKLGREEEAIELFF-RMRSEGIVPNEHSFVAILTACIRLLELELGFQIHALIVKMGCVDSVFVTNALMGLYGKFSFCLD 152 (812)
Q Consensus 74 ~~~~g~~~~a~~~~~-~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~ 152 (812)
..-+++++++.++.. .-.-..+ +......+++-+-+.|-.+.|.++-.. + ..-.....++| +++
T Consensus 271 av~~~d~~~v~~~i~~~~ll~~i--~~~~~~~i~~fL~~~G~~e~AL~~~~D---------~---~~rFeLAl~lg-~L~ 335 (443)
T PF04053_consen 271 AVLRGDFEEVLRMIAASNLLPNI--PKDQGQSIARFLEKKGYPELALQFVTD---------P---DHRFELALQLG-NLD 335 (443)
T ss_dssp HHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS----------H---HHHHHHHHHCT--HH
T ss_pred HHHcCChhhhhhhhhhhhhcccC--ChhHHHHHHHHHHHCCCHHHHHhhcCC---------h---HHHhHHHHhcC-CHH
Confidence 345677777665554 1111111 244466677777777777777664322 1 12234455677 999
Q ss_pred HHHHHHhcCCCCCcchHHHHHHHHHcCCChhHHHHHHHHhHhcCCCCCCcchHHHHHHHHhcCCChHHHHHHHHHHHHhC
Q 040319 153 YLLKLFDELPHKDTVSWNTVISSVVNEFEYEKAFELFRDMKRDNGFTVDYFTISTLLTACTGCFVLMEGRAVHAHAIRIG 232 (812)
Q Consensus 153 ~a~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g 232 (812)
.|.++.++.. +...|..|-....++|+++-|.+.|... .. |..|+-.+...|+.+.-.++.......|
T Consensus 336 ~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~-~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~ 403 (443)
T PF04053_consen 336 IALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKA-KD---------FSGLLLLYSSTGDREKLSKLAKIAEERG 403 (443)
T ss_dssp HHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHC-T----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhh-cC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 9999887766 5669999999999999999999999887 32 5666666777788877777777766655
Q ss_pred CCCchhHHHHHHHHHHhcCChHHHHHHHh
Q 040319 233 LGANLSVNNALIGFYTKCGRVKDVVALLE 261 (812)
Q Consensus 233 ~~~~~~~~~~li~~~~~~g~~~~A~~l~~ 261 (812)
- +|....++.-.|++++..++|.
T Consensus 404 ~------~n~af~~~~~lgd~~~cv~lL~ 426 (443)
T PF04053_consen 404 D------INIAFQAALLLGDVEECVDLLI 426 (443)
T ss_dssp -------HHHHHHHHHHHT-HHHHHHHHH
T ss_pred C------HHHHHHHHHHcCCHHHHHHHHH
Confidence 2 3444445555677777666443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=91.37 E-value=6.8 Score=43.14 Aligned_cols=115 Identities=17% Similarity=0.080 Sum_probs=69.3
Q ss_pred CchHHHHHHHHHHhhhhcCccCCcchHHHH-HHHHhhcCChHHHHHHHHhCC-----C-CCCHHHHHHHHHHHHhcCCHH
Q 040319 554 LNLVDSCRKLFLSMKTIYNIEPTSEHYASL-VSVLGYWGFLEEAEETINNMP-----F-QPKVSVWRALLDSCRIRLNTT 626 (812)
Q Consensus 554 ~g~~~~a~~~~~~m~~~~~~~p~~~~y~~l-i~~l~~~g~~~~A~~~~~~m~-----~-~p~~~~~~~ll~~~~~~~~~~ 626 (812)
....+.|.++++.+.+.| |+...|.-. ...+...|++++|++.+++.. . +-....+--+...+....+.+
T Consensus 246 ~~~~~~a~~lL~~~~~~y---P~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~ 322 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKRY---PNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWE 322 (468)
T ss_pred CCCHHHHHHHHHHHHHhC---CCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHH
Confidence 345555666666665533 444333322 244455666666666666532 0 112334445556677788888
Q ss_pred HHHHHHHHHHccCCCCCc-hHHHHHhhhhhCCCc-------chHHHHHHHHHh
Q 040319 627 IGKRVAKHILAMEPQDPA-TYILVSNLYSSSGRW-------HNSELVREDMRE 671 (812)
Q Consensus 627 ~a~~~~~~~~~~~p~~~~-~~~~l~~~y~~~g~~-------~~a~~~~~~m~~ 671 (812)
+|...+.++.+...-... ++...+-+|...|+. ++|.+++.+.+.
T Consensus 323 ~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 323 EAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 888888888887655333 345567778888888 777777777644
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=91.33 E-value=3.3 Score=42.17 Aligned_cols=95 Identities=14% Similarity=0.206 Sum_probs=56.7
Q ss_pred HHHHHHHHccCCC-------CChhHHHHHHHHHHhcCC----hHHHHHHHHHHHHCCCCCCH--HHHHHHHHHhcCCCCc
Q 040319 489 MSNAIKAFNKMPS-------HDIVSWNGLIAGHLLHRQ----GDEALAVWSSMEKASIKPDA--ITFVLIISAYRYTNLN 555 (812)
Q Consensus 489 ~~~A~~~f~~~~~-------~~~~~~~~li~~~~~~g~----~~~A~~l~~~m~~~g~~pd~--~t~~~ll~a~~~~~~g 555 (812)
...|..+|+.|.+ ++-..+.+|+.. ..++ .+.+...|+.+...|+..+. .....+|..+......
T Consensus 119 ~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~ 196 (297)
T PF13170_consen 119 IQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQE 196 (297)
T ss_pred HHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchH
Confidence 3445556666554 333444444433 2222 25677888888888887765 3334444433321122
Q ss_pred hHHHHHHHHHHhhhhcCccCCcchHHHHHHH
Q 040319 556 LVDSCRKLFLSMKTIYNIEPTSEHYASLVSV 586 (812)
Q Consensus 556 ~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~ 586 (812)
.+..+.++++.+++ .|+++...+|..+.-+
T Consensus 197 ~v~r~~~l~~~l~~-~~~kik~~~yp~lGlL 226 (297)
T PF13170_consen 197 KVARVIELYNALKK-NGVKIKYMHYPTLGLL 226 (297)
T ss_pred HHHHHHHHHHHHHH-cCCccccccccHHHHH
Confidence 35678888888887 6899998888876543
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=91.31 E-value=19 Score=42.79 Aligned_cols=161 Identities=17% Similarity=0.131 Sum_probs=87.8
Q ss_pred CChhHHHHHhccCCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHhccchhhhhHHHHHhhHH
Q 040319 282 GYVDLAVEIFDKMPEKNSVSYNALLAGYCKNGKAMEALGLFVKLLEEGLVLTEFTLTSVVNACGLIMEAKLSEQIHGFVM 361 (812)
Q Consensus 282 g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~ 361 (812)
+++++|+.-+.++. ...|.-.+.---+.|.+.+|+.++ +|+...+..+..+|+.. +.
T Consensus 894 ~ry~~AL~hLs~~~---~~~~~e~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~h------------L~ 950 (1265)
T KOG1920|consen 894 KRYEDALSHLSECG---ETYFPECKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYADH------------LR 950 (1265)
T ss_pred HHHHHHHHHHHHcC---ccccHHHHHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHHH------------HH
Confidence 56667776666664 335556666667778888888776 46777766666554321 11
Q ss_pred HhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCCceeeeHHHHHHHHHcCChhhHHHHHHHhcccCCCCCChhh-
Q 040319 362 KFGLGSNDCIEAALLDMLTRCGRMADAEKMFYRWPTDRDDSIIWTSMICGYARSGKPEHAILLFHQSQSEATVVPDEIA- 440 (812)
Q Consensus 362 ~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t- 440 (812)
+. ..++--.-+|.++|+.++|.+.++. +|++.+|+.+-.++.. .-|...
T Consensus 951 ~~------~~~~~Aal~Ye~~GklekAl~a~~~--------------------~~dWr~~l~~a~ql~~----~~de~~~ 1000 (1265)
T KOG1920|consen 951 EE------LMSDEAALMYERCGKLEKALKAYKE--------------------CGDWREALSLAAQLSE----GKDELVI 1000 (1265)
T ss_pred Hh------ccccHHHHHHHHhccHHHHHHHHHH--------------------hccHHHHHHHHHhhcC----CHHHHHH
Confidence 11 1112223457777777777666543 4566677766665543 112111
Q ss_pred -HHHHHHHhcCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHhhhcCCHHHHHHHHccCCCCC
Q 040319 441 -LTSVLGVCGTLGFHEMGKQIHSYALKTGFSSDLGVANSMVSMYFKCCNMSNAIKAFNKMPSHD 503 (812)
Q Consensus 441 -~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~ 503 (812)
-..|..-+...+.+-+|-++...... . ..--+..|++...+++|.++-......|
T Consensus 1001 ~a~~L~s~L~e~~kh~eAa~il~e~~s---d-----~~~av~ll~ka~~~~eAlrva~~~~~~d 1056 (1265)
T KOG1920|consen 1001 LAEELVSRLVEQRKHYEAAKILLEYLS---D-----PEEAVALLCKAKEWEEALRVASKAKRDD 1056 (1265)
T ss_pred HHHHHHHHHHHcccchhHHHHHHHHhc---C-----HHHHHHHHhhHhHHHHHHHHHHhcccch
Confidence 12344444444544444444333221 1 1233566777788888887766555433
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.26 E-value=7 Score=37.57 Aligned_cols=87 Identities=11% Similarity=0.049 Sum_probs=47.0
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHhCC-------CCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHcc----CCCCCchH
Q 040319 579 HYASLVSVLGYWGFLEEAEETINNMP-------FQPKV-SVWRALLDSCRIRLNTTIGKRVAKHILAM----EPQDPATY 646 (812)
Q Consensus 579 ~y~~li~~l~~~g~~~~A~~~~~~m~-------~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~p~~~~~~ 646 (812)
.|.....+|.|..+++||-..+.+-. .-|+. ..+-+.+-.+....|+..|++.++...++ .|++..+.
T Consensus 152 l~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~l 231 (308)
T KOG1585|consen 152 LYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSL 231 (308)
T ss_pred HHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHH
Confidence 34445556667777777665554432 12222 12333444445556777777777765553 35555555
Q ss_pred HHHHhhhhhCCCcchHHHHH
Q 040319 647 ILVSNLYSSSGRWHNSELVR 666 (812)
Q Consensus 647 ~~l~~~y~~~g~~~~a~~~~ 666 (812)
..|...| ..|+.|++.++.
T Consensus 232 enLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 232 ENLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHHHHHh-ccCCHHHHHHHH
Confidence 5565555 346666555543
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=91.07 E-value=10 Score=34.62 Aligned_cols=135 Identities=13% Similarity=0.124 Sum_probs=88.0
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchH-HHHHHHHHhhhcCCCHHHHHHHHhcCC
Q 040319 84 IELFFRMRSEGIVPNEHSFVAILTACIRLLELELGFQIHALIVKMGCVDSVF-VTNALMGLYGKFSFCLDYLLKLFDELP 162 (812)
Q Consensus 84 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~-~~~~li~~y~~~g~~~~~a~~~f~~~~ 162 (812)
+++.+.+.+.+++|+...+..+++.+.+.|.... +.+++..++-+|.. +...|++.-.+.......+..++.++.
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~----L~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~ 89 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQ----LHQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG 89 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh
Confidence 4566777788999999999999999999988654 44555666655544 444444433322112344455555544
Q ss_pred CCCcchHHHHHHHHHcCCChhHHHHHHHHhHhcCCCCCCcchHHHHHHHHhcCCChHHHHHHHHHHHHh
Q 040319 163 HKDTVSWNTVISSVVNEFEYEKAFELFRDMKRDNGFTVDYFTISTLLTACTGCFVLMEGRAVHAHAIRI 231 (812)
Q Consensus 163 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 231 (812)
..+..++..+...|++-+|+++.+.. .. -+......++.+..+.+|...-..++......
T Consensus 90 ----~~~~~iievLL~~g~vl~ALr~ar~~-~~----~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~ 149 (167)
T PF07035_consen 90 ----TAYEEIIEVLLSKGQVLEALRYARQY-HK----VDSVPARKFLEAAANSNDDQLFYAVFRFFEER 149 (167)
T ss_pred ----hhHHHHHHHHHhCCCHHHHHHHHHHc-CC----cccCCHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 35667888999999999999999875 22 23333456677777777666655666655543
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=90.83 E-value=5.6 Score=43.79 Aligned_cols=79 Identities=15% Similarity=0.081 Sum_probs=44.5
Q ss_pred cchHHHHHHHHHHHHhCCCCchhHH-HHHHHHhhhcCCHHHHHHHHccCCC-----C--ChhHHHHHHHHHHhcCChHHH
Q 040319 452 GFHEMGKQIHSYALKTGFSSDLGVA-NSMVSMYFKCCNMSNAIKAFNKMPS-----H--DIVSWNGLIAGHLLHRQGDEA 523 (812)
Q Consensus 452 ~~~~~a~~~~~~~~~~g~~~~~~~~-~~Li~~y~k~g~~~~A~~~f~~~~~-----~--~~~~~~~li~~~~~~g~~~~A 523 (812)
...+.+.+++..+.+.- |+...+ ---..++...|++++|.+.|++... | ....+--+...+...+++++|
T Consensus 247 ~~~~~a~~lL~~~~~~y--P~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A 324 (468)
T PF10300_consen 247 VPLEEAEELLEEMLKRY--PNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEA 324 (468)
T ss_pred CCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHH
Confidence 35566666666665532 332222 2234556667777777777775432 1 112233344456667777777
Q ss_pred HHHHHHHHH
Q 040319 524 LAVWSSMEK 532 (812)
Q Consensus 524 ~~l~~~m~~ 532 (812)
.+.|.++.+
T Consensus 325 ~~~f~~L~~ 333 (468)
T PF10300_consen 325 AEYFLRLLK 333 (468)
T ss_pred HHHHHHHHh
Confidence 777777776
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.70 E-value=5.2 Score=40.15 Aligned_cols=114 Identities=13% Similarity=0.072 Sum_probs=51.9
Q ss_pred cCCHHHHHHHHccCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHhcCCCCchHHHH
Q 040319 486 CCNMSNAIKAFNKMPS---HDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDA--ITFVLIISAYRYTNLNLVDSC 560 (812)
Q Consensus 486 ~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~--~t~~~ll~a~~~~~~g~~~~a 560 (812)
.|+..+|...++++.+ .|..+|+--=.+|..+|+...-...+++..-. ..||. .+|..=+-+++-...|-+++|
T Consensus 116 ~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~dA 194 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDDA 194 (491)
T ss_pred cccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchhH
Confidence 3444444444444443 34555555555555566555555555555432 23333 222222222222225555555
Q ss_pred HHHHHHhhhhcCccC-CcchHHHHHHHHhhcCChHHHHHHHHhC
Q 040319 561 RKLFLSMKTIYNIEP-TSEHYASLVSVLGYWGFLEEAEETINNM 603 (812)
Q Consensus 561 ~~~~~~m~~~~~~~p-~~~~y~~li~~l~~~g~~~~A~~~~~~m 603 (812)
.+.-++..+ +.| |.-.-.+....+.-.|+..|+.+++.+-
T Consensus 195 Ek~A~ralq---iN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~t 235 (491)
T KOG2610|consen 195 EKQADRALQ---INRFDCWASHAKAHVLEMNGRHKEGKEFMYKT 235 (491)
T ss_pred HHHHHhhcc---CCCcchHHHHHHHHHHHhcchhhhHHHHHHhc
Confidence 555544433 222 1222233444455555566665555543
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=90.70 E-value=0.8 Score=31.14 Aligned_cols=36 Identities=22% Similarity=0.206 Sum_probs=29.7
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH
Q 040319 505 VSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDAITF 542 (812)
Q Consensus 505 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~ 542 (812)
..|..+...|...|++++|+++|++.++ ..||....
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~--~~P~~~~a 37 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALA--LDPDDPEA 37 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCcCCHHH
Confidence 3577888899999999999999999998 77887543
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=90.03 E-value=16 Score=36.52 Aligned_cols=153 Identities=11% Similarity=0.081 Sum_probs=95.9
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCCcchHHHHHHHHhhc
Q 040319 512 AGHLLHRQGDEALAVWSSMEKASIKPDA-ITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYW 590 (812)
Q Consensus 512 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~ 590 (812)
......|++.+|..+|+.... ..|+. ..-..+..++.. .|+++.|..++..+..+.. .........-+..+.++
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~--~~~~~~~~~~~la~~~l~--~g~~e~A~~iL~~lP~~~~-~~~~~~l~a~i~ll~qa 216 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQ--AAPENSEAKLLLAECLLA--AGDVEAAQAILAALPLQAQ-DKAAHGLQAQIELLEQA 216 (304)
T ss_pred hhhhhccchhhHHHHHHHHHH--hCcccchHHHHHHHHHHH--cCChHHHHHHHHhCcccch-hhHHHHHHHHHHHHHHH
Confidence 345667888888888888877 44544 344445556666 8888888888887754211 01111133456677777
Q ss_pred CChHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccC--CCCCchHHHHHhhhhhCCCcc-hHHHHH
Q 040319 591 GFLEEAEETINNMPFQP-KVSVWRALLDSCRIRLNTTIGKRVAKHILAME--PQDPATYILVSNLYSSSGRWH-NSELVR 666 (812)
Q Consensus 591 g~~~~A~~~~~~m~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--p~~~~~~~~l~~~y~~~g~~~-~a~~~~ 666 (812)
....+..++.++.--.| |...-..|...+...|+.+.|...+=.++..+ -+|...-..|..++...|.-+ -+.+.|
T Consensus 217 a~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~~~~R 296 (304)
T COG3118 217 AATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLVLAYR 296 (304)
T ss_pred hcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 77776666666665566 55555566667777888887766554444432 345667777777777777444 344555
Q ss_pred HHH
Q 040319 667 EDM 669 (812)
Q Consensus 667 ~~m 669 (812)
++|
T Consensus 297 RkL 299 (304)
T COG3118 297 RKL 299 (304)
T ss_pred HHH
Confidence 554
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.02 E-value=1 Score=41.46 Aligned_cols=89 Identities=9% Similarity=0.002 Sum_probs=68.4
Q ss_pred HHHhhcCChHHHHHHHHhCC-C-CC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCC
Q 040319 585 SVLGYWGFLEEAEETINNMP-F-QP-----KVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSG 657 (812)
Q Consensus 585 ~~l~~~g~~~~A~~~~~~m~-~-~p-----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g 657 (812)
+-+...|.+++|..-|.... + +| ..+.|..-..+..+.+..+.|....-+++++.|.+..+...-+.+|.+..
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKME 182 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhh
Confidence 34556778888877776643 2 22 23444444556667889999999999999999998888888999999999
Q ss_pred CcchHHHHHHHHHhCC
Q 040319 658 RWHNSELVREDMREKG 673 (812)
Q Consensus 658 ~~~~a~~~~~~m~~~g 673 (812)
++++|.+-++++.+..
T Consensus 183 k~eealeDyKki~E~d 198 (271)
T KOG4234|consen 183 KYEEALEDYKKILESD 198 (271)
T ss_pred hHHHHHHHHHHHHHhC
Confidence 9999999999987643
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=89.97 E-value=3.5 Score=41.33 Aligned_cols=159 Identities=11% Similarity=0.042 Sum_probs=100.3
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCCcchHHHH----HHHHhhcC
Q 040319 516 LHRQGDEALAVWSSMEKASIKPDAITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYASL----VSVLGYWG 591 (812)
Q Consensus 516 ~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~l----i~~l~~~g 591 (812)
-+|+..+|-..++++++. .+.|...+...-.+|.. .|..+.-...++.+.. ...|+...|+.+ .-++..+|
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy--~G~~~~~k~ai~kIip--~wn~dlp~~sYv~GmyaFgL~E~g 189 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFY--NGNQIGKKNAIEKIIP--KWNADLPCYSYVHGMYAFGLEECG 189 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHh--ccchhhhhhHHHHhcc--ccCCCCcHHHHHHHHHHhhHHHhc
Confidence 367777777788888773 44455777777778877 8887777777777764 234565555443 33445678
Q ss_pred ChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCC----CCchHHHHHhhhhhCCCcchHHHH
Q 040319 592 FLEEAEETINNMP-FQP-KVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQ----DPATYILVSNLYSSSGRWHNSELV 665 (812)
Q Consensus 592 ~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~y~~~g~~~~a~~~ 665 (812)
-+++|++.-++.. +.| |.-.-.++.......|+..+|.+.+++--..-.+ -...|-..+-.|...+.++.|.++
T Consensus 190 ~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleI 269 (491)
T KOG2610|consen 190 IYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEI 269 (491)
T ss_pred cchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHH
Confidence 8888888777754 444 4545555555666777777777776654322111 123455566667777788888888
Q ss_pred HHHHHhCCCCCCCc
Q 040319 666 REDMREKGFRKHPS 679 (812)
Q Consensus 666 ~~~m~~~g~~~~~~ 679 (812)
++.=--+.+.|+.+
T Consensus 270 yD~ei~k~l~k~Da 283 (491)
T KOG2610|consen 270 YDREIWKRLEKDDA 283 (491)
T ss_pred HHHHHHHHhhccch
Confidence 77654444555544
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.66 E-value=42 Score=38.17 Aligned_cols=75 Identities=12% Similarity=0.170 Sum_probs=48.7
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhcCCCCcchhHHHHHHHHHhhCChhHHHHHhccCCC-CCcccHHHHHHHHHh
Q 040319 237 LSVNNALIGFYTKCGRVKDVVALLERMPVMDIITLTEIIIAYMEFGYVDLAVEIFDKMPE-KNSVSYNALLAGYCK 311 (812)
Q Consensus 237 ~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~-~d~~~~~~li~~~~~ 311 (812)
..++..+|+.+.-.|++++|-...-.|...+..-|..-+.-+...++......+.-.-+. -+...|..++..+..
T Consensus 392 ~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~Ia~~lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 392 KKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDIAPYLPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred HHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchhhccCCCCCcccCchHHHHHHHHHHH
Confidence 456677788888888888888887777777777777777777776666553333222221 234456666666655
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=89.63 E-value=2.1 Score=37.75 Aligned_cols=68 Identities=15% Similarity=0.233 Sum_probs=49.8
Q ss_pred HhhhcCCHHHHHHHHccCCC--C----ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHhcC
Q 040319 482 MYFKCCNMSNAIKAFNKMPS--H----DIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDA--ITFVLIISAYRY 551 (812)
Q Consensus 482 ~y~k~g~~~~A~~~f~~~~~--~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~--~t~~~ll~a~~~ 551 (812)
...+.|++++|.+.|+.+.. | ....--.|+.+|.+.|++++|...+++.++ +.|++ +-|...+.++++
T Consensus 19 ~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFir--LhP~hp~vdYa~Y~~gL~~ 94 (142)
T PF13512_consen 19 EALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIR--LHPTHPNVDYAYYMRGLSY 94 (142)
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCCCCccHHHHHHHHHH
Confidence 34567888888888888765 1 123445578888999999999999999999 77765 556666666544
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=89.59 E-value=37 Score=37.41 Aligned_cols=180 Identities=12% Similarity=0.048 Sum_probs=117.1
Q ss_pred chhHHHHHHHHhhhcCCHHHHHHHHccCCCCC---hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCC--CCCHHHHHHHH
Q 040319 472 DLGVANSMVSMYFKCCNMSNAIKAFNKMPSHD---IVSWNGLIAGHLLHRQGDEALAVWSSMEKASI--KPDAITFVLII 546 (812)
Q Consensus 472 ~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~--~pd~~t~~~ll 546 (812)
+..+|..-++.-.+.|+.+.+.-+|+...-|= ...|--.+.-....|+.+-|..++....+--. .|....+.+.+
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 56677777777888888888888888776521 23344444333444777777776666555222 23333333333
Q ss_pred HHhcCCCCchHHHHHHHHHHhhhhcCccCC-cchHHHHHHHHhhcCChHHHH---HHHHhCC-CCCCHHHHHHHHH----
Q 040319 547 SAYRYTNLNLVDSCRKLFLSMKTIYNIEPT-SEHYASLVSVLGYWGFLEEAE---ETINNMP-FQPKVSVWRALLD---- 617 (812)
Q Consensus 547 ~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g~~~~A~---~~~~~m~-~~p~~~~~~~ll~---- 617 (812)
+-. .|+.+.|..+++.+.+++ |. ...----+...-|.|..+.+. +++.... .+-+..+...+.-
T Consensus 376 --~e~--~~n~~~A~~~lq~i~~e~---pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r 448 (577)
T KOG1258|consen 376 --EES--NGNFDDAKVILQRIESEY---PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFAR 448 (577)
T ss_pred --HHh--hccHHHHHHHHHHHHhhC---CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHH
Confidence 334 889999999999998754 55 333334456677888888887 5555432 2223223322222
Q ss_pred -HHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCC
Q 040319 618 -SCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGR 658 (812)
Q Consensus 618 -~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~ 658 (812)
.+...++.+.|..++.++.+..|++...|..++++....+-
T Consensus 449 ~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~ 490 (577)
T KOG1258|consen 449 LRYKIREDADLARIILLEANDILPDCKVLYLELIRFELIQPS 490 (577)
T ss_pred HHHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCCc
Confidence 24567899999999999999999999999999988776663
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.45 E-value=8.3 Score=36.34 Aligned_cols=175 Identities=13% Similarity=0.040 Sum_probs=92.5
Q ss_pred cCCHHHHHHHHccCCC--CC-hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcCCCCchHHHHH
Q 040319 486 CCNMSNAIKAFNKMPS--HD-IVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDA-ITFVLIISAYRYTNLNLVDSCR 561 (812)
Q Consensus 486 ~g~~~~A~~~f~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~~~g~~~~a~ 561 (812)
.|-+.-|+--|..... |+ +..||-|.--+...|+++.|.+.|+...+ +.|.. .++..-.-++-. .|+++-|.
T Consensus 78 lGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~E--LDp~y~Ya~lNRgi~~YY--~gR~~LAq 153 (297)
T COG4785 78 LGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLE--LDPTYNYAHLNRGIALYY--GGRYKLAQ 153 (297)
T ss_pred hhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhc--cCCcchHHHhccceeeee--cCchHhhH
Confidence 3444444444443322 33 35677777777778888888888888777 55543 333222223344 67777777
Q ss_pred HHHHHhhhhcCccCCcchHHHHHHHHhhcCChHHHHHHH-HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCC
Q 040319 562 KLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLEEAEETI-NNMPFQPKVSVWRALLDSCRIRLNTTIGKRVAKHILAMEP 640 (812)
Q Consensus 562 ~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~-~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p 640 (812)
+-|...-.+..-.|=...|--++ -+.=+..+|..-+ ++.. .-|.--|+..|-.+....--+ +..++++.+-..
T Consensus 154 ~d~~~fYQ~D~~DPfR~LWLYl~---E~k~dP~~A~tnL~qR~~-~~d~e~WG~~iV~~yLgkiS~--e~l~~~~~a~a~ 227 (297)
T COG4785 154 DDLLAFYQDDPNDPFRSLWLYLN---EQKLDPKQAKTNLKQRAE-KSDKEQWGWNIVEFYLGKISE--ETLMERLKADAT 227 (297)
T ss_pred HHHHHHHhcCCCChHHHHHHHHH---HhhCCHHHHHHHHHHHHH-hccHhhhhHHHHHHHHhhccH--HHHHHHHHhhcc
Confidence 66555433222222222222222 2333455555333 3322 344445655554433211111 112222222211
Q ss_pred CC-------CchHHHHHhhhhhCCCcchHHHHHHHHH
Q 040319 641 QD-------PATYILVSNLYSSSGRWHNSELVREDMR 670 (812)
Q Consensus 641 ~~-------~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 670 (812)
++ +.+|..|+.-|-..|..++|..+++...
T Consensus 228 ~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLai 264 (297)
T COG4785 228 DNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAV 264 (297)
T ss_pred chHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 11 4579999999999999999999999864
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=89.43 E-value=0.11 Score=46.74 Aligned_cols=86 Identities=12% Similarity=0.069 Sum_probs=59.0
Q ss_pred HHHHhccchhhhhHHHHHhhHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCCceeeeHHHHHHHHHcCChh
Q 040319 340 VVNACGLIMEAKLSEQIHGFVMKFGLGSNDCIEAALLDMLTRCGRMADAEKMFYRWPTDRDDSIIWTSMICGYARSGKPE 419 (812)
Q Consensus 340 ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~ 419 (812)
++..+.+.+.+.....+++.+.+.+...+..+.+.|+..|++.+..+...++++... ..-...++..+.+.|.++
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~-----~yd~~~~~~~c~~~~l~~ 87 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSN-----NYDLDKALRLCEKHGLYE 87 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSS-----SS-CTHHHHHHHTTTSHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccccc-----ccCHHHHHHHHHhcchHH
Confidence 455566666777777777777776666778888899999999888788888876433 244455666677777777
Q ss_pred hHHHHHHHhcc
Q 040319 420 HAILLFHQSQS 430 (812)
Q Consensus 420 ~A~~~~~~m~~ 430 (812)
+|.-++.++..
T Consensus 88 ~a~~Ly~~~~~ 98 (143)
T PF00637_consen 88 EAVYLYSKLGN 98 (143)
T ss_dssp HHHHHHHCCTT
T ss_pred HHHHHHHHccc
Confidence 77777766543
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=89.38 E-value=1.5 Score=43.85 Aligned_cols=108 Identities=13% Similarity=0.081 Sum_probs=54.8
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCCcchHHHHHHHHhhcC
Q 040319 513 GHLLHRQGDEALAVWSSMEKASIKP-DAITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWG 591 (812)
Q Consensus 513 ~~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g 591 (812)
-|.+.|.+++|+..|.+-+. +.| |.+++..-..||.+ ...+..|..-.+.... .-...+.+|.|.|
T Consensus 106 ~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk--~K~FA~AE~DC~~Aia---------Ld~~Y~KAYSRR~ 172 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLK--QKSFAQAEEDCEAAIA---------LDKLYVKAYSRRM 172 (536)
T ss_pred hhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHH--HHHHHHHHHhHHHHHH---------hhHHHHHHHHHHH
Confidence 45555666666666665555 555 55666555555555 4444444333332221 0112334444444
Q ss_pred ChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCCcchH
Q 040319 592 FLEEAEETINNMPFQPKVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWHNS 662 (812)
Q Consensus 592 ~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a 662 (812)
.-.+ ..|+.++|.+-++.+++++|++.. |-..|++.....|+
T Consensus 173 ~AR~-------------------------~Lg~~~EAKkD~E~vL~LEP~~~E----LkK~~a~i~Sl~E~ 214 (536)
T KOG4648|consen 173 QARE-------------------------SLGNNMEAKKDCETVLALEPKNIE----LKKSLARINSLRER 214 (536)
T ss_pred HHHH-------------------------HHhhHHHHHHhHHHHHhhCcccHH----HHHHHHHhcchHhh
Confidence 3222 335666777778888888887433 33344444444433
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=89.19 E-value=2.2 Score=41.89 Aligned_cols=93 Identities=16% Similarity=0.172 Sum_probs=57.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCC-cchHH
Q 040319 507 WNGLIAGHLLHRQGDEALAVWSSMEKASIKPDA----ITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPT-SEHYA 581 (812)
Q Consensus 507 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~----~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~ 581 (812)
|+.-+.. .+.|++.+|...|...++. -|+. ..+--|..++.. .|++++|..+|..+.++++-.|. ++.+-
T Consensus 145 Y~~A~~~-~ksgdy~~A~~~F~~fi~~--YP~s~~~~nA~yWLGe~~y~--qg~y~~Aa~~f~~~~k~~P~s~KApdall 219 (262)
T COG1729 145 YNAALDL-YKSGDYAEAEQAFQAFIKK--YPNSTYTPNAYYWLGESLYA--QGDYEDAAYIFARVVKDYPKSPKAPDALL 219 (262)
T ss_pred HHHHHHH-HHcCCHHHHHHHHHHHHHc--CCCCcccchhHHHHHHHHHh--cccchHHHHHHHHHHHhCCCCCCChHHHH
Confidence 5544433 3466688888888887773 3332 223345555555 77888888888777776665555 35666
Q ss_pred HHHHHHhhcCChHHHHHHHHhCC
Q 040319 582 SLVSVLGYWGFLEEAEETINNMP 604 (812)
Q Consensus 582 ~li~~l~~~g~~~~A~~~~~~m~ 604 (812)
-+...+.+.|+-++|-..+++..
T Consensus 220 Klg~~~~~l~~~d~A~atl~qv~ 242 (262)
T COG1729 220 KLGVSLGRLGNTDEACATLQQVI 242 (262)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHH
Confidence 66666666666666665555543
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=89.01 E-value=0.9 Score=28.66 Aligned_cols=32 Identities=19% Similarity=0.243 Sum_probs=26.5
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 040319 505 VSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPD 538 (812)
Q Consensus 505 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd 538 (812)
.+|..+...|...|++++|+..|++.++ +.|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE--LDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH--HCcC
Confidence 4688888899999999999999999988 6775
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=88.68 E-value=0.71 Score=29.10 Aligned_cols=31 Identities=10% Similarity=0.023 Sum_probs=24.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHccCCC
Q 040319 611 VWRALLDSCRIRLNTTIGKRVAKHILAMEPQ 641 (812)
Q Consensus 611 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~ 641 (812)
+|..+...+...|+.++|...++++++++|+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 4666677777888888888888888888774
|
... |
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=88.24 E-value=14 Score=33.88 Aligned_cols=53 Identities=17% Similarity=0.113 Sum_probs=27.1
Q ss_pred HHHHHHhhCChhHHHHHhccCCCCCcccHHHHHHHHHhCCChHHHHHHHHHHH
Q 040319 274 IIIAYMEFGYVDLAVEIFDKMPEKNSVSYNALLAGYCKNGKAMEALGLFVKLL 326 (812)
Q Consensus 274 li~~~~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~ 326 (812)
++..+...|++-+|++..++...-+.+....++.+-.+.++...-..+|+-..
T Consensus 95 iievLL~~g~vl~ALr~ar~~~~~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~ 147 (167)
T PF07035_consen 95 IIEVLLSKGQVLEALRYARQYHKVDSVPARKFLEAAANSNDDQLFYAVFRFFE 147 (167)
T ss_pred HHHHHHhCCCHHHHHHHHHHcCCcccCCHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34455555555555556655544444445555555555555444444444333
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=87.94 E-value=2.1 Score=36.57 Aligned_cols=85 Identities=15% Similarity=0.097 Sum_probs=43.5
Q ss_pred CchHHHHHHHHHHhhhhcCccC-CcchHHHHHHHHhhcCChHHHHHHHHhCC--CCCC----HHHHHHHHHHHHhcCCHH
Q 040319 554 LNLVDSCRKLFLSMKTIYNIEP-TSEHYASLVSVLGYWGFLEEAEETINNMP--FQPK----VSVWRALLDSCRIRLNTT 626 (812)
Q Consensus 554 ~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~li~~l~~~g~~~~A~~~~~~m~--~~p~----~~~~~~ll~~~~~~~~~~ 626 (812)
.|+++.|++.|.+... +-| ....||.-..++--+|+.++|++=+++.. ..|. -..+..-...|+..|+.+
T Consensus 56 ~g~Ld~AlE~F~qal~---l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~dd 132 (175)
T KOG4555|consen 56 AGDLDGALELFGQALC---LAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGNDD 132 (175)
T ss_pred ccchHHHHHHHHHHHH---hcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCchH
Confidence 4555555555554443 222 24455555555555555555555544432 1111 112222233467788888
Q ss_pred HHHHHHHHHHccCCC
Q 040319 627 IGKRVAKHILAMEPQ 641 (812)
Q Consensus 627 ~a~~~~~~~~~~~p~ 641 (812)
.|+.-++.+-++...
T Consensus 133 ~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 133 AARADFEAAAQLGSK 147 (175)
T ss_pred HHHHhHHHHHHhCCH
Confidence 888777777666543
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=87.89 E-value=1.2 Score=39.85 Aligned_cols=86 Identities=14% Similarity=0.152 Sum_probs=57.2
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCcchhHHHHHHHHHhhCChhH
Q 040319 207 TLLTACTGCFVLMEGRAVHAHAIRIGLGANLSVNNALIGFYTKCGRVKDVVALLERMPVMDIITLTEIIIAYMEFGYVDL 286 (812)
Q Consensus 207 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~li~~~~~~g~~~~ 286 (812)
.++..+.+.+.+.....+++.+.+.+...+..+.+.|+..|++.++.+...++++.... .....++..+.+.|.+++
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~ 88 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEE 88 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHH
Confidence 35666667777777788888888777677788889999999999888888887774433 333444555555555555
Q ss_pred HHHHhccCC
Q 040319 287 AVEIFDKMP 295 (812)
Q Consensus 287 A~~~f~~m~ 295 (812)
|.-++.++.
T Consensus 89 a~~Ly~~~~ 97 (143)
T PF00637_consen 89 AVYLYSKLG 97 (143)
T ss_dssp HHHHHHCCT
T ss_pred HHHHHHHcc
Confidence 555555443
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=87.87 E-value=25 Score=36.93 Aligned_cols=72 Identities=14% Similarity=0.047 Sum_probs=40.1
Q ss_pred HHHHHHHhcCCHHHHHHHHhcCCCCCCceeeeH-----HHHHHHHH---cCChhhHHHHHHHhcccCCCCCChhhHHHHH
Q 040319 374 ALLDMLTRCGRMADAEKMFYRWPTDRDDSIIWT-----SMICGYAR---SGKPEHAILLFHQSQSEATVVPDEIALTSVL 445 (812)
Q Consensus 374 ~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~~-----~li~~~~~---~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll 445 (812)
.|+-.|-...+++...++.+.+...+...+.-+ ...-++.+ .|+.++|++++..+.. ..-.++.-|+..+-
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~-~~~~~~~d~~gL~G 224 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLE-SDENPDPDTLGLLG 224 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHh-ccCCCChHHHHHHH
Confidence 444457777777777777777762221111111 12234445 6788888888877544 33445555555444
Q ss_pred H
Q 040319 446 G 446 (812)
Q Consensus 446 ~ 446 (812)
.
T Consensus 225 R 225 (374)
T PF13281_consen 225 R 225 (374)
T ss_pred H
Confidence 3
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=87.83 E-value=2.7 Score=41.86 Aligned_cols=76 Identities=13% Similarity=0.244 Sum_probs=61.8
Q ss_pred hhHHHHHHHHhhhcCCHHHHHHHHccCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHH-----CCCCCCHHHHHH
Q 040319 473 LGVANSMVSMYFKCCNMSNAIKAFNKMPS---HDIVSWNGLIAGHLLHRQGDEALAVWSSMEK-----ASIKPDAITFVL 544 (812)
Q Consensus 473 ~~~~~~Li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~pd~~t~~~ 544 (812)
..++..++..+..+|+.+.+...++++.. -|...|..++.+|.+.|+...|+..|+++.+ .|+.|-..+...
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 34667789999999999999999887765 5678999999999999999999999998876 577777666555
Q ss_pred HHHH
Q 040319 545 IISA 548 (812)
Q Consensus 545 ll~a 548 (812)
...+
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 5444
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=87.73 E-value=1.2 Score=28.67 Aligned_cols=27 Identities=11% Similarity=-0.013 Sum_probs=20.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHH
Q 040319 506 SWNGLIAGHLLHRQGDEALAVWSSMEK 532 (812)
Q Consensus 506 ~~~~li~~~~~~g~~~~A~~l~~~m~~ 532 (812)
+|+.|...|.+.|++++|+++|++.+.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 467788888888888888888888553
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.68 E-value=25 Score=34.42 Aligned_cols=140 Identities=14% Similarity=0.148 Sum_probs=77.5
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCCcchH
Q 040319 505 VSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDA----ITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHY 580 (812)
Q Consensus 505 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~----~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y 580 (812)
..|-.=+..-.+.|++++|.+.|+.+.. -.|.. .+-..++-|.-+ .+++++|...+++..+.++-.|+++ |
T Consensus 35 ~~LY~~g~~~L~~gn~~~A~~~fe~l~~--~~p~s~~~~qa~l~l~yA~Yk--~~~y~~A~~~~drFi~lyP~~~n~d-Y 109 (254)
T COG4105 35 SELYNEGLTELQKGNYEEAIKYFEALDS--RHPFSPYSEQAQLDLAYAYYK--NGEYDLALAYIDRFIRLYPTHPNAD-Y 109 (254)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH--cCCCCcccHHHHHHHHHHHHh--cccHHHHHHHHHHHHHhCCCCCChh-H
Confidence 3444444555677888888888888876 33432 333334444444 7778888877777776565555543 3
Q ss_pred HHHHHHHhhcCChHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCC-----------------
Q 040319 581 ASLVSVLGYWGFLEEAEETINNMP-FQPKVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQD----------------- 642 (812)
Q Consensus 581 ~~li~~l~~~g~~~~A~~~~~~m~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~----------------- 642 (812)
...+.++..-- ..+ ...|. .-...|...++.+++--|+.
T Consensus 110 ~~YlkgLs~~~----------~i~~~~rDq-------------~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~L 166 (254)
T COG4105 110 AYYLKGLSYFF----------QIDDVTRDQ-------------SAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDAL 166 (254)
T ss_pred HHHHHHHHHhc----------cCCccccCH-------------HHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHH
Confidence 33333333111 110 00010 01122333334444444432
Q ss_pred CchHHHHHhhhhhCCCcchHHHHHHHHHhC
Q 040319 643 PATYILVSNLYSSSGRWHNSELVREDMREK 672 (812)
Q Consensus 643 ~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 672 (812)
++.-...++.|.+.|.|..|..-++.|.+.
T Consensus 167 A~~Em~IaryY~kr~~~~AA~nR~~~v~e~ 196 (254)
T COG4105 167 AGHEMAIARYYLKRGAYVAAINRFEEVLEN 196 (254)
T ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHHhc
Confidence 233456788999999999999999988654
|
|
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=87.62 E-value=2 Score=30.59 Aligned_cols=34 Identities=18% Similarity=0.149 Sum_probs=26.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHH
Q 040319 615 LLDSCRIRLNTTIGKRVAKHILAMEPQDPATYIL 648 (812)
Q Consensus 615 ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 648 (812)
+.-++.+.|+.+.|.+..+.+++++|+|..+-.+
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L 40 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSL 40 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence 4457889999999999999999999997765444
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=87.33 E-value=8 Score=35.03 Aligned_cols=85 Identities=8% Similarity=-0.097 Sum_probs=41.1
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCCcchHHHHHHHHhhcCCh
Q 040319 514 HLLHRQGDEALAVWSSMEKASIKPDAITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGFL 593 (812)
Q Consensus 514 ~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~ 593 (812)
+-+.|++++|..+|+-+.. ..|...-|..-|.+|.+. .+.+++|...|..... .. .-|+..+-.+..++...|+.
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~--~d~~n~~Y~~GLaa~~Q~-~k~y~~Ai~~Y~~A~~-l~-~~dp~p~f~agqC~l~l~~~ 121 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCI--YDFYNPDYTMGLAAVCQL-KKQFQKACDLYAVAFT-LL-KNDYRPVFFTGQCQLLMRKA 121 (165)
T ss_pred HHHCCCHHHHHHHHHHHHH--hCcCcHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH-cc-cCCCCccchHHHHHHHhCCH
Confidence 3455666666666666555 444444444444443331 4556666665554332 11 11222233344555555666
Q ss_pred HHHHHHHHhC
Q 040319 594 EEAEETINNM 603 (812)
Q Consensus 594 ~~A~~~~~~m 603 (812)
+.|..-|+..
T Consensus 122 ~~A~~~f~~a 131 (165)
T PRK15331 122 AKARQCFELV 131 (165)
T ss_pred HHHHHHHHHH
Confidence 6665555543
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=87.17 E-value=0.91 Score=45.31 Aligned_cols=85 Identities=12% Similarity=-0.010 Sum_probs=70.3
Q ss_pred HHHhhcCChHHHHHHHHh-CCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCCcchH
Q 040319 585 SVLGYWGFLEEAEETINN-MPFQP-KVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWHNS 662 (812)
Q Consensus 585 ~~l~~~g~~~~A~~~~~~-m~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a 662 (812)
+-|.+.|.++||++.+.+ |...| |++++..-..+|.+.+.+..|+.-.+.++.++.....+|..-+..-...|+..||
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~EA 184 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNMEA 184 (536)
T ss_pred hhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHH
Confidence 456788999999999887 55777 8888888889999999999999999999999887777888877777888888888
Q ss_pred HHHHHHH
Q 040319 663 ELVREDM 669 (812)
Q Consensus 663 ~~~~~~m 669 (812)
.+-.+..
T Consensus 185 KkD~E~v 191 (536)
T KOG4648|consen 185 KKDCETV 191 (536)
T ss_pred HHhHHHH
Confidence 7655443
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=86.13 E-value=16 Score=33.05 Aligned_cols=85 Identities=19% Similarity=0.178 Sum_probs=48.1
Q ss_pred CchHHHHHHHHHHhhhhcCccCC-cchHHHHHHHHhhcCChHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 040319 554 LNLVDSCRKLFLSMKTIYNIEPT-SEHYASLVSVLGYWGFLEEAEETINNMP-FQPKVSVWRALLDSCRIRLNTTIGKRV 631 (812)
Q Consensus 554 ~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p~~~~~~~ll~~~~~~~~~~~a~~~ 631 (812)
.++.+++..++..+.- +.|. .++-..-+-.+.+.|++.+|+.+++++. -.|....-.+|+..|.....-..=...
T Consensus 23 ~~~~~D~e~lL~ALrv---LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~Wr~~ 99 (160)
T PF09613_consen 23 LGDPDDAEALLDALRV---LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPSWRRY 99 (160)
T ss_pred cCChHHHHHHHHHHHH---hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChHHHHH
Confidence 4566666666666654 4454 2222333445567777777777777765 344555556677766654333333444
Q ss_pred HHHHHccCCC
Q 040319 632 AKHILAMEPQ 641 (812)
Q Consensus 632 ~~~~~~~~p~ 641 (812)
++++++-.|+
T Consensus 100 A~evle~~~d 109 (160)
T PF09613_consen 100 ADEVLESGAD 109 (160)
T ss_pred HHHHHhcCCC
Confidence 5566666553
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=85.67 E-value=1.3 Score=28.53 Aligned_cols=25 Identities=12% Similarity=-0.059 Sum_probs=12.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 040319 612 WRALLDSCRIRLNTTIGKRVAKHIL 636 (812)
Q Consensus 612 ~~~ll~~~~~~~~~~~a~~~~~~~~ 636 (812)
|..|...|...|+.++|+.++++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444455555555555555555533
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=85.40 E-value=7.9 Score=35.10 Aligned_cols=57 Identities=16% Similarity=0.188 Sum_probs=37.9
Q ss_pred HHhhCChhHHHHHhccCCCCCcccHHHHH-----HHHHhCCChHHHHHHHHHHHHcCCCCCH
Q 040319 278 YMEFGYVDLAVEIFDKMPEKNSVSYNALL-----AGYCKNGKAMEALGLFVKLLEEGLVLTE 334 (812)
Q Consensus 278 ~~~~g~~~~A~~~f~~m~~~d~~~~~~li-----~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 334 (812)
+.+.+..++|+.-|..+.+.+--+|-.|. ....+.|+...|...|.+.-.....|-.
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~ 129 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQI 129 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcch
Confidence 34556667777777777776666665543 3456778888888888887765544543
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=85.15 E-value=12 Score=38.18 Aligned_cols=129 Identities=16% Similarity=0.083 Sum_probs=82.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCC-C----HHHHHHHHHHhcCCCCchHHHHHHHHHHhh---hhcCccCCcchH
Q 040319 509 GLIAGHLLHRQGDEALAVWSSMEKASIKP-D----AITFVLIISAYRYTNLNLVDSCRKLFLSMK---TIYNIEPTSEHY 580 (812)
Q Consensus 509 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d----~~t~~~ll~a~~~~~~g~~~~a~~~~~~m~---~~~~~~p~~~~y 580 (812)
+|..++.-.+.++++++.|+...+---.. | -..+..|-+-|.. ..++++|.-+..... ..+++.....-|
T Consensus 127 ~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~--l~D~~Kal~f~~kA~~lv~s~~l~d~~~ky 204 (518)
T KOG1941|consen 127 SMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQ--LKDYEKALFFPCKAAELVNSYGLKDWSLKY 204 (518)
T ss_pred hHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHH--HHhhhHHhhhhHhHHHHHHhcCcCchhHHH
Confidence 35566666777888888888876521111 1 2456777777777 778888776654332 224444333344
Q ss_pred HHH-----HHHHhhcCChHHHHHHHHhCC-------CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccC
Q 040319 581 ASL-----VSVLGYWGFLEEAEETINNMP-------FQP-KVSVWRALLDSCRIRLNTTIGKRVAKHILAME 639 (812)
Q Consensus 581 ~~l-----i~~l~~~g~~~~A~~~~~~m~-------~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 639 (812)
.+| .-+|-..|++-+|.+.-++.. -.| -+.....+.+.|+..|+.|.|..-+|++....
T Consensus 205 r~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m 276 (518)
T KOG1941|consen 205 RAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTM 276 (518)
T ss_pred HHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHH
Confidence 443 455667777777777666532 222 34566677888999999999999888887643
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=85.06 E-value=1.9 Score=27.00 Aligned_cols=31 Identities=16% Similarity=0.268 Sum_probs=24.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 040319 506 SWNGLIAGHLLHRQGDEALAVWSSMEKASIKPD 538 (812)
Q Consensus 506 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd 538 (812)
.|..+...|...|++++|++.|++.++ +.|+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~--l~p~ 33 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE--LDPN 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH--HCcC
Confidence 567778888889999999999998888 6665
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=85.03 E-value=2.7 Score=37.76 Aligned_cols=54 Identities=11% Similarity=0.189 Sum_probs=39.3
Q ss_pred HhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCCcchHHHHHHHHHhCC
Q 040319 620 RIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWHNSELVREDMREKG 673 (812)
Q Consensus 620 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g 673 (812)
..+++.+.++.++.-+.-+.|..+..-..-++++...|+|++|.++++.+.+.+
T Consensus 21 l~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~ 74 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERA 74 (160)
T ss_pred HccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccC
Confidence 345677777777777777777777777777777777777777777777765543
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=84.23 E-value=66 Score=34.77 Aligned_cols=40 Identities=20% Similarity=0.198 Sum_probs=19.4
Q ss_pred hhhhHHHHHHHhhcCCCCCCcEEEEccccccc--chhhHHHHh
Q 040319 742 FYHSAKLAATYGLLTTPAGQPVRIVKNILTCG--DCHSFLKYV 782 (812)
Q Consensus 742 ~~hse~la~~~~~~~~~~~~~~~~~~n~~~c~--~ch~~~k~~ 782 (812)
+-|-|+||.-|+.-..- -..|.|..|.---. |-|+..|-+
T Consensus 429 ~sl~ekl~~kfk~sknf-~kr~kI~~~y~~vr~~Dlhse~em~ 470 (711)
T COG1747 429 VSLEEKLAVKFKASKNF-FKRIKILNTYMFVRDTDLHSELEMF 470 (711)
T ss_pred cChHHHHHHHhhcchhh-HHHHHHHHHHHhhhcccchhHHHHH
Confidence 45778888877653221 12233333322222 666655544
|
|
| >PF13929 mRNA_stabil: mRNA stabilisation | Back alignment and domain information |
|---|
Probab=83.84 E-value=37 Score=33.95 Aligned_cols=112 Identities=14% Similarity=0.086 Sum_probs=59.3
Q ss_pred CHHHHHHHHhcCCC-----CCcchHHHHHHHHHc-CC-ChhHHHHHHHHhHhcCCCCCCcchHHHHHHHHhcCCChHHHH
Q 040319 150 CLDYLLKLFDELPH-----KDTVSWNTVISSVVN-EF-EYEKAFELFRDMKRDNGFTVDYFTISTLLTACTGCFVLMEGR 222 (812)
Q Consensus 150 ~~~~a~~~f~~~~~-----~~~~~~~~li~~~~~-~g-~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~~~~~~a~ 222 (812)
.+-+|.++|+.... .|...-..+++.... .+ ....--++.+-+....+-.++..+...+|..++..+++..-.
T Consensus 143 ~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~ 222 (292)
T PF13929_consen 143 IVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLF 222 (292)
T ss_pred HHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHH
Confidence 45566666663221 244444444444443 11 122222333333233345566666666666666666666666
Q ss_pred HHHHHHHHh-CCCCchhHHHHHHHHHHhcCChHHHHHHHh
Q 040319 223 AVHAHAIRI-GLGANLSVNNALIGFYTKCGRVKDVVALLE 261 (812)
Q Consensus 223 ~~~~~~~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~l~~ 261 (812)
+++...... +...|...|..+|....+.|+..-...+.+
T Consensus 223 ~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 223 QFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred HHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 666665554 455566666666666666666666555443
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=83.75 E-value=53 Score=33.32 Aligned_cols=62 Identities=6% Similarity=0.038 Sum_probs=31.6
Q ss_pred HHHHHhhhcCCHHHHHHHHccCCC-C--ChhHHHHHHHHHHh--cCChHHHHHHHHHHHHCCCCCCH
Q 040319 478 SMVSMYFKCCNMSNAIKAFNKMPS-H--DIVSWNGLIAGHLL--HRQGDEALAVWSSMEKASIKPDA 539 (812)
Q Consensus 478 ~Li~~y~k~g~~~~A~~~f~~~~~-~--~~~~~~~li~~~~~--~g~~~~A~~l~~~m~~~g~~pd~ 539 (812)
.-++...+.++.+.+.+++.+|.. . ....+..++..+.. ......|...+++++...+.|..
T Consensus 126 L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 126 LKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHHIKQLAEKSPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred HHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHhCCCh
Confidence 334444456666666666665543 1 22444444444421 22345666666666655555554
|
It is also involved in sporulation []. |
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=83.68 E-value=36 Score=33.91 Aligned_cols=55 Identities=9% Similarity=-0.015 Sum_probs=49.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCCcchHHHHHHHHHh
Q 040319 617 DSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWHNSELVREDMRE 671 (812)
Q Consensus 617 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 671 (812)
..|...|.+..|.+..++++.++|-+...+..|.++|+..|+--.|.+-+++|.+
T Consensus 287 ~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 287 RAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 4688899999999999999999999999999999999999998888887777743
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=83.28 E-value=3.4 Score=36.50 Aligned_cols=53 Identities=6% Similarity=0.102 Sum_probs=45.7
Q ss_pred hcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCCcchHHHHHHHHHhCC
Q 040319 621 IRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWHNSELVREDMREKG 673 (812)
Q Consensus 621 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g 673 (812)
..++.+.++.+.+.+--+.|+.+..-..-++++...|+|+||.++++...+.+
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 37888888888888888899999999999999999999999999998876554
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=83.07 E-value=7.1 Score=38.90 Aligned_cols=97 Identities=14% Similarity=0.204 Sum_probs=70.6
Q ss_pred hCCCCchhHHHHHHHHhhhcCCHHHHHHHHccCCC-------C--ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 040319 467 TGFSSDLGVANSMVSMYFKCCNMSNAIKAFNKMPS-------H--DIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKP 537 (812)
Q Consensus 467 ~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~-------~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 537 (812)
.|......+...+++.-....+++++...+-++.. | ..++|-.++. .-++++++.++..=++-|+.|
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlll----ky~pq~~i~~l~npIqYGiF~ 133 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLL----KYDPQKAIYTLVNPIQYGIFP 133 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHH----ccChHHHHHHHhCcchhcccc
Confidence 34455555566677777777888888877766543 2 2334444433 347789999999999999999
Q ss_pred CHHHHHHHHHHhcCCCCchHHHHHHHHHHhhh
Q 040319 538 DAITFVLIISAYRYTNLNLVDSCRKLFLSMKT 569 (812)
Q Consensus 538 d~~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~ 569 (812)
|..|++.+++.+.+ .+++.+|..+...|..
T Consensus 134 dqf~~c~l~D~flk--~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 134 DQFTFCLLMDSFLK--KENYKDAASVVTEVMM 163 (418)
T ss_pred chhhHHHHHHHHHh--cccHHHHHHHHHHHHH
Confidence 99999999999998 8999888887665543
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.83 E-value=50 Score=32.38 Aligned_cols=179 Identities=14% Similarity=0.104 Sum_probs=105.7
Q ss_pred CchhHHHHHHHHhhhcCCHHHHHHHHccCCCCC------hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH--HHH
Q 040319 471 SDLGVANSMVSMYFKCCNMSNAIKAFNKMPSHD------IVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDA--ITF 542 (812)
Q Consensus 471 ~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~--~t~ 542 (812)
|-...|+--+ .-.+.|++++|.+.|+.+.... ..+--.++-++.+.+++++|+..+++.++ ..|++ +-|
T Consensus 33 p~~~LY~~g~-~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~--lyP~~~n~dY 109 (254)
T COG4105 33 PASELYNEGL-TELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIR--LYPTHPNADY 109 (254)
T ss_pred CHHHHHHHHH-HHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCCCCChhH
Confidence 3334444433 3456799999999999997622 23344456677889999999999999988 44543 344
Q ss_pred HHHHHHhcC---C--CCchH---HHHHHHHHHhhhhcCccCCcchHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHH--
Q 040319 543 VLIISAYRY---T--NLNLV---DSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLEEAEETINNMPFQPKVSVW-- 612 (812)
Q Consensus 543 ~~ll~a~~~---~--~~g~~---~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~~~p~~~~~-- 612 (812)
..-|.+.+. . ...+. .+|..-|+....++ |+ +.-..+|..-+.... |....
T Consensus 110 ~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ry---Pn-------------S~Ya~dA~~~i~~~~---d~LA~~E 170 (254)
T COG4105 110 AYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRY---PN-------------SRYAPDAKARIVKLN---DALAGHE 170 (254)
T ss_pred HHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHC---CC-------------CcchhhHHHHHHHHH---HHHHHHH
Confidence 444443332 1 01122 23333333333322 22 111222222221110 11001
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHccCCCCC---chHHHHHhhhhhCCCcchHHHHHHHHHh
Q 040319 613 RALLDSCRIRLNTTIGKRVAKHILAMEPQDP---ATYILVSNLYSSSGRWHNSELVREDMRE 671 (812)
Q Consensus 613 ~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 671 (812)
.++..-|.++|...-|..-++.+++--|+.+ ..+..|..+|.+.|-.++|.+..+-+..
T Consensus 171 m~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 171 MAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 1234457788888888888888888766544 3456677889999999999998887754
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=82.58 E-value=68 Score=33.71 Aligned_cols=141 Identities=11% Similarity=0.002 Sum_probs=79.9
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-----CCCH-HHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccC
Q 040319 502 HDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASI-----KPDA-ITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEP 575 (812)
Q Consensus 502 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-----~pd~-~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p 575 (812)
....+|..++..+.+.|+++.|...+.++...+. .|.. ..+.-++-+ .|+-.+|...++...+. .+..
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~-----~g~~~~Ai~~L~~~~~~-~~~~ 217 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWA-----QGEQEEAIQKLRELLKC-RLSK 217 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHH-----cCCHHHHHHHHHHHHHH-Hhhh
Confidence 4556888999999999999999999999887431 3333 334444433 67788888888777651 1111
Q ss_pred C--cchHHHHHHHHhhcCChHHHHHHHHhC--C-CCC--CHHHHHHHHHHHHhc------CCHHHHHHHHHHHHccCCCC
Q 040319 576 T--SEHYASLVSVLGYWGFLEEAEETINNM--P-FQP--KVSVWRALLDSCRIR------LNTTIGKRVAKHILAMEPQD 642 (812)
Q Consensus 576 ~--~~~y~~li~~l~~~g~~~~A~~~~~~m--~-~~p--~~~~~~~ll~~~~~~------~~~~~a~~~~~~~~~~~p~~ 642 (812)
. ......+...+.. ..+....- . ..+ -..++..+..-+... ++.+.+...++.+.++.|+.
T Consensus 218 ~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 291 (352)
T PF02259_consen 218 NIDSISNAELKSGLLE------SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSW 291 (352)
T ss_pred ccccccHHHHhhcccc------ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhH
Confidence 1 1111111111000 00000000 0 000 012222233333333 78888999999999999988
Q ss_pred CchHHHHHhhhh
Q 040319 643 PATYILVSNLYS 654 (812)
Q Consensus 643 ~~~~~~l~~~y~ 654 (812)
...+..++..+.
T Consensus 292 ~k~~~~~a~~~~ 303 (352)
T PF02259_consen 292 EKAWHSWALFND 303 (352)
T ss_pred HHHHHHHHHHHH
Confidence 888887776654
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=82.47 E-value=39 Score=31.63 Aligned_cols=113 Identities=12% Similarity=0.026 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHH--HHhcCCCCchHHHHHHHHHHhhhhcCccCCcchHHHH-----HHHHhhcCChH
Q 040319 522 EALAVWSSMEKASIKPDAITFVLII--SAYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYASL-----VSVLGYWGFLE 594 (812)
Q Consensus 522 ~A~~l~~~m~~~g~~pd~~t~~~ll--~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~l-----i~~l~~~g~~~ 594 (812)
+.....+++....-+...-++.+|- .++.. .|++++|...++.... .|.-+.+..+ ...+...|.++
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve--~~~~d~A~aqL~~~l~----~t~De~lk~l~~lRLArvq~q~~k~D 143 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVE--ANNLDKAEAQLKQALA----QTKDENLKALAALRLARVQLQQKKAD 143 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHh--hccHHHHHHHHHHHHc----cchhHHHHHHHHHHHHHHHHHhhhHH
Confidence 4445555555432122222222222 24455 7888888888876654 2444444443 45677889999
Q ss_pred HHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCC
Q 040319 595 EAEETINNMPFQPK--VSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQ 641 (812)
Q Consensus 595 ~A~~~~~~m~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~ 641 (812)
+|+..++... .++ +.....-...+...|+-+.|+..++++++.+++
T Consensus 144 ~AL~~L~t~~-~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s 191 (207)
T COG2976 144 AALKTLDTIK-EESWAAIVAELRGDILLAKGDKQEARAAYEKALESDAS 191 (207)
T ss_pred HHHHHHhccc-cccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCC
Confidence 9999988754 221 122222334677889999999999999988765
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=81.66 E-value=5.7 Score=39.66 Aligned_cols=61 Identities=11% Similarity=0.191 Sum_probs=42.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCCcchHHHHHHHHHh
Q 040319 611 VWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWHNSELVREDMRE 671 (812)
Q Consensus 611 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 671 (812)
+...++.++...|+.+.+...++++++++|-+...|..+...|.+.|+...|+..++.+.+
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 3444555566666777777777777777777777777777777777777777777777654
|
|
| >TIGR02508 type_III_yscG type III secretion protein, YscG family | Back alignment and domain information |
|---|
Probab=81.30 E-value=22 Score=29.01 Aligned_cols=82 Identities=17% Similarity=0.166 Sum_probs=54.6
Q ss_pred HHHHHHHHhcCChHHHHHHHhcCCCCcchhHHHHHHHHHhhCChhHHHHHhccCCCCCcccHHHHHHHHHhCCChHHHHH
Q 040319 241 NALIGFYTKCGRVKDVVALLERMPVMDIITLTEIIIAYMEFGYVDLAVEIFDKMPEKNSVSYNALLAGYCKNGKAMEALG 320 (812)
Q Consensus 241 ~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~ 320 (812)
|++.+.+...++.+++..+. -+..+...|++++|..+.+.+.-||...|-+|-. .+.|..+++..
T Consensus 25 ~tIAdwL~~~~~~~E~v~lI-------------RlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~ 89 (115)
T TIGR02508 25 NTIADWLHLKGESEEAVQLI-------------RLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALES 89 (115)
T ss_pred HHHHHHHhcCCchHHHHHHH-------------HHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHH
Confidence 44455555555555555422 2346777888888888999999999999988765 35677777777
Q ss_pred HHHHHHHcCCCCCHhHHH
Q 040319 321 LFVKLLEEGLVLTEFTLT 338 (812)
Q Consensus 321 l~~~m~~~g~~p~~~t~~ 338 (812)
-+.+|-.+| .|...+|.
T Consensus 90 rl~rla~sg-~p~lq~Fa 106 (115)
T TIGR02508 90 RLNRLAASG-DPRLQTFV 106 (115)
T ss_pred HHHHHHhCC-CHHHHHHH
Confidence 777776665 44444444
|
YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc. |
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=81.05 E-value=67 Score=32.59 Aligned_cols=97 Identities=13% Similarity=0.029 Sum_probs=45.1
Q ss_pred hHHHHHHHHHHhcCChHHHH---HHHhcCC--CCc-chhHHHHHHHHHhhCChhHHHHHhccCCCC---CcccHHHHHHH
Q 040319 238 SVNNALIGFYTKCGRVKDVV---ALLERMP--VMD-IITLTEIIIAYMEFGYVDLAVEIFDKMPEK---NSVSYNALLAG 308 (812)
Q Consensus 238 ~~~~~li~~~~~~g~~~~A~---~l~~~~~--~~~-~~~~~~li~~~~~~g~~~~A~~~f~~m~~~---d~~~~~~li~~ 308 (812)
.+...|+.+|...+..+... ++++.+. -++ +..+-.-+..+.+.++.+++.+++.+|... ....+...+..
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~ 164 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHH 164 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHH
Confidence 34555666666666544333 3333331 112 233333444444455566666666665431 22345555444
Q ss_pred HHh--CCChHHHHHHHHHHHHcCCCCCH
Q 040319 309 YCK--NGKAMEALGLFVKLLEEGLVLTE 334 (812)
Q Consensus 309 ~~~--~g~~~~A~~l~~~m~~~g~~p~~ 334 (812)
+.+ ......|...+..++...+.|..
T Consensus 165 i~~l~~~~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 165 IKQLAEKSPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred HHHHHhhCcHHHHHHHHHHHHHHhCCCh
Confidence 421 12334555555555554444444
|
It is also involved in sporulation []. |
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=81.03 E-value=1.3 Score=26.09 Aligned_cols=24 Identities=8% Similarity=0.087 Sum_probs=19.3
Q ss_pred chHHHHHhhhhhCCCcchHHHHHH
Q 040319 644 ATYILVSNLYSSSGRWHNSELVRE 667 (812)
Q Consensus 644 ~~~~~l~~~y~~~g~~~~a~~~~~ 667 (812)
.....|+.+|...|++++|..+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 356778889999999999988764
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=80.92 E-value=9.5 Score=35.96 Aligned_cols=101 Identities=18% Similarity=0.132 Sum_probs=70.1
Q ss_pred CchHHHHHHHHHHhhhhcCccCC-cchHHHHHHHHhhcCChHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcCCHHHHHH
Q 040319 554 LNLVDSCRKLFLSMKTIYNIEPT-SEHYASLVSVLGYWGFLEEAEETINNMP-FQPK-VSVWRALLDSCRIRLNTTIGKR 630 (812)
Q Consensus 554 ~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p~-~~~~~~ll~~~~~~~~~~~a~~ 630 (812)
.|...-|+-=|.+... +.|+ +..||-+.--|..+|+++.|.+.|+..- +.|. ..+...-.-+..--|+.+.|.+
T Consensus 78 lGL~~LAR~DftQaLa---i~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~ 154 (297)
T COG4785 78 LGLRALARNDFSQALA---IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQD 154 (297)
T ss_pred hhHHHHHhhhhhhhhh---cCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHH
Confidence 6667777766766654 6777 6788888888899999999999998854 5663 3333222223445688999999
Q ss_pred HHHHHHccCCCCCchHHHHHhhhhhCCCcc
Q 040319 631 VAKHILAMEPQDPATYILVSNLYSSSGRWH 660 (812)
Q Consensus 631 ~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~ 660 (812)
-+-+..+-+|+||- .-.|+|...-+.+
T Consensus 155 d~~~fYQ~D~~DPf---R~LWLYl~E~k~d 181 (297)
T COG4785 155 DLLAFYQDDPNDPF---RSLWLYLNEQKLD 181 (297)
T ss_pred HHHHHHhcCCCChH---HHHHHHHHHhhCC
Confidence 88888899998763 2335555544443
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=80.86 E-value=1.2e+02 Score=35.21 Aligned_cols=117 Identities=12% Similarity=0.042 Sum_probs=54.0
Q ss_pred HHHHHHHccCChhhHHHHHhcCCCCChhhHHHH---HHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC
Q 040319 38 PLISAYLKLGHVADAYKIFYGLSSPNVVSFTSL---ISGLAKLGREEEAIELFFRMRSEGIVPNEHSFVAILTACIRLLE 114 (812)
Q Consensus 38 ~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~l---i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 114 (812)
.-|++..+...++.|..+-..-..+....-+.+ .+-+.+.|++++|...|-+-... +.| ..+++-+.....
T Consensus 339 ~kL~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLdaq~ 412 (933)
T KOG2114|consen 339 TKLDILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLDAQR 412 (933)
T ss_pred HHHHHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcCHHH
Confidence 345555555566666666554332222211211 22334566777776665543321 111 223344433333
Q ss_pred hHHHHHHHHHHHHhCCCCchHHHHHHHHHhhhcCCCHHHHHHHHhcCC
Q 040319 115 LELGFQIHALIVKMGCVDSVFVTNALMGLYGKFSFCLDYLLKLFDELP 162 (812)
Q Consensus 115 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~~a~~~f~~~~ 162 (812)
+..--..++.+.+.|+.. ...-+.|+..|.+.+ +.+...+..+..+
T Consensus 413 IknLt~YLe~L~~~gla~-~dhttlLLncYiKlk-d~~kL~efI~~~~ 458 (933)
T KOG2114|consen 413 IKNLTSYLEALHKKGLAN-SDHTTLLLNCYIKLK-DVEKLTEFISKCD 458 (933)
T ss_pred HHHHHHHHHHHHHccccc-chhHHHHHHHHHHhc-chHHHHHHHhcCC
Confidence 444444455555555432 222345556666666 5555555544443
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 60.6 bits (146), Expect = 1e-09
Identities = 90/632 (14%), Positives = 170/632 (26%), Gaps = 184/632 (29%)
Query: 24 LIKLLLEQDTR-----FGNPLISAYLKLGHVADAYKIFYGLSSPNVVSFTSLISGL---- 74
L LL + L Y + K S + L
Sbjct: 67 LFWTLLSKQEEMVQKFVEEVLRINY---KFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDN 123
Query: 75 ---AKLG--REEEAIEL---FFRMRSEGIVPNEH-------SFVAILTACIRLLELELGF 119
AK R + ++L +R V ++VA+ ++ ++ F
Sbjct: 124 QVFAKYNVSRLQPYLKLRQALLELRPAKNV-LIDGVLGSGKTWVALDVCLSYKVQCKMDF 182
Query: 120 QIHALIVKMGCVDSV-FVTNALMGLYGKFSFCLDYLLKLFDELPHKDTVSWNTVISSVVN 178
+I L + +S V L L + + S + ++
Sbjct: 183 KIFWL--NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKL-RIHSIQAELRRLLK 239
Query: 179 EFEYEKAFELFRDMKRDNGFTVDYFTISTLLTACTGCFVLMEGRAVHAHAIRIGLGANLS 238
YE + +++ N + F + C +L+ R
Sbjct: 240 SKPYENCLLVLLNVQ--NAKAWNAFNL--------SCKILLTTR-------------FKQ 276
Query: 239 VNNALIGFYTKCGRVKDVVALLERMPVMDIITLTEIIIAYMEFGYVDLAVEIFDKMPEKN 298
V + L T + L V +++ Y++ DL E+ P
Sbjct: 277 VTDFLSAATTTHISLDHHSMTLTPDEVK------SLLLKYLDCRPQDLPREVLTTNP--- 327
Query: 299 SVSYNALLAGYCKNGKAMEALGLFVKLLEEGLVLTEFTLTSVVNACGLIMEAKL-----S 353
L + + + +GL + + I+E+ L +
Sbjct: 328 -------RR-----------LSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPA 369
Query: 354 EQIHGFVMKFGLGSNDC-IEAALLDMLTRCGRMADAEKMFYRW--PTDRDDSIIWT---- 406
E F + + I LL ++ W D ++
Sbjct: 370 EYRKMF-DRLSVFPPSAHIPTILLSLI---------------WFDVIKSDVMVVVNKLHK 413
Query: 407 -SMICGYARSGKPE----HAILLFHQSQSEATVVPDEIALTSVLGVCGTLGFHEMGKQIH 461
S++ + K +I L + + E +E AL H +
Sbjct: 414 YSLV---EKQPKESTISIPSIYLELKVKLE-----NEYAL------------HR--SIVD 451
Query: 462 SYALKTGFSSDLGVANSMVSMYFKCCNMSNAIKAFNKMPSHDIVSWNGLIAGHLLHRQGD 521
Y + F SD + + YF + SH I HL + +
Sbjct: 452 HYNIPKTFDSD-DLIPPYLDQYF-----------Y----SH--------IGHHLKNIEHP 487
Query: 522 EALAVWSSME------KASIKPDAITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYN--I 573
E + ++ + + I+ D+ T N S +K Y I
Sbjct: 488 ERMTLFRMVFLDFRFLEQKIRHDS------------TAWNASGSILNTLQQLK-FYKPYI 534
Query: 574 EPTSEHYASLVSVLGYWGFLEEAEETINNMPF 605
Y LV+ + FL + EE + +
Sbjct: 535 CDNDPKYERLVNAILD--FLPKIEENLICSKY 564
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 60.6 bits (145), Expect = 2e-09
Identities = 13/82 (15%), Positives = 30/82 (36%), Gaps = 7/82 (8%)
Query: 37 NPLISAYLKLGHVADAYKIFYGLSS-------PNVVSFTSLISGLAKLGREEEAIELFFR 89
L + A+ + + + +++ G A+ G +E + + F
Sbjct: 131 LAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFM 190
Query: 90 MRSEGIVPNEHSFVAILTACIR 111
++ G+ P+ S+ A L R
Sbjct: 191 VKDAGLTPDLLSYAAALQCMGR 212
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 52.9 bits (125), Expect = 4e-07
Identities = 15/129 (11%), Positives = 36/129 (27%), Gaps = 11/129 (8%)
Query: 202 YFTISTLLTACTGCFVLMEGRAVHAHAIRIGLGANLSVNNALIGFYTKCGRVKDVVALLE 261
++ LL G L +A + L A ++ LL
Sbjct: 92 EEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLV 151
Query: 262 RM-------PVMDIITLTEIIIAYMEFGYVDLAVEIFDKMPEK----NSVSYNALLAGYC 310
++ + +++ + G V + + + + +SY A L
Sbjct: 152 VHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMG 211
Query: 311 KNGKAMEAL 319
+ + +
Sbjct: 212 RQDQDAGTI 220
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 50.2 bits (118), Expect = 3e-06
Identities = 14/130 (10%), Positives = 34/130 (26%), Gaps = 7/130 (5%)
Query: 427 QSQSEATVVPDEIALTSVLGVCGTLGFHEMGKQIHSYALKTGFSSDLGVANSMVSMYFKC 486
+A P E L +L ++ + + S +
Sbjct: 81 DCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLT 140
Query: 487 CNMSNAIKAFNKMPSH-------DIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDA 539
+ A + +N ++ G E + V ++ A + PD
Sbjct: 141 DQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDL 200
Query: 540 ITFVLIISAY 549
+++ +
Sbjct: 201 LSYAAALQCM 210
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 47.1 bits (110), Expect = 3e-05
Identities = 38/337 (11%), Positives = 87/337 (25%), Gaps = 68/337 (20%)
Query: 267 DIITLTEIIIAYMEFGYVDLAVEIFDKMPEKNS-------VSYNALLAGYCKNGKAMEAL 319
L + + LA + + YNA++ G+ + G E +
Sbjct: 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELV 185
Query: 320 GLFVKLLEEGLVLTEFTLTSVVNACGLIMEAKLSEQIHGFVMKFGLGSNDCIEAALLDML 379
+ + + GL + AA L +
Sbjct: 186 YVLFMVKDAGLTPDLLSY-----------------------------------AAALQCM 210
Query: 380 TRCGRMA-DAEKMFYRWPTDRDDS--IIWTSMICGYARSGKPEHAILLFHQSQSEATVVP 436
R + A E+ + + + ++ R+ A+ + S +P
Sbjct: 211 GRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRAT-VLKAVHKVKPTFSLPPQLP 269
Query: 437 DEIALTSVLGVCGTLGFHEMGKQIHSYALKTGFSSDLGV-----ANSMVSMYFKCCNMSN 491
+ + +L ++H + + + V K S
Sbjct: 270 PPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQCLFEKQLHMELASRVCVVSVEKPTLPSK 329
Query: 492 AIKAFNKMPSHDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDAITFVLIISAYRY 551
+K K W + L + + +E+ + Y
Sbjct: 330 EVKHARKTLKTLRDQWEKALCRALRETK--------NRLEREVYEGR---------FSLY 372
Query: 552 TNLNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLG 588
L L+D + + ++ + + E + +L L
Sbjct: 373 PFLCLLDEREVVRMLLQVLQALPAQGESFTTLARELS 409
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 44.4 bits (103), Expect = 2e-04
Identities = 15/153 (9%), Positives = 35/153 (22%), Gaps = 30/153 (19%)
Query: 60 SSPNVVSFTSLISGLAKLGREEEAIELFFRMRSEGIVPNEHSFVAILTACIRLLELELGF 119
SP L+ + + + + +A C+ +L L
Sbjct: 88 ESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAH 147
Query: 120 QIHALIVKMGCVDSVFVTNALMGLYGKFSFCLDYLLKLFDELPHKDTVSWNTVISSVVNE 179
+ L + +N V+ +
Sbjct: 148 HL-----------------------------LVVHHGQRQKRKLLTLDMYNAVMLGWARQ 178
Query: 180 FEYEKAFELFRDMKRDNGFTVDYFTISTLLTAC 212
+++ + +K G T D + + L
Sbjct: 179 GAFKELVYVLFMVKDA-GLTPDLLSYAAALQCM 210
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 812 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.94 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.93 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.93 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.93 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.89 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.87 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.87 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.84 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.84 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.83 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.82 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.81 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.77 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.76 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.76 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.75 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.73 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.69 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.68 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.68 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.68 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.65 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.64 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.64 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.63 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.63 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.63 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.62 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.61 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.61 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.59 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.57 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.56 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.56 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.53 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.52 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.46 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.45 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.44 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.41 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.4 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.36 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.36 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.34 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.33 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.33 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.33 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.33 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.31 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.31 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.3 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.29 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.29 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.28 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.27 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.27 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.27 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.27 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.25 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.23 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.21 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.17 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.17 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.16 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.15 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.15 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.12 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.12 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.11 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.09 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.09 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.08 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.08 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.07 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.06 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.05 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.05 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 98.97 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 98.96 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 98.93 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 98.91 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.88 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 98.87 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.86 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 98.85 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.82 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.79 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.78 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.77 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 98.73 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 98.71 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 98.71 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.71 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.71 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.71 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.7 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.69 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.68 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.64 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.63 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.62 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.61 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.61 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.59 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.59 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.54 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.54 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.52 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.49 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.49 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.47 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.46 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.45 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.45 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.44 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.44 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.44 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.43 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.39 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.38 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.37 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.34 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.31 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.3 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.3 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.28 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.28 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.28 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.28 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.28 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.27 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.26 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.25 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.24 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.22 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.19 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.19 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.18 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.17 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.17 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.17 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.16 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.15 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.15 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.14 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.14 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.12 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.08 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.07 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.07 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.06 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.05 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.03 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.03 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.02 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.02 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.99 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 97.99 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.97 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 97.96 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 97.95 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 97.93 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 97.93 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 97.93 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.92 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 97.91 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.9 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.88 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 97.88 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 97.88 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 97.87 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 97.86 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 97.83 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 97.8 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.77 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 97.77 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.77 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 97.76 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 97.73 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.69 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.67 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 97.66 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 97.65 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.63 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.61 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 97.6 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.59 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.59 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 97.59 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.57 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.55 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.53 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.49 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 97.49 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.46 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.45 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.42 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.32 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.27 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.2 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.19 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.18 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.12 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 96.98 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 96.96 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 96.85 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 96.85 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.83 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 96.73 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 96.72 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.48 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 96.45 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.39 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.21 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 96.19 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.17 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 96.0 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 95.99 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 95.82 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 95.47 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 95.46 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 95.37 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 95.27 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 95.03 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 94.91 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 94.82 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 93.54 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 92.91 | |
| 2qx5_A | 661 | Nucleoporin NIC96; mRNA transport, nuclear pore co | 92.47 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 92.27 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 92.12 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 91.82 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 91.54 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 90.1 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 89.03 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 88.33 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 88.06 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 86.62 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 85.75 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 85.46 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 82.13 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 81.92 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 81.44 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-41 Score=383.45 Aligned_cols=499 Identities=10% Similarity=-0.050 Sum_probs=355.5
Q ss_pred HHHHccCChhhHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHH
Q 040319 41 SAYLKLGHVADAYKIFYGLSSPNVVSFTSLISGLAKLGREEEAIELFFRMRSEGIVPNEHSFVAILTACIRLLELELGFQ 120 (812)
Q Consensus 41 ~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~ 120 (812)
..+.+.|.+..+...|+.++.+++..|+.++..|.+.|++++|+.+|++|.. ..|+..++..+..+|.+.|+++.|..
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~ 138 (597)
T 2xpi_A 61 NNTSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKC 138 (597)
T ss_dssp ---------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ccccccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHH
Confidence 3456778888999999999999999999999999999999999999999985 46788999999999999999999999
Q ss_pred HHHHHHHhCCCCchHHHHHHHHHhhhcCCCHHHHHHHHhcCCCC-------------------CcchHHHHHHHHHcCCC
Q 040319 121 IHALIVKMGCVDSVFVTNALMGLYGKFSFCLDYLLKLFDELPHK-------------------DTVSWNTVISSVVNEFE 181 (812)
Q Consensus 121 ~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~~a~~~f~~~~~~-------------------~~~~~~~li~~~~~~g~ 181 (812)
+++.+... .+++.+++.++.+|.++| ++++|.++|+++... +..+|+.++.+|.+.|+
T Consensus 139 ~~~~~~~~--~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 215 (597)
T 2xpi_A 139 LLTKEDLY--NRSSACRYLAAFCLVKLY-DWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSN 215 (597)
T ss_dssp HHHHTCGG--GTCHHHHHHHHHHHHHTT-CHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhcc--ccchhHHHHHHHHHHHHh-hHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCC
Confidence 99987543 678999999999999999 999999999954433 47889999999999999
Q ss_pred hhHHHHHHHHhHhcCCCCCCcchH-HHHHHHHhcCCChHH--HHHH-HHHHHHhCCCCchhHHHHHHHHHHhcCChHHHH
Q 040319 182 YEKAFELFRDMKRDNGFTVDYFTI-STLLTACTGCFVLME--GRAV-HAHAIRIGLGANLSVNNALIGFYTKCGRVKDVV 257 (812)
Q Consensus 182 ~~~A~~l~~~m~~~~g~~pd~~t~-~~ll~~~~~~~~~~~--a~~~-~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 257 (812)
+++|+++|++|. .. .|+..+. ..+...+...+..+. +..+ +..+...+..+...+++.++.+|.+.|++++|.
T Consensus 216 ~~~A~~~~~~~~-~~--~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~ 292 (597)
T 2xpi_A 216 FDRAKECYKEAL-MV--DAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAE 292 (597)
T ss_dssp HHHHHHHHHHHH-HH--CTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHH
T ss_pred HHHHHHHHHHHH-Hh--CchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHH
Confidence 999999999984 32 3544433 333322222211111 1111 233333333334445555556666666666666
Q ss_pred HHHhcCCCCcchhHHHHHHHHHhhCChhHHHHHhccCCC--CCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHh
Q 040319 258 ALLERMPVMDIITLTEIIIAYMEFGYVDLAVEIFDKMPE--KNSVSYNALLAGYCKNGKAMEALGLFVKLLEEGLVLTEF 335 (812)
Q Consensus 258 ~l~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 335 (812)
+ +|+++.+ ++..+|+.++.+|.+.|++++|+.+|++|.+.+.
T Consensus 293 ~-------------------------------~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----- 336 (597)
T 2xpi_A 293 D-------------------------------YLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDP----- 336 (597)
T ss_dssp H-------------------------------HHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----
T ss_pred H-------------------------------HHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCc-----
Confidence 6 6666655 6777788888888888888888888888776431
Q ss_pred HHHHHHHHhccchhhhhHHHHHhhHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCC-CCCceeeeHHHHHHHHH
Q 040319 336 TLTSVVNACGLIMEAKLSEQIHGFVMKFGLGSNDCIEAALLDMLTRCGRMADAEKMFYRWPT-DRDDSIIWTSMICGYAR 414 (812)
Q Consensus 336 t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~-~~~~~~~~~~li~~~~~ 414 (812)
.+..+++.++..|.+.|++++|.++|+++.. .+++..+|+.++..|.+
T Consensus 337 -------------------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 385 (597)
T 2xpi_A 337 -------------------------------YNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLC 385 (597)
T ss_dssp -------------------------------TCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHH
T ss_pred -------------------------------ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHH
Confidence 1223333444445555555555555544431 13345666667777777
Q ss_pred cCChhhHHHHHHHhcccCCCCCChhhHHHHHHHhcCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHhhhcCCHHHHHH
Q 040319 415 SGKPEHAILLFHQSQSEATVVPDEIALTSVLGVCGTLGFHEMGKQIHSYALKTGFSSDLGVANSMVSMYFKCCNMSNAIK 494 (812)
Q Consensus 415 ~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~ 494 (812)
.|++++|+++|+++.+ .. +.+..+++.++.+|.+.|++++|.+
T Consensus 386 ~g~~~~A~~~~~~~~~---~~----------------------------------~~~~~~~~~l~~~~~~~g~~~~A~~ 428 (597)
T 2xpi_A 386 VNKISEARRYFSKSST---MD----------------------------------PQFGPAWIGFAHSFAIEGEHDQAIS 428 (597)
T ss_dssp TTCHHHHHHHHHHHHH---HC----------------------------------TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred hccHHHHHHHHHHHHH---hC----------------------------------CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 7777777777766654 11 2345677778888888888888888
Q ss_pred HHccCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhcCCCCchHHHHHHHHHHhhhh
Q 040319 495 AFNKMPS---HDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKP-DAITFVLIISAYRYTNLNLVDSCRKLFLSMKTI 570 (812)
Q Consensus 495 ~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~ 570 (812)
+|+++.+ .+..+|+.++.+|.+.|++++|+++|++|.+. .| +..++..+...|.+ .|++++|.++|+++.+.
T Consensus 429 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~ 504 (597)
T 2xpi_A 429 AYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYAL--FQYDPLLLNELGVVAFN--KSDMQTAINHFQNALLL 504 (597)
T ss_dssp HHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHH--hCCHHHHHHHHHHHHHh
Confidence 8876643 47788888889999999999999999998873 44 46788888888888 89999999999888763
Q ss_pred c---CccCC--cchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCC
Q 040319 571 Y---NIEPT--SEHYASLVSVLGYWGFLEEAEETINNMP-FQP-KVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDP 643 (812)
Q Consensus 571 ~---~~~p~--~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~ 643 (812)
. +..|+ ..+|..++.+|.+.|++++|.+.++++. ..| +..+|..+..+|...|+.++|...++++++++|+++
T Consensus 505 ~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~ 584 (597)
T 2xpi_A 505 VKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEI 584 (597)
T ss_dssp HHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred hhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCh
Confidence 2 55777 6789999999999999999999998865 445 788999999999999999999999999999999999
Q ss_pred chHHHHHhhhhh
Q 040319 644 ATYILVSNLYSS 655 (812)
Q Consensus 644 ~~~~~l~~~y~~ 655 (812)
.++..|+++|..
T Consensus 585 ~~~~~l~~~~~~ 596 (597)
T 2xpi_A 585 MASDLLKRALEE 596 (597)
T ss_dssp HHHHHHHHTTC-
T ss_pred HHHHHHHHHHhc
Confidence 999999999864
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-40 Score=377.23 Aligned_cols=500 Identities=9% Similarity=-0.055 Sum_probs=396.2
Q ss_pred hhhcCCCHHHHHHHHhcCCCCCcchHHHHHHHHHcCCChhHHHHHHHHhHhcCCCCCCcchHHHHHHHHhcCCChHHHHH
Q 040319 144 YGKFSFCLDYLLKLFDELPHKDTVSWNTVISSVVNEFEYEKAFELFRDMKRDNGFTVDYFTISTLLTACTGCFVLMEGRA 223 (812)
Q Consensus 144 y~~~g~~~~~a~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~ 223 (812)
+.+.| ....++..|+.++.+++..|+.++..|.+.|++++|+.+|++| . +..||..++..+..+|...|++++|.+
T Consensus 63 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~-~--~~~p~~~~~~~l~~~~~~~g~~~~A~~ 138 (597)
T 2xpi_A 63 TSTDG-SFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKV-L--DITGNPNDAFWLAQVYCCTGDYARAKC 138 (597)
T ss_dssp --------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHH-H--HHHCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ccccC-ccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHH-H--hhCCCchHHHHHHHHHHHcCcHHHHHH
Confidence 45667 7888899999999999999999999999999999999999999 4 356788888888899999999999998
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCcchhHHHHHHHHHhhCChhHHHHHhccCCCCCcccHH
Q 040319 224 VHAHAIRIGLGANLSVNNALIGFYTKCGRVKDVVALLERMPVMDIITLTEIIIAYMEFGYVDLAVEIFDKMPEKNSVSYN 303 (812)
Q Consensus 224 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~d~~~~~ 303 (812)
++..+... +++..+++.++.+|.++|++++|.++|+++...+... .++.+.+. ++.-...+..+|+
T Consensus 139 ~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-----~~~~~~~~-------~~~~~~~~~~~~~ 204 (597)
T 2xpi_A 139 LLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDE-----KNANKLLM-------QDGGIKLEASMCY 204 (597)
T ss_dssp HHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC---------------C-------CCSSCCHHHHHHH
T ss_pred HHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccc-----cccccccc-------cccccchhHHHHH
Confidence 88877543 6778888888888888888888888777543222100 01111110 1111223578999
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHcCCCCCHh-HHHHHHHHhccchhhh--hHHHH-HhhHHHhcCCCchhHHHHHHHHH
Q 040319 304 ALLAGYCKNGKAMEALGLFVKLLEEGLVLTEF-TLTSVVNACGLIMEAK--LSEQI-HGFVMKFGLGSNDCIEAALLDML 379 (812)
Q Consensus 304 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~~~~~--~a~~i-~~~~~~~g~~~~~~~~~~Li~~y 379 (812)
.++.+|.+.|++++|+++|++|.+.+ |+.. .+..+...+...+..+ ....+ +..+...+..+...+++.++.+|
T Consensus 205 ~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 282 (597)
T 2xpi_A 205 LRGQVYTNLSNFDRAKECYKEALMVD--AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKT 282 (597)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC--chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHH
Confidence 99999999999999999999999864 4433 3444444333333222 22222 45555556666677788889999
Q ss_pred HhcCCHHHHHHHHhcCCCCCCceeeeHHHHHHHHHcCChhhHHHHHHHhcccCCCCCChhhHHHHHHHhcCccchHHHHH
Q 040319 380 TRCGRMADAEKMFYRWPTDRDDSIIWTSMICGYARSGKPEHAILLFHQSQSEATVVPDEIALTSVLGVCGTLGFHEMGKQ 459 (812)
Q Consensus 380 ~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~ 459 (812)
.++|++++|.++|+++...+++..+|+.++.+|.+.|++++|+++|++|.. .+ +.+..++..++.++...|+.++|..
T Consensus 283 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~A~~ 360 (597)
T 2xpi_A 283 SHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILE-ID-PYNLDVYPLHLASLHESGEKNKLYL 360 (597)
T ss_dssp TTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HC-TTCCTTHHHHHHHHHHHTCHHHHHH
T ss_pred cCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHH-cC-cccHHHHHHHHHHHHHhCCHHHHHH
Confidence 999999999999999984455689999999999999999999999999987 33 2366789999999999999999999
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHhhhcCCHHHHHHHHccCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 040319 460 IHSYALKTGFSSDLGVANSMVSMYFKCCNMSNAIKAFNKMPS---HDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIK 536 (812)
Q Consensus 460 ~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 536 (812)
++..+.+.. +.+..+++.++.+|.++|++++|.++|+++.+ .+..+|+.++.+|.+.|++++|+++|++|.+ ..
T Consensus 361 ~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~ 437 (597)
T 2xpi_A 361 ISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAAR--LF 437 (597)
T ss_dssp HHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--TT
T ss_pred HHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hC
Confidence 999998654 55788999999999999999999999998753 5688999999999999999999999999998 44
Q ss_pred C-CHHHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCCcchHHHHHHHHhhcCChHHHHHHHHhC-------CCCCC
Q 040319 537 P-DAITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLEEAEETINNM-------PFQPK 608 (812)
Q Consensus 537 p-d~~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m-------~~~p~ 608 (812)
| +..++..+..+|.+ .|++++|.++|+.+.+. .+.+..+|..++.+|.+.|++++|+++|+++ +..|+
T Consensus 438 ~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~ 513 (597)
T 2xpi_A 438 QGTHLPYLFLGMQHMQ--LGNILLANEYLQSSYAL--FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEK 513 (597)
T ss_dssp TTCSHHHHHHHHHHHH--HTCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSG
T ss_pred ccchHHHHHHHHHHHH--cCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchh
Confidence 5 66899999999999 99999999999999873 2335889999999999999999999999987 34787
Q ss_pred --HHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCCcchHHHHHHHHHhC
Q 040319 609 --VSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWHNSELVREDMREK 672 (812)
Q Consensus 609 --~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 672 (812)
..+|..++.+|...|++++|+..++++++++|+++.+|..++++|.+.|+|++|.+.++++.+.
T Consensus 514 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 514 PWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAI 579 (597)
T ss_dssp GGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 7899999999999999999999999999999999999999999999999999999999998664
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.94 E-value=2.4e-26 Score=252.48 Aligned_cols=185 Identities=11% Similarity=0.103 Sum_probs=173.5
Q ss_pred eeeeHHHHHHHHHcCChhhHHHHHHHhcccCCCCCChhhHHHHHHHhcCcc---------chHHHHHHHHHHHHhCCCCc
Q 040319 402 SIIWTSMICGYARSGKPEHAILLFHQSQSEATVVPDEIALTSVLGVCGTLG---------FHEMGKQIHSYALKTGFSSD 472 (812)
Q Consensus 402 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~a~~~~~---------~~~~a~~~~~~~~~~g~~~~ 472 (812)
...++.+|.+|++.|++++|+++|++|.+ .|++||.+||+++|.+|+..+ .++.|.++++.|.+.|+.||
T Consensus 26 e~~l~~~id~c~k~G~~~~A~~lf~~M~~-~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd 104 (501)
T 4g26_A 26 EALLKQKLDMCSKKGDVLEALRLYDEARR-NGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPN 104 (501)
T ss_dssp HHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHH-cCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCC
Confidence 44688899999999999999999999999 999999999999999998654 47889999999999999999
Q ss_pred hhHHHHHHHHhhhcCCHHHHHHHHccCCC----CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 040319 473 LGVANSMVSMYFKCCNMSNAIKAFNKMPS----HDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDAITFVLIISA 548 (812)
Q Consensus 473 ~~~~~~Li~~y~k~g~~~~A~~~f~~~~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a 548 (812)
..+||+||++|++.|++++|.++|++|.+ ||..+||+||.+|++.|+.++|.++|++|.+.|+.||..||+.||.+
T Consensus 105 ~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~ 184 (501)
T 4g26_A 105 EATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKV 184 (501)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 99999999999999999999999999864 89999999999999999999999999999999999999999999999
Q ss_pred hcCCCCchHHHHHHHHHHhhhhcCccCCcchHHHHHHHHhhc
Q 040319 549 YRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYW 590 (812)
Q Consensus 549 ~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~ 590 (812)
|++ .|++++|.++|++|.+ .+..|+..+|+.+++.+...
T Consensus 185 ~~~--~g~~d~A~~ll~~Mr~-~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 185 SMD--TKNADKVYKTLQRLRD-LVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHH--TTCHHHHHHHHHHHHH-HTSSBCHHHHHHHHHHHHSH
T ss_pred Hhh--CCCHHHHHHHHHHHHH-hCCCcCHHHHHHHHHHHhcC
Confidence 999 9999999999999997 89999999999999998764
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.93 E-value=8.5e-26 Score=248.14 Aligned_cols=184 Identities=13% Similarity=0.103 Sum_probs=166.2
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC---------hHHHHHHHHHHHHhCCCCchH
Q 040319 65 VSFTSLISGLAKLGREEEAIELFFRMRSEGIVPNEHSFVAILTACIRLLE---------LELGFQIHALIVKMGCVDSVF 135 (812)
Q Consensus 65 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~---------~~~a~~~~~~~~~~g~~~~~~ 135 (812)
..++.+|.+|++.|++++|+++|++|.+.|++||..||++||.+|++.+. ++.|.++++.|.+.|+.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 45788899999999999999999999999999999999999999987654 577889999999999999999
Q ss_pred HHHHHHHHhhhcCCCHHHHHHHHhcCC----CCCcchHHHHHHHHHcCCChhHHHHHHHHhHhcCCCCCCcchHHHHHHH
Q 040319 136 VTNALMGLYGKFSFCLDYLLKLFDELP----HKDTVSWNTVISSVVNEFEYEKAFELFRDMKRDNGFTVDYFTISTLLTA 211 (812)
Q Consensus 136 ~~~~li~~y~~~g~~~~~a~~~f~~~~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~ 211 (812)
+||+||.+|++.| +++.|.++|++|. .||..+||+||.+|++.|+.++|.++|++| ...|+.||..||++||.+
T Consensus 107 tyn~lI~~~~~~g-~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M-~~~G~~Pd~~ty~~Li~~ 184 (501)
T 4g26_A 107 TFTNGARLAVAKD-DPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM-VESEVVPEEPELAALLKV 184 (501)
T ss_dssp HHHHHHHHHHHHT-CHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHTTCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHH-HhcCCCCCHHHHHHHHHH
Confidence 9999999999999 9999999998876 479999999999999999999999999999 888999999999999999
Q ss_pred HhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc
Q 040319 212 CTGCFVLMEGRAVHAHAIRIGLGANLSVNNALIGFYTKC 250 (812)
Q Consensus 212 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 250 (812)
|++.|++++|.+++++|.+.|..|+..+|+.++..|+..
T Consensus 185 ~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 185 SMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999888764
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.93 E-value=1.1e-23 Score=227.38 Aligned_cols=345 Identities=11% Similarity=0.031 Sum_probs=229.2
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHhccchhhhhHHHHHhhHHHhcCCCchhHHHHHHHHHHh
Q 040319 302 YNALLAGYCKNGKAMEALGLFVKLLEEGLVLTEFTLTSVVNACGLIMEAKLSEQIHGFVMKFGLGSNDCIEAALLDMLTR 381 (812)
Q Consensus 302 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~ 381 (812)
+..+...+.+.|++++|...++...+.. +.+..++..+...+...|+++.|...+..+.+.. +.+...+..+...|.+
T Consensus 36 ~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~ 113 (388)
T 1w3b_A 36 LLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLK-PDFIDGYINLAAALVA 113 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHH
Confidence 3334444444555555555554444331 2233344444444444444444444444444332 1233445566666666
Q ss_pred cCCHHHHHHHHhcCCCC-CCceeeeHHHHHHHHHcCChhhHHHHHHHhcccCCCCCC-hhhHHHHHHHhcCccchHHHHH
Q 040319 382 CGRMADAEKMFYRWPTD-RDDSIIWTSMICGYARSGKPEHAILLFHQSQSEATVVPD-EIALTSVLGVCGTLGFHEMGKQ 459 (812)
Q Consensus 382 ~g~~~~A~~~f~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~ 459 (812)
.|++++|.+.|+++... +++...+..+...+...|++++|++.|+++.. ..|+ ..++..+...+...|+++.|..
T Consensus 114 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~g~~~~A~~ 190 (388)
T 1w3b_A 114 AGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIE---TQPNFAVAWSNLGCVFNAQGEIWLAIH 190 (388)
T ss_dssp HSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHTTTCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 66666666666654422 22344555666666666777777777777665 3343 3456666666667777777777
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHhhhcCCHHHHHHHHccCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 040319 460 IHSYALKTGFSSDLGVANSMVSMYFKCCNMSNAIKAFNKMPS---HDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIK 536 (812)
Q Consensus 460 ~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 536 (812)
.+..+++.. +.+...+..+...|...|++++|...|++... .+..+|+.+...|...|++++|++.|+++.+ ..
T Consensus 191 ~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~ 267 (388)
T 1w3b_A 191 HFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIE--LQ 267 (388)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TC
T ss_pred HHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hC
Confidence 777766654 23456677778888888888888888776543 3467788888888888888888888888888 56
Q ss_pred CCH-HHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCCcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHH
Q 040319 537 PDA-ITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLEEAEETINNMP-FQP-KVSVWR 613 (812)
Q Consensus 537 pd~-~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~ 613 (812)
|+. .++..+..++.. .|++++|.+.|+.+.+. .+++...|..++.++.+.|++++|.+.++++. ..| +..+|.
T Consensus 268 p~~~~~~~~l~~~~~~--~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 343 (388)
T 1w3b_A 268 PHFPDAYCNLANALKE--KGSVAEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHS 343 (388)
T ss_dssp SSCHHHHHHHHHHHHH--HSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHH
T ss_pred CCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHH
Confidence 654 567777777777 88888888888888762 23457788888888888888888888888865 445 567888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCC
Q 040319 614 ALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGR 658 (812)
Q Consensus 614 ~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~ 658 (812)
.+...+...|+.++|...++++++++|+++.+|..++.+|.+.|+
T Consensus 344 ~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 344 NLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 888888888888888888888888888888888888888877664
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.93 E-value=4e-23 Score=223.00 Aligned_cols=352 Identities=14% Similarity=0.094 Sum_probs=304.8
Q ss_pred HHHHHhCCChHHHHHHHHHHHHcCCCCCHh-HHHHHHHHhccchhhhhHHHHHhhHHHhcCCCchhHHHHHHHHHHhcCC
Q 040319 306 LAGYCKNGKAMEALGLFVKLLEEGLVLTEF-TLTSVVNACGLIMEAKLSEQIHGFVMKFGLGSNDCIEAALLDMLTRCGR 384 (812)
Q Consensus 306 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~ 384 (812)
...+.+.|++++|+..+.++.+. .|+.. .+..+...+...++++.+...+..+++.. +.+..++..+...|.+.|+
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCC
Confidence 45677889999999999998875 45544 44455556778899999999998888754 4577899999999999999
Q ss_pred HHHHHHHHhcCCCC-CCceeeeHHHHHHHHHcCChhhHHHHHHHhcccCCCCCChhh-HHHHHHHhcCccchHHHHHHHH
Q 040319 385 MADAEKMFYRWPTD-RDDSIIWTSMICGYARSGKPEHAILLFHQSQSEATVVPDEIA-LTSVLGVCGTLGFHEMGKQIHS 462 (812)
Q Consensus 385 ~~~A~~~f~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t-~~~ll~a~~~~~~~~~a~~~~~ 462 (812)
+++|...|+++... +++..+|..+...+.+.|++++|++.|.++.. ..|+... +..+...+...|++++|...+.
T Consensus 83 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 159 (388)
T 1w3b_A 83 LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQ---YNPDLYCVRSDLGNLLKALGRLEEAKACYL 159 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHH---HCTTCTHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 99999999987532 34466799999999999999999999999987 5677664 4556677888999999999999
Q ss_pred HHHHhCCCCchhHHHHHHHHhhhcCCHHHHHHHHccCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH
Q 040319 463 YALKTGFSSDLGVANSMVSMYFKCCNMSNAIKAFNKMPS---HDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDA 539 (812)
Q Consensus 463 ~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~ 539 (812)
.+.+.. +.+..++..+...|.+.|++++|...|+++.+ .+...|..+...+...|++++|+..|++..+ +.|+.
T Consensus 160 ~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~--~~p~~ 236 (388)
T 1w3b_A 160 KAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALS--LSPNH 236 (388)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHH--HCTTC
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCcCC
Confidence 999864 34678899999999999999999999998764 4567899999999999999999999999998 67864
Q ss_pred -HHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCC-cchHHHHHHHHhhcCChHHHHHHHHhCC--CCCCHHHHHHH
Q 040319 540 -ITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPT-SEHYASLVSVLGYWGFLEEAEETINNMP--FQPKVSVWRAL 615 (812)
Q Consensus 540 -~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g~~~~A~~~~~~m~--~~p~~~~~~~l 615 (812)
.++..+..++.. .|++++|.+.|+.+.+ +.|+ ...|..++.++.+.|++++|.+.++++. .+++..+|..+
T Consensus 237 ~~~~~~l~~~~~~--~g~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 311 (388)
T 1w3b_A 237 AVVHGNLACVYYE--QGLIDLAIDTYRRAIE---LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNL 311 (388)
T ss_dssp HHHHHHHHHHHHH--TTCHHHHHHHHHHHHH---TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHH--cCCHHHHHHHHHHHHh---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHH
Confidence 778888888888 9999999999999987 3454 6789999999999999999999999976 34578899999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCCcchHHHHHHHHHh
Q 040319 616 LDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWHNSELVREDMRE 671 (812)
Q Consensus 616 l~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 671 (812)
...+...|+.++|...+++++++.|+++..+..++.+|.+.|++++|.+.++++.+
T Consensus 312 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 367 (388)
T 1w3b_A 312 ANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp HHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999864
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.89 E-value=8.6e-22 Score=217.05 Aligned_cols=347 Identities=11% Similarity=0.024 Sum_probs=244.6
Q ss_pred CcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHhccchhhhhHHHHHhhHHHhcCCCchhHHHHHHH
Q 040319 298 NSVSYNALLAGYCKNGKAMEALGLFVKLLEEGLVLTEFTLTSVVNACGLIMEAKLSEQIHGFVMKFGLGSNDCIEAALLD 377 (812)
Q Consensus 298 d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~ 377 (812)
+...|..+...|.+.|++++|+.+|+++.+.. +.+..++..+..++...|+++.|...+..+++.+ +.+..++..+..
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 102 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGH 102 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHH
Confidence 45568888888899999999999999888752 2234455555555555555555555555555443 123444455555
Q ss_pred HHHhcCCHHHHHHHHhcCCCC-CCce---eeeHHHHHHHHHcCChhhHHHHHHHhcccCCCCCChhhHHHHHHHhcCccc
Q 040319 378 MLTRCGRMADAEKMFYRWPTD-RDDS---IIWTSMICGYARSGKPEHAILLFHQSQSEATVVPDEIALTSVLGVCGTLGF 453 (812)
Q Consensus 378 ~y~~~g~~~~A~~~f~~~~~~-~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~a~~~~~~ 453 (812)
.|.+.|++++|.+.|+++... +++. ..|..++..+...+ +..+...+...|+
T Consensus 103 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~------------------------~~~~a~~~~~~~~ 158 (450)
T 2y4t_A 103 LLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQR------------------------LRSQALNAFGSGD 158 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHH------------------------HHHHHHHHHHHTC
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHH------------------------HHHHHHHHHHcCC
Confidence 555555555555555544311 1112 33333333211100 1111223455666
Q ss_pred hHHHHHHHHHHHHhCCCCchhHHHHHHHHhhhcCCHHHHHHHHccCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHH
Q 040319 454 HEMGKQIHSYALKTGFSSDLGVANSMVSMYFKCCNMSNAIKAFNKMPS---HDIVSWNGLIAGHLLHRQGDEALAVWSSM 530 (812)
Q Consensus 454 ~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m 530 (812)
++.|...+..+.+.. +.+..++..+..+|.+.|++++|...|+++.+ .+..+|+.++..|...|++++|+..|+++
T Consensus 159 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 237 (450)
T 2y4t_A 159 YTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVREC 237 (450)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 777777777766643 34677888899999999999999999998764 56889999999999999999999999999
Q ss_pred HHCCCCCCHHHHHH-H------------HHHhcCCCCchHHHHHHHHHHhhhhcCccCC-----cchHHHHHHHHhhcCC
Q 040319 531 EKASIKPDAITFVL-I------------ISAYRYTNLNLVDSCRKLFLSMKTIYNIEPT-----SEHYASLVSVLGYWGF 592 (812)
Q Consensus 531 ~~~g~~pd~~t~~~-l------------l~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~~y~~li~~l~~~g~ 592 (812)
.+ ..|+...... + ..+|.. .|++++|..+|+.+.+ +.|+ ..+|..++.++.+.|+
T Consensus 238 ~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~~A~~~~~~~l~---~~p~~~~~~~~~~~~l~~~~~~~g~ 310 (450)
T 2y4t_A 238 LK--LDQDHKRCFAHYKQVKKLNKLIESAEELIR--DGRYTDATSKYESVMK---TEPSIAEYTVRSKERICHCFSKDEK 310 (450)
T ss_dssp HH--HCTTCHHHHHHHHHHHHHHHHHHHHHHHHH--HTCHHHHHHHHHHHHH---HCCSSHHHHHHHHHHHHHHHHTTTC
T ss_pred HH--hCCChHHHHHHHHHHHHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHh---cCCcchHHHHHHHHHHHHHHHHCCC
Confidence 98 6787655432 2 567888 9999999999999987 3455 4589999999999999
Q ss_pred hHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHH------------hhhhhCC-
Q 040319 593 LEEAEETINNMP-FQP-KVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVS------------NLYSSSG- 657 (812)
Q Consensus 593 ~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~------------~~y~~~g- 657 (812)
+++|++.++++. ..| +..+|..+..+|...|+.+.|...++++++++|+++..+..++ +.|...|
T Consensus 311 ~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~ 390 (450)
T 2y4t_A 311 PVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGV 390 (450)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCS
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCC
Confidence 999999999965 445 6889999999999999999999999999999999999999999 7788888
Q ss_pred -CcchHHHHHHHHHhCCCCCCC
Q 040319 658 -RWHNSELVREDMREKGFRKHP 678 (812)
Q Consensus 658 -~~~~a~~~~~~m~~~g~~~~~ 678 (812)
++....++++.+++..++..|
T Consensus 391 ~~~~~~~~~~~~y~~~~l~~~p 412 (450)
T 2y4t_A 391 KRNAKKQEIIKAYRKLALQWHP 412 (450)
T ss_dssp STTCCTTHHHHHHHHHHHHSCG
T ss_pred CccCCHHHHHHHHHHHHHHhCC
Confidence 333334444444433333333
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.87 E-value=4.2e-21 Score=215.44 Aligned_cols=445 Identities=11% Similarity=-0.010 Sum_probs=213.2
Q ss_pred chHHHHHHHHHcCCChhHHHHHHHHhHhcCCCCCCcchHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 040319 167 VSWNTVISSVVNEFEYEKAFELFRDMKRDNGFTVDYFTISTLLTACTGCFVLMEGRAVHAHAIRIGLGANLSVNNALIGF 246 (812)
Q Consensus 167 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 246 (812)
..|......+.+.|++++|+..|+++... .||..++..+..++...|+++.|.+.+..+++.. +.+...+..+..+
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 82 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALEL---KEDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASA 82 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhc---CccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHH
Confidence 34556667788888888888888888332 2677777778888888888888888888887765 4456677777788
Q ss_pred HHhcCChHHHHHHHhcCC---CCcchhHHHHHHHHHhhCChhHHHHHhccCCC----CCcccHHHHHHHHHhCCChHHHH
Q 040319 247 YTKCGRVKDVVALLERMP---VMDIITLTEIIIAYMEFGYVDLAVEIFDKMPE----KNSVSYNALLAGYCKNGKAMEAL 319 (812)
Q Consensus 247 ~~~~g~~~~A~~l~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~----~d~~~~~~li~~~~~~g~~~~A~ 319 (812)
|.+.|++++|...|+++. ..+......++..+........+.+.+..+.. ++...++.-...
T Consensus 83 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~----------- 151 (514)
T 2gw1_A 83 NEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKER----------- 151 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------------
T ss_pred HHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHH-----------
Confidence 888888888887666542 11222222233322222222222222221111 011100000000
Q ss_pred HHHHHHHHcCCCCCHhHHHHHHHHhccchhhhhHHHHHhhHHHhcCCCchhHHHHHHHHHHh---cCCHHHHHHHHhcCC
Q 040319 320 GLFVKLLEEGLVLTEFTLTSVVNACGLIMEAKLSEQIHGFVMKFGLGSNDCIEAALLDMLTR---CGRMADAEKMFYRWP 396 (812)
Q Consensus 320 ~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~---~g~~~~A~~~f~~~~ 396 (812)
.......|+.......+..+........ ..-+.+...+..+...+.. .|++++|...|+++.
T Consensus 152 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 216 (514)
T 2gw1_A 152 -----KDKQENLPSVTSMASFFGIFKPELTFAN----------YDESNEADKELMNGLSNLYKRSPESYDKADESFTKAA 216 (514)
T ss_dssp ----------CCCCHHHHHHHHTTSCCCCCCSS----------CCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHH
T ss_pred -----HhhccCCchhHHHHHHHhhcCHHHHHHH----------hcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHH
Confidence 0001112222222211111111000000 0001112222222222222 555666655555443
Q ss_pred C--------C-------CCceeeeHHHHHHHHHcCChhhHHHHHHHhcccCCCCCChhhHHHHHHHhcCccchHHHHHHH
Q 040319 397 T--------D-------RDDSIIWTSMICGYARSGKPEHAILLFHQSQSEATVVPDEIALTSVLGVCGTLGFHEMGKQIH 461 (812)
Q Consensus 397 ~--------~-------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~ 461 (812)
. . +.+..+|..+...+...|++++|+..|+++.. ..|+...+..+...+...|+++.|...+
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 293 (514)
T 2gw1_A 217 RLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIE---LFPRVNSYIYMALIMADRNDSTEYYNYF 293 (514)
T ss_dssp HHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHH---HCCCHHHHHHHHHHHHTSSCCTTGGGHH
T ss_pred HHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---hCccHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 1 0 11233455555566666666666666666554 2233334444445555555555555555
Q ss_pred HHHHHhCCCCchhHHHHHHHHhhhcCCHHHHHHHHccCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 040319 462 SYALKTGFSSDLGVANSMVSMYFKCCNMSNAIKAFNKMPS---HDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPD 538 (812)
Q Consensus 462 ~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd 538 (812)
..+.+.. +.+..++..+...|.+.|++++|...|+++.+ .+...|..+...|...|++++|+..|+++.+ ..|+
T Consensus 294 ~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~ 370 (514)
T 2gw1_A 294 DKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKR--KFPE 370 (514)
T ss_dssp HHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHH--HSTT
T ss_pred HHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--Hccc
Confidence 5554432 22344455555555555555555555554321 2344555555555555555555555555555 2332
Q ss_pred -HHHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCC----cchHHHHHHHHhh---cCChHHHHHHHHhCC-CCC-C
Q 040319 539 -AITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPT----SEHYASLVSVLGY---WGFLEEAEETINNMP-FQP-K 608 (812)
Q Consensus 539 -~~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~y~~li~~l~~---~g~~~~A~~~~~~m~-~~p-~ 608 (812)
..++..+...+.. .|++++|...|+.+.+...-.|+ ...|..++.++.+ .|++++|.+.++++. ..| +
T Consensus 371 ~~~~~~~la~~~~~--~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~ 448 (514)
T 2gw1_A 371 APEVPNFFAEILTD--KNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRS 448 (514)
T ss_dssp CSHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTC
T ss_pred CHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCccc
Confidence 2444444444545 55555555555555431111111 1255555555555 555555555555532 222 3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHH
Q 040319 609 VSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILV 649 (812)
Q Consensus 609 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 649 (812)
..+|..+...+...|+.+.|...++++++++|+++..+..+
T Consensus 449 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 489 (514)
T 2gw1_A 449 EQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAI 489 (514)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHH
Confidence 44555555555555555555555555555555544444333
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.87 E-value=6.4e-21 Score=213.90 Aligned_cols=420 Identities=10% Similarity=0.002 Sum_probs=282.8
Q ss_pred HHHHHhcCChHHHHHHHhcCC--CCcchhHHHHHHHHHhhCChhHHHHHhccCCC---CCcccHHHHHHHHHhCCChHHH
Q 040319 244 IGFYTKCGRVKDVVALLERMP--VMDIITLTEIIIAYMEFGYVDLAVEIFDKMPE---KNSVSYNALLAGYCKNGKAMEA 318 (812)
Q Consensus 244 i~~~~~~g~~~~A~~l~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~A 318 (812)
...|.+.|++++|...|+++. .|+...|..+..+|.+.|++++|+..|+++.+ .+...|..+..+|.+.|++++|
T Consensus 13 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 92 (514)
T 2gw1_A 13 GNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADA 92 (514)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhhHHHH
Confidence 334444444444444444432 23344444444444444444444445554432 3455777888888888888888
Q ss_pred HHHHHHHHHcCCCCCHhHHHHHHHHhccchhhhhHHHHHhhHHHhcCCCchhHHHHH---HHHHHhcCCHHHHHHHHhcC
Q 040319 319 LGLFVKLLEEGLVLTEFTLTSVVNACGLIMEAKLSEQIHGFVMKFGLGSNDCIEAAL---LDMLTRCGRMADAEKMFYRW 395 (812)
Q Consensus 319 ~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~L---i~~y~~~g~~~~A~~~f~~~ 395 (812)
...|+++...+. ++......++..+..........+.++.+...+..|+......- ............+...+...
T Consensus 93 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (514)
T 2gw1_A 93 MFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIF 171 (514)
T ss_dssp HHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTS
T ss_pred HHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhc
Confidence 888888887653 34444444444443333333333333222222111111100000 00011111112222222222
Q ss_pred CC--------CCCceeeeHHHHHHHHH---cCChhhHHHHHHHhcc-----cCCC-------CCChhhHHHHHHHhcCcc
Q 040319 396 PT--------DRDDSIIWTSMICGYAR---SGKPEHAILLFHQSQS-----EATV-------VPDEIALTSVLGVCGTLG 452 (812)
Q Consensus 396 ~~--------~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~-----~~g~-------~p~~~t~~~ll~a~~~~~ 452 (812)
.. .+++...|......+.. .|++++|+..|+++.. .... ..+..++..+...+...|
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (514)
T 2gw1_A 172 KPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKN 251 (514)
T ss_dssp CCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSS
T ss_pred CHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCC
Confidence 21 11223334444444444 8999999999999875 1111 122346667778889999
Q ss_pred chHHHHHHHHHHHHhCCCCchhHHHHHHHHhhhcCCHHHHHHHHccCCC---CChhHHHHHHHHHHhcCChHHHHHHHHH
Q 040319 453 FHEMGKQIHSYALKTGFSSDLGVANSMVSMYFKCCNMSNAIKAFNKMPS---HDIVSWNGLIAGHLLHRQGDEALAVWSS 529 (812)
Q Consensus 453 ~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~ 529 (812)
+++.|...+..+.+.... ..++..+...|.+.|++++|...|+++.. .+...|..+...|...|++++|+..|++
T Consensus 252 ~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 329 (514)
T 2gw1_A 252 DPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDK 329 (514)
T ss_dssp CHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 999999999999987644 88889999999999999999999987654 4678899999999999999999999999
Q ss_pred HHHCCCCCC-HHHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCCcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC
Q 040319 530 MEKASIKPD-AITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLEEAEETINNMP-FQP 607 (812)
Q Consensus 530 m~~~g~~pd-~~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p 607 (812)
+.+ ..|+ ..++..+...+.. .|++++|..+|+.+.+.. +.+...|..+..++.+.|++++|.+.++++. ..|
T Consensus 330 ~~~--~~~~~~~~~~~l~~~~~~--~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 403 (514)
T 2gw1_A 330 AKE--LDPENIFPYIQLACLAYR--ENKFDDCETLFSEAKRKF--PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELEN 403 (514)
T ss_dssp HHH--TCSSCSHHHHHHHHHTTT--TTCHHHHHHHHHHHHHHS--TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHH--hChhhHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHHc--ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhh
Confidence 999 5565 4778888888888 999999999999988631 2347889999999999999999999998864 222
Q ss_pred ---C----HHHHHHHHHHHHh---cCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCCcchHHHHHHHHHhC
Q 040319 608 ---K----VSVWRALLDSCRI---RLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWHNSELVREDMREK 672 (812)
Q Consensus 608 ---~----~~~~~~ll~~~~~---~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 672 (812)
+ ..+|..+...+.. .|+.+.|...++++++++|+++..+..++.+|.+.|++++|.+.+++..+.
T Consensus 404 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 478 (514)
T 2gw1_A 404 KLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADL 478 (514)
T ss_dssp TSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 2 3388889999999 999999999999999999999999999999999999999999999988653
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.84 E-value=4e-19 Score=200.51 Aligned_cols=421 Identities=8% Similarity=-0.010 Sum_probs=234.9
Q ss_pred cchHHHHHHHHHcCCChhHHHHHHHHhHhcCCCCCCcchHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 040319 166 TVSWNTVISSVVNEFEYEKAFELFRDMKRDNGFTVDYFTISTLLTACTGCFVLMEGRAVHAHAIRIGLGANLSVNNALIG 245 (812)
Q Consensus 166 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 245 (812)
...|..+...+.+.|++++|++.|+.+.... +.+..++..+..++...|+++.|.+.+..+++.. +.+..++..+..
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~ 101 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD--PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRAS 101 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC--CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHH
Confidence 4566677777777778888887777773321 2233445555555556666666666666665543 334445555555
Q ss_pred HHHhcCChHHHHHHHhcCCCCcchhHHHHHHHHHhhCChhHHHHHhccCCCCCcccHHHHHHHHHhCCChHHHHHHHHHH
Q 040319 246 FYTKCGRVKDVVALLERMPVMDIITLTEIIIAYMEFGYVDLAVEIFDKMPEKNSVSYNALLAGYCKNGKAMEALGLFVKL 325 (812)
Q Consensus 246 ~~~~~g~~~~A~~l~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m 325 (812)
.|...|++++|.. .|+.+ ..++...+..+..+...+...+|...++++
T Consensus 102 ~~~~~g~~~~A~~-------------------------------~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 149 (537)
T 3fp2_A 102 ANESLGNFTDAMF-------------------------------DLSVL-SLNGDFDGASIEPMLERNLNKQAMKVLNEN 149 (537)
T ss_dssp HHHHHTCHHHHHH-------------------------------HHHHH-C-----------CHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHH-------------------------------HHHHH-hcCCCCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555 43321 111111122222333334445555555555
Q ss_pred HHc------CCCCCHhHHHHHHHHhccchhhhhHHHHHhhHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCC
Q 040319 326 LEE------GLVLTEFTLTSVVNACGLIMEAKLSEQIHGFVMKFGLGSNDCIEAALLDMLTRCGRMADAEKMFYRWPTDR 399 (812)
Q Consensus 326 ~~~------g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~ 399 (812)
... ...|+...+. .|....+.+.+...+.......
T Consensus 150 l~~~~~~~~~~~~~~~~~~---------------------------------------~~~~~~~~~~~~~~~~~~~~~~ 190 (537)
T 3fp2_A 150 LSKDEGRGSQVLPSNTSLA---------------------------------------SFFGIFDSHLEVSSVNTSSNYD 190 (537)
T ss_dssp CC-------CCCCCHHHHH---------------------------------------HHHHTSCHHHHHHTSCCCCSSC
T ss_pred HHhCccccccccchHhHHH---------------------------------------HHHHhcChHHHHHHHhhccccc
Confidence 332 1223322222 2333344444444443333111
Q ss_pred Cce-eeeHHHHHHHH--------HcCChhhHHHHHHHhcccCCCCCCh--------hhHHHHHHHhcCccchHHHHHHHH
Q 040319 400 DDS-IIWTSMICGYA--------RSGKPEHAILLFHQSQSEATVVPDE--------IALTSVLGVCGTLGFHEMGKQIHS 462 (812)
Q Consensus 400 ~~~-~~~~~li~~~~--------~~g~~~~A~~~~~~m~~~~g~~p~~--------~t~~~ll~a~~~~~~~~~a~~~~~ 462 (812)
+.. ..+..+...+. ..|++++|+.+|+++.. ..|+. .++..+...+...|+++.|...+.
T Consensus 191 ~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~---~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~ 267 (537)
T 3fp2_A 191 TAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLS---ANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQ 267 (537)
T ss_dssp SSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC-----CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH---HCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 100 01111111111 11355666666666654 33332 123333344555566666666666
Q ss_pred HHHHhCCCCchhHHHHHHHHhhhcCCHHHHHHHHccCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH
Q 040319 463 YALKTGFSSDLGVANSMVSMYFKCCNMSNAIKAFNKMPS---HDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDA 539 (812)
Q Consensus 463 ~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~ 539 (812)
.+.+.. |+...+..+...|.+.|++++|...|+++.+ .+..+|..+...|...|++++|++.|+++.+ ..|+.
T Consensus 268 ~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~--~~~~~ 343 (537)
T 3fp2_A 268 ESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQS--LNPEN 343 (537)
T ss_dssp HHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTC
T ss_pred HHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--hCCCC
Confidence 666543 3355666666777777777777777765543 3456677777777777777777777777777 44543
Q ss_pred -HHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCCcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-------CHH
Q 040319 540 -ITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLEEAEETINNMP-FQP-------KVS 610 (812)
Q Consensus 540 -~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p-------~~~ 610 (812)
..+..+...+.. .|++++|..+|+.+.+.. +.+...|..+..++.+.|++++|.+.++++. ..| ...
T Consensus 344 ~~~~~~la~~~~~--~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 419 (537)
T 3fp2_A 344 VYPYIQLACLLYK--QGKFTESEAFFNETKLKF--PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIG 419 (537)
T ss_dssp SHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHC--TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTH
T ss_pred HHHHHHHHHHHHH--cCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHH
Confidence 556666666666 777777777777776521 2235577777777777788777777777643 111 112
Q ss_pred HHHHHHHHHHhc----------CCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCCcchHHHHHHHHHh
Q 040319 611 VWRALLDSCRIR----------LNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWHNSELVREDMRE 671 (812)
Q Consensus 611 ~~~~ll~~~~~~----------~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 671 (812)
.+..+...+... |+++.|...++++++++|+++.++..++.+|.+.|++++|.+.+++..+
T Consensus 420 ~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 490 (537)
T 3fp2_A 420 PLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAI 490 (537)
T ss_dssp HHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 233344455666 8888888888888888888888888888888888888888888887754
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.84 E-value=2.6e-19 Score=197.17 Aligned_cols=355 Identities=11% Similarity=0.051 Sum_probs=215.9
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCcchhHHHHHHHHHhhCChhHHHHHhccCCCCCcccHHHHHHHHHhCC
Q 040319 234 GANLSVNNALIGFYTKCGRVKDVVALLERMPVMDIITLTEIIIAYMEFGYVDLAVEIFDKMPEKNSVSYNALLAGYCKNG 313 (812)
Q Consensus 234 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g 313 (812)
+.+...+..+...|.+.|++++|..+|+++.. ....+..+|..+..+|.+.|
T Consensus 23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~----------------------------~~p~~~~~~~~l~~~~~~~g 74 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAAGQLADALSQFHAAVD----------------------------GDPDNYIAYYRRATVFLAMG 74 (450)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----------------------------HCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----------------------------hCCccHHHHHHHHHHHHHCC
Confidence 34556666677777777777777775554321 01134445555666666666
Q ss_pred ChHHHHHHHHHHHHcCCCCCHhHHHHHHHHhccchhhhhHHHHHhhHHHhcCCCch---hHHHHHHHH------------
Q 040319 314 KAMEALGLFVKLLEEGLVLTEFTLTSVVNACGLIMEAKLSEQIHGFVMKFGLGSND---CIEAALLDM------------ 378 (812)
Q Consensus 314 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~---~~~~~Li~~------------ 378 (812)
++++|+..|+++.+.+ +.+...+..+...+...|+++.|...+..+.+... .+. .++..+...
T Consensus 75 ~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~ 152 (450)
T 2y4t_A 75 KSKAALPDLTKVIQLK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNP-SENEEKEAQSQLIKSDEMQRLRSQALN 152 (450)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCC-CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CChhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666665543 12344555555556666666666666666655321 233 555555444
Q ss_pred HHhcCCHHHHHHHHhcCCCC-CCceeeeHHHHHHHHHcCChhhHHHHHHHhcccCCCCCChhhHHHHHHHhcCccchHHH
Q 040319 379 LTRCGRMADAEKMFYRWPTD-RDDSIIWTSMICGYARSGKPEHAILLFHQSQSEATVVPDEIALTSVLGVCGTLGFHEMG 457 (812)
Q Consensus 379 y~~~g~~~~A~~~f~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~a~~~~~~~~~a 457 (812)
|.+.|++++|...|+++... +.+...|..+...|.+.|++++|++.|+++.. ..
T Consensus 153 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~---------------------- 207 (450)
T 2y4t_A 153 AFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASK---LK---------------------- 207 (450)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHH---HH----------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hC----------------------
Confidence 66666666666666654311 23345566666666666666666666666554 11
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHhhhcCCHHHHHHHHccCCC--C-ChhHHHHH------------HHHHHhcCChHH
Q 040319 458 KQIHSYALKTGFSSDLGVANSMVSMYFKCCNMSNAIKAFNKMPS--H-DIVSWNGL------------IAGHLLHRQGDE 522 (812)
Q Consensus 458 ~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~--~-~~~~~~~l------------i~~~~~~g~~~~ 522 (812)
+.+..++..+...|.+.|++++|...|+++.. | +...|..+ ...|...|++++
T Consensus 208 ------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 275 (450)
T 2y4t_A 208 ------------NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTD 275 (450)
T ss_dssp ------------CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred ------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHH
Confidence 22344555555556666666666666555432 2 22333333 777888888888
Q ss_pred HHHHHHHHHHCCCCCCH-----HHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccC-CcchHHHHHHHHhhcCChHHH
Q 040319 523 ALAVWSSMEKASIKPDA-----ITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEP-TSEHYASLVSVLGYWGFLEEA 596 (812)
Q Consensus 523 A~~l~~~m~~~g~~pd~-----~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~li~~l~~~g~~~~A 596 (812)
|+..|+++.+ +.|+. ..+..+..++.. .|++++|...++.+.+ +.| +...|..+..+|...|++++|
T Consensus 276 A~~~~~~~l~--~~p~~~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~a~~---~~p~~~~~~~~l~~~~~~~~~~~~A 348 (450)
T 2y4t_A 276 ATSKYESVMK--TEPSIAEYTVRSKERICHCFSK--DEKPVEAIRVCSEVLQ---MEPDNVNALKDRAEAYLIEEMYDEA 348 (450)
T ss_dssp HHHHHHHHHH--HCCSSHHHHHHHHHHHHHHHHT--TTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHh--cCCcchHHHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHH---hCcccHHHHHHHHHHHHHhcCHHHH
Confidence 8888888888 56663 356666777777 8888888888888765 234 467888888888888888888
Q ss_pred HHHHHhCC-CCC-CHHHHHHHHHH------------HHhcC-----CHHHHHHHHHH-HHccCCCCCc----------hH
Q 040319 597 EETINNMP-FQP-KVSVWRALLDS------------CRIRL-----NTTIGKRVAKH-ILAMEPQDPA----------TY 646 (812)
Q Consensus 597 ~~~~~~m~-~~p-~~~~~~~ll~~------------~~~~~-----~~~~a~~~~~~-~~~~~p~~~~----------~~ 646 (812)
.+.++++. ..| +..++..+..+ |...| +.+++.+.+++ +++..|++.. .+
T Consensus 349 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~ 428 (450)
T 2y4t_A 349 IQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKF 428 (450)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHH
Confidence 88888754 566 45566555533 22333 55677888876 7888887432 33
Q ss_pred HHHHhhhhhCCCcchH
Q 040319 647 ILVSNLYSSSGRWHNS 662 (812)
Q Consensus 647 ~~l~~~y~~~g~~~~a 662 (812)
..+...|...|+-+.+
T Consensus 429 ~~i~~ay~~L~d~~~r 444 (450)
T 2y4t_A 429 IDIAAAKEVLSDPEMR 444 (450)
T ss_dssp HHHHHHHHHSSGGGGC
T ss_pred HHHHHHHHHhCCHHHH
Confidence 4455556555555443
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.83 E-value=5.2e-19 Score=199.58 Aligned_cols=436 Identities=10% Similarity=0.011 Sum_probs=305.6
Q ss_pred hHHHHHHHHHhhhcCCCHHHHHHHHhcCC---CCCcchHHHHHHHHHcCCChhHHHHHHHHhHhcCCCCCCcchHHHHHH
Q 040319 134 VFVTNALMGLYGKFSFCLDYLLKLFDELP---HKDTVSWNTVISSVVNEFEYEKAFELFRDMKRDNGFTVDYFTISTLLT 210 (812)
Q Consensus 134 ~~~~~~li~~y~~~g~~~~~a~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~ 210 (812)
...+..+-..|.+.| +++.|.+.|+++. +.+..+|..+...|.+.|++++|++.|+.+.... +.+..++..+..
T Consensus 25 a~~~~~~g~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~ 101 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAK-NFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK--PDHSKALLRRAS 101 (537)
T ss_dssp HHHHHHHHHHHHHTT-CCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc-cHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CchHHHHHHHHH
Confidence 456677788889999 9999999999875 3578899999999999999999999999984332 334567888888
Q ss_pred HHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCC------cchhHHHHHHHHHhhCCh
Q 040319 211 ACTGCFVLMEGRAVHAHAIRIGLGANLSVNNALIGFYTKCGRVKDVVALLERMPVM------DIITLTEIIIAYMEFGYV 284 (812)
Q Consensus 211 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~------~~~~~~~li~~~~~~g~~ 284 (812)
++...|++++|...+. .+. ..|+ ..+..+..+...+....|...++.+... ........+..+....+.
T Consensus 102 ~~~~~g~~~~A~~~~~-~~~--~~~~--~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (537)
T 3fp2_A 102 ANESLGNFTDAMFDLS-VLS--LNGD--FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDS 176 (537)
T ss_dssp HHHHHTCHHHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCH
T ss_pred HHHHcCCHHHHHHHHH-HHh--cCCC--CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcCh
Confidence 8999999999999996 332 2222 2223344555556667777766665321 112223334444445555
Q ss_pred hHHHHHhccCCCCCcc---cHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHhccchhhhhHHHHHhhHH
Q 040319 285 DLAVEIFDKMPEKNSV---SYNALLAGYCKNGKAMEALGLFVKLLEEGLVLTEFTLTSVVNACGLIMEAKLSEQIHGFVM 361 (812)
Q Consensus 285 ~~A~~~f~~m~~~d~~---~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~ 361 (812)
+.+...+.+....+.. .+..+...+... .++
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------------------------------~~~------------ 210 (537)
T 3fp2_A 177 HLEVSSVNTSSNYDTAYALLSDALQRLYSAT----------------------------------DEG------------ 210 (537)
T ss_dssp HHHHHTSCCCCSSCSSHHHHHHHHHHHHTCS----------------------------------HHH------------
T ss_pred HHHHHHHhhccccccHHHHHHHHHHHHHHhh----------------------------------hhh------------
Confidence 5555444444332221 111111111000 000
Q ss_pred HhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCC-c-------eeeeHHHHHHHHHcCChhhHHHHHHHhcccCC
Q 040319 362 KFGLGSNDCIEAALLDMLTRCGRMADAEKMFYRWPTDRD-D-------SIIWTSMICGYARSGKPEHAILLFHQSQSEAT 433 (812)
Q Consensus 362 ~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~-~-------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g 433 (812)
.....|++++|..+|+++....| + ..+|..+...+...|++++|+..|.+...
T Consensus 211 ----------------~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~--- 271 (537)
T 3fp2_A 211 ----------------YLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESIN--- 271 (537)
T ss_dssp ----------------HHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---
T ss_pred ----------------hHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHh---
Confidence 01112345556666655442222 1 12355666778888999999999999887
Q ss_pred CCCChhhHHHHHHHhcCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHhhhcCCHHHHHHHHccCCC---CChhHHHHH
Q 040319 434 VVPDEIALTSVLGVCGTLGFHEMGKQIHSYALKTGFSSDLGVANSMVSMYFKCCNMSNAIKAFNKMPS---HDIVSWNGL 510 (812)
Q Consensus 434 ~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~l 510 (812)
..|+...+..+...+...|+++.|...+..+.+.. +.+..++..+...|.+.|++++|...|+++.+ .+...|..+
T Consensus 272 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l 350 (537)
T 3fp2_A 272 LHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQL 350 (537)
T ss_dssp HCCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHH
T ss_pred cCCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 56777778888888999999999999999988865 34677899999999999999999999988754 456789999
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCC----cchHHHHHH
Q 040319 511 IAGHLLHRQGDEALAVWSSMEKASIKPDA-ITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPT----SEHYASLVS 585 (812)
Q Consensus 511 i~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~y~~li~ 585 (812)
...|...|++++|++.|+++.+ ..|+. ..+..+...+.. .|++++|.+.|+.+.+...-.+. ...+..+..
T Consensus 351 a~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~ 426 (537)
T 3fp2_A 351 ACLLYKQGKFTESEAFFNETKL--KFPTLPEVPTFFAEILTD--RGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKAT 426 (537)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH--HCTTCTHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHH--hCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHH
Confidence 9999999999999999999998 55664 677778888888 99999999999998763211111 222455567
Q ss_pred HHhhc----------CChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHH
Q 040319 586 VLGYW----------GFLEEAEETINNMP-FQP-KVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYI 647 (812)
Q Consensus 586 ~l~~~----------g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 647 (812)
++.+. |++++|...+++.. ..| +..+|..+...+...|+.+.|...+++++++.|+++....
T Consensus 427 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 500 (537)
T 3fp2_A 427 ILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQ 500 (537)
T ss_dssp HHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHHH
T ss_pred HHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHH
Confidence 78888 99999999999865 445 6788999999999999999999999999999998766544
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.82 E-value=1.9e-15 Score=174.84 Aligned_cols=576 Identities=10% Similarity=0.054 Sum_probs=388.7
Q ss_pred cCCCccchHHHHHHHHccCChhhHHHHHhcCCC---------------CC----------------hhhH------HHHH
Q 040319 29 LEQDTRFGNPLISAYLKLGHVADAYKIFYGLSS---------------PN----------------VVSF------TSLI 71 (812)
Q Consensus 29 ~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---------------~~----------------~~~~------~~li 71 (812)
+..|+.+....|.+.++.|.+.+..++..+-.- +| .+.| ...|
T Consensus 721 ~s~d~~vhfkyi~aa~~~~q~~everi~res~~y~~e~vk~flk~~kl~d~~pli~vCdr~~~v~~l~~yLy~n~~~~~i 800 (1630)
T 1xi4_A 721 FSQDPDVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYI 800 (1630)
T ss_pred ccCChHHHHHHHHHHHHhCCchhhhHHhccCCCCCHHHHHHHHhhCCCCCCCCceeeccccccHHHHHHHHHhcCchhHH
Confidence 466889999999999999999999988765320 11 1111 2345
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCChhhHH-------------HHHHHHHhcCChHHHHHHHHHHHHhCCCCchHHHH
Q 040319 72 SGLAKLGREEEAIELFFRMRSEGIVPNEHSFV-------------AILTACIRLLELELGFQIHALIVKMGCVDSVFVTN 138 (812)
Q Consensus 72 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~-------------~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 138 (812)
..|.+.-++..+-.+.-.++..+ -+..... .|+..+-+.+++......++.-+..| ..++.++|
T Consensus 801 e~yv~~vnp~~~p~Vvg~lld~d--~~e~~ik~ll~~v~~~~~~~~lv~~~ekrnrLkll~p~LE~~~~~g-~~~~~~hn 877 (1630)
T 1xi4_A 801 EIYVQKVNPSRLPVVIGGLLDVD--CSEDVIKNLILVVRGQFSTDELVAEVEKRNRLKLLLPWLEARIHEG-CEEPATHN 877 (1630)
T ss_pred HHHHhccCCcccchhhhhhhcCC--CCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCCHHHHH
Confidence 55555555554444444443322 2222333 33333444444555555566666667 57889999
Q ss_pred HHHHHhhhcCCCHHHHHHHHhcCCCCCcchHHHHHHHHHcCCChhHHHHHHHHhHhcC----CCCCCcchHHHHHHHHhc
Q 040319 139 ALMGLYGKFSFCLDYLLKLFDELPHKDTVSWNTVISSVVNEFEYEKAFELFRDMKRDN----GFTVDYFTISTLLTACTG 214 (812)
Q Consensus 139 ~li~~y~~~g~~~~~a~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~----g~~pd~~t~~~ll~~~~~ 214 (812)
+|...|...+.+.+.-.+ + |..-=..++.-||...|+.-|.-.|++= ... .+.-....|-...+-+.+
T Consensus 878 alakiyid~n~npe~fL~---~----n~~yd~~~vgkyce~rDp~la~iay~~g-~~d~eli~vt~~n~l~k~~arylv~ 949 (1630)
T 1xi4_A 878 ALAKIYIDSNNNPERFLR---E----NPYYDSRVVGKYCEKRDPHLACVAYERG-QCDLELINVCNENSLFKSLSRYLVR 949 (1630)
T ss_pred HHHHHHhccCCCHHHHhh---c----cCcccHHHHHHHHHhcCcchHHHHhccc-CCcHHHHHHHhcchhHHHHHHHHHH
Confidence 999999877644443221 1 1111111233344444444333333210 000 001111112222222222
Q ss_pred CCCh-----------HHHHHHHHHHHHhCC--CCchhHHHHHHHHHHhcCChHHHHHHHhcCC-CC-----cchhHHHHH
Q 040319 215 CFVL-----------MEGRAVHAHAIRIGL--GANLSVNNALIGFYTKCGRVKDVVALLERMP-VM-----DIITLTEII 275 (812)
Q Consensus 215 ~~~~-----------~~a~~~~~~~~~~g~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~-~~-----~~~~~~~li 275 (812)
..+. +.=+++.++.....+ ..++.-....+..|...|.+.+|.+++++.. .+ +....+.++
T Consensus 950 r~d~~lW~~vl~~~n~~RR~Lidqv~a~aL~e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi 1029 (1630)
T 1xi4_A 950 RKDPELWGSVLLESNPYRRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLI 1029 (1630)
T ss_pred hcCHHHHHHHhcCCcHHHHHHHHHHHHhhcccccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHH
Confidence 2222 222344444443332 2344445677888999999999999999985 22 235566677
Q ss_pred HHHHhhCChhHHHHHhccCCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHhccchhhhhHHH
Q 040319 276 IAYMEFGYVDLAVEIFDKMPEKNSVSYNALLAGYCKNGKAMEALGLFVKLLEEGLVLTEFTLTSVVNACGLIMEAKLSEQ 355 (812)
Q Consensus 276 ~~~~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~ 355 (812)
.+..+. +..+..+...+...-+ ...+...+...|++++|..+|++.. -.......++. ..++++.|.+
T Consensus 1030 ~tAIka-D~~Rv~eyI~kLd~~d---~~eIA~Iai~lglyEEAf~IYkKa~-----~~~~A~~VLie---~i~nldrAiE 1097 (1630)
T 1xi4_A 1030 LTAIKA-DRTRVMEYINRLDNYD---APDIANIAISNELFEEAFAIFRKFD-----VNTSAVQVLIE---HIGNLDRAYE 1097 (1630)
T ss_pred HHHHHh-ChhhHHHHHHHhhhcc---HHHHHHHHHhCCCHHHHHHHHHHcC-----CHHHHHHHHHH---HHhhHHHHHH
Confidence 777766 4466666665555333 4557788899999999999999852 11122233333 5677888888
Q ss_pred HHhhHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCCceeeeHHHHHHHHHcCChhhHHHHHHHhcccCCCC
Q 040319 356 IHGFVMKFGLGSNDCIEAALLDMLTRCGRMADAEKMFYRWPTDRDDSIIWTSMICGYARSGKPEHAILLFHQSQSEATVV 435 (812)
Q Consensus 356 i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~ 435 (812)
+...+ .+..+|..+..++.+.|++++|.+.|.+.. |...|..++..+.+.|++++|++.|...++ ..
T Consensus 1098 ~Aerv------n~p~vWsqLAKAql~~G~~kEAIdsYiKAd----D~say~eVa~~~~~lGkyEEAIeyL~mArk---~~ 1164 (1630)
T 1xi4_A 1098 FAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKAD----DPSSYMEVVQAANTSGNWEELVKYLQMARK---KA 1164 (1630)
T ss_pred HHHhc------CCHHHHHHHHHHHHhCCCHHHHHHHHHhcC----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hc
Confidence 87754 457889999999999999999999997653 477888999999999999999999988776 33
Q ss_pred CChhhHHHHHHHhcCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHhhhcCCHHHHHHHHccCCCCChhHHHHHHHHHH
Q 040319 436 PDEIALTSVLGVCGTLGFHEMGKQIHSYALKTGFSSDLGVANSMVSMYFKCCNMSNAIKAFNKMPSHDIVSWNGLIAGHL 515 (812)
Q Consensus 436 p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~ 515 (812)
++....+.+.-+|++.+.++....+. + .++...+..+.+.|...|++++|..+|... ..|..+...|.
T Consensus 1165 ~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLv 1232 (1630)
T 1xi4_A 1165 RESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLV 1232 (1630)
T ss_pred ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-----hHHHHHHHHHH
Confidence 45444456888899998888655442 2 345566777999999999999999999986 58999999999
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCCcchHHHHHHHHhhcCChHH
Q 040319 516 LHRQGDEALAVWSSMEKASIKPDAITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLEE 595 (812)
Q Consensus 516 ~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~ 595 (812)
+.|++++|++.+++. -+..+|..+-.+|.. .|.+..|...... +..+++.+..++..|.+.|.+++
T Consensus 1233 kLge~q~AIEaarKA------~n~~aWkev~~acve--~~Ef~LA~~cgl~------Iiv~~deLeeli~yYe~~G~feE 1298 (1630)
T 1xi4_A 1233 HLGEYQAAVDGARKA------NSTRTWKEVCFACVD--GKEFRLAQMCGLH------IVVHADELEELINYYQDRGYFEE 1298 (1630)
T ss_pred HhCCHHHHHHHHHHh------CCHHHHHHHHHHHhh--hhHHHHHHHHHHh------hhcCHHHHHHHHHHHHHcCCHHH
Confidence 999999999999987 345889999999988 9999999887643 34567788899999999999999
Q ss_pred HHHHHHhCC-CCC-CHHHHHHHHHHHHh--cCCHHHHHHHHHHHHccCC-----CCCchHHHHHhhhhhCCCcchHHHHH
Q 040319 596 AEETINNMP-FQP-KVSVWRALLDSCRI--RLNTTIGKRVAKHILAMEP-----QDPATYILVSNLYSSSGRWHNSELVR 666 (812)
Q Consensus 596 A~~~~~~m~-~~p-~~~~~~~ll~~~~~--~~~~~~a~~~~~~~~~~~p-----~~~~~~~~l~~~y~~~g~~~~a~~~~ 666 (812)
|+.+++... ++| ....|.-|..++.+ -+++.++.+.+..-..+.| +++..|.-++-+|.+.|+|+.|....
T Consensus 1299 AI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm 1378 (1630)
T 1xi4_A 1299 LITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITM 1378 (1630)
T ss_pred HHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 999998854 555 34566556555554 4677777888888777766 67888999999999999999998643
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.81 E-value=4.1e-15 Score=172.12 Aligned_cols=520 Identities=12% Similarity=0.050 Sum_probs=359.4
Q ss_pred hHHhHhccCCchHHHHHHHHHHHhccCCCccchHHHHHHHHccCChhhHHHHHhcCCCCChhhHH-HHHHHHHhcCChhH
Q 040319 4 SLRLSVQCGEVSLAKAIHASLIKLLLEQDTRFGNPLISAYLKLGHVADAYKIFYGLSSPNVVSFT-SLISGLAKLGREEE 82 (812)
Q Consensus 4 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~-~li~~~~~~g~~~~ 82 (812)
|+..+-+.+++..-...++..+..| ..++.++|+|...|...++-. .+.+.+=+ -|. .++.-||...++.-
T Consensus 845 lv~~~ekrnrLkll~p~LE~~~~~g-~~~~~~hnalakiyid~n~np--e~fL~~n~-----~yd~~~vgkyce~rDp~l 916 (1630)
T 1xi4_A 845 LVAEVEKRNRLKLLLPWLEARIHEG-CEEPATHNALAKIYIDSNNNP--ERFLRENP-----YYDSRVVGKYCEKRDPHL 916 (1630)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHhccCCCH--HHHhhccC-----cccHHHHHHHHHhcCcch
Confidence 4455555666666666677777777 568889999999998765422 22222211 132 35667888888888
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHhhhcCCCHHHHHHHHhc--
Q 040319 83 AIELFFRMRSEGIVPNEHSFVAILTACIRLLELELGFQIHALIVKMGCVDSVFVTNALMGLYGKFSFCLDYLLKLFDE-- 160 (812)
Q Consensus 83 a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~~a~~~f~~-- 160 (812)
|.-.|++ |- -| .-|++.+.+.+-+..-- +.+++ ..|+..|+.++.- +-+.=+.+.+.
T Consensus 917 a~iay~~----g~-~d----~eli~vt~~n~l~k~~a---rylv~---r~d~~lW~~vl~~------~n~~RR~Lidqv~ 975 (1630)
T 1xi4_A 917 ACVAYER----GQ-CD----LELINVCNENSLFKSLS---RYLVR---RKDPELWGSVLLE------SNPYRRPLIDQVV 975 (1630)
T ss_pred HHHHhcc----cC-Cc----HHHHHHHhcchhHHHHH---HHHHH---hcCHHHHHHHhcC------CcHHHHHHHHHHH
Confidence 8877775 31 11 23555555555444321 12222 2455566655521 11122223322
Q ss_pred ---CC-CCCcchHHHHHHHHHcCCChhHHHHHHHHhHhcCCC--CCCcchHHHHHHHHhcCCChHHHHHHHHHHHHhCCC
Q 040319 161 ---LP-HKDTVSWNTVISSVVNEFEYEKAFELFRDMKRDNGF--TVDYFTISTLLTACTGCFVLMEGRAVHAHAIRIGLG 234 (812)
Q Consensus 161 ---~~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~--~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~ 234 (812)
.+ ..|+.--...+++|...|.+.+|+++++.. ...+- .-+...-+.++.+..+. +...+.++....-
T Consensus 976 a~aL~e~~~PeeVs~~vKaf~~aglp~EaieLLEKi-vl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd----- 1048 (1630)
T 1xi4_A 976 QTALSETQDPEEVSVTVKAFMTADLPNELIELLEKI-VLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLD----- 1048 (1630)
T ss_pred HhhcccccCHHHhHHHHHHHHhCCCHHHHHHHHHHH-HcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhh-----
Confidence 12 123344466789999999999999999998 33211 01112223344444444 5555555554443
Q ss_pred CchhHHHHHHHHHHhcCChHHHHHHHhcCCCCcchhHHHHHHHHHhhCChhHHHHHhccCCCCCcccHHHHHHHHHhCCC
Q 040319 235 ANLSVNNALIGFYTKCGRVKDVVALLERMPVMDIITLTEIIIAYMEFGYVDLAVEIFDKMPEKNSVSYNALLAGYCKNGK 314 (812)
Q Consensus 235 ~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~ 314 (812)
......+...+...|.+++|..+|++.... ....+.+ +-..+++++|.++.++.. +..+|..+..++.+.|+
T Consensus 1049 --~~d~~eIA~Iai~lglyEEAf~IYkKa~~~-~~A~~VL---ie~i~nldrAiE~Aervn--~p~vWsqLAKAql~~G~ 1120 (1630)
T 1xi4_A 1049 --NYDAPDIANIAISNELFEEAFAIFRKFDVN-TSAVQVL---IEHIGNLDRAYEFAERCN--EPAVWSQLAKAQLQKGM 1120 (1630)
T ss_pred --hccHHHHHHHHHhCCCHHHHHHHHHHcCCH-HHHHHHH---HHHHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCC
Confidence 122444677888899999999999997522 1222222 227889999999998774 46788899999999999
Q ss_pred hHHHHHHHHHHHHcCCCCCHhHHHHHHHHhccchhhhhHHHHHhhHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhc
Q 040319 315 AMEALGLFVKLLEEGLVLTEFTLTSVVNACGLIMEAKLSEQIHGFVMKFGLGSNDCIEAALLDMLTRCGRMADAEKMFYR 394 (812)
Q Consensus 315 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~ 394 (812)
+++|++.|.+. -|...|.-+..+|.+.|+++.+.+.+....+.. +++.+.+.++.+|++.+++++.....+
T Consensus 1121 ~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI~- 1191 (1630)
T 1xi4_A 1121 VKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFIN- 1191 (1630)
T ss_pred HHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHHh-
Confidence 99999999663 567788889999999999999999999888765 454555569999999999986544432
Q ss_pred CCCCCCceeeeHHHHHHHHHcCChhhHHHHHHHhcccCCCCCChhhHHHHHHHhcCccchHHHHHHHHHHHHhCCCCchh
Q 040319 395 WPTDRDDSIIWTSMICGYARSGKPEHAILLFHQSQSEATVVPDEIALTSVLGVCGTLGFHEMGKQIHSYALKTGFSSDLG 474 (812)
Q Consensus 395 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~ 474 (812)
..+ ...|..+...|...|++++|..+|... ..|..+...+.+.|+++.|.+..+.. .+..
T Consensus 1192 ---~~n-~ad~~~iGd~le~eg~YeeA~~~Y~kA----------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~ 1251 (1630)
T 1xi4_A 1192 ---GPN-NAHIQQVGDRCYDEKMYDAAKLLYNNV----------SNFGRLASTLVHLGEYQAAVDGARKA------NSTR 1251 (1630)
T ss_pred ---CCC-HHHHHHHHHHHHhcCCHHHHHHHHHhh----------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHH
Confidence 223 566777888999999999999999874 37889999999999999999988776 4668
Q ss_pred HHHHHHHHhhhcCCHHHHHHHHccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcCCC
Q 040319 475 VANSMVSMYFKCCNMSNAIKAFNKMPSHDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDA-ITFVLIISAYRYTN 553 (812)
Q Consensus 475 ~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~~ 553 (812)
+|..+..++...|++..|...... ...+...+..++..|...|.+++|+.+++..+. +.|.. ..|.-+..++++.+
T Consensus 1252 aWkev~~acve~~Ef~LA~~cgl~-Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~--LeraH~gmftELaiLyaKy~ 1328 (1630)
T 1xi4_A 1252 TWKEVCFACVDGKEFRLAQMCGLH-IVVHADELEELINYYQDRGYFEELITMLEAALG--LERAHMGMFTELAILYSKFK 1328 (1630)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHh-hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc--cChhHhHHHHHHHHHHHhCC
Confidence 888888889999999999988765 334555677899999999999999999988876 55555 34544444444434
Q ss_pred CchHHHHHHHHHHhhhhcCccC------CcchHHHHHHHHhhcCChHHHHHHHHh
Q 040319 554 LNLVDSCRKLFLSMKTIYNIEP------TSEHYASLVSVLGYWGFLEEAEETINN 602 (812)
Q Consensus 554 ~g~~~~a~~~~~~m~~~~~~~p------~~~~y~~li~~l~~~g~~~~A~~~~~~ 602 (812)
.+++.++.++|.+-. +++| +..+|.-++.+|.+.|+++.|...+-+
T Consensus 1329 peklmEhlk~f~~ri---ni~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~ 1380 (1630)
T 1xi4_A 1329 PQKMREHLELFWSRV---NIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMN 1380 (1630)
T ss_pred HHHHHHHHHHHHHhc---ccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHh
Confidence 888888888887543 3444 467899999999999999999865544
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.77 E-value=6.7e-17 Score=171.58 Aligned_cols=310 Identities=11% Similarity=-0.023 Sum_probs=208.4
Q ss_pred cccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHhccchhhhhHHHHHhhHHHhcCCCchhHHHHHHHH
Q 040319 299 SVSYNALLAGYCKNGKAMEALGLFVKLLEEGLVLTEFTLTSVVNACGLIMEAKLSEQIHGFVMKFGLGSNDCIEAALLDM 378 (812)
Q Consensus 299 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~ 378 (812)
+..|..+...+...|++++|+..|+++.+... .+..++ ..+...
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~-----------------------------------~~~a~~ 46 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDP-DNYIAY-----------------------------------YRRATV 46 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHH-----------------------------------HHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-ccHHHH-----------------------------------HHHHHH
Confidence 34566777788888888888888888877431 122333 334444
Q ss_pred HHhcCCHHHHHHHHhcCCC-CCCceeeeHHHHHHHHHcCChhhHHHHHHHhcccCCCCC---Chh-hHHHH---------
Q 040319 379 LTRCGRMADAEKMFYRWPT-DRDDSIIWTSMICGYARSGKPEHAILLFHQSQSEATVVP---DEI-ALTSV--------- 444 (812)
Q Consensus 379 y~~~g~~~~A~~~f~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p---~~~-t~~~l--------- 444 (812)
|...|++++|...|+++.. .+.+...|..+...|...|++++|+..|++... ..| +.. .+..+
T Consensus 47 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~ 123 (359)
T 3ieg_A 47 FLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLK---SNPSEQEEKEAESQLVKADEMQRL 123 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHHHHHHh---cCCcccChHHHHHHHHHHHHHHHH
Confidence 5555555555555544331 122344555555666666666666666666554 334 222 12111
Q ss_pred ---HHHhcCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHhhhcCCHHHHHHHHccCCC---CChhHHHHHHHHHHhcC
Q 040319 445 ---LGVCGTLGFHEMGKQIHSYALKTGFSSDLGVANSMVSMYFKCCNMSNAIKAFNKMPS---HDIVSWNGLIAGHLLHR 518 (812)
Q Consensus 445 ---l~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g 518 (812)
...+...|+++.|...+..+.+.. +.+..++..+...|.+.|++++|...|+++.+ .+...|..+...|...|
T Consensus 124 ~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 202 (359)
T 3ieg_A 124 RSQALDAFDGADYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLG 202 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 345566677777777777776654 34567778888888889999999888887654 56678888888899999
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHH-HH------------HHHHHhcCCCCchHHHHHHHHHHhhhhcCccCCc-----chH
Q 040319 519 QGDEALAVWSSMEKASIKPDAIT-FV------------LIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTS-----EHY 580 (812)
Q Consensus 519 ~~~~A~~l~~~m~~~g~~pd~~t-~~------------~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~-----~~y 580 (812)
++++|+..|++..+ ..|+... +. .+...+.. .|++++|...|+.+.+. .|+. ..|
T Consensus 203 ~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~--~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~ 275 (359)
T 3ieg_A 203 DHELSLSEVRECLK--LDQDHKRCFAHYKQVKKLNKLIESAEELIR--DGRYTDATSKYESVMKT---EPSVAEYTVRSK 275 (359)
T ss_dssp CHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHH---CCSSHHHHHHHH
T ss_pred CHHHHHHHHHHHHh--hCccchHHHHHHHHHHHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHhc---CCCchHHHHHHH
Confidence 99999999999888 5666533 21 12334556 78888888888887763 3442 235
Q ss_pred HHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhh
Q 040319 581 ASLVSVLGYWGFLEEAEETINNMP-FQP-KVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSS 655 (812)
Q Consensus 581 ~~li~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~ 655 (812)
..+..++.+.|++++|.+.+++.. ..| +..+|..+...+...|+.+.|...++++++++|+++..+..+..++..
T Consensus 276 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 276 ERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRL 352 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 567788888888888888888754 344 677888888888888888888888888888888888777777666543
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.76 E-value=1.8e-17 Score=172.98 Aligned_cols=322 Identities=15% Similarity=0.082 Sum_probs=160.9
Q ss_pred hCChhHHHHHhccCCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHhccchhhhhHHHHHhhH
Q 040319 281 FGYVDLAVEIFDKMPEKNSVSYNALLAGYCKNGKAMEALGLFVKLLEEGLVLTEFTLTSVVNACGLIMEAKLSEQIHGFV 360 (812)
Q Consensus 281 ~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~ 360 (812)
.|++++|.+.++++..|+ +|..|..++.+.|++++|++.|.+ .+|..+|..++.++...|+++++..++...
T Consensus 16 ~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~yl~~a 87 (449)
T 1b89_A 16 IGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQMA 87 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 344555555666664443 677777777777777777777754 256667777777777777777777766666
Q ss_pred HHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCCceeeeHHHHHHHHHcCChhhHHHHHHHhcccCCCCCChhh
Q 040319 361 MKFGLGSNDCIEAALLDMLTRCGRMADAEKMFYRWPTDRDDSIIWTSMICGYARSGKPEHAILLFHQSQSEATVVPDEIA 440 (812)
Q Consensus 361 ~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t 440 (812)
++. .+++.+.+.|+.+|.++|+++++.++|+. |+..+|+.+...|...|++++|...|..+ ..
T Consensus 88 rk~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~-----pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a----------~n 150 (449)
T 1b89_A 88 RKK--ARESYVETELIFALAKTNRLAELEEFING-----PNNAHIQQVGDRCYDEKMYDAAKLLYNNV----------SN 150 (449)
T ss_dssp -----------------------CHHHHTTTTTC-----C----------------CTTTHHHHHHHT----------TC
T ss_pred HHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC-----CcHHHHHHHHHHHHHcCCHHHHHHHHHHh----------hh
Confidence 663 44577888899999999999998888753 34679999999999999999999999876 36
Q ss_pred HHHHHHHhcCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHhhhcCCHHHHHHHHccCCCCChhHHHHHHHHHHhcCCh
Q 040319 441 LTSVLGVCGTLGFHEMGKQIHSYALKTGFSSDLGVANSMVSMYFKCCNMSNAIKAFNKMPSHDIVSWNGLIAGHLLHRQG 520 (812)
Q Consensus 441 ~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~ 520 (812)
|..+..++.++|+++.|.+.+..+ .++.+|..++.+|...|+++.|......+. .++.-...++..|.+.|++
T Consensus 151 ~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~ 223 (449)
T 1b89_A 151 FGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYF 223 (449)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCH
Confidence 889999999999999999998877 378999999999999999999988877665 4444455799999999999
Q ss_pred HHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccC------CcchHHHHHHHHhhcCCh
Q 040319 521 DEALAVWSSMEKASIKPDA-ITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEP------TSEHYASLVSVLGYWGFL 593 (812)
Q Consensus 521 ~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p------~~~~y~~li~~l~~~g~~ 593 (812)
++|+.+++..+. ..|-. ..|+.+--++++-+.+.+.+..+.|.+- -+++| +..+|.-++.+|..-|++
T Consensus 224 eEai~lLe~aL~--le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~---ini~k~~~~~~~~~~w~e~~~ly~~~~e~ 298 (449)
T 1b89_A 224 EELITMLEAALG--LERAHMGMFTELAILYSKFKPQKMREHLELFWSR---VNIPKVLRAAEQAHLWAELVFLYDKYEEY 298 (449)
T ss_dssp HHHHHHHHHHTT--STTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTT---SCHHHHHHHHHTTTCHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhC--CcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH---hcCcHHHHHHHHHHHHHHHHHHHHhhchH
Confidence 999999999886 44544 5555555555554478888888877643 34666 588999999999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCC
Q 040319 594 EEAEETINNMPFQPKVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQ 641 (812)
Q Consensus 594 ~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~ 641 (812)
+.|...+-+-+ |++.--..+.....+-.|.|.--++..--++..|.
T Consensus 299 d~A~~tm~~h~--~~a~~~~~f~~~~~kv~n~elyYkai~fyl~~~p~ 344 (449)
T 1b89_A 299 DNAIITMMNHP--TDAWKEGQFKDIITKVANVELYYRAIQFYLEFKPL 344 (449)
T ss_dssp HHHHHHHHHST--TTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHHCGG
T ss_pred HHHHHHHHhCC--hhhhhhHHHHHHHhchhHHHHHHHHHHHHHhcCHH
Confidence 99988766643 23222333444555666666665555555555553
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.76 E-value=3.5e-17 Score=170.82 Aligned_cols=287 Identities=12% Similarity=0.083 Sum_probs=101.4
Q ss_pred ccCChhhHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHH
Q 040319 45 KLGHVADAYKIFYGLSSPNVVSFTSLISGLAKLGREEEAIELFFRMRSEGIVPNEHSFVAILTACIRLLELELGFQIHAL 124 (812)
Q Consensus 45 ~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 124 (812)
+.|++++|.+.+++++.|+ +|..|..++.+.|++++|++.|.+ .+|..+|..++.++...|++++|...+..
T Consensus 15 ~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 7788999999999997775 899999999999999999999975 36888999999999999999999998888
Q ss_pred HHHhCCCCchHHHHHHHHHhhhcCCCHHHHHHHHhcCCCCCcchHHHHHHHHHcCCChhHHHHHHHHhHhcCCCCCCcch
Q 040319 125 IVKMGCVDSVFVTNALMGLYGKFSFCLDYLLKLFDELPHKDTVSWNTVISSVVNEFEYEKAFELFRDMKRDNGFTVDYFT 204 (812)
Q Consensus 125 ~~~~g~~~~~~~~~~li~~y~~~g~~~~~a~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t 204 (812)
.++. .+++.+.+.|+.+|.++| +++++.++++. |+..+|+.+...|...|.+++|...|..+ ..
T Consensus 87 ark~--~~~~~i~~~Li~~Y~Klg-~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a----------~n 150 (449)
T 1b89_A 87 ARKK--ARESYVETELIFALAKTN-RLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV----------SN 150 (449)
T ss_dssp -------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT----------TC
T ss_pred HHHh--CccchhHHHHHHHHHHhC-CHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh----------hh
Confidence 8774 566888999999999999 99999988864 77789999999999999999999999977 25
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCcchhHHHHHHHHHhhCCh
Q 040319 205 ISTLLTACTGCFVLMEGRAVHAHAIRIGLGANLSVNNALIGFYTKCGRVKDVVALLERMPVMDIITLTEIIIAYMEFGYV 284 (812)
Q Consensus 205 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~li~~~~~~g~~ 284 (812)
|..+..++.+.|++++|.+.+..+ .++.+|..++.+|...|+++.|......+
T Consensus 151 ~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L--------------------- 203 (449)
T 1b89_A 151 FGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI--------------------- 203 (449)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT---------------------
T ss_pred HHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH---------------------
Confidence 677777777777777776666655 25666666666666666666666543332
Q ss_pred hHHHHHhccCCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHcC-CCCCHhHHHHHHHHhccchhhhhHHHHHhhHHHh
Q 040319 285 DLAVEIFDKMPEKNSVSYNALLAGYCKNGKAMEALGLFVKLLEEG-LVLTEFTLTSVVNACGLIMEAKLSEQIHGFVMKF 363 (812)
Q Consensus 285 ~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~ 363 (812)
. .++.....++..|.+.|++++|+.+++..+... -.-..+|...++-+--+.+.+.+..+.|.. +.
T Consensus 204 ----------~-~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~--~i 270 (449)
T 1b89_A 204 ----------V-VHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWS--RV 270 (449)
T ss_dssp ----------T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHST--TS
T ss_pred ----------H-hCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--Hh
Confidence 2 222222335555555555555555555554322 011112222222222333333333333321 11
Q ss_pred cCCC------chhHHHHHHHHHHhcCCHHHHHHHHhcC
Q 040319 364 GLGS------NDCIEAALLDMLTRCGRMADAEKMFYRW 395 (812)
Q Consensus 364 g~~~------~~~~~~~Li~~y~~~g~~~~A~~~f~~~ 395 (812)
+++| +...|.-++-.|.+.++++.|....-+-
T Consensus 271 ni~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h 308 (449)
T 1b89_A 271 NIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNH 308 (449)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhC
Confidence 1111 3556777888888888888887665443
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.75 E-value=2.4e-16 Score=167.32 Aligned_cols=293 Identities=15% Similarity=0.082 Sum_probs=241.2
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhcCCCC-CCceeeeHHHHHHHHHcCChhhHHHHHHHhcccCCCCC-ChhhHHHHHH
Q 040319 369 DCIEAALLDMLTRCGRMADAEKMFYRWPTD-RDDSIIWTSMICGYARSGKPEHAILLFHQSQSEATVVP-DEIALTSVLG 446 (812)
Q Consensus 369 ~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p-~~~t~~~ll~ 446 (812)
+..+..+...|.+.|++++|...|+++... +++..+|..+...+...|++++|+..|+++.. ..| +...+..+..
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~~~~l~~ 79 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIA---LKMDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHH---hCCCcchHHHHHHH
Confidence 445667778889999999999999886422 44577899999999999999999999999987 455 4456777888
Q ss_pred HhcCccchHHHHHHHHHHHHhCCC--CchhHHHHH------------HHHhhhcCCHHHHHHHHccCCC---CChhHHHH
Q 040319 447 VCGTLGFHEMGKQIHSYALKTGFS--SDLGVANSM------------VSMYFKCCNMSNAIKAFNKMPS---HDIVSWNG 509 (812)
Q Consensus 447 a~~~~~~~~~a~~~~~~~~~~g~~--~~~~~~~~L------------i~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~ 509 (812)
.+...|+++.|...+..+.+.... .+...+..+ ...|...|++++|...|+++.+ .+...|..
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 159 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELREL 159 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHH
Confidence 899999999999999999875420 244455444 5889999999999999998754 56788999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCC-cchHH------
Q 040319 510 LIAGHLLHRQGDEALAVWSSMEKASIKPD-AITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPT-SEHYA------ 581 (812)
Q Consensus 510 li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~------ 581 (812)
+...|...|++++|+..++++.+ ..|+ ..++..+...+.. .|++++|...|+...+ ..|+ ...+.
T Consensus 160 ~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~la~~~~~--~~~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~~ 232 (359)
T 3ieg_A 160 RAECFIKEGEPRKAISDLKAASK--LKSDNTEAFYKISTLYYQ--LGDHELSLSEVRECLK---LDQDHKRCFAHYKQVK 232 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHT--TCSCCHHHHHHHHHHHHH--HTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHh---hCccchHHHHHHHHHH
Confidence 99999999999999999999998 5565 4677778888888 9999999999999886 3344 22222
Q ss_pred ------HHHHHHhhcCChHHHHHHHHhCC-CCCC-HH----HHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHH
Q 040319 582 ------SLVSVLGYWGFLEEAEETINNMP-FQPK-VS----VWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILV 649 (812)
Q Consensus 582 ------~li~~l~~~g~~~~A~~~~~~m~-~~p~-~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 649 (812)
.++..+.+.|++++|.+.++++. ..|+ .. .+..+...+...|+.+.|...++++++++|+++..+..+
T Consensus 233 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 312 (359)
T 3ieg_A 233 KLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDR 312 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHH
Confidence 33777999999999999999865 3454 32 344566788999999999999999999999999999999
Q ss_pred HhhhhhCCCcchHHHHHHHHHh
Q 040319 650 SNLYSSSGRWHNSELVREDMRE 671 (812)
Q Consensus 650 ~~~y~~~g~~~~a~~~~~~m~~ 671 (812)
+.+|...|++++|.+.+++..+
T Consensus 313 ~~~~~~~g~~~~A~~~~~~a~~ 334 (359)
T 3ieg_A 313 AEAYLIEEMYDEAIQDYEAAQE 334 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHHHHh
Confidence 9999999999999999999864
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=2.5e-16 Score=165.04 Aligned_cols=287 Identities=12% Similarity=-0.022 Sum_probs=219.8
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCC-CCceeeeHHHHHHHHHcCChhhHHHHHHHhcccCCCCCC-hhhHHH
Q 040319 366 GSNDCIEAALLDMLTRCGRMADAEKMFYRWPTD-RDDSIIWTSMICGYARSGKPEHAILLFHQSQSEATVVPD-EIALTS 443 (812)
Q Consensus 366 ~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~-~~t~~~ 443 (812)
+.+..+...+...+...|++++|.++|+++... +.+...+..++..+...|++++|+..+.++.. ..|+ ...+..
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~~~~ 95 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVD---LYPSNPVSWFA 95 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHH---HCTTSTHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHH---hCcCCHHHHHH
Confidence 445566667777788888888888888776422 33355666677788888888888888888876 3443 345666
Q ss_pred HHHHhcCcc-chHHHHHHHHHHHHhCCCCchhHHHHHHHHhhhcCCHHHHHHHHccCCC---CChhHHHHHHHHHHhcCC
Q 040319 444 VLGVCGTLG-FHEMGKQIHSYALKTGFSSDLGVANSMVSMYFKCCNMSNAIKAFNKMPS---HDIVSWNGLIAGHLLHRQ 519 (812)
Q Consensus 444 ll~a~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~ 519 (812)
+...+...| .++.|...+..+.+.. +.+...+..+...|...|++++|...|+++.+ .+...|..+...|...|+
T Consensus 96 l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~ 174 (330)
T 3hym_B 96 VGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNN 174 (330)
T ss_dssp HHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhh
Confidence 667777778 7888888888887654 33567788888899999999999998887654 345777788888999999
Q ss_pred hHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcC-------ccCCcchHHHHHHHHhhcC
Q 040319 520 GDEALAVWSSMEKASIKPDA-ITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYN-------IEPTSEHYASLVSVLGYWG 591 (812)
Q Consensus 520 ~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~-------~~p~~~~y~~li~~l~~~g 591 (812)
+++|++.|++..+ ..|+. ..+..+...+.. .|++++|..+|+.+.+... .......|..+..++.+.|
T Consensus 175 ~~~A~~~~~~al~--~~~~~~~~~~~l~~~~~~--~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g 250 (330)
T 3hym_B 175 SKLAERFFSQALS--IAPEDPFVMHEVGVVAFQ--NGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLK 250 (330)
T ss_dssp HHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHH--hCCCChHHHHHHHHHHHH--cccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhc
Confidence 9999999999988 55654 667777777878 8999999999988776321 1333678889999999999
Q ss_pred ChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhh-hhCCCcc
Q 040319 592 FLEEAEETINNMP-FQP-KVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLY-SSSGRWH 660 (812)
Q Consensus 592 ~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y-~~~g~~~ 660 (812)
++++|.+.+++.. ..| +..+|..+...+...|+.+.|...++++++++|+++..+..++.+| ...|+.+
T Consensus 251 ~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 251 KYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp CHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC--
T ss_pred CHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCchh
Confidence 9999999988864 344 5678888888899999999999999999999999999999999888 4555543
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.69 E-value=2.3e-14 Score=160.98 Aligned_cols=410 Identities=10% Similarity=-0.022 Sum_probs=249.2
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHHhcCCC---CcchhHHHHHHHHHhhCChhHHHHHhccCCC--CCcccHHHHHH-
Q 040319 234 GANLSVNNALIGFYTKCGRVKDVVALLERMPV---MDIITLTEIIIAYMEFGYVDLAVEIFDKMPE--KNSVSYNALLA- 307 (812)
Q Consensus 234 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~d~~~~~~li~- 307 (812)
+.+...|..++. +.+.|+++.|..+|+++.. .+...|...+..+.+.|++++|..+|++... |++..|...+.
T Consensus 10 P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~~~ 88 (530)
T 2ooe_A 10 PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSY 88 (530)
T ss_dssp TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHH
Confidence 335556666665 3556666666666666532 2334566666666666666666667766554 45555555553
Q ss_pred HHHhCCChHHHHH----HHHHHHHc-CCCCCH-hHHHHHHHHhc---------cchhhhhHHHHHhhHHHhcCCCchhHH
Q 040319 308 GYCKNGKAMEALG----LFVKLLEE-GLVLTE-FTLTSVVNACG---------LIMEAKLSEQIHGFVMKFGLGSNDCIE 372 (812)
Q Consensus 308 ~~~~~g~~~~A~~----l~~~m~~~-g~~p~~-~t~~~ll~a~~---------~~~~~~~a~~i~~~~~~~g~~~~~~~~ 372 (812)
.....|+.++|.+ +|++.+.. |..|+. ..+...+.... ..++.+.+..++..+++........++
T Consensus 89 ~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~ 168 (530)
T 2ooe_A 89 VRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLW 168 (530)
T ss_dssp HHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHH
T ss_pred HHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHH
Confidence 2234566655544 55555442 444432 22333332221 145555566666555552111111122
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcCCCCCCceeeeHHHHHHHHHcCChhhHHHHHHH------hcccC--CCCCCh------
Q 040319 373 AALLDMLTRCGRMADAEKMFYRWPTDRDDSIIWTSMICGYARSGKPEHAILLFHQ------SQSEA--TVVPDE------ 438 (812)
Q Consensus 373 ~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~------m~~~~--g~~p~~------ 438 (812)
..........|. ..+..++. .+.+++.+|..++.+ ..+.. .+.|+.
T Consensus 169 ~~~~~~e~~~~~-~~~~~~l~-------------------~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~ 228 (530)
T 2ooe_A 169 RDYNKYEEGINI-HLAKKMIE-------------------DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQ 228 (530)
T ss_dssp HHHHHHHHHHCH-HHHHHHHH-------------------TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHH
T ss_pred HHHHHHHHhhch-hHHHHHHH-------------------HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHH
Confidence 211111100000 00111110 012345556555554 22100 123331
Q ss_pred --hhHHHHHHHhcC----ccch----HHHHHHHHHHHHhCCCCchhHHHHHHHHhhh-------cCCHH-------HHHH
Q 040319 439 --IALTSVLGVCGT----LGFH----EMGKQIHSYALKTGFSSDLGVANSMVSMYFK-------CCNMS-------NAIK 494 (812)
Q Consensus 439 --~t~~~ll~a~~~----~~~~----~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k-------~g~~~-------~A~~ 494 (812)
..|...+..... .++. +.+..+++.+++.. +.+..+|..++..+.+ .|+++ +|..
T Consensus 229 ~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~ 307 (530)
T 2ooe_A 229 QVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAAN 307 (530)
T ss_dssp HHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHH
Confidence 233333322111 1222 35666777777653 4467788888888875 68887 8999
Q ss_pred HHccCCC---C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHhcCCCCchHHHHHHHHHHhh
Q 040319 495 AFNKMPS---H-DIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDA--ITFVLIISAYRYTNLNLVDSCRKLFLSMK 568 (812)
Q Consensus 495 ~f~~~~~---~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~--~t~~~ll~a~~~~~~g~~~~a~~~~~~m~ 568 (812)
+|++..+ | +...|..++..+.+.|++++|.++|+++++ +.|+. ..|......+.+ .|++++|.++|+...
T Consensus 308 ~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~--~~~~~~A~~~~~~Al 383 (530)
T 2ooe_A 308 IYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARR--AEGIKSGRMIFKKAR 383 (530)
T ss_dssp HHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--SSSSCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhC--ccccCchHHHHHHHHHHHH--hcCHHHHHHHHHHHH
Confidence 9987653 4 478899999999999999999999999999 67764 467777777777 899999999999988
Q ss_pred hhcCccCC-cchHHHHHHH-HhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCc
Q 040319 569 TIYNIEPT-SEHYASLVSV-LGYWGFLEEAEETINNMP-FQP-KVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPA 644 (812)
Q Consensus 569 ~~~~~~p~-~~~y~~li~~-l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 644 (812)
+. .|. ...|...+.+ +...|+.++|..+|++.. ..| +..+|..++......|+.+.|+.+++++++..|.++.
T Consensus 384 ~~---~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~ 460 (530)
T 2ooe_A 384 ED---ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPE 460 (530)
T ss_dssp TC---TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGG
T ss_pred hc---cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHH
Confidence 62 333 3333332222 336899999999998754 445 6789999999999999999999999999998877665
Q ss_pred ----hHHHHHhhhhhCCCcchHHHHHHHHHhC
Q 040319 645 ----TYILVSNLYSSSGRWHNSELVREDMREK 672 (812)
Q Consensus 645 ----~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 672 (812)
.+...+......|+.+++..+.+++.+.
T Consensus 461 ~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 461 KSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp GCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 6777788888899999999998888653
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.68 E-value=7e-16 Score=164.56 Aligned_cols=278 Identities=11% Similarity=-0.009 Sum_probs=218.1
Q ss_pred HHhcCCHHHHHH-HHhcCCCCCC-----ceeeeHHHHHHHHHcCChhhHHHHHHHhcccCCCCC-ChhhHHHHHHHhcCc
Q 040319 379 LTRCGRMADAEK-MFYRWPTDRD-----DSIIWTSMICGYARSGKPEHAILLFHQSQSEATVVP-DEIALTSVLGVCGTL 451 (812)
Q Consensus 379 y~~~g~~~~A~~-~f~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p-~~~t~~~ll~a~~~~ 451 (812)
|.-.|++++|.. .|++.....+ +...|..+...+.+.|++++|+..|+++.. ..| +..++..+...+...
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~ 111 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQ---QDPKHMEAWQYLGTTQAEN 111 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHH---SCTTCHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHC
Confidence 444577888887 7775432211 255678888889999999999999999887 334 445677777888889
Q ss_pred cchHHHHHHHHHHHHhCCCCchhHHHHHHHHhhhcCCHHHHHHHHccCCC--C-ChhHHHH---------------HHHH
Q 040319 452 GFHEMGKQIHSYALKTGFSSDLGVANSMVSMYFKCCNMSNAIKAFNKMPS--H-DIVSWNG---------------LIAG 513 (812)
Q Consensus 452 ~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~--~-~~~~~~~---------------li~~ 513 (812)
|+++.|...+..+.+.. +.+..++..+...|.+.|++++|...|+++.. | +...+.. .+..
T Consensus 112 g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (368)
T 1fch_A 112 EQELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGS 190 (368)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHH
T ss_pred cCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHH
Confidence 99999999999988865 44678888999999999999999999987654 2 2222221 1333
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCC-cchHHHHHHHHhh
Q 040319 514 HLLHRQGDEALAVWSSMEKASIKPD---AITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPT-SEHYASLVSVLGY 589 (812)
Q Consensus 514 ~~~~g~~~~A~~l~~~m~~~g~~pd---~~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~ 589 (812)
+...|++++|+..|+++.+ ..|+ ..++..+...+.. .|++++|...|+.+.+. .|+ ...|..++.++.+
T Consensus 191 ~~~~~~~~~A~~~~~~a~~--~~p~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~al~~---~~~~~~~~~~l~~~~~~ 263 (368)
T 1fch_A 191 LLSDSLFLEVKELFLAAVR--LDPTSIDPDVQCGLGVLFNL--SGEYDKAVDCFTAALSV---RPNDYLLWNKLGATLAN 263 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHH--HSTTSCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHH
T ss_pred HhhcccHHHHHHHHHHHHH--hCcCcccHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHh---CcCCHHHHHHHHHHHHH
Confidence 4489999999999999998 5666 5778888888888 99999999999998862 454 7889999999999
Q ss_pred cCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCC-----------CchHHHHHhhhhhC
Q 040319 590 WGFLEEAEETINNMP-FQP-KVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQD-----------PATYILVSNLYSSS 656 (812)
Q Consensus 590 ~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~-----------~~~~~~l~~~y~~~ 656 (812)
.|++++|++.++++. ..| +..+|..+...+...|+.+.|...+++++++.|++ +..+..++.+|...
T Consensus 264 ~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 343 (368)
T 1fch_A 264 GNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSML 343 (368)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHh
Confidence 999999999999865 445 67899999999999999999999999999999987 78899999999999
Q ss_pred CCcchHHHHHH
Q 040319 657 GRWHNSELVRE 667 (812)
Q Consensus 657 g~~~~a~~~~~ 667 (812)
|++++|..+.+
T Consensus 344 g~~~~A~~~~~ 354 (368)
T 1fch_A 344 GQSDAYGAADA 354 (368)
T ss_dssp TCGGGHHHHHT
T ss_pred CChHhHHHhHH
Confidence 99999998876
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.9e-15 Score=158.32 Aligned_cols=260 Identities=13% Similarity=0.053 Sum_probs=224.0
Q ss_pred CceeeeHHHHHHHHHcCChhhHHHHHHHhcccCCCCCCh-hhHHHHHHHhcCccchHHHHHHHHHHHHhCCCCchhHHHH
Q 040319 400 DDSIIWTSMICGYARSGKPEHAILLFHQSQSEATVVPDE-IALTSVLGVCGTLGFHEMGKQIHSYALKTGFSSDLGVANS 478 (812)
Q Consensus 400 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~-~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 478 (812)
++...+..+...+...|++++|+++|+++.. ..|+. ..+..+...+...|+++.|..++..+.+.. +.+..++..
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~---~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 95 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVME---KDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFA 95 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHH
Confidence 4466778888899999999999999999987 33443 355567778889999999999999999864 346778899
Q ss_pred HHHHhhhcC-CHHHHHHHHccCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhcCCC
Q 040319 479 MVSMYFKCC-NMSNAIKAFNKMPS---HDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPD-AITFVLIISAYRYTN 553 (812)
Q Consensus 479 Li~~y~k~g-~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~~ 553 (812)
+...|...| ++++|...|++..+ .+...|..+...|...|++++|++.|+++.+ ..|+ ..++..+...+..
T Consensus 96 l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~l~~~~~~-- 171 (330)
T 3hym_B 96 VGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQ--LMKGCHLPMLYIGLEYGL-- 171 (330)
T ss_dssp HHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HTTTCSHHHHHHHHHHHH--
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hccccHHHHHHHHHHHHH--
Confidence 999999999 99999999998654 4577899999999999999999999999998 5565 3667777778888
Q ss_pred CchHHHHHHHHHHhhhhcCccC-CcchHHHHHHHHhhcCChHHHHHHHHhCC-C----------CCCHHHHHHHHHHHHh
Q 040319 554 LNLVDSCRKLFLSMKTIYNIEP-TSEHYASLVSVLGYWGFLEEAEETINNMP-F----------QPKVSVWRALLDSCRI 621 (812)
Q Consensus 554 ~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~li~~l~~~g~~~~A~~~~~~m~-~----------~p~~~~~~~ll~~~~~ 621 (812)
.|++++|.++|+.+.+ ..| +...+..++.++.+.|++++|.+.+++.. . +.+..+|..+...+..
T Consensus 172 ~~~~~~A~~~~~~al~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~ 248 (330)
T 3hym_B 172 TNNSKLAERFFSQALS---IAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRK 248 (330)
T ss_dssp TTCHHHHHHHHHHHHT---TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHH
Confidence 9999999999999986 334 47889999999999999999999998753 1 3346789999999999
Q ss_pred cCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCCcchHHHHHHHHH
Q 040319 622 RLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWHNSELVREDMR 670 (812)
Q Consensus 622 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 670 (812)
.|+.+.|...+++++++.|+++..+..++.+|...|++++|.+.+++..
T Consensus 249 ~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 297 (330)
T 3hym_B 249 LKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTAL 297 (330)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTT
T ss_pred hcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998763
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.68 E-value=2.3e-14 Score=159.18 Aligned_cols=367 Identities=11% Similarity=-0.010 Sum_probs=249.6
Q ss_pred CchhHHHHHHHHHHh----cCChHHHHHHHhcCC-CCcchhHHHHHHHHHh----hCChhHHHHHhccCCC-CCcccHHH
Q 040319 235 ANLSVNNALIGFYTK----CGRVKDVVALLERMP-VMDIITLTEIIIAYME----FGYVDLAVEIFDKMPE-KNSVSYNA 304 (812)
Q Consensus 235 ~~~~~~~~li~~~~~----~g~~~~A~~l~~~~~-~~~~~~~~~li~~~~~----~g~~~~A~~~f~~m~~-~d~~~~~~ 304 (812)
.+......|..+|.. .+++++|...|++.. ..+...+..|...|.. .++.++|.+.|++..+ .+...+..
T Consensus 37 g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~ 116 (490)
T 2xm6_A 37 GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQAQQN 116 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 356666667777776 677777777666542 2234444445555554 4555555555554432 23334444
Q ss_pred HHHHHHh----CCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHhccchhhhhHHHHHhhHHHhcCCCchhHHHHHHHHHH
Q 040319 305 LLAGYCK----NGKAMEALGLFVKLLEEGLVLTEFTLTSVVNACGLIMEAKLSEQIHGFVMKFGLGSNDCIEAALLDMLT 380 (812)
Q Consensus 305 li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~ 380 (812)
|...|.. .+++++|+..|++..+ .| +......|..+|.
T Consensus 117 Lg~~y~~g~g~~~~~~~A~~~~~~a~~-----------------------------------~~---~~~a~~~Lg~~y~ 158 (490)
T 2xm6_A 117 LGVMYHEGNGVKVDKAESVKWFRLAAE-----------------------------------QG---RDSGQQSMGDAYF 158 (490)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHH-----------------------------------TT---CHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHH-----------------------------------CC---CHHHHHHHHHHHH
Confidence 4444444 4445555555554444 33 3344445555555
Q ss_pred h----cCCHHHHHHHHhcCCCCCCceeeeHHHHHHHHH----cCChhhHHHHHHHhcccCCCCCChhhHHHHHHHhcC--
Q 040319 381 R----CGRMADAEKMFYRWPTDRDDSIIWTSMICGYAR----SGKPEHAILLFHQSQSEATVVPDEIALTSVLGVCGT-- 450 (812)
Q Consensus 381 ~----~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~a~~~-- 450 (812)
. .++.++|.+.|++.. ...+..++..+...|.. .+++++|++.|++..+ .+ +...+..+-..+..
T Consensus 159 ~g~g~~~d~~~A~~~~~~a~-~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~-~~---~~~a~~~lg~~y~~g~ 233 (490)
T 2xm6_A 159 EGDGVTRDYVMAREWYSKAA-EQGNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSAT-SG---DELGQLHLADMYYFGI 233 (490)
T ss_dssp HTSSSCCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHHHTS
T ss_pred cCCCCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHH-CC---CHHHHHHHHHHHHcCC
Confidence 5 567777777776655 33446666666666766 6777777777777665 33 33344444444432
Q ss_pred --ccchHHHHHHHHHHHHhCCCCchhHHHHHHHHhhh----cCCHHHHHHHHccCCC-CChhHHHHHHHHHHhc-----C
Q 040319 451 --LGFHEMGKQIHSYALKTGFSSDLGVANSMVSMYFK----CCNMSNAIKAFNKMPS-HDIVSWNGLIAGHLLH-----R 518 (812)
Q Consensus 451 --~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k----~g~~~~A~~~f~~~~~-~~~~~~~~li~~~~~~-----g 518 (812)
.++.+.|...+....+.| +...+..|..+|.. .++.++|...|++..+ .+...+..|...|... +
T Consensus 234 g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~ 310 (490)
T 2xm6_A 234 GVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAK 310 (490)
T ss_dssp SSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCC
T ss_pred CCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcC
Confidence 567777777777777654 44566667777777 8999999999988765 5667888888888887 8
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCc---hHHHHHHHHHHhhhhcCccCCcchHHHHHHHHhh----cC
Q 040319 519 QGDEALAVWSSMEKASIKPDAITFVLIISAYRYTNLN---LVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGY----WG 591 (812)
Q Consensus 519 ~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~g---~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~----~g 591 (812)
++++|+..|++..+.| +...+..+...+.. .| +.++|.++|+...+. .++..+..|..+|.. .+
T Consensus 311 ~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~--~g~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~ 381 (490)
T 2xm6_A 311 NREQAISWYTKSAEQG---DATAQANLGAIYFR--LGSEEEHKKAVEWFRKAAAK----GEKAAQFNLGNALLQGKGVKK 381 (490)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH--SCCHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCC
T ss_pred CHHHHHHHHHHHHhcC---CHHHHHHHHHHHHh--CCCcccHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCC
Confidence 9999999999999865 34455555555554 45 889999999998862 467888999999988 89
Q ss_pred ChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHccCCC---CCchHHHHHhhhhhC
Q 040319 592 FLEEAEETINNMPFQPKVSVWRALLDSCRI----RLNTTIGKRVAKHILAMEPQ---DPATYILVSNLYSSS 656 (812)
Q Consensus 592 ~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~y~~~ 656 (812)
++++|.+.+++..-..++..+..|...+.. .+|.++|...++++++.+|+ ++.+...|+.++.+.
T Consensus 382 ~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~~ 453 (490)
T 2xm6_A 382 DEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAKQ 453 (490)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHHH
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHhH
Confidence 999999999986534467788888888887 89999999999999999954 777888888877653
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.65 E-value=6.4e-14 Score=143.35 Aligned_cols=247 Identities=11% Similarity=0.022 Sum_probs=167.9
Q ss_pred HHhcCCHHHHHHHHhcCCCCCCce--eeeHHHHHHHHHcCChhhHHHHHHHhcccCCCCCChhhHHHHHHHhcCccchHH
Q 040319 379 LTRCGRMADAEKMFYRWPTDRDDS--IIWTSMICGYARSGKPEHAILLFHQSQSEATVVPDEIALTSVLGVCGTLGFHEM 456 (812)
Q Consensus 379 y~~~g~~~~A~~~f~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~a~~~~~~~~~ 456 (812)
....|+++.|.+.++.+....|+. .....+..+|...|++++|+..++. .-.|+..++..+...+...++.+.
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~-----~~~~~~~a~~~la~~~~~~~~~~~ 83 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP-----SSAPELQAVRMFAEYLASHSRRDA 83 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT-----TSCHHHHHHHHHHHHHHCSTTHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc-----cCChhHHHHHHHHHHHcCCCcHHH
Confidence 456788888888888765333322 2345567788889999888876643 134566677777788888888888
Q ss_pred HHHHHHHHHHhCC-CCchhHHHHHHHHhhhcCCHHHHHHHHccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 040319 457 GKQIHSYALKTGF-SSDLGVANSMVSMYFKCCNMSNAIKAFNKMPSHDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASI 535 (812)
Q Consensus 457 a~~~~~~~~~~g~-~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 535 (812)
+...++.+...+. +.+...+..+...|.+.|++++|.+.|++ ..+...+..++..|.+.|++++|.+.|+++.+ .
T Consensus 84 A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~--~ 159 (291)
T 3mkr_A 84 IVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQD--Q 159 (291)
T ss_dssp HHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--H
T ss_pred HHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--h
Confidence 8888888887664 33566777788899999999999999988 56778888889999999999999999999988 4
Q ss_pred CCCHHHHH---HHHHHhcCCCCchHHHHHHHHHHhhhhcCccCCcchHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHH
Q 040319 536 KPDAITFV---LIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLEEAEETINNMPFQPKVSVW 612 (812)
Q Consensus 536 ~pd~~t~~---~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~~~p~~~~~ 612 (812)
.|+..... ..+..+.. .|++++|..+|+++.+. . +++..+|
T Consensus 160 ~p~~~~~~l~~a~~~l~~~--~~~~~eA~~~~~~~l~~--~--------------------------------p~~~~~~ 203 (291)
T 3mkr_A 160 DEDATLTQLATAWVSLAAG--GEKLQDAYYIFQEMADK--C--------------------------------SPTLLLL 203 (291)
T ss_dssp CTTCHHHHHHHHHHHHHHC--TTHHHHHHHHHHHHHHH--S--------------------------------CCCHHHH
T ss_pred CcCcHHHHHHHHHHHHHhC--chHHHHHHHHHHHHHHh--C--------------------------------CCcHHHH
Confidence 57753221 11222223 57777777777777652 1 2244455
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCCcch-HHHHHHHHH
Q 040319 613 RALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWHN-SELVREDMR 670 (812)
Q Consensus 613 ~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~-a~~~~~~m~ 670 (812)
+.+..++...|++++|+..++++++++|+++.++..++.++...|++++ +.++++++.
T Consensus 204 ~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~ 262 (291)
T 3mkr_A 204 NGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLK 262 (291)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 5555555555555556666666666666666666666666666666654 345555543
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.6e-14 Score=159.75 Aligned_cols=293 Identities=12% Similarity=0.025 Sum_probs=172.1
Q ss_pred HHHHHHHHHHhc--CCHHHHHHHHhcCCC-CCCceeeeHHHHHH---HHHcCChhhHHHHHHHhcccCCCCCChh-hHHH
Q 040319 371 IEAALLDMLTRC--GRMADAEKMFYRWPT-DRDDSIIWTSMICG---YARSGKPEHAILLFHQSQSEATVVPDEI-ALTS 443 (812)
Q Consensus 371 ~~~~Li~~y~~~--g~~~~A~~~f~~~~~-~~~~~~~~~~li~~---~~~~g~~~~A~~~~~~m~~~~g~~p~~~-t~~~ 443 (812)
++..+..++.+. +++++|...|++... .+++...+..+... +...++.++|++.|++..+ +.|+.. .+..
T Consensus 138 ~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~---l~p~~~~~~~~ 214 (472)
T 4g1t_A 138 LDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIR---LNPDNQYLKVL 214 (472)
T ss_dssp HHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHH---HCSSCHHHHHH
T ss_pred HHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 333333344443 357778887776542 23334455544443 3345777788888887766 455443 3333
Q ss_pred HHHH----hcCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHhhhcCCHHHHHHHHccCCC--C-ChhHHHHHHHHHHh
Q 040319 444 VLGV----CGTLGFHEMGKQIHSYALKTGFSSDLGVANSMVSMYFKCCNMSNAIKAFNKMPS--H-DIVSWNGLIAGHLL 516 (812)
Q Consensus 444 ll~a----~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~ 516 (812)
+... ....+..+.|...+..+.+.. +.+..++..+...|.+.|++++|...|++..+ | +..+|..+...|..
T Consensus 215 l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~ 293 (472)
T 4g1t_A 215 LALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRA 293 (472)
T ss_dssp HHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHH
Confidence 2222 234466778888888777654 34566777888888888888888888877654 3 44566666655532
Q ss_pred c-------------------CChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCC
Q 040319 517 H-------------------RQGDEALAVWSSMEKASIKPDA-ITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPT 576 (812)
Q Consensus 517 ~-------------------g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~ 576 (812)
. +..++|+..|++..+ ..|+. .++..+...+.. .|++++|.+.|++..+ +.|+
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~lg~~~~~--~~~~~~A~~~~~kaL~---~~~~ 366 (472)
T 4g1t_A 294 KVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADE--ANDNLFRVCSILASLHAL--ADQYEEAEYYFQKEFS---KELT 366 (472)
T ss_dssp HHHHHHHC------CHHHHHHHHHHHHHHHHHHHH--HCTTTCCCHHHHHHHHHH--TTCHHHHHHHHHHHHH---SCCC
T ss_pred HHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhh--cCCchhhhhhhHHHHHHH--hccHHHHHHHHHHHHh---cCCC
Confidence 2 235678888888877 55554 556666677777 8899999999988775 2343
Q ss_pred cc----hHHHHHH-HHhhcCChHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHH
Q 040319 577 SE----HYASLVS-VLGYWGFLEEAEETINNMP-FQPKVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVS 650 (812)
Q Consensus 577 ~~----~y~~li~-~l~~~g~~~~A~~~~~~m~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 650 (812)
.. .+..+.. .+...|+.++|++.+++.. +.|+...+... ...++.++++.++.+|+++.+|..|+
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~---------~~~l~~~~~~~l~~~p~~~~~~~~LG 437 (472)
T 4g1t_A 367 PVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKM---------KDKLQKIAKMRLSKNGADSEALHVLA 437 (472)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHH---------HHHHHHHHHHHHHHCC-CTTHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHH---------HHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 22 2333333 2346788899998888754 66765443332 34456678888899999999999999
Q ss_pred hhhhhCCCcchHHHHHHHHHhCCCCCCCceeEE
Q 040319 651 NLYSSSGRWHNSELVREDMREKGFRKHPSRSWI 683 (812)
Q Consensus 651 ~~y~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~ 683 (812)
.+|...|++++|.+.+++.-+.|.......+|+
T Consensus 438 ~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 438 FLQELNEKMQQADEDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp HHHHHHHHCC-----------------------
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence 999999999999999999877665444455565
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.64 E-value=2.2e-13 Score=151.30 Aligned_cols=352 Identities=10% Similarity=-0.036 Sum_probs=267.2
Q ss_pred CcccHHHHHHHHHh----CCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHhcc----chhhhhHHHHHhhHHHhcCCCch
Q 040319 298 NSVSYNALLAGYCK----NGKAMEALGLFVKLLEEGLVLTEFTLTSVVNACGL----IMEAKLSEQIHGFVMKFGLGSND 369 (812)
Q Consensus 298 d~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~----~~~~~~a~~i~~~~~~~g~~~~~ 369 (812)
|+.++..+...|.. .+++++|+..|++..+.| +...+..+-..+.. .++.+.|...+....+.| +.
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~ 111 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LP 111 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CH
Confidence 34444444444544 556666666666665543 22333333333333 556666666666665544 44
Q ss_pred hHHHHHHHHHHh----cCCHHHHHHHHhcCCCCCCceeeeHHHHHHHHH----cCChhhHHHHHHHhcccCCCCCChhhH
Q 040319 370 CIEAALLDMLTR----CGRMADAEKMFYRWPTDRDDSIIWTSMICGYAR----SGKPEHAILLFHQSQSEATVVPDEIAL 441 (812)
Q Consensus 370 ~~~~~Li~~y~~----~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~g~~p~~~t~ 441 (812)
.....|..+|.. .+++++|.+.|++.. ...+...+..+...|.. .+++++|++.|++..+ .+ +...+
T Consensus 112 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~-~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~-~~---~~~a~ 186 (490)
T 2xm6_A 112 QAQQNLGVMYHEGNGVKVDKAESVKWFRLAA-EQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAE-QG---NVWSC 186 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH-TT---CHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH-CC---CHHHH
Confidence 556667777877 789999999999877 55557788888888887 7899999999999887 43 45555
Q ss_pred HHHHHHhcC----ccchHHHHHHHHHHHHhCCCCchhHHHHHHHHhhh----cCCHHHHHHHHccCCC-CChhHHHHHHH
Q 040319 442 TSVLGVCGT----LGFHEMGKQIHSYALKTGFSSDLGVANSMVSMYFK----CCNMSNAIKAFNKMPS-HDIVSWNGLIA 512 (812)
Q Consensus 442 ~~ll~a~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k----~g~~~~A~~~f~~~~~-~~~~~~~~li~ 512 (812)
..+-..+.. .++.+.|...+....+.| +...+..|..+|.. .++.++|...|++..+ .+...+..+..
T Consensus 187 ~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~ 263 (490)
T 2xm6_A 187 NQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGY 263 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 556556655 789999999999999865 56677888888886 8999999999998665 56778888888
Q ss_pred HHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCC-----chHHHHHHHHHHhhhhcCccCCcchHHHH
Q 040319 513 GHLL----HRQGDEALAVWSSMEKASIKPDAITFVLIISAYRYTNL-----NLVDSCRKLFLSMKTIYNIEPTSEHYASL 583 (812)
Q Consensus 513 ~~~~----~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~-----g~~~~a~~~~~~m~~~~~~~p~~~~y~~l 583 (812)
.|.. .++.++|++.|++..+.| +...+..+...+.. . ++.++|..+|+...+ . .+...+..+
T Consensus 264 ~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~--~~~g~~~~~~~A~~~~~~a~~-~---~~~~a~~~l 334 (490)
T 2xm6_A 264 ILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDK--GAEGVAKNREQAISWYTKSAE-Q---GDATAQANL 334 (490)
T ss_dssp HHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHH--CBTTBCCCHHHHHHHHHHHHH-T---TCHHHHHHH
T ss_pred HHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc--CCCCCcCCHHHHHHHHHHHHh-c---CCHHHHHHH
Confidence 8888 899999999999998865 33455555555544 4 899999999999886 2 346778888
Q ss_pred HHHHhhcC---ChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhh-
Q 040319 584 VSVLGYWG---FLEEAEETINNMPFQPKVSVWRALLDSCRI----RLNTTIGKRVAKHILAMEPQDPATYILVSNLYSS- 655 (812)
Q Consensus 584 i~~l~~~g---~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~- 655 (812)
..+|.+.| ++++|++.+++.....++..+..|...+.. .++.++|...++++.+.. ++.++..|+.+|..
T Consensus 335 g~~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g 412 (490)
T 2xm6_A 335 GAIYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYG 412 (490)
T ss_dssp HHHHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHT
T ss_pred HHHHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcC
Confidence 88888767 789999999986544678888899998888 899999999999999865 57899999999999
Q ss_pred ---CCCcchHHHHHHHHHhCCC
Q 040319 656 ---SGRWHNSELVREDMREKGF 674 (812)
Q Consensus 656 ---~g~~~~a~~~~~~m~~~g~ 674 (812)
.+++++|.+.+++..+.+.
T Consensus 413 ~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 413 LGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp SSSCCCHHHHHHHHHHHHHHHC
T ss_pred CCCCCCHHHHHHHHHHHHHCCC
Confidence 8999999999999877653
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.4e-15 Score=162.13 Aligned_cols=256 Identities=11% Similarity=-0.041 Sum_probs=194.6
Q ss_pred eeeeHHHHHHHHHcCChhhHHHHHHHhcccCCCCC-ChhhHHHHHHHhcCccchHHHHHHHHHHHHhCCCCchhHHHHHH
Q 040319 402 SIIWTSMICGYARSGKPEHAILLFHQSQSEATVVP-DEIALTSVLGVCGTLGFHEMGKQIHSYALKTGFSSDLGVANSMV 480 (812)
Q Consensus 402 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p-~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li 480 (812)
...|..+...+.+.|++++|+..|+++.. ..| +..++..+...+...|+++.|...+..+.+.. +.+..++..+.
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 140 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAIL---QDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALA 140 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHH
Confidence 55688888888999999999999998886 334 44567777778888888888888888888764 34577888888
Q ss_pred HHhhhcCCHHHHHHHHccCCC--CC-----------hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC---HHHHHH
Q 040319 481 SMYFKCCNMSNAIKAFNKMPS--HD-----------IVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPD---AITFVL 544 (812)
Q Consensus 481 ~~y~k~g~~~~A~~~f~~~~~--~~-----------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd---~~t~~~ 544 (812)
..|.+.|++++|...|+++.+ |+ ...+..+...|...|++++|++.|+++.+ ..|+ ..++..
T Consensus 141 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~ 218 (365)
T 4eqf_A 141 VSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAH--QNGDMIDPDLQTG 218 (365)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHH--HSCSSCCHHHHHH
T ss_pred HHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHH--hCcCccCHHHHHH
Confidence 888888888888888887654 21 12233457788888899999999999888 4554 577777
Q ss_pred HHHHhcCCCCchHHHHHHHHHHhhhhcCccC-CcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHh
Q 040319 545 IISAYRYTNLNLVDSCRKLFLSMKTIYNIEP-TSEHYASLVSVLGYWGFLEEAEETINNMP-FQP-KVSVWRALLDSCRI 621 (812)
Q Consensus 545 ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~ 621 (812)
+...+.. .|++++|.++|+.+.+. .| +...|..++.+|.+.|++++|++.++++. ..| +..+|..+...+..
T Consensus 219 l~~~~~~--~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 293 (365)
T 4eqf_A 219 LGVLFHL--SGEFNRAIDAFNAALTV---RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCIN 293 (365)
T ss_dssp HHHHHHH--HTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHH--CCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHH
Confidence 7788888 88999999999888762 34 47788888999999999999999888864 445 57788888888889
Q ss_pred cCCHHHHHHHHHHHHccCCC------------CCchHHHHHhhhhhCCCcchHHHHHHH
Q 040319 622 RLNTTIGKRVAKHILAMEPQ------------DPATYILVSNLYSSSGRWHNSELVRED 668 (812)
Q Consensus 622 ~~~~~~a~~~~~~~~~~~p~------------~~~~~~~l~~~y~~~g~~~~a~~~~~~ 668 (812)
.|+.++|...+++++++.|+ +...+..|+.+|...|+.+.+.++.++
T Consensus 294 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 294 LGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 99999999999999988876 356788889999999998888776543
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.63 E-value=9.2e-15 Score=155.75 Aligned_cols=231 Identities=11% Similarity=-0.015 Sum_probs=196.0
Q ss_pred ChhhHHHHHHHhcCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHhhhcCCHHHHHHHHccCCC---CChhHHHHHHHH
Q 040319 437 DEIALTSVLGVCGTLGFHEMGKQIHSYALKTGFSSDLGVANSMVSMYFKCCNMSNAIKAFNKMPS---HDIVSWNGLIAG 513 (812)
Q Consensus 437 ~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~ 513 (812)
+...+..+...+...|+++.|..++..+++.. +.+..++..+...|.+.|++++|...|+++.+ .+..+|..+...
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVS 142 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 34457778888899999999999999999865 45788999999999999999999999998764 457899999999
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHH-----------HHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCCcchHHH
Q 040319 514 HLLHRQGDEALAVWSSMEKASIKPDAIT-----------FVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYAS 582 (812)
Q Consensus 514 ~~~~g~~~~A~~l~~~m~~~g~~pd~~t-----------~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~ 582 (812)
|...|++++|++.|+++.+ +.|+... +..+...+.. .|++++|.++|+.+.+...-.++...|..
T Consensus 143 ~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 218 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIK--QNPKYKYLVKNKKGSPGLTRRMSKSPVD--SSVLEGVKELYLEAAHQNGDMIDPDLQTG 218 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHH--HCHHHHCC-------------------C--CHHHHHHHHHHHHHHHHSCSSCCHHHHHH
T ss_pred HHccccHHHHHHHHHHHHH--hCccchHHHhhhccchHHHHHHHHHHhh--hhhHHHHHHHHHHHHHhCcCccCHHHHHH
Confidence 9999999999999999998 5665422 2234556777 99999999999999874322225789999
Q ss_pred HHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCCcc
Q 040319 583 LVSVLGYWGFLEEAEETINNMP-FQP-KVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWH 660 (812)
Q Consensus 583 li~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~ 660 (812)
++.+|.+.|++++|++.++++. ..| +..+|..+..++...|+.+.|+..++++++++|+++.++..++.+|...|+++
T Consensus 219 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~ 298 (365)
T 4eqf_A 219 LGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYR 298 (365)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHH
Confidence 9999999999999999999865 444 68899999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhC
Q 040319 661 NSELVREDMREK 672 (812)
Q Consensus 661 ~a~~~~~~m~~~ 672 (812)
+|.+.++++.+.
T Consensus 299 ~A~~~~~~al~~ 310 (365)
T 4eqf_A 299 EAVSNFLTALSL 310 (365)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999998654
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.63 E-value=5.1e-15 Score=157.81 Aligned_cols=256 Identities=10% Similarity=0.009 Sum_probs=204.0
Q ss_pred HHHcCChhhHHH-HHHHhcccCCCCC--ChhhHHHHHHHhcCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHhhhcCC
Q 040319 412 YARSGKPEHAIL-LFHQSQSEATVVP--DEIALTSVLGVCGTLGFHEMGKQIHSYALKTGFSSDLGVANSMVSMYFKCCN 488 (812)
Q Consensus 412 ~~~~g~~~~A~~-~~~~m~~~~g~~p--~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~ 488 (812)
+...|++++|++ .|.+......-.| +...+..+...+...|+++.|...+..+++.. +.+..++..+...|.+.|+
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcC
Confidence 344588999998 8887765111122 34567778888999999999999999999864 4577889999999999999
Q ss_pred HHHHHHHHccCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHH----------------HHHHh
Q 040319 489 MSNAIKAFNKMPS---HDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDAITFVL----------------IISAY 549 (812)
Q Consensus 489 ~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~----------------ll~a~ 549 (812)
+++|...|+++.+ .+..+|..+...|...|++++|++.|+++.+ ..|+...... .+..+
T Consensus 114 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (368)
T 1fch_A 114 ELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLR--YTPAYAHLVTPAEEGAGGAGLGPSKRILGSL 191 (368)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TSTTTGGGCC---------------CTTHHH
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcCcHHHHHHHHHHhhhhcccHHHHHHHHH
Confidence 9999999997654 5778999999999999999999999999999 5565432221 12333
Q ss_pred cCCCCchHHHHHHHHHHhhhhcCccCCcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHH
Q 040319 550 RYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLEEAEETINNMP-FQP-KVSVWRALLDSCRIRLNTTI 627 (812)
Q Consensus 550 ~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~ 627 (812)
.. .|++++|..+|+.+.+...-.++...+..++.++.+.|++++|++.++++. ..| +..+|..+...+...|+.+.
T Consensus 192 ~~--~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~ 269 (368)
T 1fch_A 192 LS--DSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEE 269 (368)
T ss_dssp HH--HHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred hh--cccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHH
Confidence 36 899999999999998743222247889999999999999999999999865 445 67899999999999999999
Q ss_pred HHHHHHHHHccCCCCCchHHHHHhhhhhCCCcchHHHHHHHHHhC
Q 040319 628 GKRVAKHILAMEPQDPATYILVSNLYSSSGRWHNSELVREDMREK 672 (812)
Q Consensus 628 a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 672 (812)
|...++++++++|+++..+..++.+|.+.|++++|.+.++++.+.
T Consensus 270 A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 314 (368)
T 1fch_A 270 AVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNM 314 (368)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999988653
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.2e-13 Score=141.40 Aligned_cols=253 Identities=8% Similarity=-0.057 Sum_probs=197.2
Q ss_pred HHhcCChHHHHHHHhcCCCCcc----hhHHHHHHHHHhhCChhHHHHHhccCCCCCcccHHHHHHHHHhCCChHHHHHHH
Q 040319 247 YTKCGRVKDVVALLERMPVMDI----ITLTEIIIAYMEFGYVDLAVEIFDKMPEKNSVSYNALLAGYCKNGKAMEALGLF 322 (812)
Q Consensus 247 ~~~~g~~~~A~~l~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~ 322 (812)
....|++..|+..++.....+. .....+.++|...|++++|+..++....|+..++..+...+...++.++|++.+
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~~~~~~~a~~~la~~~~~~~~~~~A~~~l 88 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASHSRRDAIVAEL 88 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTTSCHHHHHHHHHHHHHHCSTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcccCChhHHHHHHHHHHHcCCCcHHHHHHHH
Confidence 4556888888888877654332 344556788888888888888887765566667777888888888889999998
Q ss_pred HHHHHcCCCCCHhHHHHHHHHhccchhhhhHHHHHhhHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCCce
Q 040319 323 VKLLEEGLVLTEFTLTSVVNACGLIMEAKLSEQIHGFVMKFGLGSNDCIEAALLDMLTRCGRMADAEKMFYRWPTDRDDS 402 (812)
Q Consensus 323 ~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~ 402 (812)
+++...+..|+...+ +..+...|.+.|++++|.+.|++ +++.
T Consensus 89 ~~ll~~~~~P~~~~~----------------------------------~~~la~~~~~~g~~~~Al~~l~~----~~~~ 130 (291)
T 3mkr_A 89 DREMSRSVDVTNTTF----------------------------------LLMAASIYFYDQNPDAALRTLHQ----GDSL 130 (291)
T ss_dssp HHHHHSCCCCSCHHH----------------------------------HHHHHHHHHHTTCHHHHHHHHTT----CCSH
T ss_pred HHHHhcccCCCCHHH----------------------------------HHHHHHHHHHCCCHHHHHHHHhC----CCCH
Confidence 888877666664433 33445678899999999999987 3447
Q ss_pred eeeHHHHHHHHHcCChhhHHHHHHHhcccCCCCCChhhHH---HHHHHhcCccchHHHHHHHHHHHHhCCCCchhHHHHH
Q 040319 403 IIWTSMICGYARSGKPEHAILLFHQSQSEATVVPDEIALT---SVLGVCGTLGFHEMGKQIHSYALKTGFSSDLGVANSM 479 (812)
Q Consensus 403 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~---~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~L 479 (812)
..+..++..|.+.|++++|.+.|+++.. ..|+..... ..+..+...|++++|..++..+.+. .+.+..+++.+
T Consensus 131 ~~~~~l~~~~~~~g~~~~A~~~l~~~~~---~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~l 206 (291)
T 3mkr_A 131 ECMAMTVQILLKLDRLDLARKELKKMQD---QDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQ 206 (291)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHh---hCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHH
Confidence 7888899999999999999999999987 457653221 2233444568999999999999987 45688899999
Q ss_pred HHHhhhcCCHHHHHHHHccCCC---CChhHHHHHHHHHHhcCChHH-HHHHHHHHHHCCCCCCHHHHH
Q 040319 480 VSMYFKCCNMSNAIKAFNKMPS---HDIVSWNGLIAGHLLHRQGDE-ALAVWSSMEKASIKPDAITFV 543 (812)
Q Consensus 480 i~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~-A~~l~~~m~~~g~~pd~~t~~ 543 (812)
..+|.+.|++++|...|++... .+..+|+.++..+...|+.++ +.++++++++ +.|+.....
T Consensus 207 a~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~--~~P~~~~~~ 272 (291)
T 3mkr_A 207 AACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKD--AHRSHPFIK 272 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH--HCTTCHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--hCCCChHHH
Confidence 9999999999999999998654 467789999999999999876 6789999998 788876543
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.8e-16 Score=178.02 Aligned_cols=128 Identities=11% Similarity=0.078 Sum_probs=95.7
Q ss_pred CCCchhHHHHHHHHhhhcCCHHHHHHHHccCC-------CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHH
Q 040319 469 FSSDLGVANSMVSMYFKCCNMSNAIKAFNKMP-------SHDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDAIT 541 (812)
Q Consensus 469 ~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~-------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t 541 (812)
...-..+||+||++|+|+|++++|.++|++|. .||++|||+||.||++.|+.++|.++|++|.+.|+.||.+|
T Consensus 123 ~~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvT 202 (1134)
T 3spa_A 123 LSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLS 202 (1134)
T ss_dssp CCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHH
Confidence 33445678888888888888888888886543 37888888888888888888888888888888888888888
Q ss_pred HHHHHHHhcCCCCch-HHHHHHHHHHhhhhcCccCCcchHHHHHHHHhhcCChHHHHHH
Q 040319 542 FVLIISAYRYTNLNL-VDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLEEAEET 599 (812)
Q Consensus 542 ~~~ll~a~~~~~~g~-~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~ 599 (812)
|+++|.++++ .|. .++|.++|++|.+ .|+.||..+|++++....|.+-++...++
T Consensus 203 YntLI~glcK--~G~~~e~A~~Ll~EM~~-kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv 258 (1134)
T 3spa_A 203 YAAALQCMGR--QDQDAGTIERCLEQMSQ-EGLKLQALFTAVLLSEEDRATVLKAVHKV 258 (1134)
T ss_dssp HHHHHHHHHH--HTCCHHHHHHHHHHHHH-HTCCSHHHHHHSCCCHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHh--CCCcHHHHHHHHHHHHH-cCCCCChhhcccccChhhHHHHHHHHHHh
Confidence 8888888777 776 4677788888876 67888888888887766666554444444
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.61 E-value=5.1e-16 Score=174.38 Aligned_cols=146 Identities=12% Similarity=0.080 Sum_probs=126.8
Q ss_pred cchHHHHHHHHccCChhhHHHHHhcCC-------CCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHH
Q 040319 34 RFGNPLISAYLKLGHVADAYKIFYGLS-------SPNVVSFTSLISGLAKLGREEEAIELFFRMRSEGIVPNEHSFVAIL 106 (812)
Q Consensus 34 ~~~~~li~~~~~~g~~~~A~~~f~~~~-------~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll 106 (812)
.+||+||++|++.|++++|.++|+.|. .||+++||+||.+|++.|++++|.++|++|.+.|+.||..||+++|
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI 207 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL 207 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 579999999999999999999997753 5999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCh-HHHHHHHHHHHHhCCCCchHHHHHHHHHhhhcCCCHHHHHHHHhcCCCC-----CcchHHHHHHHHHcCC
Q 040319 107 TACIRLLEL-ELGFQIHALIVKMGCVDSVFVTNALMGLYGKFSFCLDYLLKLFDELPHK-----DTVSWNTVISSVVNEF 180 (812)
Q Consensus 107 ~~~~~~~~~-~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~~a~~~f~~~~~~-----~~~~~~~li~~~~~~g 180 (812)
.++++.|.. +.|.+++++|.+.|+.||..+|++++..+.+.+ -++.+++++..+..+ .+.+.+.|...|.+.+
T Consensus 208 ~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~-vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~s~d~ 286 (1134)
T 3spa_A 208 QCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRAT-VLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDG 286 (1134)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHH-HHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHHCCCS
T ss_pred HHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHH-HHHHHHHhCcccCCCCCCcccccchHHHHHHHccCC
Confidence 999999985 789999999999999999999999999998888 777777776655431 2334444555566555
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.59 E-value=1.4e-14 Score=151.38 Aligned_cols=255 Identities=13% Similarity=0.008 Sum_probs=188.4
Q ss_pred eeeHHHHHHHHHcCChhhHHHHHHHhcccCCCCC-ChhhHHHHHHHhcCccchHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 040319 403 IIWTSMICGYARSGKPEHAILLFHQSQSEATVVP-DEIALTSVLGVCGTLGFHEMGKQIHSYALKTGFSSDLGVANSMVS 481 (812)
Q Consensus 403 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p-~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~ 481 (812)
..|..+...+...|++++|+.+|+++.. ..| +...+..+...+...|+++.|...+..+.+.. +.+..++..+..
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 97 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQ---AAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAV 97 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHH
Confidence 3455555666666666666666666654 223 33345555556666666666666666666543 335566777777
Q ss_pred HhhhcCCHHHHHHHHccCCC---CChhHHHHH--------------HH-HHHhcCChHHHHHHHHHHHHCCCCCC-HHHH
Q 040319 482 MYFKCCNMSNAIKAFNKMPS---HDIVSWNGL--------------IA-GHLLHRQGDEALAVWSSMEKASIKPD-AITF 542 (812)
Q Consensus 482 ~y~k~g~~~~A~~~f~~~~~---~~~~~~~~l--------------i~-~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~ 542 (812)
.|.+.|++++|...|+++.. .+...+..+ .. .+...|++++|++.++++.+ ..|+ ...+
T Consensus 98 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~ 175 (327)
T 3cv0_A 98 SHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALE--MNPNDAQLH 175 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHH--HSTTCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHh--hCCCCHHHH
Confidence 77778888888777776543 222233322 22 36778889999999999988 4454 5677
Q ss_pred HHHHHHhcCCCCchHHHHHHHHHHhhhhcCccC-CcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHH
Q 040319 543 VLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEP-TSEHYASLVSVLGYWGFLEEAEETINNMP-FQP-KVSVWRALLDSC 619 (812)
Q Consensus 543 ~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~ 619 (812)
..+...+.. .|++++|.++++.+.+. .| +...|..++.++.+.|++++|.+.++++. ..| +..+|..+...+
T Consensus 176 ~~la~~~~~--~~~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~ 250 (327)
T 3cv0_A 176 ASLGVLYNL--SNNYDSAAANLRRAVEL---RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSY 250 (327)
T ss_dssp HHHHHHHHH--TTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHH--hccHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 777778888 99999999999988762 34 47789999999999999999999998864 444 678899999999
Q ss_pred HhcCCHHHHHHHHHHHHccCCC------------CCchHHHHHhhhhhCCCcchHHHHHHH
Q 040319 620 RIRLNTTIGKRVAKHILAMEPQ------------DPATYILVSNLYSSSGRWHNSELVRED 668 (812)
Q Consensus 620 ~~~~~~~~a~~~~~~~~~~~p~------------~~~~~~~l~~~y~~~g~~~~a~~~~~~ 668 (812)
...|+.+.|...+++++++.|+ ++..+..++.+|...|++++|.+++++
T Consensus 251 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 311 (327)
T 3cv0_A 251 SNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQ 311 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTC
T ss_pred HHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 9999999999999999999999 788999999999999999999998764
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.57 E-value=1.5e-12 Score=146.11 Aligned_cols=416 Identities=9% Similarity=0.010 Sum_probs=257.5
Q ss_pred CCcchHHHHHHHHHcCCChhHHHHHHHHhHhcCCCCCCcchHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHH
Q 040319 164 KDTVSWNTVISSVVNEFEYEKAFELFRDMKRDNGFTVDYFTISTLLTACTGCFVLMEGRAVHAHAIRIGLGANLSVNNAL 243 (812)
Q Consensus 164 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 243 (812)
.|..+|..++. +.+.|++++|..+|+.+. . -.+-+...|...+..+.+.|+.+.|..+++.+++.. |+...|..+
T Consensus 11 ~~~~~w~~l~~-~~~~~~~~~a~~~~e~al-~-~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~ 85 (530)
T 2ooe_A 11 YDLDAWSILIR-EAQNQPIDKARKTYERLV-A-QFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCY 85 (530)
T ss_dssp TCHHHHHHHHH-HHHSSCHHHHHHHHHHHH-T-TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHH
T ss_pred CCHHHHHHHHH-HHHhCCHHHHHHHHHHHH-H-HCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHH
Confidence 36778888887 477888999999998883 2 123334457777777777888888888888887653 466666666
Q ss_pred HHH-HHhcCChHHHHH----HHhcCCCCcchhHHHHHHHHHhhCChhHHHHHhccCCCCCcccHHHHHHHHHh-------
Q 040319 244 IGF-YTKCGRVKDVVA----LLERMPVMDIITLTEIIIAYMEFGYVDLAVEIFDKMPEKNSVSYNALLAGYCK------- 311 (812)
Q Consensus 244 i~~-~~~~g~~~~A~~----l~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~------- 311 (812)
+.. ....|+.+.|.+ +|++.. ... .+...+...|...+....+
T Consensus 86 ~~~~~~~~~~~~~a~~~~~~~~~~al------------------------~~~-g~~~~~~~~w~~~~~~~~~~~~~~~~ 140 (530)
T 2ooe_A 86 LSYVRETKGKLPSYKEKMAQAYDFAL------------------------DKI-GMEIMSYQIWVDYINFLKGVEAVGSY 140 (530)
T ss_dssp HHHHHHHTTTSTTHHHHHHHHHHHHH------------------------HHT-TTSTTCHHHHHHHHHHHHHSCCCSST
T ss_pred HHHHHHHccchhhHHHHHHHHHHHHH------------------------HHC-CCCcccHHHHHHHHHHHhcCCCcccH
Confidence 643 234566666554 333220 000 0001123344444443322
Q ss_pred --CCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHhccchhhhhHHHHHhhHHHhcCCCchhHHHHHHHHHHhcCCHHHHH
Q 040319 312 --NGKAMEALGLFVKLLEEGLVLTEFTLTSVVNACGLIMEAKLSEQIHGFVMKFGLGSNDCIEAALLDMLTRCGRMADAE 389 (812)
Q Consensus 312 --~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~ 389 (812)
.|++++|..+|++.+.....+....|..........+. ..+..++. .+.+++..|.
T Consensus 141 ~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~-~~~~~~l~---------------------~~~~~~~~A~ 198 (530)
T 2ooe_A 141 AENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINI-HLAKKMIE---------------------DRSRDYMNAR 198 (530)
T ss_dssp THHHHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCH-HHHHHHHH---------------------TTHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhch-hHHHHHHH---------------------HhhHHHHHHH
Confidence 46666777777776652111111122111110000000 00000000 0112233333
Q ss_pred HHHh----------cCCC-CCCc--------eeeeHHHHHHHHHc----CCh----hhHHHHHHHhcccCCCCCC-hhhH
Q 040319 390 KMFY----------RWPT-DRDD--------SIIWTSMICGYARS----GKP----EHAILLFHQSQSEATVVPD-EIAL 441 (812)
Q Consensus 390 ~~f~----------~~~~-~~~~--------~~~~~~li~~~~~~----g~~----~~A~~~~~~m~~~~g~~p~-~~t~ 441 (812)
.+++ .... .+|+ ...|...+.-.... ++. .+|+.+|++... ..|+ ...|
T Consensus 199 ~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~---~~p~~~~~w 275 (530)
T 2ooe_A 199 RVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLL---VLGHHPDIW 275 (530)
T ss_dssp HHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHH---HHTTCHHHH
T ss_pred HHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHH---hCCCCHHHH
Confidence 3222 1110 0111 12444444332221 122 367778888776 3443 3445
Q ss_pred HHHHHHhcC-------ccchH-------HHHHHHHHHHHhCCCCchhHHHHHHHHhhhcCCHHHHHHHHccCCC--CC-h
Q 040319 442 TSVLGVCGT-------LGFHE-------MGKQIHSYALKTGFSSDLGVANSMVSMYFKCCNMSNAIKAFNKMPS--HD-I 504 (812)
Q Consensus 442 ~~ll~a~~~-------~~~~~-------~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~--~~-~ 504 (812)
......+.. .|+++ .|..+++..++.-.+.+..++..++..+.+.|++++|..+|+++.+ |+ .
T Consensus 276 ~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~ 355 (530)
T 2ooe_A 276 YEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDP 355 (530)
T ss_dssp HHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCH
T ss_pred HHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCc
Confidence 555555443 67776 8888888887633345688899999999999999999999997654 43 3
Q ss_pred -hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHH-HHhcCCCCchHHHHHHHHHHhhhhcCccC-CcchH
Q 040319 505 -VSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDA-ITFVLII-SAYRYTNLNLVDSCRKLFLSMKTIYNIEP-TSEHY 580 (812)
Q Consensus 505 -~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll-~a~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y 580 (812)
..|..++..+.+.|+.++|.++|++..+ ..|+. ..+.... ..+.. .|+.++|..+|+...+. .| +...|
T Consensus 356 ~~~~~~~~~~~~~~~~~~~A~~~~~~Al~--~~~~~~~~~~~~a~~~~~~--~~~~~~A~~~~e~al~~---~p~~~~~~ 428 (530)
T 2ooe_A 356 TLVYIQYMKFARRAEGIKSGRMIFKKARE--DARTRHHVYVTAALMEYYC--SKDKSVAFKIFELGLKK---YGDIPEYV 428 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT--CTTCCTHHHHHHHHHHHHH--TCCHHHHHHHHHHHHHH---HTTCHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHh--ccCCchHHHHHHHHHHHHH--cCChhHHHHHHHHHHHH---CCCCHHHH
Confidence 5899999999999999999999999998 44543 2232221 12235 78999999999988763 35 47899
Q ss_pred HHHHHHHhhcCChHHHHHHHHhCC----CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCC
Q 040319 581 ASLVSVLGYWGFLEEAEETINNMP----FQPK--VSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQ 641 (812)
Q Consensus 581 ~~li~~l~~~g~~~~A~~~~~~m~----~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~ 641 (812)
..+++.+.+.|+.++|..+|++.. ..|+ ..+|...+.....+|+.+.+..+.+++.+..|+
T Consensus 429 ~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 429 LAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 495 (530)
T ss_dssp HHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCch
Confidence 999999999999999999998853 3342 558999999999999999999999999999885
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.56 E-value=4.2e-14 Score=138.09 Aligned_cols=193 Identities=11% Similarity=0.061 Sum_probs=157.7
Q ss_pred CCchhHHHHHHHHhhhcCCHHHHHHHHccCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHH
Q 040319 470 SSDLGVANSMVSMYFKCCNMSNAIKAFNKMPS---HDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDA-ITFVLI 545 (812)
Q Consensus 470 ~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~l 545 (812)
+++...+..+...+.+.|++++|...|++..+ .+...|..+...|.+.|++++|+..|++.++ ..|+. ..+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVA--RTPRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCcHHHHHHH
Confidence 45667788889999999999999999997654 4678899999999999999999999999999 67876 567777
Q ss_pred HHHhcCCCC-----------chHHHHHHHHHHhhhhcCccCC-cchHHHHHHHHhhcCChHHHHHHHHhCC-CCCCHHHH
Q 040319 546 ISAYRYTNL-----------NLVDSCRKLFLSMKTIYNIEPT-SEHYASLVSVLGYWGFLEEAEETINNMP-FQPKVSVW 612 (812)
Q Consensus 546 l~a~~~~~~-----------g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p~~~~~ 612 (812)
..++.. . |++++|...|+...+ +.|+ ...|..+..+|...|++++|++.+++.. ...+...|
T Consensus 80 g~~~~~--~~~~~~~~~~~~g~~~~A~~~~~~al~---~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 154 (217)
T 2pl2_A 80 SEAYVA--LYRQAEDRERGKGYLEQALSVLKDAER---VNPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIR 154 (217)
T ss_dssp HHHHHH--HHHTCSSHHHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHH
T ss_pred HHHHHH--hhhhhhhhcccccCHHHHHHHHHHHHH---hCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHH
Confidence 777777 8 999999999999887 4565 7789999999999999999999999864 22778899
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCCcchHHHHHHHH
Q 040319 613 RALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWHNSELVREDM 669 (812)
Q Consensus 613 ~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 669 (812)
..+..++...|+.++|+..++++++++|+++..+..++.+|...|++++|.+.+++.
T Consensus 155 ~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 155 SALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999988764
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.56 E-value=1.7e-13 Score=143.08 Aligned_cols=228 Identities=14% Similarity=0.053 Sum_probs=131.2
Q ss_pred CcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHhccchhhhhHHHHHhhHHHhcCCCchhHHHHHHH
Q 040319 298 NSVSYNALLAGYCKNGKAMEALGLFVKLLEEGLVLTEFTLTSVVNACGLIMEAKLSEQIHGFVMKFGLGSNDCIEAALLD 377 (812)
Q Consensus 298 d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~ 377 (812)
+...|..+...+...|++++|..+|+++.+.. |+ +..++..+..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~----------------------------------~~~~~~~l~~ 63 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA--PE----------------------------------REEAWRSLGL 63 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT----------------------------------CHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CC----------------------------------CHHHHHHHHH
Confidence 45567788888899999999999999887753 21 2233344455
Q ss_pred HHHhcCCHHHHHHHHhcCCC-CCCceeeeHHHHHHHHHcCChhhHHHHHHHhcccCCCCCChhhHHHHH-----------
Q 040319 378 MLTRCGRMADAEKMFYRWPT-DRDDSIIWTSMICGYARSGKPEHAILLFHQSQSEATVVPDEIALTSVL----------- 445 (812)
Q Consensus 378 ~y~~~g~~~~A~~~f~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll----------- 445 (812)
.|.+.|++++|.+.|+++.. .+++..+|..+...|...|++++|++.|+++.. ..|+.......+
T Consensus 64 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 140 (327)
T 3cv0_A 64 TQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLL---SQPQYEQLGSVNLQADVDIDDLN 140 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---TSTTTTTC---------------
T ss_pred HHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCccHHHHHHHhHHHHHHHHHH
Confidence 56666666666666665431 123355666777777777777777777777765 334333222221
Q ss_pred ---H--HhcCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHhhhcCCHHHHHHHHccCCC---CChhHHHHHHHHHHhc
Q 040319 446 ---G--VCGTLGFHEMGKQIHSYALKTGFSSDLGVANSMVSMYFKCCNMSNAIKAFNKMPS---HDIVSWNGLIAGHLLH 517 (812)
Q Consensus 446 ---~--a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~ 517 (812)
. .+...|+++.|...+..+.+.. +.+..++..+...|.+.|++++|...|+++.+ .+...|..+...|...
T Consensus 141 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 219 (327)
T 3cv0_A 141 VQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANG 219 (327)
T ss_dssp -----CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Confidence 2 2455566666666666665543 22445555566666666666666666555432 2345555555566666
Q ss_pred CChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhcCCCCchHHHHHHHHHHhhh
Q 040319 518 RQGDEALAVWSSMEKASIKPD-AITFVLIISAYRYTNLNLVDSCRKLFLSMKT 569 (812)
Q Consensus 518 g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~ 569 (812)
|++++|++.|+++.+ ..|+ ..++..+...+.. .|++++|.+.|+.+.+
T Consensus 220 ~~~~~A~~~~~~a~~--~~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~a~~ 268 (327)
T 3cv0_A 220 NRPQEALDAYNRALD--INPGYVRVMYNMAVSYSN--MSQYDLAAKQLVRAIY 268 (327)
T ss_dssp TCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHH--hccHHHHHHHHHHHHH
Confidence 666666666666555 3333 2444444445555 5555555555555543
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.53 E-value=3.8e-13 Score=148.70 Aligned_cols=377 Identities=12% Similarity=0.040 Sum_probs=214.3
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHhcCC------------CCcchhHHHHHHHHHhhCChhHHHHHhccCCC-------
Q 040319 236 NLSVNNALIGFYTKCGRVKDVVALLERMP------------VMDIITLTEIIIAYMEFGYVDLAVEIFDKMPE------- 296 (812)
Q Consensus 236 ~~~~~~~li~~~~~~g~~~~A~~l~~~~~------------~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~------- 296 (812)
....||.|...|...|+.++|++.|++.. .....+|+.+...|...|++++|...+++..+
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 35677888888888888888888776642 12346788888889999999888887765431
Q ss_pred C----CcccHHHHHHHHHh--CCChHHHHHHHHHHHHcCCCCCHh-HHHHHHHH---hccchhhhhHHHHHhhHHHhcCC
Q 040319 297 K----NSVSYNALLAGYCK--NGKAMEALGLFVKLLEEGLVLTEF-TLTSVVNA---CGLIMEAKLSEQIHGFVMKFGLG 366 (812)
Q Consensus 297 ~----d~~~~~~li~~~~~--~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a---~~~~~~~~~a~~i~~~~~~~g~~ 366 (812)
+ ...++..+..++.. .+++++|+..|++.++. .|+.. .+..+..+ +...++.+.+.+.+..+++...
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~--~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p- 206 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK--KPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNP- 206 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCS-
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCC-
Confidence 1 12345444444444 45688999999888875 34433 22222222 3344556677777777766542
Q ss_pred CchhHHHHHHHHHHh----cCCHHHHHHHHhcCCC-CCCceeeeHHHHHHHHHcCChhhHHHHHHHhcccCCCCCChhh-
Q 040319 367 SNDCIEAALLDMLTR----CGRMADAEKMFYRWPT-DRDDSIIWTSMICGYARSGKPEHAILLFHQSQSEATVVPDEIA- 440 (812)
Q Consensus 367 ~~~~~~~~Li~~y~~----~g~~~~A~~~f~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t- 440 (812)
.+..++..+...+.. .|+.++|.+.|++... .+++...|..+...|...|++++|+..|.+..+ ..|+...
T Consensus 207 ~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~---~~p~~~~~ 283 (472)
T 4g1t_A 207 DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALE---YIPNNAYL 283 (472)
T ss_dssp SCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HSTTCHHH
T ss_pred cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHH---hCCChHHH
Confidence 234444444444443 4567788888876542 233456677888888888888888888888876 5565443
Q ss_pred HHHHHHHhcCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHhhhcCCHHHHHHHHccCCC---CChhHHHHHHHHHHhc
Q 040319 441 LTSVLGVCGTLGFHEMGKQIHSYALKTGFSSDLGVANSMVSMYFKCCNMSNAIKAFNKMPS---HDIVSWNGLIAGHLLH 517 (812)
Q Consensus 441 ~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~ 517 (812)
+..+...+...+.. .... ....+.......+..+.|...|++..+ .+..+|..+...|...
T Consensus 284 ~~~lg~~y~~~~~~---------~~~~-------~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~ 347 (472)
T 4g1t_A 284 HCQIGCCYRAKVFQ---------VMNL-------RENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALA 347 (472)
T ss_dssp HHHHHHHHHHHHHH---------HHHC-------------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHH---------hhhH-------HHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHh
Confidence 22222222111000 0000 000011111122345677777766543 5567889999999999
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHH----HHHHHH-HhcCCCCchHHHHHHHHHHhhhhcCccCCcchHHHHHHHHhhcCC
Q 040319 518 RQGDEALAVWSSMEKASIKPDAIT----FVLIIS-AYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGF 592 (812)
Q Consensus 518 g~~~~A~~l~~~m~~~g~~pd~~t----~~~ll~-a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~ 592 (812)
|++++|++.|++.++. .|+... +..+.. ...+ .|+.++|+..|++..+ +.|+........
T Consensus 348 ~~~~~A~~~~~kaL~~--~~~~~~~~~~~~~~~~~~~~~--~~~~~~Ai~~y~kal~---i~~~~~~~~~~~-------- 412 (472)
T 4g1t_A 348 DQYEEAEYYFQKEFSK--ELTPVAKQLLHLRYGNFQLYQ--MKCEDKAIHHFIEGVK---INQKSREKEKMK-------- 412 (472)
T ss_dssp TCHHHHHHHHHHHHHS--CCCHHHHHHHHHHHHHHHHHT--SSCHHHHHHHHHHHHH---SCCCCHHHHHHH--------
T ss_pred ccHHHHHHHHHHHHhc--CCCChHHHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHh---cCcccHHHHHHH--------
Confidence 9999999999999984 444322 222222 2335 7899999999998876 566643332222
Q ss_pred hHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHH
Q 040319 593 LEEAEETINNMP-FQP-KVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVS 650 (812)
Q Consensus 593 ~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 650 (812)
+.+..++++.. ..| ++.+|..|...+...|+.++|...+++++++.|.+|.+..-++
T Consensus 413 -~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 413 -DKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp -HHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC------------------------
T ss_pred -HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 23334444322 234 6778999999999999999999999999999999888766554
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.52 E-value=2.8e-13 Score=136.05 Aligned_cols=211 Identities=9% Similarity=-0.034 Sum_probs=167.5
Q ss_pred HHHhcCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHhhhcCCHHHHHHHHccCCC--CC--------hhHHHHHHHHH
Q 040319 445 LGVCGTLGFHEMGKQIHSYALKTGFSSDLGVANSMVSMYFKCCNMSNAIKAFNKMPS--HD--------IVSWNGLIAGH 514 (812)
Q Consensus 445 l~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~--~~--------~~~~~~li~~~ 514 (812)
...+...|+++.|...+..+++.. .+..++..+...|...|++++|...|++..+ |+ ...|..+...|
T Consensus 12 g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 89 (258)
T 3uq3_A 12 GNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAY 89 (258)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHH
Confidence 334444444455555554444444 4556667777777777888888777776554 21 57888899999
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccC-CcchHHHHHHHHhhcCCh
Q 040319 515 LLHRQGDEALAVWSSMEKASIKPDAITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEP-TSEHYASLVSVLGYWGFL 593 (812)
Q Consensus 515 ~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~li~~l~~~g~~ 593 (812)
...|++++|+..|+++.+ +.|+... +.. .|++++|...++.+.. ..| +...|..+...+.+.|++
T Consensus 90 ~~~~~~~~A~~~~~~a~~--~~~~~~~-------~~~--~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 155 (258)
T 3uq3_A 90 HKLGDLKKTIEYYQKSLT--EHRTADI-------LTK--LRNAEKELKKAEAEAY---VNPEKAEEARLEGKEYFTKSDW 155 (258)
T ss_dssp HHTTCHHHHHHHHHHHHH--HCCCHHH-------HHH--HHHHHHHHHHHHHHHH---CCHHHHHHHHHHHHHHHHTTCH
T ss_pred HHcccHHHHHHHHHHHHh--cCchhHH-------HHH--HhHHHHHHHHHHHHHH---cCcchHHHHHHHHHHHHHhcCH
Confidence 999999999999999998 6677432 344 7889999999998876 234 367888999999999999
Q ss_pred HHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCCcchHHHHHHHHHh
Q 040319 594 EEAEETINNMP-FQP-KVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWHNSELVREDMRE 671 (812)
Q Consensus 594 ~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 671 (812)
++|.+.+++.. ..| +..+|..+...+...|+.+.|...+++++++.|+++..+..++.+|...|++++|.+.+++..+
T Consensus 156 ~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 156 PNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAART 235 (258)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 99999999865 344 6888999999999999999999999999999999999999999999999999999999988754
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.46 E-value=5.5e-13 Score=135.24 Aligned_cols=247 Identities=13% Similarity=0.068 Sum_probs=134.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCCCC-CCceeeeHHHHHHHHHcCChhhHHHHHHHhcccCCCCCCh--hhHHHHHHH
Q 040319 371 IEAALLDMLTRCGRMADAEKMFYRWPTD-RDDSIIWTSMICGYARSGKPEHAILLFHQSQSEATVVPDE--IALTSVLGV 447 (812)
Q Consensus 371 ~~~~Li~~y~~~g~~~~A~~~f~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~--~t~~~ll~a 447 (812)
+.......|...|++++|...|++.... +.+...|..+...|...|++++|++.|++... .+..|+. ..+..+...
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKI 83 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHH
Confidence 3444556677777777777777765422 33345677777777777777777777777765 3222221 114444445
Q ss_pred hcCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHhhhcCCHHHHHHHHccCCC---CChhHHHHHHHHHHhcCChHHHH
Q 040319 448 CGTLGFHEMGKQIHSYALKTGFSSDLGVANSMVSMYFKCCNMSNAIKAFNKMPS---HDIVSWNGLIAGHLLHRQGDEAL 524 (812)
Q Consensus 448 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~ 524 (812)
+...|+++.|...+..+.+.. +.+..++..+...|.+.|++++|...|++..+ .+...|..+...+...+++++|+
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~ 162 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKAD 162 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555432 12334444555555555555555555544433 22333444441222223445555
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCCcchHHHHHHHHhhcCC---hHHHHHHHH
Q 040319 525 AVWSSMEKASIKPDAITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGF---LEEAEETIN 601 (812)
Q Consensus 525 ~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~---~~~A~~~~~ 601 (812)
+.|+++.+ ..|+. ...+..+..++...|+ +++|...++
T Consensus 163 ~~~~~a~~--~~p~~-------------------------------------~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 203 (272)
T 3u4t_A 163 SSFVKVLE--LKPNI-------------------------------------YIGYLWRARANAAQDPDTKQGLAKPYYE 203 (272)
T ss_dssp HHHHHHHH--HSTTC-------------------------------------HHHHHHHHHHHHHHSTTCSSCTTHHHHH
T ss_pred HHHHHHHH--hCccc-------------------------------------hHHHHHHHHHHHHcCcchhhHHHHHHHH
Confidence 55554444 33332 3334444444444444 444444444
Q ss_pred hCC----CCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCC
Q 040319 602 NMP----FQPK------VSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGR 658 (812)
Q Consensus 602 ~m~----~~p~------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~ 658 (812)
+.. ..|+ ..+|..+...+...|+.+.|...++++++++|+++.+...+..+....+.
T Consensus 204 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~ 270 (272)
T 3u4t_A 204 KLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHHH 270 (272)
T ss_dssp HHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC--------
T ss_pred HHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhccccc
Confidence 322 1122 24677778888899999999999999999999999888888777665543
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.45 E-value=1e-12 Score=133.39 Aligned_cols=240 Identities=9% Similarity=-0.105 Sum_probs=184.1
Q ss_pred cCChhhHHHHHHHhcccCCC--CC-ChhhHHHHHHHhcCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHhhhcCCHHH
Q 040319 415 SGKPEHAILLFHQSQSEATV--VP-DEIALTSVLGVCGTLGFHEMGKQIHSYALKTGFSSDLGVANSMVSMYFKCCNMSN 491 (812)
Q Consensus 415 ~g~~~~A~~~~~~m~~~~g~--~p-~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~ 491 (812)
.|++++|+..|+++.. ... .| +..++..+...+...|+++.|...+..+.+.. +.+..++..+...|.+.|++++
T Consensus 18 ~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 18 TLQQEVILARMEQILA-SRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CHHHHHHHHHHHHHHT-SSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred cchHHHHHHHHHHHHh-cccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 4667777777777776 221 11 23456666677777788888888887777754 3467788889999999999999
Q ss_pred HHHHHccCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCchHHHHHHHHHHhh
Q 040319 492 AIKAFNKMPS---HDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDAITFVLIISAYRYTNLNLVDSCRKLFLSMK 568 (812)
Q Consensus 492 A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~g~~~~a~~~~~~m~ 568 (812)
|...|+++.+ .+...|..+...|...|++++|+..|+++.+ ..|+.......+..+.. .|++++|...++...
T Consensus 96 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~~~--~~~~~~A~~~~~~~~ 171 (275)
T 1xnf_A 96 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ--DDPNDPFRSLWLYLAEQ--KLDEKQAKEVLKQHF 171 (275)
T ss_dssp HHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHH--HHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCChHHHHHHHHHHH--hcCHHHHHHHHHHHH
Confidence 9999987764 4678999999999999999999999999999 67887666656666666 899999999998777
Q ss_pred hhcCccCCcchHHHHHHHHhhcCChHHHHHHHHhCC-CCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCC
Q 040319 569 TIYNIEPTSEHYASLVSVLGYWGFLEEAEETINNMP-FQPK-----VSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQD 642 (812)
Q Consensus 569 ~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~ 642 (812)
.. .+++...+ .++..+...+..++|++.+++.. ..|+ ..+|..+...+...|+.+.|...++++++++|++
T Consensus 172 ~~--~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 248 (275)
T 1xnf_A 172 EK--SDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHN 248 (275)
T ss_dssp HH--SCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTT
T ss_pred hc--CCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchh
Confidence 63 23334444 47778888888999999998854 3332 5788889999999999999999999999999976
Q ss_pred CchHHHHHhhhhhCCCcchHHHHH
Q 040319 643 PATYILVSNLYSSSGRWHNSELVR 666 (812)
Q Consensus 643 ~~~~~~l~~~y~~~g~~~~a~~~~ 666 (812)
.. ..+.++...|++++|.+..
T Consensus 249 ~~---~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 249 FV---EHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp CH---HHHHHHHHHHHHHHC----
T ss_pred HH---HHHHHHHHHHHHHhhHHHH
Confidence 44 3467788889999887764
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.44 E-value=1.3e-12 Score=131.12 Aligned_cols=233 Identities=12% Similarity=0.009 Sum_probs=169.1
Q ss_pred eeHHHHHHHHHcCChhhHHHHHHHhcccCCCCCChhhHHHHHHHhcCccchHHHHHHHHHHHHhCCC--Cc----hhHHH
Q 040319 404 IWTSMICGYARSGKPEHAILLFHQSQSEATVVPDEIALTSVLGVCGTLGFHEMGKQIHSYALKTGFS--SD----LGVAN 477 (812)
Q Consensus 404 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~--~~----~~~~~ 477 (812)
.|..+...+...|++++|+..|++... .. ++...+..+..++...|+++.|...+..+.+.... ++ ..++.
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~-~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWE-LH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH-HS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHH-hh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 344455555556666666666655555 22 44455555555555666666666665555543211 11 56777
Q ss_pred HHHHHhhhcCCHHHHHHHHccCCC--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcCCCC
Q 040319 478 SMVSMYFKCCNMSNAIKAFNKMPS--HDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDA-ITFVLIISAYRYTNL 554 (812)
Q Consensus 478 ~Li~~y~k~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~~~ 554 (812)
.+...|.+.|++++|...|++... |+ ...+...|++++|++.++++.. ..|+. ..+..+...+.. .
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~-------~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~--~ 152 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTEHRT-------ADILTKLRNAEKELKKAEAEAY--VNPEKAEEARLEGKEYFT--K 152 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHHHH--T
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCch-------hHHHHHHhHHHHHHHHHHHHHH--cCcchHHHHHHHHHHHHH--h
Confidence 888888888999999888887654 44 2346667889999999999988 66765 556667777778 8
Q ss_pred chHHHHHHHHHHhhhhcCccCCcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHH
Q 040319 555 NLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLEEAEETINNMP-FQP-KVSVWRALLDSCRIRLNTTIGKRVA 632 (812)
Q Consensus 555 g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~ 632 (812)
|++++|...|+.+.+.. +.+...|..+..++.+.|++++|++.+++.. ..| +..+|..+...+...|+.+.|...+
T Consensus 153 ~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 230 (258)
T 3uq3_A 153 SDWPNAVKAYTEMIKRA--PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETL 230 (258)
T ss_dssp TCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 99999999999887632 2347788999999999999999999998865 445 5788999999999999999999999
Q ss_pred HHHHccC------CCCCchHHHHHhh
Q 040319 633 KHILAME------PQDPATYILVSNL 652 (812)
Q Consensus 633 ~~~~~~~------p~~~~~~~~l~~~ 652 (812)
++++++. |++...+..+..+
T Consensus 231 ~~a~~~~~~~~~~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 231 DAARTKDAEVNNGSSAREIDQLYYKA 256 (258)
T ss_dssp HHHHHHHHHHHTTTTHHHHHHHHHHT
T ss_pred HHHHHhChhhcCCCchHHHHHHHHHh
Confidence 9999998 8777766666554
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.41 E-value=4.2e-12 Score=127.06 Aligned_cols=195 Identities=10% Similarity=-0.050 Sum_probs=156.3
Q ss_pred hhHHHHHHHHhhhcCCHHHHHHHHccCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHH
Q 040319 473 LGVANSMVSMYFKCCNMSNAIKAFNKMPS---HDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPD-AITFVLIISA 548 (812)
Q Consensus 473 ~~~~~~Li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a 548 (812)
...+..+...|...|++++|...|+++.+ .+...|..+...|...|++++|++.|+++.+ ..|+ ...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALA--SDSRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCcCcHHHHHHHHHH
Confidence 45666777788888888888888877653 4567788888888888899999998888887 4453 4666677777
Q ss_pred hcCCCCchHHHHHHHHHHhhhhcCccC-CcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCH
Q 040319 549 YRYTNLNLVDSCRKLFLSMKTIYNIEP-TSEHYASLVSVLGYWGFLEEAEETINNMP-FQP-KVSVWRALLDSCRIRLNT 625 (812)
Q Consensus 549 ~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~ 625 (812)
+.. .|++++|.++|+.+.+ .+..| +...+..++.++.+.|++++|.+.+++.. ..| +..+|..+...+...|+.
T Consensus 115 ~~~--~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 191 (252)
T 2ho1_A 115 LYE--QKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREY 191 (252)
T ss_dssp HHH--TTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCH
T ss_pred HHH--HhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCH
Confidence 777 8889999998888875 33445 36678888888889999999998888754 344 577888888888899999
Q ss_pred HHHHHHHHHHHccCCCCCchHHHHHhhhhhCCCcchHHHHHHHHHhC
Q 040319 626 TIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWHNSELVREDMREK 672 (812)
Q Consensus 626 ~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 672 (812)
+.|...++++++..|+++..+..++.+|...|++++|.+.++++.+.
T Consensus 192 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 192 VPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 99999999999999988888999999999999999999998888654
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.40 E-value=5.4e-12 Score=123.55 Aligned_cols=196 Identities=12% Similarity=-0.005 Sum_probs=160.1
Q ss_pred chhHHHHHHHHhhhcCCHHHHHHHHccCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHH
Q 040319 472 DLGVANSMVSMYFKCCNMSNAIKAFNKMPS---HDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPD-AITFVLIIS 547 (812)
Q Consensus 472 ~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~ 547 (812)
+..++..+...|...|++++|...|+++.+ .+...|..+...|...|++++|++.|+++.+ ..|+ ..++..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALS--IKPDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHH--hCCCChHHHHHHHH
Confidence 456677788888888899988888887653 4567888888889999999999999999888 4554 466777777
Q ss_pred HhcCCCC-chHHHHHHHHHHhhhhcCccCC-cchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcC
Q 040319 548 AYRYTNL-NLVDSCRKLFLSMKTIYNIEPT-SEHYASLVSVLGYWGFLEEAEETINNMP-FQP-KVSVWRALLDSCRIRL 623 (812)
Q Consensus 548 a~~~~~~-g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~ 623 (812)
.+.. . |++++|..+|+.+.+ .+..|+ ...|..+..++.+.|++++|++.++++. ..| +...|..+...+...|
T Consensus 85 ~~~~--~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 161 (225)
T 2vq2_A 85 FLCG--RLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAG 161 (225)
T ss_dssp HHHT--TTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHT
T ss_pred HHHH--hcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcC
Confidence 7777 8 999999999998876 333343 5778888899999999999999988764 344 5778888888899999
Q ss_pred CHHHHHHHHHHHHccCC-CCCchHHHHHhhhhhCCCcchHHHHHHHHHhC
Q 040319 624 NTTIGKRVAKHILAMEP-QDPATYILVSNLYSSSGRWHNSELVREDMREK 672 (812)
Q Consensus 624 ~~~~a~~~~~~~~~~~p-~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 672 (812)
+.+.|...++++++..| +++..+..++.++...|+.++|..+++.+.+.
T Consensus 162 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 162 QLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp CHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 99999999999999999 88888989999999999999999998887643
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.36 E-value=3.8e-12 Score=126.50 Aligned_cols=195 Identities=9% Similarity=0.003 Sum_probs=137.3
Q ss_pred chhHHHHHHHHhhhcCCHHHHHHHHccCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHH
Q 040319 472 DLGVANSMVSMYFKCCNMSNAIKAFNKMPS---HDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPD-AITFVLIIS 547 (812)
Q Consensus 472 ~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~ 547 (812)
....+..+...|.+.|++++|...|+++.+ .+...|..+...|...|++++|++.|+++.+ ..|+ ...+..+..
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~la~ 99 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALE--LDSSAATAYYGAGN 99 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCcchHHHHHHHH
Confidence 455566677778888888888888776643 4567778888888888888888888888887 4454 466666667
Q ss_pred HhcCCCCchHHHHHHHHHHhhhhcCccCCcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCH
Q 040319 548 AYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLEEAEETINNMP-FQP-KVSVWRALLDSCRIRLNT 625 (812)
Q Consensus 548 a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~ 625 (812)
.+.. .|++++|.++|+.+.+.. +.+...+..++.++.+.|++++|.+.++++. ..| +..+|..+...+...|+.
T Consensus 100 ~~~~--~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 175 (243)
T 2q7f_A 100 VYVV--KEMYKEAKDMFEKALRAG--MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGML 175 (243)
T ss_dssp HHHH--TTCHHHHHHHHHHHHHHT--CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCC
T ss_pred HHHH--hccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCH
Confidence 7777 888888888888877621 2346678888888888888888888888754 333 677888888888888888
Q ss_pred HHHHHHHHHHHccCCCCCchHHHHHhhhhhCCCcchHHHHHHHHHhC
Q 040319 626 TIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWHNSELVREDMREK 672 (812)
Q Consensus 626 ~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 672 (812)
+.|...++++++..|+++..+..++.+|...|++++|.+.++++.+.
T Consensus 176 ~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 176 DEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 99998888888888888888888899999999999998888887553
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.36 E-value=8.2e-12 Score=132.11 Aligned_cols=243 Identities=9% Similarity=0.004 Sum_probs=183.7
Q ss_pred eeeHHHHHHHHHcCChhhHHHHHHHhcccCCCCCChh-hHHHHHHHhcCccc-hHHHHHHHHHHHHhCCCCchhHHHHHH
Q 040319 403 IIWTSMICGYARSGKPEHAILLFHQSQSEATVVPDEI-ALTSVLGVCGTLGF-HEMGKQIHSYALKTGFSSDLGVANSMV 480 (812)
Q Consensus 403 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~-t~~~ll~a~~~~~~-~~~a~~~~~~~~~~g~~~~~~~~~~Li 480 (812)
..|+.+...+.+.|++++|+..|++... +.|+.. .|..+-.++...|. +++|...+..+++.. +.+..+|..+.
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~---l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g 173 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIE---LNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRR 173 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHH---hCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHH
Confidence 4566666777777888888888877776 556543 45556666677775 788888777777754 33677888888
Q ss_pred HHhhhcCCHHHHHHHHccCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcCCCCch
Q 040319 481 SMYFKCCNMSNAIKAFNKMPS---HDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDA-ITFVLIISAYRYTNLNL 556 (812)
Q Consensus 481 ~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~~~g~ 556 (812)
.+|.+.|++++|...|+++.+ .+...|..+...+...|++++|+..|+++++ +.|+. ..|..+..++... .|.
T Consensus 174 ~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~--l~P~~~~a~~~lg~~l~~l-~~~ 250 (382)
T 2h6f_A 174 VLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLK--EDVRNNSVWNQRYFVISNT-TGY 250 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH--HCTTCHHHHHHHHHHHHHT-TCS
T ss_pred HHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHh-cCc
Confidence 889999999999999987764 5678899999999999999999999999998 67765 5566665555440 233
Q ss_pred HHHH-----HHHHHHhhhhcCccCC-cchHHHHHHHHhhcC--ChHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcC----
Q 040319 557 VDSC-----RKLFLSMKTIYNIEPT-SEHYASLVSVLGYWG--FLEEAEETINNMPFQP-KVSVWRALLDSCRIRL---- 623 (812)
Q Consensus 557 ~~~a-----~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g--~~~~A~~~~~~m~~~p-~~~~~~~ll~~~~~~~---- 623 (812)
.++| ++.|+...+ +.|+ ...|..+..+|.+.| ++++|++.++++...| +..++..+...+...|
T Consensus 251 ~~eA~~~~el~~~~~Al~---l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~ 327 (382)
T 2h6f_A 251 NDRAVLEREVQYTLEMIK---LVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQC 327 (382)
T ss_dssp CSHHHHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTC
T ss_pred chHHHHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccc
Confidence 3555 577777765 4565 678888888898888 6899999988876555 4677888888887763
Q ss_pred -----CHHHHHHHHHHH-HccCCCCCchHHHHHhhhhh
Q 040319 624 -----NTTIGKRVAKHI-LAMEPQDPATYILVSNLYSS 655 (812)
Q Consensus 624 -----~~~~a~~~~~~~-~~~~p~~~~~~~~l~~~y~~ 655 (812)
..++|..+++++ .+++|.....|..++..+..
T Consensus 328 ~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 328 DNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQS 365 (382)
T ss_dssp SSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH
Confidence 358999999999 99999988888888776653
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.34 E-value=4.3e-12 Score=139.61 Aligned_cols=191 Identities=9% Similarity=-0.046 Sum_probs=168.2
Q ss_pred CchhHHHHHHHHhhhcCCH-HHHHHHHccCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 040319 471 SDLGVANSMVSMYFKCCNM-SNAIKAFNKMPS---HDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDAITFVLII 546 (812)
Q Consensus 471 ~~~~~~~~Li~~y~k~g~~-~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll 546 (812)
.+...+..+...|...|++ ++|...|++..+ .+...|..+...|...|++++|++.|++.++ +.|+...+..+.
T Consensus 100 ~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~lg 177 (474)
T 4abn_A 100 VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALT--HCKNKVSLQNLS 177 (474)
T ss_dssp CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCCCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCHHHHHHHH
Confidence 4677788888888889999 999988887654 4578899999999999999999999999999 678888888888
Q ss_pred HHhcCCCC---------chHHHHHHHHHHhhhhcCccCC-cchHHHHHHHHhhc--------CChHHHHHHHHhCC-CCC
Q 040319 547 SAYRYTNL---------NLVDSCRKLFLSMKTIYNIEPT-SEHYASLVSVLGYW--------GFLEEAEETINNMP-FQP 607 (812)
Q Consensus 547 ~a~~~~~~---------g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~--------g~~~~A~~~~~~m~-~~p 607 (812)
.++.. . |++++|.+.|++..+ +.|+ ...|..+..+|... |++++|++.+++.. ..|
T Consensus 178 ~~~~~--~~~~~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p 252 (474)
T 4abn_A 178 MVLRQ--LQTDSGDEHSRHVMDSVRQAKLAVQ---MDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDR 252 (474)
T ss_dssp HHHTT--CCCSCHHHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCG
T ss_pred HHHHH--hccCChhhhhhhHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCC
Confidence 88888 8 999999999999887 3454 78899999999998 99999999999865 456
Q ss_pred ----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCCcchHHHHHHH
Q 040319 608 ----KVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWHNSELVRED 668 (812)
Q Consensus 608 ----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~ 668 (812)
+...|..+..++...|++++|...++++++++|+++.++..++.+|...|++++|.+...+
T Consensus 253 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 253 KASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp GGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred CcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 6889999999999999999999999999999999999999999999999999999875543
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.33 E-value=5.3e-11 Score=118.96 Aligned_cols=205 Identities=9% Similarity=0.033 Sum_probs=152.7
Q ss_pred eeeeHHHHHHHHHcCChhhHHHHHHHhcccCCCCCChhhHHHHHHHhcCccchHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 040319 402 SIIWTSMICGYARSGKPEHAILLFHQSQSEATVVPDEIALTSVLGVCGTLGFHEMGKQIHSYALKTGFSSDLGVANSMVS 481 (812)
Q Consensus 402 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~ 481 (812)
...|..+...+...|++++|++.|+++.. ..| .+..++..+..
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~---~~~----------------------------------~~~~~~~~la~ 79 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALE---IDP----------------------------------SSADAHAALAV 79 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHH---HCT----------------------------------TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHh---cCC----------------------------------ChHHHHHHHHH
Confidence 44566667777777777777777777665 122 23445566667
Q ss_pred HhhhcCCHHHHHHHHccCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcCCCCchH
Q 040319 482 MYFKCCNMSNAIKAFNKMPS---HDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDA-ITFVLIISAYRYTNLNLV 557 (812)
Q Consensus 482 ~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~~~g~~ 557 (812)
.|.+.|++++|...|+++.+ .+...|..+...|...|++++|++.|+++.+.+..|+. ..+..+...+.. .|++
T Consensus 80 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~--~g~~ 157 (252)
T 2ho1_A 80 VFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQ--MKKP 157 (252)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHH--TTCH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHH--cCCH
Confidence 77777777777777766543 35667777888888888888888888888774455654 556666667777 8888
Q ss_pred HHHHHHHHHhhhhcCccC-CcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 040319 558 DSCRKLFLSMKTIYNIEP-TSEHYASLVSVLGYWGFLEEAEETINNMP-FQP-KVSVWRALLDSCRIRLNTTIGKRVAKH 634 (812)
Q Consensus 558 ~~a~~~~~~m~~~~~~~p-~~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~ 634 (812)
++|.++|+.+.+. .| +...+..++.++.+.|++++|.+.++++. ..| +...|..+...+...|+.+.|...+++
T Consensus 158 ~~A~~~~~~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 234 (252)
T 2ho1_A 158 AQAKEYFEKSLRL---NRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQ 234 (252)
T ss_dssp HHHHHHHHHHHHH---CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc---CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 8888888887762 34 36778888899999999999999988854 344 567788888889999999999999999
Q ss_pred HHccCCCCCchHHH
Q 040319 635 ILAMEPQDPATYIL 648 (812)
Q Consensus 635 ~~~~~p~~~~~~~~ 648 (812)
++++.|+++.....
T Consensus 235 ~~~~~p~~~~~~~~ 248 (252)
T 2ho1_A 235 LKRLYPGSLEYQEF 248 (252)
T ss_dssp HHHHCTTSHHHHHH
T ss_pred HHHHCCCCHHHHHH
Confidence 99999987765543
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.33 E-value=7.9e-12 Score=124.12 Aligned_cols=213 Identities=11% Similarity=0.054 Sum_probs=144.9
Q ss_pred eeeeHHHHHHHHHcCChhhHHHHHHHhcccCCCCCChhhHHHHHHHhcCccchHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 040319 402 SIIWTSMICGYARSGKPEHAILLFHQSQSEATVVPDEIALTSVLGVCGTLGFHEMGKQIHSYALKTGFSSDLGVANSMVS 481 (812)
Q Consensus 402 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~ 481 (812)
...|..+...+...|++++|+..|+++.. ..| .+..++..+..
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~---~~~----------------------------------~~~~~~~~la~ 65 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIE---ENK----------------------------------EDAIPYINFAN 65 (243)
T ss_dssp -------------------CCTTHHHHHT---TCT----------------------------------TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHH---hCc----------------------------------ccHHHHHHHHH
Confidence 45566777777777888888877777765 222 23445555666
Q ss_pred HhhhcCCHHHHHHHHccCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhcCCCCchH
Q 040319 482 MYFKCCNMSNAIKAFNKMPS---HDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKP-DAITFVLIISAYRYTNLNLV 557 (812)
Q Consensus 482 ~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~ll~a~~~~~~g~~ 557 (812)
.|.+.|++++|...|+++.+ .+...|..+...|...|++++|++.|+++.+ ..| +...+..+...+.. .|++
T Consensus 66 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~a~~~~~--~~~~ 141 (243)
T 2q7f_A 66 LLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALR--AGMENGDLFYMLGTVLVK--LEQP 141 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HTCCSHHHHHHHHHHHHH--TSCH
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHH--hccH
Confidence 67777777777777766543 4567778888888888888888888888887 445 34566667777777 8889
Q ss_pred HHHHHHHHHhhhhcCccCCcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 040319 558 DSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLEEAEETINNMP-FQP-KVSVWRALLDSCRIRLNTTIGKRVAKHI 635 (812)
Q Consensus 558 ~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 635 (812)
++|..+++.+.+.. +.+...+..++.++.+.|++++|++.++++. ..| +..+|..+...+...|+.+.|...++++
T Consensus 142 ~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 219 (243)
T 2q7f_A 142 KLALPYLQRAVELN--ENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKA 219 (243)
T ss_dssp HHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC--CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 99999888887621 2346788889999999999999999998864 334 6778999999999999999999999999
Q ss_pred HccCCCCCchHHHHHhhhhhCC
Q 040319 636 LAMEPQDPATYILVSNLYSSSG 657 (812)
Q Consensus 636 ~~~~p~~~~~~~~l~~~y~~~g 657 (812)
++++|+++..+..++.+....|
T Consensus 220 ~~~~p~~~~~~~~~~~l~~~~~ 241 (243)
T 2q7f_A 220 IDIQPDHMLALHAKKLLGHHHH 241 (243)
T ss_dssp HHHCTTCHHHHHHHTC------
T ss_pred HccCcchHHHHHHHHHHHhhcc
Confidence 9999999988888877665544
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.33 E-value=3.1e-11 Score=114.17 Aligned_cols=162 Identities=11% Similarity=0.069 Sum_probs=127.1
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccC-CcchH
Q 040319 503 DIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDA-ITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEP-TSEHY 580 (812)
Q Consensus 503 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y 580 (812)
+...|..+...|...|++++|++.|++.++ +.|+. .++..+..++.. .|++++|...++.... ..| +...+
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~--~~~~~~a~~~~~~~~~---~~~~~~~~~ 76 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLK--ADPNNVETLLKLGKTYMD--IGLPNDAIESLKKFVV---LDTTSAEAY 76 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHH---HCCCCHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHh---cCchhHHHH
Confidence 456677777888888888888888888877 56765 556666667777 7888888888877765 233 35666
Q ss_pred HHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCC
Q 040319 581 ASLVSVLGYWGFLEEAEETINNMP-FQP-KVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGR 658 (812)
Q Consensus 581 ~~li~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~ 658 (812)
..+...+...+++++|.+.+++.. ..| +..+|..+...+...|+.++|+..++++++++|+++.++..++.+|.+.|+
T Consensus 77 ~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~ 156 (184)
T 3vtx_A 77 YILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGL 156 (184)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCC
Confidence 777777888888888888877754 344 577888888888899999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHh
Q 040319 659 WHNSELVREDMRE 671 (812)
Q Consensus 659 ~~~a~~~~~~m~~ 671 (812)
+++|.+.+++.-+
T Consensus 157 ~~~A~~~~~~al~ 169 (184)
T 3vtx_A 157 RDEAVKYFKKALE 169 (184)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999888754
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.33 E-value=5.3e-11 Score=116.36 Aligned_cols=207 Identities=12% Similarity=-0.017 Sum_probs=153.7
Q ss_pred eeeeHHHHHHHHHcCChhhHHHHHHHhcccCCCCCChhhHHHHHHHhcCccchHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 040319 402 SIIWTSMICGYARSGKPEHAILLFHQSQSEATVVPDEIALTSVLGVCGTLGFHEMGKQIHSYALKTGFSSDLGVANSMVS 481 (812)
Q Consensus 402 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~ 481 (812)
...|..+...+...|++++|++.|+++.. ..| .+..++..+..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~---~~~----------------------------------~~~~~~~~l~~ 50 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALK---SDP----------------------------------KNELAWLVRAE 50 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCT----------------------------------TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHH---hCc----------------------------------cchHHHHHHHH
Confidence 44556666666666666666666666554 222 23445666777
Q ss_pred HhhhcCCHHHHHHHHccCCC---CChhHHHHHHHHHHhc-CChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcCCCCch
Q 040319 482 MYFKCCNMSNAIKAFNKMPS---HDIVSWNGLIAGHLLH-RQGDEALAVWSSMEKASIKPDA-ITFVLIISAYRYTNLNL 556 (812)
Q Consensus 482 ~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~-g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~~~g~ 556 (812)
.|...|++++|...|+++.+ .+...|..+...|... |++++|+..|+++.+.+..|+. ..+..+..++.. .|+
T Consensus 51 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~ 128 (225)
T 2vq2_A 51 IYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAK--QGQ 128 (225)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHH--TTC
T ss_pred HHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHH--cCC
Confidence 77777777777777776543 4567788888888888 8999999999988884445554 566667777777 899
Q ss_pred HHHHHHHHHHhhhhcCccCC-cchHHHHHHHHhhcCChHHHHHHHHhCC-CC--CCHHHHHHHHHHHHhcCCHHHHHHHH
Q 040319 557 VDSCRKLFLSMKTIYNIEPT-SEHYASLVSVLGYWGFLEEAEETINNMP-FQ--PKVSVWRALLDSCRIRLNTTIGKRVA 632 (812)
Q Consensus 557 ~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~--p~~~~~~~ll~~~~~~~~~~~a~~~~ 632 (812)
+++|...|+.+.+. .|+ ...+..++.++.+.|++++|.+.++++. .. .+...|..+...+...|+.+.+...+
T Consensus 129 ~~~A~~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 205 (225)
T 2vq2_A 129 FGLAEAYLKRSLAA---QPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYE 205 (225)
T ss_dssp HHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHh---CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 99999999888762 343 7788889999999999999999988864 33 45667777777788999999999999
Q ss_pred HHHHccCCCCCchHHHHH
Q 040319 633 KHILAMEPQDPATYILVS 650 (812)
Q Consensus 633 ~~~~~~~p~~~~~~~~l~ 650 (812)
+.+.+..|+++.....+.
T Consensus 206 ~~~~~~~p~~~~~~~~l~ 223 (225)
T 2vq2_A 206 AQLQANFPYSEELQTVLT 223 (225)
T ss_dssp HHHHHHCTTCHHHHHHHC
T ss_pred HHHHHhCCCCHHHHHHhc
Confidence 999999999887766553
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.31 E-value=7.7e-11 Score=128.71 Aligned_cols=189 Identities=11% Similarity=-0.008 Sum_probs=135.7
Q ss_pred chhHHHHHHHHhhhcC---CHHHHHHHHccCCC---CChhHHHHHHHHHHhc----CChHHHHHHHHHHHHCCCCCCHHH
Q 040319 472 DLGVANSMVSMYFKCC---NMSNAIKAFNKMPS---HDIVSWNGLIAGHLLH----RQGDEALAVWSSMEKASIKPDAIT 541 (812)
Q Consensus 472 ~~~~~~~Li~~y~k~g---~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~----g~~~~A~~l~~~m~~~g~~pd~~t 541 (812)
++..+..|..+|.+.| +.++|...|++..+ ++...+..|...|... +++++|++.|++.. .| +...
T Consensus 175 ~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g---~~~a 250 (452)
T 3e4b_A 175 TDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PG---YPAS 250 (452)
T ss_dssp CTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG---STHH
T ss_pred CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC---CHHH
Confidence 3346677777777777 77778777776543 3444446666666544 67888888888876 32 2233
Q ss_pred HHHHHHH-h--cCCCCchHHHHHHHHHHhhhhcCccCCcchHHHHHHHHhhcC-----ChHHHHHHHHhCCCCCCHHHHH
Q 040319 542 FVLIISA-Y--RYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWG-----FLEEAEETINNMPFQPKVSVWR 613 (812)
Q Consensus 542 ~~~ll~a-~--~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g-----~~~~A~~~~~~m~~~p~~~~~~ 613 (812)
+..+-.. + .. .|+.++|.++|+...+ .| +...+..|..+|. .| ++++|++.+++.. ..++..+.
T Consensus 251 ~~~Lg~~~~~~~~--~~d~~~A~~~~~~Aa~-~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g~~~A~~ 322 (452)
T 3e4b_A 251 WVSLAQLLYDFPE--LGDVEQMMKYLDNGRA-AD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GREVAADY 322 (452)
T ss_dssp HHHHHHHHHHSGG--GCCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TTCHHHHH
T ss_pred HHHHHHHHHhCCC--CCCHHHHHHHHHHHHH-CC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CCCHHHHH
Confidence 3333333 2 34 6888899998888775 22 5667777777776 55 8999999999987 55777777
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhh----CCCcchHHHHHHHHHhCCC
Q 040319 614 ALLDSCRI----RLNTTIGKRVAKHILAMEPQDPATYILVSNLYSS----SGRWHNSELVREDMREKGF 674 (812)
Q Consensus 614 ~ll~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~----~g~~~~a~~~~~~m~~~g~ 674 (812)
.|...|.. ..|.++|...++++.+. .++.+...|+.+|.. ..+.++|..++++..+.|.
T Consensus 323 ~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~ 389 (452)
T 3e4b_A 323 YLGQIYRRGYLGKVYPQKALDHLLTAARN--GQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDT 389 (452)
T ss_dssp HHHHHHHTTTTSSCCHHHHHHHHHHHHTT--TCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHCCCCCCcCHHHHHHHHHHHHhh--ChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCC
Confidence 77766665 34999999999998874 567889999999985 4588899999998877664
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.31 E-value=1.1e-11 Score=131.29 Aligned_cols=221 Identities=10% Similarity=0.024 Sum_probs=189.3
Q ss_pred hHHHHHHHhcCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHhhhcCC-HHHHHHHHccCCC---CChhHHHHHHHHHH
Q 040319 440 ALTSVLGVCGTLGFHEMGKQIHSYALKTGFSSDLGVANSMVSMYFKCCN-MSNAIKAFNKMPS---HDIVSWNGLIAGHL 515 (812)
Q Consensus 440 t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~-~~~A~~~f~~~~~---~~~~~~~~li~~~~ 515 (812)
.+..+-..+...|+++.|...+..+++.. +.+..+|+.+...|.+.|+ +++|...|+++.. .+...|+.+...|.
T Consensus 99 a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~ 177 (382)
T 2h6f_A 99 VYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVE 177 (382)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 45556667788899999999999999865 3467889999999999997 9999999998765 56789999999999
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCC-cchHHHHHHHHhh-cCC
Q 040319 516 LHRQGDEALAVWSSMEKASIKPDA-ITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPT-SEHYASLVSVLGY-WGF 592 (812)
Q Consensus 516 ~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~-~g~ 592 (812)
..|++++|+..|+++++ +.|+. ..|..+..++.. .|++++|+..|+.+.+ +.|+ ...|+.+..+|.+ .|.
T Consensus 178 ~~g~~~eAl~~~~kal~--ldP~~~~a~~~lg~~~~~--~g~~~eAl~~~~~al~---l~P~~~~a~~~lg~~l~~l~~~ 250 (382)
T 2h6f_A 178 WLRDPSQELEFIADILN--QDAKNYHAWQHRQWVIQE--FKLWDNELQYVDQLLK---EDVRNNSVWNQRYFVISNTTGY 250 (382)
T ss_dssp HHTCCTTHHHHHHHHHH--HCTTCHHHHHHHHHHHHH--HTCCTTHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCS
T ss_pred HccCHHHHHHHHHHHHH--hCccCHHHHHHHHHHHHH--cCChHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHhcCc
Confidence 99999999999999999 77866 677778778888 9999999999999987 4564 7889999999999 677
Q ss_pred hHHH-----HHHHHhCC-CCC-CHHHHHHHHHHHHhcC--CHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCC------
Q 040319 593 LEEA-----EETINNMP-FQP-KVSVWRALLDSCRIRL--NTTIGKRVAKHILAMEPQDPATYILVSNLYSSSG------ 657 (812)
Q Consensus 593 ~~~A-----~~~~~~m~-~~p-~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g------ 657 (812)
.++| ++.+++.. +.| +...|..+...+...| +.+.|...++++ +.+|+++.++..|+++|.+.|
T Consensus 251 ~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~ 329 (382)
T 2h6f_A 251 NDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDN 329 (382)
T ss_dssp CSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSS
T ss_pred chHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccc
Confidence 6888 47777754 566 6789999999888887 689999999998 999999999999999999985
Q ss_pred ---CcchHHHHHHHH
Q 040319 658 ---RWHNSELVREDM 669 (812)
Q Consensus 658 ---~~~~a~~~~~~m 669 (812)
.+++|.++++++
T Consensus 330 ~~~~~~~A~~~~~~l 344 (382)
T 2h6f_A 330 KEDILNKALELCEIL 344 (382)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH
Confidence 358999999987
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.30 E-value=2.2e-11 Score=123.48 Aligned_cols=217 Identities=11% Similarity=-0.043 Sum_probs=180.1
Q ss_pred hcCccchHHHHHHHHHHHHhCCC---CchhHHHHHHHHhhhcCCHHHHHHHHccCCC---CChhHHHHHHHHHHhcCChH
Q 040319 448 CGTLGFHEMGKQIHSYALKTGFS---SDLGVANSMVSMYFKCCNMSNAIKAFNKMPS---HDIVSWNGLIAGHLLHRQGD 521 (812)
Q Consensus 448 ~~~~~~~~~a~~~~~~~~~~g~~---~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~ 521 (812)
....++++.|...+..+++.... .+..++..+...|...|++++|...|+++.+ .+...|..+...|...|+++
T Consensus 15 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 15 LQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHH
T ss_pred cCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHH
Confidence 34568899999999999886421 2567888899999999999999999998754 46789999999999999999
Q ss_pred HHHHHHHHHHHCCCCCC-HHHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCCcchHHHHHHHHhhcCChHHHHHHH
Q 040319 522 EALAVWSSMEKASIKPD-AITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLEEAEETI 600 (812)
Q Consensus 522 ~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~ 600 (812)
+|++.|+++++ ..|+ ...+..+...+.. .|++++|.++|+.+.+ +.|+...+..+...+.+.|++++|...+
T Consensus 95 ~A~~~~~~al~--~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 167 (275)
T 1xnf_A 95 AAYEAFDSVLE--LDPTYNYAHLNRGIALYY--GGRDKLAQDDLLAFYQ---DDPNDPFRSLWLYLAEQKLDEKQAKEVL 167 (275)
T ss_dssp HHHHHHHHHHH--HCTTCTHHHHHHHHHHHH--TTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHh--cCccccHHHHHHHHHHHH--hccHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHhcCHHHHHHHH
Confidence 99999999999 5665 5778888888888 9999999999999987 4576666666666778889999999999
Q ss_pred HhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCC----CCchHHHHHhhhhhCCCcchHHHHHHHHHhC
Q 040319 601 NNMP--FQPKVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQ----DPATYILVSNLYSSSGRWHNSELVREDMREK 672 (812)
Q Consensus 601 ~~m~--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 672 (812)
++.. .+++...|. ++..+...++.+.|...++++++..|. ++..+..++.+|...|++++|.+.+++..+.
T Consensus 168 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 244 (275)
T 1xnf_A 168 KQHFEKSDKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 244 (275)
T ss_dssp HHHHHHSCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHhcCCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 7643 334444444 677777888999999999999988774 3688999999999999999999999998654
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.29 E-value=8.1e-11 Score=119.10 Aligned_cols=226 Identities=8% Similarity=-0.058 Sum_probs=166.1
Q ss_pred HHHHHHHHhccchhhhhHHHHHhhHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCCcee----eeHHHHHH
Q 040319 336 TLTSVVNACGLIMEAKLSEQIHGFVMKFGLGSNDCIEAALLDMLTRCGRMADAEKMFYRWPTDRDDSI----IWTSMICG 411 (812)
Q Consensus 336 t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~----~~~~li~~ 411 (812)
.+...-..+...|+++.|...+..+++... .+..++..+...|...|++++|...|++....+++.. +|..+...
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKY-NSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTC-CCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 344455667889999999999999988643 3455788888999999999999999988763222222 37888999
Q ss_pred HHHcCChhhHHHHHHHhcccCCCCCCh-hhHHHHHHHhcCccchHHHHHHHHHHHHhCCCCchhHHHHHH-HHhhhcCCH
Q 040319 412 YARSGKPEHAILLFHQSQSEATVVPDE-IALTSVLGVCGTLGFHEMGKQIHSYALKTGFSSDLGVANSMV-SMYFKCCNM 489 (812)
Q Consensus 412 ~~~~g~~~~A~~~~~~m~~~~g~~p~~-~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li-~~y~k~g~~ 489 (812)
|...|++++|++.|++... ..|+. ..+..+...+...|+++.|...+..+++.. +.+..++..+. ..|.+ +++
T Consensus 84 ~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~-~~~ 158 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVD---RDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYN-KEY 158 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHH---HSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHT-TCH
T ss_pred HHHcccHHHHHHHHHHHHh---cCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHH-HHH
Confidence 9999999999999999987 44443 577788889999999999999999888753 44667777777 55554 599
Q ss_pred HHHHHHHccCCC---CChhHHHHHHHHHHhcCC---hHHHHHHHHHHHHCC-CCCCH------HHHHHHHHHhcCCCCch
Q 040319 490 SNAIKAFNKMPS---HDIVSWNGLIAGHLLHRQ---GDEALAVWSSMEKAS-IKPDA------ITFVLIISAYRYTNLNL 556 (812)
Q Consensus 490 ~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~---~~~A~~l~~~m~~~g-~~pd~------~t~~~ll~a~~~~~~g~ 556 (812)
++|...|+++.+ .+...|..+...+...|+ +++|+..|++..+.. -.|+. .++..+...+.. .|+
T Consensus 159 ~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~ 236 (272)
T 3u4t_A 159 VKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTI--NRD 236 (272)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHH--TTC
T ss_pred HHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHH--cCC
Confidence 999999998765 346778888888888888 788888888887721 11331 233334444444 455
Q ss_pred HHHHHHHHHHhhh
Q 040319 557 VDSCRKLFLSMKT 569 (812)
Q Consensus 557 ~~~a~~~~~~m~~ 569 (812)
+++|.++|+...+
T Consensus 237 ~~~A~~~~~~al~ 249 (272)
T 3u4t_A 237 KVKADAAWKNILA 249 (272)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 5555555554443
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.29 E-value=8.1e-12 Score=135.19 Aligned_cols=197 Identities=10% Similarity=-0.024 Sum_probs=139.1
Q ss_pred hhHHHHHHHHhhhcCCHHHHHHHHccCCC---------CChhHHHHHHHHHHhcCC-----------------hHHHHHH
Q 040319 473 LGVANSMVSMYFKCCNMSNAIKAFNKMPS---------HDIVSWNGLIAGHLLHRQ-----------------GDEALAV 526 (812)
Q Consensus 473 ~~~~~~Li~~y~k~g~~~~A~~~f~~~~~---------~~~~~~~~li~~~~~~g~-----------------~~~A~~l 526 (812)
..++..+...|...|++++|...|++..+ ....+|..+...|...|+ +++|++.
T Consensus 126 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~ 205 (411)
T 4a1s_A 126 AKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEF 205 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHH
Confidence 34556667777777777777777765433 123467777777888888 7888887
Q ss_pred HHHHHHC----CCCCCH-HHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCC----cchHHHHHHHHhhcCChHHHH
Q 040319 527 WSSMEKA----SIKPDA-ITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPT----SEHYASLVSVLGYWGFLEEAE 597 (812)
Q Consensus 527 ~~~m~~~----g~~pd~-~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~y~~li~~l~~~g~~~~A~ 597 (812)
+++..+. +-.|.. .++..+...+.. .|++++|.++|+...+...-.++ ...+..+..+|...|++++|.
T Consensus 206 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 283 (411)
T 4a1s_A 206 YQENLKLMRDLGDRGAQGRACGNLGNTYYL--LGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAA 283 (411)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHH--cCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHH
Confidence 7776542 111222 355666667777 88888888888877652211112 237788888889999999998
Q ss_pred HHHHhCC-CC---C----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCC------CchHHHHHhhhhhCCCcchHH
Q 040319 598 ETINNMP-FQ---P----KVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQD------PATYILVSNLYSSSGRWHNSE 663 (812)
Q Consensus 598 ~~~~~m~-~~---p----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~y~~~g~~~~a~ 663 (812)
+.+++.. .. + ...++..+...+...|+.+.|...+++++++.++. ...+..++.+|...|++++|.
T Consensus 284 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 363 (411)
T 4a1s_A 284 EHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERAL 363 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHH
Confidence 8887753 11 1 14577778888889999999999999998875543 347888999999999999999
Q ss_pred HHHHHHHh
Q 040319 664 LVREDMRE 671 (812)
Q Consensus 664 ~~~~~m~~ 671 (812)
+.+++..+
T Consensus 364 ~~~~~al~ 371 (411)
T 4a1s_A 364 KYAEQHLQ 371 (411)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99888744
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=2.8e-11 Score=138.45 Aligned_cols=161 Identities=13% Similarity=0.127 Sum_probs=136.3
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCC-cchHH
Q 040319 504 IVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDA-ITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPT-SEHYA 581 (812)
Q Consensus 504 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~ 581 (812)
..+|+.|...|.+.|++++|++.|++.++ +.|+. .++..+..++.. .|++++|++.|++..+ +.|+ ...|.
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~--l~P~~~~a~~nLg~~l~~--~g~~~eA~~~~~~Al~---l~P~~~~a~~ 81 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALE--VFPEFAAAHSNLASVLQQ--QGKLQEALMHYKEAIR---ISPTFADAYS 81 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHH---HCTTCHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHH---hCCCCHHHHH
Confidence 45778888888888888888888888888 67775 667777778877 8888888888888876 4565 67888
Q ss_pred HHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCCc
Q 040319 582 SLVSVLGYWGFLEEAEETINNMP-FQP-KVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRW 659 (812)
Q Consensus 582 ~li~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~ 659 (812)
.+..+|.+.|++++|++.+++.. +.| +...|..+..++...|++++|+..++++++++|+++.++..|+.+|...|+|
T Consensus 82 nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~ 161 (723)
T 4gyw_A 82 NMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDW 161 (723)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccH
Confidence 88889999999999998888854 566 5778999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHh
Q 040319 660 HNSELVREDMRE 671 (812)
Q Consensus 660 ~~a~~~~~~m~~ 671 (812)
++|.+.+++..+
T Consensus 162 ~~A~~~~~kal~ 173 (723)
T 4gyw_A 162 TDYDERMKKLVS 173 (723)
T ss_dssp TTHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999988877643
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.27 E-value=1.6e-11 Score=132.34 Aligned_cols=197 Identities=12% Similarity=0.013 Sum_probs=135.4
Q ss_pred hhHHHHHHHHhhhcCCHHHHHHHHccCCC-----CC----hhHHHHHHHHHHhcCC--------------------hHHH
Q 040319 473 LGVANSMVSMYFKCCNMSNAIKAFNKMPS-----HD----IVSWNGLIAGHLLHRQ--------------------GDEA 523 (812)
Q Consensus 473 ~~~~~~Li~~y~k~g~~~~A~~~f~~~~~-----~~----~~~~~~li~~~~~~g~--------------------~~~A 523 (812)
..++..+...|...|++++|...|++..+ ++ ..+|..+...|...|+ +++|
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A 166 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAA 166 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHH
Confidence 34556666777777777777777665543 22 3467777777777788 7888
Q ss_pred HHHHHHHHHC----CCCCCH-HHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCC----cchHHHHHHHHhhcCChH
Q 040319 524 LAVWSSMEKA----SIKPDA-ITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPT----SEHYASLVSVLGYWGFLE 594 (812)
Q Consensus 524 ~~l~~~m~~~----g~~pd~-~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~y~~li~~l~~~g~~~ 594 (812)
++.+++..+. +-.|.. .++..+...+.. .|++++|..+|+...+...-.++ ...|..+..+|...|+++
T Consensus 167 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 244 (406)
T 3sf4_A 167 VDFYEENLSLVTALGDRAAQGRAFGNLGNTHYL--LGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFE 244 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH--HTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHH--ccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChH
Confidence 8777776541 112222 345666666777 78888888888877652211122 337778888888888888
Q ss_pred HHHHHHHhCC-C---CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCC------CchHHHHHhhhhhCCCcc
Q 040319 595 EAEETINNMP-F---QPK----VSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQD------PATYILVSNLYSSSGRWH 660 (812)
Q Consensus 595 ~A~~~~~~m~-~---~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~y~~~g~~~ 660 (812)
+|.+.+++.. . .++ ..++..+...+...|+++.|...+++++++.|.. ...+..++.+|...|+++
T Consensus 245 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 324 (406)
T 3sf4_A 245 TASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHD 324 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 8888887643 1 111 4567777778888899999999888888875543 457788889999999999
Q ss_pred hHHHHHHHHHh
Q 040319 661 NSELVREDMRE 671 (812)
Q Consensus 661 ~a~~~~~~m~~ 671 (812)
+|.+.+++..+
T Consensus 325 ~A~~~~~~al~ 335 (406)
T 3sf4_A 325 QAMHFAEKHLE 335 (406)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99888887643
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.27 E-value=4.8e-11 Score=116.23 Aligned_cols=63 Identities=16% Similarity=-0.016 Sum_probs=30.7
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhcCCCC-CCceeeeHHHHHHHHHcCChhhHHHHHHHhcc
Q 040319 368 NDCIEAALLDMLTRCGRMADAEKMFYRWPTD-RDDSIIWTSMICGYARSGKPEHAILLFHQSQS 430 (812)
Q Consensus 368 ~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 430 (812)
+...+..+...|.+.|++++|...|++.... +++...|..+...+.+.|++++|+..|++...
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 67 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVA 67 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444444555555555555555555543211 22344455555555555555555555555444
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.27 E-value=1.8e-10 Score=125.77 Aligned_cols=282 Identities=10% Similarity=-0.023 Sum_probs=184.9
Q ss_pred HHHHHHHhcCCH---HHHHHHHhcCCCCCCceeeeHHHHHHHHHcC-----ChhhHHHHHHHhcccCCCCCChhhHHHHH
Q 040319 374 ALLDMLTRCGRM---ADAEKMFYRWPTDRDDSIIWTSMICGYARSG-----KPEHAILLFHQSQSEATVVPDEIALTSVL 445 (812)
Q Consensus 374 ~Li~~y~~~g~~---~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g-----~~~~A~~~~~~m~~~~g~~p~~~t~~~ll 445 (812)
.|..+|...|+. ++|...|++.. .. +...+..+...+...+ ++++|+..|++... .|... .+..+-
T Consensus 40 ~Lg~~y~~~g~~~d~~~A~~~~~~A~-~~-~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~-~g~~~---A~~~Lg 113 (452)
T 3e4b_A 40 GLADIQVGTRDPAQIKQAEATYRAAA-DT-SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFA-NGEGN---TLIPLA 113 (452)
T ss_dssp TCC------------------------------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHH-TTCSS---CHHHHH
T ss_pred HHHHHHHccCCCCCHHHHHHHHHHHH-hC-CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHH-CCCHH---HHHHHH
Confidence 344455556666 78888887776 44 4666777766555554 66788888888776 44322 333344
Q ss_pred HHhcCccch---HHHHHHHHHHHHhCCCCchhHHHHHHHHhhhcC----CHHHHHHHHccCCCCChhHHHHHHHHHHhcC
Q 040319 446 GVCGTLGFH---EMGKQIHSYALKTGFSSDLGVANSMVSMYFKCC----NMSNAIKAFNKMPSHDIVSWNGLIAGHLLHR 518 (812)
Q Consensus 446 ~a~~~~~~~---~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g----~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g 518 (812)
..+...+.. ..+.+.+......| ++.....|..+|...+ ..+.|..++......++..+..|...|...|
T Consensus 114 ~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g 190 (452)
T 3e4b_A 114 MLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQ 190 (452)
T ss_dssp HHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTT
T ss_pred HHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 444333332 23444444444444 3556677888888887 4556666777777777779999999999999
Q ss_pred ---ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCC--CCchHHHHHHHHHHhhhhcCccCCcchHHHHHHH-H--hhc
Q 040319 519 ---QGDEALAVWSSMEKASIKPDAITFVLIISAYRYT--NLNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSV-L--GYW 590 (812)
Q Consensus 519 ---~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~--~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~-l--~~~ 590 (812)
+.++|++.|++..+.| .++...+..+...|... ..+++++|.++|+... .-++..+..|..+ | ...
T Consensus 191 ~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-----~g~~~a~~~Lg~~~~~~~~~ 264 (452)
T 3e4b_A 191 QPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-----PGYPASWVSLAQLLYDFPEL 264 (452)
T ss_dssp CHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-----GGSTHHHHHHHHHHHHSGGG
T ss_pred CcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-----CCCHHHHHHHHHHHHhCCCC
Confidence 9999999999999976 34444444555555440 0268999999999875 3457778888887 4 568
Q ss_pred CChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHccCCCCCchHHHHHhhhhh----CCCcch
Q 040319 591 GFLEEAEETINNMPFQPKVSVWRALLDSCRIRL-----NTTIGKRVAKHILAMEPQDPATYILVSNLYSS----SGRWHN 661 (812)
Q Consensus 591 g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~-----~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~----~g~~~~ 661 (812)
|++++|++.+++..-..+...+..|...|. .| |.++|...++++. |.++.++..|+.+|.. ..++++
T Consensus 265 ~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~ 340 (452)
T 3e4b_A 265 GDVEQMMKYLDNGRAADQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GREVAADYYLGQIYRRGYLGKVYPQK 340 (452)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHTTTTSSCCHHH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHCCCCCCcCHHH
Confidence 999999999998653346777777777776 66 9999999999998 8899999999999988 348999
Q ss_pred HHHHHHHHHhCCC
Q 040319 662 SELVREDMREKGF 674 (812)
Q Consensus 662 a~~~~~~m~~~g~ 674 (812)
|.+++++.-+.|.
T Consensus 341 A~~~~~~Aa~~g~ 353 (452)
T 3e4b_A 341 ALDHLLTAARNGQ 353 (452)
T ss_dssp HHHHHHHHHTTTC
T ss_pred HHHHHHHHHhhCh
Confidence 9999999877654
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.27 E-value=1.3e-11 Score=128.92 Aligned_cols=197 Identities=12% Similarity=0.016 Sum_probs=143.7
Q ss_pred hhHHHHHHHHhhhcCCHHHHHHHHccCCC-----CC----hhHHHHHHHHHHhcCC--------------------hHHH
Q 040319 473 LGVANSMVSMYFKCCNMSNAIKAFNKMPS-----HD----IVSWNGLIAGHLLHRQ--------------------GDEA 523 (812)
Q Consensus 473 ~~~~~~Li~~y~k~g~~~~A~~~f~~~~~-----~~----~~~~~~li~~~~~~g~--------------------~~~A 523 (812)
..++..+...|...|++++|...|++..+ ++ ..+|..+...|...|+ +++|
T Consensus 83 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A 162 (338)
T 3ro2_A 83 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAA 162 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHH
Confidence 44566677778888888888877766543 22 3367777888888888 8888
Q ss_pred HHHHHHHHHC----CCCCCH-HHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCC----cchHHHHHHHHhhcCChH
Q 040319 524 LAVWSSMEKA----SIKPDA-ITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPT----SEHYASLVSVLGYWGFLE 594 (812)
Q Consensus 524 ~~l~~~m~~~----g~~pd~-~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~y~~li~~l~~~g~~~ 594 (812)
++.+++.... +..|.. .++..+...+.. .|++++|.++++...+...-.++ ...+..+..++.+.|+++
T Consensus 163 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 240 (338)
T 3ro2_A 163 VDLYEENLSLVTALGDRAAQGRAFGNLGNTHYL--LGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFE 240 (338)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH--HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH--hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHH
Confidence 8888776542 112222 355666667777 88999999988877652211122 337888889999999999
Q ss_pred HHHHHHHhCC-C---CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCC------CchHHHHHhhhhhCCCcc
Q 040319 595 EAEETINNMP-F---QPK----VSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQD------PATYILVSNLYSSSGRWH 660 (812)
Q Consensus 595 ~A~~~~~~m~-~---~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~y~~~g~~~ 660 (812)
+|.+.+++.. . .++ ..++..+...+...|+.+.|...+++++++.|.. ...+..++.+|.+.|+++
T Consensus 241 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 320 (338)
T 3ro2_A 241 TASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHD 320 (338)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChH
Confidence 9999888753 1 112 5577778888999999999999999998876543 347889999999999999
Q ss_pred hHHHHHHHHHh
Q 040319 661 NSELVREDMRE 671 (812)
Q Consensus 661 ~a~~~~~~m~~ 671 (812)
+|.+.+++..+
T Consensus 321 ~A~~~~~~a~~ 331 (338)
T 3ro2_A 321 QAMHFAEKHLE 331 (338)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998765
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.25 E-value=7.9e-10 Score=111.98 Aligned_cols=225 Identities=9% Similarity=-0.065 Sum_probs=137.4
Q ss_pred eeeeHHHHHHHHHcCChhhHHHHHHHhcccCCCCCChhhHHHHHHHhcCccchHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 040319 402 SIIWTSMICGYARSGKPEHAILLFHQSQSEATVVPDEIALTSVLGVCGTLGFHEMGKQIHSYALKTGFSSDLGVANSMVS 481 (812)
Q Consensus 402 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~ 481 (812)
..++..+...|...|++++|++.|++..+ . .+...+..|..
T Consensus 6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~-~--------------------------------------~~~~a~~~lg~ 46 (273)
T 1ouv_A 6 PKELVGLGAKSYKEKDFTQAKKYFEKACD-L--------------------------------------KENSGCFNLGV 46 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-T--------------------------------------TCHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHH-C--------------------------------------CCHHHHHHHHH
Confidence 44555566666666666666666666554 1 12233344444
Q ss_pred Hhhh----cCCHHHHHHHHccCCC-CChhHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcC-
Q 040319 482 MYFK----CCNMSNAIKAFNKMPS-HDIVSWNGLIAGHLL----HRQGDEALAVWSSMEKASIKPDAITFVLIISAYRY- 551 (812)
Q Consensus 482 ~y~k----~g~~~~A~~~f~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~- 551 (812)
+|.. .|++++|...|++..+ .+..+|..+...|.. .+++++|++.|++..+.+ +...+..+...+..
T Consensus 47 ~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~ 123 (273)
T 1ouv_A 47 LYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDG 123 (273)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHC
T ss_pred HHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcC
Confidence 5555 5555555555554432 345555556666666 666666666666666643 33333333333321
Q ss_pred -CCCchHHHHHHHHHHhhhhcCccCCcchHHHHHHHHhh----cCChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----c
Q 040319 552 -TNLNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGY----WGFLEEAEETINNMPFQPKVSVWRALLDSCRI----R 622 (812)
Q Consensus 552 -~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~----~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~----~ 622 (812)
...|++++|.++|+...+ .+ +...+..+..+|.+ .+++++|++.+++..-..+...+..+...+.. .
T Consensus 124 ~~~~~~~~~A~~~~~~a~~-~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~ 199 (273)
T 1ouv_A 124 KVVTRDFKKAVEYFTKACD-LN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGAT 199 (273)
T ss_dssp SSSCCCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSC
T ss_pred CCcccCHHHHHHHHHHHHh-cC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCC
Confidence 004566666666666654 11 34555666666666 67777777777664422345666677777777 7
Q ss_pred CCHHHHHHHHHHHHccCCCCCchHHHHHhhhhh----CCCcchHHHHHHHHHhCCC
Q 040319 623 LNTTIGKRVAKHILAMEPQDPATYILVSNLYSS----SGRWHNSELVREDMREKGF 674 (812)
Q Consensus 623 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~----~g~~~~a~~~~~~m~~~g~ 674 (812)
++.++|...++++++.+| +..+..|+.+|.. .|++++|.+.+++..+.|.
T Consensus 200 ~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 200 KNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp CCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred ccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCC
Confidence 888888888888888766 6678888888888 8888888888888766543
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.23 E-value=6.2e-11 Score=112.08 Aligned_cols=165 Identities=11% Similarity=0.079 Sum_probs=141.7
Q ss_pred chhHHHHHHHHhhhcCCHHHHHHHHccCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHH
Q 040319 472 DLGVANSMVSMYFKCCNMSNAIKAFNKMPS---HDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDA-ITFVLIIS 547 (812)
Q Consensus 472 ~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~ 547 (812)
+..+|..|...|.+.|++++|...|++..+ .++.+|..+...|...|++++|+..+++... ..|+. ..+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVV--LDTTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCchhHHHHHHHHH
Confidence 567888999999999999999999998764 5678899999999999999999999999988 56665 44555555
Q ss_pred HhcCCCCchHHHHHHHHHHhhhhcCccCC-cchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCC
Q 040319 548 AYRYTNLNLVDSCRKLFLSMKTIYNIEPT-SEHYASLVSVLGYWGFLEEAEETINNMP-FQP-KVSVWRALLDSCRIRLN 624 (812)
Q Consensus 548 a~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~ 624 (812)
.+.. .++++++.+.+....+ +.|+ ...+..+..+|.+.|++++|++.+++.. ..| +..+|..+..++...|+
T Consensus 82 ~~~~--~~~~~~a~~~~~~a~~---~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~ 156 (184)
T 3vtx_A 82 ANFM--IDEKQAAIDALQRAIA---LNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGL 156 (184)
T ss_dssp HHHH--TTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHH--cCCHHHHHHHHHHHHH---hCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCC
Confidence 6667 8999999999998876 3444 7788999999999999999999999865 555 67899999999999999
Q ss_pred HHHHHHHHHHHHccCCCCC
Q 040319 625 TTIGKRVAKHILAMEPQDP 643 (812)
Q Consensus 625 ~~~a~~~~~~~~~~~p~~~ 643 (812)
.++|...++++++++|+++
T Consensus 157 ~~~A~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 157 RDEAVKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHHhCCccCH
Confidence 9999999999999999754
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.21 E-value=2.3e-11 Score=131.11 Aligned_cols=186 Identities=12% Similarity=0.028 Sum_probs=133.0
Q ss_pred hHHHHHHHHhhhcCC--------------------HHHHHHHHccCCC-----C----ChhHHHHHHHHHHhcCChHHHH
Q 040319 474 GVANSMVSMYFKCCN--------------------MSNAIKAFNKMPS-----H----DIVSWNGLIAGHLLHRQGDEAL 524 (812)
Q Consensus 474 ~~~~~Li~~y~k~g~--------------------~~~A~~~f~~~~~-----~----~~~~~~~li~~~~~~g~~~~A~ 524 (812)
.++..+...|...|+ +++|...|++... + ...+|..+...|...|++++|+
T Consensus 128 ~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 207 (406)
T 3sf4_A 128 RALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAV 207 (406)
T ss_dssp HHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHH
T ss_pred HHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHH
Confidence 355666667777777 6776666654322 1 1346778888888899999999
Q ss_pred HHHHHHHHCC-CCCC----HHHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCC----cchHHHHHHHHhhcCChHH
Q 040319 525 AVWSSMEKAS-IKPD----AITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPT----SEHYASLVSVLGYWGFLEE 595 (812)
Q Consensus 525 ~l~~~m~~~g-~~pd----~~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~y~~li~~l~~~g~~~~ 595 (812)
+.|++..+.. -.++ ..++..+...+.. .|++++|..+++...+...-.++ ...+..+..+|.+.|++++
T Consensus 208 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 285 (406)
T 3sf4_A 208 IAHEQRLLIAKEFGDKAAERRAYSNLGNAYIF--LGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEK 285 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH--cCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHH
Confidence 9888887521 0122 1356667777777 89999999998877642111111 5678888999999999999
Q ss_pred HHHHHHhCC----CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCC------CCchHHHHHhhhhhCCCcch
Q 040319 596 AEETINNMP----FQPK----VSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQ------DPATYILVSNLYSSSGRWHN 661 (812)
Q Consensus 596 A~~~~~~m~----~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~------~~~~~~~l~~~y~~~g~~~~ 661 (812)
|.+.+++.. ..++ ..++..+...+...|+.+.|...+++++++.+. ...++..++.+|...|+...
T Consensus 286 A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 365 (406)
T 3sf4_A 286 AIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYS 365 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHH
Confidence 999988753 1122 557778888899999999999999999987433 35578889999998887654
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.17 E-value=1.3e-09 Score=112.60 Aligned_cols=216 Identities=8% Similarity=-0.012 Sum_probs=152.2
Q ss_pred hhHHHHHHHhcccCCCCCChh-hHHHHHHHhc-------Cccch-------HHHHHHHHHHHHhCCCCchhHHHHHHHHh
Q 040319 419 EHAILLFHQSQSEATVVPDEI-ALTSVLGVCG-------TLGFH-------EMGKQIHSYALKTGFSSDLGVANSMVSMY 483 (812)
Q Consensus 419 ~~A~~~~~~m~~~~g~~p~~~-t~~~ll~a~~-------~~~~~-------~~a~~~~~~~~~~g~~~~~~~~~~Li~~y 483 (812)
++|+..|++... ..|+.. .|..+...+. ..|+. ++|..+++.+++.-.+.+...|..++..+
T Consensus 33 ~~a~~~~~~al~---~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~ 109 (308)
T 2ond_A 33 KRVMFAYEQCLL---VLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYE 109 (308)
T ss_dssp HHHHHHHHHHHH---HHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH---HcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 456666666655 334332 3333333332 23554 67777777777632233566788888888
Q ss_pred hhcCCHHHHHHHHccCCC--CC-hh-HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHH-hcCCCCchH
Q 040319 484 FKCCNMSNAIKAFNKMPS--HD-IV-SWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDA-ITFVLIISA-YRYTNLNLV 557 (812)
Q Consensus 484 ~k~g~~~~A~~~f~~~~~--~~-~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a-~~~~~~g~~ 557 (812)
.+.|++++|..+|++..+ |+ .. .|..++..+.+.|++++|..+|++.++ ..|+. ..|...... +.. .|++
T Consensus 110 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~--~~p~~~~~~~~~a~~~~~~--~~~~ 185 (308)
T 2ond_A 110 ESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE--DARTRHHVYVTAALMEYYC--SKDK 185 (308)
T ss_dssp HHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHT--STTCCTHHHHHHHHHHHHT--SCCH
T ss_pred HhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHH--cCCH
Confidence 888899999888887665 33 33 788888888889999999999999888 44443 333333222 223 5889
Q ss_pred HHHHHHHHHhhhhcCccC-CcchHHHHHHHHhhcCChHHHHHHHHhCC----CCC--CHHHHHHHHHHHHhcCCHHHHHH
Q 040319 558 DSCRKLFLSMKTIYNIEP-TSEHYASLVSVLGYWGFLEEAEETINNMP----FQP--KVSVWRALLDSCRIRLNTTIGKR 630 (812)
Q Consensus 558 ~~a~~~~~~m~~~~~~~p-~~~~y~~li~~l~~~g~~~~A~~~~~~m~----~~p--~~~~~~~ll~~~~~~~~~~~a~~ 630 (812)
++|.++|+...+. .| +...|..+++.+.+.|++++|..+|++.. ++| ...+|..++.....+|+.+.|..
T Consensus 186 ~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~ 262 (308)
T 2ond_A 186 SVAFKIFELGLKK---YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILK 262 (308)
T ss_dssp HHHHHHHHHHHHH---HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHH
T ss_pred HHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999888763 34 46788888888999999999999988853 254 36688888888888999999999
Q ss_pred HHHHHHccCCCCCc
Q 040319 631 VAKHILAMEPQDPA 644 (812)
Q Consensus 631 ~~~~~~~~~p~~~~ 644 (812)
+++++++..|+++.
T Consensus 263 ~~~~a~~~~p~~~~ 276 (308)
T 2ond_A 263 VEKRRFTAFREEYE 276 (308)
T ss_dssp HHHHHHHHTTTTTS
T ss_pred HHHHHHHHcccccc
Confidence 99999999887654
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.17 E-value=4.7e-08 Score=110.35 Aligned_cols=226 Identities=8% Similarity=0.026 Sum_probs=128.8
Q ss_pred HHHHHHHHHHcCCCCCHhHHHHHHHHhccchhhhhHH-HHHhhHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC
Q 040319 318 ALGLFVKLLEEGLVLTEFTLTSVVNACGLIMEAKLSE-QIHGFVMKFGLGSNDCIEAALLDMLTRCGRMADAEKMFYRWP 396 (812)
Q Consensus 318 A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~-~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~ 396 (812)
+..+|++.+..- .-+...+.....-+...++.+.+. .+++..+.. .+.+..++-..+..+-+.|+++.|.++|+++.
T Consensus 328 v~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l 405 (679)
T 4e6h_A 328 MTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCI 405 (679)
T ss_dssp HHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 345566665542 223333444444444556666664 777777653 23455556666777777777777777776654
Q ss_pred CC-----------CC------------ceeeeHHHHHHHHHcCChhhHHHHHHHhcccC-C-CCCChhhHHHHHHHhcCc
Q 040319 397 TD-----------RD------------DSIIWTSMICGYARSGKPEHAILLFHQSQSEA-T-VVPDEIALTSVLGVCGTL 451 (812)
Q Consensus 397 ~~-----------~~------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-g-~~p~~~t~~~ll~a~~~~ 451 (812)
.. .| ....|...+....+.|..+.|..+|.+..+ . + ..+......+.+.-. ..
T Consensus 406 ~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~-~~~~~~~~lyi~~A~lE~~-~~ 483 (679)
T 4e6h_A 406 DRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRR-LKKLVTPDIYLENAYIEYH-IS 483 (679)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH-TGGGSCTHHHHHHHHHHHT-TT
T ss_pred HHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hcCCCChHHHHHHHHHHHH-hC
Confidence 11 01 122466666666666777777777777765 2 1 111112222222211 12
Q ss_pred cchHHHHHHHHHHHHhCCCCchhHHHHHHHHhhhcCCHHHHHHHHccCCC--C----ChhHHHHHHHHHHhcCChHHHHH
Q 040319 452 GFHEMGKQIHSYALKTGFSSDLGVANSMVSMYFKCCNMSNAIKAFNKMPS--H----DIVSWNGLIAGHLLHRQGDEALA 525 (812)
Q Consensus 452 ~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~--~----~~~~~~~li~~~~~~g~~~~A~~ 525 (812)
++.+.|+.+++..++. ++.+...+...++.....|+.+.|+.+|+.... | ....|...+.--.++|+.+.+.+
T Consensus 484 ~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~ 562 (679)
T 4e6h_A 484 KDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRT 562 (679)
T ss_dssp SCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHH
T ss_pred CCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 3467777777777665 344555666667766777777777777776554 2 22466666666677777777777
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHhc
Q 040319 526 VWSSMEKASIKPDAITFVLIISAYR 550 (812)
Q Consensus 526 l~~~m~~~g~~pd~~t~~~ll~a~~ 550 (812)
+.+++.+ ..|+......+..-|.
T Consensus 563 v~~R~~~--~~P~~~~~~~f~~ry~ 585 (679)
T 4e6h_A 563 LEKRFFE--KFPEVNKLEEFTNKYK 585 (679)
T ss_dssp HHHHHHH--HSTTCCHHHHHHHHTC
T ss_pred HHHHHHH--hCCCCcHHHHHHHHhc
Confidence 7777777 4555544444444443
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.16 E-value=1.9e-09 Score=109.09 Aligned_cols=218 Identities=13% Similarity=-0.042 Sum_probs=124.9
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHhcc----chhhhhHHHHHhhHHHhcCCCchhHHHHHHH
Q 040319 302 YNALLAGYCKNGKAMEALGLFVKLLEEGLVLTEFTLTSVVNACGL----IMEAKLSEQIHGFVMKFGLGSNDCIEAALLD 377 (812)
Q Consensus 302 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~----~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~ 377 (812)
+..+...|...|++++|+..|++..+.+ +...+..+-..+.. .++++.|...+....+.+ +...+..|..
T Consensus 9 ~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~ 82 (273)
T 1ouv_A 9 LVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLGN 82 (273)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHHH
Confidence 3344444444444444444444444411 12222223233333 444444444444444433 3444555555
Q ss_pred HHHh----cCCHHHHHHHHhcCCCCCCceeeeHHHHHHHHH----cCChhhHHHHHHHhcccCCCCCChhhHHHHHHHhc
Q 040319 378 MLTR----CGRMADAEKMFYRWPTDRDDSIIWTSMICGYAR----SGKPEHAILLFHQSQSEATVVPDEIALTSVLGVCG 449 (812)
Q Consensus 378 ~y~~----~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~a~~ 449 (812)
+|.. .+++++|.+.|++.. ..++..++..+...|.. .+++++|++.|++..+ .+ +...+..+-..+.
T Consensus 83 ~~~~g~~~~~~~~~A~~~~~~a~-~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~-~~---~~~a~~~lg~~~~ 157 (273)
T 1ouv_A 83 LYYSGQGVSQNTNKALQYYSKAC-DLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACD-LN---DGDGCTILGSLYD 157 (273)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHH
T ss_pred HHhCCCCcccCHHHHHHHHHHHH-HcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHh-cC---cHHHHHHHHHHHH
Confidence 6666 677777777776655 33335666666666666 6777777777777665 33 2333444444444
Q ss_pred C----ccchHHHHHHHHHHHHhCCCCchhHHHHHHHHhhh----cCCHHHHHHHHccCCC-CChhHHHHHHHHHHh----
Q 040319 450 T----LGFHEMGKQIHSYALKTGFSSDLGVANSMVSMYFK----CCNMSNAIKAFNKMPS-HDIVSWNGLIAGHLL---- 516 (812)
Q Consensus 450 ~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k----~g~~~~A~~~f~~~~~-~~~~~~~~li~~~~~---- 516 (812)
. .++.++|...+....+.+ +...+..+..+|.+ .+++++|...|++..+ .+...+..+...|..
T Consensus 158 ~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~g~~~ 234 (273)
T 1ouv_A 158 AGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYNGEGV 234 (273)
T ss_dssp HTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS
T ss_pred cCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCc
Confidence 4 666677777766666653 34556667777777 7777777777776543 335666777777777
Q ss_pred cCChHHHHHHHHHHHHC
Q 040319 517 HRQGDEALAVWSSMEKA 533 (812)
Q Consensus 517 ~g~~~~A~~l~~~m~~~ 533 (812)
.+++++|++.|++..+.
T Consensus 235 ~~~~~~A~~~~~~a~~~ 251 (273)
T 1ouv_A 235 TRNEKQAIENFKKGCKL 251 (273)
T ss_dssp SCCSTTHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHc
Confidence 77788888888877773
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.15 E-value=3.4e-08 Score=111.57 Aligned_cols=440 Identities=9% Similarity=0.016 Sum_probs=277.8
Q ss_pred ChhHHHHHHHHhHhcCCCCCCcchHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC---hHHHH
Q 040319 181 EYEKAFELFRDMKRDNGFTVDYFTISTLLTACTGCFVLMEGRAVHAHAIRIGLGANLSVNNALIGFYTKCGR---VKDVV 257 (812)
Q Consensus 181 ~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~---~~~A~ 257 (812)
...+.+..|+.-+... +-|..+|..++..+.+.+.++.++.+++.++.. ++.....|...+..-.+.|. .+.+.
T Consensus 47 ~~~d~i~~lE~~l~~n--p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~ 123 (679)
T 4e6h_A 47 DESDVIGKLNDMIEEQ--PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIE 123 (679)
T ss_dssp CCSCHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHH
T ss_pred CCHHHHHHHHHHHHHC--cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHH
Confidence 3445555555542442 457788999999998899999999999999986 57778889999999889888 99999
Q ss_pred HHHhcCC--C---CcchhHHHHHHHHHhhCCh--------hHHHHHhccCC------CC-CcccHHHHHHHHHh------
Q 040319 258 ALLERMP--V---MDIITLTEIIIAYMEFGYV--------DLAVEIFDKMP------EK-NSVSYNALLAGYCK------ 311 (812)
Q Consensus 258 ~l~~~~~--~---~~~~~~~~li~~~~~~g~~--------~~A~~~f~~m~------~~-d~~~~~~li~~~~~------ 311 (812)
.+|++.. . +++..|...+.-..+.++. +...++|+... ++ +...|...+.-...
T Consensus 124 ~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~ 203 (679)
T 4e6h_A 124 PVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNK 203 (679)
T ss_dssp HHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSH
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCc
Confidence 9999864 2 6777787777766555543 22335665421 22 23467776654332
Q ss_pred ---CCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHhccchhhhhHHHHHhhHHHhcCCCchhHHHHHHHHHHhcCCHHHH
Q 040319 312 ---NGKAMEALGLFVKLLEEGLVLTEFTLTSVVNACGLIMEAKLSEQIHGFVMKFGLGSNDCIEAALLDMLTRCGRMADA 388 (812)
Q Consensus 312 ---~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A 388 (812)
.++.+.+..+|++.+......-..+|..... +.+.-+...+..++... ...++.|
T Consensus 204 ~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~-fe~~~~~~~a~~~~~e~---------------------~~~y~~A 261 (679)
T 4e6h_A 204 FEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQ-WEQDVNQLTARRHIGEL---------------------SAQYMNA 261 (679)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHH-HHHHHCTTTHHHHHHHH---------------------HHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHH-HHHhcCcchHHHHHHHh---------------------hHHHHHH
Confidence 2345667777777764221111222221111 11100111111111110 0112222
Q ss_pred HHHHhc-------CCC---CC---------C--c------eeeeHHHHHHHHHcC-------ChhhHHHHHHHhcccCCC
Q 040319 389 EKMFYR-------WPT---DR---------D--D------SIIWTSMICGYARSG-------KPEHAILLFHQSQSEATV 434 (812)
Q Consensus 389 ~~~f~~-------~~~---~~---------~--~------~~~~~~li~~~~~~g-------~~~~A~~~~~~m~~~~g~ 434 (812)
...+.+ +.. .. | + ...|...+.---..+ ....+..+|++.... .
T Consensus 262 r~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~--~ 339 (679)
T 4e6h_A 262 RSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH--V 339 (679)
T ss_dssp HHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH--T
T ss_pred HHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH--c
Confidence 222221 110 00 0 0 123444443322222 123345667777651 2
Q ss_pred CCChhhHHHHHHHhcCccchHHHH-HHHHHHHHhCCCCchhHHHHHHHHhhhcCCHHHHHHHHccCCC------------
Q 040319 435 VPDEIALTSVLGVCGTLGFHEMGK-QIHSYALKTGFSSDLGVANSMVSMYFKCCNMSNAIKAFNKMPS------------ 501 (812)
Q Consensus 435 ~p~~~t~~~ll~a~~~~~~~~~a~-~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~------------ 501 (812)
.-+...|.....-+...|+.+.|. .+++..+.. .+.+...+-.++..+-+.|+++.|..+|+.+..
T Consensus 340 p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~ 418 (679)
T 4e6h_A 340 CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMED 418 (679)
T ss_dssp TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhc
Confidence 223445555556666678888886 999999874 345677788889999999999999999987753
Q ss_pred -CC------------hhHHHHHHHHHHhcCChHHHHHHHHHHHHC-C-CCCCHHHHHHHHHHhcCCCCchHHHHHHHHHH
Q 040319 502 -HD------------IVSWNGLIAGHLLHRQGDEALAVWSSMEKA-S-IKPDAITFVLIISAYRYTNLNLVDSCRKLFLS 566 (812)
Q Consensus 502 -~~------------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g-~~pd~~t~~~ll~a~~~~~~g~~~~a~~~~~~ 566 (812)
|+ ...|-..+....+.|..+.|.++|.+.++. + ..+......+.+.- .. .++.+.|.++|+.
T Consensus 419 ~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~-~~--~~d~e~Ar~ife~ 495 (679)
T 4e6h_A 419 DPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEY-HI--SKDTKTACKVLEL 495 (679)
T ss_dssp STTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHH-TT--TSCCHHHHHHHHH
T ss_pred cCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH-Hh--CCCHHHHHHHHHH
Confidence 31 236888888888899999999999999985 2 12222333333332 22 3568999999999
Q ss_pred hhhhcCccCCcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCC
Q 040319 567 MKTIYNIEPTSEHYASLVSVLGYWGFLEEAEETINNMP-FQP----KVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQ 641 (812)
Q Consensus 567 m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~ 641 (812)
..+.+ .-+...|...++.+...|+.+.|..+|++.. ..| ...+|..++.--..+|+.+.+..+.+++.+..|+
T Consensus 496 ~Lk~~--p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~ 573 (679)
T 4e6h_A 496 GLKYF--ATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPE 573 (679)
T ss_dssp HHHHH--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTT
T ss_pred HHHHC--CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 88743 3346677899999999999999999999855 233 3568999999999999999999999999999998
Q ss_pred CCchHHHHHhhhh
Q 040319 642 DPATYILVSNLYS 654 (812)
Q Consensus 642 ~~~~~~~l~~~y~ 654 (812)
++ ....+++=|.
T Consensus 574 ~~-~~~~f~~ry~ 585 (679)
T 4e6h_A 574 VN-KLEEFTNKYK 585 (679)
T ss_dssp CC-HHHHHHHHTC
T ss_pred Cc-HHHHHHHHhc
Confidence 65 3444444443
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.15 E-value=1.4e-10 Score=125.45 Aligned_cols=262 Identities=11% Similarity=0.017 Sum_probs=163.6
Q ss_pred HHHHHhcCCHHHHHHHHhcCCCCCC-ce----eeeHHHHHHHHHcCChhhHHHHHHHhccc---CCCCC-ChhhHHHHHH
Q 040319 376 LDMLTRCGRMADAEKMFYRWPTDRD-DS----IIWTSMICGYARSGKPEHAILLFHQSQSE---ATVVP-DEIALTSVLG 446 (812)
Q Consensus 376 i~~y~~~g~~~~A~~~f~~~~~~~~-~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~g~~p-~~~t~~~ll~ 446 (812)
...|...|++++|...|++.....+ +. ..|..+...|...|++++|+..|++.... .+-.| ....+..+..
T Consensus 55 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~ 134 (411)
T 4a1s_A 55 GERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGN 134 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHH
Confidence 3344455555555555544321111 11 23444555555555555555555544330 00011 1123344444
Q ss_pred HhcCccchHHHHHHHHHHHHh----C-CCCchhHHHHHHHHhhhcCC-----------------HHHHHHHHccCCC---
Q 040319 447 VCGTLGFHEMGKQIHSYALKT----G-FSSDLGVANSMVSMYFKCCN-----------------MSNAIKAFNKMPS--- 501 (812)
Q Consensus 447 a~~~~~~~~~a~~~~~~~~~~----g-~~~~~~~~~~Li~~y~k~g~-----------------~~~A~~~f~~~~~--- 501 (812)
.+...|+++.|...+..+.+. + ......++..+...|...|+ +++|...|++..+
T Consensus 135 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~ 214 (411)
T 4a1s_A 135 TLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMR 214 (411)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 555555555555555554432 1 11234466667777777787 7777777765432
Q ss_pred --C----ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC---C----HHHHHHHHHHhcCCCCchHHHHHHHHHHhh
Q 040319 502 --H----DIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKP---D----AITFVLIISAYRYTNLNLVDSCRKLFLSMK 568 (812)
Q Consensus 502 --~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p---d----~~t~~~ll~a~~~~~~g~~~~a~~~~~~m~ 568 (812)
. ....|..+...|...|++++|++.|++..+ +.| + ..++..+...+.. .|++++|..+|+...
T Consensus 215 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~~~~~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~al 290 (411)
T 4a1s_A 215 DLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLR--IAREFGDRAAERRANSNLGNSHIF--LGQFEDAAEHYKRTL 290 (411)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHHHHTCHHHHHHHHHHHHHHHHT--TTCHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH--HHHhcCCcHHHHHHHHHHHHHHHH--CcCHHHHHHHHHHHH
Confidence 1 234777888889999999999999998876 222 2 1266677777888 899999999998776
Q ss_pred hhcCccC----CcchHHHHHHHHhhcCChHHHHHHHHhCC-C------CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 040319 569 TIYNIEP----TSEHYASLVSVLGYWGFLEEAEETINNMP-F------QP-KVSVWRALLDSCRIRLNTTIGKRVAKHIL 636 (812)
Q Consensus 569 ~~~~~~p----~~~~y~~li~~l~~~g~~~~A~~~~~~m~-~------~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 636 (812)
+...-.. ....+..+..++.+.|++++|.+.+++.. . .+ ...++..+...+...|+.+.|...+++++
T Consensus 291 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 370 (411)
T 4a1s_A 291 ALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHL 370 (411)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 5221111 15678889999999999999999988754 1 11 14477778888999999999999999999
Q ss_pred ccCCC
Q 040319 637 AMEPQ 641 (812)
Q Consensus 637 ~~~p~ 641 (812)
++.+.
T Consensus 371 ~~~~~ 375 (411)
T 4a1s_A 371 QLAXX 375 (411)
T ss_dssp HHCCH
T ss_pred HHHhh
Confidence 88764
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.12 E-value=9.4e-10 Score=107.98 Aligned_cols=203 Identities=9% Similarity=-0.027 Sum_probs=110.0
Q ss_pred hhHHHHHHHhcCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHhhhcCCHHHHHHHHccCCC---CChhHHHHHHHHHH
Q 040319 439 IALTSVLGVCGTLGFHEMGKQIHSYALKTGFSSDLGVANSMVSMYFKCCNMSNAIKAFNKMPS---HDIVSWNGLIAGHL 515 (812)
Q Consensus 439 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~ 515 (812)
..+...-..+...|+++.|...+..+++...+++...+..+...|.+.|++++|...|++..+ .+...|..+...|.
T Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 87 (228)
T 4i17_A 8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYR 87 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHH
Confidence 344444455555666666666666666554324444444456666666666666666655432 23345555666666
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHH--------HHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCC---cchHHHHH
Q 040319 516 LHRQGDEALAVWSSMEKASIKPDAI--------TFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPT---SEHYASLV 584 (812)
Q Consensus 516 ~~g~~~~A~~l~~~m~~~g~~pd~~--------t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~---~~~y~~li 584 (812)
..|++++|++.|++.++ ..|+.. .+..+...+.. .|++++|.+.|+...+ +.|+ ...|..+.
T Consensus 88 ~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~g~~~~~--~~~~~~A~~~~~~al~---~~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 88 DMKNNQEYIATLTEGIK--AVPGNATIEKLYAIYYLKEGQKFQQ--AGNIEKAEENYKHATD---VTSKKWKTDALYSLG 160 (228)
T ss_dssp HTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHTT---SSCHHHHHHHHHHHH
T ss_pred HcccHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHHHhHHHHH--hccHHHHHHHHHHHHh---cCCCcccHHHHHHHH
Confidence 66666666666666665 444432 23333344444 5566666666655544 2333 34455555
Q ss_pred HHHhhcCCh--HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhh
Q 040319 585 SVLGYWGFL--EEAEETINNMPFQPKVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSS 655 (812)
Q Consensus 585 ~~l~~~g~~--~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~ 655 (812)
.+|...|+. ++|..+. ..+...+..+. ....+++++|...++++++++|+++.+...+..+...
T Consensus 161 ~~~~~~~~~~~~~a~~~~-----~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~~~ 226 (228)
T 4i17_A 161 VLFYNNGADVLRKATPLA-----SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVKAM 226 (228)
T ss_dssp HHHHHHHHHHHHHHGGGT-----TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhcc-----cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHh
Confidence 555444332 2211111 11222222221 2233455899999999999999998888888776543
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.12 E-value=6.5e-10 Score=104.67 Aligned_cols=159 Identities=12% Similarity=-0.065 Sum_probs=99.0
Q ss_pred hHHHHHHHHhhhcCCHHHHHHHHccCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhc
Q 040319 474 GVANSMVSMYFKCCNMSNAIKAFNKMPS---HDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDAITFVLIISAYR 550 (812)
Q Consensus 474 ~~~~~Li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~ 550 (812)
..+..+...|...|++++|...|+++.+ .+...|..+...|...|++++|+..++++.+ ..|+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~----------- 75 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLA--DAPDN----------- 75 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTC-----------
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCC-----------
Confidence 4455566666666777777777666654 3445566666666666666666666666655 23322
Q ss_pred CCCCchHHHHHHHHHHhhhhcCccCCcchHHHHHHHHhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHH
Q 040319 551 YTNLNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLEEAEETINNMP--FQPKVSVWRALLDSCRIRLNTTIG 628 (812)
Q Consensus 551 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~--~~p~~~~~~~ll~~~~~~~~~~~a 628 (812)
...+..++..+...|++++|.+.++++. .+.+..+|..+...+...|+.+.|
T Consensus 76 --------------------------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A 129 (186)
T 3as5_A 76 --------------------------VKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEA 129 (186)
T ss_dssp --------------------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred --------------------------HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHH
Confidence 2333444444444455555554444432 223455666666777777777777
Q ss_pred HHHHHHHHccCCCCCchHHHHHhhhhhCCCcchHHHHHHHHHh
Q 040319 629 KRVAKHILAMEPQDPATYILVSNLYSSSGRWHNSELVREDMRE 671 (812)
Q Consensus 629 ~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 671 (812)
...++++++..|+++..+..++.+|...|++++|.+.+++..+
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 172 (186)
T 3as5_A 130 IDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANE 172 (186)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 7777777777777777777777777777777777777776644
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.11 E-value=1.8e-09 Score=111.43 Aligned_cols=212 Identities=8% Similarity=-0.044 Sum_probs=170.4
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHhh-------hcCCH-------HHHHHHHccCCC---C-ChhHHHHHHHHHHh
Q 040319 455 EMGKQIHSYALKTGFSSDLGVANSMVSMYF-------KCCNM-------SNAIKAFNKMPS---H-DIVSWNGLIAGHLL 516 (812)
Q Consensus 455 ~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~-------k~g~~-------~~A~~~f~~~~~---~-~~~~~~~li~~~~~ 516 (812)
+.|..+++.+++.. +.++.+|..++..+. +.|++ ++|..+|++... | +...|..++..+..
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 56777888887753 456778888777775 35886 899999987543 3 45689999999999
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccC-CcchHHHHHHHHh-hcCC
Q 040319 517 HRQGDEALAVWSSMEKASIKPDAI--TFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEP-TSEHYASLVSVLG-YWGF 592 (812)
Q Consensus 517 ~g~~~~A~~l~~~m~~~g~~pd~~--t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~li~~l~-~~g~ 592 (812)
.|++++|.++|++.++ +.|+.. .|..+...+.. .|++++|..+|++..+ ..| +...|...+.... ..|+
T Consensus 112 ~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~--~~~~~~A~~~~~~a~~---~~p~~~~~~~~~a~~~~~~~~~ 184 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARR--AEGIKSGRMIFKKARE---DARTRHHVYVTAALMEYYCSKD 184 (308)
T ss_dssp TTCHHHHHHHHHHHHT--SSSSCTHHHHHHHHHHHHH--HHCHHHHHHHHHHHHT---STTCCTHHHHHHHHHHHHTSCC
T ss_pred cCCHHHHHHHHHHHHh--ccccCccHHHHHHHHHHHH--hcCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHHHHcCC
Confidence 9999999999999999 778653 68888888888 8999999999999986 233 3445554444432 3699
Q ss_pred hHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcc---CCC-CCchHHHHHhhhhhCCCcchHHHHH
Q 040319 593 LEEAEETINNMP-FQP-KVSVWRALLDSCRIRLNTTIGKRVAKHILAM---EPQ-DPATYILVSNLYSSSGRWHNSELVR 666 (812)
Q Consensus 593 ~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~p~-~~~~~~~l~~~y~~~g~~~~a~~~~ 666 (812)
.++|.++|++.. ..| +...|..++..+...|+.+.|+.+++++++. .|+ ....+..+++.+.+.|++++|..+.
T Consensus 185 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~ 264 (308)
T 2ond_A 185 KSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVE 264 (308)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999864 334 6889999999999999999999999999995 553 5678889999999999999999999
Q ss_pred HHHHhCCC
Q 040319 667 EDMREKGF 674 (812)
Q Consensus 667 ~~m~~~g~ 674 (812)
+++.+...
T Consensus 265 ~~a~~~~p 272 (308)
T 2ond_A 265 KRRFTAFR 272 (308)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHcc
Confidence 99876543
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.09 E-value=5.3e-11 Score=122.99 Aligned_cols=238 Identities=14% Similarity=0.097 Sum_probs=116.5
Q ss_pred eeeeHHHHHHHHHcCChhhHHHHHHHhcccCCCCCChhhHHHHHHHhcCccchHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 040319 402 SIIWTSMICGYARSGKPEHAILLFHQSQSEATVVPDEIALTSVLGVCGTLGFHEMGKQIHSYALKTGFSSDLGVANSMVS 481 (812)
Q Consensus 402 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~ 481 (812)
..+|..+...|...|++++|+..|+++.. ... .......+....++..+..
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~-~~~----------------------------~~~~~~~~~~~~~~~~la~ 77 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALE-DLE----------------------------KTSGHDHPDVATMLNILAL 77 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HHH----------------------------HHHCSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HHH----------------------------HHcCCCCHHHHHHHHHHHH
Confidence 45677778888888888888888887765 100 0000001112233444444
Q ss_pred HhhhcCCHHHHHHHHccCCC-----------CChhHHHHHHHHHHhcCChHHHHHHHHHHHHC------CCCCCH-HHHH
Q 040319 482 MYFKCCNMSNAIKAFNKMPS-----------HDIVSWNGLIAGHLLHRQGDEALAVWSSMEKA------SIKPDA-ITFV 543 (812)
Q Consensus 482 ~y~k~g~~~~A~~~f~~~~~-----------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------g~~pd~-~t~~ 543 (812)
.|...|++++|...|++... ....+|..+...|...|++++|+..|+++.+. +-.|+. ..+.
T Consensus 78 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 157 (311)
T 3nf1_A 78 VYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLN 157 (311)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHH
Confidence 45555555555544443321 11234555555566666666666666655542 112222 3344
Q ss_pred HHHHHhcCCCCchHHHHHHHHHHhhhhc-----CccC-CcchHHHHHHHHhhcCChHHHHHHHHhCC----------CCC
Q 040319 544 LIISAYRYTNLNLVDSCRKLFLSMKTIY-----NIEP-TSEHYASLVSVLGYWGFLEEAEETINNMP----------FQP 607 (812)
Q Consensus 544 ~ll~a~~~~~~g~~~~a~~~~~~m~~~~-----~~~p-~~~~y~~li~~l~~~g~~~~A~~~~~~m~----------~~p 607 (812)
.+...+.. .|++++|.++|+.+.+.. +-.| ....+..+..+|.+.|++++|.+.++++. ..|
T Consensus 158 ~la~~~~~--~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 235 (311)
T 3nf1_A 158 NLALLCQN--QGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDD 235 (311)
T ss_dssp HHHHHHHT--TTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHH--cCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCc
Confidence 44445555 666666666666554421 0012 13455666666666666666666665532 111
Q ss_pred C-HHHHHH------HHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCCcchHHHHHHHHH
Q 040319 608 K-VSVWRA------LLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWHNSELVREDMR 670 (812)
Q Consensus 608 ~-~~~~~~------ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 670 (812)
. ...|.. +...+...+....+...++++....|.++..+..++.+|.+.|++++|.+.+++..
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 305 (311)
T 3nf1_A 236 ENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAM 305 (311)
T ss_dssp --CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 1 111111 11222233344444555666666667667777777777777777777777776654
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.09 E-value=2.9e-10 Score=118.60 Aligned_cols=197 Identities=11% Similarity=0.033 Sum_probs=125.8
Q ss_pred HHHHHhcCccchHHHHHHHHHHHHhCC--C---CchhHHHHHHHHhhhcCC--------------------HHHHHHHHc
Q 040319 443 SVLGVCGTLGFHEMGKQIHSYALKTGF--S---SDLGVANSMVSMYFKCCN--------------------MSNAIKAFN 497 (812)
Q Consensus 443 ~ll~a~~~~~~~~~a~~~~~~~~~~g~--~---~~~~~~~~Li~~y~k~g~--------------------~~~A~~~f~ 497 (812)
.+...+...|+++.|...+..+.+... . ....++..+...|...|+ +++|...++
T Consensus 88 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~ 167 (338)
T 3ro2_A 88 NLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYE 167 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHH
Confidence 333444444555555544444432110 0 012355566666677777 677766665
Q ss_pred cCCC-----C----ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHhcCCCCchHHHHHHH
Q 040319 498 KMPS-----H----DIVSWNGLIAGHLLHRQGDEALAVWSSMEKASI-KPD----AITFVLIISAYRYTNLNLVDSCRKL 563 (812)
Q Consensus 498 ~~~~-----~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~pd----~~t~~~ll~a~~~~~~g~~~~a~~~ 563 (812)
+... + ....|..+...|...|++++|++.+++..+... .++ ..++..+...+.. .|++++|.++
T Consensus 168 ~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~A~~~ 245 (338)
T 3ro2_A 168 ENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIF--LGEFETASEY 245 (338)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH--HTCHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH--cCCHHHHHHH
Confidence 5432 1 134677778888888888888888888765210 111 1356666667777 8889999888
Q ss_pred HHHhhhhcCccCC----cchHHHHHHHHhhcCChHHHHHHHHhCC-C---CCC----HHHHHHHHHHHHhcCCHHHHHHH
Q 040319 564 FLSMKTIYNIEPT----SEHYASLVSVLGYWGFLEEAEETINNMP-F---QPK----VSVWRALLDSCRIRLNTTIGKRV 631 (812)
Q Consensus 564 ~~~m~~~~~~~p~----~~~y~~li~~l~~~g~~~~A~~~~~~m~-~---~p~----~~~~~~ll~~~~~~~~~~~a~~~ 631 (812)
++...+...-.++ ...+..+..++...|++++|.+.+++.. . .++ ..++..+...+...|+.+.|...
T Consensus 246 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 325 (338)
T 3ro2_A 246 YKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHF 325 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 8877642111111 5577888899999999999999888753 1 111 44777888889999999999999
Q ss_pred HHHHHccCCC
Q 040319 632 AKHILAMEPQ 641 (812)
Q Consensus 632 ~~~~~~~~p~ 641 (812)
+++++++.++
T Consensus 326 ~~~a~~~~~~ 335 (338)
T 3ro2_A 326 AEKHLEISRE 335 (338)
T ss_dssp HHHHHHC---
T ss_pred HHHHHHHHHh
Confidence 9999998765
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.08 E-value=7.3e-10 Score=121.74 Aligned_cols=177 Identities=10% Similarity=0.005 Sum_probs=155.3
Q ss_pred HHHHHHHHccCCC---CChhHHHHHHHHHHhcCCh-HHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcCCCCchHHHHHHH
Q 040319 489 MSNAIKAFNKMPS---HDIVSWNGLIAGHLLHRQG-DEALAVWSSMEKASIKPDA-ITFVLIISAYRYTNLNLVDSCRKL 563 (812)
Q Consensus 489 ~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~-~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~~~g~~~~a~~~ 563 (812)
+++|...+++... .+...|..+...|...|++ ++|++.|++.++ ..|+. ..+..+..++.. .|++++|.+.
T Consensus 84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~--~g~~~~A~~~ 159 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVK--LEPELVEAWNQLGEVYWK--KGDVTSAHTC 159 (474)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHH--HTCHHHHHHH
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHH--cCCHHHHHHH
Confidence 4555556654432 4678899999999999999 999999999999 67774 678888888888 9999999999
Q ss_pred HHHhhhhcCccCCcchHHHHHHHHhhc---------CChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhc--------CC
Q 040319 564 FLSMKTIYNIEPTSEHYASLVSVLGYW---------GFLEEAEETINNMP-FQP-KVSVWRALLDSCRIR--------LN 624 (812)
Q Consensus 564 ~~~m~~~~~~~p~~~~y~~li~~l~~~---------g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~--------~~ 624 (812)
|+...+ +.|+...|..+..+|... |++++|++.+++.. ..| +...|..+..++... |+
T Consensus 160 ~~~al~---~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~ 236 (474)
T 4abn_A 160 FSGALT---HCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKI 236 (474)
T ss_dssp HHHHHT---TCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHHh---hCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccch
Confidence 999986 568888999999999999 99999999999865 555 688999999999988 99
Q ss_pred HHHHHHHHHHHHccCC---CCCchHHHHHhhhhhCCCcchHHHHHHHHHhC
Q 040319 625 TTIGKRVAKHILAMEP---QDPATYILVSNLYSSSGRWHNSELVREDMREK 672 (812)
Q Consensus 625 ~~~a~~~~~~~~~~~p---~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 672 (812)
+++|...++++++++| +++..|..++.+|...|++++|.+.+++..+.
T Consensus 237 ~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 287 (474)
T 4abn_A 237 SQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAAL 287 (474)
T ss_dssp HHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999999999999999 99999999999999999999999999988653
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.08 E-value=1.1e-09 Score=116.98 Aligned_cols=163 Identities=10% Similarity=0.017 Sum_probs=92.1
Q ss_pred hHHHHHHHHhhhcCCHHHHHHHHccCCC-----CC----hhHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCCCH-
Q 040319 474 GVANSMVSMYFKCCNMSNAIKAFNKMPS-----HD----IVSWNGLIAGHLLHRQGDEALAVWSSMEKA----SIKPDA- 539 (812)
Q Consensus 474 ~~~~~Li~~y~k~g~~~~A~~~f~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~pd~- 539 (812)
.+++.+...|...|++++|...|++..+ ++ ..+|+.+...|...|++++|++.|++..+. +..|+.
T Consensus 185 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 264 (383)
T 3ulq_A 185 QCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLP 264 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHH
Confidence 3555666667777777777766665432 11 135666777777777777777777776652 222333
Q ss_pred HHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCC---cchHHHHHHHHhhcCC---hHHHHHHHHhCCCCCC-HHHH
Q 040319 540 ITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPT---SEHYASLVSVLGYWGF---LEEAEETINNMPFQPK-VSVW 612 (812)
Q Consensus 540 ~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~---~~~y~~li~~l~~~g~---~~~A~~~~~~m~~~p~-~~~~ 612 (812)
.++..+...+.. .|++++|.++++...+...-.++ ...+..+..++...|+ +++|+.++++....|+ ..++
T Consensus 265 ~~~~~l~~~~~~--~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~ 342 (383)
T 3ulq_A 265 QAYFLITQIHYK--LGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFA 342 (383)
T ss_dssp HHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHH--CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 455556666666 67777777777665442111111 2234556666666666 6666666666543332 2244
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHcc
Q 040319 613 RALLDSCRIRLNTTIGKRVAKHILAM 638 (812)
Q Consensus 613 ~~ll~~~~~~~~~~~a~~~~~~~~~~ 638 (812)
..+...+...|+.+.|...+++++++
T Consensus 343 ~~la~~y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 343 IDVAKYYHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 44445555555555555555555544
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.07 E-value=2.4e-09 Score=100.76 Aligned_cols=168 Identities=11% Similarity=-0.021 Sum_probs=125.8
Q ss_pred hhHHHHHHHhcCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHhhhcCCHHHHHHHHccCCC---CChhHHHHHHHHHH
Q 040319 439 IALTSVLGVCGTLGFHEMGKQIHSYALKTGFSSDLGVANSMVSMYFKCCNMSNAIKAFNKMPS---HDIVSWNGLIAGHL 515 (812)
Q Consensus 439 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~ 515 (812)
..+..+...+...|+++.|...+..+.+.. +.+..++..+...|...|++++|...|+++.+ .+...|..+...|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 345566677888999999999998887643 34678889999999999999999999988654 46778888999999
Q ss_pred hcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCCcchHHHHHHHHhhcCChH
Q 040319 516 LHRQGDEALAVWSSMEKASIKPD-AITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLE 594 (812)
Q Consensus 516 ~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~ 594 (812)
..|++++|.+.|+++.+ ..|+ ...+..+...+.. .|++++|.++|+.+.+.
T Consensus 88 ~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~a~~~~~--~~~~~~A~~~~~~~~~~------------------------ 139 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAE--ANPINFNVRFRLGVALDN--LGRFDEAIDSFKIALGL------------------------ 139 (186)
T ss_dssp HHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHH------------------------
T ss_pred HhcCHHHHHHHHHHHHh--cCcHhHHHHHHHHHHHHH--cCcHHHHHHHHHHHHhc------------------------
Confidence 99999999999999887 3443 3445555555555 66666666666655541
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCch
Q 040319 595 EAEETINNMPFQPKVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPAT 645 (812)
Q Consensus 595 ~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 645 (812)
.+.+..+|..+...+...|+.+.|...+++++++.|+++..
T Consensus 140 ----------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 180 (186)
T 3as5_A 140 ----------RPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGASVE 180 (186)
T ss_dssp ----------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCCCGG
T ss_pred ----------CccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchhh
Confidence 12245566677777777788888888888888887776543
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.06 E-value=8.1e-10 Score=118.16 Aligned_cols=222 Identities=9% Similarity=-0.029 Sum_probs=161.5
Q ss_pred HhcCccchHHHHHHHHHHHHh----CCCC-chhHHHHHHHHhhhcCCHHHHHHHHccCCC-----CC-----hhHHHHHH
Q 040319 447 VCGTLGFHEMGKQIHSYALKT----GFSS-DLGVANSMVSMYFKCCNMSNAIKAFNKMPS-----HD-----IVSWNGLI 511 (812)
Q Consensus 447 a~~~~~~~~~a~~~~~~~~~~----g~~~-~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~-----~~-----~~~~~~li 511 (812)
.+...|+++.|...+..+.+. +-.+ ...++..+...|...|++++|...+++..+ ++ ..+++.+.
T Consensus 112 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg 191 (383)
T 3ulq_A 112 YELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFA 191 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHH
Confidence 345566677777666666542 1111 345677888889999999988888776543 22 35788899
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCC-CCCH----HHHHHHHHHhcCCCCchHHHHHHHHHHhhhh---cCccC-CcchHHH
Q 040319 512 AGHLLHRQGDEALAVWSSMEKASI-KPDA----ITFVLIISAYRYTNLNLVDSCRKLFLSMKTI---YNIEP-TSEHYAS 582 (812)
Q Consensus 512 ~~~~~~g~~~~A~~l~~~m~~~g~-~pd~----~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~---~~~~p-~~~~y~~ 582 (812)
..|...|++++|++.|++.++..- .++. .++..+...+.. .|++++|.++|+...+. .+..| ....+..
T Consensus 192 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~--~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 269 (383)
T 3ulq_A 192 TNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNS--QSQYEDAIPYFKRAIAVFEESNILPSLPQAYFL 269 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHHHHhhccchhHHHHHHH
Confidence 999999999999999999886311 1121 467778888888 99999999999987651 12213 3667899
Q ss_pred HHHHHhhcCChHHHHHHHHhCC-C-----CCC-HHHHHHHHHHHHhcCC---HHHHHHHHHHHHccCCCCCchHHHHHhh
Q 040319 583 LVSVLGYWGFLEEAEETINNMP-F-----QPK-VSVWRALLDSCRIRLN---TTIGKRVAKHILAMEPQDPATYILVSNL 652 (812)
Q Consensus 583 li~~l~~~g~~~~A~~~~~~m~-~-----~p~-~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 652 (812)
+..++.+.|++++|.+.+++.. + .|. ...+..+...+...|+ .+.|...+++. ...|.....+..++.+
T Consensus 270 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~ 348 (383)
T 3ulq_A 270 ITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKY 348 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHH
Confidence 9999999999999999998854 1 232 2234556666777888 77777777665 3344456678899999
Q ss_pred hhhCCCcchHHHHHHHHHh
Q 040319 653 YSSSGRWHNSELVREDMRE 671 (812)
Q Consensus 653 y~~~g~~~~a~~~~~~m~~ 671 (812)
|...|++++|.+.+++..+
T Consensus 349 y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 349 YHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH
Confidence 9999999999999988754
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.05 E-value=2.1e-09 Score=105.45 Aligned_cols=185 Identities=12% Similarity=0.034 Sum_probs=87.1
Q ss_pred hhHHHHHHHHhhhcCCHHHHHHHHccCCC----CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHH
Q 040319 473 LGVANSMVSMYFKCCNMSNAIKAFNKMPS----HDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDA-ITFVLIIS 547 (812)
Q Consensus 473 ~~~~~~Li~~y~k~g~~~~A~~~f~~~~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~ 547 (812)
+..+..+...|.+.|++++|...|++..+ ++...|..+...|...|++++|++.|++..+ ..|+. ..+..+..
T Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIK--KNYNLANAYIGKSA 84 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHH--hCcchHHHHHHHHH
Confidence 34445555555555555555555554322 3444444455555555555555555555555 44443 33444444
Q ss_pred HhcCCCCchHHHHHHHHHHhhhhcCccCC-c-------chHHHHHHHHhhcCChHHHHHHHHhCC-CCCC---HHHHHHH
Q 040319 548 AYRYTNLNLVDSCRKLFLSMKTIYNIEPT-S-------EHYASLVSVLGYWGFLEEAEETINNMP-FQPK---VSVWRAL 615 (812)
Q Consensus 548 a~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~-------~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p~---~~~~~~l 615 (812)
.+.. .|++++|.+.|+...+ +.|+ . ..|..+...+.+.|++++|++.+++.. ..|+ ...|..+
T Consensus 85 ~~~~--~~~~~~A~~~~~~al~---~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l 159 (228)
T 4i17_A 85 AYRD--MKNNQEYIATLTEGIK---AVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSL 159 (228)
T ss_dssp HHHH--TTCHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHH
T ss_pred HHHH--cccHHHHHHHHHHHHH---HCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHH
Confidence 4444 5555555555555544 1232 1 234444445555555555555554432 3343 2233333
Q ss_pred HHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCCcchHHHHHHHHHh
Q 040319 616 LDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWHNSELVREDMRE 671 (812)
Q Consensus 616 l~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 671 (812)
...+. ..+...++++..+.+.++..|. .......|.+++|...+++..+
T Consensus 160 ~~~~~-----~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~~~A~~~~~~a~~ 208 (228)
T 4i17_A 160 GVLFY-----NNGADVLRKATPLASSNKEKYA--SEKAKADAAFKKAVDYLGEAVT 208 (228)
T ss_dssp HHHHH-----HHHHHHHHHHGGGTTTCHHHHH--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-----HHHHHHHHHHHhcccCCHHHHH--HHHHHHHHHHHHHHHHHHHHhh
Confidence 33332 2233334444444443322222 2223333444777777777654
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.05 E-value=1.9e-10 Score=118.78 Aligned_cols=243 Identities=12% Similarity=0.014 Sum_probs=141.4
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhcCCC---------CCCceeeeHHHHHHHHHcCChhhHHHHHHHhcccCCCCCCh
Q 040319 368 NDCIEAALLDMLTRCGRMADAEKMFYRWPT---------DRDDSIIWTSMICGYARSGKPEHAILLFHQSQSEATVVPDE 438 (812)
Q Consensus 368 ~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~---------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~ 438 (812)
+..++..+...|...|++++|...|+++.. .+....+|..+...|...|++++|+..|++... ..
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~----- 99 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALA-IR----- 99 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HH-----
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-HH-----
Confidence 456788899999999999999999988652 112245677888889999999999999988765 10
Q ss_pred hhHHHHHHHhcCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHhhhcCCHHHHHHHHccCCC-----------CChhHH
Q 040319 439 IALTSVLGVCGTLGFHEMGKQIHSYALKTGFSSDLGVANSMVSMYFKCCNMSNAIKAFNKMPS-----------HDIVSW 507 (812)
Q Consensus 439 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~-----------~~~~~~ 507 (812)
........+....++..+...|...|++++|...|++..+ .....|
T Consensus 100 -----------------------~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 156 (311)
T 3nf1_A 100 -----------------------EKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQL 156 (311)
T ss_dssp -----------------------HHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred -----------------------HHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 0000000011223344444555555555555555443321 122445
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHC------CCCCCH-HHHHHHHHHhcCCCCchHHHHHHHHHHhhhhc------Ccc
Q 040319 508 NGLIAGHLLHRQGDEALAVWSSMEKA------SIKPDA-ITFVLIISAYRYTNLNLVDSCRKLFLSMKTIY------NIE 574 (812)
Q Consensus 508 ~~li~~~~~~g~~~~A~~l~~~m~~~------g~~pd~-~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~------~~~ 574 (812)
..+...|...|++++|++.|+++.+. +..|+. .++..+...+.. .|++++|.++|+.+.+.. ...
T Consensus 157 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~al~~~~~~~~~~~~ 234 (311)
T 3nf1_A 157 NNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLK--QGKFKQAETLYKEILTRAHEREFGSVD 234 (311)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHH--HTCHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 56666666666677776666666553 113333 345555556666 677777777776665411 111
Q ss_pred CC-------cchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCC
Q 040319 575 PT-------SEHYASLVSVLGYWGFLEEAEETINNMP-FQP-KVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQ 641 (812)
Q Consensus 575 p~-------~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~ 641 (812)
|. ...+..+...+...+.+.+|...++... ..| +..+|..+...+...|+.++|...+++++++.|+
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 235 DENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp ---CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred cchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 11 1222333344455666677777777655 344 4668888999999999999999999999998875
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=98.97 E-value=4.3e-08 Score=104.13 Aligned_cols=194 Identities=13% Similarity=0.027 Sum_probs=126.8
Q ss_pred HHHHHHHhhhcCCHHHHHHHHccCCC-------C----ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC--C-C-HH
Q 040319 476 ANSMVSMYFKCCNMSNAIKAFNKMPS-------H----DIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIK--P-D-AI 540 (812)
Q Consensus 476 ~~~Li~~y~k~g~~~~A~~~f~~~~~-------~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~--p-d-~~ 540 (812)
...+...|...|++++|...+++... + ....+..+...|...|++++|...+++.....-. | . ..
T Consensus 96 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 175 (373)
T 1hz4_A 96 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ 175 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHH
Confidence 44566667777777777777665432 1 1234556677778888888888888887763211 1 1 23
Q ss_pred HHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCCcchHH-----HHHHHHhhcCChHHHHHHHHhCC-CCCC-----H
Q 040319 541 TFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYA-----SLVSVLGYWGFLEEAEETINNMP-FQPK-----V 609 (812)
Q Consensus 541 t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~-----~li~~l~~~g~~~~A~~~~~~m~-~~p~-----~ 609 (812)
++..+...+.. .|++++|..+++.......-......+. ..+..+...|++++|...+++.. ..|. .
T Consensus 176 ~~~~la~~~~~--~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 253 (373)
T 1hz4_A 176 CLAMLIQCSLA--RGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQ 253 (373)
T ss_dssp HHHHHHHHHHH--HTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGH
T ss_pred HHHHHHHHHHH--cCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhH
Confidence 45555556666 7888888888887764211111111222 23344678899999998888864 2221 2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCC------CchHHHHHhhhhhCCCcchHHHHHHHHHh
Q 040319 610 SVWRALLDSCRIRLNTTIGKRVAKHILAMEPQD------PATYILVSNLYSSSGRWHNSELVREDMRE 671 (812)
Q Consensus 610 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 671 (812)
..+..+...+...|+.+.|...++++++..+.. ...+..++.+|...|+.++|.+.+++...
T Consensus 254 ~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 254 GQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 345666777888899999999888887764331 13677788999999999999988877643
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=1.3e-09 Score=124.62 Aligned_cols=163 Identities=14% Similarity=0.146 Sum_probs=142.5
Q ss_pred chhHHHHHHHHhhhcCCHHHHHHHHccCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHH
Q 040319 472 DLGVANSMVSMYFKCCNMSNAIKAFNKMPS---HDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDA-ITFVLIIS 547 (812)
Q Consensus 472 ~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~ 547 (812)
+...++.|...|.+.|++++|...|++..+ .+..+|+.+...|.+.|++++|++.|++.++ +.|+. ..+..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~--l~P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 567888899999999999999999988764 4578899999999999999999999999999 78876 67888888
Q ss_pred HhcCCCCchHHHHHHHHHHhhhhcCccCC-cchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCC
Q 040319 548 AYRYTNLNLVDSCRKLFLSMKTIYNIEPT-SEHYASLVSVLGYWGFLEEAEETINNMP-FQP-KVSVWRALLDSCRIRLN 624 (812)
Q Consensus 548 a~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~ 624 (812)
++.. .|++++|++.|++..+ +.|+ ...|..+..+|.+.|++++|++.+++.. +.| +...|..|...+...|+
T Consensus 86 ~l~~--~g~~~~A~~~~~kAl~---l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~ 160 (723)
T 4gyw_A 86 TLKE--MQDVQGALQCYTRAIQ---INPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCD 160 (723)
T ss_dssp HHHH--TTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTC
T ss_pred HHHH--cCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhccc
Confidence 8888 9999999999999886 4565 7889999999999999999999999865 667 57789999999999999
Q ss_pred HHHHHHHHHHHHccCCC
Q 040319 625 TTIGKRVAKHILAMEPQ 641 (812)
Q Consensus 625 ~~~a~~~~~~~~~~~p~ 641 (812)
.+.|++.+++++++.|+
T Consensus 161 ~~~A~~~~~kal~l~~~ 177 (723)
T 4gyw_A 161 WTDYDERMKKLVSIVAD 177 (723)
T ss_dssp CTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhChh
Confidence 99999999999887654
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.93 E-value=3.1e-09 Score=108.69 Aligned_cols=185 Identities=8% Similarity=-0.053 Sum_probs=128.0
Q ss_pred HHhhhcCCHHHHHHHHccCCC-------C--ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-------HHHHHH
Q 040319 481 SMYFKCCNMSNAIKAFNKMPS-------H--DIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPD-------AITFVL 544 (812)
Q Consensus 481 ~~y~k~g~~~~A~~~f~~~~~-------~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-------~~t~~~ 544 (812)
..|...|++++|...|.+..+ + ...+|+.+...|...|++++|+..|++.++ +.|+ ..++..
T Consensus 45 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~--l~~~~g~~~~~a~~~~~ 122 (292)
T 1qqe_A 45 TIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQ--IFTHRGQFRRGANFKFE 122 (292)
T ss_dssp HHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHHHTTCHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HHHHcCCHHHHHHHHHH
Confidence 456677777777777665432 1 145788888888888999999888888876 3322 246677
Q ss_pred HHHHhcCCCC-chHHHHHHHHHHhhhhcCccCC----cchHHHHHHHHhhcCChHHHHHHHHhCC-CCCCH--------H
Q 040319 545 IISAYRYTNL-NLVDSCRKLFLSMKTIYNIEPT----SEHYASLVSVLGYWGFLEEAEETINNMP-FQPKV--------S 610 (812)
Q Consensus 545 ll~a~~~~~~-g~~~~a~~~~~~m~~~~~~~p~----~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p~~--------~ 610 (812)
+...+.. . |++++|...|++..+...-..+ ...|..+..+|.+.|++++|++.+++.. ..|+. .
T Consensus 123 lg~~~~~--~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 200 (292)
T 1qqe_A 123 LGEILEN--DLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKD 200 (292)
T ss_dssp HHHHHHH--TTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHH
T ss_pred HHHHHHH--hhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHH
Confidence 7777777 7 9999999999887762110111 3568889999999999999999998854 33321 1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCch-----HHHHHhhhh--hCCCcchHHHHHHHH
Q 040319 611 VWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPAT-----YILVSNLYS--SSGRWHNSELVREDM 669 (812)
Q Consensus 611 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~-----~~~l~~~y~--~~g~~~~a~~~~~~m 669 (812)
.|..+..++...|+.+.|...++++++++|+.... +..++..|. ..+++++|.+.++++
T Consensus 201 ~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~ 266 (292)
T 1qqe_A 201 YFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNF 266 (292)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccC
Confidence 56667777888999999999999999999986553 334555554 456788887777543
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=98.91 E-value=5.3e-09 Score=105.98 Aligned_cols=221 Identities=13% Similarity=0.071 Sum_probs=151.4
Q ss_pred cCccchHHHHHHHHHHHHh-------CCCCchhHHHHHHHHhhhcCCHHHHHHHHccCCC-----------CChhHHHHH
Q 040319 449 GTLGFHEMGKQIHSYALKT-------GFSSDLGVANSMVSMYFKCCNMSNAIKAFNKMPS-----------HDIVSWNGL 510 (812)
Q Consensus 449 ~~~~~~~~a~~~~~~~~~~-------g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~-----------~~~~~~~~l 510 (812)
...|+++.|...+...++. ..+....++..+...|...|++++|...|++..+ ....+|..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 3456777777777666642 2233567788899999999999999998876542 224578888
Q ss_pred HHHHHhcCChHHHHHHHHHHHHC------CCCCCH-HHHHHHHHHhcCCCCchHHHHHHHHHHhhhhc-----CccC-Cc
Q 040319 511 IAGHLLHRQGDEALAVWSSMEKA------SIKPDA-ITFVLIISAYRYTNLNLVDSCRKLFLSMKTIY-----NIEP-TS 577 (812)
Q Consensus 511 i~~~~~~g~~~~A~~l~~~m~~~------g~~pd~-~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~-----~~~p-~~ 577 (812)
...|...|++++|++.|++..+. .-.|+. .++..+...+.. .|++++|..+|+.+.+.. +-.| ..
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 169 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQN--QGKAEEVEYYYRRALEIYATRLGPDDPNVA 169 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHT--TTCHHHHHHHHHHHHHHHHHHSCTTCHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHHHHHhcCCCCHHHH
Confidence 99999999999999999999873 113443 567777778888 999999999999887631 1123 25
Q ss_pred chHHHHHHHHhhcCChHHHHHHHHhCC----------CCCC-HHHHHHHHHHHHhcCC------HHHHHHHHHHHHccCC
Q 040319 578 EHYASLVSVLGYWGFLEEAEETINNMP----------FQPK-VSVWRALLDSCRIRLN------TTIGKRVAKHILAMEP 640 (812)
Q Consensus 578 ~~y~~li~~l~~~g~~~~A~~~~~~m~----------~~p~-~~~~~~ll~~~~~~~~------~~~a~~~~~~~~~~~p 640 (812)
..+..+..++.+.|++++|.+.+++.. ..|. ...|..+.......+. +..+...++......|
T Consensus 170 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (283)
T 3edt_B 170 KTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSP 249 (283)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCH
Confidence 678888999999999999999887643 1232 2344444333333222 2333333333333445
Q ss_pred CCCchHHHHHhhhhhCCCcchHHHHHHHHHh
Q 040319 641 QDPATYILVSNLYSSSGRWHNSELVREDMRE 671 (812)
Q Consensus 641 ~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 671 (812)
..+..+..++.+|...|++++|.+.+++..+
T Consensus 250 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 250 TVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5667899999999999999999999988653
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.88 E-value=2.8e-08 Score=99.62 Aligned_cols=204 Identities=9% Similarity=-0.041 Sum_probs=118.5
Q ss_pred chhHHHHHHHHhhhcCCHHHHHHHHccCCC--CC----hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH----HH
Q 040319 472 DLGVANSMVSMYFKCCNMSNAIKAFNKMPS--HD----IVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDA----IT 541 (812)
Q Consensus 472 ~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~--~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~----~t 541 (812)
+...+-.+...+.+.|++++|...|+++.+ |+ ...|..+...|...|++++|+..|++.++ ..|+. ..
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~--~~p~~~~~~~a 91 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQ--IYQIDPRVPQA 91 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCTTHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHH--HCCCCchhHHH
Confidence 344444555556666666666666665543 22 34555556666666666666666666666 33421 12
Q ss_pred HHHHHHHhcC------CCCchHHHHHHHHHHhhhhcCccCCc-chHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHH
Q 040319 542 FVLIISAYRY------TNLNLVDSCRKLFLSMKTIYNIEPTS-EHYASLVSVLGYWGFLEEAEETINNMPFQPKVSVWRA 614 (812)
Q Consensus 542 ~~~ll~a~~~------~~~g~~~~a~~~~~~m~~~~~~~p~~-~~y~~li~~l~~~g~~~~A~~~~~~m~~~p~~~~~~~ 614 (812)
+..+..++.. ...|++++|...|+.+.+. .|+. ..+..+..+....+.+ ...+..
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~p~~~~~~~a~~~~~~~~~~~---------------~~~~~~ 153 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR---YPNHELVDDATQKIRELRAKL---------------ARKQYE 153 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH---CTTCTTHHHHHHHHHHHHHHH---------------HHHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH---CcCchhHHHHHHHHHHHHHHH---------------HHHHHH
Confidence 2222222211 0035555555555555542 2321 1111111110000000 011355
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHccCCCCC---chHHHHHhhhhhC----------CCcchHHHHHHHHHhCCCCCCCcee
Q 040319 615 LLDSCRIRLNTTIGKRVAKHILAMEPQDP---ATYILVSNLYSSS----------GRWHNSELVREDMREKGFRKHPSRS 681 (812)
Q Consensus 615 ll~~~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~y~~~----------g~~~~a~~~~~~m~~~g~~~~~~~s 681 (812)
+...+...|+.+.|...++++++..|+++ .++..++.+|... |++++|...+++..+.. |
T Consensus 154 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~----p--- 226 (261)
T 3qky_A 154 AARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF----P--- 226 (261)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC----T---
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC----C---
Confidence 67778899999999999999999999854 5788999999977 89999999999885532 2
Q ss_pred EEEECCEEEEEeeCCCCCcchHHHHHHHHHHHHHHHH
Q 040319 682 WIIHQNKVHSFYVRDKSHPREKDIYSGLEILILECLK 718 (812)
Q Consensus 682 ~~~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~~~~ 718 (812)
.+|...+....+.++...+.+
T Consensus 227 ----------------~~~~~~~a~~~l~~~~~~~~~ 247 (261)
T 3qky_A 227 ----------------DSPLLRTAEELYTRARQRLTE 247 (261)
T ss_dssp ----------------TCTHHHHHHHHHHHHHHHHHH
T ss_pred ----------------CChHHHHHHHHHHHHHHHHHH
Confidence 356666777777777776654
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=98.87 E-value=1e-08 Score=109.31 Aligned_cols=220 Identities=10% Similarity=-0.068 Sum_probs=141.6
Q ss_pred hcCccchHHHHHHHHHHHHhC--CC---CchhHHHHHHHHhhhcCCHHHHHHHHccCCC-----CC-----hhHHHHHHH
Q 040319 448 CGTLGFHEMGKQIHSYALKTG--FS---SDLGVANSMVSMYFKCCNMSNAIKAFNKMPS-----HD-----IVSWNGLIA 512 (812)
Q Consensus 448 ~~~~~~~~~a~~~~~~~~~~g--~~---~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~-----~~-----~~~~~~li~ 512 (812)
+...|+++.|...+..+.+.. .. ....++..+...|...|+++.|...+++..+ ++ ..+++.+..
T Consensus 111 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~ 190 (378)
T 3q15_A 111 EFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAG 190 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHH
T ss_pred HHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHH
Confidence 445667777777776665421 11 1244666777788888888877776665432 11 346777888
Q ss_pred HHHhcCChHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHhcCCCCchHHHHHHHHHHhhhhc---CccCCcchHHHHH
Q 040319 513 GHLLHRQGDEALAVWSSMEKA----SIKPD-AITFVLIISAYRYTNLNLVDSCRKLFLSMKTIY---NIEPTSEHYASLV 584 (812)
Q Consensus 513 ~~~~~g~~~~A~~l~~~m~~~----g~~pd-~~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~---~~~p~~~~y~~li 584 (812)
.|...|++++|++.|++.++. +-.+. ..++..+...+.. .|++++|.++|+...+.. +.+.....+..+.
T Consensus 191 ~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~--~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 268 (378)
T 3q15_A 191 NYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDR--SGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLS 268 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH--HTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHH
Confidence 888888888888888877652 11111 1456666667777 888888888888766411 2222256677788
Q ss_pred HHHhhcCChHHHHHHHHhCC------CCCC-HHHHHHHHHHHHhcCC---HHHHHHHHHHHHccCCCCCchHHHHHhhhh
Q 040319 585 SVLGYWGFLEEAEETINNMP------FQPK-VSVWRALLDSCRIRLN---TTIGKRVAKHILAMEPQDPATYILVSNLYS 654 (812)
Q Consensus 585 ~~l~~~g~~~~A~~~~~~m~------~~p~-~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~ 654 (812)
.++.+.|++++|.+.+++.. -.|. ...+..+...+...++ ++.|...+++. ...|.....+..++.+|.
T Consensus 269 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~ 347 (378)
T 3q15_A 269 WTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSAAAVFE 347 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHH
Confidence 88888888888888887743 1232 2334444444556677 66666666552 223334556778899999
Q ss_pred hCCCcchHHHHHHHHH
Q 040319 655 SSGRWHNSELVREDMR 670 (812)
Q Consensus 655 ~~g~~~~a~~~~~~m~ 670 (812)
..|++++|.+.+++..
T Consensus 348 ~~g~~~~A~~~~~~al 363 (378)
T 3q15_A 348 SSCHFEQAAAFYRKVL 363 (378)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHH
Confidence 9999999988887763
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=4.3e-09 Score=95.37 Aligned_cols=140 Identities=12% Similarity=0.015 Sum_probs=86.7
Q ss_pred HHHhhhcCCHHHHHHHHccCCCC---ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCch
Q 040319 480 VSMYFKCCNMSNAIKAFNKMPSH---DIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDAITFVLIISAYRYTNLNL 556 (812)
Q Consensus 480 i~~y~k~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~g~ 556 (812)
..+|...|++++|...|...... +...|..+...|.+.|++++|++.|++.++ +.|+.
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~--~~p~~----------------- 64 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYIN--VQERD----------------- 64 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTC-----------------
T ss_pred HHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCC-----------------
Confidence 34455556666666666554441 233444555566666666666666666655 44443
Q ss_pred HHHHHHHHHHhhhhcCccCCcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHH-HHH
Q 040319 557 VDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLEEAEETINNMP-FQP-KVSVWRALLDSCRIRLNTTIGKR-VAK 633 (812)
Q Consensus 557 ~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~-~~~ 633 (812)
...|..+..+|.+.|++++|+..+++.. +.| +..+|..+...+...|+.+.|.. .++
T Consensus 65 --------------------~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~ 124 (150)
T 4ga2_A 65 --------------------PKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVE 124 (150)
T ss_dssp --------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHH
T ss_pred --------------------HHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 3344444444445555555555554432 345 46677778888888888766554 469
Q ss_pred HHHccCCCCCchHHHHHhhhhhCCC
Q 040319 634 HILAMEPQDPATYILVSNLYSSSGR 658 (812)
Q Consensus 634 ~~~~~~p~~~~~~~~l~~~y~~~g~ 658 (812)
++++++|+++.+|...+.++...|+
T Consensus 125 ~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 125 RAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 9999999999999999999988885
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=98.85 E-value=9.5e-08 Score=101.70 Aligned_cols=227 Identities=9% Similarity=-0.030 Sum_probs=156.5
Q ss_pred HHHHcCChhhHHHHHHHhcccCCCCCCh----hhHHHHHHHhcCccchHHHHHHHHHHHHhC--C---C-CchhHHHHHH
Q 040319 411 GYARSGKPEHAILLFHQSQSEATVVPDE----IALTSVLGVCGTLGFHEMGKQIHSYALKTG--F---S-SDLGVANSMV 480 (812)
Q Consensus 411 ~~~~~g~~~~A~~~~~~m~~~~g~~p~~----~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g--~---~-~~~~~~~~Li 480 (812)
.+...|++++|+..|++......-.++. .++..+-..+...|+++.|...+..+.+.. . . ....+++.+.
T Consensus 110 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg 189 (378)
T 3q15_A 110 YEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIA 189 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHH
T ss_pred HHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHH
Confidence 3456677777777776665411111221 234455556666677777776666655421 1 1 1245667788
Q ss_pred HHhhhcCCHHHHHHHHccCCC-----CC----hhHHHHHHHHHHhcCChHHHHHHHHHHHHCC---CCCC-HHHHHHHHH
Q 040319 481 SMYFKCCNMSNAIKAFNKMPS-----HD----IVSWNGLIAGHLLHRQGDEALAVWSSMEKAS---IKPD-AITFVLIIS 547 (812)
Q Consensus 481 ~~y~k~g~~~~A~~~f~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g---~~pd-~~t~~~ll~ 547 (812)
..|...|++++|...|++..+ ++ ..+++.+...|...|++++|++.|++..+.. ..|+ ..++..+..
T Consensus 190 ~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 269 (378)
T 3q15_A 190 GNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSW 269 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHH
Confidence 889999999999888876543 22 3467888889999999999999999887610 1233 466777777
Q ss_pred HhcCCCCchHHHHHHHHHHhhhhcCccCC---cchHHHHHHHHhhcCC---hHHHHHHHHhCCCCCC-HHHHHHHHHHHH
Q 040319 548 AYRYTNLNLVDSCRKLFLSMKTIYNIEPT---SEHYASLVSVLGYWGF---LEEAEETINNMPFQPK-VSVWRALLDSCR 620 (812)
Q Consensus 548 a~~~~~~g~~~~a~~~~~~m~~~~~~~p~---~~~y~~li~~l~~~g~---~~~A~~~~~~m~~~p~-~~~~~~ll~~~~ 620 (812)
.+.. .|++++|..+++...+...-.++ ...+..+...+...|+ +++|+..+++....|+ ...+..+...+.
T Consensus 270 ~~~~--~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~ 347 (378)
T 3q15_A 270 TLCK--AGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVFE 347 (378)
T ss_dssp HHHH--TTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHH--CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHH
Confidence 8888 99999999999988763322222 3456777778888888 8999999998765444 346667777899
Q ss_pred hcCCHHHHHHHHHHHHccC
Q 040319 621 IRLNTTIGKRVAKHILAME 639 (812)
Q Consensus 621 ~~~~~~~a~~~~~~~~~~~ 639 (812)
..|+.+.|...+++++++.
T Consensus 348 ~~g~~~~A~~~~~~al~~~ 366 (378)
T 3q15_A 348 SSCHFEQAAAFYRKVLKAQ 366 (378)
T ss_dssp HTTCHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHH
Confidence 9999999999999887653
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.82 E-value=3.1e-07 Score=91.89 Aligned_cols=175 Identities=11% Similarity=0.027 Sum_probs=123.7
Q ss_pred HHHHHccCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcCCCCchHHHHHHHHHHh
Q 040319 492 AIKAFNKMPS---HDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDA-ITFVLIISAYRYTNLNLVDSCRKLFLSM 567 (812)
Q Consensus 492 A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~~~g~~~~a~~~~~~m 567 (812)
|...|++... ++..++..+..++...|++++|++++.+.+..|-.++. ..+..++..+.. .|+.+.|.+.++.|
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~--~~r~d~A~k~l~~~ 162 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALL--NNNVSTASTIFDNY 162 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHH--TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHH--CCCHHHHHHHHHHH
Confidence 5566665542 45556667778888888888888888887664432344 445556666777 88888888888888
Q ss_pred hhhcCccC-----CcchHHHHHHH----HhhcCChHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHc
Q 040319 568 KTIYNIEP-----TSEHYASLVSV----LGYWGFLEEAEETINNMP-FQPKVSVWRALLDSCRIRLNTTIGKRVAKHILA 637 (812)
Q Consensus 568 ~~~~~~~p-----~~~~y~~li~~----l~~~g~~~~A~~~~~~m~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 637 (812)
.+ ..| +..+...|..+ ....+++.+|..+|+++. ..|+...-..|++++...|++++|+..++.+++
T Consensus 163 ~~---~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 163 TN---AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HH---HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred Hh---cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 76 345 23344444433 333448999999999875 345533334455578889999999999998888
Q ss_pred c----------CCCCCchHHHHHhhhhhCCCcchHHHHHHHHHhCC
Q 040319 638 M----------EPQDPATYILVSNLYSSSGRWHNSELVREDMREKG 673 (812)
Q Consensus 638 ~----------~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g 673 (812)
. +|+|+.++..++.++...|+ +|.+++.++++..
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 6 48888888888888888887 8999999987643
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=4.9e-08 Score=99.35 Aligned_cols=172 Identities=6% Similarity=-0.056 Sum_probs=134.1
Q ss_pred HHHHHHccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcCCCCchHHHHHHHHHHhhh
Q 040319 491 NAIKAFNKMPSHDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDA-ITFVLIISAYRYTNLNLVDSCRKLFLSMKT 569 (812)
Q Consensus 491 ~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~ 569 (812)
.....+......+...+..+...+...|++++|+..|++.++ ..|+. ..+..+...+.. .|++++|...++.+..
T Consensus 104 ~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~la~~~~~--~g~~~~A~~~l~~~~~ 179 (287)
T 3qou_A 104 AIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQ--LSNQNGEIGLLLAETLIA--LNRSEDAEAVLXTIPL 179 (287)
T ss_dssp HHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HTTSCHHHHHHHHHHHHH--TTCHHHHHHHHTTSCG
T ss_pred HHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCcchhHHHHHHHHHHH--CCCHHHHHHHHHhCch
Confidence 334444444444556677778888889999999999999988 67766 556667777778 8999999999988865
Q ss_pred hcCccCCcchHHHH-HHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCC--Cc
Q 040319 570 IYNIEPTSEHYASL-VSVLGYWGFLEEAEETINNMP-FQP-KVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQD--PA 644 (812)
Q Consensus 570 ~~~~~p~~~~y~~l-i~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~--~~ 644 (812)
..|+....... .-.+.+.|+.++|.+.+++.. ..| +...+..+...+...|+.+.|...++++++.+|++ +.
T Consensus 180 ---~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~ 256 (287)
T 3qou_A 180 ---QDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQ 256 (287)
T ss_dssp ---GGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGH
T ss_pred ---hhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccch
Confidence 34654333322 233667788888888887754 455 67899999999999999999999999999999998 88
Q ss_pred hHHHHHhhhhhCCCcchHHHHHHHH
Q 040319 645 TYILVSNLYSSSGRWHNSELVREDM 669 (812)
Q Consensus 645 ~~~~l~~~y~~~g~~~~a~~~~~~m 669 (812)
++..|+.+|...|+.++|...+++.
T Consensus 257 a~~~l~~~~~~~g~~~~a~~~~r~a 281 (287)
T 3qou_A 257 TRXTFQEILAALGTGDALASXYRRQ 281 (287)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 9999999999999999998876653
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.78 E-value=7.1e-08 Score=110.91 Aligned_cols=167 Identities=10% Similarity=-0.085 Sum_probs=120.2
Q ss_pred hhcCCHHHHHHHHccCC-----------CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcC
Q 040319 484 FKCCNMSNAIKAFNKMP-----------SHDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDA-ITFVLIISAYRY 551 (812)
Q Consensus 484 ~k~g~~~~A~~~f~~~~-----------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~ 551 (812)
...|++++|.+.|++.. ..+...|..+...|.+.|++++|++.|++.++ ..|+. ..+..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAE--RVGWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HHCCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhc--cCcchHHHHHHHHHHHHH
Confidence 55677777777666554 23456677777777888888888888888877 56655 455666666666
Q ss_pred CCCchHHHHHHHHHHhhhhcCccCC-cchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHH
Q 040319 552 TNLNLVDSCRKLFLSMKTIYNIEPT-SEHYASLVSVLGYWGFLEEAEETINNMP-FQP-KVSVWRALLDSCRIRLNTTIG 628 (812)
Q Consensus 552 ~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a 628 (812)
.|++++|.+.|++..+ +.|+ ...|..+..+|.+.|++++ ++.+++.. ..| +...|..+..++...|+.++|
T Consensus 480 --~g~~~~A~~~~~~al~---l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A 553 (681)
T 2pzi_A 480 --TGDYDSATKHFTEVLD---TFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGA 553 (681)
T ss_dssp --HTCHHHHHHHHHHHHH---HSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred --cCCHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHH
Confidence 7888888888887765 3453 6677778888888888888 77777754 445 566788888888888888888
Q ss_pred HHHHHHHHccCCCCCchHHHHHhhhhhCCC
Q 040319 629 KRVAKHILAMEPQDPATYILVSNLYSSSGR 658 (812)
Q Consensus 629 ~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~ 658 (812)
...++++++++|+++.++..++.+|...|+
T Consensus 554 ~~~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 554 VRTLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHHHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 888888888888888888888888877665
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.77 E-value=1.1e-07 Score=92.75 Aligned_cols=183 Identities=11% Similarity=-0.021 Sum_probs=119.4
Q ss_pred hhHHHHHHHHhhhcCCHHHHHHHHccCCC--CC----hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH----HH
Q 040319 473 LGVANSMVSMYFKCCNMSNAIKAFNKMPS--HD----IVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDAI----TF 542 (812)
Q Consensus 473 ~~~~~~Li~~y~k~g~~~~A~~~f~~~~~--~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~----t~ 542 (812)
...+..+...+.+.|++++|...|+++.. |+ ...+..+..+|...|++++|+..|++.++ ..|+.. .+
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~--~~P~~~~~~~a~ 81 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIR--LNPTHPNIDYVM 81 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCTTHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--HCcCCCcHHHHH
Confidence 34455567778888899999888887764 43 24677788888888999999999988888 556542 23
Q ss_pred HHHHHHhcC----------------CCCchHHHHHHHHHHhhhhcCccCCc-chHHHHHHHHhhcCChHHHHHHHHhCCC
Q 040319 543 VLIISAYRY----------------TNLNLVDSCRKLFLSMKTIYNIEPTS-EHYASLVSVLGYWGFLEEAEETINNMPF 605 (812)
Q Consensus 543 ~~ll~a~~~----------------~~~g~~~~a~~~~~~m~~~~~~~p~~-~~y~~li~~l~~~g~~~~A~~~~~~m~~ 605 (812)
..+..++.. ...|+.++|...|+.+.+. .|+. ..+..... .+.+.+..
T Consensus 82 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~P~~~~a~~a~~~----l~~~~~~~-------- 146 (225)
T 2yhc_A 82 YMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG---YPNSQYTTDATKR----LVFLKDRL-------- 146 (225)
T ss_dssp HHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT---CTTCTTHHHHHHH----HHHHHHHH--------
T ss_pred HHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH---CcCChhHHHHHHH----HHHHHHHH--------
Confidence 223333321 0134555666666555542 2321 11111110 00000000
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCC---chHHHHHhhhhhCCCcchHHHHHHHHHhCCCC
Q 040319 606 QPKVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDP---ATYILVSNLYSSSGRWHNSELVREDMREKGFR 675 (812)
Q Consensus 606 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~ 675 (812)
......+...+...|+.+.|...++++++..|+++ .++..++.+|.+.|++++|.+.++.+...+..
T Consensus 147 ---~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 147 ---AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSN 216 (225)
T ss_dssp ---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred ---HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence 00112345567889999999999999999999876 56899999999999999999999998876553
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=98.73 E-value=7.5e-07 Score=94.46 Aligned_cols=194 Identities=9% Similarity=0.000 Sum_probs=99.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcCCC------CC--C-ceeeeHHHHHHHHHcCChhhHHHHHHHhcccCCCC--C--Ch
Q 040319 372 EAALLDMLTRCGRMADAEKMFYRWPT------DR--D-DSIIWTSMICGYARSGKPEHAILLFHQSQSEATVV--P--DE 438 (812)
Q Consensus 372 ~~~Li~~y~~~g~~~~A~~~f~~~~~------~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~--p--~~ 438 (812)
...+...|...|++++|...|++... .+ + ....+..+...+...|++++|...+++... .... + ..
T Consensus 96 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~~~~~~~~~~ 174 (373)
T 1hz4_A 96 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIE-VLSSYQPQQQL 174 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HTTTSCGGGGH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH-HhhccCcHHHH
Confidence 34455556666776666666654321 11 1 122344555666677777777777766543 1110 1 11
Q ss_pred hhHHHHHHHhcCccchHHHHHHHHHHHHhCCCCc--hhHH-H---HHHHHhhhcCCHHHHHHHHccCCCCC-------hh
Q 040319 439 IALTSVLGVCGTLGFHEMGKQIHSYALKTGFSSD--LGVA-N---SMVSMYFKCCNMSNAIKAFNKMPSHD-------IV 505 (812)
Q Consensus 439 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~-~---~Li~~y~k~g~~~~A~~~f~~~~~~~-------~~ 505 (812)
.++..+...+...|+++.|...+.......-.++ .... . .++..+...|++++|...+++...++ ..
T Consensus 175 ~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 254 (373)
T 1hz4_A 175 QCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQG 254 (373)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHH
Confidence 2344444555666666666666666554311111 1111 1 23344667777777777777665422 12
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCCCHH-HHHHHHHHhcCCCCchHHHHHHHHHHhh
Q 040319 506 SWNGLIAGHLLHRQGDEALAVWSSMEKA----SIKPDAI-TFVLIISAYRYTNLNLVDSCRKLFLSMK 568 (812)
Q Consensus 506 ~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~pd~~-t~~~ll~a~~~~~~g~~~~a~~~~~~m~ 568 (812)
.+..+...+...|++++|...+++.... |..++.. .+..+..++.. .|+.++|...++...
T Consensus 255 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~--~g~~~~A~~~l~~al 320 (373)
T 1hz4_A 255 QWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQ--AGRKSDAQRVLLDAL 320 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH--HTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHH--hCCHHHHHHHHHHHH
Confidence 3455666777777777777777766542 1111111 23333334444 555555555555443
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.71 E-value=1.1e-07 Score=97.06 Aligned_cols=193 Identities=7% Similarity=-0.082 Sum_probs=128.5
Q ss_pred hcCccchHHHHHHHHHHHHh----CCCC-chhHHHHHHHHhhhcCCHHHHHHHHccCCC-----CC----hhHHHHHHHH
Q 040319 448 CGTLGFHEMGKQIHSYALKT----GFSS-DLGVANSMVSMYFKCCNMSNAIKAFNKMPS-----HD----IVSWNGLIAG 513 (812)
Q Consensus 448 ~~~~~~~~~a~~~~~~~~~~----g~~~-~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~-----~~----~~~~~~li~~ 513 (812)
+...|+++.|...+..+.+. |-++ ...+++.+..+|.+.|++++|...|++..+ .+ ..+|+.+...
T Consensus 47 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~ 126 (292)
T 1qqe_A 47 YRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEI 126 (292)
T ss_dssp HHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34455555555555544432 2111 145667777888888888888777766543 11 3578888888
Q ss_pred HHhc-CChHHHHHHHHHHHHCCCCCC-------HHHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCCc-----chH
Q 040319 514 HLLH-RQGDEALAVWSSMEKASIKPD-------AITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTS-----EHY 580 (812)
Q Consensus 514 ~~~~-g~~~~A~~l~~~m~~~g~~pd-------~~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~-----~~y 580 (812)
|... |++++|+..|++.++ +.|+ ..++..+...+.. .|++++|..+|+...+...-.+.. ..|
T Consensus 127 ~~~~lg~~~~A~~~~~~Al~--~~~~~~~~~~~~~~~~~lg~~~~~--~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 202 (292)
T 1qqe_A 127 LENDLHDYAKAIDCYELAGE--WYAQDQSVALSNKCFIKCADLKAL--DGQYIEASDIYSKLIKSSMGNRLSQWSLKDYF 202 (292)
T ss_dssp HHHTTCCHHHHHHHHHHHHH--HHHHTTCHHHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHH
T ss_pred HHHhhcCHHHHHHHHHHHHH--HHHhCCChHHHHHHHHHHHHHHHH--hCCHHHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 8886 999999999998887 4332 2456777778888 899999999999887622111111 156
Q ss_pred HHHHHHHhhcCChHHHHHHHHhCC-CCCCHH------HHHHHHHHHH--hcCCHHHHHHHHHHHHccCCCCCc
Q 040319 581 ASLVSVLGYWGFLEEAEETINNMP-FQPKVS------VWRALLDSCR--IRLNTTIGKRVAKHILAMEPQDPA 644 (812)
Q Consensus 581 ~~li~~l~~~g~~~~A~~~~~~m~-~~p~~~------~~~~ll~~~~--~~~~~~~a~~~~~~~~~~~p~~~~ 644 (812)
..++.++...|++++|...+++.. +.|+.. .+..++.++. ..++++.|...++++.+++|.+..
T Consensus 203 ~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~ 275 (292)
T 1qqe_A 203 LKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKIT 275 (292)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHH
Confidence 778888999999999999998854 455421 3444556664 346788888888888888886433
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=98.71 E-value=1.2e-07 Score=95.89 Aligned_cols=165 Identities=11% Similarity=-0.016 Sum_probs=99.0
Q ss_pred hhHHHHHHHHhhhcCCHHHHHHHHccCCC-----------CChhHHHHHHHHHHhcCChHHHHHHHHHHHHC------CC
Q 040319 473 LGVANSMVSMYFKCCNMSNAIKAFNKMPS-----------HDIVSWNGLIAGHLLHRQGDEALAVWSSMEKA------SI 535 (812)
Q Consensus 473 ~~~~~~Li~~y~k~g~~~~A~~~f~~~~~-----------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------g~ 535 (812)
..++..+...|...|++++|...|++... ....+|..+...|...|++++|+..|+++.+. +-
T Consensus 85 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 164 (283)
T 3edt_B 85 AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPD 164 (283)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 44556666666677777777666665432 12356677777777788888888888777763 11
Q ss_pred CCCH-HHHHHHHHHhcCCCCchHHHHHHHHHHhhhhc------CccCC-cchHHHHHHHHhhcC------ChHHHHHHHH
Q 040319 536 KPDA-ITFVLIISAYRYTNLNLVDSCRKLFLSMKTIY------NIEPT-SEHYASLVSVLGYWG------FLEEAEETIN 601 (812)
Q Consensus 536 ~pd~-~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~------~~~p~-~~~y~~li~~l~~~g------~~~~A~~~~~ 601 (812)
.|+. .++..+...+.. .|++++|..+|+...+.. ...|. ...|..+.......+ .+.++...++
T Consensus 165 ~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (283)
T 3edt_B 165 DPNVAKTKNNLASCYLK--QGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYK 242 (283)
T ss_dssp CHHHHHHHHHHHHHHHH--HTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------
T ss_pred CHHHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHH
Confidence 3433 456666667777 788888888887766421 11222 333444444443333 3445555555
Q ss_pred hCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccC
Q 040319 602 NMP-FQP-KVSVWRALLDSCRIRLNTTIGKRVAKHILAME 639 (812)
Q Consensus 602 ~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 639 (812)
... ..| ...++..+...+...|+.++|...+++++++.
T Consensus 243 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 282 (283)
T 3edt_B 243 ACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRNR 282 (283)
T ss_dssp CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred hcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 544 234 35578888888999999999999999998753
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.71 E-value=6.6e-08 Score=90.28 Aligned_cols=154 Identities=10% Similarity=-0.025 Sum_probs=97.3
Q ss_pred HHHHHHhhhcCCHHHHHHHHccCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCC
Q 040319 477 NSMVSMYFKCCNMSNAIKAFNKMPS---HDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDAITFVLIISAYRYTN 553 (812)
Q Consensus 477 ~~Li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~ 553 (812)
..+...+.+.|++++|...|++..+ .+...|..+...|...|++++|+..|++..+ ..|+. .+..+...+
T Consensus 10 ~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~--~~p~~-~~~~~~~~~---- 82 (176)
T 2r5s_A 10 LKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPL--EYQDN-SYKSLIAKL---- 82 (176)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCG--GGCCH-HHHHHHHHH----
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhh--ccCCh-HHHHHHHHH----
Confidence 3444555566666666666665554 3345555555666666666666666655544 33322 111111100
Q ss_pred CchHHHHHHHHHHhhhhcCccCCcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHH
Q 040319 554 LNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLEEAEETINNMP-FQP-KVSVWRALLDSCRIRLNTTIGKRV 631 (812)
Q Consensus 554 ~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~ 631 (812)
. +.+.+...+|++.+++.. ..| +...|..+...+...|+.++|...
T Consensus 83 -------------------------------~-~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~ 130 (176)
T 2r5s_A 83 -------------------------------E-LHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALEL 130 (176)
T ss_dssp -------------------------------H-HHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred -------------------------------H-HHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHH
Confidence 0 111112223455555432 355 577888888899999999999999
Q ss_pred HHHHHccCCCC--CchHHHHHhhhhhCCCcchHHHHHHHH
Q 040319 632 AKHILAMEPQD--PATYILVSNLYSSSGRWHNSELVREDM 669 (812)
Q Consensus 632 ~~~~~~~~p~~--~~~~~~l~~~y~~~g~~~~a~~~~~~m 669 (812)
++++++.+|+. +..+..++.+|...|+.++|...+++.
T Consensus 131 ~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~a 170 (176)
T 2r5s_A 131 LWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQ 170 (176)
T ss_dssp HHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred HHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHH
Confidence 99999999875 558999999999999999999888765
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.71 E-value=3.3e-08 Score=89.48 Aligned_cols=118 Identities=11% Similarity=-0.039 Sum_probs=100.8
Q ss_pred HhcCCCCchHHHHHHHHHHhhhhcCccCC-cchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCC
Q 040319 548 AYRYTNLNLVDSCRKLFLSMKTIYNIEPT-SEHYASLVSVLGYWGFLEEAEETINNMP-FQP-KVSVWRALLDSCRIRLN 624 (812)
Q Consensus 548 a~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~ 624 (812)
.+.. .|++++|+..++.... ..|+ ...+-.+..+|.+.|++++|++.+++.. +.| +..+|..+...+...|+
T Consensus 6 ~~~~--~~~~e~ai~~~~~a~~---~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 6 MRRS--KADVERYIASVQGSTP---SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp -CCC--HHHHHHHHHHHHHHSC---SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHH--cChHHHHHHHHHHhcc---cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCc
Confidence 4445 7899999999988764 3443 5567789999999999999999999865 566 68899999999999999
Q ss_pred HHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCCcchHHHH-HHHHH
Q 040319 625 TTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWHNSELV-REDMR 670 (812)
Q Consensus 625 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~-~~~m~ 670 (812)
.+.|+..++++++++|+++.++..++.+|.+.|++++|.+. +++..
T Consensus 81 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al 127 (150)
T 4ga2_A 81 TDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAA 127 (150)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988765 46553
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.71 E-value=1e-07 Score=95.58 Aligned_cols=203 Identities=7% Similarity=-0.021 Sum_probs=145.0
Q ss_pred hhhHHHHHHHhcCccchHHHHHHHHHHHHhCCCC--chhHHHHHHHHhhhcCCHHHHHHHHccCCC--CC----hhHHHH
Q 040319 438 EIALTSVLGVCGTLGFHEMGKQIHSYALKTGFSS--DLGVANSMVSMYFKCCNMSNAIKAFNKMPS--HD----IVSWNG 509 (812)
Q Consensus 438 ~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~--~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~--~~----~~~~~~ 509 (812)
...+-.....+...|+++.|...+..+++..... ....+..+..+|.+.|++++|...|++..+ |+ ...|..
T Consensus 15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 94 (261)
T 3qky_A 15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYE 94 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHH
Confidence 3455556677788999999999999998864221 166788899999999999999999998764 32 356777
Q ss_pred HHHHHHh--------cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCCcchHH
Q 040319 510 LIAGHLL--------HRQGDEALAVWSSMEKASIKPDAITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYA 581 (812)
Q Consensus 510 li~~~~~--------~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~ 581 (812)
+..+|.. .|++++|+..|++.++ ..|+..... .+...+...... -...+.
T Consensus 95 lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~--~~p~~~~~~---------------~a~~~~~~~~~~-----~~~~~~ 152 (261)
T 3qky_A 95 RAMCYYKLSPPYELDQTDTRKAIEAFQLFID--RYPNHELVD---------------DATQKIRELRAK-----LARKQY 152 (261)
T ss_dssp HHHHHHHHCCCTTSCCHHHHHHHHHHHHHHH--HCTTCTTHH---------------HHHHHHHHHHHH-----HHHHHH
T ss_pred HHHHHHHhcccccccchhHHHHHHHHHHHHH--HCcCchhHH---------------HHHHHHHHHHHH-----HHHHHH
Confidence 8888888 9999999999999998 567642111 111111111110 012256
Q ss_pred HHHHHHhhcCChHHHHHHHHhCC-CCCC----HHHHHHHHHHHHhc----------CCHHHHHHHHHHHHccCCCCCc--
Q 040319 582 SLVSVLGYWGFLEEAEETINNMP-FQPK----VSVWRALLDSCRIR----------LNTTIGKRVAKHILAMEPQDPA-- 644 (812)
Q Consensus 582 ~li~~l~~~g~~~~A~~~~~~m~-~~p~----~~~~~~ll~~~~~~----------~~~~~a~~~~~~~~~~~p~~~~-- 644 (812)
.+..+|.+.|++++|+..+++.. ..|+ ...+..+..++... |+.++|...++++++..|+++.
T Consensus 153 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 232 (261)
T 3qky_A 153 EAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLR 232 (261)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHH
Confidence 67888899999999999988754 3343 34666676777655 8899999999999999999853
Q ss_pred -hHHHHHhhhhhCCCcchH
Q 040319 645 -TYILVSNLYSSSGRWHNS 662 (812)
Q Consensus 645 -~~~~l~~~y~~~g~~~~a 662 (812)
+...+..++...|+++++
T Consensus 233 ~a~~~l~~~~~~~~~~~~~ 251 (261)
T 3qky_A 233 TAEELYTRARQRLTELEGD 251 (261)
T ss_dssp HHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHhhhh
Confidence 455566666666555543
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.70 E-value=1.8e-07 Score=82.27 Aligned_cols=128 Identities=14% Similarity=0.204 Sum_probs=74.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCCcchHHHHH
Q 040319 506 SWNGLIAGHLLHRQGDEALAVWSSMEKASIKPD-AITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYASLV 584 (812)
Q Consensus 506 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li 584 (812)
.|..+...|...|++++|+.+|+++.+. .|+ ...+..+...+.. .|++++|..+|+.+.+. .
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~--~~~~~~A~~~~~~~~~~---~---------- 65 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYK--QGDYDEAIEYYQKALEL---D---------- 65 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHH--HTCHHHHHHHHHHHHHH---C----------
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHc--CCcchhHHHHHHHHHHH--hcCHHHHHHHHHHHHHH---C----------
Confidence 4566667777777777777777777663 332 3444444445555 55666666666555431 1
Q ss_pred HHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCCcchHHH
Q 040319 585 SVLGYWGFLEEAEETINNMPFQPKVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWHNSEL 664 (812)
Q Consensus 585 ~~l~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~ 664 (812)
+.+...|..+...+...|+.+.|...++++++..|+++..+..++.+|...|++++|.+
T Consensus 66 ---------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 124 (136)
T 2fo7_A 66 ---------------------PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIE 124 (136)
T ss_dssp ---------------------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHH
T ss_pred ---------------------CCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHH
Confidence 12334455555555555666666666666666666666666666666666666666666
Q ss_pred HHHHHHh
Q 040319 665 VREDMRE 671 (812)
Q Consensus 665 ~~~~m~~ 671 (812)
.++++.+
T Consensus 125 ~~~~~~~ 131 (136)
T 2fo7_A 125 YYQKALE 131 (136)
T ss_dssp HHHHHHH
T ss_pred HHHHHHc
Confidence 6665543
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.69 E-value=1.1e-07 Score=83.59 Aligned_cols=95 Identities=14% Similarity=0.152 Sum_probs=83.8
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHhCC-C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhC
Q 040319 579 HYASLVSVLGYWGFLEEAEETINNMP-F-QPKVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSS 656 (812)
Q Consensus 579 ~y~~li~~l~~~g~~~~A~~~~~~m~-~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~ 656 (812)
.|..++..+.+.|++++|.++++++. . +.+..+|..+...+...|+.+.|...++++++..|+++..+..++.+|...
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 82 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQ 82 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHh
Confidence 56778888889999999999988864 3 346778888888899999999999999999999999999999999999999
Q ss_pred CCcchHHHHHHHHHhCC
Q 040319 657 GRWHNSELVREDMREKG 673 (812)
Q Consensus 657 g~~~~a~~~~~~m~~~g 673 (812)
|++++|.+.++++.+..
T Consensus 83 ~~~~~A~~~~~~~~~~~ 99 (136)
T 2fo7_A 83 GDYDEAIEYYQKALELD 99 (136)
T ss_dssp TCHHHHHHHHHHHHHHC
T ss_pred cCHHHHHHHHHHHHHhC
Confidence 99999999999987654
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.68 E-value=4.7e-08 Score=88.10 Aligned_cols=101 Identities=13% Similarity=-0.010 Sum_probs=89.9
Q ss_pred CccCC-cchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHH
Q 040319 572 NIEPT-SEHYASLVSVLGYWGFLEEAEETINNMP-FQP-KVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYIL 648 (812)
Q Consensus 572 ~~~p~-~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 648 (812)
.+.|+ ...+..+...+.+.|++++|++.|++.. ..| +...|..+..++...|++++|...++++++++|+++.+|..
T Consensus 30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~ 109 (151)
T 3gyz_A 30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFH 109 (151)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHH
Confidence 34554 5677888889999999999999999865 556 68899999999999999999999999999999999999999
Q ss_pred HHhhhhhCCCcchHHHHHHHHHhC
Q 040319 649 VSNLYSSSGRWHNSELVREDMREK 672 (812)
Q Consensus 649 l~~~y~~~g~~~~a~~~~~~m~~~ 672 (812)
++.+|...|++++|.+.+++..+.
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999999999999999988653
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.64 E-value=1.5e-07 Score=90.60 Aligned_cols=124 Identities=9% Similarity=-0.009 Sum_probs=94.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCC-cchHHHHHHHH
Q 040319 510 LIAGHLLHRQGDEALAVWSSMEKASIKPDA-ITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPT-SEHYASLVSVL 587 (812)
Q Consensus 510 li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l 587 (812)
+...|...|++++|+..|++.++ +.|+. ..+..+..++.. .|++++|...|+...+ +.|+ ...|..+..+|
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~--~g~~~~A~~~~~~al~---~~P~~~~a~~~lg~~~ 132 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQ--KAPNNVDCLEACAEMQVC--RGQEKDALRMYEKILQ---LEADNLAANIFLGNYY 132 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHH--HTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHH
Confidence 88888999999999999999998 67765 566777777878 8999999999998876 4565 67888888888
Q ss_pred hhcCC--hHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCC
Q 040319 588 GYWGF--LEEAEETINNMPFQPK--VSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQ 641 (812)
Q Consensus 588 ~~~g~--~~~A~~~~~~m~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~ 641 (812)
...|. .+++...++... .|+ ...|..+..++...|+.++|+..+++++++.|+
T Consensus 133 ~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~ 189 (208)
T 3urz_A 133 YLTAEQEKKKLETDYKKLS-SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPS 189 (208)
T ss_dssp HHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCC
T ss_pred HHHhHHHHHHHHHHHHHHh-CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 76654 445566666654 343 334455555667789999999999999999997
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.63 E-value=2.7e-07 Score=106.11 Aligned_cols=191 Identities=12% Similarity=0.056 Sum_probs=150.1
Q ss_pred cCccchHHHHHHHHHHH--------HhCCCCchhHHHHHHHHhhhcCCHHHHHHHHccCCC---CChhHHHHHHHHHHhc
Q 040319 449 GTLGFHEMGKQIHSYAL--------KTGFSSDLGVANSMVSMYFKCCNMSNAIKAFNKMPS---HDIVSWNGLIAGHLLH 517 (812)
Q Consensus 449 ~~~~~~~~a~~~~~~~~--------~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~ 517 (812)
...|++++|...+..+. +. .+.+...+..+...|.+.|++++|...|++..+ .+...|..+...|...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 66788888888888877 32 244667888889999999999999999998765 5678899999999999
Q ss_pred CChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCC-cchHHHHHHHHhhcCChHH
Q 040319 518 RQGDEALAVWSSMEKASIKPDA-ITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPT-SEHYASLVSVLGYWGFLEE 595 (812)
Q Consensus 518 g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g~~~~ 595 (812)
|++++|++.|++.++ +.|+. ..+..+..++.. .|++++ .+.|++..+ +.|+ ...|..+..+|.+.|++++
T Consensus 481 g~~~~A~~~~~~al~--l~P~~~~~~~~lg~~~~~--~g~~~~-~~~~~~al~---~~P~~~~a~~~lg~~~~~~g~~~~ 552 (681)
T 2pzi_A 481 GDYDSATKHFTEVLD--TFPGELAPKLALAATAEL--AGNTDE-HKFYQTVWS---TNDGVISAAFGLARARSAEGDRVG 552 (681)
T ss_dssp TCHHHHHHHHHHHHH--HSTTCSHHHHHHHHHHHH--HTCCCT-TCHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred CCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHH--cCChHH-HHHHHHHHH---hCCchHHHHHHHHHHHHHcCCHHH
Confidence 999999999999999 77866 667777778888 999999 999998876 3564 6789999999999999999
Q ss_pred HHHHHHhCC-CCCC-HHHHHHHHHHHHhcCC-----HHHHHHHHHHHHccCCCCCchHHH
Q 040319 596 AEETINNMP-FQPK-VSVWRALLDSCRIRLN-----TTIGKRVAKHILAMEPQDPATYIL 648 (812)
Q Consensus 596 A~~~~~~m~-~~p~-~~~~~~ll~~~~~~~~-----~~~a~~~~~~~~~~~p~~~~~~~~ 648 (812)
|++.+++.. ..|+ ...|..+..++...++ .+...++.+.+.++.++++.....
T Consensus 553 A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~~~~l 612 (681)
T 2pzi_A 553 AVRTLDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPRVLQI 612 (681)
T ss_dssp HHHHHHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTTHHHH
T ss_pred HHHHHHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHHHHHH
Confidence 999999976 7786 5677777777655554 455555666666666665555443
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.62 E-value=9.2e-07 Score=88.50 Aligned_cols=183 Identities=9% Similarity=0.013 Sum_probs=127.6
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHhhhcCCHHHHHHHHccCCCC-----ChhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 040319 457 GKQIHSYALKTGFSSDLGVANSMVSMYFKCCNMSNAIKAFNKMPSH-----DIVSWNGLIAGHLLHRQGDEALAVWSSME 531 (812)
Q Consensus 457 a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 531 (812)
+...++.....+ .++......+..+|...|++++|++++.+...+ +...+-.++..|.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 344444444433 344445567888888899999999998876332 44566777888999999999999999998
Q ss_pred HCCCCC-----CHHHHHHHHHHhc--CCCCchHHHHHHHHHHhhhhcCccCCcchHHHHHHHHhhcCChHHHHHHHHhCC
Q 040319 532 KASIKP-----DAITFVLIISAYR--YTNLNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLEEAEETINNMP 604 (812)
Q Consensus 532 ~~g~~p-----d~~t~~~ll~a~~--~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~ 604 (812)
+ ..| +..+...+..++. ..+.+.+++|..+|+++...+ |+...-..+..++.+.|++++|.+.++.+.
T Consensus 164 ~--~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~---p~~~~~~lLln~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 164 N--AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTF---PTWKTQLGLLNLHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp H--HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS---CSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred h--cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC---CCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 8 678 3555566655522 201348999999999987632 442233334447889999999999987643
Q ss_pred C-----------CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHH
Q 040319 605 F-----------QP-KVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYI 647 (812)
Q Consensus 605 ~-----------~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 647 (812)
- .| |+.+...++......|+ .|.+..+++.+..|+++....
T Consensus 239 ~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~d 291 (310)
T 3mv2_B 239 SDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIKH 291 (310)
T ss_dssp SHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHHH
T ss_pred HhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHHH
Confidence 1 25 45566566666666776 889999999999999876543
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.61 E-value=2.8e-07 Score=103.97 Aligned_cols=158 Identities=12% Similarity=0.037 Sum_probs=121.6
Q ss_pred cCCHHHHHHHHccCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcCCCCchHHHHH
Q 040319 486 CCNMSNAIKAFNKMPS---HDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDA-ITFVLIISAYRYTNLNLVDSCR 561 (812)
Q Consensus 486 ~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~~~g~~~~a~ 561 (812)
.|++++|...|++..+ .+...|..+...|...|++++|++.|++..+ ..|+. ..+..+..++.. .|++++|.
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~--~g~~~~A~ 77 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLA--LHPGHPEAVARLGRVRWT--QQRHAEAA 77 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TSTTCHHHHHHHHHHHHH--TTCHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHH--CCCHHHHH
Confidence 4678888888887765 4567888899999999999999999999998 66765 667777778888 89999999
Q ss_pred HHHHHhhhhcCccCC-cchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhc---CCHHHHHHHHHHH
Q 040319 562 KLFLSMKTIYNIEPT-SEHYASLVSVLGYWGFLEEAEETINNMP-FQP-KVSVWRALLDSCRIR---LNTTIGKRVAKHI 635 (812)
Q Consensus 562 ~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~---~~~~~a~~~~~~~ 635 (812)
+.|++..+ +.|+ ...|..+..+|.+.|++++|.+.+++.. ..| +...+..+...+... |+.++|...++++
T Consensus 78 ~~~~~al~---~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 78 VLLQQASD---AAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHHHHHh---cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 99998876 3454 6788999999999999999999998864 455 577888899999999 9999999999999
Q ss_pred HccCCCCCchHHHHH
Q 040319 636 LAMEPQDPATYILVS 650 (812)
Q Consensus 636 ~~~~p~~~~~~~~l~ 650 (812)
++.+|++...+..++
T Consensus 155 l~~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 155 VAQGVGAVEPFAFLS 169 (568)
T ss_dssp HHHTCCCSCHHHHTT
T ss_pred HhcCCcccChHHHhC
Confidence 999999888887776
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.61 E-value=1e-07 Score=86.00 Aligned_cols=95 Identities=13% Similarity=0.005 Sum_probs=85.8
Q ss_pred cchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhh
Q 040319 577 SEHYASLVSVLGYWGFLEEAEETINNMP-FQP-KVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYS 654 (812)
Q Consensus 577 ~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~ 654 (812)
...+..+...+.+.|++++|+..+++.. ..| +...|..+..++...|+.+.|...++++++++|+++..+..++.+|.
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~ 100 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLL 100 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 5667778889999999999999998864 455 78899999999999999999999999999999999999999999999
Q ss_pred hCCCcchHHHHHHHHHh
Q 040319 655 SSGRWHNSELVREDMRE 671 (812)
Q Consensus 655 ~~g~~~~a~~~~~~m~~ 671 (812)
..|++++|.+.+++..+
T Consensus 101 ~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 101 QXGELAEAESGLFLAQE 117 (148)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 99999999999988754
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.59 E-value=1.3e-06 Score=84.14 Aligned_cols=163 Identities=10% Similarity=-0.098 Sum_probs=124.3
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCc---hHHHHHHHHHHhhhhcCccCCcc
Q 040319 502 HDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDAITFVLIISAYRYTNLN---LVDSCRKLFLSMKTIYNIEPTSE 578 (812)
Q Consensus 502 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~g---~~~~a~~~~~~m~~~~~~~p~~~ 578 (812)
-++.++..|...|...+++++|++.|++..+.| +...+..+-..|.. .| +.++|.++|+...+ . -+..
T Consensus 16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~--~g~~~~~~~A~~~~~~A~~-~---g~~~ 86 (212)
T 3rjv_A 16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR--NPQQADYPQARQLAEKAVE-A---GSKS 86 (212)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS--STTSCCHHHHHHHHHHHHH-T---TCHH
T ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc--CCCCCCHHHHHHHHHHHHH-C---CCHH
Confidence 456677777777777888888888888887765 44455555555544 22 78888888888765 2 3566
Q ss_pred hHHHHHHHHhh----cCChHHHHHHHHhCC-CCCC---HHHHHHHHHHHHh----cCCHHHHHHHHHHHHccCCCCCchH
Q 040319 579 HYASLVSVLGY----WGFLEEAEETINNMP-FQPK---VSVWRALLDSCRI----RLNTTIGKRVAKHILAMEPQDPATY 646 (812)
Q Consensus 579 ~y~~li~~l~~----~g~~~~A~~~~~~m~-~~p~---~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~ 646 (812)
.+..|..+|.. .+++++|++++++.. ..|. +..+..|...+.. .+|.++|...++++.++ |.++.++
T Consensus 87 a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~ 165 (212)
T 3rjv_A 87 GEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAE 165 (212)
T ss_dssp HHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHH
T ss_pred HHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHH
Confidence 77778888876 788999999998865 4443 6788888888887 78999999999999998 6678899
Q ss_pred HHHHhhhhhC-C-----CcchHHHHHHHHHhCCC
Q 040319 647 ILVSNLYSSS-G-----RWHNSELVREDMREKGF 674 (812)
Q Consensus 647 ~~l~~~y~~~-g-----~~~~a~~~~~~m~~~g~ 674 (812)
..|+.+|... | ++++|.+.+++..+.|.
T Consensus 166 ~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 166 YWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 9999999765 3 89999999998866553
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.59 E-value=2e-07 Score=105.16 Aligned_cols=150 Identities=11% Similarity=0.030 Sum_probs=115.2
Q ss_pred cCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCC-cchHHHHHHHHhhcCChH
Q 040319 517 HRQGDEALAVWSSMEKASIKPDA-ITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPT-SEHYASLVSVLGYWGFLE 594 (812)
Q Consensus 517 ~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g~~~ 594 (812)
.|++++|++.|++..+ ..|+. ..+..+...+.. .|++++|.+.|++..+ +.|+ ...|..+..+|.+.|+++
T Consensus 2 ~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~--~g~~~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~g~~~ 74 (568)
T 2vsy_A 2 TADGPRELLQLRAAVR--HRPQDFVAWLMLADAELG--MGDTTAGEMAVQRGLA---LHPGHPEAVARLGRVRWTQQRHA 74 (568)
T ss_dssp ---------------------CCHHHHHHHHHHHHH--HTCHHHHHHHHHHHHT---TSTTCHHHHHHHHHHHHHTTCHH
T ss_pred CccHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHH
Confidence 4789999999999988 67764 667777778888 9999999999999886 3454 778999999999999999
Q ss_pred HHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhC---CCcchHHHHHHHH
Q 040319 595 EAEETINNMP-FQP-KVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSS---GRWHNSELVREDM 669 (812)
Q Consensus 595 ~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~---g~~~~a~~~~~~m 669 (812)
+|.+.+++.. ..| +...|..+...+...|+.++|...++++++++|+++..+..++.+|... |++++|.+.+++.
T Consensus 75 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 75 EAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 9999999864 455 5789999999999999999999999999999999999999999999999 9999999988877
Q ss_pred HhCC
Q 040319 670 REKG 673 (812)
Q Consensus 670 ~~~g 673 (812)
.+.+
T Consensus 155 l~~~ 158 (568)
T 2vsy_A 155 VAQG 158 (568)
T ss_dssp HHHT
T ss_pred HhcC
Confidence 5543
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.54 E-value=2.2e-07 Score=81.07 Aligned_cols=99 Identities=11% Similarity=0.073 Sum_probs=71.0
Q ss_pred ccCC-cchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHH
Q 040319 573 IEPT-SEHYASLVSVLGYWGFLEEAEETINNMP-FQP-KVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILV 649 (812)
Q Consensus 573 ~~p~-~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 649 (812)
+.|+ ...+......|.+.|++++|++.|++.. ..| +..+|..+..++...|+.+.|+..++++++++|+++.+|..+
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l 87 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRK 87 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 3344 3456666777777777777777777643 444 566777777777777788888877888877787777777778
Q ss_pred HhhhhhCCCcchHHHHHHHHHh
Q 040319 650 SNLYSSSGRWHNSELVREDMRE 671 (812)
Q Consensus 650 ~~~y~~~g~~~~a~~~~~~m~~ 671 (812)
+.+|...|++++|.+.+++..+
T Consensus 88 g~~~~~~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 88 AACLVAMREWSKAQRAYEDALQ 109 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 8888888888888777777643
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.54 E-value=3.6e-07 Score=79.62 Aligned_cols=107 Identities=9% Similarity=-0.001 Sum_probs=76.0
Q ss_pred HHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccC-CcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHH
Q 040319 542 FVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEP-TSEHYASLVSVLGYWGFLEEAEETINNMP-FQP-KVSVWRALLDS 618 (812)
Q Consensus 542 ~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~ 618 (812)
+......+.. .|++++|++.|++..+ +.| +...|..+..+|.+.|++++|++.+++.. +.| +...|..+..+
T Consensus 16 ~~~~G~~~~~--~g~~~~A~~~~~~al~---~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~ 90 (126)
T 4gco_A 16 EKNKGNEYFK--KGDYPTAMRHYNEAVK---RDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAAC 90 (126)
T ss_dssp HHHHHHHHHH--TTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHH--cCCHHHHHHHHHHHHH---hCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 4444444545 5666666666655544 233 25566666666666777777776666643 445 57788889999
Q ss_pred HHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhh
Q 040319 619 CRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLY 653 (812)
Q Consensus 619 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y 653 (812)
+...|++++|...++++++++|+++.++..|.+++
T Consensus 91 ~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 91 LVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred HHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 99999999999999999999999999988887764
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.52 E-value=4.9e-07 Score=86.94 Aligned_cols=157 Identities=8% Similarity=0.008 Sum_probs=115.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH-HHHH----------------HHHHhcCCCCchHHHHHHHHHHhhh
Q 040319 507 WNGLIAGHLLHRQGDEALAVWSSMEKASIKPDAI-TFVL----------------IISAYRYTNLNLVDSCRKLFLSMKT 569 (812)
Q Consensus 507 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~-t~~~----------------ll~a~~~~~~g~~~~a~~~~~~m~~ 569 (812)
+-.....+...|++++|+..|++.++ ..|+.. .+.. +..++.. .|++++|...|+...+
T Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~--~g~~~~A~~~~~~al~ 82 (208)
T 3urz_A 7 MLQKVSAAIEAGQNGQAVSYFRQTIA--LNIDRTEMYYWTNVDKNSEISSKLATELALAYKK--NRNYDKAYLFYKELLQ 82 (208)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH--HCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHH--CCCHHHHHHHHHHHHH
Confidence 33445567788889999999998888 677653 3444 6667777 8999999999998886
Q ss_pred hcCccCC-cchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCC--HHHHHHHHHHHHccCCCCCc
Q 040319 570 IYNIEPT-SEHYASLVSVLGYWGFLEEAEETINNMP-FQP-KVSVWRALLDSCRIRLN--TTIGKRVAKHILAMEPQDPA 644 (812)
Q Consensus 570 ~~~~~p~-~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~--~~~a~~~~~~~~~~~p~~~~ 644 (812)
+.|+ ...|..+..+|...|++++|++.+++.. ..| +..+|..+...+...|+ .+.+...++++....|. ..
T Consensus 83 ---~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 158 (208)
T 3urz_A 83 ---KAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKM-QY 158 (208)
T ss_dssp ---HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHH-HH
T ss_pred ---HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCch-hH
Confidence 3464 7889999999999999999999999865 566 57788888888765543 34455566666544332 22
Q ss_pred hHHHHHhhhhhCCCcchHHHHHHHHHh
Q 040319 645 TYILVSNLYSSSGRWHNSELVREDMRE 671 (812)
Q Consensus 645 ~~~~l~~~y~~~g~~~~a~~~~~~m~~ 671 (812)
.+..++..+...|++++|...+++..+
T Consensus 159 a~~~~g~~~~~~~~~~~A~~~~~~al~ 185 (208)
T 3urz_A 159 ARYRDGLSKLFTTRYEKARNSLQKVIL 185 (208)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 456678888889999999999998743
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.49 E-value=3e-07 Score=94.61 Aligned_cols=59 Identities=3% Similarity=-0.142 Sum_probs=28.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCc------hHHHHHhhhhhCCCcchHHHHHHHH
Q 040319 611 VWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPA------TYILVSNLYSSSGRWHNSELVREDM 669 (812)
Q Consensus 611 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~------~~~~l~~~y~~~g~~~~a~~~~~~m 669 (812)
++..+...+...|+++.|...+++++++.|++.. .+..++.+|...|++++|.+.+++.
T Consensus 157 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~a 221 (307)
T 2ifu_A 157 LIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRES 221 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4444444455555555555555555554433221 3344444455555555555555444
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.49 E-value=1.5e-06 Score=84.67 Aligned_cols=184 Identities=11% Similarity=-0.006 Sum_probs=132.4
Q ss_pred hHHHHHHHhcCccchHHHHHHHHHHHHhCCCC--chhHHHHHHHHhhhcCCHHHHHHHHccCCC--CCh----hHHHHHH
Q 040319 440 ALTSVLGVCGTLGFHEMGKQIHSYALKTGFSS--DLGVANSMVSMYFKCCNMSNAIKAFNKMPS--HDI----VSWNGLI 511 (812)
Q Consensus 440 t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~--~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~--~~~----~~~~~li 511 (812)
.+-.....+...|+++.|...+..+++..... ....+..+..+|.+.|++++|...|+++.+ |+. ..|..+.
T Consensus 6 ~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g 85 (225)
T 2yhc_A 6 EIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRG 85 (225)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHH
Confidence 34445567788899999999999999864322 245777889999999999999999998764 432 2455555
Q ss_pred HHHHh------------------cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCc
Q 040319 512 AGHLL------------------HRQGDEALAVWSSMEKASIKPDAITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNI 573 (812)
Q Consensus 512 ~~~~~------------------~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~ 573 (812)
..|.. .|+.++|+..|+++++ ..|+......... . .+.+. ..+.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~--~~P~~~~a~~a~~---~--l~~~~------~~~~----- 147 (225)
T 2yhc_A 86 LTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVR--GYPNSQYTTDATK---R--LVFLK------DRLA----- 147 (225)
T ss_dssp HHHHHHHC--------------CCHHHHHHHHHHHHHHT--TCTTCTTHHHHHH---H--HHHHH------HHHH-----
T ss_pred HHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHH--HCcCChhHHHHHH---H--HHHHH------HHHH-----
Confidence 55554 5789999999999999 7788643221111 1 11111 1111
Q ss_pred cCCcchHHHHHHHHhhcCChHHHHHHHHhCC-CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCch
Q 040319 574 EPTSEHYASLVSVLGYWGFLEEAEETINNMP-FQPK----VSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPAT 645 (812)
Q Consensus 574 ~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 645 (812)
...-.+...|.+.|++++|+..++++. ..|+ ...+..+..++...|+.+.|...++++....|++...
T Consensus 148 ----~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~~ 220 (225)
T 2yhc_A 148 ----KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLEH 220 (225)
T ss_dssp ----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCCC
T ss_pred ----HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchhh
Confidence 122356788999999999999998865 3444 2467888889999999999999999999999986654
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.47 E-value=8.8e-07 Score=79.09 Aligned_cols=95 Identities=11% Similarity=-0.062 Sum_probs=84.5
Q ss_pred cchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhh
Q 040319 577 SEHYASLVSVLGYWGFLEEAEETINNMP-FQP-KVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYS 654 (812)
Q Consensus 577 ~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~ 654 (812)
...+..+...+.+.|++++|+..+++.. ..| +...|..+..++...|+++.|...++++++++|+++..+..++.+|.
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 4556677788889999999999998864 455 67889999999999999999999999999999999999999999999
Q ss_pred hCCCcchHHHHHHHHHh
Q 040319 655 SSGRWHNSELVREDMRE 671 (812)
Q Consensus 655 ~~g~~~~a~~~~~~m~~ 671 (812)
..|++++|.+.+++..+
T Consensus 98 ~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARA 114 (142)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 99999999999998754
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.46 E-value=7.5e-06 Score=83.36 Aligned_cols=160 Identities=6% Similarity=-0.083 Sum_probs=118.6
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCC-CCCCHH----HHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCC----cch
Q 040319 509 GLIAGHLLHRQGDEALAVWSSMEKAS-IKPDAI----TFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPT----SEH 579 (812)
Q Consensus 509 ~li~~~~~~g~~~~A~~l~~~m~~~g-~~pd~~----t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~ 579 (812)
..+..+...|++++|..++++..+.. ..|+.. .+..+...+.. .|++++|...|+...+...-.++ ...
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLK--KVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTT--SSCHHHHHHHHHHHHHTCCCCSCTTHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHc--ccCHHHHHHHHHHHHHHhcccccHHHHHHH
Confidence 34667788899999999999988732 122211 22235555656 78999999999988762211222 236
Q ss_pred HHHHHHHHhhcCChHHHHHHHHhCC-----C---CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCC------Cc
Q 040319 580 YASLVSVLGYWGFLEEAEETINNMP-----F---QPK-VSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQD------PA 644 (812)
Q Consensus 580 y~~li~~l~~~g~~~~A~~~~~~m~-----~---~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~------~~ 644 (812)
|+.+..+|...|++++|++.++++. . .|. ..++..+...|...|++++|...+++++++.++. +.
T Consensus 158 ~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~ 237 (293)
T 3u3w_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ 237 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHH
Confidence 8899999999999999998887754 1 122 3478888889999999999999999999876443 56
Q ss_pred hHHHHHhhhhhCCC-cchHHHHHHHHH
Q 040319 645 TYILVSNLYSSSGR-WHNSELVREDMR 670 (812)
Q Consensus 645 ~~~~l~~~y~~~g~-~~~a~~~~~~m~ 670 (812)
.|..++.+|.+.|+ +++|.+.+++..
T Consensus 238 ~~~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 238 LYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 78999999999995 599999887763
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.45 E-value=3.4e-07 Score=85.39 Aligned_cols=154 Identities=10% Similarity=0.017 Sum_probs=109.2
Q ss_pred HHHHHHHhcCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHhhhcCCHHHHHHHHccCCC--CChhHHHHHHHH-HHhc
Q 040319 441 LTSVLGVCGTLGFHEMGKQIHSYALKTGFSSDLGVANSMVSMYFKCCNMSNAIKAFNKMPS--HDIVSWNGLIAG-HLLH 517 (812)
Q Consensus 441 ~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~--~~~~~~~~li~~-~~~~ 517 (812)
+......+...|+++.|...+..+++.. +.+...+..+...|.+.|++++|...|++... |+...+..+... +...
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~ 87 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKLELHQQ 87 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHHHHHHhh
Confidence 4455567788899999999999877643 34677889999999999999999999999876 544333322211 2233
Q ss_pred CChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCC---cchHHHHHHHHhhcCCh
Q 040319 518 RQGDEALAVWSSMEKASIKPDA-ITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPT---SEHYASLVSVLGYWGFL 593 (812)
Q Consensus 518 g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~---~~~y~~li~~l~~~g~~ 593 (812)
+...+|+..|++.++ ..|+. ..+..+..++.. .|++++|...|+.+.+ ..|+ ...+..+..++...|+.
T Consensus 88 ~~~~~a~~~~~~al~--~~P~~~~~~~~la~~~~~--~g~~~~A~~~~~~~l~---~~p~~~~~~a~~~l~~~~~~~g~~ 160 (176)
T 2r5s_A 88 AAESPELKRLEQELA--ANPDNFELACELAVQYNQ--VGRDEEALELLWNILK---VNLGAQDGEVKKTFMDILSALGQG 160 (176)
T ss_dssp HTSCHHHHHHHHHHH--HSTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHT---TCTTTTTTHHHHHHHHHHHHHCSS
T ss_pred cccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHH--cccHHHHHHHHHHHHH---hCcccChHHHHHHHHHHHHHhCCC
Confidence 334457888888887 66764 556666667777 8888888888887765 3443 34677777777777777
Q ss_pred HHHHHHHHh
Q 040319 594 EEAEETINN 602 (812)
Q Consensus 594 ~~A~~~~~~ 602 (812)
++|...+++
T Consensus 161 ~~A~~~y~~ 169 (176)
T 2r5s_A 161 NAIASKYRR 169 (176)
T ss_dssp CHHHHHHHH
T ss_pred CcHHHHHHH
Confidence 777776654
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.45 E-value=1.3e-06 Score=84.02 Aligned_cols=114 Identities=10% Similarity=0.026 Sum_probs=79.8
Q ss_pred CchHHHHHHHHHHhhhhcCccCCcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHH
Q 040319 554 LNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLEEAEETINNMP-FQP-KVSVWRALLDSCRIRLNTTIGKRV 631 (812)
Q Consensus 554 ~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~ 631 (812)
.|++++|.+.|+... .|+...|..+..+|.+.|++++|++.+++.. ..| +...|..+...+...|+.+.|...
T Consensus 19 ~~~~~~A~~~~~~a~-----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~ 93 (213)
T 1hh8_A 19 KKDWKGALDAFSAVQ-----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKD 93 (213)
T ss_dssp TTCHHHHHHHHHTSS-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hCCHHHHHHHHHHHc-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccHHHHHHH
Confidence 566666666665442 3455566666666666666666666666543 233 566777777777788888888888
Q ss_pred HHHHHccCCCCC----------------chHHHHHhhhhhCCCcchHHHHHHHHHhC
Q 040319 632 AKHILAMEPQDP----------------ATYILVSNLYSSSGRWHNSELVREDMREK 672 (812)
Q Consensus 632 ~~~~~~~~p~~~----------------~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 672 (812)
+++++++.|++. ..+..++.+|...|++++|.+.+++..+.
T Consensus 94 ~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 94 LKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp HHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 888888777766 77888888888888888888888877543
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.44 E-value=1.5e-05 Score=80.56 Aligned_cols=227 Identities=7% Similarity=-0.069 Sum_probs=156.2
Q ss_pred CChhhHHHHHHHhcccCCCCCChhh-HHHHHHHhcCcc--chHHHHHHHHHHHHhCCCCchhHHHHHHHHh----hhc--
Q 040319 416 GKPEHAILLFHQSQSEATVVPDEIA-LTSVLGVCGTLG--FHEMGKQIHSYALKTGFSSDLGVANSMVSMY----FKC-- 486 (812)
Q Consensus 416 g~~~~A~~~~~~m~~~~g~~p~~~t-~~~ll~a~~~~~--~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y----~k~-- 486 (812)
...++|+.++.++.. +.|+..| |+.--..+...+ .++++..+.+.++....+ +..+|+.-...+ .+.
T Consensus 47 e~s~~aL~~t~~~L~---~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~ 122 (306)
T 3dra_A 47 EYSERALHITELGIN---ELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNN 122 (306)
T ss_dssp CCSHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTT
T ss_pred CCCHHHHHHHHHHHH---HCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhccc
Confidence 344678888888877 7777665 444444555566 788888888888775432 334444333333 334
Q ss_pred -CCHHHHHHHHccCCC---CChhHHHHHHHHHHhcCChH--HHHHHHHHHHHCCCCCCH-HHHHHHHHHhcCCCCch---
Q 040319 487 -CNMSNAIKAFNKMPS---HDIVSWNGLIAGHLLHRQGD--EALAVWSSMEKASIKPDA-ITFVLIISAYRYTNLNL--- 556 (812)
Q Consensus 487 -g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~--~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~~~g~--- 556 (812)
+++++++.+++.+.+ +|..+|+--...+.+.|.++ ++++.++++++ ..|.. ..+..-...... .|.
T Consensus 123 ~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~--~d~~N~sAW~~R~~ll~~--l~~~~~ 198 (306)
T 3dra_A 123 DFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVID--TDLKNNSAWSHRFFLLFS--KKHLAT 198 (306)
T ss_dssp CCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHS--SGGGCC
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHh--ccccch
Confidence 788888888887765 67788888887888888887 99999999998 55644 445444444444 454
Q ss_pred ---HHHHHHHHHHhhhhcCccC-CcchHHHHHHHHhhcCChHH-HHHHHHhCC-C----CCCHHHHHHHHHHHHhcCCHH
Q 040319 557 ---VDSCRKLFLSMKTIYNIEP-TSEHYASLVSVLGYWGFLEE-AEETINNMP-F----QPKVSVWRALLDSCRIRLNTT 626 (812)
Q Consensus 557 ---~~~a~~~~~~m~~~~~~~p-~~~~y~~li~~l~~~g~~~~-A~~~~~~m~-~----~p~~~~~~~ll~~~~~~~~~~ 626 (812)
+++++++++.+.. ..| +...|+.+..++.+.|+..+ +.++.++.. . ..++..+..+...+...|+.+
T Consensus 199 ~~~~~eEl~~~~~aI~---~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~ 275 (306)
T 3dra_A 199 DNTIDEELNYVKDKIV---KCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYN 275 (306)
T ss_dssp HHHHHHHHHHHHHHHH---HCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHH
T ss_pred hhhHHHHHHHHHHHHH---hCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHH
Confidence 8888888887775 234 46778888888888887444 555666654 2 236677888888888888888
Q ss_pred HHHHHHHHHHc-cCCCCCchHHHHHhhh
Q 040319 627 IGKRVAKHILA-MEPQDPATYILVSNLY 653 (812)
Q Consensus 627 ~a~~~~~~~~~-~~p~~~~~~~~l~~~y 653 (812)
+|.++++.+.+ .+|-...++...++.+
T Consensus 276 ~A~~~~~~l~~~~Dpir~~yW~~~~~~l 303 (306)
T 3dra_A 276 ESRTVYDLLKSKYNPIRSNFWDYQISKL 303 (306)
T ss_dssp HHHHHHHHHHHTTCGGGHHHHHHHHHTC
T ss_pred HHHHHHHHHHhccChHHHHHHHHHHhhc
Confidence 88888888886 7888777776665543
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.44 E-value=1.4e-07 Score=95.53 Aligned_cols=190 Identities=7% Similarity=-0.024 Sum_probs=126.8
Q ss_pred chhHHHHHHHHhhhcCCHHHHHHHHccCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHH
Q 040319 472 DLGVANSMVSMYFKCCNMSNAIKAFNKMPS---HDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDA-ITFVLIIS 547 (812)
Q Consensus 472 ~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~ 547 (812)
+...+..+...|.+.|++++|...|++... .+...|..+...|...|++++|+..+++.++ +.|+. ..+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALE--LDGQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 344566677778888888888888876543 3667788888888888888888888888877 56665 55666666
Q ss_pred HhcCCCCchHHHHHHHHHHhhhhcCccCC-cchHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 040319 548 AYRYTNLNLVDSCRKLFLSMKTIYNIEPT-SEHYASLVSVLGYWGFLEEAEETINNMPFQPKVSVWRALLDSCRIRLNTT 626 (812)
Q Consensus 548 a~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~ 626 (812)
++.. .|++++|...|+...+ +.|+ ...+...+....+..+..+... .......++..+...+ ..+ ..|+.+
T Consensus 81 ~~~~--~g~~~~A~~~~~~al~---l~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l-~~l-~~~~~~ 152 (281)
T 2c2l_A 81 CQLE--MESYDEAIANLQRAYS---LAKEQRLNFGDDIPSALRIAKKKRWNS-IEERRIHQESELHSYL-TRL-IAAERE 152 (281)
T ss_dssp HHHH--TTCHHHHHHHHHHHHH---HHHHTTCCCCSHHHHHHHHHHHHHHHH-HHHTCCCCCCHHHHHH-HHH-HHHHHH
T ss_pred HHHH--cCCHHHHHHHHHHHHH---hCccchhhHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHH-HHH-HHHHHH
Confidence 7777 8888888888887765 2232 1112222222222221111111 2222333444444333 333 268899
Q ss_pred HHHHHHHHHHccCCCCCchHHHHHhhhhhC-CCcchHHHHHHHHHh
Q 040319 627 IGKRVAKHILAMEPQDPATYILVSNLYSSS-GRWHNSELVREDMRE 671 (812)
Q Consensus 627 ~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~-g~~~~a~~~~~~m~~ 671 (812)
.|...++++++++|++......+..++.+. +++++|.+++.+..+
T Consensus 153 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 153 RELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 999999999999999888888888888887 789999999988755
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.44 E-value=4e-06 Score=85.45 Aligned_cols=163 Identities=6% Similarity=-0.109 Sum_probs=117.3
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-----HHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCC---
Q 040319 505 VSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDA-----ITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPT--- 576 (812)
Q Consensus 505 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-----~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~--- 576 (812)
..+...+..+...|++++|++.+++..+.....+. ..+..+...+.. .|++++|...|+...+...-..+
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~A~~~~~~al~~~~~~~~~~~ 153 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLK--KVDYEYCILELKKLLNQQLTGIDVYQ 153 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHT--SSCHHHHHHHHHHHHTTCCCSSCTTH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHHhcCCchHH
Confidence 34455667778888888888888888774221111 112333444556 78899999998887642211111
Q ss_pred -cchHHHHHHHHhhcCChHHHHHHHHhCC----CCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCC-----
Q 040319 577 -SEHYASLVSVLGYWGFLEEAEETINNMP----FQPK-----VSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQ----- 641 (812)
Q Consensus 577 -~~~y~~li~~l~~~g~~~~A~~~~~~m~----~~p~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~----- 641 (812)
...|+.+...|...|++++|++.+++.. ..|+ ..++..+...|...|++++|...+++++++.++
T Consensus 154 ~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~ 233 (293)
T 2qfc_A 154 NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMA 233 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCS
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHH
Confidence 3478889999999999999999887753 1222 257888888999999999999999999987532
Q ss_pred -CCchHHHHHhhhhhCCCcchH-HHHHHHH
Q 040319 642 -DPATYILVSNLYSSSGRWHNS-ELVREDM 669 (812)
Q Consensus 642 -~~~~~~~l~~~y~~~g~~~~a-~~~~~~m 669 (812)
-+..|..++.+|.+.|++++| ...+++.
T Consensus 234 ~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~A 263 (293)
T 2qfc_A 234 LIGQLYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp SHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 156788999999999999999 7766654
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.43 E-value=1.3e-06 Score=89.85 Aligned_cols=219 Identities=9% Similarity=-0.015 Sum_probs=143.7
Q ss_pred cCChhhHHHHHHHhcccCCCCCChhhHHHHHHHhcCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHhhhcCCHHHHHH
Q 040319 415 SGKPEHAILLFHQSQSEATVVPDEIALTSVLGVCGTLGFHEMGKQIHSYALKTGFSSDLGVANSMVSMYFKCCNMSNAIK 494 (812)
Q Consensus 415 ~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~ 494 (812)
.|++++|.+++++..+ ..+.. .+...++++.|...+..+ ...|...|++++|..
T Consensus 4 ~~~~~eA~~~~~~a~k---~~~~~--------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEK---YLKTS--------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp HHHHHHHHHHHHHHHH---HHCCC--------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred cchHHHHHHHHHHHHH---Hcccc--------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence 4566777777776654 11110 011135566666555443 456777888888887
Q ss_pred HHccCCC-----CC----hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCC---CCC--HHHHHHHHHHhcCCCCchHHHH
Q 040319 495 AFNKMPS-----HD----IVSWNGLIAGHLLHRQGDEALAVWSSMEKASI---KPD--AITFVLIISAYRYTNLNLVDSC 560 (812)
Q Consensus 495 ~f~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~---~pd--~~t~~~ll~a~~~~~~g~~~~a 560 (812)
.|.+..+ .+ ..+|+.+...|...|++++|+..|++.++.-. .|. ..++..+...+. .|++++|
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~---~g~~~~A 134 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLME---PLDLSKA 134 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHT---TTCHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH---cCCHHHH
Confidence 7765543 11 35788888899999999999999998776211 122 244555555553 3899999
Q ss_pred HHHHHHhhhhcCccC----CcchHHHHHHHHhhcCChHHHHHHHHhCC-C---CCC----HHHHHHHHHHHHhcCCHHHH
Q 040319 561 RKLFLSMKTIYNIEP----TSEHYASLVSVLGYWGFLEEAEETINNMP-F---QPK----VSVWRALLDSCRIRLNTTIG 628 (812)
Q Consensus 561 ~~~~~~m~~~~~~~p----~~~~y~~li~~l~~~g~~~~A~~~~~~m~-~---~p~----~~~~~~ll~~~~~~~~~~~a 628 (812)
+++|++..+...-.. ....+..+..+|.+.|++++|++.+++.. + .++ ...+..+...+...|+.+.|
T Consensus 135 ~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A 214 (307)
T 2ifu_A 135 VHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAA 214 (307)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHH
Confidence 999988765221111 14678889999999999999999998754 1 122 22566666667778999999
Q ss_pred HHHHHHHHccCCCCCch-----HHHHHhhhhhCCCcchHHH
Q 040319 629 KRVAKHILAMEPQDPAT-----YILVSNLYSSSGRWHNSEL 664 (812)
Q Consensus 629 ~~~~~~~~~~~p~~~~~-----~~~l~~~y~~~g~~~~a~~ 664 (812)
...+++++ ++|+.... ...++..| ..|+.+++.+
T Consensus 215 ~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 215 QKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 99999999 99975543 33445555 5666655554
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.39 E-value=9e-08 Score=99.75 Aligned_cols=161 Identities=9% Similarity=-0.011 Sum_probs=119.9
Q ss_pred hcCCHHHHHHHHccCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCchHHHHH
Q 040319 485 KCCNMSNAIKAFNKMPS---HDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDAITFVLIISAYRYTNLNLVDSCR 561 (812)
Q Consensus 485 k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~g~~~~a~ 561 (812)
..+++++|...|+...+ .+...|..+...|.+.|++++|+..|++.++ +.|+... . .. +++.
T Consensus 125 ~L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~--~~p~~~~---------~--~~--~~~~ 189 (336)
T 1p5q_A 125 HLKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVS--WLEYESS---------F--SN--EEAQ 189 (336)
T ss_dssp EEEEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HTTTCCC---------C--CS--HHHH
T ss_pred EEeecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--Hhhcccc---------C--Ch--HHHH
Confidence 34556666666655443 2456788888889999999999999999888 4554311 0 11 1111
Q ss_pred HHHHHhhhhcCccCCcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccC
Q 040319 562 KLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLEEAEETINNMP-FQP-KVSVWRALLDSCRIRLNTTIGKRVAKHILAME 639 (812)
Q Consensus 562 ~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 639 (812)
+.- . -....|..+..+|.+.|++++|++.+++.. +.| +...|..+..++...|+++.|...++++++++
T Consensus 190 ~~~-~--------~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~ 260 (336)
T 1p5q_A 190 KAQ-A--------LRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY 260 (336)
T ss_dssp HHH-H--------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHH-H--------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 100 0 113567788888888889998888888754 455 67889999999999999999999999999999
Q ss_pred CCCCchHHHHHhhhhhCCCcchH-HHHHHHH
Q 040319 640 PQDPATYILVSNLYSSSGRWHNS-ELVREDM 669 (812)
Q Consensus 640 p~~~~~~~~l~~~y~~~g~~~~a-~~~~~~m 669 (812)
|+++.++..++.+|...|++++| ...++.|
T Consensus 261 P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 291 (336)
T 1p5q_A 261 PNNKAAKTQLAVCQQRIRRQLAREKKLYANM 291 (336)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999 4455555
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.38 E-value=9e-05 Score=81.06 Aligned_cols=199 Identities=11% Similarity=0.071 Sum_probs=119.3
Q ss_pred CcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHhccchhhhhHHHHHhhHHHhcCCCchhHHHHHHH
Q 040319 298 NSVSYNALLAGYCKNGKAMEALGLFVKLLEEGLVLTEFTLTSVVNACGLIMEAKLSEQIHGFVMKFGLGSNDCIEAALLD 377 (812)
Q Consensus 298 d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~ 377 (812)
+...|-..+.-+.+.|+.++|..+|++.... |....+... ++.....+ ++++.+..
T Consensus 212 ~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~~~l~~~---y~~~~e~~---~~~~~l~~--------------- 267 (493)
T 2uy1_A 212 AEEVYFFYSEYLIGIGQKEKAKKVVERGIEM---SDGMFLSLY---YGLVMDEE---AVYGDLKR--------------- 267 (493)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHHH---HHHHTTCT---HHHHHHHH---------------
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCcHHHHHH---HHhhcchh---HHHHHHHH---------------
Confidence 3556777777778888899999999888887 554433322 11111111 11111111
Q ss_pred HHHhcCCHHHHHHHHhcCCCCCCceeeeHHHHHHHHHcCChhhHHHHHHHhcccCCCCCChhhHH--HHHHHhcCccchH
Q 040319 378 MLTRCGRMADAEKMFYRWPTDRDDSIIWTSMICGYARSGKPEHAILLFHQSQSEATVVPDEIALT--SVLGVCGTLGFHE 455 (812)
Q Consensus 378 ~y~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~--~ll~a~~~~~~~~ 455 (812)
.|.... .+.+ .....++....|...+....+.+..+.|..+|.+... .+ ++...|. +.+.... .++.+
T Consensus 268 ~~~~~~-~~~~-----~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A~~-~~--~~~~v~i~~A~lE~~~-~~d~~ 337 (493)
T 2uy1_A 268 KYSMGE-AESA-----EKVFSKELDLLRINHLNYVLKKRGLELFRKLFIELGN-EG--VGPHVFIYCAFIEYYA-TGSRA 337 (493)
T ss_dssp HTC----------------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTT-SC--CCHHHHHHHHHHHHHH-HCCSH
T ss_pred HHHhhc-cchh-----hhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHhhC-CC--CChHHHHHHHHHHHHH-CCChH
Confidence 110000 0000 0000011134566667666667778888888887722 22 2222232 1121111 22588
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHhhhcCCHHHHHHHHccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 040319 456 MGKQIHSYALKTGFSSDLGVANSMVSMYFKCCNMSNAIKAFNKMPSHDIVSWNGLIAGHLLHRQGDEALAVWSSMEK 532 (812)
Q Consensus 456 ~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 532 (812)
.|+.+++..++.. +.++..+...++...+.|+.+.|+.+|+.+. .....|...+.--..+|+.+.+.++++++..
T Consensus 338 ~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 338 TPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLE-KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 8999999888754 3345566778888889999999999999984 4677888888887888999999998888875
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.37 E-value=7.2e-06 Score=82.92 Aligned_cols=211 Identities=10% Similarity=0.089 Sum_probs=163.2
Q ss_pred chHHHHHHHHHHHHhCCCCchhHHHHHHHHhhhcC--CHHHHHHHHccCCC---CChhHHHHHHHHH----Hhc---CCh
Q 040319 453 FHEMGKQIHSYALKTGFSSDLGVANSMVSMYFKCC--NMSNAIKAFNKMPS---HDIVSWNGLIAGH----LLH---RQG 520 (812)
Q Consensus 453 ~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g--~~~~A~~~f~~~~~---~~~~~~~~li~~~----~~~---g~~ 520 (812)
..++|..+.+.++..+ +.+..+|+.--..+...| ++++++..++.+.. .+...|+.-...+ ... +++
T Consensus 48 ~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~ 126 (306)
T 3dra_A 48 YSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDP 126 (306)
T ss_dssp CSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCT
T ss_pred CCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCH
Confidence 3467888888888755 234556777777777778 99999999998765 5667888765555 555 789
Q ss_pred HHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcCCCCchHH--HHHHHHHHhhhhcCccC-CcchHHHHHHHHhhcCC----
Q 040319 521 DEALAVWSSMEKASIKPDA-ITFVLIISAYRYTNLNLVD--SCRKLFLSMKTIYNIEP-TSEHYASLVSVLGYWGF---- 592 (812)
Q Consensus 521 ~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~~~g~~~--~a~~~~~~m~~~~~~~p-~~~~y~~li~~l~~~g~---- 592 (812)
++++++++++.+ ..|.. ..+..-.-...+ .|.++ ++.++++.+.+. .| +-..|+.-..++.+.|+
T Consensus 127 ~~EL~~~~~~l~--~~pkny~aW~~R~~vl~~--l~~~~~~~EL~~~~~~i~~---d~~N~sAW~~R~~ll~~l~~~~~~ 199 (306)
T 3dra_A 127 YREFDILEAMLS--SDPKNHHVWSYRKWLVDT--FDLHNDAKELSFVDKVIDT---DLKNNSAWSHRFFLLFSKKHLATD 199 (306)
T ss_dssp HHHHHHHHHHHH--HCTTCHHHHHHHHHHHHH--TTCTTCHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHSSGGGCCH
T ss_pred HHHHHHHHHHHH--hCCCCHHHHHHHHHHHHH--hcccChHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhccccchh
Confidence 999999999999 66755 555555445555 66666 999999999872 34 45567766777777776
Q ss_pred --hHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCC-HHHHHHHHHHHHccC---CCCCchHHHHHhhhhhCCCcchHHH
Q 040319 593 --LEEAEETINNMP-FQP-KVSVWRALLDSCRIRLN-TTIGKRVAKHILAME---PQDPATYILVSNLYSSSGRWHNSEL 664 (812)
Q Consensus 593 --~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~---p~~~~~~~~l~~~y~~~g~~~~a~~ 664 (812)
++++++.++++. ..| |...|+-+...+...|+ .+.....++++++++ |.++.++..++++|.+.|+.++|.+
T Consensus 200 ~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~ 279 (306)
T 3dra_A 200 NTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRT 279 (306)
T ss_dssp HHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHH
Confidence 899999998865 556 78999999988888876 444666888888876 8888999999999999999999999
Q ss_pred HHHHHHh
Q 040319 665 VREDMRE 671 (812)
Q Consensus 665 ~~~~m~~ 671 (812)
+++.+.+
T Consensus 280 ~~~~l~~ 286 (306)
T 3dra_A 280 VYDLLKS 286 (306)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9999865
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.34 E-value=4e-06 Score=80.62 Aligned_cols=144 Identities=8% Similarity=-0.054 Sum_probs=104.5
Q ss_pred HHHHHHHhhhcCCHHHHHHHHccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcCCCC
Q 040319 476 ANSMVSMYFKCCNMSNAIKAFNKMPSHDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDA-ITFVLIISAYRYTNL 554 (812)
Q Consensus 476 ~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~~~ 554 (812)
+..+...|.+.|++++|...|++...|+...|..+...|...|++++|++.|++..+ ..|+. ..+..+..++.. .
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~~~~~~~~~~lg~~~~~--~ 84 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSIN--RDKHLAVAYFQRGMLYYQ--T 84 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHH--T
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCccchHHHHHHHHHHHH--c
Confidence 445667788889999999999988888888888899999999999999999998888 45554 566666677777 8
Q ss_pred chHHHHHHHHHHhhhhcCccCCcchHHHHHHHHhhcCChHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHH
Q 040319 555 NLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLEEAEETINNMPFQPK-VSVWRALLDSCRIRLNTTIGKRVAK 633 (812)
Q Consensus 555 g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~ 633 (812)
|++++|.+.|+...+. .|+..... +...| +...|+ ..+|..+..++...|+.+.|...++
T Consensus 85 ~~~~~A~~~~~~al~~---~~~~~~~~-----~~~~~-----------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 145 (213)
T 1hh8_A 85 EKYDLAIKDLKEALIQ---LRGNQLID-----YKILG-----------LQFKLFACEVLYNIAFMYAKKEEWKKAEEQLA 145 (213)
T ss_dssp TCHHHHHHHHHHHHHT---TTTCSEEE-----CGGGT-----------BCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHh---CCCccHHH-----HHHhc-----------cccCccchHHHHHHHHHHHHccCHHHHHHHHH
Confidence 8888888888877652 22211000 00000 112332 4577778888888999999999999
Q ss_pred HHHccCCCC
Q 040319 634 HILAMEPQD 642 (812)
Q Consensus 634 ~~~~~~p~~ 642 (812)
+++++.|++
T Consensus 146 ~al~~~p~~ 154 (213)
T 1hh8_A 146 LATSMKSEP 154 (213)
T ss_dssp HHHTTCCSG
T ss_pred HHHHcCccc
Confidence 999999875
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.31 E-value=6.6e-06 Score=71.91 Aligned_cols=119 Identities=8% Similarity=-0.072 Sum_probs=86.3
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCCcchH
Q 040319 502 HDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPD-AITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHY 580 (812)
Q Consensus 502 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y 580 (812)
.+...|..+...+...|++++|+..|++..+ ..|+ ...+..+...+.. .|++++|.++|+...+.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~la~~~~~--~~~~~~A~~~~~~a~~~---------- 79 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIK--RNPKDAKLYSNRAACYTK--LLEFQLALKDCEECIQL---------- 79 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHT--TCTTCHHHHHHHHHHHTT--TTCHHHHHHHHHHHHHH----------
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHH--hccHHHHHHHHHHHHHh----------
Confidence 3456677777778888888888888888777 4453 3455555555555 66666666666655541
Q ss_pred HHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCC
Q 040319 581 ASLVSVLGYWGFLEEAEETINNMPFQPKVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGR 658 (812)
Q Consensus 581 ~~li~~l~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~ 658 (812)
.+.+..+|..+...+...|+.+.|...++++++++|++...+..++.+|...|+
T Consensus 80 ------------------------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 80 ------------------------EPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp ------------------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred ------------------------CCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 122456777777888888999999999999999999999999999998887764
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.30 E-value=3.4e-06 Score=71.13 Aligned_cols=98 Identities=8% Similarity=0.030 Sum_probs=86.1
Q ss_pred CcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCC--CCchHHHHHh
Q 040319 576 TSEHYASLVSVLGYWGFLEEAEETINNMP-FQP-KVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQ--DPATYILVSN 651 (812)
Q Consensus 576 ~~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~--~~~~~~~l~~ 651 (812)
+...|..+...+.+.|++++|...+++.. ..| +..+|..+...+...|+.+.|...+++++++.|+ ++..+..++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 35677788888999999999999988854 334 6778888999999999999999999999999999 9999999999
Q ss_pred hhhhC-CCcchHHHHHHHHHhCC
Q 040319 652 LYSSS-GRWHNSELVREDMREKG 673 (812)
Q Consensus 652 ~y~~~-g~~~~a~~~~~~m~~~g 673 (812)
+|... |++++|.+.++......
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHHhCCHHHHHHHHHHHhhcc
Confidence 99999 99999999999986543
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.30 E-value=2.6e-06 Score=79.25 Aligned_cols=116 Identities=9% Similarity=0.066 Sum_probs=87.9
Q ss_pred CchHHHHHHHHHHhhhhcCccC-CcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHH-HHhcCCH--HH
Q 040319 554 LNLVDSCRKLFLSMKTIYNIEP-TSEHYASLVSVLGYWGFLEEAEETINNMP-FQP-KVSVWRALLDS-CRIRLNT--TI 627 (812)
Q Consensus 554 ~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~-~~~~~~~--~~ 627 (812)
.|++++|...|+...+. .| +...|..+..+|...|++++|.+.+++.. ..| +...|..+... +...|+. +.
T Consensus 23 ~~~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIRA---NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp ----CCCCHHHHHHHHH---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred ccCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHH
Confidence 66777777777766552 23 45677778888888888888888887754 334 56677777777 7778887 99
Q ss_pred HHHHHHHHHccCCCCCchHHHHHhhhhhCCCcchHHHHHHHHHhC
Q 040319 628 GKRVAKHILAMEPQDPATYILVSNLYSSSGRWHNSELVREDMREK 672 (812)
Q Consensus 628 a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 672 (812)
|...++++++++|+++..+..++.+|...|++++|...+++..+.
T Consensus 100 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 100 TRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 999999999999998889999999999999999999988887654
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.28 E-value=9.9e-06 Score=82.11 Aligned_cols=150 Identities=7% Similarity=-0.035 Sum_probs=73.0
Q ss_pred HHHHhcCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHhhhcCCHHHHHHHHccCCC--CChhHHHH-HHHHHHhcCCh
Q 040319 444 VLGVCGTLGFHEMGKQIHSYALKTGFSSDLGVANSMVSMYFKCCNMSNAIKAFNKMPS--HDIVSWNG-LIAGHLLHRQG 520 (812)
Q Consensus 444 ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~--~~~~~~~~-li~~~~~~g~~ 520 (812)
+...+...|+++.|...++.+.+.. +.+...+..|...|.+.|++++|...|+++.. |+...+.. ....+...++.
T Consensus 123 ~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~ 201 (287)
T 3qou_A 123 QAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAAD 201 (287)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhccc
Confidence 3344445555555555555555433 22344555555666666666666666665544 33322221 11224445555
Q ss_pred HHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCC---cchHHHHHHHHhhcCChHHH
Q 040319 521 DEALAVWSSMEKASIKPDA-ITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPT---SEHYASLVSVLGYWGFLEEA 596 (812)
Q Consensus 521 ~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~---~~~y~~li~~l~~~g~~~~A 596 (812)
++|+..|++..+ ..|+. ..+..+..++.. .|++++|...|..+.+. .|+ ...+..++.+|...|+.++|
T Consensus 202 ~~a~~~l~~al~--~~P~~~~~~~~la~~l~~--~g~~~~A~~~l~~~l~~---~p~~~~~~a~~~l~~~~~~~g~~~~a 274 (287)
T 3qou_A 202 TPEIQQLQQQVA--ENPEDAALATQLALQLHQ--VGRNEEALELLFGHLRX---DLTAADGQTRXTFQEILAALGTGDAL 274 (287)
T ss_dssp CHHHHHHHHHHH--HCTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHH---CTTGGGGHHHHHHHHHHHHHCTTCHH
T ss_pred CccHHHHHHHHh--cCCccHHHHHHHHHHHHH--cccHHHHHHHHHHHHhc---ccccccchHHHHHHHHHHHcCCCCcH
Confidence 555555555555 34443 334444444445 55555555555555442 222 33444555555555555544
Q ss_pred HHHHH
Q 040319 597 EETIN 601 (812)
Q Consensus 597 ~~~~~ 601 (812)
...++
T Consensus 275 ~~~~r 279 (287)
T 3qou_A 275 ASXYR 279 (287)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.28 E-value=4.1e-06 Score=72.89 Aligned_cols=84 Identities=7% Similarity=-0.034 Sum_probs=62.5
Q ss_pred cchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhh
Q 040319 577 SEHYASLVSVLGYWGFLEEAEETINNMP-FQP-KVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYS 654 (812)
Q Consensus 577 ~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~ 654 (812)
...|..+..++...|++++|.+.+++.. ..| +...|..+...+...|+.+.|...+++++++.|+++..+..++.+|.
T Consensus 46 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 125 (131)
T 2vyi_A 46 AVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAEL 125 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHH
Confidence 3444555555555566666665555533 233 46678888888889999999999999999999999999999999999
Q ss_pred hCCCcc
Q 040319 655 SSGRWH 660 (812)
Q Consensus 655 ~~g~~~ 660 (812)
..|+++
T Consensus 126 ~~~~~~ 131 (131)
T 2vyi_A 126 KLREAP 131 (131)
T ss_dssp HHTTCC
T ss_pred HHhcCC
Confidence 888764
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.28 E-value=3.1e-06 Score=73.57 Aligned_cols=95 Identities=8% Similarity=-0.043 Sum_probs=83.4
Q ss_pred cchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhh
Q 040319 577 SEHYASLVSVLGYWGFLEEAEETINNMP-FQP-KVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYS 654 (812)
Q Consensus 577 ~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~ 654 (812)
...|..+...+.+.|++++|++.+++.. ..| +...|..+..++...|+++.|...++++++++|+++..+..++.+|.
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 3456677788889999999999988854 445 67889999999999999999999999999999999999999999999
Q ss_pred hCCCcchHHHHHHHHHh
Q 040319 655 SSGRWHNSELVREDMRE 671 (812)
Q Consensus 655 ~~g~~~~a~~~~~~m~~ 671 (812)
..|++++|.+.+++..+
T Consensus 84 ~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 84 AVKEYASALETLDAART 100 (126)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHH
Confidence 99999999999988754
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.28 E-value=0.00021 Score=78.08 Aligned_cols=201 Identities=9% Similarity=-0.018 Sum_probs=116.7
Q ss_pred hHHHHHHHhcccCCCCCChhhHHHHHHHhcCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHhhhcCCHHHH-HHHHcc
Q 040319 420 HAILLFHQSQSEATVVPDEIALTSVLGVCGTLGFHEMGKQIHSYALKTGFSSDLGVANSMVSMYFKCCNMSNA-IKAFNK 498 (812)
Q Consensus 420 ~A~~~~~~m~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A-~~~f~~ 498 (812)
.+..+|+++.. . .+-+...|...+.-+...|+.+.|..+++.+++. +.+...+.. |+...+.++. ..+.+.
T Consensus 197 Rv~~~ye~al~-~-~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~~~~~~~l~~~ 268 (493)
T 2uy1_A 197 RMHFIHNYILD-S-FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDEEAVYGDLKRK 268 (493)
T ss_dssp HHHHHHHHHHH-H-TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTCTHHHHHHHHH
T ss_pred HHHHHHHHHHH-c-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcchhHHHHHHHHH
Confidence 34566666654 1 2223344555555556667777777777777776 333333322 2221111111 111111
Q ss_pred CC----------C--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHH--HHHHHhcCCCCchHHHHHHHH
Q 040319 499 MP----------S--HDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDAITFV--LIISAYRYTNLNLVDSCRKLF 564 (812)
Q Consensus 499 ~~----------~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~--~ll~a~~~~~~g~~~~a~~~~ 564 (812)
.. . .....|-..+..+.+++..+.|.++|++. +. -.++...|. +.+... . .++.+.|..+|
T Consensus 269 ~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~-~--~~d~~~ar~if 343 (493)
T 2uy1_A 269 YSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYY-A--TGSRATPYNIF 343 (493)
T ss_dssp TC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHH-H--HCCSHHHHHHH
T ss_pred HHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHH-H--CCChHHHHHHH
Confidence 10 0 11245666777776777888888888888 31 112223332 222221 1 23588888888
Q ss_pred HHhhhhcCccCCcchHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHc
Q 040319 565 LSMKTIYNIEPTSEHYASLVSVLGYWGFLEEAEETINNMPFQPKVSVWRALLDSCRIRLNTTIGKRVAKHILA 637 (812)
Q Consensus 565 ~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 637 (812)
+...+.++- ++..|...++...+.|+.+.|..++++.. .....|...+.--..+|+.+.+..++++.++
T Consensus 344 e~al~~~~~--~~~~~~~yid~e~~~~~~~~aR~l~er~~--k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 344 SSGLLKHPD--STLLKEEFFLFLLRIGDEENARALFKRLE--KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHCTT--CHHHHHHHHHHHHHHTCHHHHHHHHHHSC--CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 888764422 24456677888888888888888888873 3567788888877788888888777777653
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.28 E-value=4.7e-06 Score=71.76 Aligned_cols=80 Identities=15% Similarity=0.144 Sum_probs=56.4
Q ss_pred chHHHHHHHHhhcCChHHHHHHHHhCC-C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhh
Q 040319 578 EHYASLVSVLGYWGFLEEAEETINNMP-F-QPKVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSS 655 (812)
Q Consensus 578 ~~y~~li~~l~~~g~~~~A~~~~~~m~-~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~ 655 (812)
..+..++.++.+.|++++|...++++. . +.+..+|..+...+...|+.+.|...+++++++.|+++..+..++.++..
T Consensus 44 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 123 (125)
T 1na0_A 44 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQK 123 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh
Confidence 344445555555555555555555533 2 23566777888888888899999999999999999888888888888765
Q ss_pred CC
Q 040319 656 SG 657 (812)
Q Consensus 656 ~g 657 (812)
.|
T Consensus 124 ~g 125 (125)
T 1na0_A 124 QG 125 (125)
T ss_dssp HC
T ss_pred cc
Confidence 54
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.27 E-value=4.4e-06 Score=76.46 Aligned_cols=94 Identities=10% Similarity=-0.038 Sum_probs=67.6
Q ss_pred cchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHH--Hhh
Q 040319 577 SEHYASLVSVLGYWGFLEEAEETINNMP-FQP-KVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILV--SNL 652 (812)
Q Consensus 577 ~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l--~~~ 652 (812)
...|..+..++...|++++|++.+++.. ..| +..+|..+...+...|+.+.|...+++++++.|+++..+..+ +..
T Consensus 47 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~ 126 (166)
T 1a17_A 47 AIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNK 126 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 3444555555555566666655555532 233 566788888888889999999999999999999988877444 444
Q ss_pred hhhCCCcchHHHHHHHHH
Q 040319 653 YSSSGRWHNSELVREDMR 670 (812)
Q Consensus 653 y~~~g~~~~a~~~~~~m~ 670 (812)
+.+.|++++|.+.+....
T Consensus 127 ~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 127 IVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccchH
Confidence 888899999998887664
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.26 E-value=1.6e-06 Score=74.83 Aligned_cols=95 Identities=13% Similarity=0.028 Sum_probs=85.4
Q ss_pred cchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhh
Q 040319 577 SEHYASLVSVLGYWGFLEEAEETINNMP-FQP-KVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYS 654 (812)
Q Consensus 577 ~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~ 654 (812)
...+..+...+.+.|++++|+..+++.. ..| +...|..+..++...|+.+.|+..++++++++|+++.++..++.+|.
T Consensus 17 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 17 HENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT 96 (121)
T ss_dssp CSCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 3456677888999999999999999865 556 68889989899999999999999999999999999999999999999
Q ss_pred hCCCcchHHHHHHHHHh
Q 040319 655 SSGRWHNSELVREDMRE 671 (812)
Q Consensus 655 ~~g~~~~a~~~~~~m~~ 671 (812)
..|++++|.+.+++..+
T Consensus 97 ~~g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 97 NEHNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 99999999999998754
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.25 E-value=1e-06 Score=83.81 Aligned_cols=169 Identities=7% Similarity=-0.095 Sum_probs=108.6
Q ss_pred HHHHhhhcCCHHHHHHHHccCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCc
Q 040319 479 MVSMYFKCCNMSNAIKAFNKMPS---HDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDAITFVLIISAYRYTNLN 555 (812)
Q Consensus 479 Li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~g 555 (812)
.+......|++++|.+.++.-.+ .....|..+...+...|++++|+..|++.++ +.|+...+. .+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~----------~~ 77 (198)
T 2fbn_A 10 HSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALD--FFIHTEEWD----------DQ 77 (198)
T ss_dssp ------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTTTCTTCC----------CH
T ss_pred hhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HHhcccccc----------hh
Confidence 34445556677777766654433 2445677888888899999999999999988 444421110 00
Q ss_pred hHHHHHHHHHHhhhhcCccCCcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 040319 556 LVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLEEAEETINNMP-FQP-KVSVWRALLDSCRIRLNTTIGKRVAK 633 (812)
Q Consensus 556 ~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~ 633 (812)
....-.. . .....|..+..+|.+.|++++|+..+++.. ..| +...|..+..++...|+++.|...++
T Consensus 78 ~~~~~~~---~--------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~ 146 (198)
T 2fbn_A 78 ILLDKKK---N--------IEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLY 146 (198)
T ss_dssp HHHHHHH---H--------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred hHHHHHH---H--------HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 0000000 0 013456777788888888888888887754 344 67788888899999999999999999
Q ss_pred HHHccCCCCCchHHHHHhhhhhCCCcchHH-HHHHHHH
Q 040319 634 HILAMEPQDPATYILVSNLYSSSGRWHNSE-LVREDMR 670 (812)
Q Consensus 634 ~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~-~~~~~m~ 670 (812)
++++++|+++.++..++.++...|+.+++. ..++.|-
T Consensus 147 ~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f 184 (198)
T 2fbn_A 147 KAASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMF 184 (198)
T ss_dssp HHHHHSTTCHHHHHHHHHHHHHHHHHHC----------
T ss_pred HHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999998888777 4455553
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.24 E-value=1.3e-06 Score=78.64 Aligned_cols=110 Identities=8% Similarity=-0.026 Sum_probs=73.4
Q ss_pred CCCCH-HHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccC-CcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHH
Q 040319 535 IKPDA-ITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEP-TSEHYASLVSVLGYWGFLEEAEETINNMP-FQP-KVS 610 (812)
Q Consensus 535 ~~pd~-~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p-~~~ 610 (812)
+.|+. ..+..+...+.. .|++++|...|+.... +.| +...|..+..+|.+.|++++|++.+++.. ..| +..
T Consensus 16 ~~p~~~~~~~~~g~~~~~--~g~~~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~ 90 (148)
T 2vgx_A 16 ISSDTLEQLYSLAFNQYQ--SGXYEDAHXVFQALCV---LDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPR 90 (148)
T ss_dssp CCHHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTH
T ss_pred CCHhhHHHHHHHHHHHHH--cCChHHHHHHHHHHHH---cCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCch
Confidence 44443 233334444555 6666666666666554 233 35566666667777777777777776643 344 566
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHH
Q 040319 611 VWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILV 649 (812)
Q Consensus 611 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 649 (812)
.|..+..++...|+.+.|+..+++++++.|+++......
T Consensus 91 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 129 (148)
T 2vgx_A 91 FPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELS 129 (148)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchHHH
Confidence 788888888899999999999999999999877664433
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.22 E-value=3e-06 Score=76.20 Aligned_cols=86 Identities=5% Similarity=-0.065 Sum_probs=51.2
Q ss_pred CchHHHHHHHHHHhhhhcCccCC-cchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHH
Q 040319 554 LNLVDSCRKLFLSMKTIYNIEPT-SEHYASLVSVLGYWGFLEEAEETINNMP-FQP-KVSVWRALLDSCRIRLNTTIGKR 630 (812)
Q Consensus 554 ~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~ 630 (812)
.|++++|...|+...+ +.|+ ...|..+..+|.+.|++++|++.|++.. +.| ++..|..+..++...|+.++|..
T Consensus 49 ~g~~~eA~~~~~~al~---~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~lg~~~eA~~ 125 (151)
T 3gyz_A 49 KGRIEEAEVFFRFLCI---YDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKE 125 (151)
T ss_dssp TTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHH
Confidence 4444444444444443 2232 4445555555555555555555555533 344 45667777777777788888888
Q ss_pred HHHHHHccCCCC
Q 040319 631 VAKHILAMEPQD 642 (812)
Q Consensus 631 ~~~~~~~~~p~~ 642 (812)
.+++++++.|++
T Consensus 126 ~~~~al~l~~~~ 137 (151)
T 3gyz_A 126 CFELVIQHSNDE 137 (151)
T ss_dssp HHHHHHHHCCCH
T ss_pred HHHHHHHhCCCH
Confidence 888888887763
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.19 E-value=6.5e-06 Score=72.61 Aligned_cols=98 Identities=7% Similarity=-0.050 Sum_probs=86.1
Q ss_pred CCcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhh
Q 040319 575 PTSEHYASLVSVLGYWGFLEEAEETINNMP-FQP-KVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNL 652 (812)
Q Consensus 575 p~~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 652 (812)
.+...|..+...+...|++++|+..+++.. ..| +..+|..+...+...|+.+.|...++++++++|+++..+..++.+
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 86 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 86 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 346778888889999999999999988854 445 578888899999999999999999999999999999999999999
Q ss_pred hhhCCCcchHHHHHHHHHhC
Q 040319 653 YSSSGRWHNSELVREDMREK 672 (812)
Q Consensus 653 y~~~g~~~~a~~~~~~m~~~ 672 (812)
|...|++++|.+.+++..+.
T Consensus 87 ~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHH
Confidence 99999999999999887543
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.19 E-value=8.5e-07 Score=87.56 Aligned_cols=181 Identities=8% Similarity=-0.062 Sum_probs=122.5
Q ss_pred hcCCHHHHHHHHccCCC---CChhHHHHH-------HHHHHhcCChHHHHHHHHHHHHCCCCCCHH--------------
Q 040319 485 KCCNMSNAIKAFNKMPS---HDIVSWNGL-------IAGHLLHRQGDEALAVWSSMEKASIKPDAI-------------- 540 (812)
Q Consensus 485 k~g~~~~A~~~f~~~~~---~~~~~~~~l-------i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~-------------- 540 (812)
..++.+.|.+.|.++.. .....|+.+ ...+...++..+++..+++-.+ +.|+..
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence 46778888888877654 334677777 4555555666666666555544 444321
Q ss_pred --------HHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCCcchHHHHHHHHhhcCChHHHHHHHHhCCCCCCH---
Q 040319 541 --------TFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLEEAEETINNMPFQPKV--- 609 (812)
Q Consensus 541 --------t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~~~p~~--- 609 (812)
....+..++.. .|++++|.+.|+.+.. ..|+....-.+..++.+.|++++|+..++.....|+.
T Consensus 96 ~~v~~r~dl~LayA~~L~~--~g~y~eA~~~l~~~~~---~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~ 170 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAA--QGNYADAMEALEAAPV---AGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLA 170 (282)
T ss_dssp EECSSHHHHHHHHHHHHHH--HTCHHHHHHHHTSSCC---TTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHH
T ss_pred cccCCHhHHHHHHHHHHHH--CCCHHHHHHHHHHHHh---cCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccH
Confidence 11112334445 7888888888887764 2354335666667888888899998888865533332
Q ss_pred -HHHHHHHHHHHhcCCHHHHHHHHHHHHccC--CC-CCchHHHHHhhhhhCCCcchHHHHHHHHHhC
Q 040319 610 -SVWRALLDSCRIRLNTTIGKRVAKHILAME--PQ-DPATYILVSNLYSSSGRWHNSELVREDMREK 672 (812)
Q Consensus 610 -~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--p~-~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 672 (812)
.++..+..++...|+.++|+..++++..-. |. .+.....++.++.+.|+.++|..+++++...
T Consensus 171 ~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 171 GAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 366677778888899999999888887543 44 4457788888899999999999988888653
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.18 E-value=8.1e-05 Score=75.59 Aligned_cols=158 Identities=11% Similarity=-0.082 Sum_probs=119.4
Q ss_pred HHHHhhhcCCHHHHHHHHccCCC-----CCh----hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-CC----HHHHHH
Q 040319 479 MVSMYFKCCNMSNAIKAFNKMPS-----HDI----VSWNGLIAGHLLHRQGDEALAVWSSMEKASIK-PD----AITFVL 544 (812)
Q Consensus 479 Li~~y~k~g~~~~A~~~f~~~~~-----~~~----~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-pd----~~t~~~ 544 (812)
.+..+.+.|++++|..++++..+ ++. ..+..+...|...|++++|+..|++..+.... ++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 46778899999999999987554 221 13334666777788999999999999984322 23 135788
Q ss_pred HHHHhcCCCCchHHHHHHHHHHhhhhc----CccCC-cchHHHHHHHHhhcCChHHHHHHHHhCC-------CCCC-HHH
Q 040319 545 IISAYRYTNLNLVDSCRKLFLSMKTIY----NIEPT-SEHYASLVSVLGYWGFLEEAEETINNMP-------FQPK-VSV 611 (812)
Q Consensus 545 ll~a~~~~~~g~~~~a~~~~~~m~~~~----~~~p~-~~~y~~li~~l~~~g~~~~A~~~~~~m~-------~~p~-~~~ 611 (812)
+..+|.. .|++++|..+|+.+.+.. +..|. ...|..+..+|.+.|++++|++.+++.. ..+. ..+
T Consensus 161 lg~~y~~--~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~ 238 (293)
T 3u3w_A 161 IANIYAE--NGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQL 238 (293)
T ss_dssp HHHHHHH--TTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHH
T ss_pred HHHHHHH--cCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHH
Confidence 8888888 999999999999887422 11222 3478899999999999999999988743 1222 668
Q ss_pred HHHHHHHHHhcC-CHHHHHHHHHHHHcc
Q 040319 612 WRALLDSCRIRL-NTTIGKRVAKHILAM 638 (812)
Q Consensus 612 ~~~ll~~~~~~~-~~~~a~~~~~~~~~~ 638 (812)
|..+..++...| +.++|...+++++++
T Consensus 239 ~~~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 239 YYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 888888999999 579999999998865
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.17 E-value=2.9e-06 Score=83.76 Aligned_cols=138 Identities=9% Similarity=0.039 Sum_probs=94.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCC--cchHHHHHHH
Q 040319 509 GLIAGHLLHRQGDEALAVWSSMEKASIKPDAITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPT--SEHYASLVSV 586 (812)
Q Consensus 509 ~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~y~~li~~ 586 (812)
.....+...|++++|.++|+.+.. ..|+......+...+.+ .|++++|+..|+...+ .. .|. ...+..+..+
T Consensus 107 ayA~~L~~~g~y~eA~~~l~~~~~--~~p~~~~~~~~a~l~~~--~~r~~dA~~~l~~a~~-~~-d~~~~~~a~~~LG~a 180 (282)
T 4f3v_A 107 GFAACEAAQGNYADAMEALEAAPV--AGSEHLVAWMKAVVYGA--AERWTDVIDQVKSAGK-WP-DKFLAGAAGVAHGVA 180 (282)
T ss_dssp HHHHHHHHHTCHHHHHHHHTSSCC--TTCHHHHHHHHHHHHHH--TTCHHHHHHHHTTGGG-CS-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHh--cCCchHHHHHHHHHHHH--cCCHHHHHHHHHHhhc-cC-CcccHHHHHHHHHHH
Confidence 345566677777777777777766 34655433333334555 7788888888865443 10 111 2356777888
Q ss_pred HhhcCChHHHHHHHHhCC---CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhh
Q 040319 587 LGYWGFLEEAEETINNMP---FQPK--VSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLY 653 (812)
Q Consensus 587 l~~~g~~~~A~~~~~~m~---~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y 653 (812)
+.+.|++++|++.+++.. ..|. ...+..+..+++..|+.++|...++++++.+|+ +.+...|.+.-
T Consensus 181 l~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~~~~ 251 (282)
T 4f3v_A 181 AANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALKDPS 251 (282)
T ss_dssp HHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHHCTT
T ss_pred HHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHhCCC
Confidence 888888888888888753 2243 336677777889999999999999999999998 77777765543
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.17 E-value=4.7e-06 Score=76.41 Aligned_cols=95 Identities=8% Similarity=-0.041 Sum_probs=77.0
Q ss_pred cchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhh
Q 040319 577 SEHYASLVSVLGYWGFLEEAEETINNMP-FQP-KVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYS 654 (812)
Q Consensus 577 ~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~ 654 (812)
...|..+...+.+.|++++|++.+++.. ..| +...|..+..++...|+++.|+..++++++++|+++..|..++.+|.
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 90 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARF 90 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 4566777778888888888888887754 445 67788888888888888888888888888888888888888888888
Q ss_pred hCCCcchHHHHHHHHHh
Q 040319 655 SSGRWHNSELVREDMRE 671 (812)
Q Consensus 655 ~~g~~~~a~~~~~~m~~ 671 (812)
..|++++|.+.+++..+
T Consensus 91 ~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 91 DMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHH
Confidence 88888888888887754
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.17 E-value=7.8e-06 Score=69.52 Aligned_cols=95 Identities=7% Similarity=0.017 Sum_probs=72.7
Q ss_pred cchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhh
Q 040319 577 SEHYASLVSVLGYWGFLEEAEETINNMP-FQP-KVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYS 654 (812)
Q Consensus 577 ~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~ 654 (812)
...+..++..+...|++++|.+.+++.. ..| +...|..+...+...|+.+.|...++++++++|+++..+..++.+|.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 3456667777777888888888777754 334 56677777777888888888888888888888888888888888888
Q ss_pred hCCCcchHHHHHHHHHh
Q 040319 655 SSGRWHNSELVREDMRE 671 (812)
Q Consensus 655 ~~g~~~~a~~~~~~m~~ 671 (812)
..|++++|.+.+++..+
T Consensus 84 ~~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLK 100 (118)
T ss_dssp HTTCHHHHHHHHHHHHT
T ss_pred HHhhHHHHHHHHHHHHH
Confidence 88888888888877654
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.16 E-value=1.9e-05 Score=75.01 Aligned_cols=155 Identities=13% Similarity=0.042 Sum_probs=80.6
Q ss_pred hcCCHHHHHH---HHccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCCCH-HHHHHHHHHhcCCCCch
Q 040319 485 KCCNMSNAIK---AFNKMPSHDIVSWNGLIAGHLLHRQGDEALAVWSSMEKA----SIKPDA-ITFVLIISAYRYTNLNL 556 (812)
Q Consensus 485 k~g~~~~A~~---~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~pd~-~t~~~ll~a~~~~~~g~ 556 (812)
..|++++|.+ .+..-+......|+.+...|...|++++|+..|++..+. |..|.. .++..+...+.. .|+
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~--~g~ 81 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERM--AGN 81 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH--TTC
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH--cCC
Confidence 4566777776 554433334566677777777777777777777776551 111111 333444444444 555
Q ss_pred HHHHHHHHHHhhhhcCccCCcchHHHHHHHHhhcCChHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 040319 557 VDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLEEAEETINNMPFQP--KVSVWRALLDSCRIRLNTTIGKRVAKH 634 (812)
Q Consensus 557 ~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~ 634 (812)
+++|.+++++..+...-.+ ..| ...++..+...+...|+++.|...+++
T Consensus 82 ~~~A~~~~~~al~~~~~~~-----------------------------~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 132 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLP-----------------------------EDPLAASANAYEVATVALHFGDLAGARQEYEK 132 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSC-----------------------------CCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcC-----------------------------ccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 5555555554433110011 011 122344445555556666666666666
Q ss_pred HHccCCC--C----CchHHHHHhhhhhCCCcchHHHHHHHHH
Q 040319 635 ILAMEPQ--D----PATYILVSNLYSSSGRWHNSELVREDMR 670 (812)
Q Consensus 635 ~~~~~p~--~----~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 670 (812)
++++.+. + ...+..++.+|...|++++|.+.+++..
T Consensus 133 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 174 (203)
T 3gw4_A 133 SLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRAR 174 (203)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 6544221 1 1224667777777777777777766553
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.15 E-value=7.6e-06 Score=76.04 Aligned_cols=126 Identities=11% Similarity=0.136 Sum_probs=90.7
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccC-CcchHHHHHHH-HhhcCC
Q 040319 516 LHRQGDEALAVWSSMEKASIKPDA-ITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEP-TSEHYASLVSV-LGYWGF 592 (812)
Q Consensus 516 ~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~li~~-l~~~g~ 592 (812)
..|++++|+..|++..+ ..|+. ..+..+...+.. .|++++|..+|+...+ +.| +...+..+..+ +...|+
T Consensus 22 ~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~--~~~~~~A~~~~~~al~---~~p~~~~~~~~la~~l~~~~~~ 94 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIR--ANPQNSEQWALLGEYYLW--QNDYSNSLLAYRQALQ---LRGENAELYAALATVLYYQASQ 94 (177)
T ss_dssp -----CCCCHHHHHHHH--HCCSCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHH---HHCSCHHHHHHHHHHHHHHTTT
T ss_pred hccCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHH--cCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHHHHhcCC
Confidence 45677777777777776 44543 556666666666 7888888888877765 233 45667777777 667888
Q ss_pred h--HHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHH
Q 040319 593 L--EEAEETINNMP-FQP-KVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYIL 648 (812)
Q Consensus 593 ~--~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 648 (812)
+ ++|...+++.. ..| +...|..+...+...|+.+.|...++++++++|+++.....
T Consensus 95 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 154 (177)
T 2e2e_A 95 HMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQL 154 (177)
T ss_dssp CCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHHH
T ss_pred cchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHHH
Confidence 7 88888888754 445 57788888888999999999999999999999998765443
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.15 E-value=3.7e-06 Score=73.26 Aligned_cols=94 Identities=6% Similarity=-0.053 Sum_probs=80.5
Q ss_pred chHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCc-------hHHH
Q 040319 578 EHYASLVSVLGYWGFLEEAEETINNMP-FQP-KVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPA-------TYIL 648 (812)
Q Consensus 578 ~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~-------~~~~ 648 (812)
..+..+...+.+.|++++|++.|++.. +.| +..+|..+..++...|+++.|+..++++++++|++.. +|..
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 346678888999999999999998854 556 5788999999999999999999999999999988754 5777
Q ss_pred HHhhhhhCCCcchHHHHHHHHHh
Q 040319 649 VSNLYSSSGRWHNSELVREDMRE 671 (812)
Q Consensus 649 l~~~y~~~g~~~~a~~~~~~m~~ 671 (812)
++++|...|++++|.+.+++...
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Confidence 89999999999999999987643
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.14 E-value=3.3e-05 Score=74.21 Aligned_cols=171 Identities=8% Similarity=-0.024 Sum_probs=108.8
Q ss_pred HHHHHhcCCCCCCceeeeHHHHHHHHHcCChhhHHHHHHHhcccCCCCCChhhHHHHHHHhcCcc----chHHHHHHHHH
Q 040319 388 AEKMFYRWPTDRDDSIIWTSMICGYARSGKPEHAILLFHQSQSEATVVPDEIALTSVLGVCGTLG----FHEMGKQIHSY 463 (812)
Q Consensus 388 A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~a~~~~~----~~~~a~~~~~~ 463 (812)
|.+.|++.. +..+..++..+...|...+++++|++.|++..+ .| +...+..+-..+.. + +.++|...+..
T Consensus 5 A~~~~~~aa-~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~-~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~ 78 (212)
T 3rjv_A 5 PGSQYQQQA-EAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAA-QG---DGDALALLAQLKIR-NPQQADYPQARQLAEK 78 (212)
T ss_dssp TTHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-TT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHH
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHH-cC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHH
Confidence 334444333 223355666666666666666777766666655 33 23334444444444 4 67777777777
Q ss_pred HHHhCCCCchhHHHHHHHHhhh----cCCHHHHHHHHccCCCC-C----hhHHHHHHHHHHh----cCChHHHHHHHHHH
Q 040319 464 ALKTGFSSDLGVANSMVSMYFK----CCNMSNAIKAFNKMPSH-D----IVSWNGLIAGHLL----HRQGDEALAVWSSM 530 (812)
Q Consensus 464 ~~~~g~~~~~~~~~~Li~~y~k----~g~~~~A~~~f~~~~~~-~----~~~~~~li~~~~~----~g~~~~A~~l~~~m 530 (812)
..+.| ++..+..|..+|.. .+++++|...|++..+. + +.++..|...|.. .++.++|+..|++.
T Consensus 79 A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A 155 (212)
T 3rjv_A 79 AVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGS 155 (212)
T ss_dssp HHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHH
T ss_pred HHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 76654 55666777777776 78888888888877662 2 5788888888887 77888899998888
Q ss_pred HHCCCCCCHHHHHHHHHHhcCCC----CchHHHHHHHHHHhhh
Q 040319 531 EKASIKPDAITFVLIISAYRYTN----LNLVDSCRKLFLSMKT 569 (812)
Q Consensus 531 ~~~g~~pd~~t~~~ll~a~~~~~----~g~~~~a~~~~~~m~~ 569 (812)
.+. .++...+..|-..|.... ..+.++|..+|+...+
T Consensus 156 ~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~ 196 (212)
T 3rjv_A 156 SSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCL 196 (212)
T ss_dssp HHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHH
T ss_pred HHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHH
Confidence 885 233345555555553310 2278888888887765
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.14 E-value=9.1e-06 Score=69.89 Aligned_cols=96 Identities=16% Similarity=0.205 Sum_probs=85.5
Q ss_pred cchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhh
Q 040319 577 SEHYASLVSVLGYWGFLEEAEETINNMP-FQP-KVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYS 654 (812)
Q Consensus 577 ~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~ 654 (812)
...|..+...+.+.|++++|.+.++++. ..| +..+|..+...+...|+.+.|...++++++..|+++..+..++.+|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 4667788888999999999999988865 334 67889999999999999999999999999999999999999999999
Q ss_pred hCCCcchHHHHHHHHHhC
Q 040319 655 SSGRWHNSELVREDMREK 672 (812)
Q Consensus 655 ~~g~~~~a~~~~~~m~~~ 672 (812)
..|++++|.+.++++.+.
T Consensus 89 ~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHh
Confidence 999999999999988653
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.12 E-value=3.2e-05 Score=78.60 Aligned_cols=162 Identities=9% Similarity=-0.097 Sum_probs=117.5
Q ss_pred HHHHHHHHhhhcCCHHHHHHHHccCCC--C-Ch------hHHHHHHHHHHhcCChHHHHHHHHHHHHCCC---CCC--HH
Q 040319 475 VANSMVSMYFKCCNMSNAIKAFNKMPS--H-DI------VSWNGLIAGHLLHRQGDEALAVWSSMEKASI---KPD--AI 540 (812)
Q Consensus 475 ~~~~Li~~y~k~g~~~~A~~~f~~~~~--~-~~------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~---~pd--~~ 540 (812)
.+...+..|...|++++|...+.+..+ + .. ..+..+...|...|++++|+..|++..+... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 344567778899999999888864332 1 11 2234456667788899999999999886321 122 24
Q ss_pred HHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCC-----cchHHHHHHHHhhcCChHHHHHHHHhCC-CCCC------
Q 040319 541 TFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPT-----SEHYASLVSVLGYWGFLEEAEETINNMP-FQPK------ 608 (812)
Q Consensus 541 t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p~------ 608 (812)
++..+...|.. .|++++|..+|+...+.....|+ ...|..+..+|.+.|++++|++.+++.. +.++
T Consensus 157 ~~~~lg~~y~~--~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~ 234 (293)
T 2qfc_A 157 IENAIANIYAE--NGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMAL 234 (293)
T ss_dssp HHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSS
T ss_pred HHHHHHHHHHH--cCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHH
Confidence 67778888888 99999999999988732222233 2588899999999999999999988743 1111
Q ss_pred -HHHHHHHHHHHHhcCCHHHH-HHHHHHHHcc
Q 040319 609 -VSVWRALLDSCRIRLNTTIG-KRVAKHILAM 638 (812)
Q Consensus 609 -~~~~~~ll~~~~~~~~~~~a-~~~~~~~~~~ 638 (812)
..+|..+...+...|+.+.| ...+++++++
T Consensus 235 ~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 235 IGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 56788888889999999999 7778887764
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.08 E-value=1e-05 Score=70.67 Aligned_cols=96 Identities=8% Similarity=-0.002 Sum_probs=86.6
Q ss_pred CcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhh
Q 040319 576 TSEHYASLVSVLGYWGFLEEAEETINNMP-FQP-KVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLY 653 (812)
Q Consensus 576 ~~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y 653 (812)
+...|..+...+.+.|++++|.+.+++.. ..| +..+|..+...+...|+.+.|...++++++++|+++..+..++.+|
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 94 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAAL 94 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 36678888999999999999999998854 455 6788988999999999999999999999999999999999999999
Q ss_pred hhCCCcchHHHHHHHHHh
Q 040319 654 SSSGRWHNSELVREDMRE 671 (812)
Q Consensus 654 ~~~g~~~~a~~~~~~m~~ 671 (812)
...|++++|.+.+++..+
T Consensus 95 ~~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 95 EAMKDYTKAMDVYQKALD 112 (133)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHH
Confidence 999999999999998754
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.07 E-value=3.5e-05 Score=68.66 Aligned_cols=119 Identities=8% Similarity=-0.053 Sum_probs=71.7
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCCcchHH
Q 040319 502 HDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDAITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYA 581 (812)
Q Consensus 502 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~ 581 (812)
.+...|..+...+...|++++|++.|++..+ ..|+... ....|.
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~--~~~~~~~----------------------------------~~~~~~ 69 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALG--LDATPQD----------------------------------QAVLHR 69 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHT--SCCCHHH----------------------------------HHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--HcccchH----------------------------------HHHHHH
Confidence 3445666666666666666666666666666 4455200 022233
Q ss_pred HHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhC
Q 040319 582 SLVSVLGYWGFLEEAEETINNMP-FQP-KVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSS 656 (812)
Q Consensus 582 ~li~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~ 656 (812)
.+..+|...|++++|++.+++.. ..| +...|..+..++...|+.+.|...++++++++|+++..+..+..+..+.
T Consensus 70 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 146 (148)
T 2dba_A 70 NRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISGPS 146 (148)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHCSC
T ss_pred HHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHhhc
Confidence 33334444444444444444322 233 4566777777788888888888888888888888877777776665443
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.07 E-value=1.1e-05 Score=70.17 Aligned_cols=92 Identities=10% Similarity=0.056 Sum_probs=73.3
Q ss_pred HHHHHHHHhhcCChHHHHHHHHhCC-CCCC-H---HHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCC---CchHHHHHh
Q 040319 580 YASLVSVLGYWGFLEEAEETINNMP-FQPK-V---SVWRALLDSCRIRLNTTIGKRVAKHILAMEPQD---PATYILVSN 651 (812)
Q Consensus 580 y~~li~~l~~~g~~~~A~~~~~~m~-~~p~-~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~~ 651 (812)
+..+...+.+.|++++|.+.+++.. ..|+ . ..|..+..++...|+.+.|...++++++..|++ +.++..++.
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHH
Confidence 3445667778888888888887754 3343 2 467777778888999999999999999999988 677889999
Q ss_pred hhhhCCCcchHHHHHHHHHh
Q 040319 652 LYSSSGRWHNSELVREDMRE 671 (812)
Q Consensus 652 ~y~~~g~~~~a~~~~~~m~~ 671 (812)
+|...|++++|.+.+++..+
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999888754
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.06 E-value=4e-06 Score=74.75 Aligned_cols=95 Identities=12% Similarity=0.049 Sum_probs=61.1
Q ss_pred CchHHHHHHHHHHhhhhcCccC-CcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHH
Q 040319 554 LNLVDSCRKLFLSMKTIYNIEP-TSEHYASLVSVLGYWGFLEEAEETINNMP-FQP-KVSVWRALLDSCRIRLNTTIGKR 630 (812)
Q Consensus 554 ~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~ 630 (812)
.|++++|...|+.... ..| +...|..+..+|.+.|++++|+..+++.. ..| +...|..+..++...|+.+.|..
T Consensus 31 ~g~~~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~ 107 (142)
T 2xcb_A 31 AGKWDDAQKIFQALCM---LDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAES 107 (142)
T ss_dssp TTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHH
T ss_pred HccHHHHHHHHHHHHH---hCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHH
Confidence 4555555555555443 123 24445555556666666666666665543 334 45677777788888899999999
Q ss_pred HHHHHHccCCCCCchHHHHHh
Q 040319 631 VAKHILAMEPQDPATYILVSN 651 (812)
Q Consensus 631 ~~~~~~~~~p~~~~~~~~l~~ 651 (812)
.+++++++.|+++........
T Consensus 108 ~~~~al~~~p~~~~~~~~~~~ 128 (142)
T 2xcb_A 108 GFYSARALAAAQPAHEALAAR 128 (142)
T ss_dssp HHHHHHHHHHTCGGGHHHHHH
T ss_pred HHHHHHHhCCCCcchHHHHHH
Confidence 999999999988776655443
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.05 E-value=1.4e-05 Score=73.03 Aligned_cols=93 Identities=6% Similarity=-0.048 Sum_probs=74.4
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHhCC-C------------------CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcc
Q 040319 579 HYASLVSVLGYWGFLEEAEETINNMP-F------------------QP-KVSVWRALLDSCRIRLNTTIGKRVAKHILAM 638 (812)
Q Consensus 579 ~y~~li~~l~~~g~~~~A~~~~~~m~-~------------------~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 638 (812)
.+......+.+.|++++|++.|++.. . .| +..+|..+..++...|+++.|...+++++++
T Consensus 13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~ 92 (162)
T 3rkv_A 13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKR 92 (162)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence 34455566666666666666665532 1 23 2457888888899999999999999999999
Q ss_pred CCCCCchHHHHHhhhhhCCCcchHHHHHHHHHh
Q 040319 639 EPQDPATYILVSNLYSSSGRWHNSELVREDMRE 671 (812)
Q Consensus 639 ~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 671 (812)
+|+++.+|..++.+|...|++++|...+++..+
T Consensus 93 ~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 125 (162)
T 3rkv_A 93 EETNEKALFRRAKARIAAWKLDEAEEDLKLLLR 125 (162)
T ss_dssp STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence 999999999999999999999999999988754
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.03 E-value=3.3e-05 Score=65.52 Aligned_cols=77 Identities=14% Similarity=0.029 Sum_probs=53.5
Q ss_pred cchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhh
Q 040319 577 SEHYASLVSVLGYWGFLEEAEETINNMP-FQP-KVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLY 653 (812)
Q Consensus 577 ~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y 653 (812)
...+..+..++.+.|++++|.+.+++.. ..| +...|..+..++...|+.+.|...++++++++|+++..+..++.+.
T Consensus 38 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 38 HVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 3444445555555556666655555532 233 5667778888888889999999999999999998887777776654
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.03 E-value=1.2e-05 Score=69.70 Aligned_cols=97 Identities=10% Similarity=-0.019 Sum_probs=86.0
Q ss_pred CcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhh
Q 040319 576 TSEHYASLVSVLGYWGFLEEAEETINNMP-FQP-KVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLY 653 (812)
Q Consensus 576 ~~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y 653 (812)
+...+..+...+...|++++|.+.+++.. ..| +..+|..+...+...|+.+.|...+++++++.|+++..+..++.+|
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 35667778888999999999999998854 344 6788888999999999999999999999999999999999999999
Q ss_pred hhCCCcchHHHHHHHHHhC
Q 040319 654 SSSGRWHNSELVREDMREK 672 (812)
Q Consensus 654 ~~~g~~~~a~~~~~~m~~~ 672 (812)
...|++++|.+.+++..+.
T Consensus 91 ~~~~~~~~A~~~~~~~~~~ 109 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALEL 109 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHhc
Confidence 9999999999999987653
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.02 E-value=0.00019 Score=73.03 Aligned_cols=223 Identities=13% Similarity=0.060 Sum_probs=136.2
Q ss_pred hhHHHHHHHhcccCCCCCChhh-HHH---HHHHhcCc-------cchHHHHHHHHHHHHhCCCCchhHHHHHHHHhhhcC
Q 040319 419 EHAILLFHQSQSEATVVPDEIA-LTS---VLGVCGTL-------GFHEMGKQIHSYALKTGFSSDLGVANSMVSMYFKCC 487 (812)
Q Consensus 419 ~~A~~~~~~m~~~~g~~p~~~t-~~~---ll~a~~~~-------~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g 487 (812)
++|+.++..+.. +.|+..| |+. ++...... ..++.+..+.+.++... +-+..+|+.-.-.+.+.|
T Consensus 47 ~eaL~~t~~~L~---~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~ 122 (331)
T 3dss_A 47 ESVLELTSQILG---ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLP 122 (331)
T ss_dssp HHHHHHHHHHHT---TCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHH---HCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccC
Confidence 366777777665 5565544 221 12211110 11456666677766644 335566666555566666
Q ss_pred --CHHHHHHHHccCCC---CChhHHHHHHHHHHhcCC-hHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcCC--------
Q 040319 488 --NMSNAIKAFNKMPS---HDIVSWNGLIAGHLLHRQ-GDEALAVWSSMEKASIKPDA-ITFVLIISAYRYT-------- 552 (812)
Q Consensus 488 --~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~-~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~-------- 552 (812)
.++++..+++.+.+ +|..+|+--...+...|. .+++++.++++++ ..|+. ..|+.....+...
T Consensus 123 ~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~--~~p~N~SAW~~R~~ll~~l~~~~~~~~ 200 (331)
T 3dss_A 123 EPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLIT--RNFSNYSSWHYRSCLLPQLHPQPDSGP 200 (331)
T ss_dssp SCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHHSCCC----
T ss_pred cccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHhhhcccccc
Confidence 47888888887765 677888877777777787 5888899998888 55654 3343332222220
Q ss_pred ----CCchHHHHHHHHHHhhhhcCccCC-cchHHHHHHHHhhc-----------CChHHHHHHHHhCC-CCCCHHHHHHH
Q 040319 553 ----NLNLVDSCRKLFLSMKTIYNIEPT-SEHYASLVSVLGYW-----------GFLEEAEETINNMP-FQPKVSVWRAL 615 (812)
Q Consensus 553 ----~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~-----------g~~~~A~~~~~~m~-~~p~~~~~~~l 615 (812)
..+.++++.+++..... +.|+ ...|+-+-.++.+. +.++++++.++++. ..||. .|.-+
T Consensus 201 ~~~~~~~~~~eEle~~~~ai~---~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~-~w~l~ 276 (331)
T 3dss_A 201 QGRLPENVLLKELELVQNAFF---TDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPEN-KWCLL 276 (331)
T ss_dssp --CCCHHHHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHH
T ss_pred ccccchHHHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCccc-chHHH
Confidence 01567788888887765 3454 55666555555555 45778888887765 66764 34322
Q ss_pred HHHH-----HhcCCHHHHHHHHHHHHccCCCCCchHHHHHh
Q 040319 616 LDSC-----RIRLNTTIGKRVAKHILAMEPQDPATYILVSN 651 (812)
Q Consensus 616 l~~~-----~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 651 (812)
-.+. ...+..+.....+.++.++||...+.|..+..
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~ 317 (331)
T 3dss_A 277 TIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRS 317 (331)
T ss_dssp HHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred HHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHH
Confidence 2221 13466777778888888888877777766544
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.02 E-value=1.9e-05 Score=70.49 Aligned_cols=96 Identities=11% Similarity=-0.020 Sum_probs=86.4
Q ss_pred CcchHHHHHHHHhhcCChHHHHHHHHhCC-CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHH
Q 040319 576 TSEHYASLVSVLGYWGFLEEAEETINNMP-FQPK----VSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVS 650 (812)
Q Consensus 576 ~~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 650 (812)
+...+..+...+.+.|++++|.+.+++.. ..|+ ..+|..+...+...|+++.|...++++++++|+++..+..++
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a 106 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRS 106 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHH
Confidence 46678888889999999999999998854 6676 678888888999999999999999999999999999999999
Q ss_pred hhhhhCCCcchHHHHHHHHHh
Q 040319 651 NLYSSSGRWHNSELVREDMRE 671 (812)
Q Consensus 651 ~~y~~~g~~~~a~~~~~~m~~ 671 (812)
.+|...|++++|.+.+++..+
T Consensus 107 ~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 107 QALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 999999999999999998754
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.99 E-value=2.3e-06 Score=93.11 Aligned_cols=161 Identities=7% Similarity=-0.020 Sum_probs=114.7
Q ss_pred hcCCHHHHHHHHccCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCchHHHHH
Q 040319 485 KCCNMSNAIKAFNKMPS---HDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDAITFVLIISAYRYTNLNLVDSCR 561 (812)
Q Consensus 485 k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~g~~~~a~ 561 (812)
..+++++|...|+...+ .+...|..+...|.+.|++++|+..|++.++ +.|+... . .+ ++..
T Consensus 246 ~l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~--~~p~~~~---------~--~~--~~~~ 310 (457)
T 1kt0_A 246 TLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVS--WLEMEYG---------L--SE--KESK 310 (457)
T ss_dssp EEEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHTTCCS---------C--CH--HHHH
T ss_pred hhhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--Hhccccc---------C--Ch--HHHH
Confidence 34455566666654433 2345788888888899999999999998887 4444311 0 00 0100
Q ss_pred HHHHHhhhhcCccCCcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccC
Q 040319 562 KLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLEEAEETINNMP-FQP-KVSVWRALLDSCRIRLNTTIGKRVAKHILAME 639 (812)
Q Consensus 562 ~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 639 (812)
+ ... -....|..+..+|.+.|++++|+..+++.. +.| +...|..+..++...|+++.|...++++++++
T Consensus 311 ~----~~~-----~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~ 381 (457)
T 1kt0_A 311 A----SES-----FLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN 381 (457)
T ss_dssp H----HHH-----HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred H----HHH-----HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 0 000 114567788888889999999999888854 445 67889999999999999999999999999999
Q ss_pred CCCCchHHHHHhhhhhCCCcchHHH-HHHHH
Q 040319 640 PQDPATYILVSNLYSSSGRWHNSEL-VREDM 669 (812)
Q Consensus 640 p~~~~~~~~l~~~y~~~g~~~~a~~-~~~~m 669 (812)
|++..++..++.++...|++++|.+ .+++|
T Consensus 382 P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 412 (457)
T 1kt0_A 382 PQNKAARLQISMCQKKAKEHNERDRRIYANM 412 (457)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998875 34444
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=97.99 E-value=6.5e-05 Score=71.20 Aligned_cols=129 Identities=9% Similarity=-0.006 Sum_probs=77.4
Q ss_pred chhHHHHHHHHhhhcCCHHHHHHHHccCCC---------CChhHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCC-
Q 040319 472 DLGVANSMVSMYFKCCNMSNAIKAFNKMPS---------HDIVSWNGLIAGHLLHRQGDEALAVWSSMEKA----SIKP- 537 (812)
Q Consensus 472 ~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~---------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p- 537 (812)
...++..+...|...|++++|...|++... ....+++.+...|...|++++|++.+++..+. +-.|
T Consensus 25 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 104 (203)
T 3gw4_A 25 ASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPL 104 (203)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHH
Confidence 455666677777777777777777665432 22356777888888899999999888887662 1122
Q ss_pred C-HHHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCC----cchHHHHHHHHhhcCChHHHHHHHHh
Q 040319 538 D-AITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPT----SEHYASLVSVLGYWGFLEEAEETINN 602 (812)
Q Consensus 538 d-~~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~y~~li~~l~~~g~~~~A~~~~~~ 602 (812)
. ...+..+...+.. .|++++|..++++..+...-.++ ...+..+..++.+.|++++|.+.+++
T Consensus 105 ~~~~~~~~lg~~~~~--~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 172 (203)
T 3gw4_A 105 AASANAYEVATVALH--FGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLR 172 (203)
T ss_dssp HHHHHHHHHHHHHHH--HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH--hCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 1 1334555556666 77788887777766531110111 12234555555555555555555543
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.97 E-value=1.3e-05 Score=71.24 Aligned_cols=91 Identities=11% Similarity=-0.053 Sum_probs=69.8
Q ss_pred HHHHHHHhhcCChHHHHHHHHhCC-CCCC-------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHcc-------C
Q 040319 581 ASLVSVLGYWGFLEEAEETINNMP-FQPK-------------VSVWRALLDSCRIRLNTTIGKRVAKHILAM-------E 639 (812)
Q Consensus 581 ~~li~~l~~~g~~~~A~~~~~~m~-~~p~-------------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-------~ 639 (812)
......+...|++++|++.|++.. +.|+ ...|..+..++...|++++|...+++++++ +
T Consensus 15 ~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~ 94 (159)
T 2hr2_A 15 LSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELN 94 (159)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCC
Confidence 344455556666666666666532 2332 338888888888889999999999999988 9
Q ss_pred CCCCchH----HHHHhhhhhCCCcchHHHHHHHHHh
Q 040319 640 PQDPATY----ILVSNLYSSSGRWHNSELVREDMRE 671 (812)
Q Consensus 640 p~~~~~~----~~l~~~y~~~g~~~~a~~~~~~m~~ 671 (812)
|+++..| ..++.+|...|++++|...+++..+
T Consensus 95 pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 95 QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 9998888 9999999999999999999888744
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=97.96 E-value=1.3e-05 Score=87.54 Aligned_cols=111 Identities=8% Similarity=-0.006 Sum_probs=87.5
Q ss_pred CchHHHHHHHHHHhhhhcCccCC-cchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHH
Q 040319 554 LNLVDSCRKLFLSMKTIYNIEPT-SEHYASLVSVLGYWGFLEEAEETINNMP-FQP-KVSVWRALLDSCRIRLNTTIGKR 630 (812)
Q Consensus 554 ~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~ 630 (812)
.|++++|.+.|++..+ +.|+ ...|..+..+|.+.|++++|++.+++.. ..| +..+|..+..++...|+.++|+.
T Consensus 19 ~g~~~~A~~~~~~Al~---~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~ 95 (477)
T 1wao_1 19 AKDYENAIKFYSQAIE---LNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALR 95 (477)
T ss_dssp TTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred hCCHHHHHHHHHHHHH---hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 6777777777777765 2443 6677788888888888888888887754 555 57788888889999999999999
Q ss_pred HHHHHHccCCCCCchHHHHHhh--hhhCCCcchHHHHHH
Q 040319 631 VAKHILAMEPQDPATYILVSNL--YSSSGRWHNSELVRE 667 (812)
Q Consensus 631 ~~~~~~~~~p~~~~~~~~l~~~--y~~~g~~~~a~~~~~ 667 (812)
.++++++++|+++..+..++.+ |.+.|++++|.+..+
T Consensus 96 ~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 96 DYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999999999999888 888899999999877
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=97.95 E-value=2.8e-05 Score=70.93 Aligned_cols=125 Identities=10% Similarity=-0.018 Sum_probs=68.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccC-CcchHHHH
Q 040319 506 SWNGLIAGHLLHRQGDEALAVWSSMEKASIKPD-AITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEP-TSEHYASL 583 (812)
Q Consensus 506 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~l 583 (812)
.|..+...+...|++++|+..|++..+ ..|+ ...+..+...+.. .|++++|...|+...+. .| +...|..+
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~~a~~~~~--~~~~~~A~~~~~~a~~~---~~~~~~~~~~~ 87 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIE--LNPSNAIYYGNRSLAYLR--TECYGYALGDATRAIEL---DKKYIKGYYRR 87 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHH---CTTCHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHH--cCCHHHHHHHHHHHHHh---CcccHHHHHHH
Confidence 444555555556666666666666555 3343 3444444445555 56666666666655541 23 34556666
Q ss_pred HHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHH--HHHHHHhcCCHHHHHHHHHHHHc
Q 040319 584 VSVLGYWGFLEEAEETINNMP-FQP-KVSVWRA--LLDSCRIRLNTTIGKRVAKHILA 637 (812)
Q Consensus 584 i~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~--ll~~~~~~~~~~~a~~~~~~~~~ 637 (812)
..++.+.|++++|.+.+++.. ..| +...+.. +...+...|++++|...+++..+
T Consensus 88 a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 88 AASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 666666666666666666543 233 3334422 22235556777777777666554
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=97.93 E-value=1.4e-05 Score=87.33 Aligned_cols=115 Identities=12% Similarity=0.072 Sum_probs=69.7
Q ss_pred HHHhhhcCCHHHHHHHHccCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcCCCCc
Q 040319 480 VSMYFKCCNMSNAIKAFNKMPS---HDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDA-ITFVLIISAYRYTNLN 555 (812)
Q Consensus 480 i~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~~~g 555 (812)
...|.+.|++++|...|++..+ .+..+|..+...|.+.|++++|++.+++.++ +.|+. .++..+..++.. .|
T Consensus 13 g~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~lg~~~~~--~g 88 (477)
T 1wao_1 13 ANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIE--LDKKYIKGYYRRAASNMA--LG 88 (477)
T ss_dssp SSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--SCTTCHHHHHHHHHHHHH--HT
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHH--cC
Confidence 4456677777777777766543 3456777777777777777777777777777 45554 455555566666 77
Q ss_pred hHHHHHHHHHHhhhhcCccCC-cchHHHHHHH--HhhcCChHHHHHHHH
Q 040319 556 LVDSCRKLFLSMKTIYNIEPT-SEHYASLVSV--LGYWGFLEEAEETIN 601 (812)
Q Consensus 556 ~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~--l~~~g~~~~A~~~~~ 601 (812)
++++|.+.|++..+. .|+ ...+..+..+ +.+.|++++|++.++
T Consensus 89 ~~~eA~~~~~~al~~---~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 89 KFRAALRDYETVVKV---KPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp CHHHHHHHHHHHHHH---STTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred CHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 777777777766652 332 3344444444 556666666666665
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=97.93 E-value=4.6e-05 Score=69.65 Aligned_cols=75 Identities=12% Similarity=-0.007 Sum_probs=53.9
Q ss_pred cchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHh
Q 040319 577 SEHYASLVSVLGYWGFLEEAEETINNMP-FQP-KVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSN 651 (812)
Q Consensus 577 ~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 651 (812)
...|..+..+|.+.|++++|++.+++.. ..| +...|..+..++...|+++.|...++++++++|+++..+...+.
T Consensus 45 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 121 (164)
T 3sz7_A 45 PIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGL 121 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 3445555555555566666665555533 344 57788888888999999999999999999999999886655543
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=97.93 E-value=0.00083 Score=68.56 Aligned_cols=169 Identities=11% Similarity=0.001 Sum_probs=87.3
Q ss_pred HHcCChhhHHHHHHHhcccCCCCCChhh-HHHHHHHhcCcc-chHHHHHHHHHHHHhCCCCchhHHHHHHHHhhhc-C-C
Q 040319 413 ARSGKPEHAILLFHQSQSEATVVPDEIA-LTSVLGVCGTLG-FHEMGKQIHSYALKTGFSSDLGVANSMVSMYFKC-C-N 488 (812)
Q Consensus 413 ~~~g~~~~A~~~~~~m~~~~g~~p~~~t-~~~ll~a~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~-g-~ 488 (812)
.+.+..++|++++.++.. +.|+..| |+.--..+...+ .++++..+.+.+++... -+..+|+.-...+.+. + +
T Consensus 65 ~~~e~se~AL~lt~~~L~---~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nP-Kny~aW~hR~wlL~~l~~~~ 140 (349)
T 3q7a_A 65 AKEEKSERALELTEIIVR---MNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNL-KSYQVWHHRLLLLDRISPQD 140 (349)
T ss_dssp HTTCCSHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHHHCCSC
T ss_pred HhCCCCHHHHHHHHHHHH---hCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHhcCCC
Confidence 334555678888888776 6666554 333333333344 36666666666665432 2444554444444444 4 5
Q ss_pred HHHHHHHHccCCC---CChhHHHHHHHHHHhcCChH--------HHHHHHHHHHHCCCCCCH-HHHHHHHHHhcCCCCch
Q 040319 489 MSNAIKAFNKMPS---HDIVSWNGLIAGHLLHRQGD--------EALAVWSSMEKASIKPDA-ITFVLIISAYRYTNLNL 556 (812)
Q Consensus 489 ~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~--------~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~~~g~ 556 (812)
.++++.+++.+.+ +|..+|+--...+.+.|.++ ++++.++++++ ..|.. ..++.....+.. .+.
T Consensus 141 ~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~--~dp~N~SAW~~R~~lL~~--l~~ 216 (349)
T 3q7a_A 141 PVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLR--VDGRNNSAWGWRWYLRVS--RPG 216 (349)
T ss_dssp CHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHTT--STT
T ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHh--ccc
Confidence 6666666666654 44556655444444444444 66666666666 34433 344444334433 332
Q ss_pred -------HHHHHHHHHHhhhhcCccCC-cchHHHHHHHHhhcCC
Q 040319 557 -------VDSCRKLFLSMKTIYNIEPT-SEHYASLVSVLGYWGF 592 (812)
Q Consensus 557 -------~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g~ 592 (812)
+++++++++.+.. +.|+ ...|+-+-.++.+.|+
T Consensus 217 ~~~~~~~~~eELe~~~~aI~---~~P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 217 AETSSRSLQDELIYILKSIH---LIPHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp CCCCHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTC
T ss_pred cccchHHHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHhcCC
Confidence 4555555555543 2232 3444444444444443
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.92 E-value=2.5e-05 Score=81.12 Aligned_cols=145 Identities=8% Similarity=-0.062 Sum_probs=89.3
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCCcchHHHHH
Q 040319 505 VSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDAITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYASLV 584 (812)
Q Consensus 505 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li 584 (812)
..|..+...+.+.|++++|+..|++.++ +.|+... +.. .|..+++...+. ...|..+.
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~--~~p~~~~-------~~~--~~~~~~~~~~l~-----------~~~~~nla 237 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIA--YMGDDFM-------FQL--YGKYQDMALAVK-----------NPCHLNIA 237 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHH--HSCHHHH-------HTC--CHHHHHHHHHHH-----------THHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH--Hhccchh-------hhh--cccHHHHHHHHH-----------HHHHHHHH
Confidence 4566777888889999999999999888 6676542 234 667766654431 23688899
Q ss_pred HHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhh-hCCCcch
Q 040319 585 SVLGYWGFLEEAEETINNMP-FQP-KVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYS-SSGRWHN 661 (812)
Q Consensus 585 ~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~-~~g~~~~ 661 (812)
.+|.+.|++++|+..+++.. ..| +...|..+..++...|+++.|+..++++++++|+++.++..|..+.. ..+..++
T Consensus 238 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~ 317 (338)
T 2if4_A 238 ACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQK 317 (338)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998864 455 67889999999999999999999999999999999999999998844 4567778
Q ss_pred HHHHHHHHHh
Q 040319 662 SELVREDMRE 671 (812)
Q Consensus 662 a~~~~~~m~~ 671 (812)
+.+++++|-.
T Consensus 318 a~~~~~~~l~ 327 (338)
T 2if4_A 318 QKEMYKGIFK 327 (338)
T ss_dssp ----------
T ss_pred HHHHHHHhhC
Confidence 8888887744
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.91 E-value=4e-05 Score=66.38 Aligned_cols=76 Identities=11% Similarity=-0.043 Sum_probs=48.3
Q ss_pred chHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccC------CCCCchHHHH
Q 040319 578 EHYASLVSVLGYWGFLEEAEETINNMP-FQP-KVSVWRALLDSCRIRLNTTIGKRVAKHILAME------PQDPATYILV 649 (812)
Q Consensus 578 ~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~------p~~~~~~~~l 649 (812)
..|..+..++.+.|++++|++.+++.. ..| +...|..+..++...|+.+.|...++++++++ |+++.....+
T Consensus 39 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l 118 (126)
T 3upv_A 39 RGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLY 118 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHH
Confidence 344444444555555555555554432 334 46677777777888888888888888888888 7766666666
Q ss_pred Hhhh
Q 040319 650 SNLY 653 (812)
Q Consensus 650 ~~~y 653 (812)
..+.
T Consensus 119 ~~~~ 122 (126)
T 3upv_A 119 YKAS 122 (126)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5544
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.90 E-value=6.4e-06 Score=70.49 Aligned_cols=82 Identities=11% Similarity=0.039 Sum_probs=55.0
Q ss_pred cCChHHHHHHHHhCC-C---CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCCcchHHH
Q 040319 590 WGFLEEAEETINNMP-F---QP-KVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWHNSEL 664 (812)
Q Consensus 590 ~g~~~~A~~~~~~m~-~---~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~ 664 (812)
.|++++|+..+++.. . .| +..+|..+...+...|+++.|...++++++++|+++..+..++.+|...|++++|.+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 455566666665533 3 24 345666777777777777777777777777778777777778888888888888877
Q ss_pred HHHHHHh
Q 040319 665 VREDMRE 671 (812)
Q Consensus 665 ~~~~m~~ 671 (812)
.+++..+
T Consensus 83 ~~~~al~ 89 (117)
T 3k9i_A 83 LLLKIIA 89 (117)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7776543
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.88 E-value=0.00019 Score=79.82 Aligned_cols=168 Identities=9% Similarity=-0.048 Sum_probs=134.5
Q ss_pred CCHHHHHHHHccCCC---CChhHHHHHHHHHHhcCC----------hHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcCC
Q 040319 487 CNMSNAIKAFNKMPS---HDIVSWNGLIAGHLLHRQ----------GDEALAVWSSMEKASIKPDA-ITFVLIISAYRYT 552 (812)
Q Consensus 487 g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~----------~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~ 552 (812)
...++|.+.++++.. .+...|+.--..+...|+ ++++++.++++.+ ..|.. .+|..-..++.+
T Consensus 43 ~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~--~~pK~y~aW~hR~w~l~~- 119 (567)
T 1dce_A 43 ELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLR--VNPKSYGTWHHRCWLLSR- 119 (567)
T ss_dssp CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHT-
T ss_pred CCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHH-
Confidence 344677888877664 455778877777777777 8999999999998 67766 556655556666
Q ss_pred CCc--hHHHHHHHHHHhhhhcCccC-CcchHHHHHHHHhhcC-ChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhc----
Q 040319 553 NLN--LVDSCRKLFLSMKTIYNIEP-TSEHYASLVSVLGYWG-FLEEAEETINNMP-FQP-KVSVWRALLDSCRIR---- 622 (812)
Q Consensus 553 ~~g--~~~~a~~~~~~m~~~~~~~p-~~~~y~~li~~l~~~g-~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~---- 622 (812)
.| +++++.+.++.+.+ +.| +...|+.-..++.+.| .+++|++.++++. ..| |...|......+...
T Consensus 120 -l~~~~~~~el~~~~k~l~---~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~ 195 (567)
T 1dce_A 120 -LPEPNWARELELCARFLE---ADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQP 195 (567)
T ss_dssp -CSSCCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCC
T ss_pred -cccccHHHHHHHHHHHHh---hccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccc
Confidence 77 77999999999987 344 4667888888888889 8999999999876 556 788999988887663
Q ss_pred ----------CCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCCcch
Q 040319 623 ----------LNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWHN 661 (812)
Q Consensus 623 ----------~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~ 661 (812)
+.++++...++++++++|+|..+|..+.+++.+.|+.++
T Consensus 196 ~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 196 DSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 557899999999999999999999999999999999665
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=97.88 E-value=0.00017 Score=73.56 Aligned_cols=211 Identities=10% Similarity=0.033 Sum_probs=150.1
Q ss_pred chHHHHHHHHHHHHhCCCCchhHHHHHHHHhhhcC-CHHHHHHHHccCCC---CChhHHHHHHHHHHhc-C-ChHHHHHH
Q 040319 453 FHEMGKQIHSYALKTGFSSDLGVANSMVSMYFKCC-NMSNAIKAFNKMPS---HDIVSWNGLIAGHLLH-R-QGDEALAV 526 (812)
Q Consensus 453 ~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g-~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~-g-~~~~A~~l 526 (812)
..++|..+.+.++..+. -+..+|+.--..+...| .+++++..++.+.. ++..+|+.-...+... + ++++++++
T Consensus 69 ~se~AL~lt~~~L~~nP-~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~ 147 (349)
T 3q7a_A 69 KSERALELTEIIVRMNP-AHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEY 147 (349)
T ss_dssp CSHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHH
T ss_pred CCHHHHHHHHHHHHhCc-hhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHH
Confidence 34567888888887652 35566777666677778 59999999998765 6678898887777776 7 89999999
Q ss_pred HHHHHHCCCCCCH-HHHHHHHHHhcCCCCchHH--------HHHHHHHHhhhhcCccC-CcchHHHHHHHHhhcCC----
Q 040319 527 WSSMEKASIKPDA-ITFVLIISAYRYTNLNLVD--------SCRKLFLSMKTIYNIEP-TSEHYASLVSVLGYWGF---- 592 (812)
Q Consensus 527 ~~~m~~~g~~pd~-~t~~~ll~a~~~~~~g~~~--------~a~~~~~~m~~~~~~~p-~~~~y~~li~~l~~~g~---- 592 (812)
++++++ ..|.. ..+..-.-...+ .|..+ +++++++.+.+. .| +...|+....++.+.|+
T Consensus 148 ~~k~L~--~dpkNy~AW~~R~wvl~~--l~~~~~~~~~~~~eELe~~~k~I~~---dp~N~SAW~~R~~lL~~l~~~~~~ 220 (349)
T 3q7a_A 148 IHGSLL--PDPKNYHTWAYLHWLYSH--FSTLGRISEAQWGSELDWCNEMLRV---DGRNNSAWGWRWYLRVSRPGAETS 220 (349)
T ss_dssp HHHHTS--SCTTCHHHHHHHHHHHHH--HHHTTCCCHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHTTSTTCCCC
T ss_pred HHHHHH--hCCCCHHHHHHHHHHHHH--hccccccchhhHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhccccccc
Confidence 999998 66654 455443333333 44444 899999988862 34 46778888888888876
Q ss_pred ---hHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCH--------------------HHHHHHHHHHHccC------CC
Q 040319 593 ---LEEAEETINNMP-FQP-KVSVWRALLDSCRIRLNT--------------------TIGKRVAKHILAME------PQ 641 (812)
Q Consensus 593 ---~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~--------------------~~a~~~~~~~~~~~------p~ 641 (812)
++++++.++++. ..| |...|.-+-..+...|+. ......+..+.... +.
T Consensus 221 ~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (349)
T 3q7a_A 221 SRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLP 300 (349)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSC
T ss_pred hHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCC
Confidence 689999988865 556 788998888777766543 22222222222222 35
Q ss_pred CCchHHHHHhhhhhCCCcchHHHHHHHHHh
Q 040319 642 DPATYILVSNLYSSSGRWHNSELVREDMRE 671 (812)
Q Consensus 642 ~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 671 (812)
.+.+...|+++|...|+.++|.++++.+.+
T Consensus 301 s~~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 301 VPLALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 566788999999999999999999999864
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.88 E-value=4.7e-05 Score=66.10 Aligned_cols=61 Identities=8% Similarity=0.076 Sum_probs=43.8
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcCCCCchHHHHHHHHHHhhh
Q 040319 505 VSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDA-ITFVLIISAYRYTNLNLVDSCRKLFLSMKT 569 (812)
Q Consensus 505 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~ 569 (812)
..|..+...|.+.|++++|++.|++.++ +.|+. ..+..+..++.. .|++++|++.|+...+
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~--~~p~~~~~~~nlg~~~~~--~~~~~~A~~~~~~al~ 70 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIE--LDPSNITFYNNKAAVYFE--EKKFAECVQFCEKAVE 70 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHhHHHHHHH--hhhHHHHHHHHHHHHH
Confidence 4566677777788888888888888877 56665 455666666767 7777777777776654
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=97.87 E-value=6.5e-05 Score=77.95 Aligned_cols=118 Identities=14% Similarity=0.075 Sum_probs=80.8
Q ss_pred chhHHHHHHHHhhhcCCHHHHHHHHccCCC--CC----------------hhHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 040319 472 DLGVANSMVSMYFKCCNMSNAIKAFNKMPS--HD----------------IVSWNGLIAGHLLHRQGDEALAVWSSMEKA 533 (812)
Q Consensus 472 ~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~--~~----------------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 533 (812)
+...+..+...|.+.|++++|...|++... |+ ...|..+...|.+.|++++|+..|++.++
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~- 224 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE- 224 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-
Confidence 566788899999999999999999987654 33 36778888888888888888888888888
Q ss_pred CCCCCH-HHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCC-cchHHHHHHHHhhcCChHHH
Q 040319 534 SIKPDA-ITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPT-SEHYASLVSVLGYWGFLEEA 596 (812)
Q Consensus 534 g~~pd~-~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g~~~~A 596 (812)
+.|+. ..+..+..++.. .|++++|...|+...+ +.|+ ...+..+..++.+.|+.++|
T Consensus 225 -~~p~~~~a~~~lg~~~~~--~g~~~~A~~~~~~al~---l~P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 225 -LDSNNEKGLSRRGEAHLA--VNDFELARADFQKVLQ---LYPNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp -HCTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHH---HCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred -hCCCcHHHHHHHHHHHHH--CCCHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 55654 555555556666 6777777777766654 2232 33444444444444444444
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=97.86 E-value=2.8e-05 Score=67.49 Aligned_cols=95 Identities=6% Similarity=0.038 Sum_probs=81.4
Q ss_pred cchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCC-------CchHH
Q 040319 577 SEHYASLVSVLGYWGFLEEAEETINNMP-FQP-KVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQD-------PATYI 647 (812)
Q Consensus 577 ~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~-------~~~~~ 647 (812)
...|..+...+...|++++|...+++.. ..| +..+|..+...+...|+.+.|...+++++++.|++ +..+.
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 3456777888888999999999888754 334 67788888888999999999999999999998876 77899
Q ss_pred HHHhhhhhCCCcchHHHHHHHHHh
Q 040319 648 LVSNLYSSSGRWHNSELVREDMRE 671 (812)
Q Consensus 648 ~l~~~y~~~g~~~~a~~~~~~m~~ 671 (812)
.++.+|...|++++|.+.+++..+
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHH
Confidence 999999999999999999998765
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=97.83 E-value=5.6e-05 Score=76.22 Aligned_cols=101 Identities=7% Similarity=-0.144 Sum_probs=59.3
Q ss_pred HHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccC-CcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHH
Q 040319 540 ITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEP-TSEHYASLVSVLGYWGFLEEAEETINNMP-FQP-KVSVWRALL 616 (812)
Q Consensus 540 ~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll 616 (812)
..+..+...+.. .|++++|...|+...+ ..| +...|..+..+|.+.|++++|++.+++.. ..| +...|..+.
T Consensus 5 ~~~~~~g~~~~~--~g~~~~A~~~~~~al~---~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 79 (281)
T 2c2l_A 5 QELKEQGNRLFV--GRKYPEAAACYGRAIT---RNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 79 (281)
T ss_dssp HHHHHHHHHHHH--TTCHHHHHHHHHHHHH---HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHH--cCCHHHHHHHHHHHHH---hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 444455555555 6666666666666654 234 35556666666666666666666666533 444 345566666
Q ss_pred HHHHhcCCHHHHHHHHHHHHccCCCCCch
Q 040319 617 DSCRIRLNTTIGKRVAKHILAMEPQDPAT 645 (812)
Q Consensus 617 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 645 (812)
.++...|+.++|...++++++++|+++..
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~l~p~~~~~ 108 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYSLAKEQRLN 108 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchhh
Confidence 66666666666666666666666655433
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.80 E-value=8.2e-05 Score=80.35 Aligned_cols=187 Identities=8% Similarity=-0.101 Sum_probs=131.0
Q ss_pred HhhhcCCHHHHHHHHccCCC--CC------------------hhHHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCCHH
Q 040319 482 MYFKCCNMSNAIKAFNKMPS--HD------------------IVSWNGLIAGHLLHRQGDEALAVWSSMEKA-SIKPDAI 540 (812)
Q Consensus 482 ~y~k~g~~~~A~~~f~~~~~--~~------------------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~pd~~ 540 (812)
.+.+.|++++|.+.|..+.+ |+ ..++..|+..|...|++++|.+.+.++... +..++..
T Consensus 13 ~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~ 92 (434)
T 4b4t_Q 13 RLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSK 92 (434)
T ss_dssp HHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHH
T ss_pred HHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchH
Confidence 35566777777777665432 11 124677889999999999999999887652 1112221
Q ss_pred ---HHHHHHH-HhcCCCCchHHHHHHHHHHhhhhc---CccC-CcchHHHHHHHHhhcCChHHHHHHHHhCC-------C
Q 040319 541 ---TFVLIIS-AYRYTNLNLVDSCRKLFLSMKTIY---NIEP-TSEHYASLVSVLGYWGFLEEAEETINNMP-------F 605 (812)
Q Consensus 541 ---t~~~ll~-a~~~~~~g~~~~a~~~~~~m~~~~---~~~p-~~~~y~~li~~l~~~g~~~~A~~~~~~m~-------~ 605 (812)
.....+. .+.. .|..+++.++++...... +..+ ....+..++.+|...|++++|..++++.. -
T Consensus 93 ~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 93 TVKVLKTLIEKFEQV--PDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHCSC--CSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 2222333 3444 789999999988765421 2222 24577889999999999999999988743 1
Q ss_pred CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCC---C----CchHHHHHhhhhhCCCcchHHHHHHHHH
Q 040319 606 QPK-VSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQ---D----PATYILVSNLYSSSGRWHNSELVREDMR 670 (812)
Q Consensus 606 ~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~---~----~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 670 (812)
+|. ..++..++..|...|++++|..++++++.+.|. + ...+..++.+|...|++++|...+...-
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 232 457777888899999999999999999876432 1 2456788899999999999988776653
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.77 E-value=3.7e-05 Score=68.35 Aligned_cols=117 Identities=13% Similarity=-0.027 Sum_probs=77.8
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccC-CcchHHHH
Q 040319 505 VSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDAITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEP-TSEHYASL 583 (812)
Q Consensus 505 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~l 583 (812)
..|......+...|++++|+..|++.++ +.|+...- .+ ....| +...|..+
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~--l~p~~~~~----~a----------------------~~~~~~~a~a~~n~ 63 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAME--ISHTMPPE----EA----------------------FDHAGFDAFCHAGL 63 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHH--HHTTSCTT----SC----------------------CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHh--hCCCCcch----hh----------------------hhhccchHHHHHHH
Confidence 3455666777778888888888888887 66651000 00 00000 11245555
Q ss_pred HHHHhhcCChHHHHHHHHhCC--------CCCC-HHHH----HHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHH
Q 040319 584 VSVLGYWGFLEEAEETINNMP--------FQPK-VSVW----RALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILV 649 (812)
Q Consensus 584 i~~l~~~g~~~~A~~~~~~m~--------~~p~-~~~~----~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 649 (812)
..++.+.|++++|+..+++.. +.|+ ...| .....++...|++++|...++++++++|+|.+.+.-+
T Consensus 64 g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~ 142 (159)
T 2hr2_A 64 AEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGK 142 (159)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 555666666666555555432 3785 5688 8999999999999999999999999999988765544
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.77 E-value=0.00013 Score=69.01 Aligned_cols=95 Identities=8% Similarity=-0.086 Sum_probs=80.7
Q ss_pred cchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-C----------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHcc
Q 040319 577 SEHYASLVSVLGYWGFLEEAEETINNMP-FQP-K----------------VSVWRALLDSCRIRLNTTIGKRVAKHILAM 638 (812)
Q Consensus 577 ~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p-~----------------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 638 (812)
...+..+...+.+.|++++|++.+++.. ..| + ..+|..+..++...|+++.|...+++++++
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 117 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI 117 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 4456677778888888888888887743 222 2 267888888899999999999999999999
Q ss_pred CCCCCchHHHHHhhhhhCCCcchHHHHHHHHHh
Q 040319 639 EPQDPATYILVSNLYSSSGRWHNSELVREDMRE 671 (812)
Q Consensus 639 ~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 671 (812)
+|+++.++..++.+|...|++++|.+.+++..+
T Consensus 118 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 150 (198)
T 2fbn_A 118 DKNNVKALYKLGVANMYFGFLEEAKENLYKAAS 150 (198)
T ss_dssp STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 999999999999999999999999999998754
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.77 E-value=4.2e-05 Score=64.27 Aligned_cols=93 Identities=11% Similarity=-0.033 Sum_probs=79.3
Q ss_pred CcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCC------CchHH
Q 040319 576 TSEHYASLVSVLGYWGFLEEAEETINNMP-FQP-KVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQD------PATYI 647 (812)
Q Consensus 576 ~~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~~ 647 (812)
+...|..+...+.+.|++++|++.+++.. ..| +..+|..+..++...|+.+.|...++++++++|++ ...+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 45567778888999999999999988854 445 67889899999999999999999999999999998 77888
Q ss_pred HHHhhhhhCCCcchHHHHHHH
Q 040319 648 LVSNLYSSSGRWHNSELVRED 668 (812)
Q Consensus 648 ~l~~~y~~~g~~~~a~~~~~~ 668 (812)
.++.++...|++++|.+.+++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHHH
Confidence 999999999998888765543
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=97.76 E-value=6e-05 Score=66.20 Aligned_cols=64 Identities=8% Similarity=-0.135 Sum_probs=41.2
Q ss_pred chHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCC
Q 040319 578 EHYASLVSVLGYWGFLEEAEETINNMP-FQP-KVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQ 641 (812)
Q Consensus 578 ~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~ 641 (812)
..|..+..++...|++++|...+++.. ..| +...|..+..++...|+.+.|...+++++++.|+
T Consensus 44 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 44 VYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChh
Confidence 344444555555555555555554432 233 4667777777788888888888888888888776
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.73 E-value=6.5e-05 Score=64.55 Aligned_cols=67 Identities=21% Similarity=0.091 Sum_probs=39.7
Q ss_pred cchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCC
Q 040319 577 SEHYASLVSVLGYWGFLEEAEETINNMP-FQP-KVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDP 643 (812)
Q Consensus 577 ~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~ 643 (812)
...|..+..++.+.|++++|+..+++.. ..| +...|..+..++...|+.++|...++++++++|+++
T Consensus 51 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 51 EEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCC
Confidence 3444444555555555555555555533 344 466777777778888888888888888888888754
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.69 E-value=3.8e-05 Score=65.56 Aligned_cols=104 Identities=14% Similarity=0.009 Sum_probs=71.2
Q ss_pred CchHHHHHHHHHHhhhhcCccC-CcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHH
Q 040319 554 LNLVDSCRKLFLSMKTIYNIEP-TSEHYASLVSVLGYWGFLEEAEETINNMP-FQP-KVSVWRALLDSCRIRLNTTIGKR 630 (812)
Q Consensus 554 ~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~ 630 (812)
.|++++|+..|++..+...-.| +...|..+..+|.+.|++++|++.+++.. ..| +..++..+..++...|+.++|..
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 5667777777777665100023 25667778888888888888888888754 445 57788888888999999999999
Q ss_pred HHHHHHccCCCCCchHHHHHhhhhhCC
Q 040319 631 VAKHILAMEPQDPATYILVSNLYSSSG 657 (812)
Q Consensus 631 ~~~~~~~~~p~~~~~~~~l~~~y~~~g 657 (812)
.++++++..|+++........+..-.+
T Consensus 83 ~~~~al~~~p~~~~~~~~~~ai~~~~~ 109 (117)
T 3k9i_A 83 LLLKIIAETSDDETIQSYKQAILFYAD 109 (117)
T ss_dssp HHHHHHHHHCCCHHHHHTHHHHHHHTT
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHHH
Confidence 999999999988766544433333333
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.67 E-value=9.3e-05 Score=67.38 Aligned_cols=129 Identities=12% Similarity=0.005 Sum_probs=87.5
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCCcchHHHHH
Q 040319 505 VSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDAITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYASLV 584 (812)
Q Consensus 505 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li 584 (812)
..|......+.+.|++++|+..|++.++ +.|+.. .-.. ....+. ..+. +.....|..+.
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~--~~~~~~-------~~~~--~~~~~~-----~~~~-----~~~~~~~~nla 70 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDALT--RLDTLI-------LREK--PGEPEW-----VELD-----RKNIPLYANMS 70 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHHHHH-------HTSC--TTSHHH-----HHHH-----HTHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH--HHHHhc-------ccCC--CCHHHH-----HHHH-----HHHHHHHHHHH
Confidence 4566777788888888888888888776 211000 0000 010000 0000 11245677788
Q ss_pred HHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCC-chHHHHHhhhh
Q 040319 585 SVLGYWGFLEEAEETINNMP-FQP-KVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDP-ATYILVSNLYS 654 (812)
Q Consensus 585 ~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~-~~~~~l~~~y~ 654 (812)
.+|.+.|++++|+..+++.. +.| +...|..+..++...|+++.|...++++++++|+++ .....+..+..
T Consensus 71 ~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~ 143 (162)
T 3rkv_A 71 QCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTE 143 (162)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred HHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 88888888888888888754 455 577888999999999999999999999999999987 55555555443
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=97.66 E-value=0.00093 Score=67.87 Aligned_cols=209 Identities=9% Similarity=-0.056 Sum_probs=138.3
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHhhhcCC----------HHHHHHHHccCCC---CChhHHHHHHHHHHhcCC--
Q 040319 455 EMGKQIHSYALKTGFSSDLGVANSMVSMYFKCCN----------MSNAIKAFNKMPS---HDIVSWNGLIAGHLLHRQ-- 519 (812)
Q Consensus 455 ~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~----------~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~-- 519 (812)
++|..+.+.++..+. .+..+|+.--..+...|. +++++.+++.+.. ++..+|+.-...+...|+
T Consensus 47 ~eaL~~t~~~L~~nP-~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~ 125 (331)
T 3dss_A 47 ESVLELTSQILGANP-DFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPN 125 (331)
T ss_dssp HHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCC
T ss_pred HHHHHHHHHHHHHCc-hhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCccc
Confidence 466777777776432 133344432222222222 5778888877654 677888888877878784
Q ss_pred hHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcCCCCch-HHHHHHHHHHhhhhcCccC-CcchHHHHHHHHhhc------
Q 040319 520 GDEALAVWSSMEKASIKPDA-ITFVLIISAYRYTNLNL-VDSCRKLFLSMKTIYNIEP-TSEHYASLVSVLGYW------ 590 (812)
Q Consensus 520 ~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~~~g~-~~~a~~~~~~m~~~~~~~p-~~~~y~~li~~l~~~------ 590 (812)
+++++++++++.+ ..|.. ..|+.---.+.. .|. +++++++++.+.+. .| +...|+....++.+.
T Consensus 126 ~~~EL~~~~k~l~--~dprNy~AW~~R~~vl~~--l~~~~~eel~~~~~~I~~---~p~N~SAW~~R~~ll~~l~~~~~~ 198 (331)
T 3dss_A 126 WARELELCARFLE--ADERNFHCWDYRRFVAAQ--AAVAPAEELAFTDSLITR---NFSNYSSWHYRSCLLPQLHPQPDS 198 (331)
T ss_dssp HHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHH--TTCCHHHHHHHHHHHHHH---CSCCHHHHHHHHHHHHHHSCCC--
T ss_pred HHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHH--hCcCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHhhhcccc
Confidence 7899999999998 56654 455544444445 666 68899999988862 34 456676666666554
Q ss_pred --------CChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHccCCCCCchHHHH
Q 040319 591 --------GFLEEAEETINNMP-FQP-KVSVWRALLDSCRIR-----------LNTTIGKRVAKHILAMEPQDPATYILV 649 (812)
Q Consensus 591 --------g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~-----------~~~~~a~~~~~~~~~~~p~~~~~~~~l 649 (812)
+.++++++.+++.. ..| |...|+-+-..+... +.++.+...++++++++|++.-.+..+
T Consensus 199 ~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l~~~ 278 (331)
T 3dss_A 199 GPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCLLTI 278 (331)
T ss_dssp ----CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred ccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchHHHHH
Confidence 45788999888855 556 788887666665544 457889999999999999875554444
Q ss_pred Hhhh---hhCCCcchHHHHHHHHHh
Q 040319 650 SNLY---SSSGRWHNSELVREDMRE 671 (812)
Q Consensus 650 ~~~y---~~~g~~~~a~~~~~~m~~ 671 (812)
+.+. ...|..+++...+.++.+
T Consensus 279 ~~~~~~~~~~~~~~~~~~~l~~l~~ 303 (331)
T 3dss_A 279 ILLMRALDPLLYEKETLQYFSTLKA 303 (331)
T ss_dssp HHHHHHHCTTTTHHHHHHHHHHHHH
T ss_pred HHHHHhhcccccHHHHHHHHHHHHH
Confidence 3322 235666677777777654
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.65 E-value=0.00025 Score=61.34 Aligned_cols=74 Identities=14% Similarity=-0.041 Sum_probs=48.6
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHhCC-CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhh
Q 040319 579 HYASLVSVLGYWGFLEEAEETINNMP-FQPK----VSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNL 652 (812)
Q Consensus 579 ~y~~li~~l~~~g~~~~A~~~~~~m~-~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 652 (812)
.+..+..++.+.|++++|.+.+++.. ..|+ ..++..+..++...|+.+.|...++++++..|+++........+
T Consensus 41 ~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l 119 (129)
T 2xev_A 41 ALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERL 119 (129)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 44555556666666666666665533 2332 45566677778888888888888888888888876555444433
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.63 E-value=6e-05 Score=68.15 Aligned_cols=92 Identities=14% Similarity=0.116 Sum_probs=60.3
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHhCC----CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCC------CCc
Q 040319 579 HYASLVSVLGYWGFLEEAEETINNMP----FQPK----VSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQ------DPA 644 (812)
Q Consensus 579 ~y~~li~~l~~~g~~~~A~~~~~~m~----~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~------~~~ 644 (812)
.+..+...+...|++++|.+.+++.. ..++ ..++..+...+...|+.+.|...+++++++.+. .+.
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 44555556666666666666655532 0111 345666666777778888888888777765322 234
Q ss_pred hHHHHHhhhhhCCCcchHHHHHHHHH
Q 040319 645 TYILVSNLYSSSGRWHNSELVREDMR 670 (812)
Q Consensus 645 ~~~~l~~~y~~~g~~~~a~~~~~~m~ 670 (812)
.+..++.+|...|++++|.+.+++..
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~ 156 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHL 156 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 67788889999999999988887764
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.61 E-value=0.00017 Score=57.84 Aligned_cols=81 Identities=16% Similarity=0.186 Sum_probs=67.4
Q ss_pred cchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhh
Q 040319 577 SEHYASLVSVLGYWGFLEEAEETINNMP-FQP-KVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYS 654 (812)
Q Consensus 577 ~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~ 654 (812)
...+..+...+.+.|++++|+..+++.. ..| +..+|..+...+...|+.+.|...++++++++|+++..+..++.+|.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 4567777888888888888888888754 344 57788888888999999999999999999999999999999998887
Q ss_pred hCC
Q 040319 655 SSG 657 (812)
Q Consensus 655 ~~g 657 (812)
..|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 654
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=97.60 E-value=9.4e-05 Score=64.00 Aligned_cols=115 Identities=11% Similarity=0.040 Sum_probs=68.3
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCCcchHHHH
Q 040319 505 VSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPD-AITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYASL 583 (812)
Q Consensus 505 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~l 583 (812)
..|..+...+...|++++|+..|++..+ ..|+ ...+..+...+.. .|++++|..+|+...+.. |+
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~la~~~~~--~~~~~~A~~~~~~~~~~~---~~------- 70 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKE--LDPTNMTYITNQAAVYFE--KGDYNKCRELCEKAIEVG---RE------- 70 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHH--HTCHHHHHHHHHHHHHHH---HH-------
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHh--cCCccHHHHHHHHHHHHH--hccHHHHHHHHHHHHhhc---cc-------
Confidence 4566666667777777777777777666 3343 2344444445555 555666665555554311 10
Q ss_pred HHHHhhcCChHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhh
Q 040319 584 VSVLGYWGFLEEAEETINNMPFQPK----VSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSS 655 (812)
Q Consensus 584 i~~l~~~g~~~~A~~~~~~m~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~ 655 (812)
..++ ..+|..+...+...|+.+.|...+++++++.| ++.....+..++..
T Consensus 71 ---------------------~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~ 124 (131)
T 1elr_A 71 ---------------------NREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKI 124 (131)
T ss_dssp ---------------------STTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred ---------------------cchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHH
Confidence 0112 45666677777777888888888888888777 46666666555443
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00017 Score=59.41 Aligned_cols=64 Identities=16% Similarity=0.100 Sum_probs=59.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCCcchHHHHHHHHHh
Q 040319 608 KVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWHNSELVREDMRE 671 (812)
Q Consensus 608 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 671 (812)
+...|..+...+...|+++.|+..++++++++|+++.+|..++.+|...|++++|.+.+++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 6778999999999999999999999999999999999999999999999999999999988743
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00011 Score=77.21 Aligned_cols=137 Identities=7% Similarity=-0.041 Sum_probs=105.3
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccC-CcchHHH
Q 040319 504 IVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDAITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEP-TSEHYAS 582 (812)
Q Consensus 504 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~ 582 (812)
...|..+...|.+.|++++|++.|++.++ +.|+.. . .-..+++ . ...| +...|..
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~--~~~~~~----------~--~~~~~~~-------~---~~~~~~~~~~~n 278 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLR--YVEGSR----------A--AAEDADG-------A---KLQPVALSCVLN 278 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHHHHH----------H--HSCHHHH-------G---GGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHH--HhhcCc----------c--ccChHHH-------H---HHHHHHHHHHHH
Confidence 34577788888888999999998888876 222110 0 0001111 0 0122 3567888
Q ss_pred HHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCCcc
Q 040319 583 LVSVLGYWGFLEEAEETINNMP-FQP-KVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWH 660 (812)
Q Consensus 583 li~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~ 660 (812)
+..+|.+.|++++|++.+++.. ..| +...|..+..++...|++++|...++++++++|++...+..++.++...|+.+
T Consensus 279 la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~ 358 (370)
T 1ihg_A 279 IGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQK 358 (370)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998854 566 57788899999999999999999999999999999999999999999998888
Q ss_pred hHHH
Q 040319 661 NSEL 664 (812)
Q Consensus 661 ~a~~ 664 (812)
++.+
T Consensus 359 ~a~k 362 (370)
T 1ihg_A 359 DKEK 362 (370)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7765
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00027 Score=59.03 Aligned_cols=88 Identities=14% Similarity=0.094 Sum_probs=39.6
Q ss_pred HHHHHHhhhcCCHHHHHHHHccCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHhc
Q 040319 477 NSMVSMYFKCCNMSNAIKAFNKMPS---HDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPD---AITFVLIISAYR 550 (812)
Q Consensus 477 ~~Li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd---~~t~~~ll~a~~ 550 (812)
..+...|.+.|++++|...|++..+ .+...|..+...|...|++++|++.|++..+ ..|+ ...+..+..++.
T Consensus 10 ~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~~~l~~~~~ 87 (112)
T 2kck_A 10 YLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVIN--VIEDEYNKDVWAAKADALR 87 (112)
T ss_dssp GGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TSCCTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCcccchHHHHHHHHHHHH
Confidence 3344444444444444444443321 2334444444455555555555555555544 2333 233333444444
Q ss_pred CCCC-chHHHHHHHHHHhh
Q 040319 551 YTNL-NLVDSCRKLFLSMK 568 (812)
Q Consensus 551 ~~~~-g~~~~a~~~~~~m~ 568 (812)
. . |++++|.+.|+...
T Consensus 88 ~--~~~~~~~A~~~~~~~~ 104 (112)
T 2kck_A 88 Y--IEGKEVEAEIAEARAK 104 (112)
T ss_dssp T--CSSCSHHHHHHHHHHG
T ss_pred H--HhCCHHHHHHHHHHHh
Confidence 4 4 44555555444444
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00015 Score=65.31 Aligned_cols=132 Identities=13% Similarity=0.039 Sum_probs=72.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCC-CCH----HHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCC----c
Q 040319 507 WNGLIAGHLLHRQGDEALAVWSSMEKASIK-PDA----ITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPT----S 577 (812)
Q Consensus 507 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-pd~----~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~----~ 577 (812)
+..+...|...|++++|+..+++..+..-. ++. .++..+...+.. .|++++|.++++...+...-.++ .
T Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 12 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIF--LGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 444444555555555555555554431100 111 234444444445 56666666665554431111111 3
Q ss_pred chHHHHHHHHhhcCChHHHHHHHHhCC-------CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCC
Q 040319 578 EHYASLVSVLGYWGFLEEAEETINNMP-------FQP-KVSVWRALLDSCRIRLNTTIGKRVAKHILAMEP 640 (812)
Q Consensus 578 ~~y~~li~~l~~~g~~~~A~~~~~~m~-------~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p 640 (812)
..+..+..++...|++++|.+.+++.. ..+ ...++..+...+...|+.+.|...+++++++..
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 160 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 160 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 455666677777777777777766532 111 134566677778888999999999888887643
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.55 E-value=0.00024 Score=74.57 Aligned_cols=64 Identities=6% Similarity=-0.035 Sum_probs=59.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCCcchHHHHHHHHHh
Q 040319 608 KVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWHNSELVREDMRE 671 (812)
Q Consensus 608 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 671 (812)
+..+|..+..++...|++++|+..++++++++|+++.++..++.+|...|++++|.+.+++..+
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~ 335 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQE 335 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 4568888888999999999999999999999999999999999999999999999999998754
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.53 E-value=0.00011 Score=62.26 Aligned_cols=77 Identities=9% Similarity=0.045 Sum_probs=64.5
Q ss_pred HHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCCcchHHHHHHHHHh
Q 040319 595 EAEETINNMP-FQP-KVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWHNSELVREDMRE 671 (812)
Q Consensus 595 ~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 671 (812)
+|++.+++.. ..| +...|..+...+...|+++.|+..++++++++|+++..+..++.+|...|++++|...+++..+
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3455555532 445 5778888888999999999999999999999999999999999999999999999999988754
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.49 E-value=0.00023 Score=77.22 Aligned_cols=95 Identities=8% Similarity=-0.060 Sum_probs=78.2
Q ss_pred chHHHHHHHHhhcCChHHHHHHHHhCC-CCCC----------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHccCC
Q 040319 578 EHYASLVSVLGYWGFLEEAEETINNMP-FQPK----------------VSVWRALLDSCRIRLNTTIGKRVAKHILAMEP 640 (812)
Q Consensus 578 ~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p~----------------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p 640 (812)
..|..+...|.+.|++++|+..|++.. +.|+ ..+|..+..++...|+++.|+..++++++++|
T Consensus 269 ~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p 348 (457)
T 1kt0_A 269 AIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDS 348 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC
Confidence 345556666666777777776666543 2232 57888899999999999999999999999999
Q ss_pred CCCchHHHHHhhhhhCCCcchHHHHHHHHHhC
Q 040319 641 QDPATYILVSNLYSSSGRWHNSELVREDMREK 672 (812)
Q Consensus 641 ~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 672 (812)
+++.+|..++.+|...|++++|...+++..+.
T Consensus 349 ~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l 380 (457)
T 1kt0_A 349 ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 380 (457)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999998654
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.49 E-value=0.00078 Score=72.52 Aligned_cols=194 Identities=11% Similarity=-0.026 Sum_probs=108.1
Q ss_pred HHHHhcCCHHHHHHHHhcCCCCCC---cee---------------eeHHHHHHHHHcCChhhHHHHHHHhcccCCCCCCh
Q 040319 377 DMLTRCGRMADAEKMFYRWPTDRD---DSI---------------IWTSMICGYARSGKPEHAILLFHQSQSEATVVPDE 438 (812)
Q Consensus 377 ~~y~~~g~~~~A~~~f~~~~~~~~---~~~---------------~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~ 438 (812)
..+.+.|++++|.+.|..+....+ +.. ++..+...|...|++++|.+.+.+.....+..++.
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence 445677777777777766431111 111 13455666677777777777666655411111111
Q ss_pred hhHHHHHHHhcCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHhhhcCCHHHHHHHHccCCC--------CC-hhHHHH
Q 040319 439 IALTSVLGVCGTLGFHEMGKQIHSYALKTGFSSDLGVANSMVSMYFKCCNMSNAIKAFNKMPS--------HD-IVSWNG 509 (812)
Q Consensus 439 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~--------~~-~~~~~~ 509 (812)
.+ ...+.+.+...+...|+.+.|..++..... +. ..++..
T Consensus 92 ~~-------------------------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (434)
T 4b4t_Q 92 KT-------------------------------VKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIK 140 (434)
T ss_dssp HH-------------------------------HHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHH
T ss_pred HH-------------------------------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHH
Confidence 10 011222333344445555555555544321 11 235666
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHC----CCCCCH-HHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCC-----cch
Q 040319 510 LIAGHLLHRQGDEALAVWSSMEKA----SIKPDA-ITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPT-----SEH 579 (812)
Q Consensus 510 li~~~~~~g~~~~A~~l~~~m~~~----g~~pd~-~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~~ 579 (812)
+...|...|++++|..++++.... +-+|.. ..+..+...|.. .|++++|..+++.......-.++ ...
T Consensus 141 la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 218 (434)
T 4b4t_Q 141 LATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHK--LRNLAKSKASLTAARTAANSIYCPTQTVAEL 218 (434)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred HHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHH--hCcHHHHHHHHHHHHHHhhcCCCchHHHHHH
Confidence 777777778888888777776542 112222 345666667777 88888888888766542211121 345
Q ss_pred HHHHHHHHhhcCChHHHHHHHHhC
Q 040319 580 YASLVSVLGYWGFLEEAEETINNM 603 (812)
Q Consensus 580 y~~li~~l~~~g~~~~A~~~~~~m 603 (812)
+..++..+...|++++|...+.+.
T Consensus 219 ~~~~g~~~~~~~~y~~A~~~~~~a 242 (434)
T 4b4t_Q 219 DLMSGILHCEDKDYKTAFSYFFES 242 (434)
T ss_dssp HHHHHHHTTSSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHH
Confidence 677777888888888887766543
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.46 E-value=0.00018 Score=77.99 Aligned_cols=121 Identities=17% Similarity=0.075 Sum_probs=90.3
Q ss_pred CchHHHHHHHHHHhhhhcC--ccCC----cchHHHHHHHHhhcCChHHHHHHHHhCC---------CCCC-HHHHHHHHH
Q 040319 554 LNLVDSCRKLFLSMKTIYN--IEPT----SEHYASLVSVLGYWGFLEEAEETINNMP---------FQPK-VSVWRALLD 617 (812)
Q Consensus 554 ~g~~~~a~~~~~~m~~~~~--~~p~----~~~y~~li~~l~~~g~~~~A~~~~~~m~---------~~p~-~~~~~~ll~ 617 (812)
.|++++|..++++..+... +.|+ ..+++.|..+|...|++++|+.++++.. ..|+ ..+++.|..
T Consensus 322 qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 401 (490)
T 3n71_A 322 EGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGL 401 (490)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 6777777777766544221 2222 4567888888888888888888877643 2343 457888888
Q ss_pred HHHhcCCHHHHHHHHHHHHc-----cCCCCCch---HHHHHhhhhhCCCcchHHHHHHHHHhCCC
Q 040319 618 SCRIRLNTTIGKRVAKHILA-----MEPQDPAT---YILVSNLYSSSGRWHNSELVREDMREKGF 674 (812)
Q Consensus 618 ~~~~~~~~~~a~~~~~~~~~-----~~p~~~~~---~~~l~~~y~~~g~~~~a~~~~~~m~~~g~ 674 (812)
.|..+|++++|+..++++++ +.|++|.+ ...|...+...|++++|..++.++++.-.
T Consensus 402 ~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~ 466 (490)
T 3n71_A 402 TNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAAL 466 (490)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 89999999999999999986 46776544 45788899999999999999999987543
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.45 E-value=4.1e-05 Score=67.89 Aligned_cols=84 Identities=10% Similarity=0.047 Sum_probs=60.0
Q ss_pred hcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHccCCCCCchHHHHHhhhhhC
Q 040319 589 YWGFLEEAEETINNMP-FQP-KVSVWRALLDSCRIRLN----------TTIGKRVAKHILAMEPQDPATYILVSNLYSSS 656 (812)
Q Consensus 589 ~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~ 656 (812)
|.+++++|.+.+++.. ..| +...|..+..++...++ +++|+..++++++++|+++.+|..++++|...
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 3344555555554432 333 44455555555444443 57999999999999999999999999999987
Q ss_pred C-----------CcchHHHHHHHHHhC
Q 040319 657 G-----------RWHNSELVREDMREK 672 (812)
Q Consensus 657 g-----------~~~~a~~~~~~m~~~ 672 (812)
| ++++|.+.+++..+.
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~l 120 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVDE 120 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCcchhhhhccHHHHHHHHHHHHHh
Confidence 5 899999999988653
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.42 E-value=0.00039 Score=56.06 Aligned_cols=69 Identities=14% Similarity=0.005 Sum_probs=59.9
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCCcchHHHHHHHHHhCCC
Q 040319 606 QPKVSVWRALLDSCRIRLN---TTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWHNSELVREDMREKGF 674 (812)
Q Consensus 606 ~p~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~ 674 (812)
++|+..|..+..+....++ .+.|...++++++++|+++.+...+++++.+.|++++|...++++.+...
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p 74 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSND 74 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 3467788888888655544 69999999999999999999999999999999999999999999977544
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00021 Score=74.07 Aligned_cols=112 Identities=5% Similarity=-0.039 Sum_probs=83.1
Q ss_pred HHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCCcchHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 040319 540 ITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLEEAEETINNMPFQPKVSVWRALLDSC 619 (812)
Q Consensus 540 ~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~ 619 (812)
..+..+...+.. .|++++|...|+...+ +.|+.. .+...|+.+++...+.. .+|..+..++
T Consensus 180 ~~~~~~g~~~~~--~g~~~~A~~~y~~Al~---~~p~~~-------~~~~~~~~~~~~~~l~~-------~~~~nla~~~ 240 (338)
T 2if4_A 180 DRRKMDGNSLFK--EEKLEEAMQQYEMAIA---YMGDDF-------MFQLYGKYQDMALAVKN-------PCHLNIAACL 240 (338)
T ss_dssp HHHHHHHHHTCS--SSCCHHHHHHHHHHHH---HSCHHH-------HHTCCHHHHHHHHHHHT-------HHHHHHHHHH
T ss_pred HHHHHHHHHHHh--cCCHHHHHHHHHHHHH---Hhccch-------hhhhcccHHHHHHHHHH-------HHHHHHHHHH
Confidence 445555556666 7777777777777654 223221 12233444444433321 3788888889
Q ss_pred HhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCCcchHHHHHHHHH
Q 040319 620 RIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWHNSELVREDMR 670 (812)
Q Consensus 620 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 670 (812)
...|+++.|...++++++++|+++.+|..++.+|...|++++|.+.+++..
T Consensus 241 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al 291 (338)
T 2if4_A 241 IKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQ 291 (338)
T ss_dssp HTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTT
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999864
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00024 Score=62.94 Aligned_cols=53 Identities=11% Similarity=0.151 Sum_probs=38.1
Q ss_pred hHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHccCCCCCch
Q 040319 593 LEEAEETINNMP-FQP-KVSVWRALLDSCRIR-----------LNTTIGKRVAKHILAMEPQDPAT 645 (812)
Q Consensus 593 ~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~-----------~~~~~a~~~~~~~~~~~p~~~~~ 645 (812)
+++|+..|++.. +.| +..+|..+..+|... |++++|...++++++++|++..+
T Consensus 62 ~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y 127 (158)
T 1zu2_A 62 IQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHY 127 (158)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHH
Confidence 346666666643 455 355677777777665 58999999999999999987543
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00097 Score=72.23 Aligned_cols=115 Identities=10% Similarity=-0.037 Sum_probs=87.6
Q ss_pred HHhhcCChHHHHHHHHhCC------C---CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHcc-----CCCC---CchHH
Q 040319 586 VLGYWGFLEEAEETINNMP------F---QPK-VSVWRALLDSCRIRLNTTIGKRVAKHILAM-----EPQD---PATYI 647 (812)
Q Consensus 586 ~l~~~g~~~~A~~~~~~m~------~---~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~p~~---~~~~~ 647 (812)
.+...|++++|+.++++.. + .|+ ..+++.|..+|...|++++|+..+++++++ .|++ ...+.
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 3557899999999987642 2 333 458888999999999999999999999874 4554 45678
Q ss_pred HHHhhhhhCCCcchHHHHHHHHHhCCCCCCCceeEEEECCEEEEEeeCCCCCcchHHHHHHHHHHHHHHHH
Q 040319 648 LVSNLYSSSGRWHNSELVREDMREKGFRKHPSRSWIIHQNKVHSFYVRDKSHPREKDIYSGLEILILECLK 718 (812)
Q Consensus 648 ~l~~~y~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~~~~ 718 (812)
.|+.+|..+|++++|..++++..+.-. + .-...||...++...+.+...+++.
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~-~-----------------~lG~~Hp~~~~~~~~l~~~~~e~~~ 450 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILL-V-----------------THGPSHPITKDLEAMRMQTEMELRM 450 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHH-H-----------------HTCTTSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHH-H-----------------HhCCCChHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999888754211 0 1124799999988888777665543
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.19 E-value=0.0081 Score=61.19 Aligned_cols=138 Identities=11% Similarity=0.003 Sum_probs=63.7
Q ss_pred CChhHHHHHHHHHH--hcCC---hHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcC------CCCchHHHHHHHHHHhhh
Q 040319 502 HDIVSWNGLIAGHL--LHRQ---GDEALAVWSSMEKASIKPDA-ITFVLIISAYRY------TNLNLVDSCRKLFLSMKT 569 (812)
Q Consensus 502 ~~~~~~~~li~~~~--~~g~---~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~------~~~g~~~~a~~~~~~m~~ 569 (812)
.+...|...+.+.. ..+. ..+|+.+|++.++ ..|+. ..+..+.-++.. ............++....
T Consensus 192 ~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~--lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a 269 (372)
T 3ly7_A 192 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ--SSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT 269 (372)
T ss_dssp SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHh
Confidence 45666766665543 3333 4789999999999 88986 333332222210 000011111111111111
Q ss_pred hcCccCCcchHHHHHHHHhhcCChHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCC
Q 040319 570 IYNIEPTSEHYASLVSVLGYWGFLEEAEETINNMP-FQPKVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQ 641 (812)
Q Consensus 570 ~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~ 641 (812)
......+...|..+.-.+.-.|++++|...++++. +.|+...|..+...+...|+.++|...+++++.++|.
T Consensus 270 ~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~ 342 (372)
T 3ly7_A 270 LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPG 342 (372)
T ss_dssp CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCS
T ss_pred cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 01112234444444444444455555555555543 3444444444444444555555555555555555554
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.18 E-value=0.0011 Score=70.80 Aligned_cols=112 Identities=10% Similarity=-0.065 Sum_probs=75.7
Q ss_pred hhcCChHHHHHHHHhCC------CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHcc-----CCCC---CchHHHH
Q 040319 588 GYWGFLEEAEETINNMP------FQPK----VSVWRALLDSCRIRLNTTIGKRVAKHILAM-----EPQD---PATYILV 649 (812)
Q Consensus 588 ~~~g~~~~A~~~~~~m~------~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~p~~---~~~~~~l 649 (812)
.+.|++++|++++++.. +.|+ ..+++.|..+|...|++++|+..+++++++ .|++ ...+..|
T Consensus 298 ~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nL 377 (429)
T 3qwp_A 298 KAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKV 377 (429)
T ss_dssp HHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHH
T ss_pred HhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHH
Confidence 34455555555554421 2222 346667777777778888888777777753 3444 4457889
Q ss_pred HhhhhhCCCcchHHHHHHHHHhCCCCCCCceeEEEECCEEEEEeeCCCCCcchHHHHHHHHHHHHHHH
Q 040319 650 SNLYSSSGRWHNSELVREDMREKGFRKHPSRSWIIHQNKVHSFYVRDKSHPREKDIYSGLEILILECL 717 (812)
Q Consensus 650 ~~~y~~~g~~~~a~~~~~~m~~~g~~~~~~~s~~~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~~~ 717 (812)
+.+|...|++++|..++++..+.-. + .-...||...+++..|.+...+|+
T Consensus 378 a~~~~~~g~~~eA~~~~~~Al~i~~-~-----------------~lG~~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 378 GKLQLHQGMFPQAMKNLRLAFDIMR-V-----------------THGREHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHH-H-----------------HTCTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHH-H-----------------hcCCCChHHHHHHHHHHHHHHHHh
Confidence 9999999999999999888754210 0 113479999999999988887775
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.12 E-value=0.0009 Score=55.80 Aligned_cols=66 Identities=9% Similarity=0.026 Sum_probs=60.5
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCCcchHHHHHHHHHhC
Q 040319 607 PKVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWHNSELVREDMREK 672 (812)
Q Consensus 607 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 672 (812)
++...|..+...+...|+++.|...++++++++|+++..+..++.+|...|++++|.+.+++..+.
T Consensus 2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 345678888889999999999999999999999999999999999999999999999999988653
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=96.98 E-value=0.0048 Score=54.06 Aligned_cols=113 Identities=8% Similarity=-0.092 Sum_probs=83.7
Q ss_pred CchHHHHHHHHHHhhhhcCccCCcchHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHH
Q 040319 554 LNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLEEAEETINNMPFQPKVSVWRALLDSCRI----RLNTTIGK 629 (812)
Q Consensus 554 ~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~----~~~~~~a~ 629 (812)
.+++++|.++|+...+ .| +.... |..+|...+.+++|++.+++.-...++..+..|...|.. .+|.++|.
T Consensus 8 ~~d~~~A~~~~~~aa~-~g---~~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 8 KKDLKKAIQYYVKACE-LN---EMFGC--LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHHH-TT---CTTHH--HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred ccCHHHHHHHHHHHHc-CC---CHhhh--HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 3467777777777765 33 22223 667777777777788888775434566677777777776 78889999
Q ss_pred HHHHHHHccCCCCCchHHHHHhhhhh----CCCcchHHHHHHHHHhCCC
Q 040319 630 RVAKHILAMEPQDPATYILVSNLYSS----SGRWHNSELVREDMREKGF 674 (812)
Q Consensus 630 ~~~~~~~~~~p~~~~~~~~l~~~y~~----~g~~~~a~~~~~~m~~~g~ 674 (812)
..++++.+. .++.++..|+.+|.. .+++++|.+++++.-+.|.
T Consensus 82 ~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 82 QYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 999888876 467888899999998 8899999999988877654
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=96.96 E-value=0.0038 Score=69.35 Aligned_cols=150 Identities=9% Similarity=-0.002 Sum_probs=119.2
Q ss_pred HhcCC-hHHHHHHHHHHHHCCCCCCHHHH-HHHHHHhcCCCCch----------HHHHHHHHHHhhhhcCccCC-cchHH
Q 040319 515 LLHRQ-GDEALAVWSSMEKASIKPDAITF-VLIISAYRYTNLNL----------VDSCRKLFLSMKTIYNIEPT-SEHYA 581 (812)
Q Consensus 515 ~~~g~-~~~A~~l~~~m~~~g~~pd~~t~-~~ll~a~~~~~~g~----------~~~a~~~~~~m~~~~~~~p~-~~~y~ 581 (812)
.+.|. .++|++.++++++ +.|+..|. +.--.++.. .|. ++++.+.++.+.+ ..|. ...|.
T Consensus 39 ~~~~~~~eeal~~~~~~l~--~nP~~~taW~~R~~~l~~--l~~~~~~~~~~~~~~~eL~~~~~~l~---~~pK~y~aW~ 111 (567)
T 1dce_A 39 RQAGELDESVLELTSQILG--ANPDFATLWNCRREVLQH--LETEKSPEESAALVKAELGFLESCLR---VNPKSYGTWH 111 (567)
T ss_dssp HHTTCCSHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHH--HHTTSCHHHHHHHHHHHHHHHHHHHH---HCTTCHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHH--HCchhHHHHHHHHHHHHh--cccccchhhhhhhHHHHHHHHHHHHH---hCCCCHHHHH
Confidence 34444 4789999999999 88988653 333333334 455 8999999999987 3454 66788
Q ss_pred HHHHHHhhcC--ChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcC-CHHHHHHHHHHHHccCCCCCchHHHHHhhhhhC
Q 040319 582 SLVSVLGYWG--FLEEAEETINNMP-FQP-KVSVWRALLDSCRIRL-NTTIGKRVAKHILAMEPQDPATYILVSNLYSSS 656 (812)
Q Consensus 582 ~li~~l~~~g--~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~ 656 (812)
.-.-++.+.| ++++|+++++++. ..| |..+|+.-.......| ..+.+...++++++.+|+|..+|...+.++.+.
T Consensus 112 hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l 191 (567)
T 1dce_A 112 HRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQL 191 (567)
T ss_dssp HHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhh
Confidence 8888889999 6799999999976 555 7889999988888888 899999999999999999999999999998874
Q ss_pred --------------CCcchHHHHHHHHHh
Q 040319 657 --------------GRWHNSELVREDMRE 671 (812)
Q Consensus 657 --------------g~~~~a~~~~~~m~~ 671 (812)
++++++.+..++.-.
T Consensus 192 ~~~~~~~~~~~~~~~~~~eel~~~~~ai~ 220 (567)
T 1dce_A 192 HPQPDSGPQGRLPENVLLKELELVQNAFF 220 (567)
T ss_dssp SCCCCSSSCCSSCHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccHHHHHHHHHHHHHHHh
Confidence 556788887766644
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=96.85 E-value=0.0039 Score=54.62 Aligned_cols=113 Identities=5% Similarity=-0.147 Sum_probs=91.1
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCCcchHHHHHHHHhh----cCC
Q 040319 517 HRQGDEALAVWSSMEKASIKPDAITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGY----WGF 592 (812)
Q Consensus 517 ~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~----~g~ 592 (812)
.+++++|++.|++..+.| .|+.. +-..|.. .+.+++|.++|+...+. -+...+..|..+|.. .++
T Consensus 8 ~~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~--g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d 76 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELN-EMFGC----LSLVSNS--QINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKD 76 (138)
T ss_dssp HHHHHHHHHHHHHHHHTT-CTTHH----HHHHTCT--TSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCC
T ss_pred ccCHHHHHHHHHHHHcCC-CHhhh----HHHHHHc--CCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCcc
Confidence 346789999999999987 44444 5555666 67788899999988762 467788888888888 889
Q ss_pred hHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHccCC
Q 040319 593 LEEAEETINNMPFQPKVSVWRALLDSCRI----RLNTTIGKRVAKHILAMEP 640 (812)
Q Consensus 593 ~~~A~~~~~~m~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~p 640 (812)
+++|++.+++.--.-++..+..|...|.. .+|.++|...++++.+...
T Consensus 77 ~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 77 LRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 99999999986544567778888888888 8999999999999998754
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=96.85 E-value=0.002 Score=51.24 Aligned_cols=64 Identities=13% Similarity=0.222 Sum_probs=59.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCCcchHHHHHHHHHh
Q 040319 608 KVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWHNSELVREDMRE 671 (812)
Q Consensus 608 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 671 (812)
+...|..+...+...|+++.|...++++++++|+++..+..++.+|...|++++|.+.+++..+
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 3567888888899999999999999999999999999999999999999999999999998755
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.83 E-value=0.0015 Score=69.51 Aligned_cols=83 Identities=12% Similarity=0.101 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHcc-----CCCC---CchHHHHHhhhhhCCCcchHHHHHHHHHhCCCCCCCcee
Q 040319 610 SVWRALLDSCRIRLNTTIGKRVAKHILAM-----EPQD---PATYILVSNLYSSSGRWHNSELVREDMREKGFRKHPSRS 681 (812)
Q Consensus 610 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~p~~---~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~~~~~~s 681 (812)
.+++.|..+|...|++++|+..+++++++ .|++ ...|..|+.+|..+|++++|..++++..+.-. +
T Consensus 341 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~-~----- 414 (433)
T 3qww_A 341 HMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIME-V----- 414 (433)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-H-----
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHH-H-----
Confidence 35555666666666666666666666542 3443 44577888889999999999888887644211 0
Q ss_pred EEEECCEEEEEeeCCCCCcchHHHHHHHH
Q 040319 682 WIIHQNKVHSFYVRDKSHPREKDIYSGLE 710 (812)
Q Consensus 682 ~~~~~~~~~~f~~~~~~~~~~~~i~~~l~ 710 (812)
.-...||...+++..|+
T Consensus 415 ------------~lG~~Hp~~~~l~~~l~ 431 (433)
T 3qww_A 415 ------------AHGKDHPYISEIKQEIE 431 (433)
T ss_dssp ------------HTCTTCHHHHHHHHHHH
T ss_pred ------------HcCCCChHHHHHHHHHh
Confidence 11246888887766554
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=96.73 E-value=0.00065 Score=70.24 Aligned_cols=150 Identities=5% Similarity=0.011 Sum_probs=88.2
Q ss_pred HHHHHHhcCCHHHHHHHHhcCCCCCCceeeeHHHHHHHHHcCChhhHHHHHHHhcccCCCCCChhhHHHHHHHhcCccch
Q 040319 375 LLDMLTRCGRMADAEKMFYRWPTDRDDSIIWTSMICGYARSGKPEHAILLFHQSQSEATVVPDEIALTSVLGVCGTLGFH 454 (812)
Q Consensus 375 Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~a~~~~~~~ 454 (812)
.++++.+.|++.-....+..+. ..++...-.++-..|....+++.-. .-+..|.+...+
T Consensus 384 vV~~~~k~~~LpLIkpYL~~Vq-~~N~~aVNeAln~L~IEEEDy~~LR--------------------~SId~ydNFD~i 442 (624)
T 3lvg_A 384 AVNYFSKVKQLPLVKPYLRSVQ-NHNNKSVNESLNNLFITEEDYQALR--------------------TSIDAYDNFDNI 442 (624)
T ss_dssp THHHHHTTTCGGGGTGGGTSCC-CSCCHHHHHHHHHHHHHTTCCHHHH--------------------HTTSSCCCSCTT
T ss_pred HHHHHHhcCCchhhHHHHHHHH-HhhHHHHHHHHHHHHhhhhhHHHHH--------------------HHHHHhccccHH
Confidence 3455667777777777777766 5554555555666666666654322 222233334444
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHhhhcCCHHHHHHHHccCCC-CChhHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 040319 455 EMGKQIHSYALKTGFSSDLGVANSMVSMYFKCCNMSNAIKAFNKMPS-HDIVSWNGLIAGHLLHRQGDEALAVWSSMEKA 533 (812)
Q Consensus 455 ~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 533 (812)
..|.++- + ..-...-..-...|.|.++++++..+.++=.- +| .|..-+..|+.+-|.++++-..+.
T Consensus 443 ~LA~rLE----k---HeL~eFRrIAA~LYkkn~rw~qsi~l~KkDklykD------AietAa~S~~~elaeeLL~yFv~~ 509 (624)
T 3lvg_A 443 SLAQRLE----K---HELIEFRRIAAYLFKGNNRWKQSVELCKKDSLYKD------AMQYASESKDTELAEELLQWFLQE 509 (624)
T ss_dssp HHHHHHH----T---CSSHHHHHHHHHHHHTTCHHHHHSSCSSTTCCTTG------GGTTTTTCCCTTHHHHHHHHHHHH
T ss_pred HHHHHHh----h---CchHHHHHHHHHHHHhcccHHHHHHHHHhcccHHH------HHHHHHHcCCHHHHHHHHHHHHHc
Confidence 4444331 1 11222333445678889999998877643221 22 233445678888888898888886
Q ss_pred CCCCCHHHHHHHHHHhcCCCCchHHHHHHH
Q 040319 534 SIKPDAITFVLIISAYRYTNLNLVDSCRKL 563 (812)
Q Consensus 534 g~~pd~~t~~~ll~a~~~~~~g~~~~a~~~ 563 (812)
| +...|.+.|-.|-+ .=+++-+.++
T Consensus 510 g---~~EcF~a~LytCYd--LlrpDvVlEl 534 (624)
T 3lvg_A 510 E---KRECFGACLFTCYD--LLRPDVVLET 534 (624)
T ss_dssp C---STHHHHHHHHHTSS--SSSCHHHHHH
T ss_pred C---chHHHHHHHHHHhh--ccChHHHHHH
Confidence 5 55678888888877 5555555443
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=96.72 E-value=0.0027 Score=53.42 Aligned_cols=79 Identities=11% Similarity=0.037 Sum_probs=56.2
Q ss_pred HHHHHHHhhhhcCccC-CcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 040319 560 CRKLFLSMKTIYNIEP-TSEHYASLVSVLGYWGFLEEAEETINNMP-FQP-KVSVWRALLDSCRIRLNTTIGKRVAKHIL 636 (812)
Q Consensus 560 a~~~~~~m~~~~~~~p-~~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 636 (812)
+.+.|+...+ ..| +...|..+..+|.+.|++++|+..+++.. ..| +...|..+..++...|+.+.|...+++++
T Consensus 4 a~~~~~~al~---~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 4 ITERLEAMLA---QGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp HHHHHHHHHT---TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHH---hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4455555543 233 35667777777777778877777777644 344 56678888888888899999999988888
Q ss_pred ccCCC
Q 040319 637 AMEPQ 641 (812)
Q Consensus 637 ~~~p~ 641 (812)
++.|+
T Consensus 81 ~~~~~ 85 (115)
T 2kat_A 81 AAAQS 85 (115)
T ss_dssp HHHHH
T ss_pred Hhccc
Confidence 88775
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.48 E-value=0.0086 Score=48.54 Aligned_cols=64 Identities=14% Similarity=0.146 Sum_probs=53.6
Q ss_pred HHHHHhhcCChHHHHHHHHhCC-CCC-CHH-HHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchH
Q 040319 583 LVSVLGYWGFLEEAEETINNMP-FQP-KVS-VWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATY 646 (812)
Q Consensus 583 li~~l~~~g~~~~A~~~~~~m~-~~p-~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 646 (812)
.+..+.+.|++++|++.+++.. ..| +.. .|..+..++...|+.+.|...++++++++|+++..+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 4566778899999999988854 455 566 888888889999999999999999999999988776
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=96.45 E-value=0.0062 Score=49.75 Aligned_cols=63 Identities=22% Similarity=0.289 Sum_probs=35.7
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcCCCCchHHHHHHHHHHhhh
Q 040319 503 DIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDA-ITFVLIISAYRYTNLNLVDSCRKLFLSMKT 569 (812)
Q Consensus 503 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~ 569 (812)
+...|..+...|...|++++|+..|++.++ ..|+. ..+..+..++.. .|++++|.+.|+...+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~--~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVE--TDPDYVGTYYHLGKLYER--LDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCTHHHHHHHHHHHH--TTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHH--cCCHHHHHHHHHHHHh
Confidence 344555566666666666666666666665 44443 444455555555 6666666666655543
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.39 E-value=0.057 Score=63.22 Aligned_cols=101 Identities=16% Similarity=0.154 Sum_probs=68.3
Q ss_pred HHHhcCCHHHHHHHHhcCCCCCCceeeeHHHHHHHHHcCChhhHHHHHHHhcccCCCCCChhhHHHHHHHhcCccchHHH
Q 040319 378 MLTRCGRMADAEKMFYRWPTDRDDSIIWTSMICGYARSGKPEHAILLFHQSQSEATVVPDEIALTSVLGVCGTLGFHEMG 457 (812)
Q Consensus 378 ~y~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~a~~~~~~~~~a 457 (812)
....+|++++|.++.+.+. +...|..+...+.+.++++.|.+.|.++.. |..+...+...++.+..
T Consensus 661 ~~l~~~~~~~A~~~~~~~~----~~~~W~~la~~al~~~~~~~A~~~y~~~~d----------~~~l~~l~~~~~~~~~~ 726 (814)
T 3mkq_A 661 LALKVGQLTLARDLLTDES----AEMKWRALGDASLQRFNFKLAIEAFTNAHD----------LESLFLLHSSFNNKEGL 726 (814)
T ss_dssp HHHHHTCHHHHHHHHTTCC----CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC----------HHHHHHHHHHTTCHHHH
T ss_pred hhhhcCCHHHHHHHHHhhC----cHhHHHHHHHHHHHcCCHHHHHHHHHHccC----------hhhhHHHHHHcCCHHHH
Confidence 4567899999999987765 367899999999999999999999988765 33444444445666655
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHhhhcCCHHHHHHHHcc
Q 040319 458 KQIHSYALKTGFSSDLGVANSMVSMYFKCCNMSNAIKAFNK 498 (812)
Q Consensus 458 ~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~ 498 (812)
..+-......|. ++.-..+|.++|++++|.+++.+
T Consensus 727 ~~~~~~a~~~~~------~~~A~~~~~~~g~~~~a~~~~~~ 761 (814)
T 3mkq_A 727 VTLAKDAETTGK------FNLAFNAYWIAGDIQGAKDLLIK 761 (814)
T ss_dssp HHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHcCc------hHHHHHHHHHcCCHHHHHHHHHH
Confidence 555444444331 23344456667777777666544
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.21 E-value=0.02 Score=60.81 Aligned_cols=93 Identities=14% Similarity=0.063 Sum_probs=67.0
Q ss_pred CchHHHHHHHHHHhhhhc--CccCC----cchHHHHHHHHhhcCChHHHHHHHHhCC---------CCCC-HHHHHHHHH
Q 040319 554 LNLVDSCRKLFLSMKTIY--NIEPT----SEHYASLVSVLGYWGFLEEAEETINNMP---------FQPK-VSVWRALLD 617 (812)
Q Consensus 554 ~g~~~~a~~~~~~m~~~~--~~~p~----~~~y~~li~~l~~~g~~~~A~~~~~~m~---------~~p~-~~~~~~ll~ 617 (812)
.|++++|..++++..+.. -+.|+ ..+++.|..+|...|++++|+.++++.. ..|+ ..+++.|..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 567777777777654421 12232 4567888888888888888888887743 3344 457888888
Q ss_pred HHHhcCCHHHHHHHHHHHHcc-----CCCCCchH
Q 040319 618 SCRIRLNTTIGKRVAKHILAM-----EPQDPATY 646 (812)
Q Consensus 618 ~~~~~~~~~~a~~~~~~~~~~-----~p~~~~~~ 646 (812)
.|..+|++++|+..+++++++ .|++|.+-
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~ 424 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIAIMEVAHGKDHPYIS 424 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHH
T ss_pred HHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHH
Confidence 899999999999999999874 67766543
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=96.19 E-value=0.0024 Score=66.15 Aligned_cols=409 Identities=10% Similarity=0.072 Sum_probs=236.5
Q ss_pred cchHHHHHHHHHcCCChhHHHHHHHHhHhcCCCCCCcchHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 040319 166 TVSWNTVISSVVNEFEYEKAFELFRDMKRDNGFTVDYFTISTLLTACTGCFVLMEGRAVHAHAIRIGLGANLSVNNALIG 245 (812)
Q Consensus 166 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 245 (812)
...|..+..+....+...+|++-|-+. -|...|..++.++.+.|.++.-...+....+. ..++.+=+.|+-
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsyIkA-------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi~ 124 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSYIKA-------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIF 124 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSSCCC-------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHHH
T ss_pred ccHHHHHHHHHHccCchHHHHHHHHhC-------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHHH
Confidence 445778888888888887777766332 35667788888888888888877777666554 344556678888
Q ss_pred HHHhcCChHHHHHHHhcCCCCcchhHHHHHHHHHhhCChhHHHHHhccCCC------------------------CCccc
Q 040319 246 FYTKCGRVKDVVALLERMPVMDIITLTEIIIAYMEFGYVDLAVEIFDKMPE------------------------KNSVS 301 (812)
Q Consensus 246 ~~~~~g~~~~A~~l~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~------------------------~d~~~ 301 (812)
+|+|.+++.+-.+++ ..+|..-...+..-+...|.++.|.-+|..+.. .++.+
T Consensus 125 ayAk~~rL~elEefl---~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~kt 201 (624)
T 3lvg_A 125 ALAKTNRLAELEEFI---NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRT 201 (624)
T ss_dssp HHHTSCSSSTTTSTT---SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCS
T ss_pred HHHhhCcHHHHHHHH---cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhH
Confidence 888888877644432 345666666777777788888888777776653 37789
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHhccchhhhhHHHHHhhHHHhcCC-CchhHHHHHHHHHH
Q 040319 302 YNALLAGYCKNGKAMEALGLFVKLLEEGLVLTEFTLTSVVNACGLIMEAKLSEQIHGFVMKFGLG-SNDCIEAALLDMLT 380 (812)
Q Consensus 302 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~-~~~~~~~~Li~~y~ 380 (812)
|..+-.+|...+.+.-|.-.--.++- .|| -+..++.-|-..|.+++-..+++... |++ ....+++-|.-.|+
T Consensus 202 WKeV~~ACvd~~EfrLAqicGLniIv---had--eL~elv~~YE~~G~f~ELIsLlEagl--glErAHmGmFTELaILYs 274 (624)
T 3lvg_A 202 WKEVCFACVDGKEFRLAQMCGLHIVV---HAD--ELEELINYYQDRGYFEELITMLEAAL--GLERAHMGMFTELAILYS 274 (624)
T ss_dssp HHHHTHHHHHSCTTTTTTHHHHHHHC---CSS--CCSGGGSSSSTTCCCTTSTTTHHHHT--TSTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCchHHHHHHHhcchhcc---cHH--HHHHHHHHHHhCCCHHHHHHHHHHHh--CCCchhHHHHHHHHHHHH
Confidence 99999999999988766544333321 122 22345556777777777777766554 343 57788999999999
Q ss_pred hcCCHHHHHHHHhcCCCC---C------CceeeeHHHHHHHHHcCChhhHHHHHHHhcccCCCCCChhhHHHHHHHhcCc
Q 040319 381 RCGRMADAEKMFYRWPTD---R------DDSIIWTSMICGYARSGKPEHAILLFHQSQSEATVVPDEIALTSVLGVCGTL 451 (812)
Q Consensus 381 ~~g~~~~A~~~f~~~~~~---~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~a~~~~ 451 (812)
|- ++++-.+.++..-+. + .....|..++-.|.+-.+++.|... |.. -.|+...-..+.....+.
T Consensus 275 KY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~lt---Mi~---h~~~Aw~h~~Fkdii~KV 347 (624)
T 3lvg_A 275 KF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT---MMN---HPTDAWKEGQFKDIITKV 347 (624)
T ss_dssp SS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHT---TTS---CHHHHCCGGGGTTTGGGC
T ss_pred hc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHH---HHh---CChhhccHHHHHHHHHHc
Confidence 86 455555554433211 1 1255789999999998888877643 322 111211111122222233
Q ss_pred cchHHHHHHHHHHHHhCCCCchhHHHH-------------HHHHhhhcCCHHHHHHHHccCCCCChhHHH-HHHHHHHhc
Q 040319 452 GFHEMGKQIHSYALKTGFSSDLGVANS-------------MVSMYFKCCNMSNAIKAFNKMPSHDIVSWN-GLIAGHLLH 517 (812)
Q Consensus 452 ~~~~~a~~~~~~~~~~g~~~~~~~~~~-------------Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~-~li~~~~~~ 517 (812)
++.+.--+....-++ -.+...+- .+.++.|.|++.-....+..+...|...-| ++-..|...
T Consensus 348 aN~EiyYKAi~FYL~----e~P~lL~DLL~vL~prlDh~RvV~~~~k~~~LpLIkpYL~~Vq~~N~~aVNeAln~L~IEE 423 (624)
T 3lvg_A 348 ANVELYYRAIQFYLE----FKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITE 423 (624)
T ss_dssp SCSHHHHHHHHHHTT----SCCTTSHHHHHHHCTTCCSTTTHHHHHTTTCGGGGTGGGTSCCCSCCHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHH----hChHHHHHHHHhccccCChHHHHHHHHhcCCchhhHHHHHHHHHhhHHHHHHHHHHHHhhh
Confidence 332222111111111 11111222 345566666666666666666666665555 344455555
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCCcchHHHHHHHHhhcCChHHHH
Q 040319 518 RQGDEALAVWSSMEKASIKPDAITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLEEAE 597 (812)
Q Consensus 518 g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~ 597 (812)
.+++ +...-+.+|-. -..+.-|.++ .+ .+-.+.-..-..+|.+.+++++|+
T Consensus 424 EDy~-------------------~LR~SId~ydN--FD~i~LA~rL----Ek----HeL~eFRrIAA~LYkkn~rw~qsi 474 (624)
T 3lvg_A 424 EDYQ-------------------ALRTSIDAYDN--FDNISLAQRL----EK----HELIEFRRIAAYLFKGNNRWKQSV 474 (624)
T ss_dssp TCCH-------------------HHHHTTSSCCC--SCTTHHHHHH----HT----CSSHHHHHHHHHHHHTTCHHHHHS
T ss_pred hhHH-------------------HHHHHHHHhcc--ccHHHHHHHH----hh----CchHHHHHHHHHHHHhcccHHHHH
Confidence 5543 22222222322 2222222221 11 111222233345677888888888
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccC
Q 040319 598 ETINNMPFQPKVSVWRALLDSCRIRLNTTIGKRVAKHILAME 639 (812)
Q Consensus 598 ~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 639 (812)
++.++=.+ |.-.+......|+.+.++..++-.++.+
T Consensus 475 ~l~KkDkl------ykDAietAa~S~~~elaeeLL~yFv~~g 510 (624)
T 3lvg_A 475 ELCKKDSL------YKDAMQYASESKDTELAEELLQWFLQEE 510 (624)
T ss_dssp SCSSTTCC------TTGGGTTTTTCCCTTHHHHHHHHHHHHC
T ss_pred HHHHhccc------HHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 77665332 2223334456677777777776666644
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.17 E-value=0.0066 Score=49.24 Aligned_cols=58 Identities=17% Similarity=0.238 Sum_probs=52.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHccCCCCCc-hHHHHHhhhhhCCCcchHHHHHHHHHhC
Q 040319 615 LLDSCRIRLNTTIGKRVAKHILAMEPQDPA-TYILVSNLYSSSGRWHNSELVREDMREK 672 (812)
Q Consensus 615 ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~-~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 672 (812)
....+...|+++.|...++++++++|+++. .+..++.+|...|++++|.+.+++..+.
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 345677889999999999999999999999 9999999999999999999999988654
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=96.00 E-value=0.01 Score=57.85 Aligned_cols=87 Identities=10% Similarity=0.073 Sum_probs=70.5
Q ss_pred hHHHHHHHHhCC-CCCC---HHHHHHHHHHHHh-----cCCHHHHHHHHHHHHccCCCC-CchHHHHHhhhhhC-CCcch
Q 040319 593 LEEAEETINNMP-FQPK---VSVWRALLDSCRI-----RLNTTIGKRVAKHILAMEPQD-PATYILVSNLYSSS-GRWHN 661 (812)
Q Consensus 593 ~~~A~~~~~~m~-~~p~---~~~~~~ll~~~~~-----~~~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~y~~~-g~~~~ 661 (812)
..+|..++++.. +.|+ ...|..|...|.. -|+.++|++.+++++++.|+. ..+++.++..|+.. |+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 455666666643 6776 5678888888877 499999999999999999974 99999999999995 99999
Q ss_pred HHHHHHHHHhCCCCCCCc
Q 040319 662 SELVREDMREKGFRKHPS 679 (812)
Q Consensus 662 a~~~~~~m~~~g~~~~~~ 679 (812)
|.+.+++.........|+
T Consensus 259 a~~~L~kAL~a~p~~~P~ 276 (301)
T 3u64_A 259 FDEALDRALAIDPESVPH 276 (301)
T ss_dssp HHHHHHHHHHCCGGGCSS
T ss_pred HHHHHHHHHcCCCCCCCC
Confidence 999999988766654454
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=95.99 E-value=0.029 Score=57.14 Aligned_cols=134 Identities=12% Similarity=0.065 Sum_probs=91.5
Q ss_pred CCCCHHHHHHHHHHhcC---CCCchHHHHHHHHHHhhhhcCccCC-cchHHHHHHHHh----hcC-------ChHHHHHH
Q 040319 535 IKPDAITFVLIISAYRY---TNLNLVDSCRKLFLSMKTIYNIEPT-SEHYASLVSVLG----YWG-------FLEEAEET 599 (812)
Q Consensus 535 ~~pd~~t~~~ll~a~~~---~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~----~~g-------~~~~A~~~ 599 (812)
...|...|...+.+... .......+|..+|++..+ +.|+ ...|..+.-++. ..+ .+.+|.+-
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~---lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a 266 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ---SSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDN 266 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHH
Confidence 34444556666654332 013456899999999987 5687 344443333221 111 12233333
Q ss_pred HHhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCCcchHHHHHHHHHhC
Q 040319 600 INNMPF-QPKVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWHNSELVREDMREK 672 (812)
Q Consensus 600 ~~~m~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 672 (812)
...+.. +.++.+|..+.-.+...|+++.|...++++++++|+ ...|..++.++.-.|++++|.+.+++....
T Consensus 267 ~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL 339 (372)
T 3ly7_A 267 IVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNL 339 (372)
T ss_dssp HHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 334443 447888888877777789999999999999999985 678899999999999999999999887554
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=95.82 E-value=0.042 Score=58.45 Aligned_cols=96 Identities=7% Similarity=-0.132 Sum_probs=58.7
Q ss_pred CchHHHHHHHHHHhhhhcC--ccCC----cchHHHHHHHHhhcCChHHHHHHHHhCC---------CCCC-HHHHHHHHH
Q 040319 554 LNLVDSCRKLFLSMKTIYN--IEPT----SEHYASLVSVLGYWGFLEEAEETINNMP---------FQPK-VSVWRALLD 617 (812)
Q Consensus 554 ~g~~~~a~~~~~~m~~~~~--~~p~----~~~y~~li~~l~~~g~~~~A~~~~~~m~---------~~p~-~~~~~~ll~ 617 (812)
.|.+++|..++++..+... +.|+ ..+++.+..+|...|++++|+.++++.. ..|+ ..+++.|..
T Consensus 300 ~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~ 379 (429)
T 3qwp_A 300 HWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGK 379 (429)
T ss_dssp TTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHH
Confidence 4555555555554443111 1122 3456666666667777777776666532 2343 456777778
Q ss_pred HHHhcCCHHHHHHHHHHHHc-----cCCCCCchHHHH
Q 040319 618 SCRIRLNTTIGKRVAKHILA-----MEPQDPATYILV 649 (812)
Q Consensus 618 ~~~~~~~~~~a~~~~~~~~~-----~~p~~~~~~~~l 649 (812)
.|..+|++++|+..++++++ +.|++|.+-..+
T Consensus 380 ~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~ 416 (429)
T 3qwp_A 380 LQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLI 416 (429)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 88888888888888888876 467776555443
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=95.47 E-value=0.47 Score=55.34 Aligned_cols=97 Identities=16% Similarity=0.209 Sum_probs=67.1
Q ss_pred HhhhcCCCHHHHHHHHhcCCCCCcchHHHHHHHHHcCCChhHHHHHHHHhHhcCCCCCCcchHHHHHHHHhcCCChHHHH
Q 040319 143 LYGKFSFCLDYLLKLFDELPHKDTVSWNTVISSVVNEFEYEKAFELFRDMKRDNGFTVDYFTISTLLTACTGCFVLMEGR 222 (812)
Q Consensus 143 ~y~~~g~~~~~a~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~~~~~~a~ 222 (812)
....+| +++.|.++.+.+. +...|..+...+.+.|+++.|.+.|..+ .. |..+...+...++.+...
T Consensus 661 ~~l~~~-~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~-~d---------~~~l~~l~~~~~~~~~~~ 727 (814)
T 3mkq_A 661 LALKVG-QLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNA-HD---------LESLFLLHSSFNNKEGLV 727 (814)
T ss_dssp HHHHHT-CHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHH-TC---------HHHHHHHHHHTTCHHHHH
T ss_pred hhhhcC-CHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHc-cC---------hhhhHHHHHHcCCHHHHH
Confidence 345567 8999999887764 5578999999999999999999999988 33 445555555566666655
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHH
Q 040319 223 AVHAHAIRIGLGANLSVNNALIGFYTKCGRVKDVVA 258 (812)
Q Consensus 223 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 258 (812)
.+-......|. ++....+|.+.|++++|.+
T Consensus 728 ~~~~~a~~~~~------~~~A~~~~~~~g~~~~a~~ 757 (814)
T 3mkq_A 728 TLAKDAETTGK------FNLAFNAYWIAGDIQGAKD 757 (814)
T ss_dssp HHHHHHHHTTC------HHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHcCc------hHHHHHHHHHcCCHHHHHH
Confidence 55555554431 2334445666677777666
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.46 E-value=0.062 Score=46.95 Aligned_cols=93 Identities=12% Similarity=-0.058 Sum_probs=59.5
Q ss_pred chHHHHHHHHHHhhhhcCccCCcchHHHHHHHHhhcC---ChHHHHHHHHhCC-CC-C--CHHHHHHHHHHHHhcCCHHH
Q 040319 555 NLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWG---FLEEAEETINNMP-FQ-P--KVSVWRALLDSCRIRLNTTI 627 (812)
Q Consensus 555 g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g---~~~~A~~~~~~m~-~~-p--~~~~~~~ll~~~~~~~~~~~ 627 (812)
..+..+.+.|.+..+ .+ .++.++...+.-+|.+.+ ++++++.++++.. .. | +.-.+-.|.-+|.+.|+++.
T Consensus 12 ~~l~~~~~~y~~e~~-~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~ 89 (152)
T 1pc2_A 12 EDLLKFEKKFQSEKA-AG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEK 89 (152)
T ss_dssp HHHHHHHHHHHHHHH-TT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHHHHc-cC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHH
Confidence 344455555554433 11 255566666666666666 4456666665533 22 4 23455666777899999999
Q ss_pred HHHHHHHHHccCCCCCchHHHH
Q 040319 628 GKRVAKHILAMEPQDPATYILV 649 (812)
Q Consensus 628 a~~~~~~~~~~~p~~~~~~~~l 649 (812)
|.+.++++++++|+|..+....
T Consensus 90 A~~y~~~lL~ieP~n~QA~~Lk 111 (152)
T 1pc2_A 90 ALKYVRGLLQTEPQNNQAKELE 111 (152)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHhcCCCCHHHHHHH
Confidence 9999999999999877655543
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.37 E-value=0.045 Score=47.81 Aligned_cols=91 Identities=9% Similarity=-0.011 Sum_probs=71.4
Q ss_pred CCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHccC-C-CCCchHHHHHhhhhhCCCcchHHHHHHHHHhCCCCCCCce
Q 040319 606 QPKVSVWRALLDSCRIRL---NTTIGKRVAKHILAME-P-QDPATYILVSNLYSSSGRWHNSELVREDMREKGFRKHPSR 680 (812)
Q Consensus 606 ~p~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~-p-~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~~~~~~ 680 (812)
.++..+...+..+..+.+ ++++|..+++.+++.+ | ++...+..|+-.|.+.|++++|.+.++..-+. +|+
T Consensus 29 ~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~i----eP~- 103 (152)
T 1pc2_A 29 SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT----EPQ- 103 (152)
T ss_dssp CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH----CTT-
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhc----CCC-
Confidence 467888888888888877 6779999999999998 7 56788999999999999999999999998542 222
Q ss_pred eEEEECCEEEEEeeCCCCCcchHHHHHHHHHHHHHHHHcCcc
Q 040319 681 SWIIHQNKVHSFYVRDKSHPREKDIYSGLEILILECLKAGYV 722 (812)
Q Consensus 681 s~~~~~~~~~~f~~~~~~~~~~~~i~~~l~~l~~~~~~~g~~ 722 (812)
|++... -...+.+++++.|.+
T Consensus 104 ------------------n~QA~~---Lk~~ie~~~~kdgl~ 124 (152)
T 1pc2_A 104 ------------------NNQAKE---LERLIDKAMKKDGLV 124 (152)
T ss_dssp ------------------CHHHHH---HHHHHHHHHHHTTCC
T ss_pred ------------------CHHHHH---HHHHHHHHHHHhhHH
Confidence 444443 345566777777765
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=95.27 E-value=0.082 Score=42.17 Aligned_cols=70 Identities=11% Similarity=0.084 Sum_probs=56.5
Q ss_pred cCCcchHHHHHHHHhhcCC---hHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCC
Q 040319 574 EPTSEHYASLVSVLGYWGF---LEEAEETINNMP-FQP-KVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDP 643 (812)
Q Consensus 574 ~p~~~~y~~li~~l~~~g~---~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~ 643 (812)
.+++..+..+..++...+. .++|..++++.. ..| +...+..+...+...|+++.|...++++++.+|.++
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~ 77 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNL 77 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence 3567788888888865554 689999998865 667 466777777789999999999999999999999843
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=95.03 E-value=6.7 Score=45.16 Aligned_cols=256 Identities=10% Similarity=0.039 Sum_probs=132.7
Q ss_pred HHHHhhCChhHHHHHhccCCCC----Ccc--cHHHHHHHHHhCCChHHHHHHHHHHHHcCC--CCC---H-hHHHHHH-H
Q 040319 276 IAYMEFGYVDLAVEIFDKMPEK----NSV--SYNALLAGYCKNGKAMEALGLFVKLLEEGL--VLT---E-FTLTSVV-N 342 (812)
Q Consensus 276 ~~~~~~g~~~~A~~~f~~m~~~----d~~--~~~~li~~~~~~g~~~~A~~l~~~m~~~g~--~p~---~-~t~~~ll-~ 342 (812)
-+.+..|+.++++.+++..... +.. .-..+.-|....|..+++..++...+...- .-+ . ......+ -
T Consensus 382 LGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGL 461 (963)
T 4ady_A 382 LGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGI 461 (963)
T ss_dssp HHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHH
T ss_pred hhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHH
Confidence 3566788899999999877642 211 222333456677777788888877665321 011 1 1111111 1
Q ss_pred --HhccchhhhhHHHHHhhHHHhcCCCch--hHHHHHHHHHHhcCCHHHHHHHHhcCCCCCCce-eeeHHHHHHHHHcCC
Q 040319 343 --ACGLIMEAKLSEQIHGFVMKFGLGSND--CIEAALLDMLTRCGRMADAEKMFYRWPTDRDDS-IIWTSMICGYARSGK 417 (812)
Q Consensus 343 --a~~~~~~~~~a~~i~~~~~~~g~~~~~--~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~-~~~~~li~~~~~~g~ 417 (812)
++...++- .+...+..++...- +.. ...-+|...|.-.|+-+....++..+....++. .-.-++.-|+...|+
T Consensus 462 Gla~~GS~~e-ev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~ 539 (963)
T 4ady_A 462 GLAAMGSANI-EVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGR 539 (963)
T ss_dssp HHHSTTCCCH-HHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTC
T ss_pred HHHhcCCCCH-HHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCC
Confidence 11222232 22333333322110 111 111233334455677666666665543122212 222333345567889
Q ss_pred hhhHHHHHHHhcccCCCCCChhhHHH---HHHHhcCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHhhhcCCHHHHHH
Q 040319 418 PEHAILLFHQSQSEATVVPDEIALTS---VLGVCGTLGFHEMGKQIHSYALKTGFSSDLGVANSMVSMYFKCCNMSNAIK 494 (812)
Q Consensus 418 ~~~A~~~~~~m~~~~g~~p~~~t~~~---ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~ 494 (812)
.+.+-.+.+.+.. ......-|.. +.-+|+..|+....++++..+.... ..++.-...+.-+..-.|+.+.+.+
T Consensus 540 ~e~~~~li~~L~~---~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~r 615 (963)
T 4ady_A 540 QELADDLITKMLA---SDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPR 615 (963)
T ss_dssp GGGGHHHHHHHHH---CSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHH
T ss_pred hHHHHHHHHHHHh---CCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHH
Confidence 8888888888775 1112223332 3346788889888888888877632 2233322222223334666677777
Q ss_pred HHccCCC-CC--hhHHHHHHHHHHhcCCh-HHHHHHHHHHHHCCCCCCHH
Q 040319 495 AFNKMPS-HD--IVSWNGLIAGHLLHRQG-DEALAVWSSMEKASIKPDAI 540 (812)
Q Consensus 495 ~f~~~~~-~~--~~~~~~li~~~~~~g~~-~~A~~l~~~m~~~g~~pd~~ 540 (812)
+++.+.+ .| +..--++.-|....|.. .+|+.++..+.. .+|..
T Consensus 616 lv~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~---D~d~~ 662 (963)
T 4ady_A 616 IVQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK---DPVDF 662 (963)
T ss_dssp HTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT---CSSHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc---CCCHH
Confidence 7765543 33 33333444455555555 678888888865 45553
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=94.91 E-value=0.074 Score=43.55 Aligned_cols=73 Identities=16% Similarity=0.006 Sum_probs=54.4
Q ss_pred chHHHHHHHHhhcCChHHHHHHHHhCC---------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHH
Q 040319 578 EHYASLVSVLGYWGFLEEAEETINNMP---------FQPKVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYIL 648 (812)
Q Consensus 578 ~~y~~li~~l~~~g~~~~A~~~~~~m~---------~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 648 (812)
.-+-.|...+.+.|+++.|...++... -.+...++..|..++.+.|+++.|...++++++++|+++.+...
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n 85 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGN 85 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhh
Confidence 344556666777777777777766532 12346688889999999999999999999999999998776554
Q ss_pred HH
Q 040319 649 VS 650 (812)
Q Consensus 649 l~ 650 (812)
+.
T Consensus 86 ~~ 87 (104)
T 2v5f_A 86 LK 87 (104)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=94.82 E-value=1.1 Score=37.70 Aligned_cols=140 Identities=13% Similarity=0.068 Sum_probs=85.7
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCCcchHHHHHHHHhhcCChH
Q 040319 515 LLHRQGDEALAVWSSMEKASIKPDAITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLE 594 (812)
Q Consensus 515 ~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~ 594 (812)
...|..++..++..+..... +..-++-++--... .-+-+-..+.++.+-+-+.+. .+|++.
T Consensus 18 ildG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD--~a~C~y~v~vLd~IGkiFDis--------------~C~NlK 78 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLE--SIDCRYMFQVLDKIGSYFDLD--------------KCQNLK 78 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHH--HCCHHHHHHHHHHHGGGSCGG--------------GCSCTH
T ss_pred HHhhhHHHHHHHHHHHcCCC---Cccccceeeeecch--hhchhHHHHHHHHHhhhcCcH--------------hhhcHH
Confidence 34677777788877776632 22233333321111 222333444555554433332 244444
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCCcchHHHHHHHHHhCCC
Q 040319 595 EAEETINNMPFQPKVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWHNSELVREDMREKGF 674 (812)
Q Consensus 595 ~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~ 674 (812)
...+-+-.+. .+.-...--|.....+|..++-..+...++.-+|-+|....-+++.|.+.|+..+|.+++++.-++|+
T Consensus 79 rVi~C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 79 SVVECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 4444443332 12223444566777889999888888887666666788999999999999999999999999999888
Q ss_pred C
Q 040319 675 R 675 (812)
Q Consensus 675 ~ 675 (812)
+
T Consensus 157 k 157 (172)
T 1wy6_A 157 K 157 (172)
T ss_dssp H
T ss_pred H
Confidence 5
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=93.54 E-value=8.4 Score=42.54 Aligned_cols=260 Identities=13% Similarity=0.077 Sum_probs=126.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcCCCCCCceeeeHHHHHHHHHcCChhhHHHHHHHhcccCCCCCChhhHHHHHHHhcC
Q 040319 371 IEAALLDMLTRCGRMADAEKMFYRWPTDRDDSIIWTSMICGYARSGKPEHAILLFHQSQSEATVVPDEIALTSVLGVCGT 450 (812)
Q Consensus 371 ~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~a~~~ 450 (812)
.-+.-+..+.+.++.......+.. + +.+...-.....+....|+..+|......+-......|+ ....++..+.+
T Consensus 74 Lr~~~l~~l~~~~~w~~~l~~~~~-~--p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~~p~--~c~~l~~~~~~ 148 (618)
T 1qsa_A 74 LQSRFVNELARREDWRGLLAFSPE-K--PGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPN--ACDKLFSVWRA 148 (618)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHCCS-C--CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCT--HHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHhccC-C--CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCcH--HHHHHHHHHHH
Confidence 334455566677777777775554 2 122333344556666777777777766666552223333 33445544443
Q ss_pred ccchHHH--HHHHHHHHHhC-----------CCCch-hHHHHHHHHhhhcCCHHHHHHHHccCCCCChhH---HHHHHHH
Q 040319 451 LGFHEMG--KQIHSYALKTG-----------FSSDL-GVANSMVSMYFKCCNMSNAIKAFNKMPSHDIVS---WNGLIAG 513 (812)
Q Consensus 451 ~~~~~~a--~~~~~~~~~~g-----------~~~~~-~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~---~~~li~~ 513 (812)
.|.+... .+=...+...| +.++. .....++..+.+-..+ ....... .++... ...-+.-
T Consensus 149 ~g~lt~~~~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~p~~~---~~~~~~~-~~~~~~~~~~~~~~~r 224 (618)
T 1qsa_A 149 SGKQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPNTV---LTFARTT-GATDFTRQMAAVAFAS 224 (618)
T ss_dssp TTCSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGH---HHHHHHS-CCCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhChHhH---HHHHhcc-CCChhhHHHHHHHHHH
Confidence 3322111 11111111111 11111 1112222222222222 1111111 111111 1111222
Q ss_pred HHhcCChHHHHHHHHHHHHCC-CCCCHH--HHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCCcchHHHHHHHHhhc
Q 040319 514 HLLHRQGDEALAVWSSMEKAS-IKPDAI--TFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYW 590 (812)
Q Consensus 514 ~~~~g~~~~A~~l~~~m~~~g-~~pd~~--t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~ 590 (812)
+++ .+.+.|..+|....+.+ +.+... ....+...... .+...++...+...... .++.....-.+....+.
T Consensus 225 lar-~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~--~~~~~~~~~~~~~~~~~---~~~~~~~e~~~r~Alr~ 298 (618)
T 1qsa_A 225 VAR-QDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMG--NDVTDEQAKWRDDAIMR---SQSTSLIERRVRMALGT 298 (618)
T ss_dssp HHH-HCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCS--TTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHH
T ss_pred HHh-cCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHH--cCCChHHHHHHHhcccc---CCChHHHHHHHHHHHHC
Confidence 333 47899999998886543 322222 12222223333 45355666666654431 23322233334444578
Q ss_pred CChHHHHHHHHhCCCCC-CHHHHH-HHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHH
Q 040319 591 GFLEEAEETINNMPFQP-KVSVWR-ALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILV 649 (812)
Q Consensus 591 g~~~~A~~~~~~m~~~p-~~~~~~-~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 649 (812)
|+++.|...|+.|+..+ +..-|. -+..+....|+.+.|..+++++.+ + ...|-.|
T Consensus 299 ~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~--~--~~fYg~l 355 (618)
T 1qsa_A 299 GDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ--Q--RGFYPMV 355 (618)
T ss_dssp TCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--S--CSHHHHH
T ss_pred CCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc--C--CChHHHH
Confidence 99999999999998443 222222 233456778999999999999975 3 2456555
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=92.91 E-value=0.55 Score=45.80 Aligned_cols=112 Identities=10% Similarity=0.082 Sum_probs=68.4
Q ss_pred cCCHHHHHHHHccCCCCC--hhHHHHHHHH-HHhc--CC------hHHHHHHHHHHHHCCCCCC---HHHHHHHHHHhcC
Q 040319 486 CCNMSNAIKAFNKMPSHD--IVSWNGLIAG-HLLH--RQ------GDEALAVWSSMEKASIKPD---AITFVLIISAYRY 551 (812)
Q Consensus 486 ~g~~~~A~~~f~~~~~~~--~~~~~~li~~-~~~~--g~------~~~A~~l~~~m~~~g~~pd---~~t~~~ll~a~~~ 551 (812)
.|+..+-...+.++...| ...|..++.+ +... |. ...|...+++.++ +.|+ ...+..+...|..
T Consensus 134 ~~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~~ 211 (301)
T 3u64_A 134 SGDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACD--LWPSYQEGAVWNVLTKFYAA 211 (301)
T ss_dssp SSCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHHH
T ss_pred hcchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHh
Confidence 444445555566665433 4567776653 3332 32 3567777788777 7777 2455655555554
Q ss_pred C---CCchHHHHHHHHHHhhhhcCccC--CcchHHHHHHHHhhc-CChHHHHHHHHh
Q 040319 552 T---NLNLVDSCRKLFLSMKTIYNIEP--TSEHYASLVSVLGYW-GFLEEAEETINN 602 (812)
Q Consensus 552 ~---~~g~~~~a~~~~~~m~~~~~~~p--~~~~y~~li~~l~~~-g~~~~A~~~~~~ 602 (812)
. .-|+.++|.++|++..+ +.| ++.++..+.+.|++. |+.++|.+.+++
T Consensus 212 vPp~~gGd~ekA~~~ferAL~---LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~k 265 (301)
T 3u64_A 212 APESFGGGMEKAHTAFEHLTR---YCSAHDPDHHITYADALCIPLNNRAGFDEALDR 265 (301)
T ss_dssp SCTTTTCCHHHHHHHHHHHHH---HCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHH
T ss_pred CCCccCCCHHHHHHHHHHHHH---hCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 1 01778888888887776 456 266777777777663 667776666665
|
| >2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A | Back alignment and structure |
|---|
Probab=92.47 E-value=7.7 Score=43.00 Aligned_cols=80 Identities=13% Similarity=-0.054 Sum_probs=42.8
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHhccchhhhhHHHHHhhHHHhcCCCchhHHHHHHHHHHh---
Q 040319 305 LLAGYCKNGKAMEALGLFVKLLEEGLVLTEFTLTSVVNACGLIMEAKLSEQIHGFVMKFGLGSNDCIEAALLDMLTR--- 381 (812)
Q Consensus 305 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~--- 381 (812)
....+.-.|+++.|++.+... ...|.+.+...+..++-.+- ...++..- .+ .| ..-+..||..|.+
T Consensus 300 Yf~vLlLtgqFE~AI~~L~~~----~~vdAVH~AIaL~~~gLL~~---~~~lls~~--~~-~~-~lN~arLI~~Yt~~F~ 368 (661)
T 2qx5_A 300 YLQTLLLSGLYGLAIDYTYTF----SEMDAVHLAIGLASLKLFKI---DSSTRLTK--KP-KR-DIRFANILANYTKSFR 368 (661)
T ss_dssp HHHHHHHTTCHHHHHHHHHTT----CHHHHHHHHHHHHHTTC------------------------CHHHHHHHHHTTTT
T ss_pred HHHHHHHHhhHHHHHHHHHhc----CchhHHHHHHHHHHcCCccC---CCcccccC--CC-cc-cccHHHHHHHHHHHhh
Confidence 455667789999999887654 46677777777776554442 11111110 00 11 2225567777765
Q ss_pred cCCHHHHHHHHhcC
Q 040319 382 CGRMADAEKMFYRW 395 (812)
Q Consensus 382 ~g~~~~A~~~f~~~ 395 (812)
..+..+|.+.|--+
T Consensus 369 ~td~~~Al~Y~~li 382 (661)
T 2qx5_A 369 YSDPRVAVEYLVLI 382 (661)
T ss_dssp TTCHHHHHHHHHGG
T ss_pred cCCHHHHHHHHHHH
Confidence 45666676666554
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=92.27 E-value=1.2 Score=37.18 Aligned_cols=75 Identities=9% Similarity=-0.055 Sum_probs=49.5
Q ss_pred CCcchHHHHHHHHhhcCChHH---HHHHHHhCC-CC-C-C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHH
Q 040319 575 PTSEHYASLVSVLGYWGFLEE---AEETINNMP-FQ-P-K-VSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYI 647 (812)
Q Consensus 575 p~~~~y~~li~~l~~~g~~~~---A~~~~~~m~-~~-p-~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 647 (812)
|+..+-..+.-+|.+.....+ ++.++++.. .. | + .-..-.|.-++.+.|+++.|.+..+.+++.+|+|..+..
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~~ 112 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKE 112 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHH
Confidence 555555555666666665444 666665543 22 3 1 223344555789999999999999999999999876655
Q ss_pred HH
Q 040319 648 LV 649 (812)
Q Consensus 648 ~l 649 (812)
+.
T Consensus 113 Lk 114 (126)
T 1nzn_A 113 LE 114 (126)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.12 E-value=0.26 Score=55.53 Aligned_cols=53 Identities=6% Similarity=-0.004 Sum_probs=50.2
Q ss_pred HHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCCcchHHHHHHHHH
Q 040319 618 SCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWHNSELVREDMR 670 (812)
Q Consensus 618 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 670 (812)
-|...|+++.|..+++++...-|++..+|..|+.+|...|+|+.|.-.+..++
T Consensus 346 FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 346 FLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 36778999999999999999999999999999999999999999999999885
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.82 E-value=3.2 Score=37.12 Aligned_cols=129 Identities=14% Similarity=0.180 Sum_probs=73.3
Q ss_pred HHhhhcCCHHHHHHHHccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCchHHHH
Q 040319 481 SMYFKCCNMSNAIKAFNKMPSHDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDAITFVLIISAYRYTNLNLVDSC 560 (812)
Q Consensus 481 ~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~g~~~~a 560 (812)
+....+|+++.|.++.+++ .+...|..|......+|+++-|.+.|.+... +.-..+| |.. .|+.+.-
T Consensus 13 ~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D-------~~~L~~L--y~~--tg~~e~L 79 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS-------FDKLSFL--YLV--TGDVNKL 79 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC-------HHHHHHH--HHH--HTCHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC-------HHHHHHH--HHH--hCCHHHH
Confidence 3445678888888877665 4567888888888888888888888877543 1111122 222 4444443
Q ss_pred HHHHHHhhhhcCccCCcchHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 040319 561 RKLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLEEAEETINNMPFQPKVSVWRALLDSCRIRLNTTIGKRVAKHI 635 (812)
Q Consensus 561 ~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 635 (812)
.++-+.... ..-++.-...+.-.|+++++.+++.+..--|.+. -..+.+|.-+.|.++.+.+
T Consensus 80 ~kla~iA~~-------~g~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA~------~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 80 SKMQNIAQT-------REDFGSMLLNTFYNNSTKERSSIFAEGGSLPLAY------AVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHHH-------TTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHH------HHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHH-------CccHHHHHHHHHHcCCHHHHHHHHHHCCChHHHH------HHHHHcCcHHHHHHHHHHh
Confidence 333222221 1123444445556677777777777654222221 1234467777777665543
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.54 E-value=3.9 Score=36.58 Aligned_cols=101 Identities=16% Similarity=0.136 Sum_probs=61.0
Q ss_pred HHhcCCHHHHHHHHhcCCCCCCceeeeHHHHHHHHHcCChhhHHHHHHHhcccCCCCCChhhHHHHHHHhcCccchHHHH
Q 040319 379 LTRCGRMADAEKMFYRWPTDRDDSIIWTSMICGYARSGKPEHAILLFHQSQSEATVVPDEIALTSVLGVCGTLGFHEMGK 458 (812)
Q Consensus 379 y~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~ 458 (812)
-.++|+++.|.++-+.+. +...|..+.......|+++-|.+.|.+... +..+.-.+...|+.+.-.
T Consensus 15 AL~lg~l~~A~e~a~~l~----~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D----------~~~L~~Ly~~tg~~e~L~ 80 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKLN----DSITWERLIQEALAQGNASLAEMIYQTQHS----------FDKLSFLYLVTGDVNKLS 80 (177)
T ss_dssp HHHTTCHHHHHHHHHHHC----CHHHHHHHHHHHHHTTCHHHHHHHHHHTTC----------HHHHHHHHHHHTCHHHHH
T ss_pred HHhcCCHHHHHHHHHHhC----CHHHHHHHHHHHHHcCChHHHHHHHHHhCC----------HHHHHHHHHHhCCHHHHH
Confidence 457888888888877664 366888888888889999988888887765 233333334445544444
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHhhhcCCHHHHHHHHccC
Q 040319 459 QIHSYALKTGFSSDLGVANSMVSMYFKCCNMSNAIKAFNKM 499 (812)
Q Consensus 459 ~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~ 499 (812)
.+-......| -++.-...+.-.|+++++.++|.+.
T Consensus 81 kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 81 KMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHC
Confidence 4433333333 1223333344455555555555443
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=90.10 E-value=0.7 Score=37.50 Aligned_cols=63 Identities=10% Similarity=-0.043 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHccC-------CCCCchHHHHHhhhhhCCCcchHHHHHHHHHh
Q 040319 609 VSVWRALLDSCRIRLNTTIGKRVAKHILAME-------PQDPATYILVSNLYSSSGRWHNSELVREDMRE 671 (812)
Q Consensus 609 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-------p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 671 (812)
+.-...|...+...|+++.|...++++++.. +..+..+..|+.+|.+.|++++|....++..+
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 3344567788899999999999999999853 23456789999999999999999999998754
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=89.03 E-value=1.3 Score=37.13 Aligned_cols=66 Identities=5% Similarity=-0.123 Sum_probs=52.6
Q ss_pred CCCHHHHHHHHHHHHhcCCHH---HHHHHHHHHHccC-C-CCCchHHHHHhhhhhCCCcchHHHHHHHHHh
Q 040319 606 QPKVSVWRALLDSCRIRLNTT---IGKRVAKHILAME-P-QDPATYILVSNLYSSSGRWHNSELVREDMRE 671 (812)
Q Consensus 606 ~p~~~~~~~ll~~~~~~~~~~---~a~~~~~~~~~~~-p-~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 671 (812)
.|+..+-..+.++..+.++.. +|..+++.++.-+ | ........|+-.+.+.|++++|.+..+.+-+
T Consensus 32 ~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 32 SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 102 (126)
T ss_dssp CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 366667677777777766554 5999999998877 5 4566788899999999999999999999854
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=88.33 E-value=18 Score=38.10 Aligned_cols=169 Identities=12% Similarity=0.078 Sum_probs=84.3
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHhccchhhhhHHHHHhhHHHhcCCCchhHHHHHHHHHHhc
Q 040319 303 NALLAGYCKNGKAMEALGLFVKLLEEGLVLTEFTLTSVVNACGLIMEAKLSEQIHGFVMKFGLGSNDCIEAALLDMLTRC 382 (812)
Q Consensus 303 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~ 382 (812)
..|...|...|++.+|.+++.++...-...+.... . ..++...+..|...
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~--------------k----------------ve~~l~q~rl~l~~ 190 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSE--------------K----------------IQFILEQMELSILK 190 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHH--------------H----------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHH--------------H----------------HHHHHHHHHHHHHC
Confidence 45667788889999999888888653211111110 0 11222234455555
Q ss_pred CCHHHHHHHHhcCCC------CCCc--eeeeHHHHHHHHHcCChhhHHHHHHHhcccCCCCCChhhHHHHHH-----H-h
Q 040319 383 GRMADAEKMFYRWPT------DRDD--SIIWTSMICGYARSGKPEHAILLFHQSQSEATVVPDEIALTSVLG-----V-C 448 (812)
Q Consensus 383 g~~~~A~~~f~~~~~------~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~-----a-~ 448 (812)
+++..|..++.++.. ..++ ...+..++..+...+++.+|.+.|.+........-|...+..++. . .
T Consensus 191 ~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iL 270 (445)
T 4b4t_P 191 GDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVL 270 (445)
T ss_dssp TCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHh
Confidence 666655555544310 0110 122444555566667777776666665431112222222221111 1 1
Q ss_pred cCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHhhhc--CCHHHHHHHHccCCCCC
Q 040319 449 GTLGFHEMGKQIHSYALKTGFSSDLGVANSMVSMYFKC--CNMSNAIKAFNKMPSHD 503 (812)
Q Consensus 449 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~--g~~~~A~~~f~~~~~~~ 503 (812)
+..+ .+... +.....+...-++...+..|+.+|... .+++.+.+.|.....++
T Consensus 271 a~~~-~~~~~-ll~~~~~~~~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~~L~~~ 325 (445)
T 4b4t_P 271 SPYG-NLQND-LIHKIQNDNNLKKLESQESLVKLFTTNELMRWPIVQKTYEPVLNED 325 (445)
T ss_dssp SSCS-STTHH-HHHSHHHHSSCHHHHHHHHHHHHHHHCCSSSHHHHHHHTCSSTTTC
T ss_pred CCCC-chHHH-HHHHHhhcccccccHHHHHHHHHHHhchHhhhHHHHHHHHHHhccc
Confidence 1111 11222 222222222335677888899988764 56788888887765543
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=88.06 E-value=6.8 Score=33.40 Aligned_cols=43 Identities=7% Similarity=0.115 Sum_probs=19.0
Q ss_pred HHHHHHHHHHccCCC-CCchHHHHHhhhhhCCCcchHHHHHHHH
Q 040319 627 IGKRVAKHILAMEPQ-DPATYILVSNLYSSSGRWHNSELVREDM 669 (812)
Q Consensus 627 ~a~~~~~~~~~~~p~-~~~~~~~l~~~y~~~g~~~~a~~~~~~m 669 (812)
+|..+++.++.-+|. .......|+-.|.+.|++++|.+..+.+
T Consensus 60 ~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~l 103 (144)
T 1y8m_A 60 LGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTL 103 (144)
T ss_dssp HHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 444444444444442 2223334444444455555554444444
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=86.62 E-value=2.8 Score=36.08 Aligned_cols=109 Identities=11% Similarity=0.067 Sum_probs=67.3
Q ss_pred CCChhHHHHHHHHHHhcCCh------HHHHHHHHHHHHCCCCCCH----HHHHHHHHHhcCCCCchHHHHHHHHHHhhhh
Q 040319 501 SHDIVSWNGLIAGHLLHRQG------DEALAVWSSMEKASIKPDA----ITFVLIISAYRYTNLNLVDSCRKLFLSMKTI 570 (812)
Q Consensus 501 ~~~~~~~~~li~~~~~~g~~------~~A~~l~~~m~~~g~~pd~----~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~ 570 (812)
..|..+|-..+...-+.|++ ++..++|++.... ++|+. ..|..+.--|+ .|.
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA------------~~~----- 71 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFA------------ELK----- 71 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHH------------HHH-----
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHH------------HHH-----
Confidence 46778888888888888888 7888888888774 66652 11111111110 001
Q ss_pred cCccCCcchHHHHHHHHhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCch
Q 040319 571 YNIEPTSEHYASLVSVLGYWGFLEEAEETINNMP--FQPKVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPAT 645 (812)
Q Consensus 571 ~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 645 (812)
..++.++|.++|+.+. -+.=+.+|-....--.++|++..|++++.+++.+.|.+...
T Consensus 72 ------------------ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~ 130 (161)
T 4h7y_A 72 ------------------AIQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEM 130 (161)
T ss_dssp ------------------HHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHH
T ss_pred ------------------HhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHH
Confidence 1133344444443331 01116677777777778999999999999999999874443
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=85.75 E-value=57 Score=37.64 Aligned_cols=218 Identities=9% Similarity=-0.022 Sum_probs=110.6
Q ss_pred HHhcCCHHHHHHHHhcCCCC--CCce--eeeHHHHHHHHHcCChhhHHHHHHHhcccCC-CCC---Ch-hhHHH---HHH
Q 040319 379 LTRCGRMADAEKMFYRWPTD--RDDS--IIWTSMICGYARSGKPEHAILLFHQSQSEAT-VVP---DE-IALTS---VLG 446 (812)
Q Consensus 379 y~~~g~~~~A~~~f~~~~~~--~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g-~~p---~~-~t~~~---ll~ 446 (812)
....|+.+++..+++..... .++. ..-..+.-|....|...+++.++........ +.- +. +...+ +--
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 45678888888888876521 1111 1222333456677777778887776554111 000 01 11111 112
Q ss_pred HhcCccchHHHHHHHHHHHHhCCC-CchhHHHHHHHHhhhcCCHHHHHHHHccCCC--CC-hhHHHHHHHHHHhcCChHH
Q 040319 447 VCGTLGFHEMGKQIHSYALKTGFS-SDLGVANSMVSMYFKCCNMSNAIKAFNKMPS--HD-IVSWNGLIAGHLLHRQGDE 522 (812)
Q Consensus 447 a~~~~~~~~~a~~~~~~~~~~g~~-~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~--~~-~~~~~~li~~~~~~g~~~~ 522 (812)
++...++- .+...+..++...-. ......-+|.-.|.-.|+-+....++..+.+ .+ +.-.-++.-|+...|+.+.
T Consensus 464 a~~GS~~e-ev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~ 542 (963)
T 4ady_A 464 AAMGSANI-EVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQEL 542 (963)
T ss_dssp HSTTCCCH-HHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGG
T ss_pred HhcCCCCH-HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHH
Confidence 22323333 333334333332110 0011223445556677887777777665432 22 2223334455567899999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHH-HHHhcCCCCchHHHHHHHHHHhhhhcCccCCcchHHHHHHHHh--hcCChHHHHHH
Q 040319 523 ALAVWSSMEKASIKPDAITFVLI-ISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLG--YWGFLEEAEET 599 (812)
Q Consensus 523 A~~l~~~m~~~g~~pd~~t~~~l-l~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~--~~g~~~~A~~~ 599 (812)
+..+.+.+... ....+-|..+ ..+|+..+.|+.....+++..+..+ ++..+-...+-+++ -.|..+.+..+
T Consensus 543 ~~~li~~L~~~--~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d----~~d~VRraAViaLGlI~~g~~e~v~rl 616 (963)
T 4ady_A 543 ADDLITKMLAS--DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD----SNDDVRRAAVIALGFVLLRDYTTVPRI 616 (963)
T ss_dssp GHHHHHHHHHC--SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC----SCHHHHHHHHHHHHHHTSSSCSSHHHH
T ss_pred HHHHHHHHHhC--CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC----CcHHHHHHHHHHHHhhccCCHHHHHHH
Confidence 99998888872 2222344432 2233333388988777788888762 33333333344443 35665555566
Q ss_pred HHhC
Q 040319 600 INNM 603 (812)
Q Consensus 600 ~~~m 603 (812)
++.+
T Consensus 617 v~~L 620 (963)
T 4ady_A 617 VQLL 620 (963)
T ss_dssp TTTG
T ss_pred HHHH
Confidence 5543
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=85.46 E-value=16 Score=30.86 Aligned_cols=67 Identities=13% Similarity=0.022 Sum_probs=44.2
Q ss_pred CcchHHHHHHHHHcCCChhHHHHHHHHhHhcCCCCCCcchHHHHHHHHhcCCChHHHHHHHHHHHHhCC
Q 040319 165 DTVSWNTVISSVVNEFEYEKAFELFRDMKRDNGFTVDYFTISTLLTACTGCFVLMEGRAVHAHAIRIGL 233 (812)
Q Consensus 165 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~ 233 (812)
+..-.+..+..++.+|.-++-.+++..+.. ..+|++.....+..||.+.|+..++.+++.++-+.|+
T Consensus 90 ~se~vd~ALd~lv~~~KkDqLdki~~~~l~--n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 90 LNEHVNKALDILVIQGKRDKLEEIGREILK--NNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHC----CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHhccHhHHHHHHHHHhc--cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 333445566777777777777777776412 4456666677777777777777777777777777664
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=82.13 E-value=3.2 Score=35.75 Aligned_cols=99 Identities=12% Similarity=0.026 Sum_probs=68.1
Q ss_pred CcchHHHHHHHHhhcCCh------HHHHHHHHhCC--CCCC-HHHHHHHHHH------HHhcCCHHHHHHHHHHHHccCC
Q 040319 576 TSEHYASLVSVLGYWGFL------EEAEETINNMP--FQPK-VSVWRALLDS------CRIRLNTTIGKRVAKHILAMEP 640 (812)
Q Consensus 576 ~~~~y~~li~~l~~~g~~------~~A~~~~~~m~--~~p~-~~~~~~ll~~------~~~~~~~~~a~~~~~~~~~~~p 640 (812)
+.++|-..++.+-+.|+. ++-.++|++.. ++|+ ...|...+.. +...+|++.|+.+++.++++..
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~hK 91 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANCK 91 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHCT
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhH
Confidence 356666666666666666 55556665532 3443 2233333321 2344899999999999998865
Q ss_pred CCCchHHHHHhhhhhCCCcchHHHHHHHHHhCCC
Q 040319 641 QDPATYILVSNLYSSSGRWHNSELVREDMREKGF 674 (812)
Q Consensus 641 ~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~ 674 (812)
.-+..+...+.--.++|+.+.|.++..+....+.
T Consensus 92 kFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~ 125 (161)
T 4h7y_A 92 KFAFVHISFAQFELSQGNVKKSKQLLQKAVERGA 125 (161)
T ss_dssp TBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCC
Confidence 5677788888889999999999999998766544
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=81.92 E-value=42 Score=33.14 Aligned_cols=133 Identities=13% Similarity=0.159 Sum_probs=77.9
Q ss_pred hHHHHHHHHHhhCChhHHHHHhccCCCCCcccHHHHHHHHHhCCChHHHHHH----HHHHHHcCCCCCHhHHHHHHHHhc
Q 040319 270 TLTEIIIAYMEFGYVDLAVEIFDKMPEKNSVSYNALLAGYCKNGKAMEALGL----FVKLLEEGLVLTEFTLTSVVNACG 345 (812)
Q Consensus 270 ~~~~li~~~~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l----~~~m~~~g~~p~~~t~~~ll~a~~ 345 (812)
.|.++..=|.+++++++|++++.. -...+.+.|+...|-++ .+-..+.+++++..+...++..+.
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~ 103 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIA 103 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 455556666666666666666432 22345566776665554 455556788888888777777665
Q ss_pred cch-----hhhhHHHHHhhHHHhcC--CCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCCCCceeeeHHHHHHHHHc
Q 040319 346 LIM-----EAKLSEQIHGFVMKFGL--GSNDCIEAALLDMLTRCGRMADAEKMFYRWPTDRDDSIIWTSMICGYARS 415 (812)
Q Consensus 346 ~~~-----~~~~a~~i~~~~~~~g~--~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~~~li~~~~~~ 415 (812)
... ..+.......+-.+.|- .-++.....+...|.+.|++.+|+..|-.- ..+|...+..|+.-+...
T Consensus 104 ~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~--~~~s~~~~a~~l~~w~~~ 178 (312)
T 2wpv_A 104 ELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLG--THDSMIKYVDLLWDWLCQ 178 (312)
T ss_dssp TCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTS--CHHHHHHHHHHHHHHHHH
T ss_pred HCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhC--CCccHHHHHHHHHHHHHh
Confidence 432 12222333333333332 246778888888899999999998888622 222244555555444443
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=81.44 E-value=14 Score=29.05 Aligned_cols=60 Identities=12% Similarity=-0.057 Sum_probs=44.5
Q ss_pred HHHHhhCChhHHHHHhccCCCCCcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHH
Q 040319 276 IAYMEFGYVDLAVEIFDKMPEKNSVSYNALLAGYCKNGKAMEALGLFVKLLEEGLVLTEFTLT 338 (812)
Q Consensus 276 ~~~~~~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~ 338 (812)
..+...|++++|..+.+.+.-||..+|-+|-. .+.|..+++...+.++-.+| .|....|.
T Consensus 47 sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg-~p~~q~Fa 106 (115)
T 2uwj_G 47 SSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGGSS-DPALADFA 106 (115)
T ss_dssp HHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTCS-SHHHHHHH
T ss_pred HHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 46677888888888999999999999988765 46788888888787777665 34444443
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 812 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.85 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.81 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.42 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.37 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 98.9 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 98.83 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.81 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 98.79 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.74 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.7 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.67 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 98.67 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.6 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.54 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.41 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.38 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.35 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.33 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.31 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.28 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.21 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.18 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.14 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.12 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.1 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.01 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 97.91 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 97.88 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.87 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.83 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 97.82 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.81 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.77 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 97.73 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.73 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.67 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.65 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.56 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 97.56 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.54 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.43 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.36 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.34 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.23 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.22 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.22 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 97.01 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.01 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 96.97 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 96.74 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 96.6 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 96.24 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 96.19 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 96.18 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 91.9 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 91.38 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 90.79 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 90.3 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 89.68 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 88.25 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.85 E-value=3.5e-19 Score=188.72 Aligned_cols=370 Identities=13% Similarity=0.059 Sum_probs=253.5
Q ss_pred HHHHHHhcCChHHHHHHHhcCC---CCcchhHHHHHHHHHhhCChhHHHHHhccCCC---CCcccHHHHHHHHHhCCChH
Q 040319 243 LIGFYTKCGRVKDVVALLERMP---VMDIITLTEIIIAYMEFGYVDLAVEIFDKMPE---KNSVSYNALLAGYCKNGKAM 316 (812)
Q Consensus 243 li~~~~~~g~~~~A~~l~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~ 316 (812)
+...+.+.|++++|.+.++++. ..+...+..+...|.+.|++++|...|++..+ .+..+|..+...|.+.|+++
T Consensus 5 la~~~~~~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~~ 84 (388)
T d1w3ba_ 5 LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhcccc
Confidence 3455666677777777666652 12345555566666666666666666665432 23345555666666666666
Q ss_pred HHHHHHHHHHHcCCCCCHhHHHHHHHHhccchhhhhHHHHHhhHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCC
Q 040319 317 EALGLFVKLLEEGLVLTEFTLTSVVNACGLIMEAKLSEQIHGFVMKFGLGSNDCIEAALLDMLTRCGRMADAEKMFYRWP 396 (812)
Q Consensus 317 ~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~ 396 (812)
+|+..+............ ........+...+....+........
T Consensus 85 ~A~~~~~~~~~~~~~~~~------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (388)
T d1w3ba_ 85 EAIEHYRHALRLKPDFID------------------------------------GYINLAAALVAAGDMEGAVQAYVSAL 128 (388)
T ss_dssp HHHHHHHHHHHHCTTCHH------------------------------------HHHHHHHHHHHHSCSSHHHHHHHHHH
T ss_pred cccccccccccccccccc------------------------------------cccccccccccccccccccccccccc
Confidence 666666665554322111 11111122222222222222221111
Q ss_pred C-CCCceeeeHHHHHHHHHcCChhhHHHHHHHhcccCCCCCCh-hhHHHHHHHhcCccchHHHHHHHHHHHHhCCCCchh
Q 040319 397 T-DRDDSIIWTSMICGYARSGKPEHAILLFHQSQSEATVVPDE-IALTSVLGVCGTLGFHEMGKQIHSYALKTGFSSDLG 474 (812)
Q Consensus 397 ~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~-~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~ 474 (812)
. .......+..........+....+...+.+... ..|+. ..+..+...+...+..+.|...+..+++.. +.+..
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~ 204 (388)
T d1w3ba_ 129 QYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIE---TQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLD 204 (388)
T ss_dssp HHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred ccccccccccccccccccccchhhhhHHHHHHhhc---cCcchhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHH
Confidence 0 111133344444455556666666666666554 33433 344555566677777888887777777653 33566
Q ss_pred HHHHHHHHhhhcCCHHHHHHHHccCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhc
Q 040319 475 VANSMVSMYFKCCNMSNAIKAFNKMPS---HDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDA-ITFVLIISAYR 550 (812)
Q Consensus 475 ~~~~Li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~ 550 (812)
.+..+...|...|++++|...|++... .+...|..+...|...|++++|+..|++.++ +.|+. .++..+..++.
T Consensus 205 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~ 282 (388)
T d1w3ba_ 205 AYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIE--LQPHFPDAYCNLANALK 282 (388)
T ss_dssp HHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TCSSCHHHHHHHHHHHH
T ss_pred HHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHH
Confidence 788888999999999999999887653 5667888899999999999999999999998 67775 56777778888
Q ss_pred CCCCchHHHHHHHHHHhhhhcCccCCcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHH
Q 040319 551 YTNLNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLEEAEETINNMP-FQP-KVSVWRALLDSCRIRLNTTIG 628 (812)
Q Consensus 551 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a 628 (812)
. .|++++|.+.|+..... .+.+...+..+..++.+.|++++|++.+++.. ..| +..+|..+...+...|+.++|
T Consensus 283 ~--~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 358 (388)
T d1w3ba_ 283 E--KGSVAEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEA 358 (388)
T ss_dssp H--HSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHH
T ss_pred H--cCCHHHHHHHHHhhhcc--CCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 8 99999999999988762 34457788999999999999999999999854 667 577888899999999999999
Q ss_pred HHHHHHHHccCCCCCchHHHHHhhhhhCCC
Q 040319 629 KRVAKHILAMEPQDPATYILVSNLYSSSGR 658 (812)
Q Consensus 629 ~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~ 658 (812)
...++++++++|+++.+|..|+++|.+.|+
T Consensus 359 ~~~~~~al~l~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 359 LMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999998885
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.81 E-value=1.2e-17 Score=176.65 Aligned_cols=350 Identities=14% Similarity=0.063 Sum_probs=257.1
Q ss_pred HHHHhhCChhHHHHHhccCCC--C-CcccHHHHHHHHHhCCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHhccchhhhh
Q 040319 276 IAYMEFGYVDLAVEIFDKMPE--K-NSVSYNALLAGYCKNGKAMEALGLFVKLLEEGLVLTEFTLTSVVNACGLIMEAKL 352 (812)
Q Consensus 276 ~~~~~~g~~~~A~~~f~~m~~--~-d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~ 352 (812)
..+.+.|++++|++.|+++.+ | ++..|..+...|.+.|++++|+..|++.++
T Consensus 7 ~~~~~~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~------------------------- 61 (388)
T d1w3ba_ 7 HREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIK------------------------- 61 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------------------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------------------------
Confidence 344555555555555555432 2 233455555555555555555555555544
Q ss_pred HHHHHhhHHHhcCCCchhHHHHHHHHHHhcCCHHHHHHHHhcCCCC-CCceeeeHHHHHHHHHcCChhhHHHHHHHhccc
Q 040319 353 SEQIHGFVMKFGLGSNDCIEAALLDMLTRCGRMADAEKMFYRWPTD-RDDSIIWTSMICGYARSGKPEHAILLFHQSQSE 431 (812)
Q Consensus 353 a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 431 (812)
.. +.+..++..+...|.+.|++++|...|...... +.+...+..........+....+.........
T Consensus 62 ----------~~-p~~~~a~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 129 (388)
T d1w3ba_ 62 ----------QN-PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQ- 129 (388)
T ss_dssp ----------HC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHH-
T ss_pred ----------hC-CCCHHHHHHHHHHhhhhccccccccccccccccccccccccccccccccccccccccccccccccc-
Confidence 22 224456677788889999999999988776522 22233444555555666666666666655554
Q ss_pred CCCCCChhhHHHHHHHhcCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHhhhcCCHHHHHHHHccCCC---CChhHHH
Q 040319 432 ATVVPDEIALTSVLGVCGTLGFHEMGKQIHSYALKTGFSSDLGVANSMVSMYFKCCNMSNAIKAFNKMPS---HDIVSWN 508 (812)
Q Consensus 432 ~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~ 508 (812)
.. .................+....+........... +.+...+..+...+...|++++|...+++..+ .+...|.
T Consensus 130 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 207 (388)
T d1w3ba_ 130 YN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYI 207 (388)
T ss_dssp HC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred cc-cccccccccccccccccchhhhhHHHHHHhhccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHH
Confidence 22 2223333344444555666666766666666543 34567788889999999999999999987653 4567899
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCC-cchHHHHHHH
Q 040319 509 GLIAGHLLHRQGDEALAVWSSMEKASIKPD-AITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPT-SEHYASLVSV 586 (812)
Q Consensus 509 ~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~ 586 (812)
.+...+...|++++|+..|++.... .|+ ...+..+...+.. .|++++|...|+...+ +.|+ ...|..+..+
T Consensus 208 ~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~--~~~~~~A~~~~~~al~---~~p~~~~~~~~l~~~ 280 (388)
T d1w3ba_ 208 NLGNVLKEARIFDRAVAAYLRALSL--SPNHAVVHGNLACVYYE--QGLIDLAIDTYRRAIE---LQPHFPDAYCNLANA 280 (388)
T ss_dssp HHHHHHHTTTCTTHHHHHHHHHHHH--CTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHH---TCSSCHHHHHHHHHH
T ss_pred HHhhhhhccccHHHHHHHHHHhHHH--hhhHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHH
Confidence 9999999999999999999999884 444 4666677778888 9999999999999876 4555 6789999999
Q ss_pred HhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCCcchHHH
Q 040319 587 LGYWGFLEEAEETINNMP--FQPKVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWHNSEL 664 (812)
Q Consensus 587 l~~~g~~~~A~~~~~~m~--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~ 664 (812)
+...|++++|++.++... .+.+...+..+...+...|++++|...++++++++|+++.++..++.+|.+.|++++|.+
T Consensus 281 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 360 (388)
T d1w3ba_ 281 LKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALM 360 (388)
T ss_dssp HHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHH
T ss_pred HHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999998854 445778899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHh
Q 040319 665 VREDMRE 671 (812)
Q Consensus 665 ~~~~m~~ 671 (812)
.+++..+
T Consensus 361 ~~~~al~ 367 (388)
T d1w3ba_ 361 HYKEAIR 367 (388)
T ss_dssp HHHHHHT
T ss_pred HHHHHHH
Confidence 9998754
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.42 E-value=1.7e-12 Score=133.07 Aligned_cols=223 Identities=12% Similarity=0.072 Sum_probs=161.7
Q ss_pred HHHHHHHcCChhhHHHHHHHhcccCCCCCChhhHHHHHHHhcCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHhhhcC
Q 040319 408 MICGYARSGKPEHAILLFHQSQSEATVVPDEIALTSVLGVCGTLGFHEMGKQIHSYALKTGFSSDLGVANSMVSMYFKCC 487 (812)
Q Consensus 408 li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g 487 (812)
....+.+.|++++|+..|+++.+ ..|+ +...+..+..+|...|
T Consensus 25 ~g~~~~~~g~~~~A~~~~~~al~---~~P~----------------------------------~~~a~~~lg~~~~~~~ 67 (323)
T d1fcha_ 25 EGLRRLQEGDLPNAVLLFEAAVQ---QDPK----------------------------------HMEAWQYLGTTQAENE 67 (323)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH---SCTT----------------------------------CHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH---hCCC----------------------------------CHHHHHHHHHHHHHcC
Confidence 44456677777777777777665 3343 3444555566666666
Q ss_pred CHHHHHHHHccCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHH----------------HHHHHH
Q 040319 488 NMSNAIKAFNKMPS---HDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDAITF----------------VLIISA 548 (812)
Q Consensus 488 ~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~----------------~~ll~a 548 (812)
++++|...|++..+ .+...|..+...|...|++++|++.+++... +.|+.... ...+..
T Consensus 68 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (323)
T d1fcha_ 68 QELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLR--YTPAYAHLVTPAEEGAGGAGLGPSKRILGS 145 (323)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TSTTTGGGCC---------------CTTHH
T ss_pred ChHHHHHHHHhhhccccccccccccccccccccccccccccchhhHHH--hccchHHHHHhhhhhhhhcccccchhhHHH
Confidence 66666666655432 3455666677777777777777777777766 44432111 001111
Q ss_pred hcCCCCchHHHHHHHHHHhhhhcCccCCcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHH
Q 040319 549 YRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLEEAEETINNMP-FQP-KVSVWRALLDSCRIRLNTT 626 (812)
Q Consensus 549 ~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~ 626 (812)
+.. .+...++.+.|....+...-.++...+..+..++.+.|++++|+..+++.. ..| +..+|..+...+...|+.+
T Consensus 146 ~~~--~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~ 223 (323)
T d1fcha_ 146 LLS--DSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSE 223 (323)
T ss_dssp HHH--HHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHH--hhHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccch
Confidence 122 466778888888876633333456778899999999999999999999854 455 5788999999999999999
Q ss_pred HHHHHHHHHHccCCCCCchHHHHHhhhhhCCCcchHHHHHHHHHh
Q 040319 627 IGKRVAKHILAMEPQDPATYILVSNLYSSSGRWHNSELVREDMRE 671 (812)
Q Consensus 627 ~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 671 (812)
.|...++++++++|+++.++..++.+|.+.|++++|.+.+++..+
T Consensus 224 ~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 268 (323)
T d1fcha_ 224 EAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALN 268 (323)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999988754
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.37 E-value=5.1e-12 Score=129.32 Aligned_cols=263 Identities=13% Similarity=0.019 Sum_probs=182.5
Q ss_pred HHHHHHhcCCHHHHHHHHhcCCCC-CCceeeeHHHHHHHHHcCChhhHHHHHHHhcccCCCCCCh-hhHHHHHHHhcCcc
Q 040319 375 LLDMLTRCGRMADAEKMFYRWPTD-RDDSIIWTSMICGYARSGKPEHAILLFHQSQSEATVVPDE-IALTSVLGVCGTLG 452 (812)
Q Consensus 375 Li~~y~~~g~~~~A~~~f~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~-~t~~~ll~a~~~~~ 452 (812)
....|.+.|++++|...|+++... +.+..+|..+...|...|++++|+..|.+..+ +.|+. ..+..+...+...|
T Consensus 25 ~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~la~~~~~~~ 101 (323)
T d1fcha_ 25 EGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLE---LKPDNQTALMALAVSFTNES 101 (323)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhc---cccccccccccccccccccc
Confidence 455688999999999999986533 44577899999999999999999999999887 55553 34455556666777
Q ss_pred chHHHHHHHHHHHHhCCCCchhHHHHHHHHhhhcCCHHHHHHHHccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 040319 453 FHEMGKQIHSYALKTGFSSDLGVANSMVSMYFKCCNMSNAIKAFNKMPSHDIVSWNGLIAGHLLHRQGDEALAVWSSMEK 532 (812)
Q Consensus 453 ~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 532 (812)
+++.|...+..+.+..... .......... ....+.......+..+...+.+.+|.+.|++..+
T Consensus 102 ~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~ 164 (323)
T d1fcha_ 102 LQRQACEILRDWLRYTPAY-AHLVTPAEEG----------------AGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVR 164 (323)
T ss_dssp CHHHHHHHHHHHHHTSTTT-GGGCC-------------------------------CTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccchhhHHHhccch-HHHHHhhhhh----------------hhhcccccchhhHHHHHHhhHHHHHHHHHHHHHH
Confidence 7777777776666532110 0000000000 0000111111122334455677889999998887
Q ss_pred CCCCCC---HHHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCC-cchHHHHHHHHhhcCChHHHHHHHHhCC-CCC
Q 040319 533 ASIKPD---AITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPT-SEHYASLVSVLGYWGFLEEAEETINNMP-FQP 607 (812)
Q Consensus 533 ~g~~pd---~~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p 607 (812)
..|+ ...+..+...+.. .|++++|...|+.... ..|+ ...|..+..+|.+.|++++|.+.+++.. ..|
T Consensus 165 --~~p~~~~~~~~~~l~~~~~~--~~~~~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 237 (323)
T d1fcha_ 165 --LDPTSIDPDVQCGLGVLFNL--SGEYDKAVDCFTAALS---VRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQP 237 (323)
T ss_dssp --HSTTSCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred --HhhcccccccchhhHHHHHH--HHHHhhhhcccccccc---cccccccchhhhhhcccccccchhHHHHHHHHHHHhh
Confidence 4443 4566666677777 8999999999998876 3454 7788999999999999999999998854 566
Q ss_pred -CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchH-----------HHHHhhhhhCCCcchHHH
Q 040319 608 -KVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATY-----------ILVSNLYSSSGRWHNSEL 664 (812)
Q Consensus 608 -~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~-----------~~l~~~y~~~g~~~~a~~ 664 (812)
+..+|..+..+|...|++++|+..++++++++|++...+ ..+...+...|+++.+..
T Consensus 238 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~~ 306 (323)
T d1fcha_ 238 GYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGA 306 (323)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHH
T ss_pred ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 577899999999999999999999999999999877654 445556666666665543
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.90 E-value=4.3e-09 Score=106.11 Aligned_cols=190 Identities=7% Similarity=0.054 Sum_probs=139.5
Q ss_pred hHHHHHHHHhhhcCCHHHHHHHHccCCC---CChhHHHHHHHHHHhcCC-hHHHHHHHHHHHHCCCCCCH-HHHHHHHHH
Q 040319 474 GVANSMVSMYFKCCNMSNAIKAFNKMPS---HDIVSWNGLIAGHLLHRQ-GDEALAVWSSMEKASIKPDA-ITFVLIISA 548 (812)
Q Consensus 474 ~~~~~Li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~-~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a 548 (812)
..++-+...+.+.+..++|+.+++++.+ .+...|+.....+...|+ +++|+..+++.++ +.|+. .+|..+...
T Consensus 44 ~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~--~~p~~~~a~~~~~~~ 121 (315)
T d2h6fa1 44 DVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIE--EQPKNYQVWHHRRVL 121 (315)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH--HCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHH--HHHhhhhHHHHHhHH
Confidence 3455556667777888888888877654 345677777777777664 7888888888887 67765 566666666
Q ss_pred hcCCCCchHHHHHHHHHHhhhhcCccCC-cchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCC-
Q 040319 549 YRYTNLNLVDSCRKLFLSMKTIYNIEPT-SEHYASLVSVLGYWGFLEEAEETINNMP-FQP-KVSVWRALLDSCRIRLN- 624 (812)
Q Consensus 549 ~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~- 624 (812)
+.. .|++++|++.|+.+.+ +.|+ ...|..+..++.+.|++++|++.++++. ..| +...|+.+.......+.
T Consensus 122 ~~~--l~~~~eAl~~~~kal~---~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~~ 196 (315)
T d2h6fa1 122 VEW--LRDPSQELEFIADILN---QDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGY 196 (315)
T ss_dssp HHH--HTCCTTHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCS
T ss_pred HHh--hccHHHHHHHHhhhhh---hhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHcccc
Confidence 777 7888888888888876 3454 6778888888888888888888888765 555 56777776665554443
Q ss_pred -----HHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCCcchHHHHHHHHHh
Q 040319 625 -----TTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWHNSELVREDMRE 671 (812)
Q Consensus 625 -----~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 671 (812)
.+.|...++++++++|+++.++..++.+|...| .+++.+.++...+
T Consensus 197 ~~~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~~~-~~~~~~~~~~~~~ 247 (315)
T d2h6fa1 197 NDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRG-LSKYPNLLNQLLD 247 (315)
T ss_dssp CSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTC-GGGCHHHHHHHHH
T ss_pred chhhhhHHhHHHHHHHHHhCCCchHHHHHHHHHHHhcC-hHHHHHHHHHHHH
Confidence 577888888888999988888888888877655 4677777766644
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=98.83 E-value=6.6e-08 Score=99.02 Aligned_cols=262 Identities=13% Similarity=0.000 Sum_probs=161.1
Q ss_pred HHHHHhcCCHHHHHHHHhcCCCC-CCc-----eeeeHHHHHHHHHcCChhhHHHHHHHhcccCCCCCChhhHHHHHHHhc
Q 040319 376 LDMLTRCGRMADAEKMFYRWPTD-RDD-----SIIWTSMICGYARSGKPEHAILLFHQSQSEATVVPDEIALTSVLGVCG 449 (812)
Q Consensus 376 i~~y~~~g~~~~A~~~f~~~~~~-~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~a~~ 449 (812)
...+...|++++|.+.|++.... +++ ...++.+...|...|++++|+..|++......-.++..
T Consensus 19 A~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~---------- 88 (366)
T d1hz4a_ 19 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWH---------- 88 (366)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH----------
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchH----------
Confidence 34456677777777776653211 111 12344555666666777777776666544000011110
Q ss_pred CccchHHHHHHHHHHHHhCCCCchhHHHHHHHHhhhcCCHHHHHHHHccCCC-------CC----hhHHHHHHHHHHhcC
Q 040319 450 TLGFHEMGKQIHSYALKTGFSSDLGVANSMVSMYFKCCNMSNAIKAFNKMPS-------HD----IVSWNGLIAGHLLHR 518 (812)
Q Consensus 450 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~-------~~----~~~~~~li~~~~~~g 518 (812)
.....+..+...|...|++..|...+..... +. ...+..+...+...|
T Consensus 89 ---------------------~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 147 (366)
T d1hz4a_ 89 ---------------------YALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWA 147 (366)
T ss_dssp ---------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTT
T ss_pred ---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhc
Confidence 0122333445556666676666665554321 11 124455667777888
Q ss_pred ChHHHHHHHHHHHHCCCCC----CHHHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCC-----cchHHHHHHHHhh
Q 040319 519 QGDEALAVWSSMEKASIKP----DAITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPT-----SEHYASLVSVLGY 589 (812)
Q Consensus 519 ~~~~A~~l~~~m~~~g~~p----d~~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~~y~~li~~l~~ 589 (812)
+++.|...+++.....-.. ...++......+.. .|...++...+........-... ...+..+...+..
T Consensus 148 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (366)
T d1hz4a_ 148 RLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLA--RGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQM 225 (366)
T ss_dssp CHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHH--HTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHH
T ss_pred chhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHh--hhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHh
Confidence 8888888888777632211 12334444444555 67777777777655442221111 2345666778888
Q ss_pred cCChHHHHHHHHhCC-CCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHc------cCCCCCchHHHHHhhhhhCC
Q 040319 590 WGFLEEAEETINNMP-FQP-----KVSVWRALLDSCRIRLNTTIGKRVAKHILA------MEPQDPATYILVSNLYSSSG 657 (812)
Q Consensus 590 ~g~~~~A~~~~~~m~-~~p-----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~------~~p~~~~~~~~l~~~y~~~g 657 (812)
.|+.++|.+.+++.. ..| ....+..+..++...|+.+.|...+++++. ..|....++..++.+|...|
T Consensus 226 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 305 (366)
T d1hz4a_ 226 TGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAG 305 (366)
T ss_dssp TTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred cccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCC
Confidence 999999999998854 222 244566677788999999999999999874 34556678899999999999
Q ss_pred CcchHHHHHHHHH
Q 040319 658 RWHNSELVREDMR 670 (812)
Q Consensus 658 ~~~~a~~~~~~m~ 670 (812)
++++|.+.+++..
T Consensus 306 ~~~~A~~~l~~Al 318 (366)
T d1hz4a_ 306 RKSDAQRVLLDAL 318 (366)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 9999999988764
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.81 E-value=1.1e-09 Score=111.98 Aligned_cols=262 Identities=7% Similarity=-0.062 Sum_probs=183.3
Q ss_pred hcCCHHHHHHHHhcCCC-CCCceeeeHHHHHH----------HHHcCChhhHHHHHHHhcccCCCCCChh-hHHHHHHHh
Q 040319 381 RCGRMADAEKMFYRWPT-DRDDSIIWTSMICG----------YARSGKPEHAILLFHQSQSEATVVPDEI-ALTSVLGVC 448 (812)
Q Consensus 381 ~~g~~~~A~~~f~~~~~-~~~~~~~~~~li~~----------~~~~g~~~~A~~~~~~m~~~~g~~p~~~-t~~~ll~a~ 448 (812)
+.+..++|..+++.+.. .|++...|+..-.. +...|.+++|+..++.... ..|+.. .+.....++
T Consensus 41 ~~~~~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~---~~pk~~~~~~~~~~~~ 117 (334)
T d1dcea1 41 AGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLR---VNPKSYGTWHHRCWLL 117 (334)
T ss_dssp TTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHH---hCCCcHHHHHHhhHHH
Confidence 33344777777776542 23334456543322 3334557889999998876 456544 344444444
Q ss_pred cCc--cchHHHHHHHHHHHHhCCCCchhH-HHHHHHHhhhcCCHHHHHHHHccCCC---CChhHHHHHHHHHHhcCChHH
Q 040319 449 GTL--GFHEMGKQIHSYALKTGFSSDLGV-ANSMVSMYFKCCNMSNAIKAFNKMPS---HDIVSWNGLIAGHLLHRQGDE 522 (812)
Q Consensus 449 ~~~--~~~~~a~~~~~~~~~~g~~~~~~~-~~~Li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~ 522 (812)
... ++.+.+...+..+++.... +... +..+...+...|..++|...++.+.. .+..+|+.+...+...|++++
T Consensus 118 ~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~ 196 (334)
T d1dcea1 118 SRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPD 196 (334)
T ss_dssp HTCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCC
T ss_pred HHhccccHHHHHHHHHHHHhhCch-hhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHH
Confidence 444 4578888888888886543 3443 34556788889999999999998876 457889999999999999998
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCCcchHHHHHHHHhhcCChHHHHHHHHh
Q 040319 523 ALAVWSSMEKASIKPDAITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLEEAEETINN 602 (812)
Q Consensus 523 A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~ 602 (812)
|...+++..+ +.|+...+... +.. .+..+++...+..... .-.+....+..++..+...|+.++|.+.+.+
T Consensus 197 A~~~~~~~~~--~~~~~~~~~~~---~~~--l~~~~~a~~~~~~~l~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 267 (334)
T d1dcea1 197 SGPQGRLPEN--VLLKELELVQN---AFF--TDPNDQSAWFYHRWLL--GRAEPLFRCELSVEKSTVLQSELESCKELQE 267 (334)
T ss_dssp SSSCCSSCHH--HHHHHHHHHHH---HHH--HCSSCSHHHHHHHHHH--SCCCCSSSCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHH--hHHHHHHHHHH---HHH--hcchhHHHHHHHHHHH--hCcchhhHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 8777776665 44544332222 222 3445566666666654 1234466677778888889999999999887
Q ss_pred CC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhh
Q 040319 603 MP-FQP-KVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSS 655 (812)
Q Consensus 603 m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~ 655 (812)
.. ..| +..+|..+...+...|+.++|...++++++++|.++.+|..|+..+.-
T Consensus 268 ~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L~~~~~~ 322 (334)
T d1dcea1 268 LEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLL 322 (334)
T ss_dssp HCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred HHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHHHHHHHHhH
Confidence 54 666 456888888889999999999999999999999989899888877663
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.79 E-value=3.1e-08 Score=99.70 Aligned_cols=218 Identities=11% Similarity=0.089 Sum_probs=123.0
Q ss_pred eHHHHHHHHHcCChhhHHHHHHHhcccCCCCCChhhHHHHHHHhcCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHhh
Q 040319 405 WTSMICGYARSGKPEHAILLFHQSQSEATVVPDEIALTSVLGVCGTLGFHEMGKQIHSYALKTGFSSDLGVANSMVSMYF 484 (812)
Q Consensus 405 ~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~ 484 (812)
++.+-..+.+.+.+++|+++++++.+ +.|+.. .+|+....++.
T Consensus 46 ~~~~~~~~~~~e~~~~Al~~~~~ai~---lnP~~~----------------------------------~a~~~r~~~l~ 88 (315)
T d2h6fa1 46 YDYFRAVLQRDERSERAFKLTRDAIE---LNAANY----------------------------------TVWHFRRVLLK 88 (315)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHH---HCTTCH----------------------------------HHHHHHHHHHH
T ss_pred HHHHHHHHHhCCchHHHHHHHHHHHH---HCCCCh----------------------------------HHHHHHHHHHH
Confidence 34444555666666777777766666 555544 33444444444
Q ss_pred hcC-CHHHHHHHHccCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcCCCCchHHH
Q 040319 485 KCC-NMSNAIKAFNKMPS---HDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDA-ITFVLIISAYRYTNLNLVDS 559 (812)
Q Consensus 485 k~g-~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~~~g~~~~ 559 (812)
+.| ++++|...++...+ .+..+|+.+...+...|++++|++.++++++ +.|+. ..|..+...+.+ .|++++
T Consensus 89 ~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~--~dp~n~~a~~~~~~~~~~--~~~~~~ 164 (315)
T d2h6fa1 89 SLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILN--QDAKNYHAWQHRQWVIQE--FKLWDN 164 (315)
T ss_dssp HTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH--HCTTCHHHHHHHHHHHHH--HTCCTT
T ss_pred HhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHhhccHHHHHHHHhhhhh--hhhcchHHHHHHHHHHHH--HHhhHH
Confidence 433 25555555554432 3445566665666666666666666666665 44543 445555555555 566666
Q ss_pred HHHHHHHhhhhcCccCC-cchHHHHHHHHhhcCC------hHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHH
Q 040319 560 CRKLFLSMKTIYNIEPT-SEHYASLVSVLGYWGF------LEEAEETINNMP-FQP-KVSVWRALLDSCRIRLNTTIGKR 630 (812)
Q Consensus 560 a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g~------~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~ 630 (812)
|.+.|+.+.+ +.|+ ...|+.+..++.+.|. +++|++.+.+.. ..| +...|..+...+.. ...+++..
T Consensus 165 Al~~~~~al~---~~p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~-~~~~~~~~ 240 (315)
T d2h6fa1 165 ELQYVDQLLK---EDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQD-RGLSKYPN 240 (315)
T ss_dssp HHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTT-TCGGGCHH
T ss_pred HHHHHHHHHH---HCCccHHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHHhCCCchHHHHHHHHHHHh-cChHHHHH
Confidence 6666666554 2342 4445555555444443 456666666543 455 67778777666554 34577888
Q ss_pred HHHHHHccCCCCCc--hHHHHHhhhhhC--CCcchHHHHHH
Q 040319 631 VAKHILAMEPQDPA--TYILVSNLYSSS--GRWHNSELVRE 667 (812)
Q Consensus 631 ~~~~~~~~~p~~~~--~~~~l~~~y~~~--g~~~~a~~~~~ 667 (812)
.++++++++|+... .+..++.+|... +..+.+...++
T Consensus 241 ~~~~~~~l~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~ 281 (315)
T d2h6fa1 241 LLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDILN 281 (315)
T ss_dssp HHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHH
T ss_pred HHHHHHHhCCCcCCHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 88888888887544 345667776543 44444444443
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.74 E-value=2.5e-07 Score=92.74 Aligned_cols=186 Identities=9% Similarity=0.022 Sum_probs=147.3
Q ss_pred cchHHHHHHHHHHHHhCCCCchhHHHHHHHHhhhcCCHHHHHHHHccCCC--C-C-hhHHHHHHHHHHhcCChHHHHHHH
Q 040319 452 GFHEMGKQIHSYALKTGFSSDLGVANSMVSMYFKCCNMSNAIKAFNKMPS--H-D-IVSWNGLIAGHLLHRQGDEALAVW 527 (812)
Q Consensus 452 ~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~--~-~-~~~~~~li~~~~~~g~~~~A~~l~ 527 (812)
+..+.+..+++..++...+.+...+..++..+.+.|+++.|..+|+++.. | + ...|...+..+.+.|+.+.|.++|
T Consensus 78 ~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~ 157 (308)
T d2onda1 78 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIF 157 (308)
T ss_dssp HHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHH
Confidence 34577888888888765566777888899999999999999999998654 3 3 347999999999999999999999
Q ss_pred HHHHHCCCCCCH-HHHHHHHH-HhcCCCCchHHHHHHHHHHhhhhcCccCCcchHHHHHHHHhhcCChHHHHHHHHhCC-
Q 040319 528 SSMEKASIKPDA-ITFVLIIS-AYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLEEAEETINNMP- 604 (812)
Q Consensus 528 ~~m~~~g~~pd~-~t~~~ll~-a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~- 604 (812)
+++++. .|+. ..+..... -+.. .|+.+.|..+|+.+.+. .+.+...|..+++.+.+.|++++|..+|++..
T Consensus 158 ~~al~~--~~~~~~~~~~~a~~e~~~--~~~~~~a~~i~e~~l~~--~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~ 231 (308)
T d2onda1 158 KKARED--ARTRHHVYVTAALMEYYC--SKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLT 231 (308)
T ss_dssp HHHHTS--TTCCTHHHHHHHHHHHHT--SCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHh--CCCcHHHHHHHHHHHHHh--ccCHHHHHHHHHHHHHh--hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 999984 4433 23322222 2233 58899999999999873 23347889999999999999999999998842
Q ss_pred ---CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCC
Q 040319 605 ---FQPK--VSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDP 643 (812)
Q Consensus 605 ---~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~ 643 (812)
..|+ ..+|...+.--..+|+.+.+..+.+++.++-|++.
T Consensus 232 ~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~~ 275 (308)
T d2onda1 232 SGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEY 275 (308)
T ss_dssp SSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTT
T ss_pred hCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcccc
Confidence 3443 56899999998999999999999999999888754
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.70 E-value=1.4e-08 Score=99.18 Aligned_cols=89 Identities=13% Similarity=-0.032 Sum_probs=42.1
Q ss_pred HHHHHHhhhcCCHHHHHHHHccCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcCC
Q 040319 477 NSMVSMYFKCCNMSNAIKAFNKMPS---HDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDA-ITFVLIISAYRYT 552 (812)
Q Consensus 477 ~~Li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~ 552 (812)
..+..+|.+.|++++|...|++..+ .++.+|+.+...|...|++++|++.|+++++ +.|+. .++..+..++..
T Consensus 41 ~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~- 117 (259)
T d1xnfa_ 41 YERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLE--LDPTYNYAHLNRGIALYY- 117 (259)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCTHHHHHHHHHHHH-
T ss_pred HHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHH--HHhhhhhhHHHHHHHHHH-
Confidence 3344445555555555555544332 3344455555555555555555555555554 34433 334444444444
Q ss_pred CCchHHHHHHHHHHhhh
Q 040319 553 NLNLVDSCRKLFLSMKT 569 (812)
Q Consensus 553 ~~g~~~~a~~~~~~m~~ 569 (812)
.|++++|.+.|+...+
T Consensus 118 -~g~~~~A~~~~~~al~ 133 (259)
T d1xnfa_ 118 -GGRDKLAQDDLLAFYQ 133 (259)
T ss_dssp -TTCHHHHHHHHHHHHH
T ss_pred -HhhHHHHHHHHHHHHh
Confidence 4555555555554443
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.67 E-value=2.9e-07 Score=89.52 Aligned_cols=197 Identities=11% Similarity=-0.046 Sum_probs=127.1
Q ss_pred HHHHHHHhcCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHhhhcCCHHHHHHHHccCCC---CChhHHHHHHHHHHhc
Q 040319 441 LTSVLGVCGTLGFHEMGKQIHSYALKTGFSSDLGVANSMVSMYFKCCNMSNAIKAFNKMPS---HDIVSWNGLIAGHLLH 517 (812)
Q Consensus 441 ~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~ 517 (812)
+..+-..+.+.|+++.|...+..+++.. +.++.+++.+..+|.+.|++++|...|+++.+ .+..+|..+...|...
T Consensus 40 ~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 118 (259)
T d1xnfa_ 40 LYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYG 118 (259)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHHH
Confidence 3344455666667777777776666643 33677888899999999999999999988764 3467888999999999
Q ss_pred CChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCCcchHHHHHHHHhhcCC----
Q 040319 518 RQGDEALAVWSSMEKASIKPDAI-TFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGF---- 592 (812)
Q Consensus 518 g~~~~A~~l~~~m~~~g~~pd~~-t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~---- 592 (812)
|++++|++.|++.++ ..|+.. ....+..++.. .+..+....+...... ..+....++. +..+.....
T Consensus 119 g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~---~~~~~~~~~~-~~~~~~~~~~~~~ 190 (259)
T d1xnfa_ 119 GRDKLAQDDLLAFYQ--DDPNDPFRSLWLYLAEQK--LDEKQAKEVLKQHFEK---SDKEQWGWNI-VEFYLGNISEQTL 190 (259)
T ss_dssp TCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHH--HCHHHHHHHHHHHHHH---SCCCSTHHHH-HHHHTTSSCHHHH
T ss_pred hhHHHHHHHHHHHHh--hccccHHHHHHHHHHHHH--hhhHHHHHHHHHHhhc---cchhhhhhhH-HHHHHHHHHHHHH
Confidence 999999999999998 566543 22222223333 4544444444444443 2233333332 222222222
Q ss_pred hHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchH
Q 040319 593 LEEAEETINNMP-FQPK-VSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATY 646 (812)
Q Consensus 593 ~~~A~~~~~~m~-~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 646 (812)
.+.+...+.... ..|+ ..+|..+...+...|+.+.|...++++++.+|++...|
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 246 (259)
T d1xnfa_ 191 MERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEH 246 (259)
T ss_dssp HHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHH
T ss_pred HHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHH
Confidence 222222222111 2343 34677788889999999999999999999999875444
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=98.67 E-value=5.2e-07 Score=92.02 Aligned_cols=293 Identities=9% Similarity=-0.054 Sum_probs=178.2
Q ss_pred HHhccchhhhhHHHHHhhHHHhcCCCc----hhHHHHHHHHHHhcCCHHHHHHHHhcCCCC---CC----ceeeeHHHHH
Q 040319 342 NACGLIMEAKLSEQIHGFVMKFGLGSN----DCIEAALLDMLTRCGRMADAEKMFYRWPTD---RD----DSIIWTSMIC 410 (812)
Q Consensus 342 ~a~~~~~~~~~a~~i~~~~~~~g~~~~----~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~---~~----~~~~~~~li~ 410 (812)
..+...|+++.|.+++...++.....+ ..+++.+...|...|++++|...|++.... .+ ...++..+..
T Consensus 20 ~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 99 (366)
T d1hz4a_ 20 QVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE 99 (366)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHH
Confidence 345678999999999999987543322 246677888999999999999999875411 11 1223455566
Q ss_pred HHHHcCChhhHHHHHHHhcccCCCCCChhhHHHHHHHhcCccchHHHHHHHHHHHHhCCCCchhHHHHHHHHhhhcCCHH
Q 040319 411 GYARSGKPEHAILLFHQSQSEATVVPDEIALTSVLGVCGTLGFHEMGKQIHSYALKTGFSSDLGVANSMVSMYFKCCNMS 490 (812)
Q Consensus 411 ~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~ 490 (812)
.+...|++..|...+.+........+.. ........+..+...|...|+++
T Consensus 100 ~~~~~~~~~~a~~~~~~al~~~~~~~~~-----------------------------~~~~~~~~~~~la~~~~~~~~~~ 150 (366)
T d1hz4a_ 100 ILFAQGFLQTAWETQEKAFQLINEQHLE-----------------------------QLPMHEFLVRIRAQLLWAWARLD 150 (366)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCT-----------------------------TSTHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHhcccc-----------------------------hhhHHHHHHHHHHHHHHHhcchh
Confidence 7778888888888877654300000000 00001123344555666667777
Q ss_pred HHHHHHccCCC--------CChhHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCCCH--HHHHHHHHHhcCCCCch
Q 040319 491 NAIKAFNKMPS--------HDIVSWNGLIAGHLLHRQGDEALAVWSSMEKA----SIKPDA--ITFVLIISAYRYTNLNL 556 (812)
Q Consensus 491 ~A~~~f~~~~~--------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~pd~--~t~~~ll~a~~~~~~g~ 556 (812)
.|...+..... ....++..+...+...|+..++...+.+.... +..|.. ..+..+...+.. .|+
T Consensus 151 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 228 (366)
T d1hz4a_ 151 EAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQM--TGD 228 (366)
T ss_dssp HHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHH--TTC
T ss_pred hhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHh--ccc
Confidence 66666654321 12234455556666777777777777665441 111111 223333444555 778
Q ss_pred HHHHHHHHHHhhhhcCccC--CcchHHHHHHHHhhcCChHHHHHHHHhCC-------CCCC-HHHHHHHHHHHHhcCCHH
Q 040319 557 VDSCRKLFLSMKTIYNIEP--TSEHYASLVSVLGYWGFLEEAEETINNMP-------FQPK-VSVWRALLDSCRIRLNTT 626 (812)
Q Consensus 557 ~~~a~~~~~~m~~~~~~~p--~~~~y~~li~~l~~~g~~~~A~~~~~~m~-------~~p~-~~~~~~ll~~~~~~~~~~ 626 (812)
.++|...++...+...-.+ ....+..+..++...|++++|.+.+++.. ..|+ ..+|..+...+...|+.+
T Consensus 229 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 308 (366)
T d1hz4a_ 229 KAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKS 308 (366)
T ss_dssp HHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHH
Confidence 8888888877654211111 12345567778888888888888877642 3343 446777777888899999
Q ss_pred HHHHHHHHHHccCCCCC---------chHHHHHhhhhhCCCcchHHHH
Q 040319 627 IGKRVAKHILAMEPQDP---------ATYILVSNLYSSSGRWHNSELV 665 (812)
Q Consensus 627 ~a~~~~~~~~~~~p~~~---------~~~~~l~~~y~~~g~~~~a~~~ 665 (812)
+|...+++++++.+... .....+...+...|+.+++.+-
T Consensus 309 ~A~~~l~~Al~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~e~e~~ 356 (366)
T d1hz4a_ 309 DAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQH 356 (366)
T ss_dssp HHHHHHHHHHHHHHHHCCCHHHHTTHHHHHHHHHHHHHTTCSCHHHHH
T ss_pred HHHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHhcCCChHHHHH
Confidence 99999999888754311 1233344556667778777653
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.60 E-value=8.4e-07 Score=88.71 Aligned_cols=180 Identities=8% Similarity=0.004 Sum_probs=143.0
Q ss_pred cCCHHHHHHHHccCC----CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHhcCCCCchHHH
Q 040319 486 CCNMSNAIKAFNKMP----SHDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPD--AITFVLIISAYRYTNLNLVDS 559 (812)
Q Consensus 486 ~g~~~~A~~~f~~~~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd--~~t~~~ll~a~~~~~~g~~~~ 559 (812)
.+..++|..+|++.. ..+...|...+..+...|+.++|..+|+++++ ..|. ...|...+..+.. .|.+++
T Consensus 77 ~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~--~~~~~~~~~w~~~~~~~~~--~~~~~~ 152 (308)
T d2onda1 77 KLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARR--AEGIKS 152 (308)
T ss_dssp HHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--SSSSCTHHHHHHHHHHHHH--HHCHHH
T ss_pred ccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH--HhcCChHHHHHHHHHHHHH--cCChHH
Confidence 345678888887643 24567889899999999999999999999998 5554 3467888888888 899999
Q ss_pred HHHHHHHhhhhcCccC-CcchHHHHHHHH-hhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 040319 560 CRKLFLSMKTIYNIEP-TSEHYASLVSVL-GYWGFLEEAEETINNMP--FQPKVSVWRALLDSCRIRLNTTIGKRVAKHI 635 (812)
Q Consensus 560 a~~~~~~m~~~~~~~p-~~~~y~~li~~l-~~~g~~~~A~~~~~~m~--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 635 (812)
|.++|+.+.+. .| +...|...+... ...|+.+.|..+++.+. .+.+...|..++......|+++.|+.+++++
T Consensus 153 ar~i~~~al~~---~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~a 229 (308)
T d2onda1 153 GRMIFKKARED---ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERV 229 (308)
T ss_dssp HHHHHHHHHTS---TTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHh---CCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 99999998762 33 344555555443 34688999999999865 3446889999999999999999999999999
Q ss_pred HccCCCCCc----hHHHHHhhhhhCCCcchHHHHHHHHHhC
Q 040319 636 LAMEPQDPA----TYILVSNLYSSSGRWHNSELVREDMREK 672 (812)
Q Consensus 636 ~~~~p~~~~----~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 672 (812)
++..|.++. .+......-...|+.+.+.++.+++.+.
T Consensus 230 i~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~ 270 (308)
T d2onda1 230 LTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp HHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 998776554 5667777778889999999999988653
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.54 E-value=5.6e-09 Score=106.66 Aligned_cols=244 Identities=9% Similarity=-0.034 Sum_probs=169.6
Q ss_pred HcCChhhHHHHHHHhcccCCCCCChhhH----HHHHHHhc-------CccchHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 040319 414 RSGKPEHAILLFHQSQSEATVVPDEIAL----TSVLGVCG-------TLGFHEMGKQIHSYALKTGFSSDLGVANSMVSM 482 (812)
Q Consensus 414 ~~g~~~~A~~~~~~m~~~~g~~p~~~t~----~~ll~a~~-------~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~ 482 (812)
..+..++|++++.+... ..|+..+. ..++.... ..+.++.+..++..+++.. +.+...+..+...
T Consensus 41 ~~~~~~~al~~~~~~l~---~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-pk~~~~~~~~~~~ 116 (334)
T d1dcea1 41 AGELDESVLELTSQILG---ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWL 116 (334)
T ss_dssp TTCCSHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHH---HCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-CCcHHHHHHhhHH
Confidence 33445899999999987 77887653 12223222 3345777888888888754 3355566666555
Q ss_pred hhhcC--CHHHHHHHHccCCC---CChhHHHHH-HHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcCCCCc
Q 040319 483 YFKCC--NMSNAIKAFNKMPS---HDIVSWNGL-IAGHLLHRQGDEALAVWSSMEKASIKPDA-ITFVLIISAYRYTNLN 555 (812)
Q Consensus 483 y~k~g--~~~~A~~~f~~~~~---~~~~~~~~l-i~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~~~g 555 (812)
+...+ ++++|...++++.+ ++...|..+ ...+...|.+++|+..++++++ ..|+. ..+..+..++.. .|
T Consensus 117 ~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~--~~p~~~~a~~~l~~~~~~--~~ 192 (334)
T d1dcea1 117 LSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLIT--RNFSNYSSWHYRSCLLPQ--LH 192 (334)
T ss_dssp HHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTT--TTCCCHHHHHHHHHHHHH--HS
T ss_pred HHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHH--hc
Confidence 55544 58889888887654 456666544 4667778999999999998888 66765 556666666666 67
Q ss_pred hHHHHHHHHHHhhhhcCccCCcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 040319 556 LVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLEEAEETINNMP-FQP-KVSVWRALLDSCRIRLNTTIGKRVAK 633 (812)
Q Consensus 556 ~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~ 633 (812)
++++|...++...+ +.|+ .......+...+..++|...+.+.. ..| +...+..+...+...++.+.|...+.
T Consensus 193 ~~~~A~~~~~~~~~---~~~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 266 (334)
T d1dcea1 193 PQPDSGPQGRLPEN---VLLK---ELELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQ 266 (334)
T ss_dssp CCCCSSSCCSSCHH---HHHH---HHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhHH---hHHH---HHHHHHHHHHhcchhHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhHHHHHHHHH
Confidence 76666555444332 1121 1123334455666777777666532 233 45556667777888899999999999
Q ss_pred HHHccCCCCCchHHHHHhhhhhCCCcchHHHHHHHHHh
Q 040319 634 HILAMEPQDPATYILVSNLYSSSGRWHNSELVREDMRE 671 (812)
Q Consensus 634 ~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 671 (812)
++++.+|++..++..++.+|...|++++|.+.+++..+
T Consensus 267 ~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ 304 (334)
T d1dcea1 267 ELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKA 304 (334)
T ss_dssp HHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHH
T ss_pred HHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998854
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.41 E-value=3.1e-07 Score=85.42 Aligned_cols=97 Identities=7% Similarity=-0.044 Sum_probs=70.0
Q ss_pred CCcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhh
Q 040319 575 PTSEHYASLVSVLGYWGFLEEAEETINNMP-FQP-KVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNL 652 (812)
Q Consensus 575 p~~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 652 (812)
|+...+...+..|.+.|++++|+..|++.. ..| ++.+|..+..++...|+++.|...++++++++|+++.+|..++.+
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~ 81 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 81 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHH
Confidence 455555566677777777777777776643 444 566777777777777788888888888877778777777778888
Q ss_pred hhhCCCcchHHHHHHHHHh
Q 040319 653 YSSSGRWHNSELVREDMRE 671 (812)
Q Consensus 653 y~~~g~~~~a~~~~~~m~~ 671 (812)
|...|++++|...+++..+
T Consensus 82 ~~~l~~~~~A~~~~~~al~ 100 (201)
T d2c2la1 82 QLEMESYDEAIANLQRAYS 100 (201)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH
Confidence 8888888887777776543
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.38 E-value=1.8e-06 Score=79.21 Aligned_cols=139 Identities=9% Similarity=-0.010 Sum_probs=103.9
Q ss_pred HHHhhhcCCHHHHHHHHccCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcCCCCchHH
Q 040319 480 VSMYFKCCNMSNAIKAFNKMPSHDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDA-ITFVLIISAYRYTNLNLVD 558 (812)
Q Consensus 480 i~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~~~g~~~ 558 (812)
...+...|+++.|.+.|+++..|+...|..+...|...|++++|++.|++.++ +.|+. ..|..+..++.+ .|+++
T Consensus 12 g~~~~~~~d~~~Al~~~~~i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~--ldp~~~~a~~~~g~~~~~--~g~~~ 87 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSIN--RDKHLAVAYFQRGMLYYQ--TEKYD 87 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHH--TTCHH
T ss_pred HHHHHHCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHH--HhhhhhhhHHHHHHHHHh--hccHH
Confidence 45678899999999999999999999999999999999999999999999999 77876 667777778888 99999
Q ss_pred HHHHHHHHhhhhcCccCCcc-hHHHHHHHHhhcCChHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 040319 559 SCRKLFLSMKTIYNIEPTSE-HYASLVSVLGYWGFLEEAEETINNMPFQPK-VSVWRALLDSCRIRLNTTIGKRVAKHIL 636 (812)
Q Consensus 559 ~a~~~~~~m~~~~~~~p~~~-~y~~li~~l~~~g~~~~A~~~~~~m~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 636 (812)
+|.+.|+..... .+++.. .|. ..| +..+++ ..++..+..++...|+.+.|...+++++
T Consensus 88 ~A~~~~~kAl~~--~~~n~~~~~~-------~~~-----------~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~ 147 (192)
T d1hh8a_ 88 LAIKDLKEALIQ--LRGNQLIDYK-------ILG-----------LQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALAT 147 (192)
T ss_dssp HHHHHHHHHHHT--TTTCSEEECG-------GGT-----------BCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--CccCchHHHH-------Hhh-----------hhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 999999887641 111110 000 000 001111 2345566667788888888888888888
Q ss_pred ccCCCC
Q 040319 637 AMEPQD 642 (812)
Q Consensus 637 ~~~p~~ 642 (812)
++.|+.
T Consensus 148 ~~~~~~ 153 (192)
T d1hh8a_ 148 SMKSEP 153 (192)
T ss_dssp TTCCSG
T ss_pred hcCCCc
Confidence 888764
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.35 E-value=7.7e-07 Score=74.18 Aligned_cols=88 Identities=8% Similarity=0.025 Sum_probs=72.9
Q ss_pred HHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCCcch
Q 040319 584 VSVLGYWGFLEEAEETINNMP-FQP-KVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWHN 661 (812)
Q Consensus 584 i~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~ 661 (812)
...+.+.|++++|+..|++.. ..| +...|..+..++...|+.+.|+..++++++++|+++.+|..++.+|...|++++
T Consensus 10 g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~ 89 (117)
T d1elwa_ 10 GNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEE 89 (117)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCHHH
Confidence 456677888888888888754 445 677888888888888999999999999999999988889999999999999999
Q ss_pred HHHHHHHHHh
Q 040319 662 SELVREDMRE 671 (812)
Q Consensus 662 a~~~~~~m~~ 671 (812)
|...+++..+
T Consensus 90 A~~~~~~a~~ 99 (117)
T d1elwa_ 90 AKRTYEEGLK 99 (117)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHH
Confidence 9888888754
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.33 E-value=3.3e-07 Score=75.75 Aligned_cols=90 Identities=12% Similarity=0.031 Sum_probs=81.6
Q ss_pred HHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCC
Q 040319 580 YASLVSVLGYWGFLEEAEETINNMP-FQP-KVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSG 657 (812)
Q Consensus 580 y~~li~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g 657 (812)
+-.+...+.+.|++++|+..+++.. ..| +..+|..+..++...|+.+.|+..++++++++|+++.++..|+.+|...|
T Consensus 19 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g 98 (112)
T d1hxia_ 19 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH 98 (112)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCC
Confidence 3456778889999999999999965 566 58899999999999999999999999999999999999999999999999
Q ss_pred CcchHHHHHHHH
Q 040319 658 RWHNSELVREDM 669 (812)
Q Consensus 658 ~~~~a~~~~~~m 669 (812)
++++|.+.+++.
T Consensus 99 ~~~~A~~~l~~~ 110 (112)
T d1hxia_ 99 NANAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 999999998864
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.31 E-value=2.8e-06 Score=77.80 Aligned_cols=114 Identities=10% Similarity=0.026 Sum_probs=86.3
Q ss_pred CchHHHHHHHHHHhhhhcCccCCcchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHH
Q 040319 554 LNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLEEAEETINNMP-FQP-KVSVWRALLDSCRIRLNTTIGKRV 631 (812)
Q Consensus 554 ~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~ 631 (812)
.|++++|++.|..+. +|+...|..+..+|...|++++|++.|++.. +.| ++..|..+..++...|+.+.|...
T Consensus 18 ~~d~~~Al~~~~~i~-----~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~~A~~~ 92 (192)
T d1hh8a_ 18 KKDWKGALDAFSAVQ-----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKD 92 (192)
T ss_dssp TTCHHHHHHHHHTSS-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCCHHHHHHHHHhcC-----CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccHHHHHHH
Confidence 677777777776543 3556667777777777777777777777744 455 577888888888888999999888
Q ss_pred HHHHHccCCCCC----------------chHHHHHhhhhhCCCcchHHHHHHHHHhC
Q 040319 632 AKHILAMEPQDP----------------ATYILVSNLYSSSGRWHNSELVREDMREK 672 (812)
Q Consensus 632 ~~~~~~~~p~~~----------------~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 672 (812)
++++++..|.+. ..+..++.+|.+.|++++|.+.++.....
T Consensus 93 ~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~ 149 (192)
T d1hh8a_ 93 LKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 149 (192)
T ss_dssp HHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 888887666543 34667899999999999999998877543
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.28 E-value=2.3e-06 Score=71.13 Aligned_cols=98 Identities=13% Similarity=0.092 Sum_probs=79.1
Q ss_pred CchHHHHHHHHHHhhhhcCccCC-cchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHH
Q 040319 554 LNLVDSCRKLFLSMKTIYNIEPT-SEHYASLVSVLGYWGFLEEAEETINNMP-FQP-KVSVWRALLDSCRIRLNTTIGKR 630 (812)
Q Consensus 554 ~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~ 630 (812)
.|++++|+..|+...+ +.|+ ...|..+..+|...|++++|++.+++.. +.| +...|..+..++...|+.+.|+.
T Consensus 16 ~g~~~eAi~~~~~al~---~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~ 92 (117)
T d1elwa_ 16 VGNIDDALQCYSEAIK---LDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKR 92 (117)
T ss_dssp TTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCCHHHHHHHHHHHHh---cCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCHHHHHH
Confidence 6777777777777765 2343 6677778888888888888888887754 445 67889999999999999999999
Q ss_pred HHHHHHccCCCCCchHHHHHhhhh
Q 040319 631 VAKHILAMEPQDPATYILVSNLYS 654 (812)
Q Consensus 631 ~~~~~~~~~p~~~~~~~~l~~~y~ 654 (812)
.++++++++|+++.++..+.++-+
T Consensus 93 ~~~~a~~~~p~~~~~~~~l~~l~~ 116 (117)
T d1elwa_ 93 TYEEGLKHEANNPQLKEGLQNMEA 116 (117)
T ss_dssp HHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHhC
Confidence 999999999999999888887654
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.21 E-value=3.9e-06 Score=74.30 Aligned_cols=89 Identities=8% Similarity=-0.083 Sum_probs=78.8
Q ss_pred HHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCCcc
Q 040319 583 LVSVLGYWGFLEEAEETINNMP-FQP-KVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWH 660 (812)
Q Consensus 583 li~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~ 660 (812)
....|.+.|++++|+..|++.. ..| +...|..+...+...|+.+.|...++++++++|+++.+|..++.+|...|+++
T Consensus 16 ~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~~~ 95 (159)
T d1a17a_ 16 QANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFR 95 (159)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCCHH
Confidence 3556778999999999998865 556 67888888889999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHh
Q 040319 661 NSELVREDMRE 671 (812)
Q Consensus 661 ~a~~~~~~m~~ 671 (812)
+|.+.+++...
T Consensus 96 eA~~~~~~a~~ 106 (159)
T d1a17a_ 96 AALRDYETVVK 106 (159)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988754
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.18 E-value=3.6e-06 Score=83.12 Aligned_cols=191 Identities=7% Similarity=-0.051 Sum_probs=127.6
Q ss_pred HHHHHHHhhhcCCHHHHHHHHccCCC-----CC----hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCC---CCC--HHH
Q 040319 476 ANSMVSMYFKCCNMSNAIKAFNKMPS-----HD----IVSWNGLIAGHLLHRQGDEALAVWSSMEKASI---KPD--AIT 541 (812)
Q Consensus 476 ~~~Li~~y~k~g~~~~A~~~f~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~---~pd--~~t 541 (812)
|.-..++|..+|++++|...|.+..+ .+ ..+|+.+...|.+.|++++|++.+++..+.-. .+. ..+
T Consensus 40 y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 119 (290)
T d1qqea_ 40 CVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANF 119 (290)
T ss_dssp HHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHH
Confidence 33446678889999999888876643 22 35788899999999999999999998765211 111 244
Q ss_pred HHHHHHHh-cCCCCchHHHHHHHHHHhhhhcCccCC----cchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-------C
Q 040319 542 FVLIISAY-RYTNLNLVDSCRKLFLSMKTIYNIEPT----SEHYASLVSVLGYWGFLEEAEETINNMP-FQP-------K 608 (812)
Q Consensus 542 ~~~ll~a~-~~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p-------~ 608 (812)
+..+...| .. .|++++|.+.++...+-.....+ ..+|..++..+...|++++|++.+++.. ..| .
T Consensus 120 ~~~l~~~~~~~--~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~ 197 (290)
T d1qqea_ 120 KFELGEILEND--LHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWS 197 (290)
T ss_dssp HHHHHHHHHHT--TCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGG
T ss_pred HHHHHHhHhhH--HHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhh
Confidence 55555555 34 69999999999887642211111 4568889999999999999999998843 211 1
Q ss_pred H-HHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCch-----HHHHHhhhhh--CCCcchHHHHHHH
Q 040319 609 V-SVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPAT-----YILVSNLYSS--SGRWHNSELVRED 668 (812)
Q Consensus 609 ~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~-----~~~l~~~y~~--~g~~~~a~~~~~~ 668 (812)
. ..+...+-.+...|+.+.|...+++..+++|..+.. ...|+..|.. .+++++|...++.
T Consensus 198 ~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~ 265 (290)
T d1qqea_ 198 LKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDN 265 (290)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 1 223344445667899999999999999999864432 2334445544 3457787777654
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.14 E-value=7.2e-06 Score=72.47 Aligned_cols=109 Identities=7% Similarity=-0.015 Sum_probs=69.9
Q ss_pred CchHHHHHHHHHHhhhhcCccCC-cchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHH
Q 040319 554 LNLVDSCRKLFLSMKTIYNIEPT-SEHYASLVSVLGYWGFLEEAEETINNMP-FQP-KVSVWRALLDSCRIRLNTTIGKR 630 (812)
Q Consensus 554 ~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~ 630 (812)
.|++++|...|+...+ +.|+ ...|..+..+|...|++++|++.+++.. +.| +..+|..+..++...|+.++|..
T Consensus 23 ~~~y~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~~~eA~~ 99 (159)
T d1a17a_ 23 AKDYENAIKFYSQAIE---LNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALR 99 (159)
T ss_dssp TTCHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCCHHHHHHHhhhccc---cchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCCHHHHHH
Confidence 4444444444444443 1232 4445555555555555666655555543 345 56788888888899999999999
Q ss_pred HHHHHHccCCCCCchHHHHHhhhh--hCCCcchHHHH
Q 040319 631 VAKHILAMEPQDPATYILVSNLYS--SSGRWHNSELV 665 (812)
Q Consensus 631 ~~~~~~~~~p~~~~~~~~l~~~y~--~~g~~~~a~~~ 665 (812)
.++++++++|+++..+..+..+.. ..+.+++|...
T Consensus 100 ~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~ 136 (159)
T d1a17a_ 100 DYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAG 136 (159)
T ss_dssp HHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999888877766543 33446666543
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.12 E-value=3.3e-06 Score=70.40 Aligned_cols=105 Identities=11% Similarity=-0.018 Sum_probs=75.1
Q ss_pred HHHHhcCCCCchHHHHHHHHHHhhhhcCccC-CcchHHHHHHHHhhcCCh---HHHHHHHHhCC-CCCCH---HHHHHHH
Q 040319 545 IISAYRYTNLNLVDSCRKLFLSMKTIYNIEP-TSEHYASLVSVLGYWGFL---EEAEETINNMP-FQPKV---SVWRALL 616 (812)
Q Consensus 545 ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~li~~l~~~g~~---~~A~~~~~~m~-~~p~~---~~~~~ll 616 (812)
+++.+.. .+++++|.+.|+.... +.| ++.++..+..+|.+.++. ++|+++++++. ..|+. .+|..|.
T Consensus 5 l~n~~~~--~~~l~~Ae~~Y~~aL~---~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg 79 (122)
T d1nzna_ 5 VLNELVS--VEDLLKFEKKFQSEKA---AGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLA 79 (122)
T ss_dssp HHHHHHH--HHHHHHHHHHHHHHHH---HSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHH
T ss_pred HHHHhcC--HHHHHHHHHHHHHHHh---hCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHH
Confidence 4444445 6777777777777665 334 356777777777665544 45777777754 34433 3677888
Q ss_pred HHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhh
Q 040319 617 DSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYS 654 (812)
Q Consensus 617 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~ 654 (812)
.+|...|+++.|+..++++++++|++..+...+..+..
T Consensus 80 ~~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~~ 117 (122)
T d1nzna_ 80 VGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDK 117 (122)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHHH
Confidence 89999999999999999999999999887777665543
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.10 E-value=2.6e-06 Score=78.82 Aligned_cols=114 Identities=8% Similarity=-0.146 Sum_probs=71.3
Q ss_pred CCHHHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCC-cchHHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHH
Q 040319 537 PDAITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPT-SEHYASLVSVLGYWGFLEEAEETINNMP-FQP-KVSVWR 613 (812)
Q Consensus 537 pd~~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~ 613 (812)
|+...+......+.. .|++++|+..|+...+ +.|+ ...|..+..+|.+.|++++|+..+++.. +.| +..+|.
T Consensus 2 ~~a~~l~~~Gn~~~~--~g~~~~Ai~~~~kal~---~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~ 76 (201)
T d2c2la1 2 PSAQELKEQGNRLFV--GRKYPEAAACYGRAIT---RNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHF 76 (201)
T ss_dssp CCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHH---HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHH
T ss_pred hhHHHHHHHHHHHHH--cCCHHHHHHHHHHHHH---hCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHH
Confidence 333334444444444 5555555555555543 2232 4556666666666777777777666643 556 466788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhh
Q 040319 614 ALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSS 655 (812)
Q Consensus 614 ~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~ 655 (812)
.+..++...|+++.|...++++++++|++...+...++.+..
T Consensus 77 ~lg~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~l~ 118 (201)
T d2c2la1 77 FLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALR 118 (201)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 888888888888888888888888888766555444444443
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.01 E-value=2.4e-05 Score=77.00 Aligned_cols=165 Identities=7% Similarity=-0.085 Sum_probs=97.4
Q ss_pred hHHHHHHHHhhhcCCHHHHHHHHccCCC-----CC----hhHHHHHHHHHH-hcCChHHHHHHHHHHHHC----CCCCCH
Q 040319 474 GVANSMVSMYFKCCNMSNAIKAFNKMPS-----HD----IVSWNGLIAGHL-LHRQGDEALAVWSSMEKA----SIKPDA 539 (812)
Q Consensus 474 ~~~~~Li~~y~k~g~~~~A~~~f~~~~~-----~~----~~~~~~li~~~~-~~g~~~~A~~l~~~m~~~----g~~pd~ 539 (812)
.++..+..+|.+.|++++|...+++..+ .+ ...+..+...|. ..|++++|++.|++..+. +..+..
T Consensus 78 ~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~ 157 (290)
T d1qqea_ 78 NTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALS 157 (290)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhh
Confidence 3455556666666666666666654432 11 234555555564 358888888888877541 212221
Q ss_pred -HHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCC-----cchHHHHHHHHhhcCChHHHHHHHHhCC-CCCC----
Q 040319 540 -ITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPT-----SEHYASLVSVLGYWGFLEEAEETINNMP-FQPK---- 608 (812)
Q Consensus 540 -~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p~---- 608 (812)
.++..+...+.. .|++++|.++|+.+.....-.+. ...|..++..+...|+++.|...+++.. +.|+
T Consensus 158 ~~~~~~la~~~~~--~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~s 235 (290)
T d1qqea_ 158 NKCFIKCADLKAL--DGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADS 235 (290)
T ss_dssp HHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-------
T ss_pred hhHHHHHHHHHHH--cChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccch
Confidence 445666667777 88888888888887652211111 1234455666677888999988888864 3332
Q ss_pred --HHHHHHHHHHHHhc--CCHHHHHHHHHHHHccCC
Q 040319 609 --VSVWRALLDSCRIR--LNTTIGKRVAKHILAMEP 640 (812)
Q Consensus 609 --~~~~~~ll~~~~~~--~~~~~a~~~~~~~~~~~p 640 (812)
......++.++... +.++.|...++++.+++|
T Consensus 236 re~~~l~~l~~a~~~~d~e~~~eai~~y~~~~~lD~ 271 (290)
T d1qqea_ 236 RESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDK 271 (290)
T ss_dssp --HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCH
Confidence 22445566665542 346677776666666654
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.91 E-value=1.7e-05 Score=70.79 Aligned_cols=134 Identities=8% Similarity=-0.051 Sum_probs=100.8
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCCcchHHHHH
Q 040319 505 VSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDAITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYASLV 584 (812)
Q Consensus 505 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li 584 (812)
..+......+.+.|++++|+..|++.++ +.|.... . ..... .....+. ...|..+.
T Consensus 14 ~~l~~~G~~~~~~~~~~~Ai~~y~~al~--~~~~~~~---------~--~~~~~---~~~~~~~--------~~~~~nla 69 (170)
T d1p5qa1 14 TIVKERGTVYFKEGKYKQALLQYKKIVS--WLEYESS---------F--SNEEA---QKAQALR--------LASHLNLA 69 (170)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHH--HTTTCCC---------C--CSHHH---HHHHHHH--------HHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH--Hhhhccc---------c--chHHH---hhhchhH--------HHHHHHHH
Confidence 4455667788899999999999999887 3332100 0 11111 1111111 23577788
Q ss_pred HHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCCcchH
Q 040319 585 SVLGYWGFLEEAEETINNMP-FQP-KVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWHNS 662 (812)
Q Consensus 585 ~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a 662 (812)
.+|.+.|++++|+..+++.. +.| ++.+|..+..++...|+++.|...++++++++|+|+.+...+..++.+.+...+.
T Consensus 70 ~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~ 149 (170)
T d1p5qa1 70 MCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR 149 (170)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998855 566 6889999999999999999999999999999999999999999988777665544
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.88 E-value=4.7e-05 Score=67.80 Aligned_cols=63 Identities=3% Similarity=-0.094 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCCcchHHHHHHHHHhC
Q 040319 610 SVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWHNSELVREDMREK 672 (812)
Q Consensus 610 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 672 (812)
.+|..+..+|.+.|+++.|+..++++++++|+++.++..++.+|...|++++|...+++..+.
T Consensus 63 ~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 125 (170)
T d1p5qa1 63 ASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL 125 (170)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 456667778889999999999999999999999999999999999999999999999998653
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.87 E-value=2.6e-05 Score=69.51 Aligned_cols=128 Identities=7% Similarity=-0.035 Sum_probs=92.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccC-CcchHHHHHHH
Q 040319 508 NGLIAGHLLHRQGDEALAVWSSMEKASIKPDAITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEP-TSEHYASLVSV 586 (812)
Q Consensus 508 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~li~~ 586 (812)
......+...|++++|++.|+++++ ..|.. .+... ..+. ..+.| ....|..+..+
T Consensus 31 ~~~~~~~~~~~~y~~Ai~~y~~al~--~~~~~-------~~~~~-----~~~~----------~~~~~~~~~~~~nla~~ 86 (169)
T d1ihga1 31 KNIGNTFFKSQNWEMAIKKYTKVLR--YVEGS-------RAAAE-----DADG----------AKLQPVALSCVLNIGAC 86 (169)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH--HHHHH-------HHHSC-----HHHH----------GGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH--hhhhh-------hhhhh-----hHHH----------HHhChhhHHHHHHHHHH
Confidence 3445566778888888888887765 11110 01100 0110 01122 35567788899
Q ss_pred HhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCCc
Q 040319 587 LGYWGFLEEAEETINNMP-FQP-KVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRW 659 (812)
Q Consensus 587 l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~ 659 (812)
+.+.|++++|+..+++.. +.| ++.+|..+..++...|+++.|...++++++++|+++.++..|..++.+....
T Consensus 87 ~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~~~ 161 (169)
T d1ihga1 87 KLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQ 161 (169)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999998854 666 5789999999999999999999999999999999999988888877654433
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.83 E-value=6e-05 Score=65.68 Aligned_cols=62 Identities=8% Similarity=-0.055 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCCcchHHHHHHHHHh
Q 040319 610 SVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWHNSELVREDMRE 671 (812)
Q Consensus 610 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 671 (812)
.++..+..++.+.|+.+.|...++++++++|+++.+|..++.+|...|++++|...+++..+
T Consensus 68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~ 129 (153)
T d2fbna1 68 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAAS 129 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHH
Confidence 35666777888999999999999999999999999999999999999999999999988754
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.82 E-value=1.4e-05 Score=66.47 Aligned_cols=92 Identities=7% Similarity=-0.083 Sum_probs=76.8
Q ss_pred HHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhc---CCHHHHHHHHHHHHccCCCC--CchHHHHHhh
Q 040319 580 YASLVSVLGYWGFLEEAEETINNMP-FQP-KVSVWRALLDSCRIR---LNTTIGKRVAKHILAMEPQD--PATYILVSNL 652 (812)
Q Consensus 580 y~~li~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~---~~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~ 652 (812)
...+++.+...+++++|++.|++.. ..| ++.++..+..++.+. ++.++|+..++++++.+|.+ ..++..|+.+
T Consensus 2 ~~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~ 81 (122)
T d1nzna_ 2 MEAVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG 81 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence 4567788889999999999999965 445 678888888887654 45667999999999998864 3478899999
Q ss_pred hhhCCCcchHHHHHHHHHh
Q 040319 653 YSSSGRWHNSELVREDMRE 671 (812)
Q Consensus 653 y~~~g~~~~a~~~~~~m~~ 671 (812)
|.+.|++++|.+.+++..+
T Consensus 82 y~~~g~~~~A~~~~~~aL~ 100 (122)
T d1nzna_ 82 NYRLKEYEKALKYVRGLLQ 100 (122)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHH
Confidence 9999999999999999855
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.81 E-value=2e-05 Score=66.44 Aligned_cols=91 Identities=7% Similarity=0.041 Sum_probs=76.7
Q ss_pred HHHHHHHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCc-------hHHHHH
Q 040319 580 YASLVSVLGYWGFLEEAEETINNMP-FQP-KVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPA-------TYILVS 650 (812)
Q Consensus 580 y~~li~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~-------~~~~l~ 650 (812)
+-.+.+.+.+.|++++|++.|++.. +.| +..+|..+..++...|+++.|...++++++++|+++. +|..++
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg 86 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG 86 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Confidence 3456778889999999999998865 455 6888999999999999999999999999999998776 455677
Q ss_pred hhhhhCCCcchHHHHHHHHH
Q 040319 651 NLYSSSGRWHNSELVREDMR 670 (812)
Q Consensus 651 ~~y~~~g~~~~a~~~~~~m~ 670 (812)
.++...+++++|.+.+++..
T Consensus 87 ~~~~~~~~~~~A~~~~~kal 106 (128)
T d1elra_ 87 NSYFKEEKYKDAIHFYNKSL 106 (128)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHH
Confidence 78889999999999987753
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.77 E-value=5.8e-05 Score=65.77 Aligned_cols=127 Identities=6% Similarity=-0.161 Sum_probs=94.3
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCCcchHHHHH
Q 040319 505 VSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDAITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYASLV 584 (812)
Q Consensus 505 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li 584 (812)
..+......+.+.|++.+|+..|++.+. +.|.. . ...-......... .....|+.+.
T Consensus 18 ~~~~~~G~~~f~~~~y~~A~~~Y~~al~--~~~~~-----------~--~~~~~~~~~~~~~--------~~~~~~~Nla 74 (153)
T d2fbna1 18 FDIKEEGNEFFKKNEINEAIVKYKEALD--FFIHT-----------E--EWDDQILLDKKKN--------IEISCNLNLA 74 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTTTC-----------T--TCCCHHHHHHHHH--------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCcch-----------h--hhhhHHHHHhhhh--------HHHHHHhhHH
Confidence 4556667788899999999999999887 33321 0 0000001111111 1234678899
Q ss_pred HHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhh
Q 040319 585 SVLGYWGFLEEAEETINNMP-FQP-KVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYS 654 (812)
Q Consensus 585 ~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~ 654 (812)
.+|.+.|++++|++.+++.. ..| +..+|..+..++...|+++.|...++++++++|+|+.+...+..+..
T Consensus 75 ~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~ 146 (153)
T d2fbna1 75 TCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVN 146 (153)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 99999999999999999854 566 68899999999999999999999999999999999988877766543
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=97.73 E-value=0.0024 Score=60.95 Aligned_cols=181 Identities=9% Similarity=-0.108 Sum_probs=113.3
Q ss_pred CCHHHHHHHHccCCC-CChhHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCchHHHHH
Q 040319 487 CNMSNAIKAFNKMPS-HDIVSWNGLIAGHLL----HRQGDEALAVWSSMEKASIKPDAITFVLIISAYRYTNLNLVDSCR 561 (812)
Q Consensus 487 g~~~~A~~~f~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~g~~~~a~ 561 (812)
.+...|...+..... .+...+..|...+.. ..+.+.|...+++..+.|..+..... ................+.
T Consensus 52 ~d~~~a~~~~~~a~~~~~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~l-~~~~~~~~~~~~~~~~a~ 130 (265)
T d1ouva_ 52 KNLKKAASFYAKACDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASL-GGIYHDGKVVTRDFKKAV 130 (265)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHH-HHHHHHCSSSCCCHHHHH
T ss_pred hhHHHHHHhhcccccccccchhhccccccccccccchhhHHHHHHHhhhhhhhhhhHHHhh-cccccCCCcccchhHHHH
Confidence 345555555544332 233444444444433 35667888888888776533222222 122222221255677777
Q ss_pred HHHHHhhhhcCccCCcchHHHHHHHHhh----cCChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHH
Q 040319 562 KLFLSMKTIYNIEPTSEHYASLVSVLGY----WGFLEEAEETINNMPFQPKVSVWRALLDSCRI----RLNTTIGKRVAK 633 (812)
Q Consensus 562 ~~~~~m~~~~~~~p~~~~y~~li~~l~~----~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~ 633 (812)
..+..... ..+...+..|...+.. ......+...++...-..+......|...+.. ..|.+.|...++
T Consensus 131 ~~~~~~~~----~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~ 206 (265)
T d1ouva_ 131 EYFTKACD----LNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYS 206 (265)
T ss_dssp HHHHHHHH----TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHH
T ss_pred HHhhhhhc----ccccchhhhhhhhhccCCCcccccccchhhhhccccccccccccchhhhcccCcccccchhhhhhhHh
Confidence 77766554 3456677777777765 34566777776665433456666666555554 568999999999
Q ss_pred HHHccCCCCCchHHHHHhhhhh----CCCcchHHHHHHHHHhCCC
Q 040319 634 HILAMEPQDPATYILVSNLYSS----SGRWHNSELVREDMREKGF 674 (812)
Q Consensus 634 ~~~~~~p~~~~~~~~l~~~y~~----~g~~~~a~~~~~~m~~~g~ 674 (812)
++.+.+ ++.++..|+.+|.. ..+.++|.+.+++.-+.|.
T Consensus 207 ~aa~~g--~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~ 249 (265)
T d1ouva_ 207 KACELE--NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 249 (265)
T ss_dssp HHHHTT--CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred hhhccc--CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcC
Confidence 998875 57889999999986 3489999999999877664
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.73 E-value=6.9e-05 Score=66.62 Aligned_cols=64 Identities=6% Similarity=-0.035 Sum_probs=59.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCCcchHHHHHHHHHh
Q 040319 608 KVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWHNSELVREDMRE 671 (812)
Q Consensus 608 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 671 (812)
+...|..+..++.+.|+.+.|...++++++++|+++.+|..++.+|...|++++|.+.+++..+
T Consensus 76 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~ 139 (169)
T d1ihga1 76 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQE 139 (169)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHH
Confidence 4557777888899999999999999999999999999999999999999999999999998865
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.67 E-value=0.024 Score=55.25 Aligned_cols=181 Identities=14% Similarity=0.147 Sum_probs=107.1
Q ss_pred CCccchHHHHHHHHccCChhhHHHHHhcCCCCChhhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 040319 31 QDTRFGNPLISAYLKLGHVADAYKIFYGLSSPNVVSFTSLISGLAKLGREEEAIELFFRMRSEGIVPNEHSFVAILTACI 110 (812)
Q Consensus 31 ~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 110 (812)
||..--..+.+.+-+.|.++.|..+|..+.. |..++..+.+.+++..|.+++.+. -+..+|..+...|.
T Consensus 12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~~d-----~~rl~~~~v~l~~~~~avd~~~k~------~~~~~~k~~~~~l~ 80 (336)
T d1b89a_ 12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN-----FGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACV 80 (336)
T ss_dssp C----------------CTTTHHHHHHHTTC-----HHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHCCCHHHHHHHHHhCCC-----HHHHHHHHHhhccHHHHHHHHHHc------CCHHHHHHHHHHHH
Confidence 3444444566667788999999999987664 777888888999999988887654 25668888888888
Q ss_pred hcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHhhhcCCCHHHHHHHHhcCC---CCCcchHHHHHHHHHcCCChhHHHH
Q 040319 111 RLLELELGFQIHALIVKMGCVDSVFVTNALMGLYGKFSFCLDYLLKLFDELP---HKDTVSWNTVISSVVNEFEYEKAFE 187 (812)
Q Consensus 111 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~~a~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~ 187 (812)
+......+ ++...+...++.....++..|-..| ..+....+++... ..+...++.++..|++.+ .++-.+
T Consensus 81 ~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~-~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~~-~~kl~e 153 (336)
T d1b89a_ 81 DGKEFRLA-----QMCGLHIVVHADELEELINYYQDRG-YFEELITMLEAALGLERAHMGMFTELAILYSKFK-PQKMRE 153 (336)
T ss_dssp HTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTC-HHHHHH
T ss_pred hCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcC-ChHHHHHHHHHHHcCCccchHHHHHHHHHHHHhC-hHHHHH
Confidence 77655443 2333334455555667888888888 8888888888543 346667788888887754 344444
Q ss_pred HHHHhHhcCCCCCCcchHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHH
Q 040319 188 LFRDMKRDNGFTVDYFTISTLLTACTGCFVLMEGRAVHAHAIRIGLGANLSVNNALIGFYTKCGRVKDVVA 258 (812)
Q Consensus 188 l~~~m~~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 258 (812)
.++.. + +.+-..-+++.|-..+-+ ..++-.|.+.|.++.|..
T Consensus 154 ~l~~~---s----~~y~~~k~~~~c~~~~l~----------------------~elv~Ly~~~~~~~~A~~ 195 (336)
T d1b89a_ 154 HLELF---W----SRVNIPKVLRAAEQAHLW----------------------AELVFLYDKYEEYDNAII 195 (336)
T ss_dssp HHHHH---S----TTSCHHHHHHHHHTTTCH----------------------HHHHHHHHHTTCHHHHHH
T ss_pred HHHhc---c----ccCCHHHHHHHHHHcCCh----------------------HHHHHHHHhcCCHHHHHH
Confidence 44332 1 122233444555443332 345556667777777666
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.65 E-value=0.00015 Score=64.17 Aligned_cols=142 Identities=8% Similarity=-0.084 Sum_probs=102.2
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCCcchHHHHH
Q 040319 505 VSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDAITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYASLV 584 (812)
Q Consensus 505 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li 584 (812)
..+......+.+.|++.+|+..|++.+. +.| .+.. ...+. ......+. ...|..+.
T Consensus 16 ~~~~e~G~~~~~~~~~~~A~~~Y~~al~--~~~----------~~~~---~~~~~-~~~~~~~~--------~~~~~Nla 71 (168)
T d1kt1a1 16 AIVKEKGTVYFKGGKYVQAVIQYGKIVS--WLE----------MEYG---LSEKE-SKASESFL--------LAAFLNLA 71 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHT----------TCCS---CCHHH-HHHHHHHH--------HHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH--HHH----------Hhhc---cchhh-hhhcchhH--------HHHHHhHH
Confidence 4556667778888889999888888765 111 1111 11111 11111111 23567788
Q ss_pred HHHhhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCCcch-
Q 040319 585 SVLGYWGFLEEAEETINNMP-FQP-KVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWHN- 661 (812)
Q Consensus 585 ~~l~~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~- 661 (812)
.+|.+.|++++|+..+++.. +.| +..+|..+..++...|+++.|+..++++++++|+++.+...+..+....+...+
T Consensus 72 ~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~e~ 151 (168)
T d1kt1a1 72 MCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKEHNER 151 (168)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHH
Confidence 89999999999999998855 455 678899999999999999999999999999999999999999999887776543
Q ss_pred HHHHHHHHH
Q 040319 662 SELVREDMR 670 (812)
Q Consensus 662 a~~~~~~m~ 670 (812)
..+++..|-
T Consensus 152 ~kk~~~~~f 160 (168)
T d1kt1a1 152 DRRTYANMF 160 (168)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 445555553
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.56 E-value=0.00036 Score=61.66 Aligned_cols=62 Identities=8% Similarity=-0.023 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCCcchHHHHHHHHHh
Q 040319 610 SVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWHNSELVREDMRE 671 (812)
Q Consensus 610 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 671 (812)
.++..+..++...|+++.|...++++++++|++..+|..++.+|...|++++|.+.+++..+
T Consensus 65 ~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~ 126 (168)
T d1kt1a1 65 AAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLE 126 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34555666788999999999999999999999999999999999999999999999999865
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=97.56 E-value=8.7e-05 Score=60.57 Aligned_cols=87 Identities=9% Similarity=-0.070 Sum_probs=50.9
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCC-cchHHHHHHH
Q 040319 509 GLIAGHLLHRQGDEALAVWSSMEKASIKPDA-ITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPT-SEHYASLVSV 586 (812)
Q Consensus 509 ~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~ 586 (812)
.+...+.+.|++++|+..|++.++ ..|+. ..+..+..++.+ .|++++|+..|+...+ +.|+ ...|..+..+
T Consensus 21 ~~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~--~~~~~~A~~~~~~al~---~~p~~~~a~~~la~~ 93 (112)
T d1hxia_ 21 EEGLSMLKLANLAEAALAFEAVCQ--KEPEREEAWRSLGLTQAE--NEKDGLAIIALNHARM---LDPKDIAVHAALAVS 93 (112)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhcc--cccccchhhhhhhhhhhh--hhhHHHhhcccccccc---cccccccchHHHHHH
Confidence 345556666777777777777666 55653 445555555555 6666666666666554 2343 4555555555
Q ss_pred HhhcCChHHHHHHHHh
Q 040319 587 LGYWGFLEEAEETINN 602 (812)
Q Consensus 587 l~~~g~~~~A~~~~~~ 602 (812)
|...|++++|++.+++
T Consensus 94 y~~~g~~~~A~~~l~~ 109 (112)
T d1hxia_ 94 HTNEHNANAALASLRA 109 (112)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHH
Confidence 5566666666555554
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.54 E-value=4.3e-06 Score=89.39 Aligned_cols=131 Identities=10% Similarity=-0.053 Sum_probs=56.7
Q ss_pred CChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCCcchHHHHHHHHhhcCChHHH
Q 040319 518 RQGDEALAVWSSMEKASIKPDA-ITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLEEA 596 (812)
Q Consensus 518 g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~~A 596 (812)
+.++.|+..+++... +.|+. ..+..+...+.. .|+.++|...+..... +.| ...+..+.+++...|++++|
T Consensus 100 ~~Y~~ai~~l~~~~~--l~~~~~~~~~~lg~~~~~--~~~~~~A~~~~~~al~---~~~-~~~~~~LG~l~~~~~~~~~A 171 (497)
T d1ya0a1 100 GFYTQLLQELCTVFN--VDLPCRVKSSQLGIISNK--QTHTSAIVKPQSSSCS---YIC-QHCLVHLGDIARYRNQTSQA 171 (497)
T ss_dssp HHHHHHHHHHTC-----------------------------------CCHHHH---HHH-HHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHC--CChhhHHHHHHhHHHHHh--CCCHHHHHHHHHHHhC---CCH-HHHHHHHHHHHHHcccHHHH
Confidence 334444444443333 34433 333334334444 5666666655544432 011 23455666666666666666
Q ss_pred HHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhC
Q 040319 597 EETINNMP-FQP-KVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSS 656 (812)
Q Consensus 597 ~~~~~~m~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~ 656 (812)
...+++.. +.| +...|+.|...+...|+...|...+.+++.++|..+.++..|..+|.+.
T Consensus 172 ~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~~ 233 (497)
T d1ya0a1 172 ESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKA 233 (497)
T ss_dssp HHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHh
Confidence 66666643 444 3456666666666666666666666666666666666666666555443
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.43 E-value=0.00018 Score=64.27 Aligned_cols=62 Identities=8% Similarity=-0.054 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCCcchHHHHHHHHHh
Q 040319 610 SVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWHNSELVREDMRE 671 (812)
Q Consensus 610 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 671 (812)
..|..+..++...|+.+.|...++++++++|.+...|..++.+|.+.|++++|.+.+++++.
T Consensus 68 ~a~~~la~~~~~~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~ 129 (179)
T d2ff4a2 68 LAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 129 (179)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 46778888999999999999999999999999999999999999999999999999998744
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.36 E-value=4.9e-05 Score=65.45 Aligned_cols=124 Identities=9% Similarity=-0.001 Sum_probs=69.7
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCCcchHHHHHHHHhhcCC
Q 040319 514 HLLHRQGDEALAVWSSMEKASIKPDAI-TFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGF 592 (812)
Q Consensus 514 ~~~~g~~~~A~~l~~~m~~~g~~pd~~-t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~ 592 (812)
|-+.+.+++|++.|++.++ +.|+.. .+..+..++.. .+....+.+ ..+.
T Consensus 7 ~~r~~~fe~A~~~~e~al~--~~P~~~~~~~~~g~~l~~--~~~~~~~~e--------------------------~~~~ 56 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYK--SNPLDADNLTRWGGVLLE--LSQFHSISD--------------------------AKQM 56 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHH--HHHHSCHHH--------------------------HHHH
T ss_pred HHHHccHHHHHHHHHHHHh--hCCcchHHHHHHHHHHHH--hhhhhhhhH--------------------------HHHH
Confidence 4455667777777777777 667664 34444444443 222211110 1122
Q ss_pred hHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCCc
Q 040319 593 LEEAEETINNMP-FQP-KVSVWRALLDSCRIR-----------LNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRW 659 (812)
Q Consensus 593 ~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~~-----------~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~ 659 (812)
+++|++.+++.. +.| +..+|..+..++... ++++.|...++++++++|++..++..|+...
T Consensus 57 ~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~------ 130 (145)
T d1zu2a1 57 IQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTA------ 130 (145)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH------
T ss_pred HHHHHHHHHHHHHhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHH------
Confidence 334444444432 333 344555555444433 2468899999999999999988877776664
Q ss_pred chHHHHHHHHHhCCC
Q 040319 660 HNSELVREDMREKGF 674 (812)
Q Consensus 660 ~~a~~~~~~m~~~g~ 674 (812)
.|.++..+..++|+
T Consensus 131 -ka~~~~~e~~k~~~ 144 (145)
T d1zu2a1 131 -KAPQLHAEAYKQGL 144 (145)
T ss_dssp -THHHHHHHHHHSSS
T ss_pred -HHHHHHHHHHHHhc
Confidence 45555555555543
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.34 E-value=0.059 Score=52.29 Aligned_cols=267 Identities=11% Similarity=0.012 Sum_probs=162.7
Q ss_pred hHHhHhccCCchHHHHHHHHHHHhccCCCccchHHHHHHHHccCChhhHHHHHhcCCCCChhhHHHHHHHHHhcCChhHH
Q 040319 4 SLRLSVQCGEVSLAKAIHASLIKLLLEQDTRFGNPLISAYLKLGHVADAYKIFYGLSSPNVVSFTSLISGLAKLGREEEA 83 (812)
Q Consensus 4 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a 83 (812)
+...|...|.++.|..++..+ .-+..++..|.+.++++.|..++.+.. +..+|..+...+.+.....-+
T Consensus 20 i~~~c~~~~lye~A~~lY~~~---------~d~~rl~~~~v~l~~~~~avd~~~k~~--~~~~~k~~~~~l~~~~e~~la 88 (336)
T d1b89a_ 20 VGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN--STRTWKEVCFACVDGKEFRLA 88 (336)
T ss_dssp ---------CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHHT--CHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHhC---------CCHHHHHHHHHhhccHHHHHHHHHHcC--CHHHHHHHHHHHHhCcHHHHH
Confidence 345677788888888888754 246788888999999999988887654 455888888888887665443
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCchHHHHHHHHHhhhcCCCHHHHHHHHhcCCC
Q 040319 84 IELFFRMRSEGIVPNEHSFVAILTACIRLLELELGFQIHALIVKMGCVDSVFVTNALMGLYGKFSFCLDYLLKLFDELPH 163 (812)
Q Consensus 84 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~~a~~~f~~~~~ 163 (812)
.+.......++.....++..+-..|.++....+++..... -..+..+++-|+..|++.+ .+...+.+.....
T Consensus 89 -----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~~--~~kl~e~l~~~s~ 160 (336)
T d1b89a_ 89 -----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKFK--PQKMREHLELFWS 160 (336)
T ss_dssp -----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTTC--HHHHHHHHHHHST
T ss_pred -----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHhC--hHHHHHHHHhccc
Confidence 2333445567777788999999999999988888876532 2567778899999999976 3344444433211
Q ss_pred C-----------CcchHHHHHHHHHcCCChhHHHHHHHHhHhcCCCCCCcchHHHHHHHHhcCCChHHHHHHHHHHHHhC
Q 040319 164 K-----------DTVSWNTVISSVVNEFEYEKAFELFRDMKRDNGFTVDYFTISTLLTACTGCFVLMEGRAVHAHAIRIG 232 (812)
Q Consensus 164 ~-----------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g 232 (812)
+ ....|..++-.|.+.|+++.|+.+.-.= .|+.......+..+.+..+.+...++....++.
T Consensus 161 ~y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~i~~------~~~~~~~~~f~e~~~k~~N~e~~~~~i~~yL~~- 233 (336)
T d1b89a_ 161 RVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNH------PTDAWKEGQFKDIITKVANVELYYRAIQFYLEF- 233 (336)
T ss_dssp TSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHS------TTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHH-
T ss_pred cCCHHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHHHHc------chhhhhHHHHHHHHHccCChHHHHHHHHHHHHc-
Confidence 1 1223555555555555555555544221 345555556666677777777766666666553
Q ss_pred CCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCcchhHHHHHHHHHhhCChhHHHHHhccCCC-CCcccHHHHHHHHHh
Q 040319 233 LGANLSVNNALIGFYTKCGRVKDVVALLERMPVMDIITLTEIIIAYMEFGYVDLAVEIFDKMPE-KNSVSYNALLAGYCK 311 (812)
Q Consensus 233 ~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~-~d~~~~~~li~~~~~ 311 (812)
++...+.|+......-+.....+.+++ .+++.-....++...+ .+....+++...|..
T Consensus 234 ---~p~~i~~lL~~v~~~~d~~r~V~~~~k------------------~~~l~li~p~Le~v~~~n~~~vn~al~~lyie 292 (336)
T d1b89a_ 234 ---KPLLLNDLLMVLSPRLDHTRAVNYFSK------------------VKQLPLVKPYLRSVQNHNNKSVNESLNNLFIT 292 (336)
T ss_dssp ---CGGGHHHHHHHHGGGCCHHHHHHHHHH------------------TTCTTTTHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred ---CHHHHHHHHHHhccCCCHHHHHHHHHh------------------cCCcHHHHHHHHHHHHcChHHHHHHHHHHHhC
Confidence 223345555555555555555554433 3344333444444333 234567778888888
Q ss_pred CCChHH
Q 040319 312 NGKAME 317 (812)
Q Consensus 312 ~g~~~~ 317 (812)
.++++.
T Consensus 293 ~~d~~~ 298 (336)
T d1b89a_ 293 EEDYQA 298 (336)
T ss_dssp TTCHHH
T ss_pred cchhHH
Confidence 887644
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.23 E-value=0.00046 Score=57.68 Aligned_cols=89 Identities=15% Similarity=0.097 Sum_probs=56.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCC--------c
Q 040319 507 WNGLIAGHLLHRQGDEALAVWSSMEKASIKPDA-ITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPT--------S 577 (812)
Q Consensus 507 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~--------~ 577 (812)
+..+...|.+.|++++|+..|++.++ +.|+. ..+..+..+|.. .|++++|.+.++.+.+ +.|+ .
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~--~~p~~~~~~~~~a~~~~~--~~~~~~A~~~~~~al~---l~~~~~~~~~~~a 79 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKE--LDPTNMTYITNQAAVYFE--KGDYNKCRELCEKAIE---VGRENREDYRQIA 79 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHH--HTCHHHHHHHHHHHHH---HHHHSTTCHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH--hCcccHHHHHhHHHHHHH--cCchHHHHHHHHHHHH---hCcccHHHHHHHH
Confidence 44566677777777888888877777 55554 556666667777 7777777777777654 1221 1
Q ss_pred chHHHHHHHHhhcCChHHHHHHHHh
Q 040319 578 EHYASLVSVLGYWGFLEEAEETINN 602 (812)
Q Consensus 578 ~~y~~li~~l~~~g~~~~A~~~~~~ 602 (812)
.+|..+.+.+...+++++|++.+++
T Consensus 80 ~~~~~lg~~~~~~~~~~~A~~~~~k 104 (128)
T d1elra_ 80 KAYARIGNSYFKEEKYKDAIHFYNK 104 (128)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 2444555555566666666666654
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.22 E-value=6e-05 Score=80.22 Aligned_cols=261 Identities=9% Similarity=-0.091 Sum_probs=134.8
Q ss_pred HHHHHHhcCCCC-CCceeeeHHHHHHHHHcCChhhHHHHHHHhcccCCCCCChhhHHHHHHHhcCccchHHHHHHHHHHH
Q 040319 387 DAEKMFYRWPTD-RDDSIIWTSMICGYARSGKPEHAILLFHQSQSEATVVPDEIALTSVLGVCGTLGFHEMGKQIHSYAL 465 (812)
Q Consensus 387 ~A~~~f~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~ 465 (812)
+|.+.|++...- ++...+|..+...|...|++++| |+++.. ..|+...-..+....-+ ..+..+.+.+....
T Consensus 4 eA~q~~~qA~~l~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~---~dp~~a~~~~~e~~Lw~-~~y~~~ie~~r~~~ 76 (497)
T d1ya0a1 4 QSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDL---YQKMLV---TDLEYALDKKVEQDLWN-HAFKNQITTLQGQA 76 (497)
T ss_dssp HHHHHHHHHHHHHGGGTCSSSCSSSSHHHHHHHHHH---HHHHHH---HCHHHHHHHTHHHHHHH-HHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHhhHHHHHHHHchHHHH---HHHHHH---cChhhHHHHhHHHHHHH-HHHHHHHHHHHHhc
Confidence 566777665422 33456677777888888888776 555544 33322111001100000 11233344444444
Q ss_pred HhCCCCchhH--HHHHHHHhhhcCCHHHHHHHHccCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCHH
Q 040319 466 KTGFSSDLGV--ANSMVSMYFKCCNMSNAIKAFNKMPS---HDIVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDAI 540 (812)
Q Consensus 466 ~~g~~~~~~~--~~~Li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ 540 (812)
+..-.++..- ...+...+...+.++.|...+..... ++...|..+...+...|+.++|...+++... ..| ..
T Consensus 77 k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~--~~~-~~ 153 (497)
T d1ya0a1 77 KNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCS--YIC-QH 153 (497)
T ss_dssp SCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC-------------------------------CCHHHH--HHH-HH
T ss_pred ccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhC--CCH-HH
Confidence 3332222221 12222334456677788777776544 4566778888888888999999888877765 222 25
Q ss_pred HHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCC-cchHHHHHHHHhhcCChHHHHHHHHhCC--CCCCHHHHHHHHH
Q 040319 541 TFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPT-SEHYASLVSVLGYWGFLEEAEETINNMP--FQPKVSVWRALLD 617 (812)
Q Consensus 541 t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g~~~~A~~~~~~m~--~~p~~~~~~~ll~ 617 (812)
++..+...+.. .|++++|..+|++..+ +.|+ ...|+.|..++...|+..+|...|.+.. .+|-+.++..|..
T Consensus 154 ~~~~LG~l~~~--~~~~~~A~~~y~~A~~---l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~ 228 (497)
T d1ya0a1 154 CLVHLGDIARY--RNQTSQAESYYRHAAQ---LVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQK 228 (497)
T ss_dssp HHHHHHHHHHH--TTCHHHHHHHHHHHHH---HCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHH
T ss_pred HHHHHHHHHHH--cccHHHHHHHHHHHHH---HCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 66667777777 8899999999998876 5676 5789999999999999999998888743 3566778888877
Q ss_pred HHHhcCCHHHHHHHHHHHHccCCC---CCchHHHHHhhhhhCCCcchHHHHHHHH
Q 040319 618 SCRIRLNTTIGKRVAKHILAMEPQ---DPATYILVSNLYSSSGRWHNSELVREDM 669 (812)
Q Consensus 618 ~~~~~~~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~y~~~g~~~~a~~~~~~m 669 (812)
.+.+......+. +..+. -...++.+..++.....+++..++.+++
T Consensus 229 ~~~~~~~~~~~~-------~~~~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~~~~ 276 (497)
T d1ya0a1 229 ALSKALESRDEV-------KTKWGVSDFIKAFIKFHGHVYLSKSLEKLSPLREKL 276 (497)
T ss_dssp HHHHHTTSCCCC-------CSSCCHHHHHHHHHHHHHHHHHTCCGGGHHHHHHHH
T ss_pred HHHHhhhhhhhh-------ccccccchHHHHHHHHHHHHHhCCchhhHHHHHHHH
Confidence 765433211000 00010 1124455666677777777776665544
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.22 E-value=6.6e-05 Score=64.64 Aligned_cols=83 Identities=10% Similarity=0.039 Sum_probs=56.9
Q ss_pred hcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHh----------cCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhC
Q 040319 589 YWGFLEEAEETINNMP-FQP-KVSVWRALLDSCRI----------RLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSS 656 (812)
Q Consensus 589 ~~g~~~~A~~~~~~m~-~~p-~~~~~~~ll~~~~~----------~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~ 656 (812)
|.+.+++|++.+++.. ..| ++.+|..+..++.. .+.+++|+..++++++++|+++.+|..++++|...
T Consensus 9 r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~ 88 (145)
T d1zu2a1 9 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 88 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHHHc
Confidence 3344555555555432 333 34444444444432 34568899999999999999999999999999987
Q ss_pred CC-----------cchHHHHHHHHHh
Q 040319 657 GR-----------WHNSELVREDMRE 671 (812)
Q Consensus 657 g~-----------~~~a~~~~~~m~~ 671 (812)
|+ +++|.+.+++..+
T Consensus 89 g~~~~~~~~~~~~~~~A~~~~~kal~ 114 (145)
T d1zu2a1 89 AFLTPDETEAKHNFDLATQFFQQAVD 114 (145)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhHHHHHHhHHHhhhhhhcccc
Confidence 75 5778888777644
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=97.01 E-value=0.026 Score=53.24 Aligned_cols=80 Identities=11% Similarity=-0.061 Sum_probs=37.2
Q ss_pred CCHHHHHHHHccCCC-CChhHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCC--CCchHHH
Q 040319 487 CNMSNAIKAFNKMPS-HDIVSWNGLIAGHLL----HRQGDEALAVWSSMEKASIKPDAITFVLIISAYRYT--NLNLVDS 559 (812)
Q Consensus 487 g~~~~A~~~f~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~--~~g~~~~ 559 (812)
.+...+...++...+ .+..++..+...|.. ..+.++|+..|++..+.| +...+..|...+.+. -..+.++
T Consensus 160 ~~~~~~~~~~~~a~~~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~LG~~y~~G~g~~~n~~~ 236 (265)
T d1ouva_ 160 KDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAMQYNGEGVTRNEKQ 236 (265)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCSTT
T ss_pred cccccchhhhhccccccccccccchhhhcccCcccccchhhhhhhHhhhhccc---CHHHHHHHHHHHHcCCCCccCHHH
Confidence 344444444443332 344444444444443 345666666666666654 222222222222210 0225666
Q ss_pred HHHHHHHhhh
Q 040319 560 CRKLFLSMKT 569 (812)
Q Consensus 560 a~~~~~~m~~ 569 (812)
|.++|+....
T Consensus 237 A~~~~~kAa~ 246 (265)
T d1ouva_ 237 AIENFKKGCK 246 (265)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666666654
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.01 E-value=0.00061 Score=53.29 Aligned_cols=74 Identities=14% Similarity=-0.029 Sum_probs=56.4
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHhCC--------CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHH
Q 040319 579 HYASLVSVLGYWGFLEEAEETINNMP--------FQPK-VSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILV 649 (812)
Q Consensus 579 ~y~~li~~l~~~g~~~~A~~~~~~m~--------~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 649 (812)
.+--+...+.+.|++++|.+.+++.. ..++ ..++..|..++.+.|++++|...++++++++|+++.++..+
T Consensus 7 dc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~Nl 86 (95)
T d1tjca_ 7 DSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNL 86 (95)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHHH
Confidence 34456666777777777777666532 1233 56788899999999999999999999999999999888777
Q ss_pred Hhh
Q 040319 650 SNL 652 (812)
Q Consensus 650 ~~~ 652 (812)
..+
T Consensus 87 ~~~ 89 (95)
T d1tjca_ 87 KYF 89 (95)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=96.97 E-value=0.00068 Score=58.91 Aligned_cols=87 Identities=11% Similarity=-0.067 Sum_probs=62.7
Q ss_pred HHHhhcCChHHHHHHHHhCC----CCC----------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCC--------
Q 040319 585 SVLGYWGFLEEAEETINNMP----FQP----------KVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQD-------- 642 (812)
Q Consensus 585 ~~l~~~g~~~~A~~~~~~m~----~~p----------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~-------- 642 (812)
..+.+.|++++|++.|++.. .-| ...+|..+..++...|+++.|...+++++++.|+.
T Consensus 17 ~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~ 96 (156)
T d2hr2a1 17 QRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEG 96 (156)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccccccccccccc
Confidence 34455666666666665532 111 14567778888888899999998888888765431
Q ss_pred ---CchHHHHHhhhhhCCCcchHHHHHHHHHh
Q 040319 643 ---PATYILVSNLYSSSGRWHNSELVREDMRE 671 (812)
Q Consensus 643 ---~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 671 (812)
..++..++.+|...|++++|.+.+++..+
T Consensus 97 ~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 97 KLWISAVYSRALALDGLGRGAEAMPEFKKVVE 128 (156)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred chhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 22578899999999999999999998754
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=96.74 E-value=0.00073 Score=64.27 Aligned_cols=125 Identities=8% Similarity=-0.045 Sum_probs=72.8
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCC-cchHHHHHHHHhhcCCh
Q 040319 516 LHRQGDEALAVWSSMEKASIKPDA-ITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPT-SEHYASLVSVLGYWGFL 593 (812)
Q Consensus 516 ~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g~~ 593 (812)
+.|++++|+..+++.++ ..|+. ..+..+...++. .|++++|.+.|+...+ +.|+ ...+..+..++...+..
T Consensus 8 ~~G~l~eAl~~l~~al~--~~P~d~~ar~~La~lL~~--~G~~e~A~~~l~~a~~---l~P~~~~~~~~l~~ll~a~~~~ 80 (264)
T d1zbpa1 8 SEGQLQQALELLIEAIK--ASPKDASLRSSFIELLCI--DGDFERADEQLMQSIK---LFPEYLPGASQLRHLVKAAQAR 80 (264)
T ss_dssp TTTCHHHHHHHHHHHHH--TCTTCHHHHHHHHHHHHH--HTCHHHHHHHHHHHHH---HCGGGHHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHhcccc
Confidence 35666677777776666 55554 445555556666 6677777766666654 3444 33344444444444444
Q ss_pred HHHHHHHHh--CCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHH
Q 040319 594 EEAEETINN--MPFQPK-VSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYI 647 (812)
Q Consensus 594 ~~A~~~~~~--m~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 647 (812)
+++..-... ...+|+ ...+......+...|+.+.|...++++.++.|..+..+.
T Consensus 81 ~~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~~~ 137 (264)
T d1zbpa1 81 KDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLAN 137 (264)
T ss_dssp HHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEEET
T ss_pred HHHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCcccc
Confidence 443332222 112332 233333445577789999999999999999888766543
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.60 E-value=0.0048 Score=54.52 Aligned_cols=74 Identities=14% Similarity=0.175 Sum_probs=61.8
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhcCCCCchHHHHHHHHHHhhh----hcCccCCcc
Q 040319 504 IVSWNGLIAGHLLHRQGDEALAVWSSMEKASIKPDA-ITFVLIISAYRYTNLNLVDSCRKLFLSMKT----IYNIEPTSE 578 (812)
Q Consensus 504 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~----~~~~~p~~~ 578 (812)
...|..+...+...|++++|+..++++++ +.|.. ..+..++.++.. .|+..+|++.|+++.+ +.|+.|...
T Consensus 67 ~~a~~~la~~~~~~g~~~~Al~~~~~al~--~~P~~e~~~~~l~~al~~--~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~ 142 (179)
T d2ff4a2 67 VLAHTAKAEAEIACGRASAVIAELEALTF--EHPYREPLWTQLITAYYL--SDRQSDALGAYRRVKTTLADDLGIDPGPT 142 (179)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHT--TTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred HHHHHHHHHHHHHCCCchHHHHHHHHHHH--hCCccHHHHHHHHHHHHH--hcCHHHHHHHHHHHHHHHHHHhCCCcCHH
Confidence 35678889999999999999999999999 77765 778899999999 9999999999998743 468888876
Q ss_pred hHH
Q 040319 579 HYA 581 (812)
Q Consensus 579 ~y~ 581 (812)
+-.
T Consensus 143 l~~ 145 (179)
T d2ff4a2 143 LRA 145 (179)
T ss_dssp HHH
T ss_pred HHH
Confidence 533
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=96.24 E-value=0.00072 Score=64.32 Aligned_cols=117 Identities=14% Similarity=0.095 Sum_probs=84.4
Q ss_pred CchHHHHHHHHHHhhhhcCccCC-cchHHHHHHHHhhcCChHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcCCHHHHHH
Q 040319 554 LNLVDSCRKLFLSMKTIYNIEPT-SEHYASLVSVLGYWGFLEEAEETINNMP-FQPK-VSVWRALLDSCRIRLNTTIGKR 630 (812)
Q Consensus 554 ~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~li~~l~~~g~~~~A~~~~~~m~-~~p~-~~~~~~ll~~~~~~~~~~~a~~ 630 (812)
.|++++|+..+++..+ ..|+ ...+..++.+|++.|++++|.+.++... ..|+ ...+..+.......+..+.+..
T Consensus 9 ~G~l~eAl~~l~~al~---~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a~~ 85 (264)
T d1zbpa1 9 EGQLQQALELLIEAIK---ASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDFAQ 85 (264)
T ss_dssp TTCHHHHHHHHHHHHH---TCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHHHH
Confidence 7999999999999887 3564 7999999999999999999999999865 6675 5566555555544333332222
Q ss_pred HHHHH-HccCCCCCchHHHHHhhhhhCCCcchHHHHHHHHHhCC
Q 040319 631 VAKHI-LAMEPQDPATYILVSNLYSSSGRWHNSELVREDMREKG 673 (812)
Q Consensus 631 ~~~~~-~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g 673 (812)
..... +..+|++...+...+.++...|++++|.+.+++..+..
T Consensus 86 ~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~ 129 (264)
T d1zbpa1 86 GAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELR 129 (264)
T ss_dssp SCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Confidence 11111 11234445566777889999999999999999887643
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=96.19 E-value=0.0076 Score=51.89 Aligned_cols=105 Identities=14% Similarity=-0.000 Sum_probs=61.4
Q ss_pred HHHHH--HHHHHhcCChHHHHHHHHHHHHCCCCCC-------------HHHHHHHHHHhcCCCCchHHHHHHHHHHhhhh
Q 040319 506 SWNGL--IAGHLLHRQGDEALAVWSSMEKASIKPD-------------AITFVLIISAYRYTNLNLVDSCRKLFLSMKTI 570 (812)
Q Consensus 506 ~~~~l--i~~~~~~g~~~~A~~l~~~m~~~g~~pd-------------~~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~ 570 (812)
+|..+ ...+...|++++|++.|++.++ +.|+ ...|+.+..++.. .|++++|.+.++...+
T Consensus 9 a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~--i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~--lg~~~~A~~~~~~al~- 83 (156)
T d2hr2a1 9 AYLALSDAQRQLVAGEYDEAAANCRRAME--ISHTMPPEEAFDHAGFDAFCHAGLAEALAG--LRSFDEALHSADKALH- 83 (156)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HHTTSCTTSCCCHHHHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hChhhhhhhhcccchhHHHHHHHHHHHHHH--cCccchhhHhhhhhhh-
Confidence 45545 3445567888888888888876 3332 1334444444444 5555555544444332
Q ss_pred cCccCCcchHHHHHHHHhhcCChHHHHHHHHhC-CCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCC
Q 040319 571 YNIEPTSEHYASLVSVLGYWGFLEEAEETINNM-PFQPK-----VSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDP 643 (812)
Q Consensus 571 ~~~~p~~~~y~~li~~l~~~g~~~~A~~~~~~m-~~~p~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~ 643 (812)
+..+. ...|+ ..++..+..++...|+.++|...+++++++.|+..
T Consensus 84 ----------------------------~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~~ 134 (156)
T d2hr2a1 84 ----------------------------YFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERK 134 (156)
T ss_dssp ----------------------------HHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred ----------------------------cccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHhh
Confidence 11110 11221 22456677788889999999999999998876543
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.18 E-value=0.0071 Score=46.83 Aligned_cols=60 Identities=10% Similarity=-0.031 Sum_probs=51.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHccCCCC-------CchHHHHHhhhhhCCCcchHHHHHHHHHh
Q 040319 612 WRALLDSCRIRLNTTIGKRVAKHILAMEPQD-------PATYILVSNLYSSSGRWHNSELVREDMRE 671 (812)
Q Consensus 612 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~-------~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 671 (812)
+-.+...+...|+++.|...+++++++.|.+ +.++..|+.+|.+.|++++|.+.+++..+
T Consensus 8 c~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~ 74 (95)
T d1tjca_ 8 SFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (95)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHH
Confidence 3456778899999999999999999886654 34688999999999999999999999855
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=91.90 E-value=6.9 Score=39.00 Aligned_cols=124 Identities=13% Similarity=0.093 Sum_probs=68.5
Q ss_pred CChHHHHHHHHHHHHCC-CCCCHHH-HHH-HHHHhcCCCCchHHHHHHHHHHhhhhcCccCCcchHHHHHHHHhhcCChH
Q 040319 518 RQGDEALAVWSSMEKAS-IKPDAIT-FVL-IISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGFLE 594 (812)
Q Consensus 518 g~~~~A~~l~~~m~~~g-~~pd~~t-~~~-ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~~ 594 (812)
.+.+.|..++....... ..++... ... +...... .+..+.+...+...... ..+.....-++....+.+++.
T Consensus 228 ~d~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~~---~~~~~~~~w~~~~al~~~~~~ 302 (450)
T d1qsaa1 228 QDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMG--NDVTDEQAKWRDDAIMR---SQSTSLIERRVRMALGTGDRR 302 (450)
T ss_dssp HCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCS--TTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHHTCHH
T ss_pred cChhHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHH--cCchHHHHHHHHhhccc---ccchHHHHHHHHHHHHcCChH
Confidence 46677777777765532 2232221 121 2222333 45566676666655441 123333333444455678888
Q ss_pred HHHHHHHhCCCCC-CHHHH-HHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHH
Q 040319 595 EAEETINNMPFQP-KVSVW-RALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVS 650 (812)
Q Consensus 595 ~A~~~~~~m~~~p-~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 650 (812)
.+...++.|+..| ...-| --+..+....|+.+.|...+..+-. .+ ..|-.|+
T Consensus 303 ~~~~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~-~~---~fYG~LA 356 (450)
T d1qsaa1 303 GLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ-QR---GFYPMVA 356 (450)
T ss_dssp HHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT-SC---SHHHHHH
T ss_pred HHHHHHHhcCcccccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc-CC---ChHHHHH
Confidence 8888888887443 22222 2344567778888888888887764 23 3565554
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=91.38 E-value=2.5 Score=32.96 Aligned_cols=141 Identities=13% Similarity=0.105 Sum_probs=84.6
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCCcchHHHHHHHHhhcCCh
Q 040319 514 HLLHRQGDEALAVWSSMEKASIKPDAITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGYWGFL 593 (812)
Q Consensus 514 ~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~~g~~ 593 (812)
+...|..++..++..+...+. +..-|+-++--... .-+-+...+.++.+-+-+.+.|-. ..-.++.++.+.+..
T Consensus 12 ~ildG~ve~Gveii~k~~~ss---~~~E~NW~ICNiid--t~dC~~v~~~Ld~IG~~FDls~C~-Nlk~vv~C~~~~n~~ 85 (161)
T d1wy6a1 12 FLLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLE--SIDCRYMFQVLDKIGSYFDLDKCQ-NLKSVVECGVINNTL 85 (161)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHH--HCCHHHHHHHHHHHGGGSCGGGCS-CTHHHHHHHHHTTCC
T ss_pred HHHhhhHHhHHHHHHHHcccC---Cccccceeeeeccc--ccchHHHHHHHHHHhhhcCchhhh-cHHHHHHHHHHhcch
Confidence 344677788888887776632 22333333321111 223334445555554433333321 112334444444432
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhhCCCcchHHHHHHHHHhCC
Q 040319 594 EEAEETINNMPFQPKVSVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYILVSNLYSSSGRWHNSELVREDMREKG 673 (812)
Q Consensus 594 ~~A~~~~~~m~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g 673 (812)
. -...--|....++|.-+.-+.+++.+++-+.-+|.....+++.|.+.|...++.++..+.-++|
T Consensus 86 s---------------e~vdlALd~lv~~~kkd~Ld~i~~~l~kn~~i~~~~llkia~A~kkig~~re~nell~~ACe~G 150 (161)
T d1wy6a1 86 N---------------EHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKG 150 (161)
T ss_dssp C---------------HHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred H---------------HHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHh
Confidence 2 2334455667788888888888888888665568888999999999999999999999988888
Q ss_pred CC
Q 040319 674 FR 675 (812)
Q Consensus 674 ~~ 675 (812)
++
T Consensus 151 ~K 152 (161)
T d1wy6a1 151 EK 152 (161)
T ss_dssp CH
T ss_pred HH
Confidence 74
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.79 E-value=0.72 Score=36.48 Aligned_cols=74 Identities=11% Similarity=-0.042 Sum_probs=50.1
Q ss_pred CCcchHHHHHHHHhhcCC---hHHHHHHHHhCC-CCC-CH-HHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCCchHHH
Q 040319 575 PTSEHYASLVSVLGYWGF---LEEAEETINNMP-FQP-KV-SVWRALLDSCRIRLNTTIGKRVAKHILAMEPQDPATYIL 648 (812)
Q Consensus 575 p~~~~y~~li~~l~~~g~---~~~A~~~~~~m~-~~p-~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 648 (812)
|++.+--.+.-+|.++.. .++|+.++++.. ..| +. -.|--|.-+|.+.|+++.|.+.++++++++|+|..+...
T Consensus 33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~L 112 (124)
T d2pqrb1 33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGAL 112 (124)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHHH
Confidence 444455555555655543 456666666643 234 33 466677778899999999999999999999987765443
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=90.30 E-value=1.1 Score=36.10 Aligned_cols=83 Identities=7% Similarity=-0.114 Sum_probs=53.6
Q ss_pred cCChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHccCCCCCchHHHHHhhhhh----CCCcch
Q 040319 590 WGFLEEAEETINNMPFQPKVSVWRALLDSCRI----RLNTTIGKRVAKHILAMEPQDPATYILVSNLYSS----SGRWHN 661 (812)
Q Consensus 590 ~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~y~~----~g~~~~ 661 (812)
..+.++|++++++.--.-++.....|...+.. ..|.++|...++++.+.. ++.+...|+.+|.. ..+.++
T Consensus 36 ~~~~~~a~~~~~~aa~~g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g--~~~a~~~Lg~~y~~G~gv~~d~~~ 113 (133)
T d1klxa_ 36 QINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN--DQDGCLILGYKQYAGKGVVKNEKQ 113 (133)
T ss_dssp TSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred ccCHHHHHHHHhhhhcccchhhhhhHHHhhhhccccchhhHHHHHHHhhhhccC--cchHHHHHHHHHHcCCccCCCHHH
Confidence 34556666666654322233333444433432 457788888888887764 46778888888876 457888
Q ss_pred HHHHHHHHHhCCC
Q 040319 662 SELVREDMREKGF 674 (812)
Q Consensus 662 a~~~~~~m~~~g~ 674 (812)
|.+++++.-+.|.
T Consensus 114 A~~~~~~Aa~~G~ 126 (133)
T d1klxa_ 114 AVKTFEKACRLGS 126 (133)
T ss_dssp HHHHHHHHHHTTC
T ss_pred HHHHHHHHHHCCC
Confidence 8888888777664
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.68 E-value=0.66 Score=36.69 Aligned_cols=65 Identities=6% Similarity=-0.001 Sum_probs=52.8
Q ss_pred CCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHccCCCCC-chHHHHHhhhhhCCCcchHHHHHHHHHh
Q 040319 607 PKVSVWRALLDSCRIR---LNTTIGKRVAKHILAMEPQDP-ATYILVSNLYSSSGRWHNSELVREDMRE 671 (812)
Q Consensus 607 p~~~~~~~ll~~~~~~---~~~~~a~~~~~~~~~~~p~~~-~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 671 (812)
|...+.-.+.++..++ .+.++|+.+++.+++.+|.+. ..+..|+-.|.+.|++++|.+.++++-+
T Consensus 33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ 101 (124)
T d2pqrb1 33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 101 (124)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 4555666666666654 456799999999999998764 6778999999999999999999999854
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=88.25 E-value=2.7 Score=33.62 Aligned_cols=111 Identities=6% Similarity=-0.150 Sum_probs=69.4
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcCCCCchHHHHHHHHHHhhhhcCccCCcchHHHHHHHHhh----cCChH
Q 040319 519 QGDEALAVWSSMEKASIKPDAITFVLIISAYRYTNLNLVDSCRKLFLSMKTIYNIEPTSEHYASLVSVLGY----WGFLE 594 (812)
Q Consensus 519 ~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~li~~l~~----~g~~~ 594 (812)
++++|+++|++..+.|. |. ....|. ... ..+.++|.++++...+ .| ++.....|..+|.. ..+.+
T Consensus 8 d~~~A~~~~~kaa~~g~-~~--a~~~l~--~~~--~~~~~~a~~~~~~aa~-~g---~~~a~~~Lg~~y~~g~~~~~d~~ 76 (133)
T d1klxa_ 8 DLKKAIQYYVKACELNE-MF--GCLSLV--SNS--QINKQKLFQYLSKACE-LN---SGNGCRFLGDFYENGKYVKKDLR 76 (133)
T ss_dssp HHHHHHHHHHHHHHTTC-TT--HHHHHH--TCT--TSCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHHHCSSSCCCHH
T ss_pred CHHHHHHHHHHHHHCCC-hh--hhhhhc--ccc--ccCHHHHHHHHhhhhc-cc---chhhhhhHHHhhhhccccchhhH
Confidence 56788888888877762 22 222222 233 5677888888887765 22 34555556665543 34678
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHccCC
Q 040319 595 EAEETINNMPFQPKVSVWRALLDSCRI----RLNTTIGKRVAKHILAMEP 640 (812)
Q Consensus 595 ~A~~~~~~m~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~p 640 (812)
+|.+++++.--.-++.....|...|.. ..|.++|...++++.++..
T Consensus 77 ~A~~~~~~aa~~g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~ 126 (133)
T d1klxa_ 77 KAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 126 (133)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhhhhccCcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence 888888875422334444445444443 4688999999999887754
|