Citrus Sinensis ID: 040360

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------20
Protein Sequence
MLEKSSSGYRTIELTVLSGEDLRIDRRLIKKNAFAIVQTDTSFDYCTTKVDESGGSHPSWNEKLVIELPMHARFITVQVQCKSKSSSSGNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRNAKGDKNGIINVSVRSLKVAADQHASSSNYLSKAPRLNVQGYVPAYSGFASGFGAPVGGVVTGVPVWCANRA
Secondary Structure (PSIPRED)
ccccccccccEEEEEEEEEccccccccccccccEEEEEEcccccEEEEEEccccccccccccEEEEEEccccccEEEEEEEEEEEccccccccccEEEEEEEEEcccccccccccccEEEEEEEEEcccccccEEEEEEEEEEEccccccccccccccccccccccccccccccccccccccccccEEEEcccccccc
Secondary Structure Prediction (SSPRO)
cccccccccEEEEEEEEEccccccccccccccEEEEEEEcccccccEEEcccccccccccccEEEEEccccccEEEEEEEEEEccccccccccccccEEEEEEEHHHHHccccccccEEEEEEEEEcccccccEEEEEEEEEEccccccccccccccccccccccccccccccccccccccccccEEEEEEEcccccc
Coil and Loop (DISEMBL)
mleksssgyrtieltvlsgedlrIDRRLIKKNAFAIVqtdtsfdycttkvdesggshpswnekLVIELPMHARFITVQVQCkskssssgnnnnhnkivgfaripvsdfiggyapeNYLHFLSYRLRnakgdkngiiNVSVRSLKVAAdqhasssnylskaprlnvqgyvpaysgfasgfgapvggvvTGVPVWCANRA
Flexible Loop (DISEMBL)
mleksssgyrtieltvlsgedlriDRRLIKKNAfaivqtdtsfdyCTTKvdesggshpswNEKLVIELPMHARFITVQVQCKSKssssgnnnnhNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRNAKGDKNGIINVSVRSLKVAADQHASssnylskaprlNVQGYVPAYSGFASGFGAPVGGVVTGVPVWCANRA
Low Complexity Region (SEG)
MLEKSSSGYRTIELTVLSGEDLRIDRRLIKKNAFAIVQTDTSFDYCTTKVDESGGSHPSWNEKLVIELPMHARFITVQVQCkskssssgnnnnhnkIVGFARIPVSDFIGGYAPENYLHFLSYRLRNAKGDKNGIINVSVRSLKVAADQHASSSNYLSKAPRLNVQGYVPAYSGFASgfgapvggvvtgvpvWCANRA
Disordered region (IsUnstruct)
*********RTIELTVLSGEDLRIDRRLIKKNAFAIVQTDTSFDYCTTKVDESGGSHPSWNEKLVIELPMHARFITVQVQC*************NKIVGFARIPVSDFIGGYAPENYLHFLSYRLRNAKGDKNGIINVSVRSLKVAA********YLSKAPRLNVQGYVPAYSGFASGFGAPVGGVVTGVPVWCA***
Disordered Region (DISOPRED)
*************LTVLSGEDLRIDRRLIKKNAFAIVQTDTSFDY*TTKVDESGGSHPSWNEKLVIELPMHARFITVQVQCKSKSSSSGNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSY******GDKNGIINVSVRS*******************************************VVTGVPVWCA***
Disordered Region (DISEMBL)
********YRTIELTVLSGEDLRIDRRLIKKNAFAIVQTDTSFDYCTTKVDESGGSHPSWNEKLVIELPMHARFITVQ************NNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRNAKGDKNGIINVSVRSLK***********YLSKAPRLNVQGYVPAYSGFASGFGAPVGGVVTGVPVWCANRA
Disordered Region (DISPRO)
*****SSGYRTIELTVLSGEDLRIDRRLIKKNAFAIVQTDTSFDYCTTKVDESGGSHPSWNEKLVIELPMHARFITVQVQCKSKSSSSGNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRNAKGDKNGIINVSVRSLKVAA**************************G*******PVGGVVTGVPVWCANR*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLEKSSSGYRTIELTVLSGEDLRIDRRLIKKNAFAIVQTDTSFDYCTTKVDESGGSHPSWNEKLVIELPMHARFITVQVQCKSKSSSSGNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRNAKGDKNGIINVSVRSLKVAADQHASSSNYLSKAPRLNVQGYVPAYSGFASGFGAPVGGVVTGVPVWCANRA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	198	2.2.26 [Sep-21-2011]
Q58FX0	207	BON1-associated protein 2	yes	no	0.898	0.859	0.403	3e-33
Q941L2	192	BON1-associated protein 1	no	no	0.808	0.833	0.364	1e-23

>sp|Q58FX0|BAP2_ARATH BON1-associated protein 2 OS=Arabidopsis thaliana GN=BAP2 PE=1 SV=1

 Score =  141 bits (356), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 82/203 (40%), Positives = 122/203 (60%), Gaps = 25/203 (12%)

Query: 10  RTIELTVLSGEDLRIDRRLIKKNAFAIVQTDTSFDYCTTKVDESGGSHPSWNEKLVIELP 69
           R++E+ V+S E L++DR+ +KK  +++V+ D       +KVDE GGS+P W ++  +E+P
Sbjct: 8   RSLEIEVISAEGLKVDRKPLKKKTYSVVRIDEK--SWASKVDELGGSYPIWKDRFDMEMP 65

Query: 70  MHA--RFITVQVQCKSKSSSSGNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRN 127
           ++A  RFI+++V  ++  S SG + N    VG+A+IPV+DF+GG+AP+ +L+FLSYRLR+
Sbjct: 66  INASVRFISIEVYYRT--SGSGRDKN----VGYAKIPVTDFMGGFAPQGHLNFLSYRLRD 119

Query: 128 AKGDKNGIINVSVR---------------SLKVAADQHASSSNYLSKAPRLNVQGYVPAY 172
             GDK GI+NVS+                S  VA   +A+ S   + A R N        
Sbjct: 120 EYGDKCGIVNVSIMVKPDGNDHKSSLPSSSFAVAPVDYAACSWQATAAARNNQMWRPRTS 179

Query: 173 SGFASGFGAPVGGVVTGVPVWCA 195
           S   S  G   G VVTGVPVWCA
Sbjct: 180 SSMVSTAGYGGGRVVTGVPVWCA 202

Negative regulator of cell death and defense responses. Exhibits calcium-dependent phospholipid binding properties.
Arabidopsis thaliana (taxid: 3702)

>sp|Q941L2|BAP1_ARATH BON1-associated protein 1 OS=Arabidopsis thaliana GN=BAP1 PE=1 SV=1

 Score =  109 bits (272), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 70/192 (36%), Positives = 108/192 (56%), Gaps = 32/192 (16%)

Query: 10  RTIELTVLSGEDLRIDRRLIKKNAFAIVQTDTSFDYC-TTKVDESGGSHPSWNEKLVIEL 68
           +T+E+ + S E L+++RR IKK  FA+V+ D   + C  + +DES  S+P+WN K  + +
Sbjct: 18  KTLEIDLRSAEGLKLNRRPIKKKTFAVVKID---EKCRKSNLDESRRSNPTWNYKSEMPI 74

Query: 69  PMHARFITVQVQCKSKSSSSGNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRNA 128
             + +FI ++V  ++ S        H+K +G A+IP +DF+G Y+PE +L+FLSYRLR+ 
Sbjct: 75  NGNEQFIFIEVFYRTGSG-------HDKKIGEAKIPTNDFMGRYSPEGHLNFLSYRLRDE 127

Query: 129 KGDKNGIINVSV-------RSLKVAADQHASSSNYLSKAPRLNVQGYVPAYSGFASGFGA 181
            GDK GI+N+S+       R     + Q A +  +    PRL              G+G 
Sbjct: 128 FGDKCGIVNLSILVKSDPTRDYGACSSQAAVTGLW---RPRLETAS--------IDGYG- 175

Query: 182 PVGGVVTGVPVW 193
             G  VTGVPVW
Sbjct: 176 --GRTVTGVPVW 185

Negative regulator of cell death and defense responses. Exhibits calcium-dependent phospholipid binding properties.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	198
351723595	179	uncharacterized protein LOC100527075 [Gl	0.813	0.899	0.489	9e-41
255541484	179	conserved hypothetical protein [Ricinus	0.863	0.955	0.451	7e-40
255541486	196	conserved hypothetical protein [Ricinus	0.888	0.897	0.466	2e-38
224067852	183	predicted protein [Populus trichocarpa]	0.858	0.928	0.441	5e-38
388513941	171	unknown [Lotus japonicus]	0.787	0.912	0.463	6e-38
225453712	176	PREDICTED: BON1-associated protein 2-lik	0.611	0.687	0.587	8e-38
380706600	176	BAP1 [Vitis vinifera]	0.611	0.687	0.587	8e-38
147802422	176	hypothetical protein VITISV_017490 [Viti	0.611	0.687	0.580	3e-37
356520454	177	PREDICTED: BON1-associated protein 2-lik	0.813	0.909	0.479	1e-36
351724213	175	uncharacterized protein LOC100500298 [Gl	0.823	0.931	0.497	1e-36

>gi|351723595|ref|NP_001238308.1| uncharacterized protein LOC100527075 [Glycine max] gi|255631498|gb|ACU16116.1| unknown [Glycine max]

 Score =  172 bits (435), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 95/194 (48%), Positives = 131/194 (67%), Gaps = 33/194 (17%)

Query: 10  RTIELTVLSGEDLRIDRRLIKKNAFAIVQTDTSFDYCTTKVDESGGSHPSWNEKLVIELP 69
           RT+E+TVLS E+L+++++ I+ NAF  VQ+D S D   T VD  GGS+PSWNEKLV+++P
Sbjct: 3   RTVEITVLSAENLQMNKKPIRGNAFVTVQSDASNDTSATTVDSEGGSYPSWNEKLVMDVP 62

Query: 70  MHARFITVQVQCKSKSSSSGNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRNAK 129
           +HARFITV+V+C  K+SS+G+N+     +G ARIPVSDF+GGY PEN LHFLSYRL + K
Sbjct: 63  LHARFITVEVKC--KTSSAGSNS-----IGVARIPVSDFVGGYVPENQLHFLSYRLWDGK 115

Query: 130 GDKNGIINVSVRSLKVA----ADQHASSSNYLSKAPRLNVQGYVPAYSGFASGFGAPVG- 184
             +NG++N+SVR +KVA      QH+ +SN +S +  +                G PV  
Sbjct: 116 VRRNGVVNISVR-VKVAQQQQQQQHSCNSNSMSLSSAVT---------------GVPVAG 159

Query: 185 ----GVVTGVP-VW 193
               GVVTG+P +W
Sbjct: 160 NGSTGVVTGIPAIW 173

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255541484|ref|XP_002511806.1| conserved hypothetical protein [Ricinus communis] gi|223548986|gb|EEF50475.1| conserved hypothetical protein [Ricinus communis]

 Score =  169 bits (427), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 84/186 (45%), Positives = 124/186 (66%), Gaps = 15/186 (8%)

Query: 10  RTIELTVLSGEDLRIDRRLIKKNAFAIVQTDTSFDYCTTKVDESGGSHPSWNEKLVIELP 69
           RT+E+T+ S EDLRIDRR +K N + +V+TD   +   TK+D  GGS+PSWNEKL++++P
Sbjct: 6   RTLEITIFSCEDLRIDRRSVKNNTYVVVRTD-HLNSTATKIDTQGGSYPSWNEKLIVDMP 64

Query: 70  MHARFITVQVQCKSKSSSSGNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRNAK 129
           +H RFIT++ +CK+ S+        ++I+  AR+PV+DF+GGY P+NYL+ LSYRLR+ +
Sbjct: 65  LHERFITLEARCKTASA--------DRIIASARMPVTDFMGGYLPDNYLNILSYRLRDTR 116

Query: 130 GDKNGIINVSVRSLKVAADQHASSSNYLSKAPRLNVQGYVPAYSGFASGFGAPVGGVVTG 189
           G++NGIIN+S++    AAD + S     ++  RL        Y    +G G     VVTG
Sbjct: 117 GERNGIINLSLKVKAAAADYYLS-----TRKKRLPGNTCSSGYPIQNNG-GEKNLDVVTG 170

Query: 190 VPVWCA 195
           +PVW A
Sbjct: 171 IPVWGA 176

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255541486|ref|XP_002511807.1| conserved hypothetical protein [Ricinus communis] gi|223548987|gb|EEF50476.1| conserved hypothetical protein [Ricinus communis]

 Score =  164 bits (415), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 99/212 (46%), Positives = 126/212 (59%), Gaps = 36/212 (16%)

Query: 5   SSSGYRTIELTVLSGEDLRIDRRLIKKNAFAIVQTDTSFDYCTTKVDESGGSHPSWNEKL 64
           S+  +R++E+ VLS E LR+D + +KK+ F +V+ D   +Y +TK D  GGS+PSWNEKL
Sbjct: 3   STGTFRSLEIDVLSAEKLRLDGKSVKKDTFVVVRVDP-VNYKSTKADHQGGSNPSWNEKL 61

Query: 65  VIELPMHARFITVQVQCKSKSSSSGNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYR 124
            I++ MHA FIT++VQCK  S         N+++G A IPVSDF+GGYAPENYLHFLSYR
Sbjct: 62  EIDMSMHAHFITLEVQCKVGSG--------NRVIGIASIPVSDFMGGYAPENYLHFLSYR 113

Query: 125 LRNAKGDKNGIINVSVRSLKVAADQHASSSNYLSKAPRLNVQGYV--PAYSGFASGFGAP 182
           LR+ +G+KNGIINVSV   KV    H          P     GY   P+ SGF  G   P
Sbjct: 114 LRDLRGEKNGIINVSV---KVKGAAHIVIPAGRKDLP----AGYTSSPSSSGF--GLSQP 164

Query: 183 VGGV----------------VTGVPVWCANRA 198
             GV                   VPVWCA+RA
Sbjct: 165 TWGVPARQNNFYDGGVVTGVPVPVPVWCASRA 196

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224067852|ref|XP_002302565.1| predicted protein [Populus trichocarpa] gi|222844291|gb|EEE81838.1| predicted protein [Populus trichocarpa]

 Score =  162 bits (411), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 90/204 (44%), Positives = 126/204 (61%), Gaps = 34/204 (16%)

Query: 2   LEKSSSGYRTIELTVLSGEDLRIDRRLIKKNAFAIVQTDTSFDYCTTKVDESGGSHPSWN 61
           ++K     RTIE+T+LS E+L +DR+ +KKNA+ I + D   +Y +TK D  GG +PSWN
Sbjct: 1   MDKGHKASRTIEITILSAENLSLDRKSVKKNAYVIARID-PINYGSTKADFEGGCNPSWN 59

Query: 62  EKLVIELPMHARFITVQVQCKSKSSSSGNNNNHNKIVGFARIPVSDFIGGYAPENYLHFL 121
           EKL +++P   RFIT++V+CK+ S         +++VG A +P+SD  G Y PE++LHFL
Sbjct: 60  EKLTLDMPFQTRFITLEVKCKTSSG--------DRVVGTASLPISDISGDYTPESHLHFL 111

Query: 122 SYRLRNAKGDKNGIINVSVRSLKVAADQHASSSNYLSKAPRLNVQGYVPAYSGFASGFGA 181
           SYRLR+++G+KNGIINVS R +KV   Q  S S  ++K P  N         G +S +  
Sbjct: 112 SYRLRDSRGEKNGIINVSAR-VKV---QVESMSPAVTKNPMRN---------GCSSSWQQ 158

Query: 182 PV------------GGVVTGVPVW 193
           P             GGVVTGVPVW
Sbjct: 159 PTLGVPAGHQKRYYGGVVTGVPVW 182

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388513941|gb|AFK45032.1| unknown [Lotus japonicus]

 Score =  162 bits (411), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 88/190 (46%), Positives = 122/190 (64%), Gaps = 34/190 (17%)

Query: 10  RTIELTVLSGEDLRIDRRLIKKNAFAIVQTDTSFDYCTTKVDESGGSHPSWNEKLVIELP 69
           RTIE+T+LS EDL+++R+ IK  AF  VQ+D S +  TTKVD + GS+PSWNEK+V+++P
Sbjct: 3   RTIEITILSAEDLQVNRKHIKGKAFVEVQSDASSEVGTTKVDSNNGSYPSWNEKIVMDVP 62

Query: 70  MHARFITVQVQCKSKSSSSGNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRNAK 129
           +H+RFIT+ V+C++ S++S +       +G ARIPV +F+GGY PEN L FLSYRL ++K
Sbjct: 63  LHSRFITIDVRCRTSSTASNS-------IGMARIPVCEFVGGYVPENQLQFLSYRLWDSK 115

Query: 130 GDKNGIINVSVRSLKVAADQHASSSNYLSKAPRLNVQGYVPAYSGFASGFGAPVG----- 184
             +NG+IN+SVR   V    H+ S             G +P      S  G PV      
Sbjct: 116 VRRNGVINISVR---VKVSHHSCS-------------GSIP-----LSATGVPVAGNGTT 154

Query: 185 GVVTGVP-VW 193
           GVVTG+P VW
Sbjct: 155 GVVTGIPAVW 164

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225453712|ref|XP_002271138.1| PREDICTED: BON1-associated protein 2-like [Vitis vinifera]

 Score =  162 bits (409), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 77/131 (58%), Positives = 104/131 (79%), Gaps = 10/131 (7%)

Query: 12  IELTVLSGEDLRID-RRLIKKNAFAIVQTDTSFDYCTTKVDESGGSHPSWNEKLVIELPM 70
           +E+TV+SGEDLR++ RR +KKNAFA+V+TD S +Y  T+VD  GGS+ +WNEKLV+ LP 
Sbjct: 8   VEITVISGEDLRVNSRRPVKKNAFAVVRTD-SKNYQMTRVDTEGGSYSTWNEKLVMNLPA 66

Query: 71  HARFITVQVQCKSKSSSSGNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRNAKG 130
           HARF+TV+V CK+ S         ++++G AR+PVSDF GG  PE+YLHFLSYRLR+ KG
Sbjct: 67  HARFLTVEVHCKTSSG--------DRVIGTARVPVSDFSGGSTPESYLHFLSYRLRDDKG 118

Query: 131 DKNGIINVSVR 141
           ++NGI+N+SVR
Sbjct: 119 ERNGIVNLSVR 129

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|380706600|gb|AFD97530.1| BAP1 [Vitis vinifera]

 Score =  162 bits (409), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 77/131 (58%), Positives = 104/131 (79%), Gaps = 10/131 (7%)

Query: 12  IELTVLSGEDLRID-RRLIKKNAFAIVQTDTSFDYCTTKVDESGGSHPSWNEKLVIELPM 70
           +E+TV+SGEDLR++ RR +KKNAFA+V+TD S +Y  T+VD  GGS+ +WNEKLV+ LP 
Sbjct: 8   VEITVISGEDLRVNSRRPVKKNAFAVVRTD-SKNYQMTRVDTEGGSYSTWNEKLVMNLPA 66

Query: 71  HARFITVQVQCKSKSSSSGNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRNAKG 130
           HARF+TV+V CK+ S         ++++G AR+PVSDF GG  PE+YLHFLSYRLR+ KG
Sbjct: 67  HARFLTVEVHCKTSSG--------DRVIGTARVPVSDFSGGSTPESYLHFLSYRLRDDKG 118

Query: 131 DKNGIINVSVR 141
           ++NGI+N+SVR
Sbjct: 119 ERNGIVNLSVR 129

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147802422|emb|CAN72571.1| hypothetical protein VITISV_017490 [Vitis vinifera]

 Score =  160 bits (404), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 76/131 (58%), Positives = 103/131 (78%), Gaps = 10/131 (7%)

Query: 12  IELTVLSGEDLRID-RRLIKKNAFAIVQTDTSFDYCTTKVDESGGSHPSWNEKLVIELPM 70
           +E+TV+SGEDLR++ RR +KKNAFA+V+TD S +Y  T+VD  GGS+ +WNEKLV+ LP 
Sbjct: 8   VEITVISGEDLRVNSRRPVKKNAFAVVRTD-SKNYQMTRVDTEGGSYSTWNEKLVMNLPA 66

Query: 71  HARFITVQVQCKSKSSSSGNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRNAKG 130
           HARF+TV+V CK+ S         ++++G AR+PVSDF GG  PE+Y HFLSYRLR+ KG
Sbjct: 67  HARFLTVEVHCKTSSG--------DRVIGTARVPVSDFSGGSTPESYXHFLSYRLRDDKG 118

Query: 131 DKNGIINVSVR 141
           ++NGI+N+SVR
Sbjct: 119 ERNGIVNLSVR 129

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356520454|ref|XP_003528877.1| PREDICTED: BON1-associated protein 2-like [Glycine max]

 Score =  158 bits (400), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 92/192 (47%), Positives = 122/192 (63%), Gaps = 31/192 (16%)

Query: 10  RTIELTVLSGEDLRIDRRLIKKNAFAIVQTDTSFDYCTTKVDESGGSHPSWNEKLVIELP 69
           RT+E+T+LS E+L+++++ I+ N F  VQ+D S D   TKVD  GGS+PSWNEKLV++ P
Sbjct: 3   RTVEITILSAENLQMNKKPIRGNTFVTVQSDASSDTSATKVDSEGGSYPSWNEKLVMDAP 62

Query: 70  MHARFITVQVQCKSKSSSSGNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRNAK 129
           +HARFITV+V+CK+ S+ S       K VG ARIPVSDF+GGY PEN LHFLSYRL + K
Sbjct: 63  LHARFITVEVKCKTSSTGS-------KSVGVARIPVSDFVGGYVPENQLHFLSYRLWDGK 115

Query: 130 GDKNGIINVSVRSL--KVAADQHASSSNYLSKAPRLNVQGYVPAYSGFASGFGAPVG--- 184
             +NG++NVSVR    +    QH  +SN  S                 ++  G PV    
Sbjct: 116 VRRNGVVNVSVRVKVAQQQPQQHLCNSNSTS----------------LSAVTGVPVAGNR 159

Query: 185 --GVVTGVP-VW 193
             GVVTG+P +W
Sbjct: 160 STGVVTGIPAIW 171

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351724213|ref|NP_001236026.1| uncharacterized protein LOC100500298 [Glycine max] gi|255629968|gb|ACU15336.1| unknown [Glycine max]

 Score =  158 bits (399), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 93/187 (49%), Positives = 127/187 (67%), Gaps = 24/187 (12%)

Query: 10  RTIELTVLSGEDLRIDRRLIKKNAFAIVQTDTSFDY-CTTKVDESGGSHPSWNEKLVIEL 68
           RT+E+T+LS E+L+++R+ I+ + F  VQ+DTS D    TKVD  GGS+PSWNEK+V+++
Sbjct: 3   RTVEMTILSAENLQMNRKSIRGSTFVTVQSDTSSDTSAATKVDSEGGSYPSWNEKVVMDV 62

Query: 69  PMHARFITVQVQCKSKSSSSGNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRNA 128
           P+HARFITV+V+CK+ SS S +          A+IPVSDFIGGY PEN LHFLSYRL + 
Sbjct: 63  PLHARFITVEVKCKTSSSGSSSVGV-------AQIPVSDFIGGYMPENQLHFLSYRLWDG 115

Query: 129 KGDKNGIINVSVRSLKVAADQHASSS-NYLSKAPRLNVQGYVPAYSGFASGFGAPVGGVV 187
           K  +NG+IN+SVR +KVA  +H+S + N +S          + A +G       P  GVV
Sbjct: 116 KVRRNGVINISVR-VKVA--EHSSCNLNSMS----------LSAVTGVPVAGNGPT-GVV 161

Query: 188 TGVP-VW 193
           TG+P VW
Sbjct: 162 TGIPAVW 168

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	198
TAIR|locus:2050782	207	BAP2 "AT2G45760" [Arabidopsis	0.722	0.690	0.403	1.4e-25
TAIR|locus:2098931	192	BAP1 "BON association protein	0.611	0.630	0.386	6.5e-19
TAIR|locus:2041654	401	AT2G13350 "AT2G13350" [Arabido	0.606	0.299	0.248	2.9e-07
TAIR|locus:2197868	601	AT1G04540 "AT1G04540" [Arabido	0.636	0.209	0.260	0.00015
TAIR|locus:2172828	219	AT5G23950 "AT5G23950" [Arabido	0.318	0.287	0.378	0.0006

TAIR|locus:2050782 BAP2 "AT2G45760" [Arabidopsis thaliana (taxid:3702)]

 Score = 290 (107.1 bits), Expect = 1.4e-25, P = 1.4e-25
 Identities = 63/156 (40%), Positives = 101/156 (64%)

Query:    10 RTIELTVLSGEDLRIDRRLIKKNAFAIVQTDTSFDYCTTKVDESGGSHPSWNEKLVIELP 69
             R++E+ V+S E L++DR+ +KK  +++V+ D       +KVDE GGS+P W ++  +E+P
Sbjct:     8 RSLEIEVISAEGLKVDRKPLKKKTYSVVRIDEKS--WASKVDELGGSYPIWKDRFDMEMP 65

Query:    70 MHA--RFITVQVQCXXXXXXXXXXXXXXXIVGFARIPVSDFIGGYAPENYLHFLSYRLRN 127
             ++A  RFI+++V                  VG+A+IPV+DF+GG+AP+ +L+FLSYRLR+
Sbjct:    66 INASVRFISIEVYYRTSGSGRDKN------VGYAKIPVTDFMGGFAPQGHLNFLSYRLRD 119

Query:   128 AKGDKNGIINVSVRSLKVAADQHASS--SNYLSKAP 161
               GDK GI+NVS+  +K   + H SS  S+  + AP
Sbjct:   120 EYGDKCGIVNVSIM-VKPDGNDHKSSLPSSSFAVAP 154

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009693 "ethylene biosynthetic process" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

TAIR|locus:2098931 BAP1 "BON association protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 227 (85.0 bits), Expect = 6.5e-19, P = 6.5e-19
 Identities = 51/132 (38%), Positives = 82/132 (62%)

Query:    10 RTIELTVLSGEDLRIDRRLIKKNAFAIVQTDTSFDYCT-TKVDESGGSHPSWNEKLVIEL 68
             +T+E+ + S E L+++RR IKK  FA+V+ D   + C  + +DES  S+P+WN K  + +
Sbjct:    18 KTLEIDLRSAEGLKLNRRPIKKKTFAVVKID---EKCRKSNLDESRRSNPTWNYKSEMPI 74

Query:    69 PMHARFITVQVQCXXXXXXXXXXXXXXXIVGFARIPVSDFIGGYAPENYLHFLSYRLRNA 128
               + +FI ++V                  +G A+IP +DF+G Y+PE +L+FLSYRLR+ 
Sbjct:    75 NGNEQFIFIEV-------FYRTGSGHDKKIGEAKIPTNDFMGRYSPEGHLNFLSYRLRDE 127

Query:   129 KGDKNGIINVSV 140
              GDK GI+N+S+
Sbjct:   128 FGDKCGIVNLSI 139

GO:0005739 "mitochondrion" evidence=ISM

GO:0005515 "protein binding" evidence=IPI

GO:0009266 "response to temperature stimulus" evidence=IEP

GO:0019725 "cellular homeostasis" evidence=IPI

GO:0005543 "phospholipid binding" evidence=IDA

GO:0009408 "response to heat" evidence=IEP

GO:0009409 "response to cold" evidence=IEP

GO:0009611 "response to wounding" evidence=IEP;RCA

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0016020 "membrane" evidence=IDA

GO:0031348 "negative regulation of defense response" evidence=IMP

GO:0009612 "response to mechanical stimulus" evidence=RCA

GO:0009620 "response to fungus" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010286 "heat acclimation" evidence=RCA

TAIR|locus:2041654 AT2G13350 "AT2G13350" [Arabidopsis thaliana (taxid:3702)]

 Score = 125 (49.1 bits), Expect = 2.9e-07, P = 2.9e-07
 Identities = 32/129 (24%), Positives = 61/129 (47%)

Query:    12 IELTVLSGEDLRIDRRLIKKNAFAIVQTDTSFDYCTTKVDESGGSHPSWNEKLVIELPMH 71
             +EL ++S ++L    R +K  A A +  +      TT+VD +GG+ P+WN+K V  L   
Sbjct:    10 LELNIISAQELAPVARCMKTYAIAWIDPERKL---TTRVDNTGGTSPTWNDKFVFRLDEE 66

Query:    72 ARFITVQVQCXXXXXXXXXXXXXXXIVGFARIPVSDFIGGYAPENYLHFLSYRLRNAKGD 131
             A +    +                  VG  +  +SD +   +P + + F++  +  A G 
Sbjct:    67 ALYDATSIVVIEIYALHWFKDIH---VGTVQALISDLV---SPSSAMRFVTLEVLRASGR 120

Query:   132 KNGIINVSV 140
              +G++N++V
Sbjct:   121 PHGLLNIAV 129

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0006944 "cellular membrane fusion" evidence=RCA

TAIR|locus:2197868 AT1G04540 "AT1G04540" [Arabidopsis thaliana (taxid:3702)]

 Score = 113 (44.8 bits), Expect = 0.00015, P = 0.00015
 Identities = 38/146 (26%), Positives = 65/146 (44%)

Query:     9 YRTIELTVLSGEDLRIDRRLIKKNAFAIVQTDTSFDYCTTKVDESGGSHPSWNEKLVIEL 68
             ++ +EL ++S +DL    R  K  A A V ++      TT+VD +GG++P+WN+K V  +
Sbjct:     8 FQLLELNIISAQDLAPVARKTKTYAVAWVHSERKL---TTRVDYNGGTNPTWNDKFVFRV 64

Query:    69 PMHARFITVQVQCXXXXXXXXXXXXXXXIVGFARIPVSDFIG-----GYAPEN--Y---- 117
               +  F+                      VG  R+ +S+ I      GY   N  Y    
Sbjct:    65 --NEEFLYADTSAVVIEIYALHWFRDVH-VGTVRVLISNLIPPNRRPGYRTSNNEYRRTP 121

Query:   118 ---LHFLSYRLRNAKGDKNGIINVSV 140
                + F++ ++R   G   GI+N+ V
Sbjct:   122 PPGMRFVALQVRRTSGRPQGILNIGV 147

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IDA

TAIR|locus:2172828 AT5G23950 "AT5G23950" [Arabidopsis thaliana (taxid:3702)]

 Score = 103 (41.3 bits), Expect = 0.00060, P = 0.00060
 Identities = 25/66 (37%), Positives = 39/66 (59%)

Query:     5 SSSGYRTIELTVLSGEDLR-IDRRLIKKNAFAIVQTDTSFDYCTTKVDESGGSHPSWNEK 63
             SS G R +E+T+ S +D++ ++ R      +A+V  D  F   +T+VDE G +  +WNE 
Sbjct:     2 SSHG-REVEVTISSAKDIKNVNWRNGPNKPYAVVWIDPKFK-SSTRVDEDGNTCTTWNET 59

Query:    64 LVIELP 69
              VI LP
Sbjct:    60 FVIALP 65


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.134   0.396    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      198       168   0.00079  108 3  11 22  0.38    32
                                                     31  0.46    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  5
  No. of states in DFA:  580 (62 KB)
  Total size of DFA:  142 KB (2088 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  12.64u 0.13s 12.77t   Elapsed:  00:00:01
  Total cpu time:  12.64u 0.13s 12.77t   Elapsed:  00:00:01
  Start:  Fri May 10 15:21:34 2013   End:  Fri May 10 15:21:35 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q58FX0	BAP2_ARATH	No assigned EC number	0.4039	0.8989	0.8599	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	198
cd04051	125	cd04051, C2_SRC2_like, C2 domain present in Soybea	2e-37
smart00239	101	smart00239, C2, Protein kinase C conserved region	1e-07
cd00030	102	cd00030, C2, C2 domain	2e-07
pfam00168	85	pfam00168, C2, C2 domain	9e-04

>gnl|CDD|176016 cd04051, C2_SRC2_like, C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins

 Score =  125 bits (316), Expect = 2e-37
 Identities = 43/133 (32%), Positives = 69/133 (51%), Gaps = 13/133 (9%)

Query: 11  TIELTVLSGEDLRIDRRLIKKNAFAIVQTDTSFDYCTTKVDESGGSHPSWNEKLVIELP- 69
           T+E+T++S EDL+      K   +A+V  D S    +T VD  GG++P+WNE L   L  
Sbjct: 1   TLEITIISAEDLKNVNLFGKMKVYAVVWIDPS-HKQSTPVDRDGGTNPTWNETLRFPLDE 59

Query: 70  ----MHARFITVQVQCKSKSSSSGNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRL 125
                    +T++V C+         +  +K++G  R+P+ D + G +P   L FLSY+L
Sbjct: 60  RLLQQGRLALTIEVYCE-------RPSLGDKLIGEVRVPLKDLLDGASPAGELRFLSYQL 112

Query: 126 RNAKGDKNGIINV 138
           R   G   G++N 
Sbjct: 113 RRPSGKPQGVLNF 125

SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 125

>gnl|CDD|214577 smart00239, C2, Protein kinase C conserved region 2 (CalB)

 Score = 47.5 bits (113), Expect = 1e-07
 Identities = 22/109 (20%), Positives = 42/109 (38%), Gaps = 10/109 (9%)

Query: 11  TIELTVLSGEDLRIDRRLIKKNAFAIVQ--TDTSFDYCTTKVDESGGSHPSWNEKLVIEL 68
           T+ + ++S  +L    +  K + +  V    D      T  V  +   +P WNE    E+
Sbjct: 1   TLTVKIISARNLPPKDKGGKSDPYVKVSLDGDPKEKKKTKVVKNTL--NPVWNETFEFEV 58

Query: 69  PMHARFITVQVQCKSKSSSSGNNNNHNKIVGFARIPVSDFIGGYAPENY 117
           P       ++++   K     +    +  +G   IP+SD + G   E  
Sbjct: 59  P-PPELAELEIEVYDK-----DRFGRDDFIGQVTIPLSDLLLGGRHEKL 101

Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotagmins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. Length = 101

>gnl|CDD|175973 cd00030, C2, C2 domain

 Score = 47.1 bits (112), Expect = 2e-07
 Identities = 20/100 (20%), Positives = 39/100 (39%), Gaps = 10/100 (10%)

Query: 12  IELTVLSGEDLRIDRRLIKKNAFAIVQTDTSFDYCTTKVDESGGSHPSWNEKLVIEL-PM 70
           + +TV+   +L       K + +  V       + T  V  +   +P WNE     +   
Sbjct: 1   LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVKNT--LNPVWNETFEFPVLDP 58

Query: 71  HARFITVQVQCKSKSSSSGNNNNHNKIVGFARIPVSDFIG 110
            +  +TV+V  K + S        +  +G   IP+S+ + 
Sbjct: 59  ESDTLTVEVWDKDRFSK-------DDFLGEVEIPLSELLD 91

The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 102

>gnl|CDD|215765 pfam00168, C2, C2 domain

 Score = 36.5 bits (85), Expect = 9e-04
 Identities = 16/92 (17%), Positives = 33/92 (35%), Gaps = 8/92 (8%)

Query: 12  IELTVLSGEDLRIDRRLIKKNAFAIVQ-TDTSFDYCTTKVDESGGSHPSWNEKLVIELPM 70
           + +TV+S ++L       K + +  V       D   TKV +    +P WNE    E+ +
Sbjct: 1   LRVTVISAKNLPPKDLNGKSDPYVKVSLGGQKKDTKKTKVVK-NTLNPVWNETFTFEVTL 59

Query: 71  HARFITVQVQCKSKSSSSGNNNNHNKIVGFAR 102
                 ++++              +  +G   
Sbjct: 60  P-ELAELRIEVYDYDRFG-----KDDFIGEVT 85

Length = 85

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	198
cd04016	121	C2_Tollip C2 domain present in Toll-interacting pr	99.94
cd04051	125	C2_SRC2_like C2 domain present in Soybean genes Re	99.93
cd08681	118	C2_fungal_Inn1p-like C2 domain found in fungal Ing	99.91
cd04019	150	C2C_MCTP_PRT_plant C2 domain third repeat found in	99.91
cd08682	126	C2_Rab11-FIP_classI C2 domain found in Rab11-famil	99.9
cd08379	126	C2D_MCTP_PRT_plant C2 domain fourth repeat found i	99.9
cd04042	121	C2A_MCTP_PRT C2 domain first repeat found in Multi	99.89
cd04022	127	C2A_MCTP_PRT_plant C2 domain first repeat found in	99.89
cd04015	158	C2_plant_PLD C2 domain present in plant phospholip	99.89
cd08378	121	C2B_MCTP_PRT_plant C2 domain second repeat found i	99.89
cd04033	133	C2_NEDD4_NEDD4L C2 domain present in the Human neu	99.89
cd08375	136	C2_Intersectin C2 domain present in Intersectin. A	99.89
cd08678	126	C2_C21orf25-like C2 domain found in the Human chro	99.88
cd04044	124	C2A_Tricalbin-like C2 domain first repeat present	99.88
cd08377	119	C2C_MCTP_PRT C2 domain third repeat found in Multi	99.87
cd08401	121	C2A_RasA2_RasA3 C2 domain first repeat present in	99.87
cd04046	126	C2_Calpain C2 domain present in Calpain proteins.	99.86
cd08400	126	C2_Ras_p21A1 C2 domain present in RAS p21 protein	99.86
cd04025	123	C2B_RasA1_RasA4 C2 domain second repeat present in	99.86
cd04054	121	C2A_Rasal1_RasA4 C2 domain first repeat present in	99.86
cd04014	132	C2_PKC_epsilon C2 domain in Protein Kinase C (PKC)	99.86
cd04024	128	C2A_Synaptotagmin-like C2 domain first repeat pres	99.85
cd08376	116	C2B_MCTP_PRT C2 domain second repeat found in Mult	99.85
cd08382	123	C2_Smurf-like C2 domain present in Smad ubiquitina	99.85
KOG1030	168	consensus Predicted Ca2+-dependent phospholipid-bi	99.85
cd04036	119	C2_cPLA2 C2 domain present in cytosolic PhosphoLip	99.84
cd08391	121	C2A_C2C_Synaptotagmin_like C2 domain first and thi	99.84
cd04049	124	C2_putative_Elicitor-responsive_gene C2 domain pre	99.83
cd08373	127	C2A_Ferlin C2 domain first repeat in Ferlin. Ferli	99.82
cd04027	127	C2B_Munc13 C2 domain second repeat in Munc13 (mamm	99.82
cd08395	120	C2C_Munc13 C2 domain third repeat in Munc13 (mamma	99.82
cd04045	120	C2C_Tricalbin-like C2 domain third repeat present	99.82
cd08381	122	C2B_PI3K_class_II C2 domain second repeat present	99.82
cd04050	105	C2B_Synaptotagmin-like C2 domain second repeat pre	99.81
cd04039	108	C2_PSD C2 domain present in Phosphatidylserine dec	99.81
cd08394	127	C2A_Munc13 C2 domain first repeat in Munc13 (mamma	99.81
cd04040	115	C2D_Tricalbin-like C2 domain fourth repeat present	99.81
cd04017	135	C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferl	99.8
cd04041	111	C2A_fungal C2 domain first repeat; fungal group. C	99.8
cd04021	125	C2_E3_ubiquitin_ligase C2 domain present in E3 ubi	99.8
cd00275	128	C2_PLC_like C2 domain present in Phosphoinositide-	99.8
cd08688	110	C2_KIAA0528-like C2 domain found in the Human KIAA	99.8
cd04043	126	C2_Munc13_fungal C2 domain in Munc13 (mammalian un	99.8
cd04011	111	C2B_Ferlin C2 domain second repeat in Ferlin. Ferl	99.8
cd08392	128	C2A_SLP-3 C2 domain first repeat present in Synapt	99.8
cd08677	118	C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a	99.79
cd04029	125	C2A_SLP-4_5 C2 domain first repeat present in Syna	99.79
cd08385	124	C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repe	99.79
cd04028	146	C2B_RIM1alpha C2 domain second repeat contained in	99.79
cd08393	125	C2A_SLP-1_2 C2 domain first repeat present in Syna	99.79
cd04010	148	C2B_RasA3 C2 domain second repeat present in RAS p	99.78
PLN03008	868	Phospholipase D delta	99.78
cd08387	124	C2A_Synaptotagmin-8 C2A domain first repeat presen	99.78
cd08685	119	C2_RGS-like C2 domain of the Regulator Of G-Protei	99.78
cd04038	145	C2_ArfGAP C2 domain present in Arf GTPase Activati	99.78
cd04030	127	C2C_KIAA1228 C2 domain third repeat present in unc	99.77
cd08691	137	C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-li	99.77
cd08690	155	C2_Freud-1 C2 domain found in 5' repressor element	99.77
cd08521	123	C2A_SLP C2 domain first repeat present in Synaptot	99.77
cd08383	117	C2A_RasGAP C2 domain (first repeat) of Ras GTPase	99.76
cd04031	125	C2A_RIM1alpha C2 domain first repeat contained in	99.76
cd04013	146	C2_SynGAP_like C2 domain present in Ras GTPase act	99.76
cd08680	124	C2_Kibra C2 domain found in Human protein Kibra. K	99.76
cd08386	125	C2A_Synaptotagmin-7 C2A domain first repeat presen	99.75
cd08388	128	C2A_Synaptotagmin-4-11 C2A domain first repeat pre	99.75
cd08389	124	C2A_Synaptotagmin-14_16 C2A domain first repeat pr	99.75
cd08390	123	C2A_Synaptotagmin-15-17 C2A domain first repeat pr	99.74
cd04018	151	C2C_Ferlin C2 domain third repeat in Ferlin. Ferli	99.74
cd04052	111	C2B_Tricalbin-like C2 domain second repeat present	99.74
cd04032	127	C2_Perforin C2 domain of Perforin. Perforin contai	99.74
cd04009	133	C2B_Munc13-like C2 domain second repeat in Munc13	99.72
cd08675	137	C2B_RasGAP C2 domain second repeat of Ras GTPase a	99.72
cd04020	162	C2B_SLP_1-2-3-4 C2 domain second repeat present in	99.71
cd00276	134	C2B_Synaptotagmin C2 domain second repeat present	99.71
cd08676	153	C2A_Munc13-like C2 domain first repeat in Munc13 (	99.71
cd04026	131	C2_PKC_alpha_gamma C2 domain in Protein Kinase C (	99.7
cd08404	136	C2B_Synaptotagmin-4 C2 domain second repeat presen	99.7
cd08384	133	C2B_Rabphilin_Doc2 C2 domain second repeat present	99.69
cd04037	124	C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferli	99.69
cd04035	123	C2A_Rabphilin_Doc2 C2 domain first repeat present	99.68
cd08407	138	C2B_Synaptotagmin-13 C2 domain second repeat prese	99.68
cd08402	136	C2B_Synaptotagmin-1 C2 domain second repeat presen	99.68
cd08406	136	C2B_Synaptotagmin-12 C2 domain second repeat prese	99.68
cd08405	136	C2B_Synaptotagmin-7 C2 domain second repeat presen	99.68
cd08403	134	C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repe	99.68
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	99.67
cd08410	135	C2B_Synaptotagmin-17 C2 domain second repeat prese	99.66
cd08686	118	C2_ABR C2 domain in the Active BCR (Breakpoint clu	99.66
cd08409	137	C2B_Synaptotagmin-15 C2 domain second repeat prese	99.66
cd08408	138	C2B_Synaptotagmin-14_16 C2 domain second repeat pr	99.65
cd04048	120	C2A_Copine C2 domain first repeat in Copine. There	99.65
PLN02270	808	phospholipase D alpha	99.63
cd08692	135	C2B_Tac2-N C2 domain second repeat found in Tac2-N	99.62
PF00168	85	C2: C2 domain; InterPro: IPR000008 The C2 domain i	99.62
KOG1028	421	consensus Ca2+-dependent phospholipid-binding prot	99.57
cd04047	110	C2B_Copine C2 domain second repeat in Copine. Ther	99.56
COG5038	1227	Ca2+-dependent lipid-binding protein, contains C2	99.55
smart00239	101	C2 Protein kinase C conserved region 2 (CalB). Ca2	99.54
PLN02223	537	phosphoinositide phospholipase C	99.52
cd00030	102	C2 C2 domain. The C2 domain was first identified i	99.51
KOG1011	1283	consensus Neurotransmitter release regulator, UNC-	99.49
KOG0696	683	consensus Serine/threonine protein kinase [Signal	99.47
PLN02952	599	phosphoinositide phospholipase C	99.47
PLN02228	567	Phosphoinositide phospholipase C	99.38
PLN02230	598	phosphoinositide phospholipase C 4	99.37
PLN02222	581	phosphoinositide phospholipase C 2	99.34
cd08374	133	C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferli	99.33
cd08689	109	C2_fungal_Pkc1p C2 domain found in protein kinase	99.32
KOG2059	800	consensus Ras GTPase-activating protein [Signal tr	99.32
KOG0169	746	consensus Phosphoinositide-specific phospholipase	99.31
PLN02352	758	phospholipase D epsilon	99.31
COG5038	1227	Ca2+-dependent lipid-binding protein, contains C2	99.24
KOG1028	421	consensus Ca2+-dependent phospholipid-binding prot	99.12
KOG1264	1267	consensus Phospholipase C [Lipid transport and met	98.97
KOG1031	1169	consensus Predicted Ca2+-dependent phospholipid-bi	98.94
KOG1328	1103	consensus Synaptic vesicle protein BAIAP3, involve	98.73
KOG1328	1103	consensus Synaptic vesicle protein BAIAP3, involve	98.54
KOG0905	1639	consensus Phosphoinositide 3-kinase [Signal transd	98.31
KOG2059	800	consensus Ras GTPase-activating protein [Signal tr	98.22
KOG1265	1189	consensus Phospholipase C [Lipid transport and met	98.21
cd08683	143	C2_C2cd3 C2 domain found in C2 calcium-dependent d	98.11
KOG3837	523	consensus Uncharacterized conserved protein, conta	98.02
PLN02964	644	phosphatidylserine decarboxylase	97.92
KOG1011	1283	consensus Neurotransmitter release regulator, UNC-	97.71
PF10358	143	NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins;	97.71
PF11618	107	DUF3250: Protein of unknown function (DUF3250); In	97.68
KOG1013	362	consensus Synaptic vesicle protein rabphilin-3A [I	97.68
KOG1326	1105	consensus Membrane-associated protein FER-1 and re	97.57
KOG1013	362	consensus Synaptic vesicle protein rabphilin-3A [I	97.37
cd08684	103	C2A_Tac2-N C2 domain first repeat found in Tac2-N	97.36
KOG2060	405	consensus Rab3 effector RIM1 and related proteins,	97.28
PF12416	340	DUF3668: Cep120 protein; InterPro: IPR022136 This	97.22
cd08693	173	C2_PI3K_class_I_beta_delta C2 domain present in cl	97.16
cd08398	158	C2_PI3K_class_I_alpha C2 domain present in class I	97.15
PF15627	156	CEP76-C2: CEP76 C2 domain	96.79
cd08380	156	C2_PI3K_like C2 domain present in phosphatidylinos	96.79
cd08687	98	C2_PKN-like C2 domain in Protein kinase C-like (PK	96.77
cd04012	171	C2A_PI3K_class_II C2 domain first repeat present i	96.51
KOG1452	442	consensus Predicted Rho GTPase-activating protein	96.25
PF14429	184	DOCK-C2: C2 domain in Dock180 and Zizimin proteins	96.2
cd08694	196	C2_Dock-A C2 domains found in Dedicator Of CytoKin	96.1
KOG1327	529	consensus Copine [Signal transduction mechanisms]	96.05
cd08399	178	C2_PI3K_class_I_gamma C2 domain present in class I	96.03
cd08695	189	C2_Dock-B C2 domains found in Dedicator Of CytoKin	95.92
KOG1326	1105	consensus Membrane-associated protein FER-1 and re	95.89
cd08397	159	C2_PI3K_class_III C2 domain present in class III p	95.65
PF00792	142	PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: I	95.33
cd08679	178	C2_DOCK180_related C2 domains found in Dedicator O	94.93
cd08696	179	C2_Dock-C C2 domains found in Dedicator Of CytoKin	94.47
smart00142	100	PI3K_C2 Phosphoinositide 3-kinase, region postulat	93.84
cd08697	185	C2_Dock-D C2 domains found in Dedicator Of CytoKin	93.21
PF15625	168	CC2D2AN-C2: CC2D2A N-terminal C2 domain	93.04
KOG1329	887	consensus Phospholipase D1 [Lipid transport and me	92.07
PTZ00447	508	apical membrane antigen 1-like protein; Provisiona	88.51
PF06219	460	DUF1005: Protein of unknown function (DUF1005); In	88.23
PF14924	112	DUF4497: Protein of unknown function (DUF4497)	88.22
PF07162	168	B9-C2: Ciliary basal body-associated, B9 protein;	85.0
KOG3543	1218	consensus Ca2+-dependent activator protein [Signal	82.88
PF14186	147	Aida_C2: Cytoskeletal adhesion; PDB: 2QZQ_A 2QZ5_A	80.83
KOG1327	529	consensus Copine [Signal transduction mechanisms]	80.69

>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip)

Probab=99.94  E-value=4.7e-26  Score=174.49  Aligned_cols=117  Identities=17%  Similarity=0.325  Sum_probs=101.3

Q ss_pred             eEEEEEEEEeeCCCCCCCCCcCCcEEEEEECCCCcEEEeeeecCCCCCCeeeeEEEEEecCCCcEEEEEEEeCCCCCCCC
Q 040360           10 RTIELTVLSGEDLRIDRRLIKKNAFAIVQTDTSFDYCTTKVDESGGSHPSWNEKLVIELPMHARFITVQVQCKSKSSSSG   89 (198)
Q Consensus        10 ~~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~~~~~~T~v~~~~g~nP~WNE~f~f~v~~~~~~L~~eV~~~~~~~~~g   89 (198)
                      |+|+|+|++|++|+..+ ++++||||+|+++.  ++++|+++.+++.||+|||+|.|.++.....|.|+|||++.   ++
T Consensus         2 g~L~v~v~~Ak~l~~~~-~g~sDPYv~i~lg~--~~~kT~v~~~~~~nP~WNe~F~f~v~~~~~~l~~~V~d~d~---~~   75 (121)
T cd04016           2 GRLSITVVQAKLVKNYG-LTRMDPYCRIRVGH--AVYETPTAYNGAKNPRWNKTIQCTLPEGVDSIYIEIFDERA---FT   75 (121)
T ss_pred             cEEEEEEEEccCCCcCC-CCCCCceEEEEECC--EEEEeEEccCCCCCCccCeEEEEEecCCCcEEEEEEEeCCC---Cc
Confidence            78999999999998766 78999999999988  88899999887799999999999998766789999999998   67


Q ss_pred             CCCCCCceeEEEEEeCc-cccCCCCCCCceEeEEEEeeCCCCC-ccEEEEEEEE
Q 040360           90 NNNNHNKIVGFARIPVS-DFIGGYAPENYLHFLSYRLRNAKGD-KNGIINVSVR  141 (198)
Q Consensus        90 ~~~~~d~~IG~a~IpL~-~l~~~~~~~~~~~~~sy~L~~~~Gk-~~G~I~lsi~  141 (198)
                      +    |++||++.|+|. .+..+..     ...||+|...+|+ ..|.|||+++
T Consensus        76 ~----dd~iG~~~i~l~~~~~~g~~-----~~~W~~L~~~~~~~~~g~i~l~l~  120 (121)
T cd04016          76 M----DERIAWTHITIPESVFNGET-----LDDWYSLSGKQGEDKEGMINLVFS  120 (121)
T ss_pred             C----CceEEEEEEECchhccCCCC-----ccccEeCcCccCCCCceEEEEEEe
Confidence            3    899999999997 4665532     3469999876664 6899999987

Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian

>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins

Probab=99.93  E-value=1.4e-25  Score=170.65  Aligned_cols=120  Identities=36%  Similarity=0.643  Sum_probs=104.5

Q ss_pred             EEEEEEEEeeCCCCCCCCCcCCcEEEEEECCCCcEEEeeeecCCCCCCeeeeEEEEEecCC-----CcEEEEEEEeCCCC
Q 040360           11 TIELTVLSGEDLRIDRRLIKKNAFAIVQTDTSFDYCTTKVDESGGSHPSWNEKLVIELPMH-----ARFITVQVQCKSKS   85 (198)
Q Consensus        11 ~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~~~~~~T~v~~~~g~nP~WNE~f~f~v~~~-----~~~L~~eV~~~~~~   85 (198)
                      +|+|+|++|++|+..+..+++||||+|++++ .++++|+++++++.||.|||+|.|.++..     ...|.|+|||++. 
T Consensus         1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~-~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~-   78 (125)
T cd04051           1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDP-SHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERP-   78 (125)
T ss_pred             CEEEEEEEcccCCCCCcccCCceEEEEEECC-CcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCC-
Confidence            5899999999999877788999999999987 57789999877679999999999999765     5799999999886 


Q ss_pred             CCCCCCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEeeCCCCCccEEEEE
Q 040360           86 SSSGNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRNAKGDKNGIINV  138 (198)
Q Consensus        86 ~~~g~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~~~Gk~~G~I~l  138 (198)
                        +++    |++||++.|+|.++..+...+...+..||+|++++|+++|+|||
T Consensus        79 --~~~----~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~~g~~~G~~~~  125 (125)
T cd04051          79 --SLG----DKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPSGKPQGVLNF  125 (125)
T ss_pred             --CCC----CCcEEEEEEEHHHhhcccCCCCcceeEEEEeECCCCCcCeEEeC
Confidence              553    89999999999999987633324578899999999999999986

SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such

>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins

Probab=99.91  E-value=1.3e-23  Score=158.17  Aligned_cols=117  Identities=24%  Similarity=0.362  Sum_probs=100.5

Q ss_pred             eEEEEEEEEeeCCCCCCCCCcCCcEEEEEECCCCcEEEeeeecCCCCCCeeeeEEEEEecC-CCcEEEEEEEeCCCCCCC
Q 040360           10 RTIELTVLSGEDLRIDRRLIKKNAFAIVQTDTSFDYCTTKVDESGGSHPSWNEKLVIELPM-HARFITVQVQCKSKSSSS   88 (198)
Q Consensus        10 ~~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~~~~~~T~v~~~~g~nP~WNE~f~f~v~~-~~~~L~~eV~~~~~~~~~   88 (198)
                      |+|+|+|++|++|+..+..+++||||+|.+++  .+.+|+++.+++.||.|||.|.|.++. ....|.|+|||++.   .
T Consensus         1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~--~~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~---~   75 (118)
T cd08681           1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGG--VTKKTKTDFRGGQHPEWDEELRFEITEDKKPILKVAVFDDDK---R   75 (118)
T ss_pred             CEEEEEEEEccCCCCCCcCCCCCceEEEEECC--CccccccccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCC---C
Confidence            58999999999998877888999999999998  778999887656899999999999976 35789999999886   5


Q ss_pred             CCCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEeeCCCCCccEEEEEEEEEe
Q 040360           89 GNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRNAKGDKNGIINVSVRSL  143 (198)
Q Consensus        89 g~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~~~Gk~~G~I~lsi~~f  143 (198)
                      +     |++||++.|+|.++..+..     ...||+|.. +|+..|+|+|++. |
T Consensus        76 ~-----~~~iG~~~~~l~~~~~~~~-----~~~w~~L~~-~~~~~G~i~l~l~-f  118 (118)
T cd08681          76 K-----PDLIGDTEVDLSPALKEGE-----FDDWYELTL-KGRYAGEVYLELT-F  118 (118)
T ss_pred             C-----CcceEEEEEecHHHhhcCC-----CCCcEEecc-CCcEeeEEEEEEE-C
Confidence            5     8999999999999876532     236899875 5689999999998 5

Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr

>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.91  E-value=2.2e-23  Score=165.07  Aligned_cols=136  Identities=18%  Similarity=0.261  Sum_probs=111.9

Q ss_pred             EEEEEEEEeeCCCCCCCCCcCCcEEEEEECCCCcEEEeeeecCCCCCCeeeeEEEEEecC-CCcEEEEEEEeCCCCCCCC
Q 040360           11 TIELTVLSGEDLRIDRRLIKKNAFAIVQTDTSFDYCTTKVDESGGSHPSWNEKLVIELPM-HARFITVQVQCKSKSSSSG   89 (198)
Q Consensus        11 ~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~~~~~~T~v~~~~g~nP~WNE~f~f~v~~-~~~~L~~eV~~~~~~~~~g   89 (198)
                      .|.|+|++|++|...+.++++||||+|.+++  ++++|++..+++.||+|||+|.|.++. ..+.|.|+|++++.   .+
T Consensus         1 ~L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~--~~~kTk~~~~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~~~---~~   75 (150)
T cd04019           1 YLRVTVIEAQDLVPSDKNRVPEVFVKAQLGN--QVLRTRPSQTRNGNPSWNEELMFVAAEPFEDHLILSVEDRVG---PN   75 (150)
T ss_pred             CEEEEEEEeECCCCCCCCCCCCeEEEEEECC--EEeeeEeccCCCCCCcccCcEEEEecCccCCeEEEEEEEecC---CC
Confidence            3899999999998888889999999999998  888999987756999999999999965 34689999999886   54


Q ss_pred             CCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEeeCCCC--------CccEEEEEEEEEeeeCCccCCCCCCcc
Q 040360           90 NNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRNAKG--------DKNGIINVSVRSLKVAADQHASSSNYL  157 (198)
Q Consensus        90 ~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~~~G--------k~~G~I~lsi~~f~~~~~~~~~~~~~~  157 (198)
                          +|++||++.|||.++..+. ........||+|.+..|        +.+|+|+|.+. |.+..+.-..++-|.
T Consensus        76 ----~dd~lG~v~i~L~~l~~~~-~~~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~-~~~~~~~~~~~~~~~  145 (150)
T cd04019          76 ----KDEPLGRAVIPLNDIERRV-DDRPVPSRWFSLERPGGAMEQKKKRKFASRIHLRLC-LDGGYHVLDESTHYS  145 (150)
T ss_pred             ----CCCeEEEEEEEHHHCcccC-CCCccCCceEECcCCCCcccccccCcccccEEEEEE-ecCcceEeecccccc
Confidence                2899999999999997642 12223467999998654        57899999999 998877666665554

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates

>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I

Probab=99.90  E-value=4.2e-23  Score=157.66  Aligned_cols=117  Identities=24%  Similarity=0.407  Sum_probs=98.1

Q ss_pred             EEEEEEEeeCCCCCCCCCcCCcEEEEEECCCCcEEEeeeecCCCCCCeeeeEEEEEecC------CCcEEEEEEEeCCCC
Q 040360           12 IELTVLSGEDLRIDRRLIKKNAFAIVQTDTSFDYCTTKVDESGGSHPSWNEKLVIELPM------HARFITVQVQCKSKS   85 (198)
Q Consensus        12 LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~~~~~~T~v~~~~g~nP~WNE~f~f~v~~------~~~~L~~eV~~~~~~   85 (198)
                      |+|+|++|++|+..+..+.+||||+|.++.  ++++|++++++ .||+|||+|.|.++.      ....|.|+|||++. 
T Consensus         1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~~--~~~kT~v~~~t-~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~-   76 (126)
T cd08682           1 VQVTVLQARGLLCKGKSGTNDAYVIIQLGK--EKYSTSVKEKT-TSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNL-   76 (126)
T ss_pred             CEEEEEECcCCcCCCCCcCCCceEEEEECC--eeeeeeeecCC-CCCEeCceEEEEecCcccCCCcCCEEEEEEEEccc-
Confidence            579999999998877788999999999987  78899999987 999999999999976      35789999999987 


Q ss_pred             CCCCCCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEeeCCCC---CccEEEEEEEE
Q 040360           86 SSSGNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRNAKG---DKNGIINVSVR  141 (198)
Q Consensus        86 ~~~g~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~~~G---k~~G~I~lsi~  141 (198)
                        +++    |++||++.|+|+++....   +.....||+|....+   +.+|+|+|+++
T Consensus        77 --~~~----d~~iG~~~i~l~~l~~~~---~~~~~~W~~L~~~~~~~~~~~Gei~l~~~  126 (126)
T cd08682          77 --LGL----DKFLGQVSIPLNDLDEDK---GRRRTRWFKLESKPGKDDKERGEIEVDIQ  126 (126)
T ss_pred             --cCC----CceeEEEEEEHHHhhccC---CCcccEEEECcCCCCCCccccceEEEEeC
Confidence              663    899999999999997321   112457999986443   46899999873

Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member

>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.90  E-value=9.8e-23  Score=157.17  Aligned_cols=117  Identities=22%  Similarity=0.310  Sum_probs=96.5

Q ss_pred             EEEEEEEEeeC---CCCCCCCCcCCcEEEEEECCCCcEEEeeeecCCCCCCeeeeEEEEEecCCCcEEEEEEEeCCCCCC
Q 040360           11 TIELTVLSGED---LRIDRRLIKKNAFAIVQTDTSFDYCTTKVDESGGSHPSWNEKLVIELPMHARFITVQVQCKSKSSS   87 (198)
Q Consensus        11 ~LeVtVlsA~~---L~~~~~~~~~dpYvvv~~~~~~~~~~T~v~~~~g~nP~WNE~f~f~v~~~~~~L~~eV~~~~~~~~   87 (198)
                      .|+|+|++|++   |+..+..+.+||||+|++++  ++.+|++++++ .||+|||+|.|.+......|.|+|||++.   
T Consensus         1 ~L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g~--~~~rTk~~~~~-~nP~WnE~f~f~v~~~~~~l~v~V~d~d~---   74 (126)
T cd08379           1 ILEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGP--KWVRTRTVEDS-SNPRWNEQYTWPVYDPCTVLTVGVFDNSQ---   74 (126)
T ss_pred             CeEEEEEEeECCccccccccCCCCCeeEEEEECC--EEeEcCcccCC-CCCcceeEEEEEecCCCCEEEEEEEECCC---
Confidence            38999999999   77778889999999999988  88999999886 99999999999997766799999999876   


Q ss_pred             CC--CCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEeeCCC---CCccEEEEE
Q 040360           88 SG--NNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRNAK---GDKNGIINV  138 (198)
Q Consensus        88 ~g--~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~~~---Gk~~G~I~l  138 (198)
                      .+  ...+.|++||++.|+|+++..+.     ....||+|.+.+   ++..|.|++
T Consensus        75 ~~~~~~~~~dd~lG~~~i~l~~l~~~~-----~~~~~~~L~~~~~~~~~~~g~l~~  125 (126)
T cd08379          75 SHWKEAVQPDVLIGKVRIRLSTLEDDR-----VYAHSYPLLSLNPSGVKKMGELEC  125 (126)
T ss_pred             ccccccCCCCceEEEEEEEHHHccCCC-----EEeeEEEeEeCCCCCccCCcEEEe
Confidence            41  00002999999999999998654     245799999754   457788875

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate

>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.89  E-value=2.5e-22  Score=152.22  Aligned_cols=118  Identities=14%  Similarity=0.224  Sum_probs=102.3

Q ss_pred             EEEEEEEeeCCCCCCCCCcCCcEEEEEECCCCcEEEeeeecCCCCCCeeeeEEEEEecCCCcEEEEEEEeCCCCCCCCCC
Q 040360           12 IELTVLSGEDLRIDRRLIKKNAFAIVQTDTSFDYCTTKVDESGGSHPSWNEKLVIELPMHARFITVQVQCKSKSSSSGNN   91 (198)
Q Consensus        12 LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~~~~~~T~v~~~~g~nP~WNE~f~f~v~~~~~~L~~eV~~~~~~~~~g~~   91 (198)
                      |.|+|++|++|...+..+..||||++.+++ ...++|++.+++ .||+|||+|.|.+......|.|+|||++.   .++ 
T Consensus         2 L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~-~~~~kT~~~~~t-~nP~Wne~f~f~v~~~~~~l~~~v~D~d~---~~~-   75 (121)
T cd04042           2 LDIHLKEGRNLAARDRGGTSDPYVKFKYGG-KTVYKSKTIYKN-LNPVWDEKFTLPIEDVTQPLYIKVFDYDR---GLT-   75 (121)
T ss_pred             eEEEEEEeeCCCCcCCCCCCCCeEEEEECC-EEEEEeeeccCC-CCCccceeEEEEecCCCCeEEEEEEeCCC---CCC-
Confidence            899999999998777788999999999987 567899998876 99999999999997656799999999987   653 


Q ss_pred             CCCCceeEEEEEeCccccCCCCCCCceEeEEEEeeCCCC-CccEEEEEEEEEee
Q 040360           92 NNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRNAKG-DKNGIINVSVRSLK  144 (198)
Q Consensus        92 ~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~~~G-k~~G~I~lsi~~f~  144 (198)
                         |++||.+.++|.++..+..     ...+|+|.+..+ +..|+|+|.++ |.
T Consensus        76 ---~~~iG~~~~~l~~l~~~~~-----~~~~~~L~~~~~~~~~G~l~l~~~-~~  120 (121)
T cd04042          76 ---DDFMGSAFVDLSTLELNKP-----TEVKLKLEDPNSDEDLGYISLVVT-LT  120 (121)
T ss_pred             ---CcceEEEEEEHHHcCCCCC-----eEEEEECCCCCCccCceEEEEEEE-EC
Confidence               8999999999999986532     357999987665 68999999999 75

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein

>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.89  E-value=3.9e-22  Score=152.48  Aligned_cols=120  Identities=22%  Similarity=0.302  Sum_probs=99.1

Q ss_pred             EEEEEEEEeeCCCCCCCCCcCCcEEEEEECCCCcEEEeeeecCCCCCCeeeeEEEEEecCC----CcEEEEEEEeCCCCC
Q 040360           11 TIELTVLSGEDLRIDRRLIKKNAFAIVQTDTSFDYCTTKVDESGGSHPSWNEKLVIELPMH----ARFITVQVQCKSKSS   86 (198)
Q Consensus        11 ~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~~~~~~T~v~~~~g~nP~WNE~f~f~v~~~----~~~L~~eV~~~~~~~   86 (198)
                      +|.|+|++|++|...+..+.+||||+|.+++  ++++|++.+++ .||.|||+|.|.+...    ...|.|+|||++.  
T Consensus         1 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~--~~~rT~v~~~t-~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~--   75 (127)
T cd04022           1 KLVVEVVDAQDLMPKDGQGSSSAYVELDFDG--QKKRTRTKPKD-LNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRR--   75 (127)
T ss_pred             CeEEEEEEeeCCCCCCCCCCcCcEEEEEECC--EEecceeEcCC-CCCccceEEEEEccCHHHccCCeEEEEEeeCCC--
Confidence            4899999999998777778899999999998  78899999876 9999999999999753    2579999999876  


Q ss_pred             CCCCCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEeeCC--CCCccEEEEEEEEEee
Q 040360           87 SSGNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRNA--KGDKNGIINVSVRSLK  144 (198)
Q Consensus        87 ~~g~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~~--~Gk~~G~I~lsi~~f~  144 (198)
                       ++.   ++++||++.|+|+++...    +.....||+|.++  .++.+|+|+|++. |.
T Consensus        76 -~~~---~d~~lG~v~i~l~~l~~~----~~~~~~w~~L~~~~~~~~~~G~l~l~~~-~~  126 (127)
T cd04022          76 -SGR---RRSFLGRVRISGTSFVPP----SEAVVQRYPLEKRGLFSRVRGEIGLKVY-IT  126 (127)
T ss_pred             -CcC---CCCeeeEEEEcHHHcCCC----CCccceEeEeeeCCCCCCccEEEEEEEE-Ec
Confidence             420   189999999999999732    1224579999875  3468999999998 75

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates

>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD)

Probab=99.89  E-value=6.3e-22  Score=157.79  Aligned_cols=120  Identities=23%  Similarity=0.342  Sum_probs=101.3

Q ss_pred             ceEEEEEEEEeeCCCCCC------------------------------CCCcCCcEEEEEECCCCcEEEeeeecCCCCCC
Q 040360            9 YRTIELTVLSGEDLRIDR------------------------------RLIKKNAFAIVQTDTSFDYCTTKVDESGGSHP   58 (198)
Q Consensus         9 ~~~LeVtVlsA~~L~~~~------------------------------~~~~~dpYvvv~~~~~~~~~~T~v~~~~g~nP   58 (198)
                      .|+|+|+|++|++|+..+                              ..++.||||+|++++ .+..+|++++++ .||
T Consensus         6 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~-~~~~rT~v~~~~-~nP   83 (158)
T cd04015           6 HGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAG-ARVARTRVIENS-ENP   83 (158)
T ss_pred             eeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECC-eEeeEEEEeCCC-CCC
Confidence            489999999999997644                              346689999999997 445699999886 999


Q ss_pred             eeeeEEEEEecCCCcEEEEEEEeCCCCCCCCCCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEeeCCCCC---ccEE
Q 040360           59 SWNEKLVIELPMHARFITVQVQCKSKSSSSGNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRNAKGD---KNGI  135 (198)
Q Consensus        59 ~WNE~f~f~v~~~~~~L~~eV~~~~~~~~~g~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~~~Gk---~~G~  135 (198)
                      +|||+|.|.+....+.|.|+|+|++.   ++     +++||.+.|||+++..+..     ...||+|.+..|+   ..|.
T Consensus        84 ~WnE~F~~~~~~~~~~l~~~V~d~d~---~~-----~~~IG~~~i~l~~l~~g~~-----~~~w~~L~~~~~~~~~~~~~  150 (158)
T cd04015          84 VWNESFHIYCAHYASHVEFTVKDNDV---VG-----AQLIGRAYIPVEDLLSGEP-----VEGWLPILDSNGKPPKPGAK  150 (158)
T ss_pred             ccceEEEEEccCCCCEEEEEEEeCCC---cC-----CcEEEEEEEEhHHccCCCC-----cceEEECcCCCCCCCCCCCE
Confidence            99999999998767789999999887   67     7899999999999987542     3479999987665   4679


Q ss_pred             EEEEEEEee
Q 040360          136 INVSVRSLK  144 (198)
Q Consensus       136 I~lsi~~f~  144 (198)
                      |+|+++ |.
T Consensus       151 l~v~~~-f~  158 (158)
T cd04015         151 IRVSLQ-FT  158 (158)
T ss_pred             EEEEEE-EC
Confidence            999999 73

PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic

>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.89  E-value=4.1e-22  Score=152.05  Aligned_cols=117  Identities=21%  Similarity=0.288  Sum_probs=99.4

Q ss_pred             EEEEEEEeeCCCCCCCCCcCCcEEEEEECCCCcEEEeeeecCCCCCCeeeeEEEEEecC-CCcEEEEEEEeCCCCCCCCC
Q 040360           12 IELTVLSGEDLRIDRRLIKKNAFAIVQTDTSFDYCTTKVDESGGSHPSWNEKLVIELPM-HARFITVQVQCKSKSSSSGN   90 (198)
Q Consensus        12 LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~~~~~~T~v~~~~g~nP~WNE~f~f~v~~-~~~~L~~eV~~~~~~~~~g~   90 (198)
                      |.|+|++|++|+..    ..||||+|.++.  .+.+|++.+++ .||+|||+|.|.+.. ....|.|+|+|++.   .+ 
T Consensus         2 L~V~Vi~a~~L~~~----~~Dpyv~v~l~~--~~~kT~v~~~t-~nP~Wne~F~f~~~~~~~~~L~~~v~d~d~---~~-   70 (121)
T cd08378           2 LYVRVVKARGLPAN----SNDPVVEVKLGN--YKGSTKAIERT-SNPEWNQVFAFSKDRLQGSTLEVSVWDKDK---AK-   70 (121)
T ss_pred             EEEEEEEecCCCcc----cCCCEEEEEECC--ccccccccCCC-CCCccceEEEEEcCCCcCCEEEEEEEeCCC---Cc-
Confidence            78999999999754    689999999987  78899999886 899999999999865 56789999999987   55 


Q ss_pred             CCCCCceeEEEEEeCccccCCCCCCCceEeEEEEeeCCCC-CccEEEEEEEEEee
Q 040360           91 NNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRNAKG-DKNGIINVSVRSLK  144 (198)
Q Consensus        91 ~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~~~G-k~~G~I~lsi~~f~  144 (198)
                          +++||.+.|+|+++.....++......||.|.+..+ +.+|+|+|+++ |.
T Consensus        71 ----~~~lG~~~i~l~~l~~~~~~~~~~~~~W~~L~~~~~~~~~G~i~l~~~-~~  120 (121)
T cd08378          71 ----DDFLGGVCFDLSEVPTRVPPDSPLAPQWYRLEDKKGGRVGGELMLAVW-FG  120 (121)
T ss_pred             ----CceeeeEEEEhHhCcCCCCCCCCCCcceEEccCCCCCccceEEEEEEE-ec
Confidence                899999999999997654333334567999988654 78999999999 85

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate

>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42)

Probab=99.89  E-value=6.6e-22  Score=151.74  Aligned_cols=124  Identities=17%  Similarity=0.296  Sum_probs=102.5

Q ss_pred             EEEEEEEEeeCCCCCCCCCcCCcEEEEEECCC-----CcEEEeeeecCCCCCCeeeeEEEEEecCCCcEEEEEEEeCCCC
Q 040360           11 TIELTVLSGEDLRIDRRLIKKNAFAIVQTDTS-----FDYCTTKVDESGGSHPSWNEKLVIELPMHARFITVQVQCKSKS   85 (198)
Q Consensus        11 ~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~-----~~~~~T~v~~~~g~nP~WNE~f~f~v~~~~~~L~~eV~~~~~~   85 (198)
                      +|.|+|++|++|...+..+..||||+|.+.+.     ..+++|++.+++ .||.|||+|.|.+......|.|+|+|++. 
T Consensus         1 ~L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t-~nP~Wne~f~f~~~~~~~~l~~~v~d~~~-   78 (133)
T cd04033           1 ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKT-LNPKWNEEFFFRVNPREHRLLFEVFDENR-   78 (133)
T ss_pred             CEEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCC-CCCcEeeEEEEEEcCCCCEEEEEEEECCC-
Confidence            48999999999987777789999999999862     125789998876 99999999999997766789999999987 


Q ss_pred             CCCCCCCCCCceeEEEEEeCccccCCCCCC-CceEeEEEEeeCC--CCCccEEEEEEEEEe
Q 040360           86 SSSGNNNNHNKIVGFARIPVSDFIGGYAPE-NYLHFLSYRLRNA--KGDKNGIINVSVRSL  143 (198)
Q Consensus        86 ~~~g~~~~~d~~IG~a~IpL~~l~~~~~~~-~~~~~~sy~L~~~--~Gk~~G~I~lsi~~f  143 (198)
                        ++    ++++||.+.|++.++..+...+ ......||+|...  .++..|+|+|++. |
T Consensus        79 --~~----~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~G~l~~~~~-~  132 (133)
T cd04033          79 --LT----RDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPRSSKSRVKGHLRLYMA-Y  132 (133)
T ss_pred             --CC----CCCeeEEEEEEHHHCCCcCccccccccchheeeeecCCCCcceeEEEEEEe-e
Confidence              66    3899999999999998764221 2235679999864  4678999999998 6

Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd08375 C2_Intersectin C2 domain present in Intersectin

Probab=99.89  E-value=1e-21  Score=152.97  Aligned_cols=127  Identities=17%  Similarity=0.216  Sum_probs=103.8

Q ss_pred             CCCCCcceEEEEEEEEeeCCCCCCCCCcCCcEEEEEECCCCcEEEeeeecCCCCCCeeeeEEEEEecC-CCcEEEEEEEe
Q 040360            3 EKSSSGYRTIELTVLSGEDLRIDRRLIKKNAFAIVQTDTSFDYCTTKVDESGGSHPSWNEKLVIELPM-HARFITVQVQC   81 (198)
Q Consensus         3 ~~~~m~~~~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~~~~~~T~v~~~~g~nP~WNE~f~f~v~~-~~~~L~~eV~~   81 (198)
                      ++++...|.|.|+|++|++|+..+..+.+||||++.++.  +.++|++++++ .||.|||+|.|.+.. ....|.|+|||
T Consensus         8 ~~~~~~~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~~--~~~kT~vi~~t-~nP~Wne~f~f~v~~~~~~~l~i~V~D   84 (136)
T cd08375           8 SQRASGIGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMGS--QEHKTKVVSDT-LNPKWNSSMQFFVKDLEQDVLCITVFD   84 (136)
T ss_pred             ccCCCCcEEEEEEEEEeeCCCCCCCCCCcCcEEEEEECC--EeeeccccCCC-CCCccCceEEEEecCccCCEEEEEEEE
Confidence            466778899999999999998877788999999999987  78999999986 999999999999965 34689999999


Q ss_pred             CCCCCCCCCCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEeeCCCCCccEEEEEEEEEe
Q 040360           82 KSKSSSSGNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRNAKGDKNGIINVSVRSL  143 (198)
Q Consensus        82 ~~~~~~~g~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~~~Gk~~G~I~lsi~~f  143 (198)
                      ++.   +++    |++||.+.|+|.++..........-..+..|   +++.+|+|+|++. |
T Consensus        85 ~d~---~~~----d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~---~~~~~g~i~l~~~-~  135 (136)
T cd08375          85 RDF---FSP----DDFLGRTEIRVADILKETKESKGPITKRLLL---HEVPTGEVVVKLD-L  135 (136)
T ss_pred             CCC---CCC----CCeeEEEEEEHHHhccccccCCCcEEEEecc---ccccceeEEEEEE-e
Confidence            987   663    8999999999999987432222122233333   4778999999998 6

A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro

>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein

Probab=99.88  E-value=2.2e-21  Score=148.33  Aligned_cols=121  Identities=17%  Similarity=0.295  Sum_probs=100.9

Q ss_pred             EEEEEEEeeCCCCCCCCCcCCcEEEEEECCCCcEEEeeeecCCCCCCeeeeEEEEEecCCCcEEEEEEEeCCCCCCCCCC
Q 040360           12 IELTVLSGEDLRIDRRLIKKNAFAIVQTDTSFDYCTTKVDESGGSHPSWNEKLVIELPMHARFITVQVQCKSKSSSSGNN   91 (198)
Q Consensus        12 LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~~~~~~T~v~~~~g~nP~WNE~f~f~v~~~~~~L~~eV~~~~~~~~~g~~   91 (198)
                      |.|+|++|++|..  ..++.||||++.++...++++|++.+++ .||+|||.|.|.+......|.|+|||++.   .+  
T Consensus         1 l~v~v~~A~~L~~--~~g~~dpyv~v~~~~~~~~~kT~v~~~t-~nP~Wne~f~f~~~~~~~~l~~~v~d~~~---~~--   72 (126)
T cd08678           1 LLVKNIKANGLSE--AAGSSNPYCVLEMDEPPQKYQSSTQKNT-SNPFWDEHFLFELSPNSKELLFEVYDNGK---KS--   72 (126)
T ss_pred             CEEEEEEecCCCC--CCCCcCCEEEEEECCCCcEEEeEEEecC-CCCccCceEEEEeCCCCCEEEEEEEECCC---CC--
Confidence            6799999999986  6689999999999742367899999986 99999999999997666789999999987   55  


Q ss_pred             CCCCceeEEEEEeCccccCCCCCCCceEeEEEEeeCC---CCCccEEEEEEEEEeeeCCc
Q 040360           92 NNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRNA---KGDKNGIINVSVRSLKVAAD  148 (198)
Q Consensus        92 ~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~~---~Gk~~G~I~lsi~~f~~~~~  148 (198)
                        +|++||.+.|+|.++..+..     ...+|.|...   +++..|+|++.+. |.++++
T Consensus        73 --~~~~lG~~~i~l~~l~~~~~-----~~~~~~L~~~~~~~~~~~G~l~l~~~-~~~~~~  124 (126)
T cd08678          73 --DSKFLGLAIVPFDELRKNPS-----GRQIFPLQGRPYEGDSVSGSITVEFL-FMEPAE  124 (126)
T ss_pred             --CCceEEEEEEeHHHhccCCc-----eeEEEEecCCCCCCCCcceEEEEEEE-Eecccc
Confidence              39999999999999987642     2358888764   2457999999999 876553

The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a

>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins

Probab=99.88  E-value=1.7e-21  Score=147.04  Aligned_cols=121  Identities=19%  Similarity=0.249  Sum_probs=98.9

Q ss_pred             eEEEEEEEEeeCCCCCC-CCCcCCcEEEEEECCCCcEEEeeeecCCCCCCeeeeEEEEEecCCCcEEEEEEEeCCCCCCC
Q 040360           10 RTIELTVLSGEDLRIDR-RLIKKNAFAIVQTDTSFDYCTTKVDESGGSHPSWNEKLVIELPMHARFITVQVQCKSKSSSS   88 (198)
Q Consensus        10 ~~LeVtVlsA~~L~~~~-~~~~~dpYvvv~~~~~~~~~~T~v~~~~g~nP~WNE~f~f~v~~~~~~L~~eV~~~~~~~~~   88 (198)
                      |.|+|+|++|++|+..+ ..+..||||+|+++.....++|++++++ .||.|||.|.|.+....+.|.|+|||++.   .
T Consensus         2 g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~~~~~kT~~~~~~-~~P~Wne~~~~~v~~~~~~l~~~v~d~~~---~   77 (124)
T cd04044           2 GVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRELARTKVKKDT-SNPVWNETKYILVNSLTEPLNLTVYDFND---K   77 (124)
T ss_pred             eEEEEEEEcccCCCcccccCCCCCCeEEEEECCCCcceEeeeecCC-CCCcceEEEEEEeCCCCCEEEEEEEecCC---C
Confidence            78999999999998544 3456899999999862267899999875 99999999999998667899999999987   5


Q ss_pred             CCCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEeeCCCCCccEEEEEEEEEee
Q 040360           89 GNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRNAKGDKNGIINVSVRSLK  144 (198)
Q Consensus        89 g~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~~~Gk~~G~I~lsi~~f~  144 (198)
                      +    .|++||++.++|.++..+...    ...++.|. .+|+.+|+|+|+++ |.
T Consensus        78 ~----~d~~iG~~~~~l~~l~~~~~~----~~~~~~~~-~~~k~~G~i~~~l~-~~  123 (124)
T cd04044          78 R----KDKLIGTAEFDLSSLLQNPEQ----ENLTKNLL-RNGKPVGELNYDLR-FF  123 (124)
T ss_pred             C----CCceeEEEEEEHHHhccCccc----cCcchhhh-cCCccceEEEEEEE-eC
Confidence            5    289999999999999876422    12344454 57889999999999 75

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.87  E-value=4e-21  Score=144.44  Aligned_cols=116  Identities=17%  Similarity=0.238  Sum_probs=100.1

Q ss_pred             eEEEEEEEEeeCCCCCCCCCcCCcEEEEEECCCCcEEEeeeecCCCCCCeeeeEEEEEecCCCcEEEEEEEeCCCCCCCC
Q 040360           10 RTIELTVLSGEDLRIDRRLIKKNAFAIVQTDTSFDYCTTKVDESGGSHPSWNEKLVIELPMHARFITVQVQCKSKSSSSG   89 (198)
Q Consensus        10 ~~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~~~~~~T~v~~~~g~nP~WNE~f~f~v~~~~~~L~~eV~~~~~~~~~g   89 (198)
                      |.|+|+|++|++|+..+..+.+||||+|.++.  ..++|++.+++ .||.|||+|.|.+......|.|+|||++.   .+
T Consensus         1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~--~~~~T~~~~~t-~nP~W~e~f~~~~~~~~~~l~~~v~d~~~---~~   74 (119)
T cd08377           1 GFLQVKVIRASGLAAADIGGKSDPFCVLELVN--ARLQTHTIYKT-LNPEWNKIFTFPIKDIHDVLEVTVYDEDK---DK   74 (119)
T ss_pred             CEEEEEEEeeeCCCCCCCCCCCCcEEEEEECC--EeeecceecCC-cCCccCcEEEEEecCcCCEEEEEEEECCC---CC
Confidence            57999999999998777778899999999987  67899999886 99999999999997656899999999886   55


Q ss_pred             CCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEeeCCC--CCccEEEEEEEEEe
Q 040360           90 NNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRNAK--GDKNGIINVSVRSL  143 (198)
Q Consensus        90 ~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~~~--Gk~~G~I~lsi~~f  143 (198)
                      +    +++||++.++|.++..+.       ..||.|.+..  ++.+|+|.|++. |
T Consensus        75 ~----~~~iG~~~~~l~~~~~~~-------~~~~~l~~~~~~~~~~G~i~l~~~-~  118 (119)
T cd08377          75 K----PEFLGKVAIPLLSIKNGE-------RKWYALKDKKLRTRAKGSILLEMD-V  118 (119)
T ss_pred             C----CceeeEEEEEHHHCCCCC-------ceEEECcccCCCCceeeEEEEEEE-e
Confidence            3    899999999999997542       2599998754  458999999998 6

MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran

>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3

Probab=99.87  E-value=5.9e-21  Score=145.61  Aligned_cols=117  Identities=17%  Similarity=0.275  Sum_probs=98.2

Q ss_pred             EEEEEEEeeCCCCC-CCCCcCCcEEEEEECCCCcEEEeeeecCCCCCCeeeeEEEEEecCCCcEEEEEEEeCCCCCCCCC
Q 040360           12 IELTVLSGEDLRID-RRLIKKNAFAIVQTDTSFDYCTTKVDESGGSHPSWNEKLVIELPMHARFITVQVQCKSKSSSSGN   90 (198)
Q Consensus        12 LeVtVlsA~~L~~~-~~~~~~dpYvvv~~~~~~~~~~T~v~~~~g~nP~WNE~f~f~v~~~~~~L~~eV~~~~~~~~~g~   90 (198)
                      |.|+|++|++|+.. ...+..||||.|.++. ...++|++.+++ .||.|||.|.|.++.....|.|+|||++.   ++ 
T Consensus         2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~~-~~~~kT~v~~kt-~~P~WnE~F~f~v~~~~~~l~~~v~d~~~---~~-   75 (121)
T cd08401           2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLDQ-EEVFRTKTVEKS-LCPFFGEDFYFEIPRTFRHLSFYIYDRDV---LR-   75 (121)
T ss_pred             eEEEEEEccCCCCCCCCCCCcCcEEEEEECC-ccEEEeeEEECC-CCCccCCeEEEEcCCCCCEEEEEEEECCC---CC-
Confidence            78999999999864 3346789999999987 456899999886 99999999999998766899999999987   55 


Q ss_pred             CCCCCceeEEEEEeCccccCCCCCCCceEeEEEEeeC--CCCCccEEEEEEEEEe
Q 040360           91 NNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRN--AKGDKNGIINVSVRSL  143 (198)
Q Consensus        91 ~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~--~~Gk~~G~I~lsi~~f  143 (198)
                         +|++||.+.|+|+++..+..     ...||.|..  ..++..|+|||+++ |
T Consensus        76 ---~~~~iG~~~i~l~~l~~~~~-----~~~w~~L~~~~~~~~~~G~i~l~~~-~  121 (121)
T cd08401          76 ---RDSVIGKVAIKKEDLHKYYG-----KDTWFPLQPVDADSEVQGKVHLELR-L  121 (121)
T ss_pred             ---CCceEEEEEEEHHHccCCCC-----cEeeEEEEccCCCCcccEEEEEEEE-C
Confidence               38999999999999976432     357999985  34567999999998 5

RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p

>cd04046 C2_Calpain C2 domain present in Calpain proteins

Probab=99.86  E-value=1.3e-20  Score=144.26  Aligned_cols=117  Identities=17%  Similarity=0.200  Sum_probs=98.8

Q ss_pred             eEEEEEEEEeeCCCCCCCCCcCCcEEEEEECCCCcEEEeeeecCCCCCCeeeeEEEEEecCCCcEEEEEEEeCCCCCCCC
Q 040360           10 RTIELTVLSGEDLRIDRRLIKKNAFAIVQTDTSFDYCTTKVDESGGSHPSWNEKLVIELPMHARFITVQVQCKSKSSSSG   89 (198)
Q Consensus        10 ~~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~~~~~~T~v~~~~g~nP~WNE~f~f~v~~~~~~L~~eV~~~~~~~~~g   89 (198)
                      ..|+|+|++|++|+..+.++..||||++.+++  ++++|++.+++ .||+|||.|.|.+......|.|+|||++.   .+
T Consensus         3 ~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~~--~~~kT~v~~~t-~nP~Wne~f~f~~~~~~~~l~i~V~d~~~---~~   76 (126)
T cd04046           3 VVTQVHVHSAEGLSKQDSGGGADPYVIIKCEG--ESVRSPVQKDT-LSPEFDTQAIFYRKKPRSPIKIQVWNSNL---LC   76 (126)
T ss_pred             EEEEEEEEeCcCCCCCCCCCCcCccEEEEECC--EEEEeCccCCC-CCCcccceEEEEecCCCCEEEEEEEECCC---CC
Confidence            57999999999998777788999999999988  78999999876 99999999999987767899999999887   66


Q ss_pred             CCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEee----CCCCCccEEEEEEEEEeee
Q 040360           90 NNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLR----NAKGDKNGIINVSVRSLKV  145 (198)
Q Consensus        90 ~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~----~~~Gk~~G~I~lsi~~f~~  145 (198)
                           |++||.+.+++.++....       ..+|+|.    ..+++..|.|.|.+. +.+
T Consensus        77 -----d~~lG~~~~~l~~~~~~~-------~~~~~l~~~~~~~~~~~~G~i~~~~~-~~~  123 (126)
T cd04046          77 -----DEFLGQATLSADPNDSQT-------LRTLPLRKRGRDAAGEVPGTISVKVT-SSD  123 (126)
T ss_pred             -----CCceEEEEEecccCCCcC-------ceEEEcccCCCCCCCCCCCEEEEEEE-Ecc
Confidence                 899999999999864321       1345553    356889999999998 654

A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic

>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1)

Probab=99.86  E-value=1.5e-20  Score=144.06  Aligned_cols=118  Identities=20%  Similarity=0.367  Sum_probs=95.2

Q ss_pred             eEEEEEEEEeeCCCCCCCCCcCCcEEEEEECCCCcEEEeeeecCCCCCCeeeeEEEEEecCC-CcEEEEEEEeCCCCCCC
Q 040360           10 RTIELTVLSGEDLRIDRRLIKKNAFAIVQTDTSFDYCTTKVDESGGSHPSWNEKLVIELPMH-ARFITVQVQCKSKSSSS   88 (198)
Q Consensus        10 ~~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~~~~~~T~v~~~~g~nP~WNE~f~f~v~~~-~~~L~~eV~~~~~~~~~   88 (198)
                      +.|+|+|++|+||+..   +..||||+|.+++ .+..+|++. + +.||.|||+|.|.+... ...|+|+|+|++.   .
T Consensus         4 ~~L~V~Vi~A~~L~~~---~~~DPYv~v~l~~-~~~~kT~v~-~-~~nP~WnE~f~f~~~~~~~~~l~v~v~d~~~---~   74 (126)
T cd08400           4 RSLQLNVLEAHKLPVK---HVPHPYCVISLNE-VKVARTKVR-E-GPNPVWSEEFVFDDLPPDVNSFTISLSNKAK---R   74 (126)
T ss_pred             eEEEEEEEEeeCCCCC---CCCCeeEEEEECC-EeEEEeecC-C-CCCCccCCEEEEecCCCCcCEEEEEEEECCC---C
Confidence            5799999999999853   3689999999987 455789874 4 48999999999986443 3579999999887   5


Q ss_pred             CCCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEeeCCC---CCccEEEEEEEEEeeeC
Q 040360           89 GNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRNAK---GDKNGIINVSVRSLKVA  146 (198)
Q Consensus        89 g~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~~~---Gk~~G~I~lsi~~f~~~  146 (198)
                      +    +|++||++.|||.++..+..     ...||.|...+   .+..|+|+|+++ |.++
T Consensus        75 ~----~d~~iG~v~i~l~~l~~~~~-----~~~W~~L~~~~~~~~~~~G~i~l~l~-~~~~  125 (126)
T cd08400          75 S----KDSEIAEVTVQLSKLQNGQE-----TDEWYPLSSASPLKGGEWGSLRIRAR-YSHE  125 (126)
T ss_pred             C----CCCeEEEEEEEHhHccCCCc-----ccEeEEcccCCCCCCCcCcEEEEEEE-EEcc
Confidence            5    39999999999999987542     34699998754   346799999999 8753

RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki

>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4

Probab=99.86  E-value=1.2e-20  Score=143.22  Aligned_cols=116  Identities=22%  Similarity=0.233  Sum_probs=97.7

Q ss_pred             EEEEEEEEeeCCCCCCCCCcCCcEEEEEECCCCcEEEeeeecCCCCCCeeeeEEEEEecCC-CcEEEEEEEeCCCCCCCC
Q 040360           11 TIELTVLSGEDLRIDRRLIKKNAFAIVQTDTSFDYCTTKVDESGGSHPSWNEKLVIELPMH-ARFITVQVQCKSKSSSSG   89 (198)
Q Consensus        11 ~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~~~~~~T~v~~~~g~nP~WNE~f~f~v~~~-~~~L~~eV~~~~~~~~~g   89 (198)
                      .|.|+|++|++|...+..+..||||+|.++.  .+++|++.+++ .||.|||+|.|.+... ...|.|+|+|++.   .+
T Consensus         1 ~L~v~vi~a~~L~~~d~~~~~DPyv~v~~~~--~~~kT~v~~~t-~nP~Wne~f~f~~~~~~~~~l~~~v~d~~~---~~   74 (123)
T cd04025           1 RLRCHVLEARDLAPKDRNGTSDPFVRVFYNG--QTLETSVVKKS-CYPRWNEVFEFELMEGADSPLSVEVWDWDL---VS   74 (123)
T ss_pred             CEEEEEEEeeCCCCCCCCCCcCceEEEEECC--EEEeceeecCC-CCCccCcEEEEEcCCCCCCEEEEEEEECCC---CC
Confidence            3899999999998777777899999999987  78899999886 8999999999999764 4689999999887   66


Q ss_pred             CCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEeeC------CCCCccEEEEEEEE
Q 040360           90 NNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRN------AKGDKNGIINVSVR  141 (198)
Q Consensus        90 ~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~------~~Gk~~G~I~lsi~  141 (198)
                      +    +++||.+.++|.++..+..     ...||.|..      .+++..|.|+|.|+
T Consensus        75 ~----~~~iG~~~~~l~~l~~~~~-----~~~w~~L~~~~~~~~~~~~~~G~l~~~~~  123 (123)
T cd04025          75 K----NDFLGKVVFSIQTLQQAKQ-----EEGWFRLLPDPRAEEESGGNLGSLRLKVR  123 (123)
T ss_pred             C----CcEeEEEEEEHHHcccCCC-----CCCEEECCCCCCCCccccCceEEEEEEeC
Confidence            3    8999999999999976532     235999886      35678899999874

RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a

>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4

Probab=99.86  E-value=1.6e-20  Score=142.78  Aligned_cols=117  Identities=14%  Similarity=0.181  Sum_probs=98.3

Q ss_pred             EEEEEEEeeCCCCCCCCCcCCcEEEEEECCCCcEEEeeeecCCCCCCeeeeEEEEEecCCCcEEEEEEEeCCCCCCCCCC
Q 040360           12 IELTVLSGEDLRIDRRLIKKNAFAIVQTDTSFDYCTTKVDESGGSHPSWNEKLVIELPMHARFITVQVQCKSKSSSSGNN   91 (198)
Q Consensus        12 LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~~~~~~T~v~~~~g~nP~WNE~f~f~v~~~~~~L~~eV~~~~~~~~~g~~   91 (198)
                      |.|+|++|++|...+..++.||||+|.+++ ....+|++++++ .||.|||.|.|.++...+.|.|+|||++.   .+  
T Consensus         2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~~-~~~~kT~v~~~t-~nP~Wne~f~~~~~~~~~~l~v~v~d~~~---~~--   74 (121)
T cd04054           2 LYIRIVEGKNLPAKDITGSSDPYCIVKVDN-EVIIRTATVWKT-LNPFWGEEYTVHLPPGFHTVSFYVLDEDT---LS--   74 (121)
T ss_pred             EEEEEEEeeCCcCCCCCCCCCceEEEEECC-EeeeeeeeEcCC-CCCcccceEEEeeCCCCCEEEEEEEECCC---CC--
Confidence            899999999998878788999999999987 345799999886 99999999999998766899999999987   66  


Q ss_pred             CCCCceeEEEEEeCccccCCCCCCCceEeEEEEeeC--CCCCccEEEEEEEE
Q 040360           92 NNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRN--AKGDKNGIINVSVR  141 (198)
Q Consensus        92 ~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~--~~Gk~~G~I~lsi~  141 (198)
                        +|++||++.+++.++..+..  .  ...||.|+.  ..++..|+|+|.++
T Consensus        75 --~d~~iG~~~~~~~~~~~~~~--~--~~~W~~L~~~~~~~~~~G~i~l~~~  120 (121)
T cd04054          75 --RDDVIGKVSLTREVISAHPR--G--IDGWMNLTEVDPDEEVQGEIHLELS  120 (121)
T ss_pred             --CCCEEEEEEEcHHHhccCCC--C--CCcEEECeeeCCCCccccEEEEEEE
Confidence              38999999999998875321  1  236999865  45567999999886

Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.

>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon

Probab=99.86  E-value=2.1e-20  Score=143.81  Aligned_cols=120  Identities=19%  Similarity=0.232  Sum_probs=98.2

Q ss_pred             CcceEEEEEEEEeeCCCCCCC----------CCcCCcEEEEEECCCCcEEEeeeecCCCCCCeeeeEEEEEecCCCcEEE
Q 040360            7 SGYRTIELTVLSGEDLRIDRR----------LIKKNAFAIVQTDTSFDYCTTKVDESGGSHPSWNEKLVIELPMHARFIT   76 (198)
Q Consensus         7 m~~~~LeVtVlsA~~L~~~~~----------~~~~dpYvvv~~~~~~~~~~T~v~~~~g~nP~WNE~f~f~v~~~~~~L~   76 (198)
                      |+.+.|+|+|++|++|+..+.          .+..||||+|.+++ ....+|++.+++ .||.|||+|.|.+.. .+.|.
T Consensus         1 ~~~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~-~~~~kT~~~~~t-~~P~Wne~f~~~v~~-~~~l~   77 (132)
T cd04014           1 MFTGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDD-THIGKTSTKPKT-NSPVWNEEFTTEVHN-GRNLE   77 (132)
T ss_pred             CcceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECC-EEEeEEeEcCCC-CCCCcceeEEEEcCC-CCEEE
Confidence            778999999999999986554          25789999999987 445699998875 999999999999974 57899


Q ss_pred             EEEEeCCCCCCCCCCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEeeCCCCCccEEEEEEEEEeee
Q 040360           77 VQVQCKSKSSSSGNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRNAKGDKNGIINVSVRSLKV  145 (198)
Q Consensus        77 ~eV~~~~~~~~~g~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~~~Gk~~G~I~lsi~~f~~  145 (198)
                      |+|++++.   .+    ++++||.+.|+|.++..+.   ......||.|.     +.|.|+|.+. ++.
T Consensus        78 ~~v~d~~~---~~----~~~~iG~~~i~l~~l~~~~---~~~~~~w~~L~-----~~G~l~l~~~-~~~  130 (132)
T cd04014          78 LTVFHDAA---IG----PDDFVANCTISFEDLIQRG---SGSFDLWVDLE-----PQGKLHVKIE-LKG  130 (132)
T ss_pred             EEEEeCCC---CC----CCceEEEEEEEhHHhcccC---CCcccEEEEcc-----CCcEEEEEEE-Eec
Confidence            99999876   55    3899999999999998741   11235799985     6799999999 764

A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that

>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins

Probab=99.85  E-value=1.7e-20  Score=142.47  Aligned_cols=120  Identities=14%  Similarity=0.191  Sum_probs=99.6

Q ss_pred             eEEEEEEEEeeCCCCCCC--CCcCCcEEEEEECCCCcEEEeeeecCCCCCCeeeeEEEEEecC-CCcEEEEEEEeCCCCC
Q 040360           10 RTIELTVLSGEDLRIDRR--LIKKNAFAIVQTDTSFDYCTTKVDESGGSHPSWNEKLVIELPM-HARFITVQVQCKSKSS   86 (198)
Q Consensus        10 ~~LeVtVlsA~~L~~~~~--~~~~dpYvvv~~~~~~~~~~T~v~~~~g~nP~WNE~f~f~v~~-~~~~L~~eV~~~~~~~   86 (198)
                      |.|.|+|++|++|...+.  .+..||||+|.++.  ++++|++++++ .||.|||.|.|.+.. ....|.|+|||++.  
T Consensus         1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~~--~~~kT~~~~~t-~~P~Wne~f~~~~~~~~~~~l~i~v~d~~~--   75 (128)
T cd04024           1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVGA--QRFKTQTIPNT-LNPKWNYWCEFPIFSAQNQLLKLILWDKDR--   75 (128)
T ss_pred             CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEECC--EEEecceecCC-cCCccCCcEEEEecCCCCCEEEEEEEECCC--
Confidence            579999999999987666  78899999999987  78899999886 999999999999976 46799999999887  


Q ss_pred             CCCCCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEeeCCC----CCccEEEEEEEE
Q 040360           87 SSGNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRNAK----GDKNGIINVSVR  141 (198)
Q Consensus        87 ~~g~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~~~----Gk~~G~I~lsi~  141 (198)
                       .++    +++||.+.|+|.++....  .......||.|.+.+    ++..|+|+|.+.
T Consensus        76 -~~~----~~~lG~~~i~l~~~~~~~--~~~~~~~w~~L~~~~~~~~~~~~G~i~l~~~  127 (128)
T cd04024          76 -FAG----KDYLGEFDIALEEVFADG--KTGQSDKWITLKSTRPGKTSVVSGEIHLQFS  127 (128)
T ss_pred             -CCC----CCcceEEEEEHHHhhccc--ccCccceeEEccCcccCccccccceEEEEEE
Confidence             553    899999999999997431  111235799998753    347999999987

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu

>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.85  E-value=4.5e-20  Score=138.42  Aligned_cols=112  Identities=15%  Similarity=0.264  Sum_probs=95.9

Q ss_pred             EEEEEEEEeeCCCCCCCCCcCCcEEEEEECCCCcEEEeeeecCCCCCCeeeeEEEEEecCC-CcEEEEEEEeCCCCCCCC
Q 040360           11 TIELTVLSGEDLRIDRRLIKKNAFAIVQTDTSFDYCTTKVDESGGSHPSWNEKLVIELPMH-ARFITVQVQCKSKSSSSG   89 (198)
Q Consensus        11 ~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~~~~~~T~v~~~~g~nP~WNE~f~f~v~~~-~~~L~~eV~~~~~~~~~g   89 (198)
                      .|.|+|++|++|+..+..+..||||++.+++  ++++|++.+++ .||.|||+|.|.+... ...|.|+|||++.   ++
T Consensus         1 ~~~V~v~~a~~L~~~~~~~~~dPyv~v~~~~--~~~kT~v~~~t-~nP~Wne~f~f~~~~~~~~~l~v~v~d~~~---~~   74 (116)
T cd08376           1 VVTIVLVEGKNLPPMDDNGLSDPYVKFRLGN--EKYKSKVCSKT-LNPQWLEQFDLHLFDDQSQILEIEVWDKDT---GK   74 (116)
T ss_pred             CEEEEEEEEECCCCCCCCCCCCcEEEEEECC--EeEecccccCC-CCCceeEEEEEEecCCCCCEEEEEEEECCC---CC
Confidence            3789999999998777778899999999987  78899999886 9999999999998764 5799999999987   55


Q ss_pred             CCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEeeCCCCCccEEEEEEEE
Q 040360           90 NNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRNAKGDKNGIINVSVR  141 (198)
Q Consensus        90 ~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~~~Gk~~G~I~lsi~  141 (198)
                          +|++||.+.++|.++..+.     ....||+|...    +|+|++.+.
T Consensus        75 ----~~~~iG~~~~~l~~l~~~~-----~~~~w~~L~~~----~G~~~~~~~  113 (116)
T cd08376          75 ----KDEFIGRCEIDLSALPREQ-----THSLELELEDG----EGSLLLLLT  113 (116)
T ss_pred             ----CCCeEEEEEEeHHHCCCCC-----ceEEEEEccCC----CcEEEEEEE
Confidence                3899999999999987543     25689999743    599988887

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei

>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins

Probab=99.85  E-value=2.5e-20  Score=142.14  Aligned_cols=118  Identities=25%  Similarity=0.323  Sum_probs=96.6

Q ss_pred             EEEEEEEEeeCCCCCCCCCcCCcEEEEEECCCCcEEEeeeecCCCCCCeeeeEEEEEecCCCcEEEEEEEeCCCCCCCCC
Q 040360           11 TIELTVLSGEDLRIDRRLIKKNAFAIVQTDTSFDYCTTKVDESGGSHPSWNEKLVIELPMHARFITVQVQCKSKSSSSGN   90 (198)
Q Consensus        11 ~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~~~~~~T~v~~~~g~nP~WNE~f~f~v~~~~~~L~~eV~~~~~~~~~g~   90 (198)
                      .|+|+|++|++|+..+.++..||||++.+++ .+.++|++++++ .||.|||+|.|.+.. ...|.|+|||++.   +++
T Consensus         1 ~l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~-~~~~kT~v~~~t-~nP~Wne~f~~~~~~-~~~l~i~V~d~~~---~~~   74 (123)
T cd08382           1 KVRLTVLCADGLAKRDLFRLPDPFAVITVDG-GQTHSTDVAKKT-LDPKWNEHFDLTVGP-SSIITIQVFDQKK---FKK   74 (123)
T ss_pred             CeEEEEEEecCCCccCCCCCCCcEEEEEECC-ccceEccEEcCC-CCCcccceEEEEeCC-CCEEEEEEEECCC---CCC
Confidence            4899999999998777788999999999985 478899999876 899999999999976 5799999999887   542


Q ss_pred             CCCCCceeEEEEEeCccccCCCCCCCceEeEEEEeeCCC----CCccEEEEEEE
Q 040360           91 NNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRNAK----GDKNGIINVSV  140 (198)
Q Consensus        91 ~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~~~----Gk~~G~I~lsi  140 (198)
                        ++|++||++.|+|.++......    ...||.|+...    +...|+|.+.+
T Consensus        75 --~~d~~lG~~~i~l~~l~~~~~~----~~~~~~l~~~~~~~~~~~~G~v~~~~  122 (123)
T cd08382          75 --KDQGFLGCVRIRANAVLPLKDT----GYQRLDLRKLKKSDNLSVRGKIVVSL  122 (123)
T ss_pred             --CCCceEeEEEEEHHHccccCCC----ccceeEeecCCCCCCceEeeEEEEEe
Confidence              1158999999999999865321    13488887643    56789998875

A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are

>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]

Probab=99.85  E-value=8.9e-21  Score=151.35  Aligned_cols=96  Identities=20%  Similarity=0.296  Sum_probs=87.6

Q ss_pred             CcceEEEEEEEEeeCCCCCCCCCcCCcEEEEEECCCCcEEEeeeecCCCCCCeeeeEEEEEecCCCcEEEEEEEeCCCCC
Q 040360            7 SGYRTIELTVLSGEDLRIDRRLIKKNAFAIVQTDTSFDYCTTKVDESGGSHPSWNEKLVIELPMHARFITVQVQCKSKSS   86 (198)
Q Consensus         7 m~~~~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~~~~~~T~v~~~~g~nP~WNE~f~f~v~~~~~~L~~eV~~~~~~~   86 (198)
                      |.-|.|+|+|++|.+|...+..+++||||+++++.  ++.+|++..++ .||+|||.|+|.+.+....|.++|||++.  
T Consensus         3 ~~vGLL~v~v~~g~~L~~rD~~~sSDPyVVl~lg~--q~lkT~~v~~n-~NPeWNe~ltf~v~d~~~~lkv~VyD~D~--   77 (168)
T KOG1030|consen    3 MLVGLLRVRVKRGKNLAIRDFLGSSDPYVVLELGN--QKLKTRVVYKN-LNPEWNEELTFTVKDPNTPLKVTVYDKDT--   77 (168)
T ss_pred             ccceEEEEEEEeecCeeeeccccCCCCeEEEEECC--eeeeeeeecCC-CCCcccceEEEEecCCCceEEEEEEeCCC--
Confidence            56689999999999998877778999999999999  99999988876 99999999999999988999999999998  


Q ss_pred             CCCCCCCCCceeEEEEEeCccccCCC
Q 040360           87 SSGNNNNHNKIVGFARIPVSDFIGGY  112 (198)
Q Consensus        87 ~~g~~~~~d~~IG~a~IpL~~l~~~~  112 (198)
                       +..    |+++|.|.|+|..+....
T Consensus        78 -fs~----dD~mG~A~I~l~p~~~~~   98 (168)
T KOG1030|consen   78 -FSS----DDFMGEATIPLKPLLEAQ   98 (168)
T ss_pred             -CCc----ccccceeeeccHHHHHHh
Confidence             553    999999999999998764

>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2)

Probab=99.84  E-value=5.2e-20  Score=139.09  Aligned_cols=115  Identities=16%  Similarity=0.204  Sum_probs=95.4

Q ss_pred             EEEEEEEeeCCCCCCCCCcCCcEEEEEECCC-CcEEEeeeecCCCCCCeeeeEEEEEecCC-CcEEEEEEEeCCCCCCCC
Q 040360           12 IELTVLSGEDLRIDRRLIKKNAFAIVQTDTS-FDYCTTKVDESGGSHPSWNEKLVIELPMH-ARFITVQVQCKSKSSSSG   89 (198)
Q Consensus        12 LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~-~~~~~T~v~~~~g~nP~WNE~f~f~v~~~-~~~L~~eV~~~~~~~~~g   89 (198)
                      |.|+|++|++|+..+..++.||||++.+.+. ..+++|++++++ .||+|||+|.|.+... ...|.|+|||++.   ++
T Consensus         2 L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~t-~nP~Wne~f~f~i~~~~~~~l~v~v~d~d~---~~   77 (119)
T cd04036           2 LTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNS-INPVWNETFEFRIQSQVKNVLELTVMDEDY---VM   77 (119)
T ss_pred             eEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceecCC-CCCccceEEEEEeCcccCCEEEEEEEECCC---CC
Confidence            7899999999987777789999999999742 356799999886 9999999999998653 4579999999887   55


Q ss_pred             CCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEeeCCCCCccEEEEEEEEEee
Q 040360           90 NNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRNAKGDKNGIINVSVRSLK  144 (198)
Q Consensus        90 ~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~~~Gk~~G~I~lsi~~f~  144 (198)
                           |++||++.++|+++..+.     ....||+|..   +.+|+|++.+. +.
T Consensus        78 -----~~~iG~~~~~l~~l~~g~-----~~~~~~~L~~---~~~g~l~~~~~-~~  118 (119)
T cd04036          78 -----DDHLGTVLFDVSKLKLGE-----KVRVTFSLNP---QGKEELEVEFL-LE  118 (119)
T ss_pred             -----CcccEEEEEEHHHCCCCC-----cEEEEEECCC---CCCceEEEEEE-ee
Confidence                 899999999999997653     2467999864   45888888887 53

A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o

>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins

Probab=99.84  E-value=7.4e-20  Score=137.53  Aligned_cols=113  Identities=15%  Similarity=0.213  Sum_probs=95.3

Q ss_pred             eEEEEEEEEeeCCCCCCC------CCcCCcEEEEEECCCCcEEEeeeecCCCCCCeeeeEEEEEecC-CCcEEEEEEEeC
Q 040360           10 RTIELTVLSGEDLRIDRR------LIKKNAFAIVQTDTSFDYCTTKVDESGGSHPSWNEKLVIELPM-HARFITVQVQCK   82 (198)
Q Consensus        10 ~~LeVtVlsA~~L~~~~~------~~~~dpYvvv~~~~~~~~~~T~v~~~~g~nP~WNE~f~f~v~~-~~~~L~~eV~~~   82 (198)
                      |.|+|+|++|++|+..+.      .+..||||+|.+++  +.++|++.+++ .||.|||.|.|.+.. ....|.|+|+|+
T Consensus         1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~--~~~kT~~~~~t-~~P~W~e~f~~~v~~~~~~~l~i~v~d~   77 (121)
T cd08391           1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGA--QTFKSKVIKEN-LNPKWNEVYEAVVDEVPGQELEIELFDE   77 (121)
T ss_pred             CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECC--EeEEccccCCC-CCCcccceEEEEeCCCCCCEEEEEEEec
Confidence            579999999999986543      25789999999988  78999999886 999999999999864 457999999998


Q ss_pred             CCCCCCCCCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEeeCCCCCccEEEEEEEE
Q 040360           83 SKSSSSGNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRNAKGDKNGIINVSVR  141 (198)
Q Consensus        83 ~~~~~~g~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~~~Gk~~G~I~lsi~  141 (198)
                      +.   ..     +++||.+.|+|.++..+..     ...||.|.+   ..+|+|+|.++
T Consensus        78 ~~---~~-----~~~iG~~~i~l~~l~~~~~-----~~~w~~L~~---~~~G~~~~~~~  120 (121)
T cd08391          78 DP---DK-----DDFLGRLSIDLGSVEKKGF-----IDEWLPLED---VKSGRLHLKLE  120 (121)
T ss_pred             CC---CC-----CCcEEEEEEEHHHhcccCc-----cceEEECcC---CCCceEEEEEe
Confidence            87   44     8999999999999986532     357999964   37899999987

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular

>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene

Probab=99.83  E-value=1.2e-19  Score=137.99  Aligned_cols=104  Identities=21%  Similarity=0.300  Sum_probs=87.7

Q ss_pred             eEEEEEEEEeeCCCCCCCCCcCCcEEEEEECCCCcEEEeeeecCCCCCCeeeeEEEEEecCC----CcEEEEEEEeCCCC
Q 040360           10 RTIELTVLSGEDLRIDRRLIKKNAFAIVQTDTSFDYCTTKVDESGGSHPSWNEKLVIELPMH----ARFITVQVQCKSKS   85 (198)
Q Consensus        10 ~~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~~~~~~T~v~~~~g~nP~WNE~f~f~v~~~----~~~L~~eV~~~~~~   85 (198)
                      |+|+|+|++|++|+..+..+++||||+|+++.  +.++|++.++++.||.|||+|.|.++..    ...|.|+|+|++. 
T Consensus         1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~~--~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~-   77 (124)
T cd04049           1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCRT--QERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDN-   77 (124)
T ss_pred             CeEEEEEEecCCCCCCCCCCCcCceEEEEECC--EeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECcc-
Confidence            57999999999998777778999999999987  7789998876569999999999999875    5789999999987 


Q ss_pred             CCCCCCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEeeC
Q 040360           86 SSSGNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRN  127 (198)
Q Consensus        86 ~~~g~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~  127 (198)
                        ++.    +++||++.|+|.++..+...     ..||.|..
T Consensus        78 --~~~----d~~iG~~~i~l~~l~~~~~~-----~~~~~l~p  108 (124)
T cd04049          78 --FSD----DDFIGEATIHLKGLFEEGVE-----PGTAELVP  108 (124)
T ss_pred             --CCC----CCeEEEEEEEhHHhhhCCCC-----cCceEeec
Confidence              552    89999999999999876432     34777654

In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai

>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin

Probab=99.82  E-value=3.7e-19  Score=135.89  Aligned_cols=114  Identities=23%  Similarity=0.255  Sum_probs=97.0

Q ss_pred             EEEeeCCCCCCCCCcCCcEEEEEECCCCcEEEeeeecCCCCCCeeeeEEEEEecC---CCcEEEEEEEeCCCCCCCCCCC
Q 040360           16 VLSGEDLRIDRRLIKKNAFAIVQTDTSFDYCTTKVDESGGSHPSWNEKLVIELPM---HARFITVQVQCKSKSSSSGNNN   92 (198)
Q Consensus        16 VlsA~~L~~~~~~~~~dpYvvv~~~~~~~~~~T~v~~~~g~nP~WNE~f~f~v~~---~~~~L~~eV~~~~~~~~~g~~~   92 (198)
                      |++|++|..  ..++.||||+|.++.  .+++|++.+++ .||+|||+|.|.+..   ....|.|+|++++.   .++  
T Consensus         2 vi~a~~L~~--~~g~~Dpyv~v~~~~--~~~kT~v~~~~-~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~---~~~--   71 (127)
T cd08373           2 VVSLKNLPG--LKGKGDRIAKVTFRG--VKKKTRVLENE-LNPVWNETFEWPLAGSPDPDESLEIVVKDYEK---VGR--   71 (127)
T ss_pred             eEEeeCCcc--cCCCCCCEEEEEECC--EeeecceeCCC-cCCcccceEEEEeCCCcCCCCEEEEEEEECCC---CCC--
Confidence            789999986  678899999999987  78899999887 999999999999964   35799999999987   553  


Q ss_pred             CCCceeEEEEEeCccccCCCCCCCceEeEEEEeeCCCCC-ccEEEEEEEEEeeeCC
Q 040360           93 NHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRNAKGD-KNGIINVSVRSLKVAA  147 (198)
Q Consensus        93 ~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~~~Gk-~~G~I~lsi~~f~~~~  147 (198)
                        |++||++.++|+++..+.     ....+|+|.+.+++ .+|+|++++. |.++.
T Consensus        72 --d~~iG~~~~~l~~l~~~~-----~~~~~~~L~~~~~~~~~~~l~l~~~-~~~~~  119 (127)
T cd08373          72 --NRLIGSATVSLQDLVSEG-----LLEVTEPLLDSNGRPTGATISLEVS-YQPPD  119 (127)
T ss_pred             --CceEEEEEEEhhHcccCC-----ceEEEEeCcCCCCCcccEEEEEEEE-EeCCC
Confidence              899999999999998653     24679999887766 5899999999 87554

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.82  E-value=3.7e-19  Score=136.38  Aligned_cols=116  Identities=22%  Similarity=0.282  Sum_probs=94.8

Q ss_pred             EEEEEEEEeeCCCCCCCCCcCCcEEEEEECCCCcEEEeeeecCCCCCCeeeeEEEEEecCCCcEEEEEEEeCCCCC----
Q 040360           11 TIELTVLSGEDLRIDRRLIKKNAFAIVQTDTSFDYCTTKVDESGGSHPSWNEKLVIELPMHARFITVQVQCKSKSS----   86 (198)
Q Consensus        11 ~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~~~~~~T~v~~~~g~nP~WNE~f~f~v~~~~~~L~~eV~~~~~~~----   86 (198)
                      .|+|+|++|++|...+..+..||||+|.++.  ..++|++.+++ .||.|||+|.|.+......|.|+|||++...    
T Consensus         2 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~--~~~kT~~v~~t-~~P~Wne~f~f~~~~~~~~l~i~v~d~d~~~~~~~   78 (127)
T cd04027           2 KISITVVCAQGLIAKDKTGTSDPYVTVQVGK--TKKRTKTIPQN-LNPVWNEKFHFECHNSSDRIKVRVWDEDDDIKSRL   78 (127)
T ss_pred             eEEEEEEECcCCcCCCCCCCcCcEEEEEECC--EeeecceecCC-CCCccceEEEEEecCCCCEEEEEEEECCCCccccc
Confidence            5899999999998777778899999999987  77899998886 9999999999998765678999999987410    


Q ss_pred             ---C-CCCCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEeeCCCC--CccEEEEEEE
Q 040360           87 ---S-SGNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRNAKG--DKNGIINVSV  140 (198)
Q Consensus        87 ---~-~g~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~~~G--k~~G~I~lsi  140 (198)
                         + .+    .+++||.+.|+|.++....       ..||.|...++  +.+|+|.|++
T Consensus        79 ~~~~~~~----~~~~iG~~~i~l~~~~~~~-------~~w~~L~~~~~~~~~~G~i~~~~  127 (127)
T cd04027          79 KQKFTRE----SDDFLGQTIIEVRTLSGEM-------DVWYNLEKRTDKSAVSGAIRLHI  127 (127)
T ss_pred             ceecccc----CCCcceEEEEEhHHccCCC-------CeEEECccCCCCCcEeEEEEEEC
Confidence               0 12    3899999999999885331       36999987544  4799999874

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev

>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.82  E-value=2.5e-19  Score=137.07  Aligned_cols=103  Identities=16%  Similarity=0.143  Sum_probs=83.3

Q ss_pred             EEEEEEEEeeCCCCCCCCCcCCcEEEEEEC----CC-CcEEEeeeecCCCCCCeeeeEEEEEecCC----CcEEEEEEEe
Q 040360           11 TIELTVLSGEDLRIDRRLIKKNAFAIVQTD----TS-FDYCTTKVDESGGSHPSWNEKLVIELPMH----ARFITVQVQC   81 (198)
Q Consensus        11 ~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~----~~-~~~~~T~v~~~~g~nP~WNE~f~f~v~~~----~~~L~~eV~~   81 (198)
                      +|.|+|++|++|+..+ .+..||||+|++-    ++ .++++|++.+++ .||+|||+|.|.++..    ...|.|+|+|
T Consensus         1 kL~V~Vi~A~~L~~~d-~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~t-lnPvwNE~f~F~v~~~~~~~~~~L~~~V~D   78 (120)
T cd08395           1 KVTVKVVAANDLKWQT-TGMFRPFVEVNLIGPHLSDKKRKFATKSKNNN-WSPKYNETFQFILGNEDDPESYELHICVKD   78 (120)
T ss_pred             CEEEEEEECcCCCccc-CCCCCCEEEEEEecCCCcccccEeeeEEecCC-CCCccCcEEEEEeeCcCCCceeEEEEEEEE
Confidence            4899999999998765 4889999999983    21 246789999765 9999999999999743    2579999999


Q ss_pred             CCCCCCCCCCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEeeC
Q 040360           82 KSKSSSSGNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRN  127 (198)
Q Consensus        82 ~~~~~~~g~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~  127 (198)
                      ++.   .+    +|++||++.|||.++..+.     ....|++|..
T Consensus        79 ~d~---~~----~dd~IG~~~l~l~~~~~~~-----~~~~w~~L~~  112 (120)
T cd08395          79 YCF---AR----DDRLVGVTVLQLRDIAQAG-----SCACWLPLGR  112 (120)
T ss_pred             ecc---cC----CCCEEEEEEEEHHHCcCCC-----cEEEEEECcC
Confidence            876   55    3889999999999998654     1457999865

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi

>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins

Probab=99.82  E-value=3.4e-19  Score=135.71  Aligned_cols=105  Identities=21%  Similarity=0.238  Sum_probs=90.4

Q ss_pred             eEEEEEEEEeeCCCCCCCCCcCCcEEEEEECCCCcEEEeeeecCCCCCCeeeeEEEEEecCCCcEEEEEEEeCCCCCCCC
Q 040360           10 RTIELTVLSGEDLRIDRRLIKKNAFAIVQTDTSFDYCTTKVDESGGSHPSWNEKLVIELPMHARFITVQVQCKSKSSSSG   89 (198)
Q Consensus        10 ~~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~~~~~~T~v~~~~g~nP~WNE~f~f~v~~~~~~L~~eV~~~~~~~~~g   89 (198)
                      |.|+|+|++|++|+..+.++.+||||+|+++. ...++|++.+++ .||.|||.|.|.+....+.|.|+|+|++.   ++
T Consensus         1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~~-~~~~kT~~~~~t-~~P~Wne~f~~~v~~~~~~L~v~v~d~~~---~~   75 (120)
T cd04045           1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVNG-IVKGRTVTISNT-LNPVWDEVLYVPVTSPNQKITLEVMDYEK---VG   75 (120)
T ss_pred             CeEEEEEEeeECCCCccCCCCcCCEEEEEECC-EEeeceeEECCC-cCCccCceEEEEecCCCCEEEEEEEECCC---CC
Confidence            57999999999998877788999999999976 467899988775 99999999999997766899999999987   66


Q ss_pred             CCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEeeCCC
Q 040360           90 NNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRNAK  129 (198)
Q Consensus        90 ~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~~~  129 (198)
                      +    |++||++.++|.++..+.      ...||.|.+.+
T Consensus        76 ~----d~~IG~~~~~l~~l~~~~------~~~~~~~~~~~  105 (120)
T cd04045          76 K----DRSLGSVEINVSDLIKKN------EDGKYVEYDDE  105 (120)
T ss_pred             C----CCeeeEEEEeHHHhhCCC------CCceEEecCCC
Confidence            3    889999999999998763      24699988754

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks)

Probab=99.82  E-value=2.1e-19  Score=137.21  Aligned_cols=103  Identities=20%  Similarity=0.202  Sum_probs=86.3

Q ss_pred             ceEEEEEEEEeeCCCCCCCCCcCCcEEEEEECCC---CcEEEeeeecCCCCCCeeeeEEEEEe-cC---CCcEEEEEEEe
Q 040360            9 YRTIELTVLSGEDLRIDRRLIKKNAFAIVQTDTS---FDYCTTKVDESGGSHPSWNEKLVIEL-PM---HARFITVQVQC   81 (198)
Q Consensus         9 ~~~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~---~~~~~T~v~~~~g~nP~WNE~f~f~v-~~---~~~~L~~eV~~   81 (198)
                      .+.|.|+|++|++|...+ .+.+||||+|.+.++   ..+++|++++++ .||+|||+|.|++ +.   ....|.|+|||
T Consensus        12 ~~~L~V~Vi~A~~L~~~~-~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~-~nP~wnE~F~f~~~~~~~l~~~~L~~~V~d   89 (122)
T cd08381          12 NGTLFVMVMHAKNLPLLD-GSDPDPYVKTYLLPDPQKTTKRKTKVVRKT-RNPTFNEMLVYDGLPVEDLQQRVLQVSVWS   89 (122)
T ss_pred             CCEEEEEEEEeeCCCCCC-CCCCCCEEEEEEeeCCccCCceeCCccCCC-CCCCcccEEEEecCChHHhCCCEEEEEEEe
Confidence            478999999999998777 788999999999853   247899999887 9999999999997 43   35789999999


Q ss_pred             CCCCCCCCCCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEe
Q 040360           82 KSKSSSSGNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRL  125 (198)
Q Consensus        82 ~~~~~~~g~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L  125 (198)
                      ++.   ++    ++++||++.|+|+++..+..     ...||+|
T Consensus        90 ~d~---~~----~~~~lG~~~i~l~~l~~~~~-----~~~W~~L  121 (122)
T cd08381          90 HDS---LV----ENEFLGGVCIPLKKLDLSQE-----TEKWYPL  121 (122)
T ss_pred             CCC---Cc----CCcEEEEEEEeccccccCCC-----ccceEEC
Confidence            987   55    38999999999999986532     2468887

There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut

>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins

Probab=99.81  E-value=2.6e-19  Score=132.72  Aligned_cols=101  Identities=15%  Similarity=0.265  Sum_probs=86.3

Q ss_pred             EEEEEEEEeeCCCCCCCCCcCCcEEEEEECCCCcEEEeeeecCCCCCCeeeeEEEEEecC-CCcEEEEEEEeCCCCCCCC
Q 040360           11 TIELTVLSGEDLRIDRRLIKKNAFAIVQTDTSFDYCTTKVDESGGSHPSWNEKLVIELPM-HARFITVQVQCKSKSSSSG   89 (198)
Q Consensus        11 ~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~~~~~~T~v~~~~g~nP~WNE~f~f~v~~-~~~~L~~eV~~~~~~~~~g   89 (198)
                      .|.|+|++|++|+..+..+.+||||+|++++  ++++|++.+++ .||+|||.|.|.+.. +...|.|+|+|++.     
T Consensus         1 ~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~--~~~kT~v~~~t-~nP~Wne~f~f~v~~~~~~~l~v~v~d~~~-----   72 (105)
T cd04050           1 LLFVYLDSAKNLPLAKSTKEPSPYVELTVGK--TTQKSKVKERT-NNPVWEEGFTFLVRNPENQELEIEVKDDKT-----   72 (105)
T ss_pred             CEEEEEeeecCCCCcccCCCCCcEEEEEECC--EEEeCccccCC-CCCcccceEEEEeCCCCCCEEEEEEEECCC-----
Confidence            3889999999998777778999999999998  88999998876 999999999999976 45789999998653     


Q ss_pred             CCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEeeC
Q 040360           90 NNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRN  127 (198)
Q Consensus        90 ~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~  127 (198)
                           +++||.+.|+|.++....   +.....||+|.+
T Consensus        73 -----~~~iG~~~i~l~~l~~~~---~~~~~~w~~L~~  102 (105)
T cd04050          73 -----GKSLGSLTLPLSELLKEP---DLTLDQPFPLDN  102 (105)
T ss_pred             -----CCccEEEEEEHHHhhccc---cceeeeeEecCC
Confidence                 679999999999998653   223567999964

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm

>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD)

Probab=99.81  E-value=3.2e-19  Score=133.77  Aligned_cols=94  Identities=20%  Similarity=0.241  Sum_probs=80.3

Q ss_pred             eEEEEEEEEeeCCCCCCCC----CcCCcEEEEEECCCCcEEEeeeecCCCCCCeeeeEEEEEecCC--CcEEEEEEEeCC
Q 040360           10 RTIELTVLSGEDLRIDRRL----IKKNAFAIVQTDTSFDYCTTKVDESGGSHPSWNEKLVIELPMH--ARFITVQVQCKS   83 (198)
Q Consensus        10 ~~LeVtVlsA~~L~~~~~~----~~~dpYvvv~~~~~~~~~~T~v~~~~g~nP~WNE~f~f~v~~~--~~~L~~eV~~~~   83 (198)
                      |.|.|+|++|++|+..+..    +..||||+|.++.  ++++|++++++ .||+|||.|.|.+...  ...|.|+|||++
T Consensus         1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~--~~~kT~v~~~t-~nPvWne~f~f~v~~~~~~~~L~~~V~D~d   77 (108)
T cd04039           1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGR--RVFRTSWRRHT-LNPVFNERLAFEVYPHEKNFDIQFKVLDKD   77 (108)
T ss_pred             CEEEEEEEeeeCCCCccccCCCCCccCceEEEEECC--EeEeeeeecCC-CCCcccceEEEEEeCccCCCEEEEEEEECC
Confidence            5799999999999864422    3589999999987  78899999987 9999999999998542  358999999998


Q ss_pred             CCCCCCCCCCCCceeEEEEEeCccccCCCC
Q 040360           84 KSSSSGNNNNHNKIVGFARIPVSDFIGGYA  113 (198)
Q Consensus        84 ~~~~~g~~~~~d~~IG~a~IpL~~l~~~~~  113 (198)
                      .   .+    +|++||++.|+|++|..++.
T Consensus        78 ~---~~----~dd~IG~~~l~L~~l~~~~~  100 (108)
T cd04039          78 K---FS----FNDYVATGSLSVQELLNAAP  100 (108)
T ss_pred             C---CC----CCcceEEEEEEHHHHHhhCC
Confidence            7   66    39999999999999998863

PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM

>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.81  E-value=3.6e-19  Score=137.35  Aligned_cols=100  Identities=16%  Similarity=0.128  Sum_probs=84.5

Q ss_pred             eEEEEEEEEeeCCCCCCCCCcCCcEEEEEECCCCcEEEeeeecCCCCCCeeeeEEEEEecCCCcEEEEEEEeCCCCCCCC
Q 040360           10 RTIELTVLSGEDLRIDRRLIKKNAFAIVQTDTSFDYCTTKVDESGGSHPSWNEKLVIELPMHARFITVQVQCKSKSSSSG   89 (198)
Q Consensus        10 ~~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~~~~~~T~v~~~~g~nP~WNE~f~f~v~~~~~~L~~eV~~~~~~~~~g   89 (198)
                      +.|.|+|++|++|...+   ..||||+|++++  ++.+|++.++  .||+|||+|.|.+......|.|+|||++.   +.
T Consensus         2 ~~L~V~Vv~Ar~L~~~~---~~dPYV~Ik~g~--~k~kT~v~~~--~nP~WnE~F~F~~~~~~~~L~v~V~dkd~---~~   71 (127)
T cd08394           2 SLLCVLVKKAKLDGAPD---KFNTYVTLKVQN--VKSTTIAVRG--SQPCWEQDFMFEINRLDLGLVIELWNKGL---IW   71 (127)
T ss_pred             ceEEEEEEEeeCCCCCC---CCCCeEEEEECC--EEeEeeECCC--CCCceeeEEEEEEcCCCCEEEEEEEeCCC---cC
Confidence            47999999999997544   358999999988  7889999865  59999999999997766679999999886   66


Q ss_pred             CCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEeeC
Q 040360           90 NNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRN  127 (198)
Q Consensus        90 ~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~  127 (198)
                           |++||++.|||.++..+.   ..+...||+|..
T Consensus        72 -----DD~lG~v~i~L~~v~~~~---~~~~~~Wy~L~~  101 (127)
T cd08394          72 -----DTLVGTVWIPLSTIRQSN---EEGPGEWLTLDS  101 (127)
T ss_pred             -----CCceEEEEEEhHHcccCC---CCCCCccEecCh
Confidence                 999999999999998763   233457999985

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi

>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins

Probab=99.81  E-value=6.8e-19  Score=131.65  Aligned_cols=113  Identities=24%  Similarity=0.315  Sum_probs=95.2

Q ss_pred             EEEEEEEeeCCCCCCCCCcCCcEEEEEECCCCcEEEeeeecCCCCCCeeeeEEEEEecC-CCcEEEEEEEeCCCCCCCCC
Q 040360           12 IELTVLSGEDLRIDRRLIKKNAFAIVQTDTSFDYCTTKVDESGGSHPSWNEKLVIELPM-HARFITVQVQCKSKSSSSGN   90 (198)
Q Consensus        12 LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~~~~~~T~v~~~~g~nP~WNE~f~f~v~~-~~~~L~~eV~~~~~~~~~g~   90 (198)
                      |+|+|++|++|...+..+..||||+|.+++ ...++|++..++ .||.|||+|.|.+.. ..+.|.|+|||++.   .++
T Consensus         1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~~-~~~~~T~v~~~~-~~P~Wne~f~~~~~~~~~~~l~~~v~d~~~---~~~   75 (115)
T cd04040           1 LTVDVISAENLPSADRNGKSDPFVKFYLNG-EKVFKTKTIKKT-LNPVWNESFEVPVPSRVRAVLKVEVYDWDR---GGK   75 (115)
T ss_pred             CEEEEEeeeCCCCCCCCCCCCCeEEEEECC-CcceeeceecCC-CCCcccccEEEEeccCCCCEEEEEEEeCCC---CCC
Confidence            689999999998777778899999999987 466899998775 999999999999976 35789999999987   553


Q ss_pred             CCCCCceeEEEEEeCccccCCCCCCCceEeEEEEeeCCCCCccEEEEE
Q 040360           91 NNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRNAKGDKNGIINV  138 (198)
Q Consensus        91 ~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~~~Gk~~G~I~l  138 (198)
                          +++||++.+++.++..+.     ....+++|....+...|+|-|
T Consensus        76 ----~~~iG~~~~~l~~l~~~~-----~~~~~~~L~~~g~~~~~~~~~  114 (115)
T cd04040          76 ----DDLLGSAYIDLSDLEPEE-----TTELTLPLDGQGGGKLGAVFL  114 (115)
T ss_pred             ----CCceEEEEEEHHHcCCCC-----cEEEEEECcCCCCccCceEEc
Confidence                899999999999997653     246799998777778888754

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin

Probab=99.80  E-value=1.6e-18  Score=134.15  Aligned_cols=121  Identities=14%  Similarity=0.197  Sum_probs=96.4

Q ss_pred             EEEEEEEEeeCCCCCCCCCcCCcEEEEEECCCCcEEEeeeecCCCCCCeeeeEEEEEecC----------CCcEEEEEEE
Q 040360           11 TIELTVLSGEDLRIDRRLIKKNAFAIVQTDTSFDYCTTKVDESGGSHPSWNEKLVIELPM----------HARFITVQVQ   80 (198)
Q Consensus        11 ~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~~~~~~T~v~~~~g~nP~WNE~f~f~v~~----------~~~~L~~eV~   80 (198)
                      .|+|+|++|++|...+..+..||||+|.++.  ++.+|++.+++ .||.|||.|.|.+..          ....|.|+||
T Consensus         2 ~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~--~~~kT~v~~~t-~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~   78 (135)
T cd04017           2 QLRAYIYQARDLLAADKSGLSDPFARVSFLN--QSQETEVIKET-LSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELF   78 (135)
T ss_pred             EEEEEEEEeecCcCCCCCCCCCCEEEEEECC--eeeEeeeEcCC-CCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEE
Confidence            4899999999998878888999999999987  78899999886 999999999997421          1257999999


Q ss_pred             eCCCCCCCCCCCCCCceeEEEEE-eCccccCCCCCCCceEeEEEEeeCCCCCccEEEEEEEEEeee
Q 040360           81 CKSKSSSSGNNNNHNKIVGFARI-PVSDFIGGYAPENYLHFLSYRLRNAKGDKNGIINVSVRSLKV  145 (198)
Q Consensus        81 ~~~~~~~~g~~~~~d~~IG~a~I-pL~~l~~~~~~~~~~~~~sy~L~~~~Gk~~G~I~lsi~~f~~  145 (198)
                      |++.   .+    +|++||++.+ |+..+....  .......||.|. +.|+.+|+|.|++. +.+
T Consensus        79 d~d~---~~----~d~~iG~~~i~~~~~~~~~~--~~~~~~~W~~L~-~~~~~~Geil~~~~-~~~  133 (135)
T cd04017          79 DQDS---VG----KDEFLGRSVAKPLVKLDLEE--DFPPKLQWFPIY-KGGQSAGELLAAFE-LIE  133 (135)
T ss_pred             eCcC---CC----CCccceEEEeeeeeecccCC--CCCCCceEEEee-cCCCchhheeEEeE-EEE
Confidence            9987   56    3899999997 555444321  223456799997 45678999999998 653

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme

>cd04041 C2A_fungal C2 domain first repeat; fungal group

Probab=99.80  E-value=4e-19  Score=133.06  Aligned_cols=94  Identities=11%  Similarity=0.161  Sum_probs=80.6

Q ss_pred             eEEEEEEEEeeCCCCCCCC-CcCCcEEEEEECCC-CcEEEeeeecCCCCCCeeeeEEEEEecCC----CcEEEEEEEeCC
Q 040360           10 RTIELTVLSGEDLRIDRRL-IKKNAFAIVQTDTS-FDYCTTKVDESGGSHPSWNEKLVIELPMH----ARFITVQVQCKS   83 (198)
Q Consensus        10 ~~LeVtVlsA~~L~~~~~~-~~~dpYvvv~~~~~-~~~~~T~v~~~~g~nP~WNE~f~f~v~~~----~~~L~~eV~~~~   83 (198)
                      |.|+|+|++|++|...+.. ++.||||+|.+.+. ...++|++++++ .||+|||+|.|.+...    ...|.|+|||++
T Consensus         1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t-~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d   79 (111)
T cd04041           1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKD-LNPVWEETWFVLVTPDEVKAGERLSCRLWDSD   79 (111)
T ss_pred             CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeECCC-CCCccceeEEEEeCchhccCCCEEEEEEEeCC
Confidence            5899999999999877766 88999999999652 356799999987 9999999999988642    468999999998


Q ss_pred             CCCCCCCCCCCCceeEEEEEeCccccCC
Q 040360           84 KSSSSGNNNNHNKIVGFARIPVSDFIGG  111 (198)
Q Consensus        84 ~~~~~g~~~~~d~~IG~a~IpL~~l~~~  111 (198)
                      .   +++    |++||++.|+|+++.+.
T Consensus        80 ~---~~~----dd~lG~~~i~l~~l~~~  100 (111)
T cd04041          80 R---FTA----DDRLGRVEIDLKELIED  100 (111)
T ss_pred             C---CCC----CCcceEEEEEHHHHhcC
Confidence            7   553    89999999999999854

C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan

>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase

Probab=99.80  E-value=2.3e-18  Score=131.79  Aligned_cols=120  Identities=19%  Similarity=0.241  Sum_probs=95.0

Q ss_pred             eEEEEEEEEeeCCCCCCCCCcCCcEEEEEECCCCcEEEeeeecCCCCCCeeeeEEEEEecCCCcEEEEEEEeCCCCCCCC
Q 040360           10 RTIELTVLSGEDLRIDRRLIKKNAFAIVQTDTSFDYCTTKVDESGGSHPSWNEKLVIELPMHARFITVQVQCKSKSSSSG   89 (198)
Q Consensus        10 ~~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~~~~~~T~v~~~~g~nP~WNE~f~f~v~~~~~~L~~eV~~~~~~~~~g   89 (198)
                      ..|+|+|++|+.+. .+..+++||||+|.+++ ....+|++.+++ .||.|||.|.|.+.. ...|.|+|||++.   .+
T Consensus         2 ~~L~V~i~~a~l~~-~~~~~~~dPyv~v~~~~-~~~~kT~v~~~t-~~P~Wne~f~~~~~~-~~~l~~~V~d~~~---~~   74 (125)
T cd04021           2 SQLQITVESAKLKS-NSKSFKPDPYVEVTVDG-QPPKKTEVSKKT-SNPKWNEHFTVLVTP-QSTLEFKVWSHHT---LK   74 (125)
T ss_pred             ceEEEEEEeeECCC-CCcCCCCCeEEEEEECC-cccEEeeeeCCC-CCCccccEEEEEeCC-CCEEEEEEEeCCC---CC
Confidence            46999999999444 44478899999999987 347899998875 999999999999875 4789999999987   55


Q ss_pred             CCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEeeCCC---CCccEEEEEEE
Q 040360           90 NNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRNAK---GDKNGIINVSV  140 (198)
Q Consensus        90 ~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~~~---Gk~~G~I~lsi  140 (198)
                          .+++||++.++|+++.......-.....++.|.+++   ++..|.|++.+
T Consensus        75 ----~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~  124 (125)
T cd04021          75 ----ADVLLGEASLDLSDILKNHNGKLENVKLTLNLSSENKGSSVKVGELTVIL  124 (125)
T ss_pred             ----CCcEEEEEEEEHHHhHhhcCCCccceEEEEEEEccCCCcceeeeeEEEEe
Confidence                389999999999999865321112234688888644   47899998875

E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e

>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC)

Probab=99.80  E-value=2.8e-18  Score=130.12  Aligned_cols=116  Identities=21%  Similarity=0.369  Sum_probs=95.3

Q ss_pred             eEEEEEEEEeeCCCCCC--CCCcCCcEEEEEECCC----CcEEEeeeecCCCCCCeeeeEEEEEecCC-CcEEEEEEEeC
Q 040360           10 RTIELTVLSGEDLRIDR--RLIKKNAFAIVQTDTS----FDYCTTKVDESGGSHPSWNEKLVIELPMH-ARFITVQVQCK   82 (198)
Q Consensus        10 ~~LeVtVlsA~~L~~~~--~~~~~dpYvvv~~~~~----~~~~~T~v~~~~g~nP~WNE~f~f~v~~~-~~~L~~eV~~~   82 (198)
                      ..|+|+|++|++|+..+  ..+..||||++++...    ..+++|+++.+++.||.|||+|.|.+... ...|.|+|+|+
T Consensus         2 ~~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~~~l~~~V~d~   81 (128)
T cd00275           2 LTLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVVYDE   81 (128)
T ss_pred             eEEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCCeEEEEEEEEeC
Confidence            57999999999998655  4678999999999531    25689999887756999999999998643 46899999998


Q ss_pred             CCCCCCCCCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEeeCCCCC--ccEEEEEEEE
Q 040360           83 SKSSSSGNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRNAKGD--KNGIINVSVR  141 (198)
Q Consensus        83 ~~~~~~g~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~~~Gk--~~G~I~lsi~  141 (198)
                      +.   ..     +++||++.++|.++..+.        .+++|+++.|+  ..|.|.+.++
T Consensus        82 ~~---~~-----~~~iG~~~~~l~~l~~g~--------~~~~l~~~~~~~~~~~~l~v~~~  126 (128)
T cd00275          82 DS---GD-----DDFLGQACLPLDSLRQGY--------RHVPLLDSKGEPLELSTLFVHID  126 (128)
T ss_pred             CC---CC-----CcEeEEEEEEhHHhcCce--------EEEEecCCCCCCCcceeEEEEEE
Confidence            87   44     899999999999996542        47899988885  5788888877

PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking

>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone

Probab=99.80  E-value=6.8e-19  Score=131.61  Aligned_cols=104  Identities=16%  Similarity=0.189  Sum_probs=86.5

Q ss_pred             EEEEEEEeeCCCCCCC-CCcCCcEEEEEECCCCcEEEeeeecCCCCCCee-eeEEEEEecCC---CcEEEEEEEeCCCCC
Q 040360           12 IELTVLSGEDLRIDRR-LIKKNAFAIVQTDTSFDYCTTKVDESGGSHPSW-NEKLVIELPMH---ARFITVQVQCKSKSS   86 (198)
Q Consensus        12 LeVtVlsA~~L~~~~~-~~~~dpYvvv~~~~~~~~~~T~v~~~~g~nP~W-NE~f~f~v~~~---~~~L~~eV~~~~~~~   86 (198)
                      |+|+|++|++|+..+. .+..||||+|.+++  ++++|++++++ .||.| ||+|.|.++..   .+.|.|+|+|++.  
T Consensus         1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~--~~~kT~v~~~~-~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~--   75 (110)
T cd08688           1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGS--TTYKTDVVKKS-LNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDT--   75 (110)
T ss_pred             CEEEEEEEECCCccccCCCCCCceEEEEECC--eeEecceecCC-CCCcccCcEEEEEcChHHcCCCeEEEEEEeCCC--
Confidence            6899999999986553 57899999999988  88999999886 99999 99999999763   4689999999987  


Q ss_pred             CCCCCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEeeC
Q 040360           87 SSGNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRN  127 (198)
Q Consensus        87 ~~g~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~  127 (198)
                       ++    ++++||++.++|.++....  ++.....||.|.+
T Consensus        76 -~~----~~~~iG~~~~~l~~l~~~~--~~~~~~~w~~l~~  109 (110)
T cd08688          76 -YS----ANDAIGKVYIDLNPLLLKD--SVSQISGWFPIYD  109 (110)
T ss_pred             -CC----CCCceEEEEEeHHHhcccC--CccccCCeEEccc
Confidence             66    3899999999999998731  1122456999875

The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a

>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group

Probab=99.80  E-value=3.4e-18  Score=129.92  Aligned_cols=119  Identities=16%  Similarity=0.249  Sum_probs=95.6

Q ss_pred             EEEEEEEEeeCCCCCCCCCcCCcEEEEEECCC-CcEEEeeeecCCCCCCeeeeEEEEEecCC-CcEEEEEEEeCCCCCCC
Q 040360           11 TIELTVLSGEDLRIDRRLIKKNAFAIVQTDTS-FDYCTTKVDESGGSHPSWNEKLVIELPMH-ARFITVQVQCKSKSSSS   88 (198)
Q Consensus        11 ~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~-~~~~~T~v~~~~g~nP~WNE~f~f~v~~~-~~~L~~eV~~~~~~~~~   88 (198)
                      .|.|+|++|++|+..+..+..||||+|.+... ...++|++.+++ .||.|||+|.|.+... ...|.|+|||++.   +
T Consensus         2 ~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~t-~~P~Wne~f~f~i~~~~~~~L~i~v~d~d~---~   77 (126)
T cd04043           2 LFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDT-LNPRWDEEFELEVPAGEPLWISATVWDRSF---V   77 (126)
T ss_pred             EEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEecCC-CCCcccceEEEEcCCCCCCEEEEEEEECCC---C
Confidence            58999999999988777789999999998752 246799998886 9999999999999763 5789999999987   5


Q ss_pred             CCCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEeeCCCCCccEEEEEEEEEeee
Q 040360           89 GNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRNAKGDKNGIINVSVRSLKV  145 (198)
Q Consensus        89 g~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~~~Gk~~G~I~lsi~~f~~  145 (198)
                      +    ++++||++.++|.++..+.  ++.....|+.|.     +.|+|+|.+. +..
T Consensus        78 ~----~~~~iG~~~i~l~~~~~~~--~~~~~~~w~~l~-----~~g~i~l~~~-~~~  122 (126)
T cd04043          78 G----KHDLCGRASLKLDPKRFGD--DGLPREIWLDLD-----TQGRLLLRVS-MEG  122 (126)
T ss_pred             C----CCceEEEEEEecCHHHcCC--CCCCceEEEEcC-----CCCeEEEEEE-Eee
Confidence            5    3899999999999865331  122346799985     2688888888 654

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap

>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin

Probab=99.80  E-value=1.2e-18  Score=130.20  Aligned_cols=102  Identities=13%  Similarity=0.147  Sum_probs=86.0

Q ss_pred             EEEEEEEEeeCCCCCCCCCcCCcEEEEEECCCCcEEEeeeecCCCCCCeeeeEEEEEecCC-----CcEEEEEEEeCCCC
Q 040360           11 TIELTVLSGEDLRIDRRLIKKNAFAIVQTDTSFDYCTTKVDESGGSHPSWNEKLVIELPMH-----ARFITVQVQCKSKS   85 (198)
Q Consensus        11 ~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~~~~~~T~v~~~~g~nP~WNE~f~f~v~~~-----~~~L~~eV~~~~~~   85 (198)
                      .|+|+|++|++|.    .+..||||+|++++  ++++|++.+++ .||.|||+|.|.+...     ...|.|+|+|++. 
T Consensus         5 ~l~V~v~~a~~L~----~~~~dpyv~v~~~~--~~~kT~~~~~t-~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~-   76 (111)
T cd04011           5 QVRVRVIEARQLV----GGNIDPVVKVEVGG--QKKYTSVKKGT-NCPFYNEYFFFNFHESPDELFDKIIKISVYDSRS-   76 (111)
T ss_pred             EEEEEEEEcccCC----CCCCCCEEEEEECC--EeeeeeEEecc-CCCccccEEEEecCCCHHHHhcCeEEEEEEcCcc-
Confidence            5899999999998    46789999999998  78899998876 8999999999997432     3589999999887 


Q ss_pred             CCCCCCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEeeCC
Q 040360           86 SSSGNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRNA  128 (198)
Q Consensus        86 ~~~g~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~~  128 (198)
                        ++    +|++||++.|+|+++..+.  ++.....||.|.++
T Consensus        77 --~~----~~~~iG~~~i~l~~v~~~~--~~~~~~~w~~L~~~  111 (111)
T cd04011          77 --LR----SDTLIGSFKLDVGTVYDQP--DHAFLRKWLLLTDP  111 (111)
T ss_pred             --cc----cCCccEEEEECCccccCCC--CCcceEEEEEeeCc
Confidence              55    2899999999999998763  33456779999864

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme

>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3

Probab=99.80  E-value=9e-19  Score=135.10  Aligned_cols=109  Identities=20%  Similarity=0.194  Sum_probs=88.1

Q ss_pred             CcceEEEEEEEEeeCCCCCCC-CCcCCcEEEEEECCC---CcEEEeeeecCCCCCCeeeeEEEEEecCC---CcEEEEEE
Q 040360            7 SGYRTIELTVLSGEDLRIDRR-LIKKNAFAIVQTDTS---FDYCTTKVDESGGSHPSWNEKLVIELPMH---ARFITVQV   79 (198)
Q Consensus         7 m~~~~LeVtVlsA~~L~~~~~-~~~~dpYvvv~~~~~---~~~~~T~v~~~~g~nP~WNE~f~f~v~~~---~~~L~~eV   79 (198)
                      ...+.|.|+|++|+||...+. .+..||||++.+.++   ..+.+|++.+++ .||+|||+|.|.++..   ...|.|.|
T Consensus        12 ~~~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t-~nPvfNE~F~f~v~~~~l~~~~L~v~V   90 (128)
T cd08392          12 FRTSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGT-VNPVFNETLKYVVEADLLSSRQLQVSV   90 (128)
T ss_pred             CCCCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccCC-CCCccceEEEEEcCHHHhCCcEEEEEE
Confidence            345799999999999987665 388999999999863   247799999886 9999999999999763   46999999


Q ss_pred             EeCCCCCCCCCCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEe
Q 040360           80 QCKSKSSSSGNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRL  125 (198)
Q Consensus        80 ~~~~~~~~~g~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L  125 (198)
                      ++.+.   ++    ++++||++.|+|+++.-..  .......||.|
T Consensus        91 ~~~~~---~~----~~~~lG~~~i~L~~~~~~~--~~~~~~~W~~l  127 (128)
T cd08392          91 WHSRT---LK----RRVFLGEVLIPLADWDFED--TDSQRFLWYPL  127 (128)
T ss_pred             EeCCC---Cc----CcceEEEEEEEcCCcccCC--CCccccceEEC
Confidence            99887   55    3899999999999985432  12235679987

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids

>cd08677 C2A_Synaptotagmin-13 C2 domain

Probab=99.79  E-value=9e-19  Score=133.67  Aligned_cols=93  Identities=17%  Similarity=0.294  Sum_probs=79.3

Q ss_pred             cceEEEEEEEEeeCCCCCCCCCcCCcEEEEEECCC--CcEEEeeeecCCCCCCeeeeEEEEEecCC---CcEEEEEEEeC
Q 040360            8 GYRTIELTVLSGEDLRIDRRLIKKNAFAIVQTDTS--FDYCTTKVDESGGSHPSWNEKLVIELPMH---ARFITVQVQCK   82 (198)
Q Consensus         8 ~~~~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~--~~~~~T~v~~~~g~nP~WNE~f~f~v~~~---~~~L~~eV~~~   82 (198)
                      ..+.|.|+|++|++|+.   .+.+||||+|.+.++  ..+++|+|.+++ .||+|||+|.|+++.+   ...|.|+|+|.
T Consensus        12 ~~~~L~V~vikA~~L~~---~g~sDPYVKv~L~~~~k~~k~kT~v~rkt-lnPvfnE~f~F~v~~~~l~~~tL~~~V~d~   87 (118)
T cd08677          12 QKAELHVNILEAENISV---DAGCECYISGCVSVSEGQKEAQTALKKLA-LHTQWEEELVFPLPEEESLDGTLTLTLRCC   87 (118)
T ss_pred             cCCEEEEEEEEecCCCC---CCCCCeEEEEEEcCCcCccEEEcceecCC-CCCccccEEEEeCCHHHhCCcEEEEEEEeC
Confidence            35789999999999982   356899999999753  357899999987 9999999999999863   46899999999


Q ss_pred             CCCCCCCCCCCCCceeEEEEEeCccccCC
Q 040360           83 SKSSSSGNNNNHNKIVGFARIPVSDFIGG  111 (198)
Q Consensus        83 ~~~~~~g~~~~~d~~IG~a~IpL~~l~~~  111 (198)
                      +.   ++    ++++||++.++|.++..+
T Consensus        88 Dr---fs----~~d~IG~v~l~l~~~~~~  109 (118)
T cd08677          88 DR---FS----RHSTLGELRLKLADVSMM  109 (118)
T ss_pred             CC---CC----CCceEEEEEEccccccCC
Confidence            98   76    499999999999987443

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain

>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5

Probab=99.79  E-value=1.7e-18  Score=132.74  Aligned_cols=105  Identities=16%  Similarity=0.217  Sum_probs=85.9

Q ss_pred             cceEEEEEEEEeeCCCCCCC-CCcCCcEEEEEECCC---CcEEEeeeecCCCCCCeeeeEEEEEecC---CCcEEEEEEE
Q 040360            8 GYRTIELTVLSGEDLRIDRR-LIKKNAFAIVQTDTS---FDYCTTKVDESGGSHPSWNEKLVIELPM---HARFITVQVQ   80 (198)
Q Consensus         8 ~~~~LeVtVlsA~~L~~~~~-~~~~dpYvvv~~~~~---~~~~~T~v~~~~g~nP~WNE~f~f~v~~---~~~~L~~eV~   80 (198)
                      ..+.|.|+|++|+||...+. .+..||||+|.+.++   ..+.+|++.+++ .||+|||+|.|.++.   ....|.|+||
T Consensus        13 ~~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t-~nP~wnE~f~f~i~~~~l~~~~L~~~V~   91 (125)
T cd04029          13 KTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNT-TNPVYNETLKYSISHSQLETRTLQLSVW   91 (125)
T ss_pred             CCCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeeeCC-CCCcccceEEEECCHHHhCCCEEEEEEE
Confidence            45789999999999976543 478999999999753   236799998876 999999999999975   3468999999


Q ss_pred             eCCCCCCCCCCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEe
Q 040360           81 CKSKSSSSGNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRL  125 (198)
Q Consensus        81 ~~~~~~~~g~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L  125 (198)
                      |++.   ++    ++++||++.|+|.++.....     ...||+|
T Consensus        92 d~~~---~~----~~~~lG~~~i~l~~~~~~~~-----~~~w~~l  124 (125)
T cd04029          92 HYDR---FG----RNTFLGEVEIPLDSWNFDSQ-----HEECLPL  124 (125)
T ss_pred             ECCC---CC----CCcEEEEEEEeCCcccccCC-----cccEEEC
Confidence            9987   66    38999999999999975542     3468887

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2

>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10

Probab=99.79  E-value=1.7e-18  Score=131.38  Aligned_cols=106  Identities=15%  Similarity=0.156  Sum_probs=87.6

Q ss_pred             cceEEEEEEEEeeCCCCCCCCCcCCcEEEEEECCC-CcEEEeeeecCCCCCCeeeeEEEEEecC---CCcEEEEEEEeCC
Q 040360            8 GYRTIELTVLSGEDLRIDRRLIKKNAFAIVQTDTS-FDYCTTKVDESGGSHPSWNEKLVIELPM---HARFITVQVQCKS   83 (198)
Q Consensus         8 ~~~~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~-~~~~~T~v~~~~g~nP~WNE~f~f~v~~---~~~~L~~eV~~~~   83 (198)
                      ..+.|.|+|++|++|...+..+..||||+|.+.+. ..+++|++.+++ .||.|||+|.|.++.   ....|.|+|+|++
T Consensus        14 ~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~~~~kT~v~~~t-~nP~wne~f~f~i~~~~l~~~~l~~~V~d~d   92 (124)
T cd08385          14 QSNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKT-LNPVFNETFTFKVPYSELGNKTLVFSVYDFD   92 (124)
T ss_pred             CCCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCCCceecccCcCC-CCCceeeeEEEeCCHHHhCCCEEEEEEEeCC
Confidence            45789999999999987777788999999999753 356799999876 999999999999875   2468999999998


Q ss_pred             CCCCCCCCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEee
Q 040360           84 KSSSSGNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLR  126 (198)
Q Consensus        84 ~~~~~g~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~  126 (198)
                      .   ++    ++++||++.|+|+++..+..     ...||+|.
T Consensus        93 ~---~~----~~~~lG~~~i~l~~~~~~~~-----~~~W~~l~  123 (124)
T cd08385          93 R---FS----KHDLIGEVRVPLLTVDLGHV-----TEEWRDLE  123 (124)
T ss_pred             C---CC----CCceeEEEEEecCcccCCCC-----cceEEEcc
Confidence            7   55    38999999999999876432     34688874

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and

>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins

Probab=99.79  E-value=2e-18  Score=136.39  Aligned_cols=108  Identities=17%  Similarity=0.174  Sum_probs=87.6

Q ss_pred             ceEEEEEEEEeeCCCCC-CCCCcCCcEEEEEECCCC---cEEEeeeecCCCCCCeeeeEEEEEecCCCcEEEEEEEe-CC
Q 040360            9 YRTIELTVLSGEDLRID-RRLIKKNAFAIVQTDTSF---DYCTTKVDESGGSHPSWNEKLVIELPMHARFITVQVQC-KS   83 (198)
Q Consensus         9 ~~~LeVtVlsA~~L~~~-~~~~~~dpYvvv~~~~~~---~~~~T~v~~~~g~nP~WNE~f~f~v~~~~~~L~~eV~~-~~   83 (198)
                      .+.|+|+|++|++|... +..+..||||++.+.++.   .+.+|++++++ .||+|||+|.|.++.....|.|+||+ .+
T Consensus        28 ~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kkt-lnPvfNE~F~f~v~l~~~~L~v~V~~d~~  106 (146)
T cd04028          28 KGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIARKT-LDPLYQQQLVFDVSPTGKTLQVIVWGDYG  106 (146)
T ss_pred             CCEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecCCC-CCCccCCeEEEEEcCCCCEEEEEEEeCCC
Confidence            47899999999999764 345789999999997631   37899999887 99999999999998777899999994 55


Q ss_pred             CCCCCCCCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEeeCCC
Q 040360           84 KSSSSGNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRNAK  129 (198)
Q Consensus        84 ~~~~~g~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~~~  129 (198)
                      .   +.    ++++||++.|+|+++..+.     ....||.|....
T Consensus       107 ~---~~----~~~~iG~~~i~L~~l~~~~-----~~~~Wy~L~~~~  140 (146)
T cd04028         107 R---MD----KKVFMGVAQILLDDLDLSN-----LVIGWYKLFPTS  140 (146)
T ss_pred             C---CC----CCceEEEEEEEcccccCCC-----CceeEEecCCcc
Confidence            4   44    3889999999999985432     135799998643

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as

>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2

Probab=99.79  E-value=1.8e-18  Score=132.43  Aligned_cols=105  Identities=16%  Similarity=0.217  Sum_probs=86.0

Q ss_pred             cceEEEEEEEEeeCCCCCCCC-CcCCcEEEEEECCC---CcEEEeeeecCCCCCCeeeeEEEEEecC---CCcEEEEEEE
Q 040360            8 GYRTIELTVLSGEDLRIDRRL-IKKNAFAIVQTDTS---FDYCTTKVDESGGSHPSWNEKLVIELPM---HARFITVQVQ   80 (198)
Q Consensus         8 ~~~~LeVtVlsA~~L~~~~~~-~~~dpYvvv~~~~~---~~~~~T~v~~~~g~nP~WNE~f~f~v~~---~~~~L~~eV~   80 (198)
                      ..+.|.|+|++|+||...+.. +..||||+|.+.++   ..+++|++++++ .||+|||+|.|+++.   ....|.|+||
T Consensus        13 ~~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t-~nP~~nE~f~f~v~~~~l~~~~L~~~V~   91 (125)
T cd08393          13 KLRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKT-LNPVFNETLRYKVEREELPTRVLNLSVW   91 (125)
T ss_pred             CCCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcCC-CCCccCceEEEECCHHHhCCCEEEEEEE
Confidence            347899999999999876654 78999999999753   245799999987 999999999999974   3468999999


Q ss_pred             eCCCCCCCCCCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEe
Q 040360           81 CKSKSSSSGNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRL  125 (198)
Q Consensus        81 ~~~~~~~~g~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L  125 (198)
                      |.+.   ++    ++++||++.|+|.++.....     ...||.|
T Consensus        92 d~~~---~~----~~~~iG~~~i~L~~~~~~~~-----~~~W~~L  124 (125)
T cd08393          92 HRDS---LG----RNSFLGEVEVDLGSWDWSNT-----QPTWYPL  124 (125)
T ss_pred             eCCC---CC----CCcEeEEEEEecCccccCCC-----CcceEEC
Confidence            9887   66    38999999999999954421     3468876

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety

>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3)

Probab=99.78  E-value=2.2e-18  Score=136.28  Aligned_cols=104  Identities=21%  Similarity=0.242  Sum_probs=84.0

Q ss_pred             EEEEEEEEeeCCCCCCCCCcCCcEEEEEECCC---CcEEEeeeecCCCCCCeeeeEEEEEec-------------C---C
Q 040360           11 TIELTVLSGEDLRIDRRLIKKNAFAIVQTDTS---FDYCTTKVDESGGSHPSWNEKLVIELP-------------M---H   71 (198)
Q Consensus        11 ~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~---~~~~~T~v~~~~g~nP~WNE~f~f~v~-------------~---~   71 (198)
                      +|.|+|++|++|..  ..+..||||+|.+.++   .++.+|++++++ .||+|||+|.|++.             .   .
T Consensus         1 kL~V~Vi~ArnL~~--~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t-~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~   77 (148)
T cd04010           1 KLSVRVIECSDLAL--KNGTCDPYASVTLIYSNKKQDTKRTKVKKKT-NNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAE   77 (148)
T ss_pred             CEEEEEEeCcCCCC--CCCCCCceEEEEEeCCcccCcccCCccEeCC-CCCccceEEEEEEecccccccccccCCccccc
Confidence            48999999999986  5578999999999873   156789999886 99999999999984             1   1


Q ss_pred             CcEEEEEEEeCCCCCCCCCCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEeeCC
Q 040360           72 ARFITVQVQCKSKSSSSGNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRNA  128 (198)
Q Consensus        72 ~~~L~~eV~~~~~~~~~g~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~~  128 (198)
                      ...|.|+||+++.   .+    +|++||++.|+|.++..+..    ....||+|...
T Consensus        78 ~~~L~i~V~d~~~---~~----~ddfLG~v~i~l~~l~~~~~----~~~~W~~L~~~  123 (148)
T cd04010          78 KLELRVDLWHASM---GG----GDVFLGEVRIPLRGLDLQAG----SHQAWYFLQPR  123 (148)
T ss_pred             EEEEEEEEEcCCC---CC----CCceeEEEEEecccccccCC----cCcceeecCCc
Confidence            2579999999886   54    38999999999999986511    12469999764

RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain

>PLN03008 Phospholipase D delta

Probab=99.78  E-value=3.5e-18  Score=163.77  Aligned_cols=132  Identities=22%  Similarity=0.348  Sum_probs=108.0

Q ss_pred             CCCCCCCc----ceEEEEEEEEeeCCCCCC------------------------------------------CCCcCCcE
Q 040360            1 MLEKSSSG----YRTIELTVLSGEDLRIDR------------------------------------------RLIKKNAF   34 (198)
Q Consensus         1 ~~~~~~m~----~~~LeVtVlsA~~L~~~~------------------------------------------~~~~~dpY   34 (198)
                      |+++..+.    -|+|+|+|..|++|++.+                                          ..+++|||
T Consensus         1 ~~~~~~~~~~llhg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tSDPY   80 (868)
T PLN03008          1 MAEKVSEDVMLLHGDLDLKIVKARRLPNMDMFSEHLRRLFTACNACARPTDTDDVDPRDKGEFGDKNIRSHRKVITSDPY   80 (868)
T ss_pred             CccccccceEEeecccEEEEEEcccCCchhHHHHHHHhhcccccccccccccccccccccccccccccccccccCCCCce
Confidence            44554443    389999999999986300                                          02467999


Q ss_pred             EEEEECCCCcEEEeeeecCCCCCCeeeeEEEEEecCCCcEEEEEEEeCCCCCCCCCCCCCCceeEEEEEeCccccCCCCC
Q 040360           35 AIVQTDTSFDYCTTKVDESGGSHPSWNEKLVIELPMHARFITVQVQCKSKSSSSGNNNNHNKIVGFARIPVSDFIGGYAP  114 (198)
Q Consensus        35 vvv~~~~~~~~~~T~v~~~~g~nP~WNE~f~f~v~~~~~~L~~eV~~~~~~~~~g~~~~~d~~IG~a~IpL~~l~~~~~~  114 (198)
                      |+|.++. ....+|++.+++ .||+|||+|.|.+.+....|.|+|+|++.   ++     +++||++.|||.+|..|.. 
T Consensus        81 V~I~Lg~-~rv~RTrVi~n~-~NPvWNE~F~f~vah~~s~L~f~VkD~D~---~g-----aD~IG~a~IPL~~L~~Ge~-  149 (868)
T PLN03008         81 VTVVVPQ-ATLARTRVLKNS-QEPLWDEKFNISIAHPFAYLEFQVKDDDV---FG-----AQIIGTAKIPVRDIASGER-  149 (868)
T ss_pred             EEEEECC-cceeeEEeCCCC-CCCCcceeEEEEecCCCceEEEEEEcCCc---cC-----CceeEEEEEEHHHcCCCCc-
Confidence            9999987 456799999886 89999999999998877899999999998   78     7899999999999988742 


Q ss_pred             CCceEeEEEEeeCCCCC---ccEEEEEEEEEeeeCCc
Q 040360          115 ENYLHFLSYRLRNAKGD---KNGIINVSVRSLKVAAD  148 (198)
Q Consensus       115 ~~~~~~~sy~L~~~~Gk---~~G~I~lsi~~f~~~~~  148 (198)
                          ...|++|.+..|+   ..++|+|+++ |.+-..
T Consensus       150 ----vd~Wl~Ll~~~~kp~k~~~kl~v~lq-f~pv~~  181 (868)
T PLN03008        150 ----ISGWFPVLGASGKPPKAETAIFIDMK-FTPFDQ  181 (868)
T ss_pred             ----eEEEEEccccCCCCCCCCcEEEEEEE-EEEccc
Confidence                4579999998876   4579999999 987644

>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8

Probab=99.78  E-value=2.9e-18  Score=130.24  Aligned_cols=106  Identities=12%  Similarity=0.203  Sum_probs=88.7

Q ss_pred             cceEEEEEEEEeeCCCCCCCCCcCCcEEEEEECCC-CcEEEeeeecCCCCCCeeeeEEEEEecCC---CcEEEEEEEeCC
Q 040360            8 GYRTIELTVLSGEDLRIDRRLIKKNAFAIVQTDTS-FDYCTTKVDESGGSHPSWNEKLVIELPMH---ARFITVQVQCKS   83 (198)
Q Consensus         8 ~~~~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~-~~~~~T~v~~~~g~nP~WNE~f~f~v~~~---~~~L~~eV~~~~   83 (198)
                      ..+.|.|+|++|++|...+..+..||||+|.+.+. ...++|++.+++ .||+|||+|.|.++..   ...|.|+|+|++
T Consensus        14 ~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t-~~P~wne~f~f~v~~~~l~~~~l~i~V~d~~   92 (124)
T cd08387          14 DMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKT-LNPEFDESFVFEVPPQELPKRTLEVLLYDFD   92 (124)
T ss_pred             CCCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCCCcEeCceEcCC-CCCCcccEEEEeCCHHHhCCCEEEEEEEECC
Confidence            34789999999999987777788999999999542 457899999886 9999999999998753   468999999998


Q ss_pred             CCCCCCCCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEee
Q 040360           84 KSSSSGNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLR  126 (198)
Q Consensus        84 ~~~~~g~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~  126 (198)
                      .   ++    ++++||++.|+|.++..+.     ....||.|.
T Consensus        93 ~---~~----~~~~iG~~~i~l~~~~~~~-----~~~~W~~l~  123 (124)
T cd08387          93 Q---FS----RDECIGVVELPLAEVDLSE-----KLDLWRKIQ  123 (124)
T ss_pred             C---CC----CCceeEEEEEecccccCCC-----CcceEEECc
Confidence            7   65    3899999999999997553     135799885

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv

>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family

Probab=99.78  E-value=1.4e-18  Score=132.32  Aligned_cols=104  Identities=16%  Similarity=0.175  Sum_probs=83.7

Q ss_pred             ceEEEEEEEEeeCCCCCCCCCcCCcEEEEEECCC---CcEEEeeeecCCCCCCeeeeEEEEEecCC--CcEEEEEEEeCC
Q 040360            9 YRTIELTVLSGEDLRIDRRLIKKNAFAIVQTDTS---FDYCTTKVDESGGSHPSWNEKLVIELPMH--ARFITVQVQCKS   83 (198)
Q Consensus         9 ~~~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~---~~~~~T~v~~~~g~nP~WNE~f~f~v~~~--~~~L~~eV~~~~   83 (198)
                      .+.|+|+|++|+||...+ .+..||||+|.+.++   ..+.+|++.+++ .||+|||+|.|.++..  ...|.|+||+++
T Consensus        11 ~~~L~V~Vi~ar~L~~~~-~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t-~~P~~nE~F~f~v~~~~~~~~l~v~V~~~~   88 (119)
T cd08685          11 NRKLTLHVLEAKGLRSTN-SGTCNSYVKISLSPDKEVRFRQKTSTVPDS-ANPLFHETFSFDVNERDYQKRLLVTVWNKL   88 (119)
T ss_pred             CCEEEEEEEEEECCCCCC-CCCCCeeEEEEEEeCCCCcceEeCccccCC-CCCccccEEEEEcChHHhCCEEEEEEECCC
Confidence            478999999999998766 678999999999873   236689999886 9999999999999753  357889999987


Q ss_pred             CCCCCCCCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEe
Q 040360           84 KSSSSGNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRL  125 (198)
Q Consensus        84 ~~~~~g~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L  125 (198)
                      .   ...   ++++||.+.|||.++..+..     ...||.|
T Consensus        89 ~---~~~---~~~~lG~~~i~l~~~~~~~~-----~~~Wy~l  119 (119)
T cd08685          89 S---KSR---DSGLLGCMSFGVKSIVNQKE-----ISGWYYL  119 (119)
T ss_pred             C---CcC---CCEEEEEEEecHHHhccCcc-----ccceEeC
Confidence            6   321   27899999999999985432     2468876

This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho

>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP)

Probab=99.78  E-value=8.5e-18  Score=132.51  Aligned_cols=91  Identities=18%  Similarity=0.356  Sum_probs=82.1

Q ss_pred             eEEEEEEEEeeCCCCCCCCCcCCcEEEEEECCCCcEEEeeeecCCCCCCeeeeEEEEEecCCCcEEEEEEEeCCCCCCCC
Q 040360           10 RTIELTVLSGEDLRIDRRLIKKNAFAIVQTDTSFDYCTTKVDESGGSHPSWNEKLVIELPMHARFITVQVQCKSKSSSSG   89 (198)
Q Consensus        10 ~~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~~~~~~T~v~~~~g~nP~WNE~f~f~v~~~~~~L~~eV~~~~~~~~~g   89 (198)
                      |.|.|+|++|++|...+. +..||||++.++.  ++++|++.+++ .||+|||+|.|.++.....|.|+|||++.   ++
T Consensus         2 G~L~V~Vi~a~nL~~~d~-~~sDPYV~v~~g~--~~~kT~vvk~t-~nP~WnE~f~f~i~~~~~~l~~~V~D~d~---~~   74 (145)
T cd04038           2 GLLKVRVVRGTNLAVRDF-TSSDPYVVLTLGN--QKVKTRVIKKN-LNPVWNEELTLSVPNPMAPLKLEVFDKDT---FS   74 (145)
T ss_pred             eEEEEEEEeeECCCCCCC-CCcCcEEEEEECC--EEEEeeeEcCC-CCCeecccEEEEecCCCCEEEEEEEECCC---CC
Confidence            789999999999986665 7899999999988  88999999886 99999999999998777899999999987   66


Q ss_pred             CCCCCCceeEEEEEeCccccCC
Q 040360           90 NNNNHNKIVGFARIPVSDFIGG  111 (198)
Q Consensus        90 ~~~~~d~~IG~a~IpL~~l~~~  111 (198)
                      +    |++||.+.++|.++...
T Consensus        75 ~----dd~iG~a~i~l~~l~~~   92 (145)
T cd04038          75 K----DDSMGEAEIDLEPLVEA   92 (145)
T ss_pred             C----CCEEEEEEEEHHHhhhh
Confidence            3    89999999999998765

ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i

>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins

Probab=99.77  E-value=5.7e-18  Score=128.71  Aligned_cols=105  Identities=16%  Similarity=0.140  Sum_probs=86.6

Q ss_pred             ceEEEEEEEEeeCCCCCCCCCcCCcEEEEEECCC---CcEEEeeeecCCCCCCeeeeEEEEEecCC---CcEEEEEEEeC
Q 040360            9 YRTIELTVLSGEDLRIDRRLIKKNAFAIVQTDTS---FDYCTTKVDESGGSHPSWNEKLVIELPMH---ARFITVQVQCK   82 (198)
Q Consensus         9 ~~~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~---~~~~~T~v~~~~g~nP~WNE~f~f~v~~~---~~~L~~eV~~~   82 (198)
                      .+.|.|+|++|++|+..+..+..||||+|.+.++   ..+++|++.+++ .||+|||+|.|.++..   ...|.|+|+++
T Consensus        15 ~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~-~nP~wne~f~f~i~~~~l~~~~l~i~v~~~   93 (127)
T cd04030          15 RQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDN-LNPVFDETFEFPVSLEELKRRTLDVAVKNS   93 (127)
T ss_pred             CCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccCC-CCCEECeEEEEecCHHHhcCCEEEEEEEEC
Confidence            4789999999999988777789999999999752   357899999886 8999999999999653   46899999998


Q ss_pred             CCCCCC-CCCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEe
Q 040360           83 SKSSSS-GNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRL  125 (198)
Q Consensus        83 ~~~~~~-g~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L  125 (198)
                      +.  ++ +    ++++||++.|+|.++..+..     ...||.|
T Consensus        94 ~~--~~~~----~~~~iG~~~i~l~~l~~~~~-----~~~W~~L  126 (127)
T cd04030          94 KS--FLSR----EKKLLGQVLIDLSDLDLSKG-----FTQWYDL  126 (127)
T ss_pred             Cc--ccCC----CCceEEEEEEecccccccCC-----ccceEEC
Confidence            76  11 3    38999999999999865432     3468887

KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1

>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1)

Probab=99.77  E-value=1.8e-17  Score=129.57  Aligned_cols=121  Identities=18%  Similarity=0.298  Sum_probs=94.7

Q ss_pred             EEEEEEEEeeCCCCCCCCCcCCcEEEEEECCCC-----------cEEEeeeecCCCCCCee-eeEEEEEecCCCcEEEEE
Q 040360           11 TIELTVLSGEDLRIDRRLIKKNAFAIVQTDTSF-----------DYCTTKVDESGGSHPSW-NEKLVIELPMHARFITVQ   78 (198)
Q Consensus        11 ~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~~-----------~~~~T~v~~~~g~nP~W-NE~f~f~v~~~~~~L~~e   78 (198)
                      .+.|++++|++|+ .+.++++||||++.+.+..           ++++|++.+++ .||+| ||+|.|.+.. .+.|.|+
T Consensus         2 ~~~~~~~~A~~L~-~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~t-lnP~W~nE~f~f~v~~-~~~L~v~   78 (137)
T cd08691           2 SFSLSGLQARNLK-KGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENT-INPVWHREQFVFVGLP-TDVLEIE   78 (137)
T ss_pred             EEEEEEEEeCCCC-CccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCC-CCCceEceEEEEEcCC-CCEEEEE
Confidence            3578999999998 5668999999999996421           36899999886 99999 9999999965 4689999


Q ss_pred             EEeCCCCCCCCCCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEeeCCC--CCccEEEEEEE
Q 040360           79 VQCKSKSSSSGNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRNAK--GDKNGIINVSV  140 (198)
Q Consensus        79 V~~~~~~~~~g~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~~~--Gk~~G~I~lsi  140 (198)
                      |+|++.   .+. .+.+++||.+.|||+++..+....  ...++|+|...+  +..+|+|.|.+
T Consensus        79 V~D~~~---~~~-~~~~d~lG~~~i~l~~l~~~~~~~--~~~~~~~l~k~~~~s~v~G~~~l~~  136 (137)
T cd08691          79 VKDKFA---KSR-PIIRRFLGKLSIPVQRLLERHAIG--DQELSYTLGRRTPTDHVSGQLTFRF  136 (137)
T ss_pred             EEecCC---CCC-ccCCceEEEEEEEHHHhcccccCC--ceEEEEECCcCCCCCcEEEEEEEEe
Confidence            999754   221 011689999999999998775322  256789987643  46889998875

NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C

>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1)

Probab=99.77  E-value=1.1e-17  Score=133.33  Aligned_cols=123  Identities=16%  Similarity=0.202  Sum_probs=95.9

Q ss_pred             EEEEEEEEeeCC--CCCCCCCcCCcEEEEEEC-C-C-CcEEEeeeecCCCCCCeeeeEEEEEecCC---------CcEEE
Q 040360           11 TIELTVLSGEDL--RIDRRLIKKNAFAIVQTD-T-S-FDYCTTKVDESGGSHPSWNEKLVIELPMH---------ARFIT   76 (198)
Q Consensus        11 ~LeVtVlsA~~L--~~~~~~~~~dpYvvv~~~-~-~-~~~~~T~v~~~~g~nP~WNE~f~f~v~~~---------~~~L~   76 (198)
                      .++++|..|+++  ......+..||||++.+. + + .++.+|++.+++ .||+|||+|.|.++..         ...|.
T Consensus         3 ~~el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~T-lnPvfNE~f~f~I~~~~~~~~R~l~~~~L~   81 (155)
T cd08690           3 SIELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDT-NSPEYNESFKLNINRKHRSFQRVFKRHGLK   81 (155)
T ss_pred             ceEEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccCC-CCCcccceEEEEeccccchhhhhccCCcEE
Confidence            468888888885  444556789999999971 1 1 478999999987 9999999999999654         34699


Q ss_pred             EEEEeCCCCCCCCCCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEeeCCCCCccEEEEEEEEEeeeC
Q 040360           77 VQVQCKSKSSSSGNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRNAKGDKNGIINVSVRSLKVA  146 (198)
Q Consensus        77 ~eV~~~~~~~~~g~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~~~Gk~~G~I~lsi~~f~~~  146 (198)
                      |+|||++.  ++.    +|++||++.|+|..+.....     ...+++|.+.....-|.|++.+| +..+
T Consensus        82 ~~V~d~~~--f~~----~D~~iG~~~i~L~~l~~~~~-----~~~~~~L~~~~k~~Gg~l~v~ir-~r~p  139 (155)
T cd08690          82 FEVYHKGG--FLR----SDKLLGTAQVKLEPLETKCE-----IHESVDLMDGRKATGGKLEVKVR-LREP  139 (155)
T ss_pred             EEEEeCCC--ccc----CCCeeEEEEEEcccccccCc-----ceEEEEhhhCCCCcCCEEEEEEE-ecCC
Confidence            99999986  233    39999999999999965531     23599988644456789999999 7765

Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha

>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins

Probab=99.77  E-value=9e-18  Score=126.80  Aligned_cols=105  Identities=18%  Similarity=0.244  Sum_probs=85.7

Q ss_pred             cceEEEEEEEEeeCCCCCC-CCCcCCcEEEEEECCC---CcEEEeeeecCCCCCCeeeeEEEEEecCC---CcEEEEEEE
Q 040360            8 GYRTIELTVLSGEDLRIDR-RLIKKNAFAIVQTDTS---FDYCTTKVDESGGSHPSWNEKLVIELPMH---ARFITVQVQ   80 (198)
Q Consensus         8 ~~~~LeVtVlsA~~L~~~~-~~~~~dpYvvv~~~~~---~~~~~T~v~~~~g~nP~WNE~f~f~v~~~---~~~L~~eV~   80 (198)
                      ..+.|.|+|++|++|+..+ ..+..||||+|.+.+.   ..+.+|++.+++ .||+|||+|.|.++..   ...|.|+|+
T Consensus        12 ~~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t-~~P~wne~f~f~i~~~~l~~~~l~i~v~   90 (123)
T cd08521          12 KTGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNT-TNPVFNETLKYHISKSQLETRTLQLSVW   90 (123)
T ss_pred             CCCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccCCC-CCCcccceEEEeCCHHHhCCCEEEEEEE
Confidence            4578999999999998766 5678999999999642   146799998775 9999999999998752   468999999


Q ss_pred             eCCCCCCCCCCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEe
Q 040360           81 CKSKSSSSGNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRL  125 (198)
Q Consensus        81 ~~~~~~~~g~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L  125 (198)
                      |++.   .+    ++++||++.|+|.++..+..     ...||+|
T Consensus        91 d~~~---~~----~~~~iG~~~i~l~~l~~~~~-----~~~w~~l  123 (123)
T cd08521          91 HHDR---FG----RNTFLGEVEIPLDSWDLDSQ-----QSEWYPL  123 (123)
T ss_pred             eCCC---Cc----CCceeeEEEEecccccccCC-----CccEEEC
Confidence            9887   55    38999999999999964431     3568876

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into

>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs)

Probab=99.76  E-value=1.6e-17  Score=124.22  Aligned_cols=111  Identities=17%  Similarity=0.282  Sum_probs=83.5

Q ss_pred             EEEEEEEeeCCCCCCCCCcCCcEEEEEECCCCcEEEeeeecCCCCCCeeeeEEEEEecC---CCcEEEEEEEeCCCCCCC
Q 040360           12 IELTVLSGEDLRIDRRLIKKNAFAIVQTDTSFDYCTTKVDESGGSHPSWNEKLVIELPM---HARFITVQVQCKSKSSSS   88 (198)
Q Consensus        12 LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~~~~~~T~v~~~~g~nP~WNE~f~f~v~~---~~~~L~~eV~~~~~~~~~   88 (198)
                      |.|+|++|++|+..   +.+||||+|.+++ ...++|++.++  .||.|||+|.|.++.   ....|.|.+++.+.   .
T Consensus         2 L~v~vi~a~~l~~~---~~~dpyv~v~~~~-~~~~kT~~~~~--~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~---~   72 (117)
T cd08383           2 LRLRILEAKNLPSK---GTRDPYCTVSLDQ-VEVARTKTVEK--LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRS---K   72 (117)
T ss_pred             eEEEEEEecCCCcC---CCCCceEEEEECC-EEeEecceEEC--CCCcccceEEEecCCccccEEEEEEEEEeccc---C
Confidence            88999999999865   6899999999987 44579998876  899999999999977   34567888887654   3


Q ss_pred             CCCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEeeCCC--CCccEEEEEEEEEe
Q 040360           89 GNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRNAK--GDKNGIINVSVRSL  143 (198)
Q Consensus        89 g~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~~~--Gk~~G~I~lsi~~f  143 (198)
                      +      +.+|.++++|.++..+..     ...||+|...+  ++..|+|+|.++ |
T Consensus        73 ~------~~~~~g~v~l~~~~~~~~-----~~~w~~L~~~~~~~~~~G~l~l~~~-~  117 (117)
T cd08383          73 D------RDIVIGKVALSKLDLGQG-----KDEWFPLTPVDPDSEVQGSVRLRAR-Y  117 (117)
T ss_pred             C------CeeEEEEEEecCcCCCCc-----ceeEEECccCCCCCCcCceEEEEEE-C
Confidence            3      234455556655544321     34699997644  357999999998 5

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2

>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins

Probab=99.76  E-value=1e-17  Score=126.86  Aligned_cols=106  Identities=21%  Similarity=0.179  Sum_probs=85.3

Q ss_pred             CCcceEEEEEEEEeeCCCCCCCCCcCCcEEEEEECCC---CcEEEeeeecCCCCCCeeeeEEEEEecC----CCcEEEEE
Q 040360            6 SSGYRTIELTVLSGEDLRIDRRLIKKNAFAIVQTDTS---FDYCTTKVDESGGSHPSWNEKLVIELPM----HARFITVQ   78 (198)
Q Consensus         6 ~m~~~~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~---~~~~~T~v~~~~g~nP~WNE~f~f~v~~----~~~~L~~e   78 (198)
                      +...+.|.|+|++|++|...+..+..||||+|.+.+.   ..+++|++.+++ .||+|||+|.|.+..    ....|.|+
T Consensus        12 ~~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t-~nP~wne~f~f~~~~~~~l~~~~l~~~   90 (125)
T cd04031          12 DKVTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKT-LNPEWNQTFEYSNVRRETLKERTLEVT   90 (125)
T ss_pred             eCCCCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCCC-CCCccccEEEEcccCHHHhCCCEEEEE
Confidence            3445789999999999987777788999999999752   256789999887 999999999998643    34689999


Q ss_pred             EEeCCCCCCCCCCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEe
Q 040360           79 VQCKSKSSSSGNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRL  125 (198)
Q Consensus        79 V~~~~~~~~~g~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L  125 (198)
                      |+|++.   .+    ++++||++.++|++.....      ...||+|
T Consensus        91 V~d~~~---~~----~~~~iG~~~i~l~~~~~~~------~~~W~~L  124 (125)
T cd04031          91 VWDYDR---DG----ENDFLGEVVIDLADALLDD------EPHWYPL  124 (125)
T ss_pred             EEeCCC---CC----CCcEeeEEEEecccccccC------CcceEEC
Confidence            999887   55    3899999999999943221      1368887

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as

>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family

Probab=99.76  E-value=2.9e-17  Score=129.75  Aligned_cols=122  Identities=19%  Similarity=0.255  Sum_probs=95.8

Q ss_pred             ceEEEEEEEEeeCCCCCCCCCcCCcEEEEEECCCCcEEEeeeecCCCCCCeeeeEEEEEecCCCcEEEEEEEeCCCCCCC
Q 040360            9 YRTIELTVLSGEDLRIDRRLIKKNAFAIVQTDTSFDYCTTKVDESGGSHPSWNEKLVIELPMHARFITVQVQCKSKSSSS   88 (198)
Q Consensus         9 ~~~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~~~~~~T~v~~~~g~nP~WNE~f~f~v~~~~~~L~~eV~~~~~~~~~   88 (198)
                      ...|.|.|++|++|..     +.++||.|.+++ ....+|++..++ .||.|||.|.|........|+|.|+..+..  .
T Consensus        10 ~~sL~v~V~EAk~Lp~-----~~~~Y~~i~Ld~-~~vaRT~v~~~~-~nP~W~E~F~f~~~~~~~~l~v~v~k~~~~--~   80 (146)
T cd04013          10 ENSLKLWIIEAKGLPP-----KKRYYCELCLDK-TLYARTTSKLKT-DTLFWGEHFEFSNLPPVSVITVNLYRESDK--K   80 (146)
T ss_pred             EEEEEEEEEEccCCCC-----cCCceEEEEECC-EEEEEEEEEcCC-CCCcceeeEEecCCCcccEEEEEEEEccCc--c
Confidence            4679999999999964     348999999999 444699999886 899999999998766567899999865431  1


Q ss_pred             CCCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEeeCCCCCc----------cEEEEEEEEEeeeC
Q 040360           89 GNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRNAKGDK----------NGIINVSVRSLKVA  146 (198)
Q Consensus        89 g~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~~~Gk~----------~G~I~lsi~~f~~~  146 (198)
                      ++ ...+.+||.+.||+.++..+..     ...||+|...++++          .+.|+++++ |...
T Consensus        81 ~~-~~~~~~IG~V~Ip~~~l~~~~~-----ve~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~r-f~~~  141 (146)
T cd04013          81 KK-KDKSQLIGTVNIPVTDVSSRQF-----VEKWYPVSTPKGNGKSGGKEGKGESPSIRIKAR-YQST  141 (146)
T ss_pred             cc-ccCCcEEEEEEEEHHHhcCCCc-----ccEEEEeecCCCCCccccccccCCCCEEEEEEE-EEEe
Confidence            10 0128899999999999986642     34799999976553          368999999 8753

SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas

>cd08680 C2_Kibra C2 domain found in Human protein Kibra

Probab=99.76  E-value=9.8e-18  Score=128.85  Aligned_cols=105  Identities=17%  Similarity=0.163  Sum_probs=86.1

Q ss_pred             ceEEEEEEEEeeCCCCCCCCCcCCcEEEEEECCCC----cEEEeeeecCCCCCCeeeeEEEEEecC---CCcEEEEEEEe
Q 040360            9 YRTIELTVLSGEDLRIDRRLIKKNAFAIVQTDTSF----DYCTTKVDESGGSHPSWNEKLVIELPM---HARFITVQVQC   81 (198)
Q Consensus         9 ~~~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~~----~~~~T~v~~~~g~nP~WNE~f~f~v~~---~~~~L~~eV~~   81 (198)
                      .+.|.|+|++|+||+..+..+..||||++.+-++.    .+++|++.+++ .||+|||+|.|+++.   ....|.|.|++
T Consensus        13 ~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t-~nPvfnE~F~f~v~~~~L~~~~L~~~V~~   91 (124)
T cd08680          13 DSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQ-DKPVFNEVFRVPISSTKLYQKTLQVDVCS   91 (124)
T ss_pred             CCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCC-CCCccccEEEEECCHHHhhcCEEEEEEEe
Confidence            46899999999999876666789999999998752    37899999886 999999999999976   35799999999


Q ss_pred             CCCCCCCCCCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEe
Q 040360           82 KSKSSSSGNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRL  125 (198)
Q Consensus        82 ~~~~~~~g~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L  125 (198)
                      .+.   ++    ++++||++.|+|.++.....    ....||.|
T Consensus        92 ~~~---~~----~~~~lG~~~i~L~~~~~~~~----~~~~Wy~l  124 (124)
T cd08680          92 VGP---DQ----QEECLGGAQISLADFESSEE----MSTKWYNL  124 (124)
T ss_pred             CCC---CC----ceeEEEEEEEEhhhccCCCc----cccccccC
Confidence            887   55    38999999999999944321    13457765

Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom

>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7

Probab=99.75  E-value=2.7e-17  Score=124.79  Aligned_cols=106  Identities=20%  Similarity=0.237  Sum_probs=86.3

Q ss_pred             cceEEEEEEEEeeCCCCCCCCCcCCcEEEEEECCC-CcEEEeeeecCCCCCCeeeeEEEEEe-cC---CCcEEEEEEEeC
Q 040360            8 GYRTIELTVLSGEDLRIDRRLIKKNAFAIVQTDTS-FDYCTTKVDESGGSHPSWNEKLVIEL-PM---HARFITVQVQCK   82 (198)
Q Consensus         8 ~~~~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~-~~~~~T~v~~~~g~nP~WNE~f~f~v-~~---~~~~L~~eV~~~   82 (198)
                      ..++|.|+|++|++|+..+..+..||||+|.+.+. ..+.+|++.+++ .||.|||+|.|.+ +.   ....|.|+|+|+
T Consensus        14 ~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~kT~v~~~t-~~P~Wne~f~f~~~~~~~l~~~~l~~~v~d~   92 (125)
T cd08386          14 QESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKN-LNPHWNETFLFEGFPYEKLQQRVLYLQVLDY   92 (125)
T ss_pred             CCCEEEEEEEEecCCCCccCCCCCCceEEEEECCCCCcceeeeeecCC-CCCccceeEEEcccCHHHhCCCEEEEEEEeC
Confidence            45789999999999987777788999999999532 467899999886 9999999999984 32   235799999999


Q ss_pred             CCCCCCCCCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEee
Q 040360           83 SKSSSSGNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLR  126 (198)
Q Consensus        83 ~~~~~~g~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~  126 (198)
                      +.   ++    ++++||++.|+|+++..+..     ...||.|.
T Consensus        93 d~---~~----~~~~iG~~~i~l~~l~~~~~-----~~~W~~l~  124 (125)
T cd08386          93 DR---FS----RNDPIGEVSLPLNKVDLTEE-----QTFWKDLK  124 (125)
T ss_pred             CC---Cc----CCcEeeEEEEecccccCCCC-----cceEEecC
Confidence            87   65    38999999999999975431     35788874

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves

>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11

Probab=99.75  E-value=3e-17  Score=126.30  Aligned_cols=96  Identities=11%  Similarity=0.150  Sum_probs=79.4

Q ss_pred             cceEEEEEEEEeeCCCCCCCC-CcCCcEEEEEECCC-CcEEEeeeecCCCCCCeeeeEEEE-EecC---CCcEEEEEEEe
Q 040360            8 GYRTIELTVLSGEDLRIDRRL-IKKNAFAIVQTDTS-FDYCTTKVDESGGSHPSWNEKLVI-ELPM---HARFITVQVQC   81 (198)
Q Consensus         8 ~~~~LeVtVlsA~~L~~~~~~-~~~dpYvvv~~~~~-~~~~~T~v~~~~g~nP~WNE~f~f-~v~~---~~~~L~~eV~~   81 (198)
                      ....|.|+|++|++|+..+.. +..||||+|.+.+. .++.+|++++++ .||+|||+|.| .++.   ....|.|+|+|
T Consensus        14 ~~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~t-~nP~wnE~F~f~~~~~~~~~~~~L~~~V~d   92 (128)
T cd08388          14 EKKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKT-RNPVYDETFTFYGIPYNQLQDLSLHFAVLS   92 (128)
T ss_pred             CCCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceeeccEEcCC-CCCceeeEEEEcccCHHHhCCCEEEEEEEE
Confidence            347899999999999876655 78999999999753 356799999886 99999999999 4553   23579999999


Q ss_pred             CCCCCCCCCCCCCCceeEEEEEeCccccCC
Q 040360           82 KSKSSSSGNNNNHNKIVGFARIPVSDFIGG  111 (198)
Q Consensus        82 ~~~~~~~g~~~~~d~~IG~a~IpL~~l~~~  111 (198)
                      ++.   ++    +|++||++.|+|+++.-.
T Consensus        93 ~d~---~~----~d~~lG~~~i~L~~l~~~  115 (128)
T cd08388          93 FDR---YS----RDDVIGEVVCPLAGADLL  115 (128)
T ss_pred             cCC---CC----CCceeEEEEEeccccCCC
Confidence            887   55    399999999999998644

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence

>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16

Probab=99.75  E-value=1.6e-17  Score=127.07  Aligned_cols=105  Identities=15%  Similarity=0.160  Sum_probs=85.9

Q ss_pred             cceEEEEEEEEeeCCCCCCCCCcCCcEEEEEECCC-CcEEEeeeecCCCCCCeeeeEEEEE-ecC---CCcEEEEEEEeC
Q 040360            8 GYRTIELTVLSGEDLRIDRRLIKKNAFAIVQTDTS-FDYCTTKVDESGGSHPSWNEKLVIE-LPM---HARFITVQVQCK   82 (198)
Q Consensus         8 ~~~~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~-~~~~~T~v~~~~g~nP~WNE~f~f~-v~~---~~~~L~~eV~~~   82 (198)
                      ..+.|.|+|++|+||...+..+..||||.+.+.++ .++.+|+++++  .||+|||+|.|+ ++.   ....|.|+|+++
T Consensus        14 ~~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~~~~kTkv~~~--~nP~fnE~F~f~~i~~~~l~~~~L~~~V~~~   91 (124)
T cd08389          14 SARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKKQRAKTKVQRG--PNPVFNETFTFSRVEPEELNNMALRFRLYGV   91 (124)
T ss_pred             CCCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCCcceeecccccC--CCCcccCEEEECCCCHHHhccCEEEEEEEEC
Confidence            45789999999999987776778899999888664 46788998764  899999999998 654   357899999999


Q ss_pred             CCCCCCCCCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEee
Q 040360           83 SKSSSSGNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLR  126 (198)
Q Consensus        83 ~~~~~~g~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~  126 (198)
                      +.   ++    ++++||++.|+|+++..+.     ....||.|.
T Consensus        92 ~~---~~----~~~~lG~~~i~L~~l~~~~-----~~~~w~~L~  123 (124)
T cd08389          92 ER---MR----KERLIGEKVVPLSQLNLEG-----ETTVWLTLE  123 (124)
T ss_pred             CC---cc----cCceEEEEEEeccccCCCC-----CceEEEeCC
Confidence            87   66    3899999999999996543     245788874

Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle

>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17

Probab=99.74  E-value=3.3e-17  Score=123.85  Aligned_cols=106  Identities=14%  Similarity=0.204  Sum_probs=86.9

Q ss_pred             cceEEEEEEEEeeCCCCCC-CCCcCCcEEEEEECCC-CcEEEeeeecCCCCCCeeeeEEEEEecCC---CcEEEEEEEeC
Q 040360            8 GYRTIELTVLSGEDLRIDR-RLIKKNAFAIVQTDTS-FDYCTTKVDESGGSHPSWNEKLVIELPMH---ARFITVQVQCK   82 (198)
Q Consensus         8 ~~~~LeVtVlsA~~L~~~~-~~~~~dpYvvv~~~~~-~~~~~T~v~~~~g~nP~WNE~f~f~v~~~---~~~L~~eV~~~   82 (198)
                      ..+.|.|+|++|++|+..+ ..+..||||+|.+.++ ....+|++.+++ .||+|||+|.|+++..   ...|.|+|||+
T Consensus        12 ~~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~v~~~~-~~P~wne~f~f~i~~~~l~~~~l~i~v~d~   90 (123)
T cd08390          12 EEEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKT-QNPNFDETFVFQVSFKELQRRTLRLSVYDV   90 (123)
T ss_pred             CCCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCCceEeeeEcCC-CCCccceEEEEEcCHHHhcccEEEEEEEEC
Confidence            4578999999999998766 5778999999999542 356789999886 9999999999999753   46899999998


Q ss_pred             CCCCCCCCCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEee
Q 040360           83 SKSSSSGNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLR  126 (198)
Q Consensus        83 ~~~~~~g~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~  126 (198)
                      +.   .+    ++++||++.|+|.++.....     ...|++|.
T Consensus        91 ~~---~~----~~~~iG~~~i~L~~l~~~~~-----~~~w~~L~  122 (123)
T cd08390          91 DR---FS----RHCIIGHVLFPLKDLDLVKG-----GVVWRDLE  122 (123)
T ss_pred             Cc---CC----CCcEEEEEEEeccceecCCC-----ceEEEeCC
Confidence            87   55    38999999999999976531     34788874

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat

>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin

Probab=99.74  E-value=2.3e-17  Score=130.89  Aligned_cols=106  Identities=18%  Similarity=0.200  Sum_probs=84.9

Q ss_pred             EEEEEEEEeeCCCCCCCC--------------CcCCcEEEEEECCCCcEEEeeeecCCCCCCeeeeEEEEEec--CCCcE
Q 040360           11 TIELTVLSGEDLRIDRRL--------------IKKNAFAIVQTDTSFDYCTTKVDESGGSHPSWNEKLVIELP--MHARF   74 (198)
Q Consensus        11 ~LeVtVlsA~~L~~~~~~--------------~~~dpYvvv~~~~~~~~~~T~v~~~~g~nP~WNE~f~f~v~--~~~~~   74 (198)
                      +|.|+|++|+||+..+..              +..||||+|.+++  ++.+|++++++ .||+|||+|.|++.  .....
T Consensus         1 ~~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g--~~~kT~v~~~t-~nPvWNE~f~f~v~~p~~~~~   77 (151)
T cd04018           1 RFIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAG--QKVKTSVKKNS-YNPEWNEQIVFPEMFPPLCER   77 (151)
T ss_pred             CeEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECC--EeeecceEcCC-CCCCcceEEEEEeeCCCcCCE
Confidence            489999999999865533              3689999999998  78899999986 99999999999864  33569


Q ss_pred             EEEEEEeCCCCCCCCCCCCCCceeEEEEEeCccccCCCCCCC---ceEeEEEEeeC
Q 040360           75 ITVQVQCKSKSSSSGNNNNHNKIVGFARIPVSDFIGGYAPEN---YLHFLSYRLRN  127 (198)
Q Consensus        75 L~~eV~~~~~~~~~g~~~~~d~~IG~a~IpL~~l~~~~~~~~---~~~~~sy~L~~  127 (198)
                      |.|+|+|++.   .+    +|++||.+.|+|.++..... +.   .....||.|.+
T Consensus        78 l~~~v~D~d~---~~----~dd~iG~~~l~l~~l~~~~~-~~~lp~~~p~W~~lyg  125 (151)
T cd04018          78 IKIQIRDWDR---VG----NDDVIGTHFIDLSKISNSGD-EGFLPTFGPSFVNLYG  125 (151)
T ss_pred             EEEEEEECCC---CC----CCCEEEEEEEeHHHhccCCc-cccCCccCceEEEeec
Confidence            9999999987   55    39999999999999876541 11   12346888864

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins

Probab=99.74  E-value=2.9e-17  Score=123.11  Aligned_cols=102  Identities=20%  Similarity=0.243  Sum_probs=83.6

Q ss_pred             CCCCcCCcEEEEEECCCCcEEEeeeecCCCCCCeeeeEEEEEecCC-CcEEEEEEEeCCCCCCCCCCCCCCceeEEEEEe
Q 040360           26 RRLIKKNAFAIVQTDTSFDYCTTKVDESGGSHPSWNEKLVIELPMH-ARFITVQVQCKSKSSSSGNNNNHNKIVGFARIP  104 (198)
Q Consensus        26 ~~~~~~dpYvvv~~~~~~~~~~T~v~~~~g~nP~WNE~f~f~v~~~-~~~L~~eV~~~~~~~~~g~~~~~d~~IG~a~Ip  104 (198)
                      ...|++||||+|.+++ ....+|++++++ .||+|||.|.|.+.+. .+.|.|+|++++.   ++     |++||++.|+
T Consensus         8 ~~~G~~dPYv~v~v~~-~~~~kT~v~~~t-~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~---~~-----d~~iG~~~v~   77 (111)
T cd04052           8 SKTGLLSPYAELYLNG-KLVYTTRVKKKT-NNPSWNASTEFLVTDRRKSRVTVVVKDDRD---RH-----DPVLGSVSIS   77 (111)
T ss_pred             ccCCCCCceEEEEECC-EEEEEEeeeccC-CCCccCCceEEEecCcCCCEEEEEEEECCC---CC-----CCeEEEEEec
Confidence            3568899999999987 346799998775 9999999999999763 5789999999887   55     9999999999


Q ss_pred             CccccCCCCCCCceEeEEEEeeCCCCCccEEEEEEEEEeee
Q 040360          105 VSDFIGGYAPENYLHFLSYRLRNAKGDKNGIINVSVRSLKV  145 (198)
Q Consensus       105 L~~l~~~~~~~~~~~~~sy~L~~~~Gk~~G~I~lsi~~f~~  145 (198)
                      |+++.....    ....||.|.+   ++.|+|++++. |.+
T Consensus        78 L~~l~~~~~----~~~~w~~L~~---~~~G~i~~~~~-~~p  110 (111)
T cd04052          78 LNDLIDATS----VGQQWFPLSG---NGQGRIRISAL-WKP  110 (111)
T ss_pred             HHHHHhhhh----ccceeEECCC---CCCCEEEEEEE-Eec
Confidence            999975421    1247999863   67899999999 764

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd04032 C2_Perforin C2 domain of Perforin

Probab=99.74  E-value=2.6e-17  Score=127.13  Aligned_cols=91  Identities=15%  Similarity=0.190  Sum_probs=77.8

Q ss_pred             cceEEEEEEEEeeCCCCCCCCCcCCcEEEEEECCCCcEEEeeeecCCCCCCeeeeEEEEEe-c-CCCcEEEEEEEeCCCC
Q 040360            8 GYRTIELTVLSGEDLRIDRRLIKKNAFAIVQTDTSFDYCTTKVDESGGSHPSWNEKLVIEL-P-MHARFITVQVQCKSKS   85 (198)
Q Consensus         8 ~~~~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~~~~~~T~v~~~~g~nP~WNE~f~f~v-~-~~~~~L~~eV~~~~~~   85 (198)
                      ..++|+|+|++|++|+. +..+..||||+|.+++  ++++|++.+++ .||+|||+|.|.+ . .....|.|+|||++. 
T Consensus        26 ~~~~L~V~V~~A~~L~~-d~~g~~DPYVkV~~~~--~~~kT~vi~~t-~nPvWNE~F~f~~~~~~~~~~L~v~V~D~d~-  100 (127)
T cd04032          26 GLATLTVTVLRATGLWG-DYFTSTDGYVKVFFGG--QEKRTEVIWNN-NNPRWNATFDFGSVELSPGGKLRFEVWDRDN-  100 (127)
T ss_pred             CcEEEEEEEEECCCCCc-CcCCCCCeEEEEEECC--ccccCceecCC-CCCcCCCEEEEecccCCCCCEEEEEEEeCCC-
Confidence            34799999999999984 5567899999999988  68899999886 9999999999974 2 235799999999987 


Q ss_pred             CCCCCCCCCCceeEEEEEeCcccc
Q 040360           86 SSSGNNNNHNKIVGFARIPVSDFI  109 (198)
Q Consensus        86 ~~~g~~~~~d~~IG~a~IpL~~l~  109 (198)
                        +++    |++||++.++|....
T Consensus       101 --~s~----dd~IG~~~i~l~~~~  118 (127)
T cd04032         101 --GWD----DDLLGTCSVVPEAGV  118 (127)
T ss_pred             --CCC----CCeeEEEEEEecCCc
Confidence              653    999999999998554

Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few

>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins

Probab=99.72  E-value=4.9e-17  Score=125.52  Aligned_cols=95  Identities=18%  Similarity=0.234  Sum_probs=81.3

Q ss_pred             ceEEEEEEEEeeCCCCCCCCCcCCcEEEEEECCC-----CcEEEeeeecCCCCCCeeeeEEEEEecCC-----CcEEEEE
Q 040360            9 YRTIELTVLSGEDLRIDRRLIKKNAFAIVQTDTS-----FDYCTTKVDESGGSHPSWNEKLVIELPMH-----ARFITVQ   78 (198)
Q Consensus         9 ~~~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~-----~~~~~T~v~~~~g~nP~WNE~f~f~v~~~-----~~~L~~e   78 (198)
                      .+.|.|+|++|++|+..+..+..||||+|.+.+.     ..+++|++.+++ .||+|||+|.|.+...     ...|.|+
T Consensus        15 ~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t-~nP~wnE~f~f~i~~~~~~~~~~~l~~~   93 (133)
T cd04009          15 EQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKT-LFPLFDESFEFNVPPEQCSVEGALLLFT   93 (133)
T ss_pred             CCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcCC-CCCccCCEEEEEechhhcccCCCEEEEE
Confidence            4789999999999987777788999999999742     247899999887 9999999999998652     4589999


Q ss_pred             EEeCCCCCCCCCCCCCCceeEEEEEeCccccCC
Q 040360           79 VQCKSKSSSSGNNNNHNKIVGFARIPVSDFIGG  111 (198)
Q Consensus        79 V~~~~~~~~~g~~~~~d~~IG~a~IpL~~l~~~  111 (198)
                      |||++.   ++    ++++||++.|+|.++...
T Consensus        94 V~d~d~---~~----~d~~iG~~~i~l~~l~~~  119 (133)
T cd04009          94 VKDYDL---LG----SNDFEGEAFLPLNDIPGV  119 (133)
T ss_pred             EEecCC---CC----CCcEeEEEEEeHHHCCcc
Confidence            999987   56    389999999999999854

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s

>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs)

Probab=99.72  E-value=8.8e-17  Score=125.20  Aligned_cols=104  Identities=24%  Similarity=0.302  Sum_probs=85.7

Q ss_pred             EEEEEEEeeCCCCCCCCCcCCcEEEEEECCC--CcEEEeeeecCCCCCCeeeeEEEEEecCC----------------Cc
Q 040360           12 IELTVLSGEDLRIDRRLIKKNAFAIVQTDTS--FDYCTTKVDESGGSHPSWNEKLVIELPMH----------------AR   73 (198)
Q Consensus        12 LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~--~~~~~T~v~~~~g~nP~WNE~f~f~v~~~----------------~~   73 (198)
                      |.|+|++|++|+.. ..+..||||+|.++.+  ..+++|++++++ .||.|||+|.|.+...                ..
T Consensus         1 L~V~Vi~A~~L~~~-~~g~~dPyv~v~~~~~~~~~~~rT~vv~~t-~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~   78 (137)
T cd08675           1 LSVRVLECRDLALK-SNGTCDPFARVTLNYSSKTDTKRTKVKKKT-NNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKS   78 (137)
T ss_pred             CEEEEEEccCCCcc-cCCCCCcEEEEEEecCCcCCeeccceeeCC-CCCCcceEEEEEcccccccccccccccccccccc
Confidence            68999999999876 6788999999999832  367899999886 9999999999998653                45


Q ss_pred             EEEEEEEeCCCCCCCCCCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEeeCCC
Q 040360           74 FITVQVQCKSKSSSSGNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRNAK  129 (198)
Q Consensus        74 ~L~~eV~~~~~~~~~g~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~~~  129 (198)
                      .|.|+|+|++.   .+    ++++||++.|+|.++.....     ...||.|....
T Consensus        79 ~l~i~V~d~~~---~~----~~~~IG~~~i~l~~l~~~~~-----~~~W~~L~~~~  122 (137)
T cd08675          79 ELRVELWHASM---VS----GDDFLGEVRIPLQGLQQAGS-----HQAWYFLQPRE  122 (137)
T ss_pred             EEEEEEEcCCc---Cc----CCcEEEEEEEehhhccCCCc-----ccceEecCCcC
Confidence            89999999887   55    39999999999999875432     34699988743

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin

>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4

Probab=99.71  E-value=8.5e-17  Score=128.79  Aligned_cols=109  Identities=13%  Similarity=0.044  Sum_probs=87.2

Q ss_pred             CCcceEEEEEEEEeeCCCCCCCCCcCCcEEEEEECCC---CcEEEeeeecCCCCCCeeeeEEEEEec-C---CCcEEEEE
Q 040360            6 SSGYRTIELTVLSGEDLRIDRRLIKKNAFAIVQTDTS---FDYCTTKVDESGGSHPSWNEKLVIELP-M---HARFITVQ   78 (198)
Q Consensus         6 ~m~~~~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~---~~~~~T~v~~~~g~nP~WNE~f~f~v~-~---~~~~L~~e   78 (198)
                      ....+.|.|+|++|++|+..+..+..||||+|.+.++   ..+++|++++++ .||.|||+|.|.+. .   ....|.|+
T Consensus        23 ~~~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t-~nP~WnE~f~f~~~~~~~l~~~~L~i~  101 (162)
T cd04020          23 KPSTGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKS-VNPVWNHTFVYDGVSPEDLSQACLELT  101 (162)
T ss_pred             CCCCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCCC-CCCCCCCEEEEecCCHHHhCCCEEEEE
Confidence            3466899999999999987777788999999998542   357899999887 99999999999853 2   23589999


Q ss_pred             EEeCCCCCCCCCCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEeeC
Q 040360           79 VQCKSKSSSSGNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRN  127 (198)
Q Consensus        79 V~~~~~~~~~g~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~  127 (198)
                      |||++.   ++    ++++||++.|++.++.....     ...||.|+.
T Consensus       102 V~d~d~---~~----~d~~lG~v~i~l~~~~~~~~-----~~~w~~~~~  138 (162)
T cd04020         102 VWDHDK---LS----SNDFLGGVRLGLGTGKSYGQ-----AVDWMDSTG  138 (162)
T ss_pred             EEeCCC---CC----CCceEEEEEEeCCccccCCC-----ccccccCCh
Confidence            999987   56    38999999999999864321     235776654

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin

>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin

Probab=99.71  E-value=2.1e-17  Score=126.27  Aligned_cols=111  Identities=15%  Similarity=0.191  Sum_probs=88.8

Q ss_pred             CCcceEEEEEEEEeeCCCCCCCCCcCCcEEEEEECCC---CcEEEeeeecCCCCCCeeeeEEEEEecCC---CcEEEEEE
Q 040360            6 SSGYRTIELTVLSGEDLRIDRRLIKKNAFAIVQTDTS---FDYCTTKVDESGGSHPSWNEKLVIELPMH---ARFITVQV   79 (198)
Q Consensus         6 ~m~~~~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~---~~~~~T~v~~~~g~nP~WNE~f~f~v~~~---~~~L~~eV   79 (198)
                      .+..+.|+|+|++|++|+..+..+..||||++.+.+.   ..+++|++.+++ .||.|||+|.|.++..   ...|.|+|
T Consensus        10 ~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~-~~P~wne~f~f~i~~~~l~~~~l~~~v   88 (134)
T cd00276          10 LPTAERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGT-LNPVFNEAFSFDVPAEQLEEVSLVITV   88 (134)
T ss_pred             eCCCCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCcceecC-CCCeeeeeEEEECCHHHhCCcEEEEEE
Confidence            4456899999999999987777788999999999763   135689988875 8999999999999764   47899999


Q ss_pred             EeCCCCCCCCCCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEeeCCCCC
Q 040360           80 QCKSKSSSSGNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRNAKGD  131 (198)
Q Consensus        80 ~~~~~~~~~g~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~~~Gk  131 (198)
                      +|++.   .+    ++++||.+.|+|.+  .+..     ...||+|.+..++
T Consensus        89 ~d~~~---~~----~~~~lG~~~i~l~~--~~~~-----~~~W~~l~~~~~~  126 (134)
T cd00276          89 VDKDS---VG----RNEVIGQVVLGPDS--GGEE-----LEHWNEMLASPRK  126 (134)
T ss_pred             EecCC---CC----CCceeEEEEECCCC--CCcH-----HHHHHHHHhCCCC
Confidence            99887   45    38999999999999  2221     2358888765444

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin

>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins

Probab=99.71  E-value=1.3e-16  Score=126.92  Aligned_cols=105  Identities=14%  Similarity=0.213  Sum_probs=86.1

Q ss_pred             CCCCCcceEEEEEEEEeeCCCCCCCCCcCCcEEEEEECCCC---------------------------cEEEeeeecCCC
Q 040360            3 EKSSSGYRTIELTVLSGEDLRIDRRLIKKNAFAIVQTDTSF---------------------------DYCTTKVDESGG   55 (198)
Q Consensus         3 ~~~~m~~~~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~~---------------------------~~~~T~v~~~~g   55 (198)
                      +++.+....|.|+|++|++|...+..+.+||||+|.+.+..                           ..++|++.+++ 
T Consensus        21 ~~~~~~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~t-   99 (153)
T cd08676          21 REAEPPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQT-   99 (153)
T ss_pred             HhcCCCeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCC-
Confidence            46777889999999999999887888899999999997421                           23689998886 


Q ss_pred             CCCeeeeEEEEEecC-CCcEEEEEEEeCCCCCCCCCCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEe
Q 040360           56 SHPSWNEKLVIELPM-HARFITVQVQCKSKSSSSGNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRL  125 (198)
Q Consensus        56 ~nP~WNE~f~f~v~~-~~~~L~~eV~~~~~~~~~g~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L  125 (198)
                      .||.|||+|.|.+.. ....|.|+|||++           +++||.+.|+|+++....      ...||+|
T Consensus       100 lnP~WnE~F~f~v~~~~~~~L~i~V~D~d-----------d~~IG~v~i~l~~l~~~~------~d~W~~L  153 (153)
T cd08676         100 LNPVWNETFRFEVEDVSNDQLHLDIWDHD-----------DDFLGCVNIPLKDLPSCG------LDSWFKL  153 (153)
T ss_pred             CCCccccEEEEEeccCCCCEEEEEEEecC-----------CCeEEEEEEEHHHhCCCC------CCCeEeC
Confidence            999999999999965 3578999999853           569999999999998432      1358876

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy

>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma

Probab=99.70  E-value=1.8e-16  Score=121.52  Aligned_cols=105  Identities=18%  Similarity=0.168  Sum_probs=87.9

Q ss_pred             eEEEEEEEEeeCCCCCCCCCcCCcEEEEEECCC---CcEEEeeeecCCCCCCeeeeEEEEEecCC--CcEEEEEEEeCCC
Q 040360           10 RTIELTVLSGEDLRIDRRLIKKNAFAIVQTDTS---FDYCTTKVDESGGSHPSWNEKLVIELPMH--ARFITVQVQCKSK   84 (198)
Q Consensus        10 ~~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~---~~~~~T~v~~~~g~nP~WNE~f~f~v~~~--~~~L~~eV~~~~~   84 (198)
                      +.|.|+|++|++|+..+..+..||||+|.+.+.   ...++|++.+++ .||.|||+|.|.+...  ...|.|+|||++.
T Consensus        13 ~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~-~~P~wne~f~~~~~~~~~~~~l~v~v~d~~~   91 (131)
T cd04026          13 NKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKT-LNPVWNETFTFDLKPADKDRRLSIEVWDWDR   91 (131)
T ss_pred             CEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecCC-CCCCccceEEEeCCchhcCCEEEEEEEECCC
Confidence            789999999999987666778999999999742   357899998886 9999999999998753  4689999999886


Q ss_pred             CCCCCCCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEeeCC
Q 040360           85 SSSSGNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRNA  128 (198)
Q Consensus        85 ~~~~g~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~~  128 (198)
                         .+    ++++||.+.++|+++....      ...||+|.+.
T Consensus        92 ---~~----~~~~iG~~~~~l~~l~~~~------~~~w~~L~~~  122 (131)
T cd04026          92 ---TT----RNDFMGSLSFGVSELIKMP------VDGWYKLLNQ  122 (131)
T ss_pred             ---CC----CcceeEEEEEeHHHhCcCc------cCceEECcCc
Confidence               55    3899999999999998541      3469999874

A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd

>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4

Probab=99.70  E-value=7.6e-17  Score=124.67  Aligned_cols=113  Identities=14%  Similarity=0.105  Sum_probs=89.0

Q ss_pred             cceEEEEEEEEeeCCCCCCCCCcCCcEEEEEECCCC---cEEEeeeecCCCCCCeeeeEEEEEecC---CCcEEEEEEEe
Q 040360            8 GYRTIELTVLSGEDLRIDRRLIKKNAFAIVQTDTSF---DYCTTKVDESGGSHPSWNEKLVIELPM---HARFITVQVQC   81 (198)
Q Consensus         8 ~~~~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~~---~~~~T~v~~~~g~nP~WNE~f~f~v~~---~~~~L~~eV~~   81 (198)
                      ..+.|.|+|++|++|...+..+..||||++.+.+..   .+.+|++.+++ .||.|||+|.|.++.   ....|.|+|+|
T Consensus        13 ~~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t-~nP~w~e~F~f~v~~~~~~~~~l~~~v~d   91 (136)
T cd08404          13 TTNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCT-LNPVFNESFVFDIPSEELEDISVEFLVLD   91 (136)
T ss_pred             CCCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCccccCC-CCCccCceEEEECCHHHhCCCEEEEEEEE
Confidence            357899999999999877778899999999996521   35688888876 999999999999975   34579999999


Q ss_pred             CCCCCCCCCCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEeeCCCCCccEE
Q 040360           82 KSKSSSSGNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRNAKGDKNGI  135 (198)
Q Consensus        82 ~~~~~~~g~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~~~Gk~~G~  135 (198)
                      ++.   ++    ++++||++.|++.+ . +.  +   ...|+.|.+..|++.+.
T Consensus        92 ~d~---~~----~~~~iG~~~~~~~~-~-~~--~---~~~w~~l~~~~~~~i~~  131 (136)
T cd08404          92 SDR---VT----KNEVIGRLVLGPKA-S-GS--G---GHHWKEVCNPPRRQIAE  131 (136)
T ss_pred             CCC---CC----CCccEEEEEECCcC-C-Cc--h---HHHHHHHHhCCCCeeeE
Confidence            987   66    38999999999998 2 21  1   23578877666665543

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s

>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain

Probab=99.69  E-value=2e-16  Score=121.54  Aligned_cols=109  Identities=13%  Similarity=0.115  Sum_probs=86.5

Q ss_pred             ceEEEEEEEEeeCCCCCCCCCcCCcEEEEEECCC---CcEEEeeeecCCCCCCeeeeEEEEEecCC---CcEEEEEEEeC
Q 040360            9 YRTIELTVLSGEDLRIDRRLIKKNAFAIVQTDTS---FDYCTTKVDESGGSHPSWNEKLVIELPMH---ARFITVQVQCK   82 (198)
Q Consensus         9 ~~~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~---~~~~~T~v~~~~g~nP~WNE~f~f~v~~~---~~~L~~eV~~~   82 (198)
                      .+.|.|+|++|++|...+..+..||||+|.+.++   ..+.+|++.+++ .||+|||+|.|.++..   ...|.|+|+|+
T Consensus        12 ~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t-~nP~wne~f~f~~~~~~l~~~~l~~~V~d~   90 (133)
T cd08384          12 RRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKT-LNPEFNEEFFYDIKHSDLAKKTLEITVWDK   90 (133)
T ss_pred             CCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEecc-CCCCcccEEEEECCHHHhCCCEEEEEEEeC
Confidence            4789999999999987777788999999999753   246799999876 9999999999998753   46899999998


Q ss_pred             CCCCCCCCCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEeeCCCCCc
Q 040360           83 SKSSSSGNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRNAKGDK  132 (198)
Q Consensus        83 ~~~~~~g~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~~~Gk~  132 (198)
                      +.   .+    ++++||++.|++.+.  +.   .  ...||++....+++
T Consensus        91 d~---~~----~~~~lG~~~i~l~~~--~~---~--~~~W~~~l~~~~~~  126 (133)
T cd08384          91 DI---GK----SNDYIGGLQLGINAK--GE---R--LRHWLDCLKNPDKK  126 (133)
T ss_pred             CC---CC----CccEEEEEEEecCCC--Cc---h--HHHHHHHHhCCCCC
Confidence            86   55    389999999999852  21   1  23588776544443

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai

>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin

Probab=99.69  E-value=4.3e-16  Score=119.04  Aligned_cols=91  Identities=11%  Similarity=0.134  Sum_probs=76.5

Q ss_pred             EEEEEEEeeCCCCCCCCCcCCcEEEEEECCCCcEEEeeeecCCCCCCeeeeEEEEEecC-CCcEEEEEEEeCCCCCCCCC
Q 040360           12 IELTVLSGEDLRIDRRLIKKNAFAIVQTDTSFDYCTTKVDESGGSHPSWNEKLVIELPM-HARFITVQVQCKSKSSSSGN   90 (198)
Q Consensus        12 LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~~~~~~T~v~~~~g~nP~WNE~f~f~v~~-~~~~L~~eV~~~~~~~~~g~   90 (198)
                      |.|+|++|++|+..+..++.||||+|.+++.....+|++.+++ .||+|||+|.|.+.. ....|.|+|||++.   .+ 
T Consensus         2 lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~~kT~~v~~t-~nP~Wne~f~f~~~~~~~~~L~~~V~d~d~---~~-   76 (124)
T cd04037           2 VRVYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIPNT-LNPVFGKMFELEATLPGNSILKISVMDYDL---LG-   76 (124)
T ss_pred             EEEEEEECcCCCCCCCCCCCCcEEEEEECCeeccceeeEEECC-CCCccceEEEEEecCCCCCEEEEEEEECCC---CC-
Confidence            7899999999988777889999999999872223577777775 999999999998753 35789999999987   65 


Q ss_pred             CCCCCceeEEEEEeCccccC
Q 040360           91 NNNHNKIVGFARIPVSDFIG  110 (198)
Q Consensus        91 ~~~~d~~IG~a~IpL~~l~~  110 (198)
                         +|++||++.|+|.+..-
T Consensus        77 ---~dd~iG~~~i~l~~~~~   93 (124)
T cd04037          77 ---SDDLIGETVIDLEDRFF   93 (124)
T ss_pred             ---CCceeEEEEEeeccccc
Confidence               38999999999998763

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain

Probab=99.68  E-value=6.8e-16  Score=117.03  Aligned_cols=96  Identities=16%  Similarity=0.222  Sum_probs=80.2

Q ss_pred             CcceEEEEEEEEeeCCCCCCCCCcCCcEEEEEECCC---CcEEEeeeecCCCCCCeeeeEEEEE-ecC---CCcEEEEEE
Q 040360            7 SGYRTIELTVLSGEDLRIDRRLIKKNAFAIVQTDTS---FDYCTTKVDESGGSHPSWNEKLVIE-LPM---HARFITVQV   79 (198)
Q Consensus         7 m~~~~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~---~~~~~T~v~~~~g~nP~WNE~f~f~-v~~---~~~~L~~eV   79 (198)
                      ...+.|+|+|++|++|...+..+..||||++.+.+.   ..+.+|++.+++ .||.|||+|.|. ++.   ....|.|+|
T Consensus        12 ~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~-~~P~Wne~f~f~~~~~~~~~~~~l~~~v   90 (123)
T cd04035          12 PANSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKT-RNPEFNETLTYYGITEEDIQRKTLRLLV   90 (123)
T ss_pred             CCCCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecCC-CCCCccceEEEcCCCHHHhCCCEEEEEE
Confidence            345789999999999987776788999999998542   247899999886 999999999996 432   246899999


Q ss_pred             EeCCCCCCCCCCCCCCceeEEEEEeCccccCC
Q 040360           80 QCKSKSSSSGNNNNHNKIVGFARIPVSDFIGG  111 (198)
Q Consensus        80 ~~~~~~~~~g~~~~~d~~IG~a~IpL~~l~~~  111 (198)
                      ||++.   .+     +++||++.++|++|..+
T Consensus        91 ~d~~~---~~-----~~~iG~~~i~l~~l~~~  114 (123)
T cd04035          91 LDEDR---FG-----NDFLGETRIPLKKLKPN  114 (123)
T ss_pred             EEcCC---cC-----CeeEEEEEEEcccCCCC
Confidence            99887   45     89999999999999865

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain

>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13

Probab=99.68  E-value=3e-16  Score=122.77  Aligned_cols=92  Identities=20%  Similarity=0.321  Sum_probs=77.0

Q ss_pred             cceEEEEEEEEeeCCCCCC--CCCcCCcEEEEEECCC---CcEEEeeeecCCCCCCeeeeEEEEEecCC---CcEEEEEE
Q 040360            8 GYRTIELTVLSGEDLRIDR--RLIKKNAFAIVQTDTS---FDYCTTKVDESGGSHPSWNEKLVIELPMH---ARFITVQV   79 (198)
Q Consensus         8 ~~~~LeVtVlsA~~L~~~~--~~~~~dpYvvv~~~~~---~~~~~T~v~~~~g~nP~WNE~f~f~v~~~---~~~L~~eV   79 (198)
                      ..+.|.|+|++|+||...+  ..+..||||+|.+.++   ..+.+|++.+++ .||+|||.|.|.++.+   ...|.|+|
T Consensus        13 ~~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t-~nPvfNE~f~F~v~~~~L~~~~L~~~V   91 (138)
T cd08407          13 AANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHK-INPVWNEMIMFELPSELLAASSVELEV   91 (138)
T ss_pred             CCCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeCC-CCCccccEEEEECCHHHhCccEEEEEE
Confidence            3478999999999998655  2344899999999874   236689999886 9999999999999863   46899999


Q ss_pred             EeCCCCCCCCCCCCCCceeEEEEEeCcc
Q 040360           80 QCKSKSSSSGNNNNHNKIVGFARIPVSD  107 (198)
Q Consensus        80 ~~~~~~~~~g~~~~~d~~IG~a~IpL~~  107 (198)
                      +|++.   ++    ++++||.+.+++..
T Consensus        92 ~d~d~---~~----~~d~iG~v~lg~~~  112 (138)
T cd08407          92 LNQDS---PG----QSLPLGRCSLGLHT  112 (138)
T ss_pred             EeCCC---Cc----CcceeceEEecCcC
Confidence            99987   66    49999999999974

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy

>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1

Probab=99.68  E-value=2.5e-16  Score=121.60  Aligned_cols=93  Identities=14%  Similarity=0.209  Sum_probs=77.8

Q ss_pred             cceEEEEEEEEeeCCCCCCCCCcCCcEEEEEECCC---CcEEEeeeecCCCCCCeeeeEEEEEecCC---CcEEEEEEEe
Q 040360            8 GYRTIELTVLSGEDLRIDRRLIKKNAFAIVQTDTS---FDYCTTKVDESGGSHPSWNEKLVIELPMH---ARFITVQVQC   81 (198)
Q Consensus         8 ~~~~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~---~~~~~T~v~~~~g~nP~WNE~f~f~v~~~---~~~L~~eV~~   81 (198)
                      ..+.|+|+|++|++|+..+..+..||||+|.+.+.   ..+++|++.+++ .||.|||+|.|.++..   ...|.|+|+|
T Consensus        13 ~~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t-~nP~wne~f~f~i~~~~l~~~~l~~~v~d   91 (136)
T cd08402          13 TAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRT-LNPYYNESFSFEVPFEQIQKVHLIVTVLD   91 (136)
T ss_pred             CCCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccceeCC-CCCcccceEEEECCHHHhCCCEEEEEEEe
Confidence            34789999999999987777788999999999642   245689888776 9999999999998753   2489999999


Q ss_pred             CCCCCCCCCCCCCCceeEEEEEeCccc
Q 040360           82 KSKSSSSGNNNNHNKIVGFARIPVSDF  108 (198)
Q Consensus        82 ~~~~~~~g~~~~~d~~IG~a~IpL~~l  108 (198)
                      ++.   +++    |++||++.|++...
T Consensus        92 ~~~---~~~----~~~iG~~~i~~~~~  111 (136)
T cd08402          92 YDR---IGK----NDPIGKVVLGCNAT  111 (136)
T ss_pred             CCC---CCC----CceeEEEEECCccC
Confidence            987   663    89999999999764

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:

>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12

Probab=99.68  E-value=3.4e-16  Score=122.08  Aligned_cols=91  Identities=19%  Similarity=0.274  Sum_probs=77.1

Q ss_pred             ceEEEEEEEEeeCCCCCCCCCcCCcEEEEEECCC---CcEEEeeeecCCCCCCeeeeEEEEEecC---CCcEEEEEEEeC
Q 040360            9 YRTIELTVLSGEDLRIDRRLIKKNAFAIVQTDTS---FDYCTTKVDESGGSHPSWNEKLVIELPM---HARFITVQVQCK   82 (198)
Q Consensus         9 ~~~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~---~~~~~T~v~~~~g~nP~WNE~f~f~v~~---~~~~L~~eV~~~   82 (198)
                      ...|.|+|++|++|...+..+..||||+|.+.++   ..+.+|++.+++ .||+|||+|.|.++.   ....|.|+|+|.
T Consensus        14 ~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t-~nP~~nE~f~F~v~~~~l~~~~l~~~V~~~   92 (136)
T cd08406          14 AERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDD-TNPIFNEAMIFSVPAIVLQDLSLRVTVAES   92 (136)
T ss_pred             CCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccccCC-CCCeeceeEEEECCHHHhCCcEEEEEEEeC
Confidence            4689999999999987777788999999999763   136689999887 999999999999975   357899999999


Q ss_pred             CCCCCCCCCCCCCceeEEEEEeCcc
Q 040360           83 SKSSSSGNNNNHNKIVGFARIPVSD  107 (198)
Q Consensus        83 ~~~~~~g~~~~~d~~IG~a~IpL~~  107 (198)
                      +.   ++    ++++||++.|+...
T Consensus        93 d~---~~----~~~~iG~v~lg~~~  110 (136)
T cd08406          93 TE---DG----KTPNVGHVIIGPAA  110 (136)
T ss_pred             CC---CC----CCCeeEEEEECCCC
Confidence            87   55    38999999998764

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl

>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7

Probab=99.68  E-value=3.3e-16  Score=120.97  Aligned_cols=93  Identities=13%  Similarity=0.208  Sum_probs=78.5

Q ss_pred             cceEEEEEEEEeeCCCCCCCCCcCCcEEEEEECCC---CcEEEeeeecCCCCCCeeeeEEEEEecC---CCcEEEEEEEe
Q 040360            8 GYRTIELTVLSGEDLRIDRRLIKKNAFAIVQTDTS---FDYCTTKVDESGGSHPSWNEKLVIELPM---HARFITVQVQC   81 (198)
Q Consensus         8 ~~~~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~---~~~~~T~v~~~~g~nP~WNE~f~f~v~~---~~~~L~~eV~~   81 (198)
                      ..++|.|+|++|++|...+..+..||||+|.+.+.   ..+++|++.+++ .||.|||+|.|.++.   .+..|.|+|+|
T Consensus        13 ~~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t-~~P~wne~F~f~i~~~~~~~~~l~~~v~d   91 (136)
T cd08405          13 TANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRT-LNPVFNESFIFNIPLERLRETTLIITVMD   91 (136)
T ss_pred             CCCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeCC-CCCcccceEEEeCCHHHhCCCEEEEEEEE
Confidence            45789999999999987777789999999998431   245789998876 999999999999874   24689999999


Q ss_pred             CCCCCCCCCCCCCCceeEEEEEeCccc
Q 040360           82 KSKSSSSGNNNNHNKIVGFARIPVSDF  108 (198)
Q Consensus        82 ~~~~~~~g~~~~~d~~IG~a~IpL~~l  108 (198)
                      ++.   ++    ++++||++.|++.+.
T Consensus        92 ~~~---~~----~~~~lG~~~i~~~~~  111 (136)
T cd08405          92 KDR---LS----RNDLIGKIYLGWKSG  111 (136)
T ss_pred             CCC---CC----CCcEeEEEEECCccC
Confidence            987   66    389999999999986

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves

>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10

Probab=99.68  E-value=4.1e-16  Score=120.15  Aligned_cols=94  Identities=19%  Similarity=0.299  Sum_probs=78.2

Q ss_pred             CCCcceEEEEEEEEeeCCCCCCCCCcCCcEEEEEECCC---CcEEEeeeecCCCCCCeeeeEEEEEecCC---CcEEEEE
Q 040360            5 SSSGYRTIELTVLSGEDLRIDRRLIKKNAFAIVQTDTS---FDYCTTKVDESGGSHPSWNEKLVIELPMH---ARFITVQ   78 (198)
Q Consensus         5 ~~m~~~~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~---~~~~~T~v~~~~g~nP~WNE~f~f~v~~~---~~~L~~e   78 (198)
                      .+...+.|+|+|++|++|+..+..+..||||+|.+.+.   ..+.+|++.+++ .||.|||+|.|.++..   ...|.|+
T Consensus         9 y~~~~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t-~nP~wne~f~f~i~~~~~~~~~l~~~   87 (134)
T cd08403           9 YLPTAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNT-LNPTYNEALVFDVPPENVDNVSLIIA   87 (134)
T ss_pred             EcCCCCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCcccCC-CCCcccceEEEECCHHHhCCCEEEEE
Confidence            34567899999999999988777889999999998542   236688887765 9999999999998653   2469999


Q ss_pred             EEeCCCCCCCCCCCCCCceeEEEEEeCc
Q 040360           79 VQCKSKSSSSGNNNNHNKIVGFARIPVS  106 (198)
Q Consensus        79 V~~~~~~~~~g~~~~~d~~IG~a~IpL~  106 (198)
                      |+|++.   .+    ++++||++.|++.
T Consensus        88 v~d~~~---~~----~~~~IG~~~l~~~  108 (134)
T cd08403          88 VVDYDR---VG----HNELIGVCRVGPN  108 (134)
T ss_pred             EEECCC---CC----CCceeEEEEECCC
Confidence            999987   66    3999999999987

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=99.67  E-value=1.8e-16  Score=163.19  Aligned_cols=117  Identities=18%  Similarity=0.294  Sum_probs=98.4

Q ss_pred             ceEEEEEEEEeeCCCCCCCCCcCCcEEEEEECCCCcEEEeeeecCCCCCCeeeeEEEEEecC--CCcEEEEEEEeCCCCC
Q 040360            9 YRTIELTVLSGEDLRIDRRLIKKNAFAIVQTDTSFDYCTTKVDESGGSHPSWNEKLVIELPM--HARFITVQVQCKSKSS   86 (198)
Q Consensus         9 ~~~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~~~~~~T~v~~~~g~nP~WNE~f~f~v~~--~~~~L~~eV~~~~~~~   86 (198)
                      .|.|.|+|++|+||.  +.++.+||||++.++. .++.||++++++ .||+|||.|.|.+..  ....|+|+|||++.  
T Consensus      1979 ~G~L~V~V~~a~nl~--~~~~~sdPyv~l~~g~-~~~~kTkvvk~~-~nP~Wne~f~~~~~~p~~~~~l~iev~d~d~-- 2052 (2102)
T PLN03200       1979 PGSLTVTIKRGNNLK--QSMGNTNAFCKLTLGN-GPPRQTKVVSHS-SSPEWKEGFTWAFDSPPKGQKLHISCKSKNT-- 2052 (2102)
T ss_pred             CcceEEEEeeccccc--cccCCCCCeEEEEECC-CCcccccccCCC-CCCCcccceeeeecCCCCCCceEEEEEecCc--
Confidence            489999999999998  6678999999999997 357799999987 999999999976654  44789999999998  


Q ss_pred             CCCCCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEeeCCCCCccEE---EEEEEEEee
Q 040360           87 SSGNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRNAKGDKNGI---INVSVRSLK  144 (198)
Q Consensus        87 ~~g~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~~~Gk~~G~---I~lsi~~f~  144 (198)
                       ++     ++.+|.+.|+|.++..+..     ...+|.|.+ +|+..|.   |++.++ +.
T Consensus      2053 -f~-----kd~~G~~~i~l~~vv~~~~-----~~~~~~L~~-~~~k~G~~~~~~~e~~-w~ 2100 (2102)
T PLN03200       2053 -FG-----KSSLGKVTIQIDRVVMEGT-----YSGEYSLNP-ESNKDGSSRTLEIEFQ-WS 2100 (2102)
T ss_pred             -cC-----CCCCceEEEEHHHHhcCce-----eeeeeecCc-ccccCCCcceEEEEEE-ec
Confidence             77     5699999999999997642     346999984 4667777   999888 54

>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17

Probab=99.66  E-value=8.6e-16  Score=119.01  Aligned_cols=112  Identities=13%  Similarity=0.114  Sum_probs=84.1

Q ss_pred             CcceEEEEEEEEeeCCCCCCCCCcCCcEEEEEECCC---CcEEEeeeecCCCCCCeeeeEEEEEecCC---CcEEEEEEE
Q 040360            7 SGYRTIELTVLSGEDLRIDRRLIKKNAFAIVQTDTS---FDYCTTKVDESGGSHPSWNEKLVIELPMH---ARFITVQVQ   80 (198)
Q Consensus         7 m~~~~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~---~~~~~T~v~~~~g~nP~WNE~f~f~v~~~---~~~L~~eV~   80 (198)
                      ...+.|+|+|++|++|...+..+..||||+|.+.+.   ..+++|++.+++ .||+|||+|.|.++..   ...|.|+|+
T Consensus        11 ~~~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t-~nP~wnE~F~f~i~~~~l~~~~l~~~V~   89 (135)
T cd08410          11 PSAGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGT-IDPFYNESFSFKVPQEELENVSLVFTVY   89 (135)
T ss_pred             CCCCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccCC-CCCccceeEEEeCCHHHhCCCEEEEEEE
Confidence            345889999999999987777789999999998442   245789998876 9999999999999642   347999999


Q ss_pred             eCCCCCCCCCCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEeeCCCCCc
Q 040360           81 CKSKSSSSGNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRNAKGDK  132 (198)
Q Consensus        81 ~~~~~~~~g~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~~~Gk~  132 (198)
                      |++.   .+    ++++||++.|....+-..   +   ...|++|....+++
T Consensus        90 d~d~---~~----~~~~iG~~~l~~~~~~~~---~---~~~W~~l~~~~~~~  128 (135)
T cd08410          90 GHNV---KS----SNDFIGRIVIGQYSSGPS---E---TNHWRRMLNSQRTA  128 (135)
T ss_pred             eCCC---CC----CCcEEEEEEEcCccCCch---H---HHHHHHHHhCCCCE
Confidence            9886   55    399999998765333211   1   12477766655543

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-

>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein

Probab=99.66  E-value=9.6e-16  Score=116.92  Aligned_cols=109  Identities=20%  Similarity=0.352  Sum_probs=80.0

Q ss_pred             EEEEEEEeeCCCCCCCCCcCCcEEEEEECCC---CcEEEeeeecCCCCCCeeeeEEEEEecCCCcEEEEEEEeCCCC---
Q 040360           12 IELTVLSGEDLRIDRRLIKKNAFAIVQTDTS---FDYCTTKVDESGGSHPSWNEKLVIELPMHARFITVQVQCKSKS---   85 (198)
Q Consensus        12 LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~---~~~~~T~v~~~~g~nP~WNE~f~f~v~~~~~~L~~eV~~~~~~---   85 (198)
                      |.|+|++|+||+     +..||||++.+++.   ..+++|++++++ .||+|||+|.|+++. ...|.|.|||+..+   
T Consensus         1 L~V~V~~A~~L~-----~~sDPYV~l~v~~~~~~~~~~KTk~i~~T-lnPvWnE~F~i~l~~-s~~L~~~v~d~~~~~~~   73 (118)
T cd08686           1 LNVIVHSAQGFK-----QSANLYCTLEVDSFGYFVKKAKTRVCRDT-TEPNWNEEFEIELEG-SQTLRILCYEKCYSKVK   73 (118)
T ss_pred             CEEEEEeCCCCC-----CCCCCEEEEEEcCccccceeeeeeeecCC-CCCccceEEEEEeCC-CCEEEEEEEEccccccc
Confidence            689999999996     45899999999862   246899999887 999999999999975 67999999997310   


Q ss_pred             -CCCCCCCCCCceeEEEEEeCc--cccCCCCCCCceEeEEEEeeCCCCCccEEEEEEEEEe
Q 040360           86 -SSSGNNNNHNKIVGFARIPVS--DFIGGYAPENYLHFLSYRLRNAKGDKNGIINVSVRSL  143 (198)
Q Consensus        86 -~~~g~~~~~d~~IG~a~IpL~--~l~~~~~~~~~~~~~sy~L~~~~Gk~~G~I~lsi~~f  143 (198)
                       ...+    +|++||.+.|.|.  .|...     ..+.....|.   |   =+|+++++ |
T Consensus        74 ~d~~~----~d~~~G~g~i~Ld~~~~~~~-----~~~~~~~~~~---~---~~~~~s~~-~  118 (118)
T cd08686          74 LDGEG----TDAIMGKGQIQLDPQSLQTK-----KWQEKVISMN---G---ITVNLSIK-F  118 (118)
T ss_pred             ccccC----cccEEEEEEEEECHHHhccC-----CeeEEEEEec---C---EEEEEEEe-C
Confidence             0034    4999998888885  33222     1233444442   2   26777777 5

The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr

>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15

Probab=99.66  E-value=1.2e-15  Score=118.71  Aligned_cols=94  Identities=16%  Similarity=0.206  Sum_probs=77.6

Q ss_pred             ceEEEEEEEEeeCCCCCCCCCcCCcEEEEEECCCC---cEEEeeeecCCCCCCeeeeEEEEEecC---CCcEEEEEEEeC
Q 040360            9 YRTIELTVLSGEDLRIDRRLIKKNAFAIVQTDTSF---DYCTTKVDESGGSHPSWNEKLVIELPM---HARFITVQVQCK   82 (198)
Q Consensus         9 ~~~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~~---~~~~T~v~~~~g~nP~WNE~f~f~v~~---~~~~L~~eV~~~   82 (198)
                      .+.|.|+|++|+||...+ .+.+||||+|.+.+..   .+++|++.+++ .||+|||+|.|.++.   ....|.|+|++.
T Consensus        14 ~~~L~V~V~~a~nL~~~~-~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~-~nP~fnE~F~f~i~~~~l~~~~L~~~V~~~   91 (137)
T cd08409          14 LNRLTVVVLRARGLRQLD-HAHTSVYVKVSLMIHNKVVKTKKTEVVDGA-ASPSFNESFSFKVTSRQLDTASLSLSVMQS   91 (137)
T ss_pred             CCeEEEEEEEecCCCccc-CCCCCeEEEEEEEECCEEeeeeecccEeCC-CCCcccceEEEECCHHHhCccEEEEEEEeC
Confidence            478999999999998766 7789999999997631   36689998775 999999999999975   346899999998


Q ss_pred             CCCCCCCCCCCCCceeEEEEEeCccccCC
Q 040360           83 SKSSSSGNNNNHNKIVGFARIPVSDFIGG  111 (198)
Q Consensus        83 ~~~~~~g~~~~~d~~IG~a~IpL~~l~~~  111 (198)
                      +.   .+    ++++||++.|+...+..+
T Consensus        92 ~~---~~----~~~~lG~v~ig~~~~~~~  113 (137)
T cd08409          92 GG---VR----KSKLLGRVVLGPFMYARG  113 (137)
T ss_pred             CC---CC----CcceEEEEEECCcccCCC
Confidence            86   55    389999999997655444

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id

>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16

Probab=99.65  E-value=1.2e-15  Score=119.04  Aligned_cols=110  Identities=12%  Similarity=0.166  Sum_probs=85.4

Q ss_pred             cceEEEEEEEEeeCCCCCCCCCcCCcEEEEEECCC-C---cEEEeeeecCCCCCCeeeeEEEEEecC---CCcEEEEEEE
Q 040360            8 GYRTIELTVLSGEDLRIDRRLIKKNAFAIVQTDTS-F---DYCTTKVDESGGSHPSWNEKLVIELPM---HARFITVQVQ   80 (198)
Q Consensus         8 ~~~~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~-~---~~~~T~v~~~~g~nP~WNE~f~f~v~~---~~~~L~~eV~   80 (198)
                      ..++|.|+|++|++|...+..+..||||++.+.++ .   .+++|++.+++ .||+|||+|.|.++.   ....|.|+|+
T Consensus        13 ~~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t-~nPvfnEtF~f~i~~~~l~~~~L~~~V~   91 (138)
T cd08408          13 LTGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQ-PDPEFKETFVFQVALFQLSEVTLMFSVY   91 (138)
T ss_pred             CCCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecCC-CCCcEeeeEEEECCHHHhCccEEEEEEE
Confidence            45889999999999987777778999999999752 1   35689999876 999999999999975   3469999999


Q ss_pred             eCCCCCCCCCCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEeeCCCCC
Q 040360           81 CKSKSSSSGNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRNAKGD  131 (198)
Q Consensus        81 ~~~~~~~~g~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~~~Gk  131 (198)
                      +.+.   ++    ++++||++.|++...-.+.      ...|+++.+..++
T Consensus        92 ~~~~---~~----~~~~iG~v~l~~~~~~~~~------~~hW~~~l~~~~~  129 (138)
T cd08408          92 NKRK---MK----RKEMIGWFSLGLNSSGEEE------EEHWNEMKESKGQ  129 (138)
T ss_pred             ECCC---CC----CCcEEEEEEECCcCCCchH------HHHHHHHHhCCCC
Confidence            9887   55    3999999999987542211      1246666554444

Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle

>cd04048 C2A_Copine C2 domain first repeat in Copine

Probab=99.65  E-value=1.8e-15  Score=114.44  Aligned_cols=103  Identities=16%  Similarity=0.215  Sum_probs=81.0

Q ss_pred             EEEEeeCCCCCCCCCcCCcEEEEEECCCC-----cEEEeeeecCCCCCCeeeeEEEEEecC-CCcEEEEEEEeCCCCC-C
Q 040360           15 TVLSGEDLRIDRRLIKKNAFAIVQTDTSF-----DYCTTKVDESGGSHPSWNEKLVIELPM-HARFITVQVQCKSKSS-S   87 (198)
Q Consensus        15 tVlsA~~L~~~~~~~~~dpYvvv~~~~~~-----~~~~T~v~~~~g~nP~WNE~f~f~v~~-~~~~L~~eV~~~~~~~-~   87 (198)
                      -.++|++|...+.+++.||||+|.+.+..     ..++|++++++ .||+|||+|.|.+.. ....|.|+|||++... .
T Consensus         5 ~~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t-~nP~wne~f~f~~~~~~~~~l~~~V~d~d~~~~~   83 (120)
T cd04048           5 LSISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNN-LNPDFVTTFTVDYYFEEVQKLRFEVYDVDSKSKD   83 (120)
T ss_pred             EEEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCC-CCCCceEEEEEEEEeEeeeEEEEEEEEecCCcCC
Confidence            45899999877778899999999998721     25899999987 999999999998643 3568999999987410 0


Q ss_pred             CCCCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEeeC
Q 040360           88 SGNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRN  127 (198)
Q Consensus        88 ~g~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~  127 (198)
                      .+    ++++||++.+++.+|..+.   +  ...+|.|.+
T Consensus        84 ~~----~~d~iG~~~i~l~~l~~~~---~--~~~~~~l~~  114 (120)
T cd04048          84 LS----DHDFLGEAECTLGEIVSSP---G--QKLTLPLKG  114 (120)
T ss_pred             CC----CCcEEEEEEEEHHHHhcCC---C--cEEEEEccC
Confidence            23    3899999999999998653   1  357888853

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma

>PLN02270 phospholipase D alpha

Probab=99.63  E-value=1.1e-14  Score=139.61  Aligned_cols=124  Identities=19%  Similarity=0.224  Sum_probs=105.7

Q ss_pred             ceEEEEEEEEeeCCCCCC------------------CCCcCCcEEEEEECCCCcEEEeeeecCCCCCCeeeeEEEEEecC
Q 040360            9 YRTIELTVLSGEDLRIDR------------------RLIKKNAFAIVQTDTSFDYCTTKVDESGGSHPSWNEKLVIELPM   70 (198)
Q Consensus         9 ~~~LeVtVlsA~~L~~~~------------------~~~~~dpYvvv~~~~~~~~~~T~v~~~~g~nP~WNE~f~f~v~~   70 (198)
                      -|+|+|+|..|++|++.+                  ..+..||||+|.++. ....+|++..+...||.|||.|.+++.+
T Consensus         7 hg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~-a~v~rtr~~~~~~~~p~w~e~f~i~~ah   85 (808)
T PLN02270          7 HGTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEK-ARVGRTRKIENEPKNPRWYESFHIYCAH   85 (808)
T ss_pred             ecceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCC-cEEEEEeecCCCCCCCccccceEEeecc
Confidence            489999999999997420                  114569999999999 6778999998865799999999999999


Q ss_pred             CCcEEEEEEEeCCCCCCCCCCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEeeCCCCCc-cE--EEEEEEEEeeeCC
Q 040360           71 HARFITVQVQCKSKSSSSGNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRNAKGDK-NG--IINVSVRSLKVAA  147 (198)
Q Consensus        71 ~~~~L~~eV~~~~~~~~~g~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~~~Gk~-~G--~I~lsi~~f~~~~  147 (198)
                      ....|.|.|+|.+.   +|     ..+||.+.||+.+++.|...     ..||+|.+.+||+ ++  +|||+++ |.+-.
T Consensus        86 ~~~~v~f~vkd~~~---~g-----~~~ig~~~~p~~~~~~g~~i-----~~~~~~~~~~~~p~~~~~~~~~~~~-f~~~~  151 (808)
T PLN02270         86 MASNIIFTVKDDNP---IG-----ATLIGRAYIPVEEILDGEEV-----DRWVEILDNDKNPIHGGSKIHVKLQ-YFEVT  151 (808)
T ss_pred             CcceEEEEEecCCc---cC-----ceEEEEEEEEHHHhcCCCcc-----ccEEeccCCCCCcCCCCCEEEEEEE-EEEcc
Confidence            88999999999887   88     89999999999999988643     3599999999885 23  8999999 98753

>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus)

Probab=99.62  E-value=4.4e-15  Score=115.82  Aligned_cols=94  Identities=14%  Similarity=0.220  Sum_probs=76.1

Q ss_pred             cceEEEEEEEEeeCCCCCCCCCcCCcEEEEEECCC---CcEEEeeeecCCCCCCeeeeEEEEEecCC--CcEEEEEEEeC
Q 040360            8 GYRTIELTVLSGEDLRIDRRLIKKNAFAIVQTDTS---FDYCTTKVDESGGSHPSWNEKLVIELPMH--ARFITVQVQCK   82 (198)
Q Consensus         8 ~~~~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~---~~~~~T~v~~~~g~nP~WNE~f~f~v~~~--~~~L~~eV~~~   82 (198)
                      ..+.|.|+|++|++|+........||||+|++-..   ..+.+|++.+++..||+|||+|.|+++.+  +..|.|+|+|+
T Consensus        12 ~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~~~v~l~v~v~d~   91 (135)
T cd08692          12 VNSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQQEHGIQFLIKLYSR   91 (135)
T ss_pred             cCCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEeCCchhheeEEEEEEEeC
Confidence            45789999999999986544556799999998753   35789999988755799999999999864  34788888888


Q ss_pred             CCCCCCCCCCCCCceeEEEEEeCccc
Q 040360           83 SKSSSSGNNNNHNKIVGFARIPVSDF  108 (198)
Q Consensus        83 ~~~~~~g~~~~~d~~IG~a~IpL~~l  108 (198)
                      +.   .+    ++++||.+.++..+.
T Consensus        92 ~~---~~----~n~~IG~v~lG~~~~  110 (135)
T cd08692          92 SS---VR----RKHFLGQVWISSDSS  110 (135)
T ss_pred             CC---Cc----CCceEEEEEECCccC
Confidence            76   55    499999999999864

Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho

>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking

Probab=99.62  E-value=5e-15  Score=103.08  Aligned_cols=83  Identities=23%  Similarity=0.334  Sum_probs=70.8

Q ss_pred             EEEEEEEeeCCCCCCCCCcCCcEEEEEECCCC-cEEEeeeecCCCCCCeeeeEEEEEecC-CCcEEEEEEEeCCCCCCCC
Q 040360           12 IELTVLSGEDLRIDRRLIKKNAFAIVQTDTSF-DYCTTKVDESGGSHPSWNEKLVIELPM-HARFITVQVQCKSKSSSSG   89 (198)
Q Consensus        12 LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~~-~~~~T~v~~~~g~nP~WNE~f~f~v~~-~~~~L~~eV~~~~~~~~~g   89 (198)
                      |+|+|++|++|...+..+..||||++.+.... ..++|++.+++ .+|.|||+|.|.+.. ....|.|+||+++.   .+
T Consensus         1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~-~~P~w~e~~~~~~~~~~~~~l~~~V~~~~~---~~   76 (85)
T PF00168_consen    1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKNT-SNPVWNEEFEFPLDDPDLDSLSFEVWDKDS---FG   76 (85)
T ss_dssp             EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSSB-SSEEEEEEEEEEESHGCGTEEEEEEEEETS---SS
T ss_pred             CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeecc-ccceeeeeeeeeeecccccceEEEEEECCC---CC
Confidence            79999999999987777899999999999832 34899999887 999999999999753 34569999999987   66


Q ss_pred             CCCCCCceeEEEE
Q 040360           90 NNNNHNKIVGFAR  102 (198)
Q Consensus        90 ~~~~~d~~IG~a~  102 (198)
                          +|++||+++
T Consensus        77 ----~~~~iG~~~   85 (85)
T PF00168_consen   77 ----KDELIGEVK   85 (85)
T ss_dssp             ----SEEEEEEEE
T ss_pred             ----CCCEEEEEC
Confidence                399999985

C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....

>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.57  E-value=4.6e-14  Score=128.49  Aligned_cols=123  Identities=15%  Similarity=0.189  Sum_probs=100.1

Q ss_pred             ceEEEEEEEEeeCCCCCCCCCcCCcEEEEEECCC-CcEEEeeeecCCCCCCeeeeEEEEEecC---CCcEEEEEEEeCCC
Q 040360            9 YRTIELTVLSGEDLRIDRRLIKKNAFAIVQTDTS-FDYCTTKVDESGGSHPSWNEKLVIELPM---HARFITVQVQCKSK   84 (198)
Q Consensus         9 ~~~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~-~~~~~T~v~~~~g~nP~WNE~f~f~v~~---~~~~L~~eV~~~~~   84 (198)
                      ...|.|+|++|++|...+..+..||||++.+.++ ..+++|++.++. .||.|||+|.|.++.   ....|.|.|||.+.
T Consensus       166 ~~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~kT~v~r~t-lnP~fnEtf~f~v~~~~l~~~~L~l~V~~~dr  244 (421)
T KOG1028|consen  166 LNLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKFKTRVHRKT-LNPVFNETFRFEVPYEELSNRVLHLSVYDFDR  244 (421)
T ss_pred             CCEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCcceeeeeecC-cCCccccceEeecCHHHhccCEEEEEEEecCC
Confidence            4689999999999987776677999999999996 368899999987 999999999999875   35799999999998


Q ss_pred             CCCCCCCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEeeCCC---CCccEEEEEEEEEeee
Q 040360           85 SSSSGNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRNAK---GDKNGIINVSVRSLKV  145 (198)
Q Consensus        85 ~~~~g~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~~~---Gk~~G~I~lsi~~f~~  145 (198)
                         |+    ++++||++.++|.++.....     ...|++|....   .+..|+|.|+++ ..+
T Consensus       245 ---fs----r~~~iGev~~~l~~~~~~~~-----~~~w~~l~~~~~~~~~~~gel~~sL~-Y~p  295 (421)
T KOG1028|consen  245 ---FS----RHDFIGEVILPLGEVDLLST-----TLFWKDLQPSSTDSEELAGELLLSLC-YLP  295 (421)
T ss_pred             ---cc----cccEEEEEEecCcccccccc-----ceeeeccccccCCcccccceEEEEEE-eec
Confidence               76    49999999999998865431     34688887642   223379888888 544

>cd04047 C2B_Copine C2 domain second repeat in Copine

Probab=99.56  E-value=3.3e-14  Score=105.65  Aligned_cols=90  Identities=19%  Similarity=0.273  Sum_probs=74.0

Q ss_pred             EEEEEEeeCCCCCCCCCcCCcEEEEEECCC----CcEEEeeeecCCCCCCeeeeEEEEEecC-----CCcEEEEEEEeCC
Q 040360           13 ELTVLSGEDLRIDRRLIKKNAFAIVQTDTS----FDYCTTKVDESGGSHPSWNEKLVIELPM-----HARFITVQVQCKS   83 (198)
Q Consensus        13 eVtVlsA~~L~~~~~~~~~dpYvvv~~~~~----~~~~~T~v~~~~g~nP~WNE~f~f~v~~-----~~~~L~~eV~~~~   83 (198)
                      .+..++|++|+..+..++.||||+|.+.+.    ...++|++++++ .||+|| +|.|.+..     ....|.|+|||++
T Consensus         3 ~~~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t-~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d   80 (110)
T cd04047           3 VELQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNT-LNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYD   80 (110)
T ss_pred             EEEEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccC-CCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeC
Confidence            355679999998888889999999998762    135899999987 999999 68877532     1479999999998


Q ss_pred             CCCCCCCCCCCCceeEEEEEeCccccCC
Q 040360           84 KSSSSGNNNNHNKIVGFARIPVSDFIGG  111 (198)
Q Consensus        84 ~~~~~g~~~~~d~~IG~a~IpL~~l~~~  111 (198)
                      .   .++    |++||++.++|.+|...
T Consensus        81 ~---~~~----d~~iG~~~~~l~~l~~~  101 (110)
T cd04047          81 S---SGK----HDLIGEFETTLDELLKS  101 (110)
T ss_pred             C---CCC----CcEEEEEEEEHHHHhcC
Confidence            7   663    99999999999999854

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom

>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

Probab=99.55  E-value=3e-14  Score=139.29  Aligned_cols=130  Identities=15%  Similarity=0.195  Sum_probs=107.6

Q ss_pred             CCCC-CCCcceEEEEEEEEeeCCCCCC--CCCcCCcEEEEEECCCCcEEEeeeecCCCCCCeeeeEEEEEecCCCcEEEE
Q 040360            1 MLEK-SSSGYRTIELTVLSGEDLRIDR--RLIKKNAFAIVQTDTSFDYCTTKVDESGGSHPSWNEKLVIELPMHARFITV   77 (198)
Q Consensus         1 ~~~~-~~m~~~~LeVtVlsA~~L~~~~--~~~~~dpYvvv~~~~~~~~~~T~v~~~~g~nP~WNE~f~f~v~~~~~~L~~   77 (198)
                      ||++ +.-+.|.|+|+|.+|++|+..+  ..+..|||+++.+.. ....+|++.++. .||+|||+|.+.|....+.|.+
T Consensus       426 ~m~~~s~~aIGVv~vkI~sa~~lk~~d~~i~~~vDpyit~~~~~-r~~gkT~v~~nt-~nPvwNEt~Yi~lns~~d~L~L  503 (1227)
T COG5038         426 IMAGDSGTAIGVVEVKIKSAEGLKKSDSTINGTVDPYITVTFSD-RVIGKTRVKKNT-LNPVWNETFYILLNSFTDPLNL  503 (1227)
T ss_pred             hhccccCCeeEEEEEEEeeccCcccccccccCCCCceEEEEecc-ccCCccceeecc-CCccccceEEEEecccCCceeE
Confidence            4555 8889999999999999998765  457899999999876 556699999987 9999999999999887889999


Q ss_pred             EEEeCCCCCCCCCCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEeeCCCCCccEEEEEEEEEeee
Q 040360           78 QVQCKSKSSSSGNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRNAKGDKNGIINVSVRSLKV  145 (198)
Q Consensus        78 eV~~~~~~~~~g~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~~~Gk~~G~I~lsi~~f~~  145 (198)
                      +|||.+.   ..+    |+++|.+.++|..|.+.....    ..-|+++. +.+..|.|+++++ |.+
T Consensus       504 slyD~n~---~~s----d~vvG~~~l~L~~L~~~~~~~----ne~~e~~~-~~k~vGrL~yDl~-ffp  558 (1227)
T COG5038         504 SLYDFNS---FKS----DKVVGSTQLDLALLHQNPVKK----NELYEFLR-NTKNVGRLTYDLR-FFP  558 (1227)
T ss_pred             EEEeccc---cCC----cceeeeEEechHHhhhccccc----cceeeeec-cCccceEEEEeee-eec
Confidence            9999766   332    999999999999998765333    34566654 5689999999999 664

>smart00239 C2 Protein kinase C conserved region 2 (CalB)

Probab=99.54  E-value=1.2e-13  Score=97.68  Aligned_cols=93  Identities=26%  Similarity=0.410  Sum_probs=79.2

Q ss_pred             EEEEEEEEeeCCCCCCCCCcCCcEEEEEECCCC--cEEEeeeecCCCCCCeeeeEEEEEecCC-CcEEEEEEEeCCCCCC
Q 040360           11 TIELTVLSGEDLRIDRRLIKKNAFAIVQTDTSF--DYCTTKVDESGGSHPSWNEKLVIELPMH-ARFITVQVQCKSKSSS   87 (198)
Q Consensus        11 ~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~~--~~~~T~v~~~~g~nP~WNE~f~f~v~~~-~~~L~~eV~~~~~~~~   87 (198)
                      .|.|+|++|++|.........+|||.+.+.. .  ..++|++..++ .||.|||+|.|.+... ...|.|+||++..   
T Consensus         1 ~l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~-~~~~~~~T~~~~~~-~~P~w~e~~~~~~~~~~~~~l~i~v~~~~~---   75 (101)
T smart00239        1 TLTVKIISARNLPKKDKKGKSDPYVKVSLDG-DPKEKKKTKVVKNT-LNPVWNETFEFEVPPPELAELEIEVYDKDR---   75 (101)
T ss_pred             CeEEEEEEeeCCCCCCCCCCCCceEEEEEeC-CccceEeeeEecCC-CCCcccceEEEEecCcccCEEEEEEEecCC---
Confidence            4789999999998765556789999999988 3  47899998876 6999999999999775 7899999999876   


Q ss_pred             CCCCCCCCceeEEEEEeCccccCCC
Q 040360           88 SGNNNNHNKIVGFARIPVSDFIGGY  112 (198)
Q Consensus        88 ~g~~~~~d~~IG~a~IpL~~l~~~~  112 (198)
                      .+    .+.+||.+.++|.++..+.
T Consensus        76 ~~----~~~~~G~~~~~l~~~~~~~   96 (101)
T smart00239       76 FG----RDDFIGQVTIPLSDLLLGG   96 (101)
T ss_pred             cc----CCceeEEEEEEHHHcccCc
Confidence            44    3899999999999997654

Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.

>PLN02223 phosphoinositide phospholipase C

Probab=99.52  E-value=2.3e-13  Score=126.07  Aligned_cols=117  Identities=20%  Similarity=0.330  Sum_probs=89.8

Q ss_pred             ceEEEEEEEEeeCCCCC-----CCCCcCCcEEEEEECCC---CcEEEeeeecCCCCCCeeeeEEEEEecCC-CcEEEEEE
Q 040360            9 YRTIELTVLSGEDLRID-----RRLIKKNAFAIVQTDTS---FDYCTTKVDESGGSHPSWNEKLVIELPMH-ARFITVQV   79 (198)
Q Consensus         9 ~~~LeVtVlsA~~L~~~-----~~~~~~dpYvvv~~~~~---~~~~~T~v~~~~g~nP~WNE~f~f~v~~~-~~~L~~eV   79 (198)
                      .++|.|+|++|++|...     +.....||||+|.+.+-   ..+.+|++. ++|.||+|||+|.|.+... -..|.|+|
T Consensus       408 ~~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~-nNg~nPvWne~F~F~i~~PELAlLrf~V  486 (537)
T PLN02223        408 VKILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVK-NNEWKPTWGEEFTFPLTYPDLALISFEV  486 (537)
T ss_pred             ceEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeC-CCCcCceecceeEEEEEccCceEEEEEE
Confidence            47899999999987421     23356899999999862   345678755 5569999999999998543 46899999


Q ss_pred             EeCCCCCCCCCCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEeeCCCCCccEEEEEEEE
Q 040360           80 QCKSKSSSSGNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRNAKGDKNGIINVSVR  141 (198)
Q Consensus        80 ~~~~~~~~~g~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~~~Gk~~G~I~lsi~  141 (198)
                      +|++.   .+    +|++||++.+|+..|..|+        .+.+|++.+|++---..|-++
T Consensus       487 ~D~D~---~~----~ddfiGQ~~LPv~~Lr~Gy--------R~VpL~~~~g~~l~~~~Ll~~  533 (537)
T PLN02223        487 YDYEV---ST----ADAFCGQTCLPVSELIEGI--------RAVPLYDERGKACSSTMLLTR  533 (537)
T ss_pred             EecCC---CC----CCcEEEEEecchHHhcCCc--------eeEeccCCCcCCCCCceEEEE
Confidence            99986   44    2899999999999998876        467999988875333444444

>cd00030 C2 C2 domain

Probab=99.51  E-value=3.1e-13  Score=94.73  Aligned_cols=89  Identities=22%  Similarity=0.338  Sum_probs=77.6

Q ss_pred             EEEEEEEeeCCCCCCCCCcCCcEEEEEECCCCcEEEeeeecCCCCCCeeeeEEEEEecC-CCcEEEEEEEeCCCCCCCCC
Q 040360           12 IELTVLSGEDLRIDRRLIKKNAFAIVQTDTSFDYCTTKVDESGGSHPSWNEKLVIELPM-HARFITVQVQCKSKSSSSGN   90 (198)
Q Consensus        12 LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~~~~~~T~v~~~~g~nP~WNE~f~f~v~~-~~~~L~~eV~~~~~~~~~g~   90 (198)
                      |.|.|++|++|.........+|||.+.+.+ ...++|++..+. .||.|||.|.|.+.. ....|.|+|++.+.   .+ 
T Consensus         1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~-~~~~~T~~~~~~-~~P~w~~~~~~~~~~~~~~~l~i~v~~~~~---~~-   74 (102)
T cd00030           1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGG-KQKFKTKVVKNT-LNPVWNETFEFPVLDPESDTLTVEVWDKDR---FS-   74 (102)
T ss_pred             CEEEEEeeeCCCCcCCCCCCCcEEEEEecc-CceEecceeCCC-CCCcccceEEEEccCCCCCEEEEEEEecCC---CC-
Confidence            579999999998656667899999999987 577899998876 899999999999987 56789999999886   44 


Q ss_pred             CCCCCceeEEEEEeCcccc
Q 040360           91 NNNHNKIVGFARIPVSDFI  109 (198)
Q Consensus        91 ~~~~d~~IG~a~IpL~~l~  109 (198)
                         .+++||.+.+++.++.
T Consensus        75 ---~~~~ig~~~~~l~~l~   90 (102)
T cd00030          75 ---KDDFLGEVEIPLSELL   90 (102)
T ss_pred             ---CCceeEEEEEeHHHhh
Confidence               2889999999999997

The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.

>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.49  E-value=5.5e-14  Score=131.16  Aligned_cols=138  Identities=25%  Similarity=0.280  Sum_probs=107.3

Q ss_pred             CCCCCCCcceEEEEEEEEeeCCCCCCCCCcCCcEEEEEECCCCcEEEeeeecCCCCCCeeeeEEEEEecCCCcEEEEEEE
Q 040360            1 MLEKSSSGYRTIELTVLSGEDLRIDRRLIKKNAFAIVQTDTSFDYCTTKVDESGGSHPSWNEKLVIELPMHARFITVQVQ   80 (198)
Q Consensus         1 ~~~~~~m~~~~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~~~~~~T~v~~~~g~nP~WNE~f~f~v~~~~~~L~~eV~   80 (198)
                      +++|+...+..+.+||+.|++|...++-|+.||||+++++.  .+.+|+++... .||+|||+|.|+.......+.+.||
T Consensus       286 ilegsskwsakitltvlcaqgl~akdktg~sdpyvt~qv~k--tkrrtrti~~~-lnpvw~ekfhfechnstdrikvrvw  362 (1283)
T KOG1011|consen  286 ILEGSSKWSAKITLTVLCAQGLIAKDKTGKSDPYVTAQVGK--TKRRTRTIHQE-LNPVWNEKFHFECHNSTDRIKVRVW  362 (1283)
T ss_pred             HhccccccceeeEEeeeecccceecccCCCCCCcEEEeecc--cchhhHhhhhc-cchhhhhheeeeecCCCceeEEEEe
Confidence            47889999999999999999999999999999999999998  77799998875 9999999999999887789999999


Q ss_pred             eCCCCCCC----CCCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEeeCCCCC--ccEEEEE--EEEEeeeCCcc
Q 040360           81 CKSKSSSS----GNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRNAKGD--KNGIINV--SVRSLKVAADQ  149 (198)
Q Consensus        81 ~~~~~~~~----g~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~~~Gk--~~G~I~l--si~~f~~~~~~  149 (198)
                      |++.+..+    ...+-.|+|||...|-+..|...       -+.||.|.....+  ..|.|+|  ++. +++.+..
T Consensus       363 ded~dlksklrqkl~resddflgqtvievrtlsge-------mdvwynlekrtdksavsgairlhisve-ikgeekv  431 (1283)
T KOG1011|consen  363 DEDNDLKSKLRQKLTRESDDFLGQTVIEVRTLSGE-------MDVWYNLEKRTDKSAVSGAIRLHISVE-IKGEEKV  431 (1283)
T ss_pred             cCcccHHHHHHHHhhhcccccccceeEEEEecccc-------hhhhcchhhccchhhccceEEEEEEEE-EcCcccc
Confidence            98753110    00011388999999999988643       2479999765433  5665544  444 4444443

>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.47  E-value=2.3e-14  Score=129.05  Aligned_cols=106  Identities=15%  Similarity=0.161  Sum_probs=90.3

Q ss_pred             cceEEEEEEEEeeCCCCCCCCCcCCcEEEEEECCC---CcEEEeeeecCCCCCCeeeeEEEEEecCC--CcEEEEEEEeC
Q 040360            8 GYRTIELTVLSGEDLRIDRRLIKKNAFAIVQTDTS---FDYCTTKVDESGGSHPSWNEKLVIELPMH--ARFITVQVQCK   82 (198)
Q Consensus         8 ~~~~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~---~~~~~T~v~~~~g~nP~WNE~f~f~v~~~--~~~L~~eV~~~   82 (198)
                      +...|.|+|..|++|...+.+|-.||||.+.+-++   ..+++|++++.+ +||+|||+|+|.|.+.  .+.|.|||||+
T Consensus       178 ~~~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~~-LNP~wNEtftf~Lkp~DkdrRlsiEvWDW  256 (683)
T KOG0696|consen  178 KRDVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKAT-LNPVWNETFTFKLKPSDKDRRLSIEVWDW  256 (683)
T ss_pred             cCceEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhhh-cCccccceeEEecccccccceeEEEEecc
Confidence            34579999999999988888999999999999875   457899999987 9999999999999653  57899999999


Q ss_pred             CCCCCCCCCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEeeC
Q 040360           83 SKSSSSGNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRN  127 (198)
Q Consensus        83 ~~~~~~g~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~  127 (198)
                      +.   ..    +++++|...+-++||.....      ..||.|..
T Consensus       257 Dr---Ts----RNDFMGslSFgisEl~K~p~------~GWyKlLs  288 (683)
T KOG0696|consen  257 DR---TS----RNDFMGSLSFGISELQKAPV------DGWYKLLS  288 (683)
T ss_pred             cc---cc----cccccceecccHHHHhhcch------hhHHHHhh
Confidence            87   44    48999999999999986542      35898875

>PLN02952 phosphoinositide phospholipase C

Probab=99.47  E-value=7.8e-13  Score=124.41  Aligned_cols=119  Identities=22%  Similarity=0.324  Sum_probs=95.8

Q ss_pred             ceEEEEEEEEeeCCCCC------CCCCcCCcEEEEEECCC---CcEEEeeeecCCCCCCeeeeEEEEEecCC-CcEEEEE
Q 040360            9 YRTIELTVLSGEDLRID------RRLIKKNAFAIVQTDTS---FDYCTTKVDESGGSHPSWNEKLVIELPMH-ARFITVQ   78 (198)
Q Consensus         9 ~~~LeVtVlsA~~L~~~------~~~~~~dpYvvv~~~~~---~~~~~T~v~~~~g~nP~WNE~f~f~v~~~-~~~L~~e   78 (198)
                      .++|.|+|++|++|+..      +.....||||+|.+.+-   ..+.+|+++.++ .||+|||+|.|.+... -..|.|+
T Consensus       469 ~~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN-~nPvWnE~F~F~i~~PELAllrf~  547 (599)
T PLN02952        469 KKTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDN-WYPAWNEEFSFPLTVPELALLRIE  547 (599)
T ss_pred             cceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCC-CCcccCCeeEEEEEcCCccEEEEE
Confidence            46899999999998532      11234599999999862   356799999887 8999999999988653 4689999


Q ss_pred             EEeCCCCCCCCCCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEeeCCCCCccEEEEEEEEEee
Q 040360           79 VQCKSKSSSSGNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRNAKGDKNGIINVSVRSLK  144 (198)
Q Consensus        79 V~~~~~~~~~g~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~~~Gk~~G~I~lsi~~f~  144 (198)
                      |+|++.   .+    ++++||++.|||..|..|+        .+.+|++..|+..+.++|-++ |.
T Consensus       548 V~D~D~---~~----~ddfiGq~~lPv~~Lr~Gy--------R~VpL~~~~G~~l~~a~Llv~-f~  597 (599)
T PLN02952        548 VREYDM---SE----KDDFGGQTCLPVSELRPGI--------RSVPLHDKKGEKLKNVRLLMR-FI  597 (599)
T ss_pred             EEecCC---CC----CCCeEEEEEcchhHhcCCc--------eeEeCcCCCCCCCCCEEEEEE-EE
Confidence            999886   55    2899999999999998876        477999999988777777777 64

>PLN02228 Phosphoinositide phospholipase C

Probab=99.38  E-value=7.9e-12  Score=117.02  Aligned_cols=121  Identities=18%  Similarity=0.289  Sum_probs=93.6

Q ss_pred             eEEEEEEEEeeCCCC---C---CCCCcCCcEEEEEECCC---CcEEEeeeecCCCCCCee-eeEEEEEecCC-CcEEEEE
Q 040360           10 RTIELTVLSGEDLRI---D---RRLIKKNAFAIVQTDTS---FDYCTTKVDESGGSHPSW-NEKLVIELPMH-ARFITVQ   78 (198)
Q Consensus        10 ~~LeVtVlsA~~L~~---~---~~~~~~dpYvvv~~~~~---~~~~~T~v~~~~g~nP~W-NE~f~f~v~~~-~~~L~~e   78 (198)
                      .+|.|+|++|+.|..   .   +.....||||.|.+.+.   ..+++|++..++ .||.| ||+|.|.+... -..|.|+
T Consensus       431 ~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~-~nP~W~~e~f~F~~~~pELA~lRf~  509 (567)
T PLN02228        431 TTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQ-WFPIWGNDEFLFQLRVPELALLWFK  509 (567)
T ss_pred             ceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCC-CCceECCCeEEEEEEcCceeEEEEE
Confidence            579999999999732   1   12234799999999862   356799998775 89999 99999998653 4799999


Q ss_pred             EEeCCCCCCCCCCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEeeCCCCCc--cEEEEEEEEEeeeCC
Q 040360           79 VQCKSKSSSSGNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRNAKGDK--NGIINVSVRSLKVAA  147 (198)
Q Consensus        79 V~~~~~~~~~g~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~~~Gk~--~G~I~lsi~~f~~~~  147 (198)
                      |+|++.   .+    .|++||++.|||..|..|+        ...+|++..|+.  ..+|-+.+. |.++.
T Consensus       510 V~D~d~---~~----~d~figq~~lPv~~Lr~GY--------R~VpL~~~~G~~l~~atLfv~~~-~~~~~  564 (567)
T PLN02228        510 VQDYDN---DT----QNDFAGQTCLPLPELKSGV--------RAVRLHDRAGKAYKNTRLLVSFA-LDPPY  564 (567)
T ss_pred             EEeCCC---CC----CCCEEEEEEcchhHhhCCe--------eEEEccCCCCCCCCCeEEEEEEE-EcCcc
Confidence            999876   44    2899999999999998875        466899988874  455666666 65443

>PLN02230 phosphoinositide phospholipase C 4

Probab=99.37  E-value=5.3e-12  Score=118.73  Aligned_cols=108  Identities=22%  Similarity=0.317  Sum_probs=85.7

Q ss_pred             ceEEEEEEEEeeCCCCC------CCCCcCCcEEEEEECC---CCcEEEeeeecCCCCCCeeeeEEEEEecCC-CcEEEEE
Q 040360            9 YRTIELTVLSGEDLRID------RRLIKKNAFAIVQTDT---SFDYCTTKVDESGGSHPSWNEKLVIELPMH-ARFITVQ   78 (198)
Q Consensus         9 ~~~LeVtVlsA~~L~~~------~~~~~~dpYvvv~~~~---~~~~~~T~v~~~~g~nP~WNE~f~f~v~~~-~~~L~~e   78 (198)
                      ..+|.|+|++++++...      +.....||||+|.+.+   +..+.+|++..+ |.||+|||+|.|.+... -..|.|+
T Consensus       468 ~~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n-~~nP~Wneef~F~l~vPELAllRf~  546 (598)
T PLN02230        468 KKTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYD-TWTPIWNKEFIFPLAVPELALLRVE  546 (598)
T ss_pred             CcEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCC-CCCCccCCeeEEEEEcCceeEEEEE
Confidence            46899999999987421      2223579999999986   234568887666 59999999999988653 4799999


Q ss_pred             EEeCCCCCCCCCCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEeeCCCCCc
Q 040360           79 VQCKSKSSSSGNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRNAKGDK  132 (198)
Q Consensus        79 V~~~~~~~~~g~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~~~Gk~  132 (198)
                      |+|++.   .+    +|++||++.||+.+|..|+        ...+|++.+|..
T Consensus       547 V~d~d~---~~----~ddfiGQ~~lPv~~Lr~Gy--------R~V~L~~~~G~~  585 (598)
T PLN02230        547 VHEHDI---NE----KDDFGGQTCLPVSEIRQGI--------HAVPLFNRKGVK  585 (598)
T ss_pred             EEECCC---CC----CCCEEEEEEcchHHhhCcc--------ceEeccCCCcCC
Confidence            999886   44    3999999999999998886        366899988864

>PLN02222 phosphoinositide phospholipase C 2

Probab=99.34  E-value=1.9e-11  Score=114.70  Aligned_cols=107  Identities=21%  Similarity=0.296  Sum_probs=85.6

Q ss_pred             eEEEEEEEEeeCCCC------CCCCCcCCcEEEEEECC---CCcEEEeeeecCCCCCCeeeeEEEEEecCC-CcEEEEEE
Q 040360           10 RTIELTVLSGEDLRI------DRRLIKKNAFAIVQTDT---SFDYCTTKVDESGGSHPSWNEKLVIELPMH-ARFITVQV   79 (198)
Q Consensus        10 ~~LeVtVlsA~~L~~------~~~~~~~dpYvvv~~~~---~~~~~~T~v~~~~g~nP~WNE~f~f~v~~~-~~~L~~eV   79 (198)
                      ++|.|+|++++++..      .......||||.|.+.+   +..+.+|+++.++ .||.|||+|.|.+... -..|.|+|
T Consensus       452 ~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn-~nP~W~e~f~F~i~~PeLAllRf~V  530 (581)
T PLN02222        452 TTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDN-WIPAWDEVFEFPLTVPELALLRLEV  530 (581)
T ss_pred             ceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCC-CCcccCCeeEEEEEcCceeEEEEEE
Confidence            689999999998531      11234579999999975   2356799999887 7999999999987543 47999999


Q ss_pred             EeCCCCCCCCCCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEeeCCCCCc
Q 040360           80 QCKSKSSSSGNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRNAKGDK  132 (198)
Q Consensus        80 ~~~~~~~~~g~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~~~Gk~  132 (198)
                      +|++.   .+    .|++||++.||+..|..|+        ...+|++..|..
T Consensus       531 ~d~D~---~~----~ddfigq~~lPv~~Lr~Gy--------R~V~L~~~~g~~  568 (581)
T PLN02222        531 HEYDM---SE----KDDFGGQTCLPVWELSQGI--------RAFPLHSRKGEK  568 (581)
T ss_pred             EECCC---CC----CCcEEEEEEcchhhhhCcc--------ceEEccCCCcCC
Confidence            99876   44    2899999999999998886        366899988864

>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin

Probab=99.33  E-value=1.6e-11  Score=95.69  Aligned_cols=94  Identities=16%  Similarity=0.095  Sum_probs=76.9

Q ss_pred             EEEEEEEEeeCCCCCC--CCCc--CCcEEEEEECCC-CcEEEeeeecCCCCC--CeeeeEEEEEecC-------------
Q 040360           11 TIELTVLSGEDLRIDR--RLIK--KNAFAIVQTDTS-FDYCTTKVDESGGSH--PSWNEKLVIELPM-------------   70 (198)
Q Consensus        11 ~LeVtVlsA~~L~~~~--~~~~--~dpYvvv~~~~~-~~~~~T~v~~~~g~n--P~WNE~f~f~v~~-------------   70 (198)
                      .|+|.|.+|+++....  ..+.  .||||++++.+. ..+++|.|+.++ .|  |.||+.|.|+++.             
T Consensus         1 eLRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyrs-lnG~~~FNwRfvF~~~~~~~~~~~~~~~~~   79 (133)
T cd08374           1 ELRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHYRS-LDGEGNFNWRFVFPFDYLPAEKKIVVIKKE   79 (133)
T ss_pred             CEEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEEec-CCCCcEEeEEEEEeeecCCccceeEEEeec
Confidence            4899999999965432  2453  899999999984 467899999987 77  9999999988754             


Q ss_pred             --------C---CcEEEEEEEeCCCCCCCCCCCCCCceeEEEEEeCccccCCC
Q 040360           71 --------H---ARFITVQVQCKSKSSSSGNNNNHNKIVGFARIPVSDFIGGY  112 (198)
Q Consensus        71 --------~---~~~L~~eV~~~~~~~~~g~~~~~d~~IG~a~IpL~~l~~~~  112 (198)
                              +   ...|.|+|||.+.   ++    .|++||++.++|..+..+.
T Consensus        80 ~~~~~~~~e~~~~~~L~lqvwD~D~---~s----~dd~iG~~~l~l~~l~~~~  125 (133)
T cd08374          80 HFWSLDETEYKIPPKLTLQVWDNDK---FS----PDDFLGSLELDLSILPRPA  125 (133)
T ss_pred             cccccCcceEecCcEEEEEEEECcc---cC----CCCcceEEEEEhhhccccc
Confidence                    1   2589999999987   55    3899999999999997764

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae

Probab=99.32  E-value=5.5e-12  Score=94.29  Aligned_cols=86  Identities=19%  Similarity=0.239  Sum_probs=72.5

Q ss_pred             EEEEEEEeeCCCCCC---CCCcCCcEEEEEECCCCcEEEeeeecCCCCCCeeeeEEEEEecCCCcEEEEEEEeCCCCCCC
Q 040360           12 IELTVLSGEDLRIDR---RLIKKNAFAIVQTDTSFDYCTTKVDESGGSHPSWNEKLVIELPMHARFITVQVQCKSKSSSS   88 (198)
Q Consensus        12 LeVtVlsA~~L~~~~---~~~~~dpYvvv~~~~~~~~~~T~v~~~~g~nP~WNE~f~f~v~~~~~~L~~eV~~~~~~~~~   88 (198)
                      |.|+|.+|+||....   ..+++||||++.+++ ..+.+|++.    .||.|||+|.|+|. .+..+.|.|||+..   .
T Consensus         1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKved-~~kaRTr~s----rnd~WnE~F~i~Vd-k~nEiel~VyDk~~---~   71 (109)
T cd08689           1 LTITITSARDVDHIASPRFSKRPETYVSIKVED-VERARTKPS----RNDRWNEDFEIPVE-KNNEEEVIVYDKGG---D   71 (109)
T ss_pred             CEEEEEEEecCccccchhhccCCCcEEEEEECC-EEEEeccCC----CCCcccceEEEEec-CCcEEEEEEEeCCC---C
Confidence            689999999997544   457889999999999 568899874    79999999999995 47899999999865   2


Q ss_pred             CCCCCCCceeEEEEEeCccccCC
Q 040360           89 GNNNNHNKIVGFARIPVSDFIGG  111 (198)
Q Consensus        89 g~~~~~d~~IG~a~IpL~~l~~~  111 (198)
                      .     .-.||..=|+|+|+...
T Consensus        72 ~-----~~Pi~llW~~~sdi~Ee   89 (109)
T cd08689          72 Q-----PVPVGLLWLRLSDIAEE   89 (109)
T ss_pred             e-----ecceeeehhhHHHHHHH
Confidence            2     66799999999999754

This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that

>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]

Probab=99.32  E-value=6.7e-12  Score=117.95  Aligned_cols=123  Identities=16%  Similarity=0.259  Sum_probs=105.2

Q ss_pred             eEEEEEEEEeeCCCCCCCCCcCCcEEEEEECCCCcEEEeeeecCCCCCCeeeeEEEEEecCCCcEEEEEEEeCCCCCCCC
Q 040360           10 RTIELTVLSGEDLRIDRRLIKKNAFAIVQTDTSFDYCTTKVDESGGSHPSWNEKLVIELPMHARFITVQVQCKSKSSSSG   89 (198)
Q Consensus        10 ~~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~~~~~~T~v~~~~g~nP~WNE~f~f~v~~~~~~L~~eV~~~~~~~~~g   89 (198)
                      ..|.|.|..|++|...+..+..||||+|.++. ...++|.++.++ ..|.|.|.|.|.+|..-+.|.|-|||++.    +
T Consensus         5 ~sl~vki~E~knL~~~~~~g~~D~yC~v~lD~-E~v~RT~tv~ks-L~PF~gEe~~~~iP~~F~~l~fYv~D~d~----~   78 (800)
T KOG2059|consen    5 QSLKVKIGEAKNLPSYGPSGMRDCYCTVNLDQ-EEVCRTATVEKS-LCPFFGEEFYFEIPRTFRYLSFYVWDRDL----K   78 (800)
T ss_pred             cceeEEEeecccCCCCCCCCCcCcceEEeecc-hhhhhhhhhhhh-cCCccccceEEecCcceeeEEEEEecccc----c
Confidence            46899999999999888888899999999998 678899999997 99999999999999877899999999884    4


Q ss_pred             CCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEee--CCCCCccEEEEEEEEEeeeCCc
Q 040360           90 NNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLR--NAKGDKNGIINVSVRSLKVAAD  148 (198)
Q Consensus        90 ~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~--~~~Gk~~G~I~lsi~~f~~~~~  148 (198)
                          +|+.||.+.|.=.+|....   +  ...|+.|.  |++...+|+|||+++ |.+...
T Consensus        79 ----~D~~IGKvai~re~l~~~~---~--~d~W~~L~~VD~dsEVQG~v~l~l~-~~e~~~  129 (800)
T KOG2059|consen   79 ----RDDIIGKVAIKREDLHMYP---G--KDTWFSLQPVDPDSEVQGKVHLELA-LTEAIQ  129 (800)
T ss_pred             ----cccccceeeeeHHHHhhCC---C--CccceeccccCCChhhceeEEEEEE-eccccC
Confidence                4999999999988887653   2  23466665  467789999999999 887644

>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]

Probab=99.31  E-value=1.2e-11  Score=117.33  Aligned_cols=116  Identities=21%  Similarity=0.357  Sum_probs=91.4

Q ss_pred             EEEEEEEEeeCCCC-C--CCC-CcCCcEEEEEECC---CCcEEEeeeecCCCCCCeeeeEEEEEecCC-CcEEEEEEEeC
Q 040360           11 TIELTVLSGEDLRI-D--RRL-IKKNAFAIVQTDT---SFDYCTTKVDESGGSHPSWNEKLVIELPMH-ARFITVQVQCK   82 (198)
Q Consensus        11 ~LeVtVlsA~~L~~-~--~~~-~~~dpYvvv~~~~---~~~~~~T~v~~~~g~nP~WNE~f~f~v~~~-~~~L~~eV~~~   82 (198)
                      +|.|.|++++++.. .  ..+ .-.||||.|++.+   +....+|++++++|-||.|+|+|.|.|... -+.|+|+|+|+
T Consensus       617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPELAliRF~V~d~  696 (746)
T KOG0169|consen  617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPELALIRFEVHDY  696 (746)
T ss_pred             eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccceeEEEEEEEec
Confidence            89999999997743 2  222 4579999999986   235679998888889999999999999654 47899999999


Q ss_pred             CCCCCCCCCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEeeCCCCCc--cEEEEEEEE
Q 040360           83 SKSSSSGNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRNAKGDK--NGIINVSVR  141 (198)
Q Consensus        83 ~~~~~~g~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~~~Gk~--~G~I~lsi~  141 (198)
                      +.   .++    |+|+|+..||+.+|..|+        ...+|.+..|..  .-.|-+.++
T Consensus       697 d~---~~~----ddF~GQ~tlP~~~L~~Gy--------RhVpL~~~~G~~~~~asLfv~i~  742 (746)
T KOG0169|consen  697 DY---IGK----DDFIGQTTLPVSELRQGY--------RHVPLLSREGEALSSASLFVRIA  742 (746)
T ss_pred             CC---CCc----ccccceeeccHHHhhCce--------eeeeecCCCCccccceeEEEEEE
Confidence            98   673    999999999999999886        356888877863  334444444

>PLN02352 phospholipase D epsilon

Probab=99.31  E-value=4.3e-11  Score=114.81  Aligned_cols=126  Identities=15%  Similarity=0.125  Sum_probs=97.5

Q ss_pred             CCCCCCCcceEEEEEEEEeeCCCCCC----CC-CcCCcEEEEEECCCCcEEEeeeecCCCCCCeeeeEEEEEecCCC-cE
Q 040360            1 MLEKSSSGYRTIELTVLSGEDLRIDR----RL-IKKNAFAIVQTDTSFDYCTTKVDESGGSHPSWNEKLVIELPMHA-RF   74 (198)
Q Consensus         1 ~~~~~~m~~~~LeVtVlsA~~L~~~~----~~-~~~dpYvvv~~~~~~~~~~T~v~~~~g~nP~WNE~f~f~v~~~~-~~   74 (198)
                      |.+|-..--|+|++||..|+-+...-    .. ...||||+|.++. ....+|   .+. .||.|||.|.+++.+.. ..
T Consensus         1 ~~~~~~~lhg~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~-~~v~rt---~~~-~~p~w~e~f~i~~ah~~~~~   75 (758)
T PLN02352          1 MEEKQKFFHGTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIGN-KKVAKT---SHE-YDRVWNQTFQILCAHPLDST   75 (758)
T ss_pred             CcccccccccceEEEEEEeeehhhcccccccccCCCCceEEEEeCC-cEEecC---CCC-CCCccccceeEEeeeecCCc
Confidence            44555566799999999998553221    11 1239999999998 566677   444 69999999999999877 68


Q ss_pred             EEEEEEeCCCCCCCCCCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEeeCCCCCc-cE-EEEEEEEEeeeCCc
Q 040360           75 ITVQVQCKSKSSSSGNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRNAKGDK-NG-IINVSVRSLKVAAD  148 (198)
Q Consensus        75 L~~eV~~~~~~~~~g~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~~~Gk~-~G-~I~lsi~~f~~~~~  148 (198)
                      |.|.|+|       +     ..+||.+.||+.+++.|..    ....||+|.+.+||+ .| +|+|+++ |.+...
T Consensus        76 ~~f~vk~-------~-----~~~ig~~~~p~~~~~~g~~----~~~~~~~~~~~~~~p~~~~~~~~~~~-~~~~~~  134 (758)
T PLN02352         76 ITITLKT-------K-----CSILGRFHIQAHQIVTEAS----FINGFFPLIMENGKPNPELKLRFMLW-FRPAEL  134 (758)
T ss_pred             EEEEEec-------C-----CeEEEEEEEEHHHhhCCCc----ccceEEEcccCCCCCCCCCEEEEEEE-EEEhhh
Confidence            9999986       3     5699999999999998742    134699999998874 44 8999999 987643

>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

Probab=99.24  E-value=2.7e-11  Score=118.94  Aligned_cols=123  Identities=20%  Similarity=0.229  Sum_probs=98.7

Q ss_pred             ceEEEEEEEEeeCCCCCCCCCcCCcEEEEEECCCCcEEEeeeecCCCCCCeeeeEEEEEecC-CCcEEEEEEEeCCCCCC
Q 040360            9 YRTIELTVLSGEDLRIDRRLIKKNAFAIVQTDTSFDYCTTKVDESGGSHPSWNEKLVIELPM-HARFITVQVQCKSKSSS   87 (198)
Q Consensus         9 ~~~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~~~~~~T~v~~~~g~nP~WNE~f~f~v~~-~~~~L~~eV~~~~~~~~   87 (198)
                      .|-|+|.+.+|++|+..+..+..||||++.+.+ ...++|++++++ +||+|||.+.+++.. ....|.|.|+|++.   
T Consensus      1039 sG~l~I~~~~~~nl~~~d~ng~sDpfv~~~ln~-k~vyktkv~Kkt-lNPvwNEe~~i~v~~r~~D~~~i~v~Dwd~--- 1113 (1227)
T COG5038        1039 SGYLTIMLRSGENLPSSDENGYSDPFVKLFLNE-KSVYKTKVVKKT-LNPVWNEEFTIEVLNRVKDVLTINVNDWDS--- 1113 (1227)
T ss_pred             cCcEEEEEeccCCCcccccCCCCCceEEEEecc-eecccccchhcc-CCCCccccceEeeeccccceEEEEEeeccc---
Confidence            578999999999999988889999999999998 568999999997 999999999999974 45789999999987   


Q ss_pred             CCCCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEeeCCC-CCccEEEEEEEEEeeeC
Q 040360           88 SGNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRNAK-GDKNGIINVSVRSLKVA  146 (198)
Q Consensus        88 ~g~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~~~-Gk~~G~I~lsi~~f~~~  146 (198)
                      .+    ++++||.+.|+|..+..+.. .    .....|..+. +...|.+|.... |...
T Consensus      1114 ~~----knd~lg~~~idL~~l~~~~~-~----n~~i~ldgk~~~~~~g~~~~~~~-~r~~ 1163 (1227)
T COG5038        1114 GE----KNDLLGTAEIDLSKLEPGGT-T----NSNIPLDGKTFIVLDGTLHPGFN-FRSK 1163 (1227)
T ss_pred             CC----CccccccccccHhhcCcCCc-c----ceeeeccCcceEecccEeeccee-cchh
Confidence            45    49999999999999986642 1    1233443322 345677777766 6544

>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.12  E-value=3.2e-10  Score=103.41  Aligned_cols=91  Identities=15%  Similarity=0.213  Sum_probs=77.5

Q ss_pred             ceEEEEEEEEeeCCCCCCCCCcCCcEEEEEECCC---CcEEEeeeecCCCCCCeeeeEEEEEecCC---CcEEEEEEEeC
Q 040360            9 YRTIELTVLSGEDLRIDRRLIKKNAFAIVQTDTS---FDYCTTKVDESGGSHPSWNEKLVIELPMH---ARFITVQVQCK   82 (198)
Q Consensus         9 ~~~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~---~~~~~T~v~~~~g~nP~WNE~f~f~v~~~---~~~L~~eV~~~   82 (198)
                      .+.|.|.|+.|++|+..+..+..||||++.+-..   ..+.+|.+.++. .||+|||+|.|.++.+   +..|.|+|||+
T Consensus       297 ~g~ltv~v~kar~L~~~~~~~~~d~~Vk~~l~~~~~~~~kkkT~~~~~~-~npv~nesf~F~vp~~~l~~~~l~l~V~d~  375 (421)
T KOG1028|consen  297 AGRLTVVVIKARNLKSMDVGGLSDPYVKVTLLDGDKRLSKKKTSVKKKT-LNPVFNETFVFDVPPEQLAEVSLELTVWDH  375 (421)
T ss_pred             CCeEEEEEEEecCCCcccCCCCCCccEEEEEecCCceeeeeeeecccCC-CCCcccccEEEeCCHHHhheeEEEEEEEEc
Confidence            4889999999999998787888999999999764   356788888876 9999999999999853   45899999999


Q ss_pred             CCCCCCCCCCCCCceeEEEEEeCcc
Q 040360           83 SKSSSSGNNNNHNKIVGFARIPVSD  107 (198)
Q Consensus        83 ~~~~~~g~~~~~d~~IG~a~IpL~~  107 (198)
                      +.   ++.    +++||.+.+....
T Consensus       376 d~---~~~----~~~iG~~~lG~~~  393 (421)
T KOG1028|consen  376 DT---LGS----NDLIGRCILGSDS  393 (421)
T ss_pred             cc---ccc----cceeeEEEecCCC
Confidence            98   773    7799988887765

>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]

Probab=98.97  E-value=3.9e-09  Score=101.01  Aligned_cols=103  Identities=24%  Similarity=0.286  Sum_probs=81.6

Q ss_pred             ceEEEEEEEEeeCCCCCCCCCcCCcEEEEEECCC---CcEEEeeeecCCCCCCeee-eEEEEEecCC-CcEEEEEEEeCC
Q 040360            9 YRTIELTVLSGEDLRIDRRLIKKNAFAIVQTDTS---FDYCTTKVDESGGSHPSWN-EKLVIELPMH-ARFITVQVQCKS   83 (198)
Q Consensus         9 ~~~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~---~~~~~T~v~~~~g~nP~WN-E~f~f~v~~~-~~~L~~eV~~~~   83 (198)
                      ..+|.|.|+.|+.|...++ +-..|||.|.+-+-   ..+++|.++.++|.||+|| |+|.|.+... -.+|.|.|++++
T Consensus      1064 p~~lsv~vigaRHL~k~gr-~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~A~lRF~V~eeD 1142 (1267)
T KOG1264|consen 1064 PMTLSVKVLGARHLPKLGR-SIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEFAFLRFVVYEED 1142 (1267)
T ss_pred             ceEEEEEEeeccccccCCC-CccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCceEEEEEEEeccc
Confidence            4789999999999974433 33579999999762   3566666666667999999 9999999653 479999999999


Q ss_pred             CCCCCCCCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEeeC
Q 040360           84 KSSSSGNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRN  127 (198)
Q Consensus        84 ~~~~~g~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~  127 (198)
                      .   ++    +..|||.|..|+..+-.|.        .+.+|++
T Consensus      1143 m---fs----~~~FiaqA~yPv~~ik~Gf--------RsVpLkN 1171 (1267)
T KOG1264|consen 1143 M---FS----DPNFLAQATYPVKAIKSGF--------RSVPLKN 1171 (1267)
T ss_pred             c---cC----Ccceeeeeecchhhhhccc--------eeeeccc
Confidence            8   66    3679999999999998774        4667765

>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]

Probab=98.94  E-value=4.2e-09  Score=98.10  Aligned_cols=126  Identities=13%  Similarity=0.149  Sum_probs=102.9

Q ss_pred             cceEEEEEEEEeeCCCCCCCC-CcCCcEEEEEECCCCcEEEeeeecCCCCCCeeeeE-EEEEecC---CCcEEEEEEEeC
Q 040360            8 GYRTIELTVLSGEDLRIDRRL-IKKNAFAIVQTDTSFDYCTTKVDESGGSHPSWNEK-LVIELPM---HARFITVQVQCK   82 (198)
Q Consensus         8 ~~~~LeVtVlsA~~L~~~~~~-~~~dpYvvv~~~~~~~~~~T~v~~~~g~nP~WNE~-f~f~v~~---~~~~L~~eV~~~   82 (198)
                      ++++|-|+|..|++|+..++. ...|.||.+.+..  ..++|.|-.++ .||.||.. |+|++++   +.+.|.|.++|+
T Consensus         1 mpgkl~vki~a~r~lpvmdkasd~tdafveik~~n--~t~ktdvf~ks-lnp~wnsdwfkfevddadlqdeplqi~lld~   77 (1169)
T KOG1031|consen    1 MPGKLGVKIKAARHLPVMDKASDLTDAFVEIKFAN--TTFKTDVFLKS-LNPQWNSDWFKFEVDDADLQDEPLQIRLLDH   77 (1169)
T ss_pred             CCCcceeEEEeccCCcccccccccchheeEEEecc--cceehhhhhhh-cCCcccccceEEecChhhhccCCeeEEEecc
Confidence            468999999999999876654 4679999999998  88999998887 99999987 9999975   357899999999


Q ss_pred             CCCCCCCCCCCCCceeEEEEEeCccccCCC-----CCCCceEeEEEEeeCCCCCccEEEEEEEEEee
Q 040360           83 SKSSSSGNNNNHNKIVGFARIPVSDFIGGY-----APENYLHFLSYRLRNAKGDKNGIINVSVRSLK  144 (198)
Q Consensus        83 ~~~~~~g~~~~~d~~IG~a~IpL~~l~~~~-----~~~~~~~~~sy~L~~~~Gk~~G~I~lsi~~f~  144 (198)
                      +.   ..    .++-||.+.|.+..|.-..     ...+..-..|+++.+.-...+|+|++-++ +.
T Consensus        78 dt---ys----andaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdtihgirgeinvivk-vd  136 (1169)
T KOG1031|consen   78 DT---YS----ANDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDTIHGIRGEINVIVK-VD  136 (1169)
T ss_pred             cc---cc----cccccceeeeccChHHHHhHHhhhcCCceEEeeeeecceecccccceeEEEEE-Ee
Confidence            87   44    2889999999998775332     11234567899999876678999999888 65

>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=98.73  E-value=3.5e-09  Score=100.40  Aligned_cols=94  Identities=18%  Similarity=0.211  Sum_probs=80.9

Q ss_pred             eEEEEEEEEeeCCCCCCCCCcCCcEEEEEECCC-----CcEEEeeeecCCCCCCeeeeEEEEEecCC-----CcEEEEEE
Q 040360           10 RTIELTVLSGEDLRIDRRLIKKNAFAIVQTDTS-----FDYCTTKVDESGGSHPSWNEKLVIELPMH-----ARFITVQV   79 (198)
Q Consensus        10 ~~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~-----~~~~~T~v~~~~g~nP~WNE~f~f~v~~~-----~~~L~~eV   79 (198)
                      .+|.|.|+.|+|+-.-+.+|-.||||+|.+.+.     -..++|+|+.++ .||+++|.|.|.|+.+     ..-|.|+|
T Consensus       947 q~L~veVlhA~diipLD~NGlSDPFVviEl~P~~~fp~v~~q~T~V~~rt-LnPVfDE~FeFsVp~e~c~te~Am~~FTV 1025 (1103)
T KOG1328|consen  947 QTLVVEVLHAKDIIPLDSNGLSDPFVVIELIPKFRFPAVPVQKTKVVSRT-LNPVFDETFEFSVPPEPCSTETAMLHFTV 1025 (1103)
T ss_pred             cchhhhhhccccccccCCCCCCCCeEEEEeccccccccchhhhhhhhhcc-ccchhhhheeeecCccccccccceEEEEe
Confidence            578899999999987788899999999999983     235699999987 9999999999999864     35799999


Q ss_pred             EeCCCCCCCCCCCCCCceeEEEEEeCccccCC
Q 040360           80 QCKSKSSSSGNNNNHNKIVGFARIPVSDFIGG  111 (198)
Q Consensus        80 ~~~~~~~~~g~~~~~d~~IG~a~IpL~~l~~~  111 (198)
                      +|++.   +..    ++|-|+|.+-|.++.+-
T Consensus      1026 MDHD~---L~s----NDFaGEA~L~Lg~vpGv 1050 (1103)
T KOG1328|consen 1026 MDHDY---LRS----NDFAGEAFLELGDVPGV 1050 (1103)
T ss_pred             eccce---ecc----cccchHHHHhhCCCCCc
Confidence            99998   553    89999999999988643

>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=98.54  E-value=2.7e-08  Score=94.55  Aligned_cols=131  Identities=15%  Similarity=0.240  Sum_probs=95.7

Q ss_pred             eEEEEEEEEeeCCCCCCCCCcCCcEEEEEECCCC-----------------------------cEEEeeeecCCCCCCee
Q 040360           10 RTIELTVLSGEDLRIDRRLIKKNAFAIVQTDTSF-----------------------------DYCTTKVDESGGSHPSW   60 (198)
Q Consensus        10 ~~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~~-----------------------------~~~~T~v~~~~g~nP~W   60 (198)
                      -.|.|.++.|+||-.++..|..||||...+-+..                             --+.|.|.+.+ .||.|
T Consensus       114 ~~l~is~~~ak~l~akd~ngfSdP~~m~g~~p~~~~~~~pra~~eqrdgl~~~~~~~GpiPAKlIkatsvk~~T-LnPkW  192 (1103)
T KOG1328|consen  114 VLLNISLLEAKDLIAKDVNGFSDPFAMMGVVPGTRKENSPRALHEQRDGLMHRFQDTGPIPAKLIKATSVKKKT-LNPKW  192 (1103)
T ss_pred             HHHHHHHHHhcCccccCCCCCCChhhhhccccccccccChhhhhhhhhhhhhccccCCCCcHHHhhhccccccc-CCcch
Confidence            4477888899999888888999999988775410                             01245566665 99999


Q ss_pred             eeEEEEEecC-CCcEEEEEEEeCCCCC--------------CCC------------CCCCC---CceeEEEEEeCccccC
Q 040360           61 NEKLVIELPM-HARFITVQVQCKSKSS--------------SSG------------NNNNH---NKIVGFARIPVSDFIG  110 (198)
Q Consensus        61 NE~f~f~v~~-~~~~L~~eV~~~~~~~--------------~~g------------~~~~~---d~~IG~a~IpL~~l~~  110 (198)
                      +|+|.|.+.+ ....+++.|||++...              +-|            .-|++   |+|||-+.|||+|+..
T Consensus       193 ~EkF~F~IeDv~tDqfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d~tDDFLGciNipl~EiP~  272 (1103)
T KOG1328|consen  193 SEKFQFTIEDVQTDQFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDDCTDDFLGCINIPLAEIPP  272 (1103)
T ss_pred             hhheeeehhccccceeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCccccccccccccchhcCCc
Confidence            9999999975 5678999999965310              000            01233   8999999999999976


Q ss_pred             CCCCCCceEeEEEEeeCCC--CCccEEEEEEEEEeeeCCc
Q 040360          111 GYAPENYLHFLSYRLRNAK--GDKNGIINVSVRSLKVAAD  148 (198)
Q Consensus       111 ~~~~~~~~~~~sy~L~~~~--Gk~~G~I~lsi~~f~~~~~  148 (198)
                      .+.      ..||.|...+  .+..|.++|.++ +...++
T Consensus       273 ~Gl------d~WFkLepRS~~S~VqG~~~Lklw-LsT~e~  305 (1103)
T KOG1328|consen  273 DGL------DQWFKLEPRSDKSKVQGQVKLKLW-LSTKEE  305 (1103)
T ss_pred             chH------HHHhccCcccccccccceEEEEEE-Eeeecc
Confidence            542      2477776544  468999999999 877654

>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]

Probab=98.31  E-value=6.3e-07  Score=88.84  Aligned_cols=106  Identities=21%  Similarity=0.194  Sum_probs=84.6

Q ss_pred             ceEEEEEEEEeeCCCCCCCCCcCCcEEEEEECCC---CcEEEeeeecCCCCCCeeeeEEEEE-ecC---CCcEEEEEEEe
Q 040360            9 YRTIELTVLSGEDLRIDRRLIKKNAFAIVQTDTS---FDYCTTKVDESGGSHPSWNEKLVIE-LPM---HARFITVQVQC   81 (198)
Q Consensus         9 ~~~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~---~~~~~T~v~~~~g~nP~WNE~f~f~-v~~---~~~~L~~eV~~   81 (198)
                      .++|-|.|..|++|..-.....+||||+..+-++   ..+.||+|.+++ .||.+||.+... .+.   .++.|.+.|+.
T Consensus      1523 ~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt-~~PTfnE~LvY~g~p~~~l~qReLQ~sVls 1601 (1639)
T KOG0905|consen 1523 NGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKT-RNPTFNEMLVYDGFPKEILQQRELQVSVLS 1601 (1639)
T ss_pred             CceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhcccccc-CCCchhhheeecCCchhhhhhheeeeeeec
Confidence            4789999999999965555567999999999986   356799999987 999999999877 443   35899999999


Q ss_pred             CCCCCCCCCCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEeeC
Q 040360           82 KSKSSSSGNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRN  127 (198)
Q Consensus        82 ~~~~~~~g~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~  127 (198)
                      .+.   +-.    +.++|.+.|||.++--..  +   ...||+|..
T Consensus      1602 ~~~---~~e----n~~lg~v~i~L~~~~l~k--E---~~~Wy~lg~ 1635 (1639)
T KOG0905|consen 1602 NGG---LLE----NVFLGGVNIPLLKVDLLK--E---SVGWYNLGA 1635 (1639)
T ss_pred             ccc---eee----eeeeeeeecchhhcchhh--h---hcceeeccc
Confidence            876   442    889999999999885432  1   236998853

>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]

Probab=98.22  E-value=3e-06  Score=80.50  Aligned_cols=118  Identities=19%  Similarity=0.177  Sum_probs=81.4

Q ss_pred             EEEEeeCCCCCCCCCcCCcEEEEEECCC--CcEEEeeeecCCCCCCeeeeEEEEEecCC----------------CcEEE
Q 040360           15 TVLSGEDLRIDRRLIKKNAFAIVQTDTS--FDYCTTKVDESGGSHPSWNEKLVIELPMH----------------ARFIT   76 (198)
Q Consensus        15 tVlsA~~L~~~~~~~~~dpYvvv~~~~~--~~~~~T~v~~~~g~nP~WNE~f~f~v~~~----------------~~~L~   76 (198)
                      .+++++++-.. ..+.+||||+|...+.  .+..+|++.+.+ .+|.|||.|.|++..+                ...|.
T Consensus       136 ~~L~~r~~~P~-~~~~~dp~~~v~~~g~~~~~~~~T~~~kkt-~~p~~~Ev~~f~~~~~~~~s~ks~~~~~~e~~~l~ir  213 (800)
T KOG2059|consen  136 HVLKTRQGLPI-INGQCDPFARVTLCGPSKLKEKKTKVKKKT-TNPQFDEVFYFEVTREESYSKKSLFMPEEEDDMLEIR  213 (800)
T ss_pred             hhhhhcccCce-eCCCCCcceEEeecccchhhccccceeeec-cCcchhhheeeeeccccccccchhcCcccCCceeeEE
Confidence            34555555322 2355999999998873  123588988886 9999999999998653                24688


Q ss_pred             EEEEeCCCCCCCCCCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEeeCC-CC------CccEEEEEEEEEeeeC
Q 040360           77 VQVQCKSKSSSSGNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRNA-KG------DKNGIINVSVRSLKVA  146 (198)
Q Consensus        77 ~eV~~~~~~~~~g~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~~-~G------k~~G~I~lsi~~f~~~  146 (198)
                      +++|+... .+.+     +.|+|+.+||+..+.....+     ..||.|... +|      .--|.+.+.++ ...+
T Consensus       214 v~lW~~~~-~~~~-----~~FlGevrv~v~~~~~~s~p-----~~W~~Lqp~~~g~~~~~~~~lGslrl~v~-y~~D  278 (800)
T KOG2059|consen  214 VDLWNDLN-LVIN-----DVFLGEVRVPVDVLRQKSSP-----AAWYYLQPRPNGEKSSDGGDLGSLRLNVT-YTED  278 (800)
T ss_pred             Eeeccchh-hhhh-----hhhceeEEeehhhhhhccCc-----cceEEEecCCCcccCCCCCCccceeeeEE-eeec
Confidence            88887432 1223     89999999999988744433     358888762 33      23577777777 6555

>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]

Probab=98.21  E-value=5.9e-06  Score=80.20  Aligned_cols=112  Identities=21%  Similarity=0.267  Sum_probs=85.9

Q ss_pred             eEEEEEEEEeeCCCCCCCCCcCCcEEEEEECCC-----CcEEEeeeecCCCCCCeeeeE-EEEE-e-cCCCcEEEEEEEe
Q 040360           10 RTIELTVLSGEDLRIDRRLIKKNAFAIVQTDTS-----FDYCTTKVDESGGSHPSWNEK-LVIE-L-PMHARFITVQVQC   81 (198)
Q Consensus        10 ~~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~-----~~~~~T~v~~~~g~nP~WNE~-f~f~-v-~~~~~~L~~eV~~   81 (198)
                      .+|.|+|+|++-|..    .+...||.|.+.+-     ...++|++..+++.||+|||. |.|. | -++-.+|.|-||+
T Consensus       703 ~t~sV~VISgqFLSd----rkvgtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lRiavye  778 (1189)
T KOG1265|consen  703 ATLSVTVISGQFLSD----RKVGTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASLRIAVYE  778 (1189)
T ss_pred             eeEEEEEEeeeeccc----cccCceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccchhheeeeeec
Confidence            689999999999963    24569999999862     356899999999999999996 7775 2 2335799999997


Q ss_pred             CCCCCCCCCCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEeeCCCCCc----cEEEEEEEEEeee
Q 040360           82 KSKSSSSGNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRNAKGDK----NGIINVSVRSLKV  145 (198)
Q Consensus        82 ~~~~~~~g~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~~~Gk~----~G~I~lsi~~f~~  145 (198)
                      +      |     .++||.--+|+..|..|+        ....||.+.+++    .-.|.+.++ -+.
T Consensus       779 E------g-----gK~ig~RIlpvd~l~~GY--------rhv~LRse~Nqpl~lp~Lfv~i~~k-dyv  826 (1189)
T KOG1265|consen  779 E------G-----GKFIGQRILPVDGLNAGY--------RHVCLRSESNQPLTLPALFVYIVLK-DYV  826 (1189)
T ss_pred             c------C-----CceeeeeccchhcccCcc--------eeEEecCCCCCccccceeEEEEEee-ccC
Confidence            4      3     579999999999998886        244677776664    445666665 443

>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins

Probab=98.11  E-value=4.1e-06  Score=64.99  Aligned_cols=109  Identities=12%  Similarity=0.217  Sum_probs=75.4

Q ss_pred             EEEEEEEeeCCCCC-------CC------CCcCCcEEEEEEC--CCCcEEEeeeecCCCCCCeeeeEEEEEecC------
Q 040360           12 IELTVLSGEDLRID-------RR------LIKKNAFAIVQTD--TSFDYCTTKVDESGGSHPSWNEKLVIELPM------   70 (198)
Q Consensus        12 LeVtVlsA~~L~~~-------~~------~~~~dpYvvv~~~--~~~~~~~T~v~~~~g~nP~WNE~f~f~v~~------   70 (198)
                      |.|.|+.|.+|+.-       +.      .-..++||++++.  +..+..+|++..++ -.|.||..+.|.++.      
T Consensus         1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~e~r~TrtVArS-FcPeF~Hh~Efpc~lv~~~~~   79 (143)
T cd08683           1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEKELRRTRTVARS-FCPEFNHHVEFPCNLVVQRNS   79 (143)
T ss_pred             CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCCceeeccchhhh-cCCCccceEEEecccEEEcCC
Confidence            46788889888631       11      1246899999953  33577899999887 999999999999872      


Q ss_pred             ----------CCcEEEEEEEeCCCCCCCC---CCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEe
Q 040360           71 ----------HARFITVQVQCKSKSSSSG---NNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRL  125 (198)
Q Consensus        71 ----------~~~~L~~eV~~~~~~~~~g---~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L  125 (198)
                                +...+.|+||++...+..+   -++-+|=+||.++||+.+|+.....    -..||++
T Consensus        80 Ge~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~rsG----itGW~pi  143 (143)
T cd08683          80 GEAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTKRSG----ITGWYPI  143 (143)
T ss_pred             CccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhcccC----ccccccC
Confidence                      1358999999976411110   0011367799999999999976532    2357753

C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc

>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]

Probab=98.02  E-value=5.4e-06  Score=74.92  Aligned_cols=126  Identities=14%  Similarity=0.175  Sum_probs=93.6

Q ss_pred             cceEEEEEEEEeeCCCCCCCCCcCCcEEEEEECC---CCcEEEeeeecCCCCCCeeeeEEEEEecCC------------C
Q 040360            8 GYRTIELTVLSGEDLRIDRRLIKKNAFAIVQTDT---SFDYCTTKVDESGGSHPSWNEKLVIELPMH------------A   72 (198)
Q Consensus         8 ~~~~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~---~~~~~~T~v~~~~g~nP~WNE~f~f~v~~~------------~   72 (198)
                      ....|+++|+++.++......-..|.|+.+.+--   +.++.+|.++++. .+|.++|.|.+.+..+            .
T Consensus       365 ~d~elel~ivrg~~~pvp~gp~hld~fvr~efpl~nD~~qk~kt~vik~t-~SPdfde~fklni~rg~~~nr~fqR~fkr  443 (523)
T KOG3837|consen  365 KDQELELAIVRGQKNPVPGGPMHLDQFVRLEFPLENDSRQKLKTDVIKVT-PSPDFDEDFKLNIRRGPGLNREFQRRFKR  443 (523)
T ss_pred             chhHhHHHHhhcccCCCCCCchhHHhhhcccccccccccccCccceeeCC-CCCCcccceeeeccCCCcccHHHHHHHHh
Confidence            3456889999999997654444568888877642   1467789999987 8999999999988541            1


Q ss_pred             cEEEEEEEeCCCCCCCCCCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEeeCCCCCccEEEEEEEEEeeeC
Q 040360           73 RFITVQVQCKSKSSSSGNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRNAKGDKNGIINVSVRSLKVA  146 (198)
Q Consensus        73 ~~L~~eV~~~~~~~~~g~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~~~Gk~~G~I~lsi~~f~~~  146 (198)
                      .-+.||||++..  |+.    .|+++|.+.|-|.-|...-     ..+..|.|.|.....-|+|.+.+| +..+
T Consensus       444 ~g~kfeifhkgg--f~r----Sdkl~gt~nikle~Len~c-----ei~e~~~l~DGRK~vGGkLevKvR-iR~P  505 (523)
T KOG3837|consen  444 LGKKFEIFHKGG--FNR----SDKLTGTGNIKLEILENMC-----EICEYLPLKDGRKAVGGKLEVKVR-IRQP  505 (523)
T ss_pred             cCeeEEEeeccc--ccc----ccceeceeeeeehhhhccc-----chhhceeccccccccCCeeEEEEE-Eecc
Confidence            369999999987  444    3999999999998775432     234588888643336789999988 7644

>PLN02964 phosphatidylserine decarboxylase

Probab=97.92  E-value=2e-05  Score=75.49  Aligned_cols=86  Identities=21%  Similarity=0.360  Sum_probs=70.4

Q ss_pred             eEEEEEEEEeeCCCCCCCCCcCCcE-EEEEECCCCcEEEeeeecCCCCCCeeeeEEEEEecC-CCcEEEEEEEeCCCCCC
Q 040360           10 RTIELTVLSGEDLRIDRRLIKKNAF-AIVQTDTSFDYCTTKVDESGGSHPSWNEKLVIELPM-HARFITVQVQCKSKSSS   87 (198)
Q Consensus        10 ~~LeVtVlsA~~L~~~~~~~~~dpY-vvv~~~~~~~~~~T~v~~~~g~nP~WNE~f~f~v~~-~~~~L~~eV~~~~~~~~   87 (198)
                      +.+.|||++|+ +.      ..|+| +.++++.  +.++|.+.+++ .||+|||...|.|.. +..+.+|.|++.+.   
T Consensus        54 ~~~~~~~~~~~-~~------~~~~~~~~~~~g~--~~f~t~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~---  120 (644)
T PLN02964         54 GIALLTLVGAE-MK------FKDKWLACVSFGE--QTFRTETSDST-DKPVWNSEKKLLLEKNGPHLARISVFETNR---  120 (644)
T ss_pred             CeEEEEeehhh-hc------cCCcEEEEEEecc--eeeeecccccc-CCcccchhhceEeccCCcceEEEEEEecCC---
Confidence            78899999998 32      24777 5666666  99999999987 999999999888854 44578999999887   


Q ss_pred             CCCCCCCCceeEEEEEeCccccCCC
Q 040360           88 SGNNNNHNKIVGFARIPVSDFIGGY  112 (198)
Q Consensus        88 ~g~~~~~d~~IG~a~IpL~~l~~~~  112 (198)
                      +.+    ++++|.+.++|.+|....
T Consensus       121 ~s~----n~lv~~~e~~~t~f~~kq  141 (644)
T PLN02964        121 LSK----NTLVGYCELDLFDFVTQE  141 (644)
T ss_pred             CCH----HHhhhheeecHhhccHHH
Confidence            553    999999999999998664

>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.71  E-value=0.00014  Score=69.15  Aligned_cols=116  Identities=16%  Similarity=0.140  Sum_probs=84.1

Q ss_pred             eEEEEEEEEeeCCCCCCCCCcCCcEEEEEECCC-----CcEEEeeeecCCCCCCeeeeEEEEEecCC----CcEEEEEEE
Q 040360           10 RTIELTVLSGEDLRIDRRLIKKNAFAIVQTDTS-----FDYCTTKVDESGGSHPSWNEKLVIELPMH----ARFITVQVQ   80 (198)
Q Consensus        10 ~~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~-----~~~~~T~v~~~~g~nP~WNE~f~f~v~~~----~~~L~~eV~   80 (198)
                      ..+.|.|+.|.||+=. ..+--.|||.|.+-++     ..++.|++..++ -.|.+||+|.|-+..+    ...|.|+|+
T Consensus      1125 hkvtvkvvaandlkwq-tsgmFrPFVEV~ivGP~lsDKKRK~~TKtKsnn-WaPKyNEtF~f~Lg~e~~Pe~YEL~~~VK 1202 (1283)
T KOG1011|consen 1125 HKVTVKVVAANDLKWQ-TSGMFRPFVEVHIVGPHLSDKKRKFSTKTKSNN-WAPKYNETFHFFLGNEGGPEHYELQFCVK 1202 (1283)
T ss_pred             ceEEEEEEecccccch-hccccccceEEEEecCcccchhhhccccccCCC-cCcccCceeEEEeccCCCCceEEEEEeeh
Confidence            4678899999999732 2355699999998663     346788887765 8999999999999653    358999998


Q ss_pred             eCCCCCCCCCCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEeeCC-CCCccEEEEEE
Q 040360           81 CKSKSSSSGNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRNA-KGDKNGIINVS  139 (198)
Q Consensus        81 ~~~~~~~~g~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~~-~Gk~~G~I~ls  139 (198)
                      |+-.   ..    .|+.+|.+.++|+++.+.+.     --.|++|.+. .-...|-+-|.
T Consensus      1203 DYCF---AR----eDRvvGl~VlqL~~va~kGS-----~a~W~pLgrrihmDeTGLtiLR 1250 (1283)
T KOG1011|consen 1203 DYCF---AR----EDRVVGLAVLQLRSVADKGS-----CACWVPLGRRIHMDETGLTILR 1250 (1283)
T ss_pred             hhee---ec----ccceeeeeeeehhhHhhcCc-----eeEeeeccccccccccchhHHH
Confidence            8643   22    39999999999999987642     2368988652 22345544333

>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []

Probab=97.71  E-value=0.0034  Score=48.29  Aligned_cols=119  Identities=17%  Similarity=0.234  Sum_probs=79.7

Q ss_pred             EEEEEEEEeeCCCCCCCCCcCCcEEEEEECCCCc--EEEeeeecCCCCCCeeeeEEEEEecC---------CCcEEEEEE
Q 040360           11 TIELTVLSGEDLRIDRRLIKKNAFAIVQTDTSFD--YCTTKVDESGGSHPSWNEKLVIELPM---------HARFITVQV   79 (198)
Q Consensus        11 ~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~~~--~~~T~v~~~~g~nP~WNE~f~f~v~~---------~~~~L~~eV   79 (198)
                      .+.|+|.+..++..    .....||.+.-+. ..  ..+|.........-.|||.|.+.+..         +...+.|.|
T Consensus         8 ~~~l~i~~l~~~p~----~~~~v~v~wkr~~-~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~~v   82 (143)
T PF10358_consen    8 QFDLTIHELENLPS----SNGKVFVKWKRGD-KSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKFSV   82 (143)
T ss_pred             EEEEEEEEeECcCC----CCCEEEEEEEECC-CCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEEEE
Confidence            57889999999974    2345566666655 22  34555444334678899999988742         134788999


Q ss_pred             EeCCCCCCCCCCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEeeCCCCCccEEEEEEEEEeeeC
Q 040360           80 QCKSKSSSSGNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRNAKGDKNGIINVSVRSLKVA  146 (198)
Q Consensus        80 ~~~~~~~~~g~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~~~Gk~~G~I~lsi~~f~~~  146 (198)
                      +....   .++    ...||++.|.|++++...   .......|.|... -+.+.+|+|+|. +..-
T Consensus        83 ~~~~~---~~~----k~~lG~~~inLaey~~~~---~~~~~~~~~l~~~-~~~~a~L~isi~-~~~~  137 (143)
T PF10358_consen   83 FEVDG---SGK----KKVLGKVSINLAEYANED---EEPITVRLLLKKC-KKSNATLSISIS-LSEL  137 (143)
T ss_pred             EEecC---CCc----cceEEEEEEEHHHhhCcC---CCcEEEEEeCccC-CCCCcEEEEEEE-EEEC
Confidence            88644   341    359999999999998753   1124567777654 356667888877 6644

Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).

>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function

Probab=97.68  E-value=0.00059  Score=51.27  Aligned_cols=97  Identities=20%  Similarity=0.248  Sum_probs=58.2

Q ss_pred             EEEEEECCCCcEEEeeeecCCCCCCeeeeEEEEEecCC--------CcEEEEEEEeCCCCCCCCCCCCCCceeEEEEEeC
Q 040360           34 FAIVQTDTSFDYCTTKVDESGGSHPSWNEKLVIELPMH--------ARFITVQVQCKSKSSSSGNNNNHNKIVGFARIPV  105 (198)
Q Consensus        34 Yvvv~~~~~~~~~~T~v~~~~g~nP~WNE~f~f~v~~~--------~~~L~~eV~~~~~~~~~g~~~~~d~~IG~a~IpL  105 (198)
                      ||++.+.. .+.+.|.+..  |.+|..|-+.++.|..+        ...|.||+...-.   ..     -+.||.++|+|
T Consensus         2 Fct~dFyd-fEtq~Tpvv~--G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa~g---~d-----~~tla~~~i~l   70 (107)
T PF11618_consen    2 FCTYDFYD-FETQTTPVVR--GLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQALG---SD-----FETLAAGQISL   70 (107)
T ss_dssp             EEEE-STT----EE---EE--SSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE-S---S------EEEEEEEEE--
T ss_pred             EEEEEeec-eeeeccccee--CCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEeecc---CC-----eEEEEEEEeec
Confidence            78888877 6788999987  58999999999988764        3689999976433   22     67899999999


Q ss_pred             ccccCCCCCCCceEeEEEEeeCCCCCccEEEEEEEEEeee
Q 040360          106 SDFIGGYAPENYLHFLSYRLRNAKGDKNGIINVSVRSLKV  145 (198)
Q Consensus       106 ~~l~~~~~~~~~~~~~sy~L~~~~Gk~~G~I~lsi~~f~~  145 (198)
                      .++++... +.  ...+..|.+.+|+.-|.|++.+| +..
T Consensus        71 ~~ll~~~~-~~--i~~~~~l~g~~~~~~g~l~y~~r-l~~  106 (107)
T PF11618_consen   71 RPLLESNG-ER--IHGSATLVGVSGEDFGTLEYWIR-LRV  106 (107)
T ss_dssp             SHHHH--S-----EEEEEEE-BSSS-TSEEEEEEEE-EEE
T ss_pred             hhhhcCCC-ce--EEEEEEEeccCCCeEEEEEEEEE-ecC
Confidence            99996531 12  34567788888899999999999 764

It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.

>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.68  E-value=6.4e-06  Score=72.47  Aligned_cols=96  Identities=19%  Similarity=0.196  Sum_probs=74.4

Q ss_pred             cceEEEEEEEEeeCCCCCCCCCcCCcEEEEEECCC---CcEEEeeeecCCCCCCeeeeEEEEEe--cC--CCcEEEEEEE
Q 040360            8 GYRTIELTVLSGEDLRIDRRLIKKNAFAIVQTDTS---FDYCTTKVDESGGSHPSWNEKLVIEL--PM--HARFITVQVQ   80 (198)
Q Consensus         8 ~~~~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~---~~~~~T~v~~~~g~nP~WNE~f~f~v--~~--~~~~L~~eV~   80 (198)
                      +++.|..||..|++|+..+..+..|||+...+.+-   ..+.+|++..++ .||.|||+.....  ..  +...+.+.|.
T Consensus        91 ~~~~~~~tl~~a~~lk~~~~~~~~d~~~~~~llpga~kl~slr~~t~~n~-lN~~w~etev~~~i~~~~~~~K~~Rk~vc  169 (362)
T KOG1013|consen   91 ESRMLDTTLDRAKGLKPMDINGLADPYVKLHLLPGAGKLNSLRTKTTRNT-LNPEWNETEVYEGITDDDTHLKVLRKVVC  169 (362)
T ss_pred             hhhhcceeechhcccchhhhhhhcchHHhhhcccchhhhhhhhHHhhccC-cCcceeccceecccccchhhhhhhheeec
Confidence            45789999999999998888899999999999873   245677887775 9999999877653  22  2345666665


Q ss_pred             eCCCCCCCCCCCCCCceeEEEEEeCccccCC
Q 040360           81 CKSKSSSSGNNNNHNKIVGFARIPVSDFIGG  111 (198)
Q Consensus        81 ~~~~~~~~g~~~~~d~~IG~a~IpL~~l~~~  111 (198)
                      ++..   +.    ++.++|+.+++|..+...
T Consensus       170 dn~~---~~----~~~sqGq~r~~lkKl~p~  193 (362)
T KOG1013|consen  170 DNDK---KT----HNESQGQSRVSLKKLKPL  193 (362)
T ss_pred             cCcc---cc----cccCcccchhhhhccChh
Confidence            6555   44    489999999999988654

>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]

Probab=97.57  E-value=4e-05  Score=75.31  Aligned_cols=90  Identities=9%  Similarity=0.097  Sum_probs=72.4

Q ss_pred             eEEEEEEEEeeCCCCCCCCCcCCcEEEEEECCCCcEEEeeeecCCCCCCeeeeEEEEEecC-CCcEEEEEEEeCCCCCCC
Q 040360           10 RTIELTVLSGEDLRIDRRLIKKNAFAIVQTDTSFDYCTTKVDESGGSHPSWNEKLVIELPM-HARFITVQVQCKSKSSSS   88 (198)
Q Consensus        10 ~~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~~~~~~T~v~~~~g~nP~WNE~f~f~v~~-~~~~L~~eV~~~~~~~~~   88 (198)
                      ..++|.|+.|-+|...+..++.|||+.+.++.....-+..-+.+. .||++++-|.+.... .+..|.++||+.+.   .
T Consensus       613 ~LvrVyvv~A~~L~p~D~ng~adpYv~l~lGk~~~~d~~~yip~t-lnPVfgkmfel~~~lp~ek~l~v~vyd~D~---~  688 (1105)
T KOG1326|consen  613 CLVRVYVVEAFSLQPSDGNGDADPYVKLLLGKKRTLDRAHYIPNT-LNPVFGKMFELECLLPFEKDLIVEVYDHDL---E  688 (1105)
T ss_pred             eeEEEEEEEeeeccccCCCCCcCceeeeeeccchhhhhhhcCcCC-CCcHHHHHHHhhcccchhhcceeEEEEeec---c
Confidence            457899999999998888999999999999982112344456666 999999988877543 35789999999987   5


Q ss_pred             CCCCCCCceeEEEEEeCcc
Q 040360           89 GNNNNHNKIVGFARIPVSD  107 (198)
Q Consensus        89 g~~~~~d~~IG~a~IpL~~  107 (198)
                      +    .|+.||+.+|.|..
T Consensus       689 ~----~d~~iget~iDLEn  703 (1105)
T KOG1326|consen  689 A----QDEKIGETTIDLEN  703 (1105)
T ss_pred             c----ccchhhceehhhhh
Confidence            5    39999999999874

>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.37  E-value=0.00035  Score=61.69  Aligned_cols=86  Identities=10%  Similarity=0.096  Sum_probs=69.2

Q ss_pred             ceEEEEEEEEeeCCCCCCCCCcCCcEEEEEECCC---CcEEEeeeecCCCCCCeeeeEEEEEecCC---CcEEEEEEEeC
Q 040360            9 YRTIELTVLSGEDLRIDRRLIKKNAFAIVQTDTS---FDYCTTKVDESGGSHPSWNEKLVIELPMH---ARFITVQVQCK   82 (198)
Q Consensus         9 ~~~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~---~~~~~T~v~~~~g~nP~WNE~f~f~v~~~---~~~L~~eV~~~   82 (198)
                      ..-|.|+++.+..|...+..+-.||||..++.++   ..+++|++.++. .||++||.|.|.+.+.   ...+.|.|++.
T Consensus       232 ~~~l~vt~iRc~~l~ssDsng~sDpyvS~~l~pdv~~~fkkKt~~~K~t-~~p~fd~~~~~~i~pgdLa~~kv~lsvgd~  310 (362)
T KOG1013|consen  232 TPGLIVTIIRCSHLASSDSNGYSDPYVSQRLSPDVGKKFKKKTQQKKKT-LNPEFDEEFFYDIGPGDLAYKKVALSVGDY  310 (362)
T ss_pred             CCceEEEEEEeeeeeccccCCCCCccceeecCCCcchhhcccCcchhcc-CCccccccccccCCccchhcceEEEeeccc
Confidence            3568999999999988888899999999999875   346789998887 9999999999999764   35788999887


Q ss_pred             CCCCCCCCCCCCCceeEEEE
Q 040360           83 SKSSSSGNNNNHNKIVGFAR  102 (198)
Q Consensus        83 ~~~~~~g~~~~~d~~IG~a~  102 (198)
                      +.    |+   -++++|-..
T Consensus       311 ~~----G~---s~d~~GG~~  323 (362)
T KOG1013|consen  311 DI----GK---SNDSIGGSM  323 (362)
T ss_pred             CC----Cc---CccCCCccc
Confidence            75    32   156776543

>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus)

Probab=97.36  E-value=0.00028  Score=51.58  Aligned_cols=87  Identities=11%  Similarity=0.158  Sum_probs=63.3

Q ss_pred             EEEEEEeeCCCCCC-CCCcCCcEEE--EEECCCCcEEEeeeecCCCCCCeeeeEEEEEecCC---CcEEEEEEEeCCCCC
Q 040360           13 ELTVLSGEDLRIDR-RLIKKNAFAI--VQTDTSFDYCTTKVDESGGSHPSWNEKLVIELPMH---ARFITVQVQCKSKSS   86 (198)
Q Consensus        13 eVtVlsA~~L~~~~-~~~~~dpYvv--v~~~~~~~~~~T~v~~~~g~nP~WNE~f~f~v~~~---~~~L~~eV~~~~~~~   86 (198)
                      =|||+.++||.-.. ....+.-|++  +.+.. ...++|.+.+.. .||+++|+|.|.+...   .-.|.|.|+....  
T Consensus         2 witv~~c~d~s~~~~~~e~~~i~ikg~~tl~k-pv~~KsS~rrgs-~d~~f~ETFVFqi~l~qL~~V~L~fsv~~~~~--   77 (103)
T cd08684           2 WITVLKCKDLSWPSSCGENPTIYIKGILTLPK-PVHFKSSAKEGS-NDIEFMETFVFAIKLQNLQTVRLVFKIQTQTP--   77 (103)
T ss_pred             EEEEEEecccccccccCcCCeeEEEEEEecCC-CccccchhhcCC-CChhHHHHHHHHHHHhhccceEEEEEeeccCC--
Confidence            38999999996422 2234566764  44444 345677766654 9999999999998653   4579999998543  


Q ss_pred             CCCCCCCCCceeEEEEEeCccccC
Q 040360           87 SSGNNNNHNKIVGFARIPVSDFIG  110 (198)
Q Consensus        87 ~~g~~~~~d~~IG~a~IpL~~l~~  110 (198)
                             +.+.||++.+.|.++-.
T Consensus        78 -------RKe~iG~~sL~l~s~ge   94 (103)
T cd08684          78 -------RKRTIGECSLSLRTLST   94 (103)
T ss_pred             -------ccceeeEEEeecccCCH
Confidence                   27899999999998854

Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos

>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.28  E-value=0.00024  Score=63.68  Aligned_cols=109  Identities=13%  Similarity=0.158  Sum_probs=82.3

Q ss_pred             ceEEEEEEEEeeCCCC-CCCCCcCCcEEEEEECCC---CcEEEeeeecCCCCCCeeeeEEEEEecCCCcEEEEEEEeC-C
Q 040360            9 YRTIELTVLSGEDLRI-DRRLIKKNAFAIVQTDTS---FDYCTTKVDESGGSHPSWNEKLVIELPMHARFITVQVQCK-S   83 (198)
Q Consensus         9 ~~~LeVtVlsA~~L~~-~~~~~~~dpYvvv~~~~~---~~~~~T~v~~~~g~nP~WNE~f~f~v~~~~~~L~~eV~~~-~   83 (198)
                      .+.|+|.|+.|++|.. ......++|||.|.+-+.   ..+.+|+...++ ..|.+-+.+.|.-+.....|.+.|+.. .
T Consensus       268 ~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT-~~plyqq~l~f~~sp~~k~Lq~tv~gdyg  346 (405)
T KOG2060|consen  268 KGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARKT-LDPLYQQQLSFDQSPPGKYLQGTVWGDYG  346 (405)
T ss_pred             cCceeEEEEecccccccCCcccccCceeEEEEcCCCceeccccccccccc-CchhhhhhhhhccCCCccEEEEEEecccc
Confidence            4789999999999964 233347899999999763   346788888876 566666678888877788999999953 3


Q ss_pred             CCCCCCCCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEeeCCC
Q 040360           84 KSSSSGNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRNAK  129 (198)
Q Consensus        84 ~~~~~g~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~~~  129 (198)
                      .   ..    ++.|+|.++|-|.||.-..    .+-..||+|...+
T Consensus       347 R---md----~k~fmg~aqi~l~eL~ls~----~~~igwyKlfgss  381 (405)
T KOG2060|consen  347 R---MD----HKSFMGVAQIMLDELNLSS----SPVIGWYKLFGSS  381 (405)
T ss_pred             c---cc----hHHHhhHHHHHhhhhcccc----ccceeeeeccCCc
Confidence            3   34    4889999999999996543    2346799987643

>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length

Probab=97.22  E-value=0.0085  Score=53.57  Aligned_cols=121  Identities=14%  Similarity=0.177  Sum_probs=89.8

Q ss_pred             EEEEEEEeeCCCCCCCCCcCCcEEEEEECCCCcEEEeeeecCCCCCCeeeeEEEEEecC--------CCcEEEEEEEeCC
Q 040360           12 IELTVLSGEDLRIDRRLIKKNAFAIVQTDTSFDYCTTKVDESGGSHPSWNEKLVIELPM--------HARFITVQVQCKS   83 (198)
Q Consensus        12 LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~~~~~~T~v~~~~g~nP~WNE~f~f~v~~--------~~~~L~~eV~~~~   83 (198)
                      +.|.|+.+++....   -+..-.+..++++  ....|...... ..|.||..+.++++.        +...|++++|--+
T Consensus         2 ivl~i~egr~F~~~---~~~~~vv~a~~ng--~~l~TDpv~~~-~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~   75 (340)
T PF12416_consen    2 IVLSILEGRNFPQR---PRHPIVVEAKFNG--ESLETDPVPHT-ESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVD   75 (340)
T ss_pred             EEEEEecccCCCCC---CCccEEEEEEeCC--ceeeecCCCCC-CCceeecceeeeccHHHHHHhhccCCceEEEEEEec
Confidence            56899999999743   2467789999998  78888866654 899999999999974        3468999999765


Q ss_pred             CCCCCCCCCCCCceeEEEEEeCccc---cCCCCCCCceEeEEEEeeCCCCC---ccEEEEEEEEEeeeCCc
Q 040360           84 KSSSSGNNNNHNKIVGFARIPVSDF---IGGYAPENYLHFLSYRLRNAKGD---KNGIINVSVRSLKVAAD  148 (198)
Q Consensus        84 ~~~~~g~~~~~d~~IG~a~IpL~~l---~~~~~~~~~~~~~sy~L~~~~Gk---~~G~I~lsi~~f~~~~~  148 (198)
                      .  ..+    ..+.||.+.++|..+   ..+.   ......||+|...+.+   .+=+|.+++. +..+..
T Consensus        76 ~--~~~----~re~iGyv~LdLRsa~~~~~~~---~~~~~~W~~LL~~~~~y~~~KPEl~l~l~-ie~~~~  136 (340)
T PF12416_consen   76 G--STG----KRESIGYVVLDLRSAVVPQEKN---QKQKPKWYKLLSSSSKYKKHKPELLLSLS-IEDDSK  136 (340)
T ss_pred             C--CCC----cceeccEEEEEccccccccccc---cccCCCeeEccccccccccCCccEEEEEE-Eecccc
Confidence            2  023    378999999999988   3331   1245679999986433   4557888888 776644

>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks)

Probab=97.16  E-value=0.0038  Score=50.56  Aligned_cols=71  Identities=13%  Similarity=0.085  Sum_probs=49.2

Q ss_pred             eEEEEEEEEeeCCCCCCCCCcCCcEEEEEECCCCc----EEEeeeecCCCCCCeeeeEEEEEecC----CCcEEEEEEEe
Q 040360           10 RTIELTVLSGEDLRIDRRLIKKNAFAIVQTDTSFD----YCTTKVDESGGSHPSWNEKLVIELPM----HARFITVQVQC   81 (198)
Q Consensus        10 ~~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~~~----~~~T~v~~~~g~nP~WNE~f~f~v~~----~~~~L~~eV~~   81 (198)
                      ..+.|+|+++++|..  .....+-||.+.+-...+    ...|+...- ..++.|||.+.|++.-    .+..|.|.||+
T Consensus         8 ~~f~i~i~~~~~~~~--~~~~~~l~V~~~lyhG~~~L~~p~~T~~~~~-~~~~~Wnewl~F~I~i~dLPr~ArLciti~~   84 (173)
T cd08693           8 EKFSITLHKISNLNA--AERTMKVGVQAGLFHGGESLCKTVKTSEVSG-KNDPVWNETLEFDINVCDLPRMARLCFAIYE   84 (173)
T ss_pred             CCEEEEEEEeccCcc--CCCCceEEEEEEEEECCEEccCceEccccCC-CCccccceeEEcccchhcCChhHeEEEEEEE
Confidence            579999999999975  223467788776654212    234544332 2679999999998753    25789999998


Q ss_pred             CC
Q 040360           82 KS   83 (198)
Q Consensus        82 ~~   83 (198)
                      ..
T Consensus        85 ~~   86 (173)
T cd08693          85 VS   86 (173)
T ss_pred             ec
Confidence            54

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty

>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks)

Probab=97.15  E-value=0.0037  Score=50.00  Aligned_cols=90  Identities=11%  Similarity=0.192  Sum_probs=58.3

Q ss_pred             eEEEEEEEEeeCCCCCCCCCcCCcEEEEEECCCCcE----EEeeeecCCCCCCeeeeEEEEEecC----CCcEEEEEEEe
Q 040360           10 RTIELTVLSGEDLRIDRRLIKKNAFAIVQTDTSFDY----CTTKVDESGGSHPSWNEKLVIELPM----HARFITVQVQC   81 (198)
Q Consensus        10 ~~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~~~~----~~T~v~~~~g~nP~WNE~f~f~v~~----~~~~L~~eV~~   81 (198)
                      +.++|+|++++++....   ..|-||.+++-...+.    ..|+-..  ..++.|||-+.|++.-    .++.|.|.||+
T Consensus         8 ~~~~v~i~~~~~~~~~~---~~~l~V~v~l~~g~~~L~~pv~T~~v~--~~~~~WnEwL~fpI~i~dLPr~ArL~iti~~   82 (158)
T cd08398           8 SNLRIKILCATYVNVND---IDKIYVRTGIYHGGEPLCDNVNTQRVP--CSNPRWNEWLDYDIYIPDLPRSARLCLSICS   82 (158)
T ss_pred             CCeEEEEEeeccCCCCC---cCeEEEEEEEEECCEEccCeeEecccC--CCCCccceeEEcccchhcCChhheEEEEEEE
Confidence            57899999999997532   3588888877552122    2333222  2689999999998743    25789999998


Q ss_pred             CCCCCCCCCCCCCCceeEEEEEeCcc
Q 040360           82 KSKSSSSGNNNNHNKIVGFARIPVSD  107 (198)
Q Consensus        82 ~~~~~~~g~~~~~d~~IG~a~IpL~~  107 (198)
                      ...   ......+...||.+.++|=+
T Consensus        83 ~~~---~~~~k~~~~~iG~~ni~LFd  105 (158)
T cd08398          83 VKG---RKGAKEEHCPLAWGNINLFD  105 (158)
T ss_pred             Eec---ccCCCCceEEEEEEEEEEEC
Confidence            643   11000013457888777755

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c

>PF15627 CEP76-C2: CEP76 C2 domain

Probab=96.79  E-value=0.044  Score=43.83  Aligned_cols=127  Identities=17%  Similarity=0.227  Sum_probs=90.1

Q ss_pred             CCcceEEEEEEEEeeCCCCC--C--CCCcCCcEEEEEECCCCcEEEeeeecCCCCCCeeeeEEEEEecCC----------
Q 040360            6 SSGYRTIELTVLSGEDLRID--R--RLIKKNAFAIVQTDTSFDYCTTKVDESGGSHPSWNEKLVIELPMH----------   71 (198)
Q Consensus         6 ~m~~~~LeVtVlsA~~L~~~--~--~~~~~dpYvvv~~~~~~~~~~T~v~~~~g~nP~WNE~f~f~v~~~----------   71 (198)
                      .-..+-|.|.|+.++-.-..  .  ...+.--++-+.+.+  ++++|+.+... .+|.++|.|.|+++.+          
T Consensus         5 ~~~~~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f~~--QRF~S~~Vp~~-~eP~f~e~Flf~l~~~~~~~~~~~~~   81 (156)
T PF15627_consen    5 DPGRRYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHFRG--QRFRSKPVPCA-CEPDFNEEFLFELPRDSFGAGSTATT   81 (156)
T ss_pred             CCCceEEEEEEeCchhHhhhhhccCCCCceEEEEEEEecC--ceEecCCcccc-cCCCCCCcEEEEecccccccccchhH
Confidence            34456799999999877421  1  122333455566666  99999988886 9999999999999753          


Q ss_pred             ----CcEEEEEEEeCCCCCCCCCCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEeeCCCCC---ccEEEEEEEEEee
Q 040360           72 ----ARFITVQVQCKSKSSSSGNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRNAKGD---KNGIINVSVRSLK  144 (198)
Q Consensus        72 ----~~~L~~eV~~~~~~~~~g~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~~~Gk---~~G~I~lsi~~f~  144 (198)
                          ...|++-|.-.+.   .+    ..+++|+-.+.=..++...  ... .....+|......   +.|.|++.+. +.
T Consensus        82 lls~~~pihivli~~d~---~~----~~~Lv~s~~ldWR~vL~s~--~~~-~~~~vEL~G~~~e~kv~~GiL~l~lE-Ll  150 (156)
T PF15627_consen   82 LLSISDPIHIVLIRTDP---SG----ETTLVGSHFLDWRKVLCSG--NGS-TSFTVELCGVGPESKVPVGILDLRLE-LL  150 (156)
T ss_pred             hhcCCCceEEEEEEecC---CC----ceEeeeeceehHHHHhccC--CCc-cceeEEEeccCCCCccceeEEEEEEE-ee
Confidence                1468888877665   44    2689999999888887653  211 1467778775544   8999999999 76


Q ss_pred             eC
Q 040360          145 VA  146 (198)
Q Consensus       145 ~~  146 (198)
                      +.
T Consensus       151 P~  152 (156)
T PF15627_consen  151 PN  152 (156)
T ss_pred             cC
Confidence            54

>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks)

Probab=96.79  E-value=0.016  Score=45.65  Aligned_cols=92  Identities=14%  Similarity=0.230  Sum_probs=59.5

Q ss_pred             eEEEEEEEEeeCCCCCCCCCcCCcEEEEEECCCC----cEEEeeeecCCCCCCeeeeEEEEEecC----CCcEEEEEEEe
Q 040360           10 RTIELTVLSGEDLRIDRRLIKKNAFAIVQTDTSF----DYCTTKVDESGGSHPSWNEKLVIELPM----HARFITVQVQC   81 (198)
Q Consensus        10 ~~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~~----~~~~T~v~~~~g~nP~WNE~f~f~v~~----~~~~L~~eV~~   81 (198)
                      ..+.|+|....++... .....+-||.+++-...    ....|+.... ..++.|||.+.|++.-    .+..|.|.||+
T Consensus         8 ~~~~i~i~~~~~~~~~-~~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~-~~~~~Wne~l~F~i~~~~LP~~arL~itl~~   85 (156)
T cd08380           8 FNLRIKIHGITNINLL-DSEDLKLYVRVQLYHGGEPLCPPQSTKKVPF-STSVTWNEWLTFDILISDLPREARLCLSIYA   85 (156)
T ss_pred             CCeEEEEEeecccccc-CCCceeEEEEEEEEECCEEccCceeccCCcC-CCCCcccceeEccchhhcCChhheEEEEEEE
Confidence            4688889998888641 12346778877665421    1224443332 2689999999998642    25789999998


Q ss_pred             CCCCCCCCCCCCCCceeEEEEEeCccc
Q 040360           82 KSKSSSSGNNNNHNKIVGFARIPVSDF  108 (198)
Q Consensus        82 ~~~~~~~g~~~~~d~~IG~a~IpL~~l  108 (198)
                      ...   .+  +.++..||++.++|=+.
T Consensus        86 ~~~---~~--~~~~~~iG~~~~~lFd~  107 (156)
T cd08380          86 VSE---PG--SKKEVPLGWVNVPLFDY  107 (156)
T ss_pred             Eec---CC--CCcceEEEEEeEEeEcc
Confidence            654   22  00157889888888553

C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm

>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins

Probab=96.77  E-value=0.017  Score=42.42  Aligned_cols=66  Identities=15%  Similarity=0.218  Sum_probs=51.0

Q ss_pred             CcCCcEEEEEECCCCcEEEeeeecCCCCCCeeeeEEEEEecCCCcEEEEEEEeCCCCCCCCCCCCCCceeEEEEEeCccc
Q 040360           29 IKKNAFAIVQTDTSFDYCTTKVDESGGSHPSWNEKLVIELPMHARFITVQVQCKSKSSSSGNNNNHNKIVGFARIPVSDF  108 (198)
Q Consensus        29 ~~~dpYvvv~~~~~~~~~~T~v~~~~g~nP~WNE~f~f~v~~~~~~L~~eV~~~~~~~~~g~~~~~d~~IG~a~IpL~~l  108 (198)
                      +..+..|++.+++ .....|.-...  .+..||++|.|+++. ++.|.|.||-++.          ..+=|...+.|.|.
T Consensus         7 ~~~eV~avLklDn-~~VgqT~Wk~~--s~q~WDQ~Fti~LdR-sRELEI~VywrD~----------RslCav~~lrLEd~   72 (98)
T cd08687           7 GCSEVSAVLKLDN-TVVGQTQWKPK--SNQAWDQSFTLELER-SRELEIAVYWRDW----------RSLCAVKFLKLEDE   72 (98)
T ss_pred             cccceEEEEEEcC-eEEeecccccc--ccccccceeEEEeec-ccEEEEEEEEecc----------hhhhhheeeEhhhh
Confidence            3468889999998 55566665443  488999999999987 5899999998876          23667778888884

PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct

>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks)

Probab=96.51  E-value=0.012  Score=47.35  Aligned_cols=77  Identities=12%  Similarity=0.018  Sum_probs=51.4

Q ss_pred             cceEEEEEEEEeeCCCCCCCCCcCCcEEEEEECCCCc----EEEeeeec--C-CCCCCeeeeEEEEEecC----CCcEEE
Q 040360            8 GYRTIELTVLSGEDLRIDRRLIKKNAFAIVQTDTSFD----YCTTKVDE--S-GGSHPSWNEKLVIELPM----HARFIT   76 (198)
Q Consensus         8 ~~~~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~~~----~~~T~v~~--~-~g~nP~WNE~f~f~v~~----~~~~L~   76 (198)
                      ....+.|+|.++.++.........|-|+.+++-...+    ...|+...  + -...+.|||.+.|++.-    .+..|.
T Consensus         6 v~~~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~   85 (171)
T cd04012           6 VTDLLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLV   85 (171)
T ss_pred             ccccEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEE
Confidence            3467999999999998665444578888887754212    22443221  1 11367799999998742    257899


Q ss_pred             EEEEeCCC
Q 040360           77 VQVQCKSK   84 (198)
Q Consensus        77 ~eV~~~~~   84 (198)
                      |.+|+...
T Consensus        86 itl~~~~~   93 (171)
T cd04012          86 LTLYGTTS   93 (171)
T ss_pred             EEEEEEec
Confidence            99998653

There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c

>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]

Probab=96.25  E-value=0.011  Score=52.40  Aligned_cols=116  Identities=14%  Similarity=0.208  Sum_probs=77.2

Q ss_pred             ceEEEEEEEEeeCCCCCC--CCCcCCcEEEEEECCCCcEEEeeeecCCCCCCeeeeEEEEEecCCCcEEEEEEEeCCCCC
Q 040360            9 YRTIELTVLSGEDLRIDR--RLIKKNAFAIVQTDTSFDYCTTKVDESGGSHPSWNEKLVIELPMHARFITVQVQCKSKSS   86 (198)
Q Consensus         9 ~~~LeVtVlsA~~L~~~~--~~~~~dpYvvv~~~~~~~~~~T~v~~~~g~nP~WNE~f~f~v~~~~~~L~~eV~~~~~~~   86 (198)
                      +|.|-++++.+++|+...  +....+-||++.++. ..+.+|.+... +.-=.|.|+|.+++-. ...|.+-||.+..  
T Consensus        50 tGiL~~H~~~GRGLr~~p~~kglt~~~ycVle~dr-qh~aRt~vrs~-~~~f~w~e~F~~Dvv~-~~vl~~lvySW~p--  124 (442)
T KOG1452|consen   50 TGILYFHAYNGRGLRMTPQQKGLTVCFYCVLEPDR-QHPARTRVRSS-GPGFAWAEDFKHDVVN-IEVLHYLVYSWPP--  124 (442)
T ss_pred             cceEEEEEecccccccChhccCceeeeeeeeeecc-cCccccccccC-CCCccchhhceeeccc-ceeeeEEEeecCc--
Confidence            589999999999998643  345678999999998 45667766543 4667799999988865 4689999998875  


Q ss_pred             CCCCCCCCCce--eEEEEEeCccccCCCCCCCceEeEEEEeeCCCCCccEEEEEEEEEeeeC
Q 040360           87 SSGNNNNHNKI--VGFARIPVSDFIGGYAPENYLHFLSYRLRNAKGDKNGIINVSVRSLKVA  146 (198)
Q Consensus        87 ~~g~~~~~d~~--IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~~~Gk~~G~I~lsi~~f~~~  146 (198)
                       -.    +.|+  .|  .|.+.-+... .++   +.+.+.     -+++|.+-+.+. |.++
T Consensus       125 -q~----RHKLC~~g--~l~~~~v~rq-spd---~~~Al~-----lePrgq~~~r~~-~~Dp  169 (442)
T KOG1452|consen  125 -QR----RHKLCHLG--LLEAFVVDRQ-SPD---RVVALY-----LEPRGQPPLRLP-LADP  169 (442)
T ss_pred             -hh----hccccccc--hhhhhhhhhc-CCc---ceeeee-----cccCCCCceecc-cCCh
Confidence             22    1444  34  2222222222 122   222332     367888888888 7765

>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A

Probab=96.20  E-value=0.045  Score=44.31  Aligned_cols=59  Identities=20%  Similarity=0.339  Sum_probs=34.8

Q ss_pred             cEEEeeeecCCCCCCeeeeEEEEEecCC---CcEEEEEEEeCCCCCCCCCCCCCCceeEEEEEeCcc
Q 040360           44 DYCTTKVDESGGSHPSWNEKLVIELPMH---ARFITVQVQCKSKSSSSGNNNNHNKIVGFARIPVSD  107 (198)
Q Consensus        44 ~~~~T~v~~~~g~nP~WNE~f~f~v~~~---~~~L~~eV~~~~~~~~~g~~~~~d~~IG~a~IpL~~  107 (198)
                      ..+.|.|.... .+|.|+|+|.+.||..   ...|.|++++....  .++  .+++.+|.+-+||-+
T Consensus        59 ~~~~S~v~yh~-k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~--~~~--~~~~~~g~a~lpL~~  120 (184)
T PF14429_consen   59 TSYYSSVYYHN-KNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCK--ESK--EKSKPFGYAFLPLMD  120 (184)
T ss_dssp             S-EE----TT--SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---S--SSS---SS-EEEEEEEESB-
T ss_pred             eEEEEEEEecC-CCCCccEEEEEEcCchhcccEEEEEEEEeeccc--ccc--CccceeEEEEEEeee
Confidence            34566666665 8999999999999864   46899999986541  110  012799999999998

>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins

Probab=96.10  E-value=0.23  Score=41.23  Aligned_cols=59  Identities=12%  Similarity=0.313  Sum_probs=42.1

Q ss_pred             cEEEeeeecCCCCCCeeeeEEEEEecCC---CcEEEEEEEeCCCCCCCCCCCCCCceeEEEEEeCc
Q 040360           44 DYCTTKVDESGGSHPSWNEKLVIELPMH---ARFITVQVQCKSKSSSSGNNNNHNKIVGFARIPVS  106 (198)
Q Consensus        44 ~~~~T~v~~~~g~nP~WNE~f~f~v~~~---~~~L~~eV~~~~~~~~~g~~~~~d~~IG~a~IpL~  106 (198)
                      ..++|-|.... .+|.|||++.+.||.+   ...|.|++++....  ..+ +...+.+|.+-+||-
T Consensus        53 se~~S~V~Yh~-~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S~~--~~k-d~~e~pfg~s~lpL~  114 (196)
T cd08694          53 DEYKSVIYYQV-DKPKWFETFKVAIPIEDFKSSHLRFTFKHRSSN--EAK-DKSEKPFALSFVKLM  114 (196)
T ss_pred             eeEEEEEEeec-CCCCCceeEEEecChhhCCCeEEEEEEEeeccc--ccc-CCCCCceEEEEEeee
Confidence            45677775544 7999999999999863   57899999886430  111 001367999999996

Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>KOG1327 consensus Copine [Signal transduction mechanisms]

Probab=96.05  E-value=0.014  Score=54.78  Aligned_cols=84  Identities=15%  Similarity=0.244  Sum_probs=62.0

Q ss_pred             EEeeCCCCCCCCCcCCcEEEEEEC--CC--CcEEEeeeecCCCCCCeeeeEEEEEec-----CCCcEEEEEEEeCCCCCC
Q 040360           17 LSGEDLRIDRRLIKKNAFAIVQTD--TS--FDYCTTKVDESGGSHPSWNEKLVIELP-----MHARFITVQVQCKSKSSS   87 (198)
Q Consensus        17 lsA~~L~~~~~~~~~dpYvvv~~~--~~--~~~~~T~v~~~~g~nP~WNE~f~f~v~-----~~~~~L~~eV~~~~~~~~   87 (198)
                      ..|+.|..++.+++.|||..+.--  ..  ...++|.+.+++ ++|.|-+ |.+.+.     ...+.+.++++|.+.   
T Consensus       143 ~~~~~ld~kd~f~ksd~~l~~~~~~~d~s~~~~~~tEv~~n~-l~p~w~~-~~i~~~~l~~~~~~~~~~i~~~d~~~---  217 (529)
T KOG1327|consen  143 FRAKNLDPKDFFSKSDPYLEFYKRVDDGSTQMLYRTEVVKNT-LNPQWAP-FSISLQSLCSKDGNRPIQIECYDYDS---  217 (529)
T ss_pred             eeeeecCcccccccCCcceEEEEecCCCceeeccccceeccC-CCCcccc-cccchhhhcccCCCCceEEEEeccCC---
Confidence            336667667788999999765432  21  235688888887 9999987 444432     235789999999887   


Q ss_pred             CCCCCCCCceeEEEEEeCcccc
Q 040360           88 SGNNNNHNKIVGFARIPVSDFI  109 (198)
Q Consensus        88 ~g~~~~~d~~IG~a~IpL~~l~  109 (198)
                      .++    +++||++..++.++.
T Consensus       218 ~~~----~~~ig~~~tt~~~~~  235 (529)
T KOG1327|consen  218 NGK----HDLIGKFQTTLSELQ  235 (529)
T ss_pred             CCC----cCceeEecccHHHhc
Confidence            663    799999999999885

>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks)

Probab=96.03  E-value=0.076  Score=43.35  Aligned_cols=71  Identities=14%  Similarity=0.229  Sum_probs=44.9

Q ss_pred             eEEEEEEEEeeCCCCCCCCCcCCcEEEEEECCCCc---EEEeeeecCCCCCCeeeeEEEEEecC----CCcEEEEEEEeC
Q 040360           10 RTIELTVLSGEDLRIDRRLIKKNAFAIVQTDTSFD---YCTTKVDESGGSHPSWNEKLVIELPM----HARFITVQVQCK   82 (198)
Q Consensus        10 ~~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~~~---~~~T~v~~~~g~nP~WNE~f~f~v~~----~~~~L~~eV~~~   82 (198)
                      ..++|+|++++.+... ......-||.+.+-...+   ..+|....- +.++.|||-+.|++.-    .+..|.|.||+.
T Consensus        10 ~~friki~~~~~~~~~-~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~-~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~   87 (178)
T cd08399          10 RKFRVKILGIDIPVLP-RNTDLTVFVEANIQHGQQVLCQRRTSPKPF-TEEVLWNTWLEFDIKIKDLPKGALLNLQIYCG   87 (178)
T ss_pred             CCEEEEEEeecccCcC-CCCceEEEEEEEEEECCeecccceeeccCC-CCCccccccEECccccccCChhhEEEEEEEEE
Confidence            5688999999855422 222345666665543211   224443333 3689999999988743    257899999985

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir

>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins

Probab=95.92  E-value=0.2  Score=41.26  Aligned_cols=58  Identities=19%  Similarity=0.427  Sum_probs=43.0

Q ss_pred             cEEEeeeecCCCCCCeeeeEEEEEecCC---CcEEEEEEEeCCCCCCCCCCCCCCceeEEEEEeCcc
Q 040360           44 DYCTTKVDESGGSHPSWNEKLVIELPMH---ARFITVQVQCKSKSSSSGNNNNHNKIVGFARIPVSD  107 (198)
Q Consensus        44 ~~~~T~v~~~~g~nP~WNE~f~f~v~~~---~~~L~~eV~~~~~~~~~g~~~~~d~~IG~a~IpL~~  107 (198)
                      ..++|-|.... .+|.|||++.+.||.+   ...|.|++++...   ..+  ...+.+|.+-+||-+
T Consensus        53 se~~S~V~yH~-~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S~---~~k--~~~~pfg~s~lpL~~  113 (189)
T cd08695          53 SEYRSFVLYHN-NSPRWNETIKLPIPIDKFRGSHLRFEFRHCST---KDK--GEKKLFGFSFVPLMR  113 (189)
T ss_pred             ceEEEEEEEcC-CCCCCceeEEEecChhhCCCeeEEEEEEEeee---ccC--CCCCceEEEEEeecc
Confidence            45677777665 7999999999999863   5789999988643   111  013789999999953

Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int

>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]

Probab=95.89  E-value=0.002  Score=63.75  Aligned_cols=113  Identities=12%  Similarity=0.102  Sum_probs=84.0

Q ss_pred             EEEEEEEeeCCCCCCCCCcCCcEEEEEECCCCcEEEeeeecCCCCCCeeeeEEEEEe---cCC-------CcEEEEEEEe
Q 040360           12 IELTVLSGEDLRIDRRLIKKNAFAIVQTDTSFDYCTTKVDESGGSHPSWNEKLVIEL---PMH-------ARFITVQVQC   81 (198)
Q Consensus        12 LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~~~~~~T~v~~~~g~nP~WNE~f~f~v---~~~-------~~~L~~eV~~   81 (198)
                      |++.|-+|+.|...++.+..|||+.|.+-+  +.+.|-+..++ .||.||+++.|.-   ..+       -..+.||||+
T Consensus       208 lR~yiyQar~L~a~dk~~~sdp~a~v~f~~--qs~~T~~v~~t-l~ptwdq~~~f~~~ei~ge~~~~~~~ppi~v~e~yd  284 (1105)
T KOG1326|consen  208 LRSYIYQARALGAPDKDDESDPDAAVEFCG--QSKETEVVPGT-LNPTWDQTIIFDEVEIYGEAHLVLKNPPIRVFEVYD  284 (1105)
T ss_pred             hHHHHHHHHhhcCCCcccCCCchhhhhccc--ccceeEeecCc-CCCCccceeeccceeecCccchhhcCCCeEEEEeeh
Confidence            445567788887777778899999999988  78899999886 9999999999852   221       1478999999


Q ss_pred             CCCCCCCCCCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEeeCCCCCccEEEEEEEE
Q 040360           82 KSKSSSSGNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRNAKGDKNGIINVSVR  141 (198)
Q Consensus        82 ~~~~~~~g~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~~~Gk~~G~I~lsi~  141 (198)
                      .+.   .++    ++++|.......=..+-  |    +..|+++.+ .+...|.+.++..
T Consensus       285 ~dr---~g~----~ef~gr~~~~p~V~~~~--p----~lkw~p~~r-g~~l~gd~l~a~e  330 (1105)
T KOG1326|consen  285 LDR---SGI----NEFKGRKKQRPYVMVQC--P----ALKWVPTMR-GAFLDGDVLIAAE  330 (1105)
T ss_pred             hhh---hch----HHhhcccccceEEEecC--C----ccceEEeec-ccccccchhHHHH
Confidence            988   774    99999876665534331  2    235777764 4567788777764

>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks)

Probab=95.65  E-value=0.047  Score=43.67  Aligned_cols=71  Identities=14%  Similarity=0.158  Sum_probs=48.1

Q ss_pred             CcCCcEEEEEECCCCcE----EEeeeecCCCCCCeeeeEEEEEecC----CCcEEEEEEEeCCCCCCCCCCCCCCceeEE
Q 040360           29 IKKNAFAIVQTDTSFDY----CTTKVDESGGSHPSWNEKLVIELPM----HARFITVQVQCKSKSSSSGNNNNHNKIVGF  100 (198)
Q Consensus        29 ~~~dpYvvv~~~~~~~~----~~T~v~~~~g~nP~WNE~f~f~v~~----~~~~L~~eV~~~~~~~~~g~~~~~d~~IG~  100 (198)
                      ...|-||.+++-...+.    ..|+...- +..+.|||-+.|++.-    .++.|.|+||+...   .+    +...||.
T Consensus        28 ~~~~l~V~~~l~~~~~~L~~pv~T~~~~f-~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~---~~----~~~~vg~   99 (159)
T cd08397          28 PNSDLFVTCQVFDDGKPLTLPVQTSYKPF-KNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSG---TG----KAVPFGG   99 (159)
T ss_pred             CCCCEEEEEEEEECCEeccCcEEccccCC-CCCcccceeEEcccchhcCChhheEEEEEEEecC---CC----CceEEEE
Confidence            35788988877652122    24433332 3678899999998743    25799999999764   33    2668898


Q ss_pred             EEEeCcc
Q 040360          101 ARIPVSD  107 (198)
Q Consensus       101 a~IpL~~  107 (198)
                      +.++|=+
T Consensus       100 ~~~~lFd  106 (159)
T cd08397         100 TTLSLFN  106 (159)
T ss_pred             EEEeeEC
Confidence            8888744

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty

>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2

Probab=95.33  E-value=0.22  Score=38.54  Aligned_cols=70  Identities=16%  Similarity=0.270  Sum_probs=43.1

Q ss_pred             CcEEEEEECCC----C-cEEEeeeecCCCCCCeeeeEEEEEecC----CCcEEEEEEEeCCCCCCCCCCCCCC----cee
Q 040360           32 NAFAIVQTDTS----F-DYCTTKVDESGGSHPSWNEKLVIELPM----HARFITVQVQCKSKSSSSGNNNNHN----KIV   98 (198)
Q Consensus        32 dpYvvv~~~~~----~-~~~~T~v~~~~g~nP~WNE~f~f~v~~----~~~~L~~eV~~~~~~~~~g~~~~~d----~~I   98 (198)
                      +-||.+++-..    . ....|+...-+-.++.|||.+.|++.-    .+..|.|.|+....   ...    +    ..|
T Consensus         3 ~~~V~~~ly~g~~~L~~p~~~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~---~~~----~~~~~~~l   75 (142)
T PF00792_consen    3 KLYVECQLYHGGEPLCNPVQSTSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDS---KKK----SKKKKVPL   75 (142)
T ss_dssp             EEEEEEEEEETTEESS-EEEE-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEEC---STT----T--EEEEE
T ss_pred             eEEEEEEEEECCEEeecCeeeccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecC---CCc----cccceeEE
Confidence            34555555432    1 122455443222699999999998742    36799999998654   221    3    689


Q ss_pred             EEEEEeCccc
Q 040360           99 GFARIPVSDF  108 (198)
Q Consensus        99 G~a~IpL~~l  108 (198)
                      |++.++|=+.
T Consensus        76 gw~n~~lFd~   85 (142)
T PF00792_consen   76 GWVNLPLFDY   85 (142)
T ss_dssp             EEEEEESB-T
T ss_pred             EEEEEEeECC
Confidence            9999988665

7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....

>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins

Probab=94.93  E-value=0.13  Score=41.47  Aligned_cols=57  Identities=21%  Similarity=0.378  Sum_probs=40.5

Q ss_pred             EEeeeecCCCCCCeeeeEEEEEecCC---CcEEEEEEEeCCCCCCCCC-CCCCCceeEEEEEeCcc
Q 040360           46 CTTKVDESGGSHPSWNEKLVIELPMH---ARFITVQVQCKSKSSSSGN-NNNHNKIVGFARIPVSD  107 (198)
Q Consensus        46 ~~T~v~~~~g~nP~WNE~f~f~v~~~---~~~L~~eV~~~~~~~~~g~-~~~~d~~IG~a~IpL~~  107 (198)
                      ++|-+. .. .+|.|+|+|.+.||..   ...|.|++++...   ..+ ++...+.+|.+-+||-+
T Consensus        55 ~~sv~~-~~-k~p~f~deiKi~LP~~l~~~~HLlFtf~hv~~---~~~~~~~~~~~~g~a~lpL~~  115 (178)
T cd08679          55 YTSVVY-YH-KNPVFNDEIKIQLPADLTPQHHLLFTFYHVSS---KKKQGDKEETPFGYAFLPLMD  115 (178)
T ss_pred             EEEEEE-cC-CCCCCceeEEEecCCccCCCeEEEEEEEcccc---ccccCCCccceEEEEEEeccc
Confidence            344444 44 7999999999999863   5689999998653   110 11236789999999986

Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo

>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins

Probab=94.47  E-value=0.18  Score=41.25  Aligned_cols=60  Identities=15%  Similarity=0.271  Sum_probs=42.7

Q ss_pred             cEEEeeeecCCCCCCeeeeEEEEEecCC---CcEEEEEEEeCCCCCCCCC--CCCCCceeEEEEEeCcc
Q 040360           44 DYCTTKVDESGGSHPSWNEKLVIELPMH---ARFITVQVQCKSKSSSSGN--NNNHNKIVGFARIPVSD  107 (198)
Q Consensus        44 ~~~~T~v~~~~g~nP~WNE~f~f~v~~~---~~~L~~eV~~~~~~~~~g~--~~~~d~~IG~a~IpL~~  107 (198)
                      ....|.|...+ .+|.|+|+|.+.||..   ...|.|+.++...   ..+  ++...+.+|.+-+||-+
T Consensus        54 ~~~~S~V~yHn-k~P~f~DEiKi~LP~~l~~~hHLlFtF~Hvs~---~~k~~~~~~e~~~Gys~lPL~~  118 (179)
T cd08696          54 TEAYTAVTYHN-KSPDFYDEIKIKLPADLTDNHHLLFTFYHISC---QKKQEGGSVETPIGYTWLPLLR  118 (179)
T ss_pred             eeEEEEEEEeC-CCCcccceEEEEcCCCCCCCeEEEEEEEEeec---cccccCCCccceEEEEEEeeec
Confidence            45677776665 8999999999999863   4689999988543   111  01124679999999964

Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand

>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain

Probab=93.84  E-value=0.39  Score=35.12  Aligned_cols=73  Identities=11%  Similarity=0.092  Sum_probs=47.3

Q ss_pred             eEEEEEEEEeeCCCCCCCCCcCCcEEEEEECCCCc----EEEeeeecCCCCCCeeeeEEEEEecC----CCcEEEEEEEe
Q 040360           10 RTIELTVLSGEDLRIDRRLIKKNAFAIVQTDTSFD----YCTTKVDESGGSHPSWNEKLVIELPM----HARFITVQVQC   81 (198)
Q Consensus        10 ~~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~~~----~~~T~v~~~~g~nP~WNE~f~f~v~~----~~~~L~~eV~~   81 (198)
                      +.+.+++...+++.........+-||.+++-...+    ...|+... ....+.|||-+.|++.-    .+..|.|.||+
T Consensus        11 ~~~~~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~~-~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~   89 (100)
T smart00142       11 RNLVITIALIHGIPLNWSRDYSDLYVEIQLYHGGKLLCLPVSTSYKP-FFPSVKWNEWLTFPIQISDLPREARLCITIYE   89 (100)
T ss_pred             CceEEEEEEeeCCCcccccCcceEEEEEEEEECCEEccCcEEecccC-CCCCcccceeEEccCchhcCChhhEEEEEEEE
Confidence            34677888888886544332348888887754212    22344332 23568999999998743    25789999997


Q ss_pred             CC
Q 040360           82 KS   83 (198)
Q Consensus        82 ~~   83 (198)
                      ..
T Consensus        90 ~~   91 (100)
T smart00142       90 VK   91 (100)
T ss_pred             ee
Confidence            53

Outlier of C2 family.

>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins

Probab=93.21  E-value=0.5  Score=38.82  Aligned_cols=63  Identities=17%  Similarity=0.294  Sum_probs=43.5

Q ss_pred             cEEEeeeecCCCCCCeeeeEEEEEecCC---CcEEEEEEEeCCCCCCCC--CCCCCCceeEEEEEeCcc
Q 040360           44 DYCTTKVDESGGSHPSWNEKLVIELPMH---ARFITVQVQCKSKSSSSG--NNNNHNKIVGFARIPVSD  107 (198)
Q Consensus        44 ~~~~T~v~~~~g~nP~WNE~f~f~v~~~---~~~L~~eV~~~~~~~~~g--~~~~~d~~IG~a~IpL~~  107 (198)
                      ....|.|...+ .+|.|+|++.+.||.+   ...|.|+.++........  +++...+.+|.+-+||-+
T Consensus        56 ~~~~s~V~yh~-k~P~f~dEiKI~LP~~l~~~hHLlFtFyHvsc~~~~k~~~~~~~e~~~Gys~lPLl~  123 (185)
T cd08697          56 TSAYAAVLHHN-QNPEFYDEIKIELPTQLHEKHHLLFTFYHVSCDINKKGKKKDGVETPVGYAWLPLLK  123 (185)
T ss_pred             eEEEEEEEEcC-CCCccceeEEEecCCcCCCCeeEEEEEEeeccccccccccCCCccceEEEEEEeeec
Confidence            35567777666 8999999999999863   468999999865200000  111124679999999976

Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande

>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain

Probab=93.04  E-value=0.66  Score=37.23  Aligned_cols=74  Identities=12%  Similarity=0.122  Sum_probs=56.6

Q ss_pred             CcCCcEEEEEECCCCcEEEeeeecC-CCCCCeeeeEEEEEecCCCcEEEEEEEeCCCCCCCCCCCCCCceeEEEEEeCcc
Q 040360           29 IKKNAFAIVQTDTSFDYCTTKVDES-GGSHPSWNEKLVIELPMHARFITVQVQCKSKSSSSGNNNNHNKIVGFARIPVSD  107 (198)
Q Consensus        29 ~~~dpYvvv~~~~~~~~~~T~v~~~-~g~nP~WNE~f~f~v~~~~~~L~~eV~~~~~~~~~g~~~~~d~~IG~a~IpL~~  107 (198)
                      .+..-|++|.+++ ....+|+...- ....=.+||.|.+.+..-=+.|.++||....   ..     +.+|+++.||+..
T Consensus        35 ~~~~~~ikl~~N~-k~V~~T~~~~l~~dF~v~f~~~f~v~i~~~Pesi~l~i~E~~~---~~-----~~~la~v~vpvP~  105 (168)
T PF15625_consen   35 QKTRYYIKLFFND-KEVSRTRSRPLWSDFRVHFNEIFNVQITRWPESIKLEIYEKSG---LS-----DRLLAEVFVPVPG  105 (168)
T ss_pred             hheeEEEEEEECC-EEEEeeeeEecCCCeEEeccCEEEEEEecCCCEEEEEEEEccC---cc-----ceEEEEEEeeCCC
Confidence            4567899999998 56667765443 3356669999999986544789999998765   45     8999999999987


Q ss_pred             ccCC
Q 040360          108 FIGG  111 (198)
Q Consensus       108 l~~~  111 (198)
                      ....
T Consensus       106 ~~~~  109 (168)
T PF15625_consen  106 STVH  109 (168)
T ss_pred             Cccc
Confidence            6544

>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]

Probab=92.07  E-value=0.49  Score=46.98  Aligned_cols=89  Identities=16%  Similarity=0.172  Sum_probs=69.2

Q ss_pred             CCcEEEEEECCCCcEEEeeeecCCCCCCeeeeEEEEEecCCCcEEEEEEEeCCCCCCCCCCCCCCceeEEEEEeCccccC
Q 040360           31 KNAFAIVQTDTSFDYCTTKVDESGGSHPSWNEKLVIELPMHARFITVQVQCKSKSSSSGNNNNHNKIVGFARIPVSDFIG  110 (198)
Q Consensus        31 ~dpYvvv~~~~~~~~~~T~v~~~~g~nP~WNE~f~f~v~~~~~~L~~eV~~~~~~~~~g~~~~~d~~IG~a~IpL~~l~~  110 (198)
                      +++|+++.+.. ..-.+|....+.-.+|.|.+.|.+.....+..+.+.|.+.+.   .|    ..+.+|.++++.-.+..
T Consensus       138 ~e~Ylt~~l~~-~~~~~t~~~~~f~e~s~~~f~~~~~~~h~~g~v~~~~~~~~~---~G----~s~~w~~v~~s~~~~~~  209 (887)
T KOG1329|consen  138 LENYLTVVLHK-ARYRRTHVIYEFLENSRWSFSFDIGFAHKAGYVIFRVKGARV---PG----WSKRWGRVKISFLQYCS  209 (887)
T ss_pred             ccchheeeech-hhhhchhhhhcccccchhhhhccccccccccEEEEeecCCcc---cc----ceeEEEEeccchhhhhc
Confidence            48999999987 344567666655589999999988887778899999988776   66    27899999999999988


Q ss_pred             CCCCCCceEeEEEEeeCCCCCc
Q 040360          111 GYAPENYLHFLSYRLRNAKGDK  132 (198)
Q Consensus       111 ~~~~~~~~~~~sy~L~~~~Gk~  132 (198)
                      +...     ..+|.+.+.++++
T Consensus       210 ~~~~-----~~~~~Il~~d~~~  226 (887)
T KOG1329|consen  210 GHRI-----GGWFPILDNDGKP  226 (887)
T ss_pred             cccc-----cceeeeeccCCcc
Confidence            7432     3578877766653

>PTZ00447 apical membrane antigen 1-like protein; Provisional

Probab=88.51  E-value=8.9  Score=34.84  Aligned_cols=97  Identities=14%  Similarity=0.141  Sum_probs=67.6

Q ss_pred             cCCcEEEEEECCCCcEEEeeeecCCCCCC-eeeeEEEEEecCCCcEEEEEEEeCCCCCCCCCCCCCCceeEEEEEeCc-c
Q 040360           30 KKNAFAIVQTDTSFDYCTTKVDESGGSHP-SWNEKLVIELPMHARFITVQVQCKSKSSSSGNNNNHNKIVGFARIPVS-D  107 (198)
Q Consensus        30 ~~dpYvvv~~~~~~~~~~T~v~~~~g~nP-~WNE~f~f~v~~~~~~L~~eV~~~~~~~~~g~~~~~d~~IG~a~IpL~-~  107 (198)
                      ...-|+.++.|.  ..++|..+..+-.+- .=.|...+.+..-...|++.+|-+..   .+     ..-||.+.|.+. +
T Consensus        73 ~khiyIef~~Gr--~d~TT~~IpTsKK~RI~IqqRV~IkIRQcDnTLkI~lfKKkL---vk-----k~hIgdI~InIn~d  142 (508)
T PTZ00447         73 YKHIYIIFSTDK--YDFTTDEIPTNKKNRIHIDQRVDIKIRQCDETLRVDLFTTKL---TK-----KVHIGQIKIDINAS  142 (508)
T ss_pred             ceeEEEEEEcCc--eEEEccccccCcCceEEEeeeeeeeeeecCceEEEEEEeccc---cc-----eeEEEEEEecccHH
Confidence            467899999988  666774333221222 23344444444434689999998764   45     788999999998 5


Q ss_pred             ccCCCCCCCceEeEEEEeeCCCCCccEEEEEEEE
Q 040360          108 FIGGYAPENYLHFLSYRLRNAKGDKNGIINVSVR  141 (198)
Q Consensus       108 l~~~~~~~~~~~~~sy~L~~~~Gk~~G~I~lsi~  141 (198)
                      +..+..|.    ..||-+. ++|+..+.|.||+.
T Consensus       143 IIdk~FPK----nkWy~c~-kDGq~~cRIqLSFh  171 (508)
T PTZ00447        143 VISKSFPK----NEWFVCF-KDGQEICKVQMSFY  171 (508)
T ss_pred             HHhccCCc----cceEEEe-cCCceeeeEEEEeh
Confidence            66665554    4699884 68999999999976

>PF06219 DUF1005: Protein of unknown function (DUF1005); InterPro: IPR010410 This is a family of plant proteins with undetermined function

Probab=88.23  E-value=16  Score=33.87  Aligned_cols=115  Identities=17%  Similarity=0.205  Sum_probs=65.9

Q ss_pred             cCCcEEEEEECCCCcEEEeee--ecCCCCCC--eeeeEEEEEecCC--------------CcEEEEEEEeCCCCCCCCCC
Q 040360           30 KKNAFAIVQTDTSFDYCTTKV--DESGGSHP--SWNEKLVIELPMH--------------ARFITVQVQCKSKSSSSGNN   91 (198)
Q Consensus        30 ~~dpYvvv~~~~~~~~~~T~v--~~~~g~nP--~WNE~f~f~v~~~--------------~~~L~~eV~~~~~~~~~g~~   91 (198)
                      ....||.|++.+ ...+++.+  ......++  .=+-.-.|.|+..              ...|.|.||.-.....-|..
T Consensus        35 sspCfC~IrL~~-fP~Qta~vPLi~~~~~~~p~~~~~Aa~F~Ld~s~l~~l~~~~~f~~~~~~L~i~VY~Gr~G~tCGv~  113 (460)
T PF06219_consen   35 SSPCFCEIRLKG-FPSQTAPVPLISSSEPEPPDSHSLAASFHLDKSDLRRLLAKPCFYSPRPCLEISVYTGRRGSTCGVG  113 (460)
T ss_pred             CCCeEEEEecCC-CCccceeeeeccCCCCCCCCcCCcceEEecCHHHHHHHhCCCccccCCceEEEEEEECCCCCccccc
Confidence            457899999988 44433332  22222232  1222345556431              14699999973321111210


Q ss_pred             CCCCceeEEEEEeCccccCCCCCCCceEeEEEEeeCCCC----CccEEEEEEEEEeeeCCc
Q 040360           92 NNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRNAKG----DKNGIINVSVRSLKVAAD  148 (198)
Q Consensus        92 ~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~~~G----k~~G~I~lsi~~f~~~~~  148 (198)
                       +..++||.++|||. +.........++..|..|-..+.    ...-+|||.++ .+++++
T Consensus       114 -~~~klLG~v~vpld-l~~ae~kp~v~hnGWi~iGk~~~~~~~~~~aeLHl~Vr-~EpDPR  171 (460)
T PF06219_consen  114 -NSGKLLGKVRVPLD-LKWAEGKPVVFHNGWISIGKNKQGSGKSPSAELHLVVR-AEPDPR  171 (460)
T ss_pred             -ccceEEEEEEEEec-cccccCCeeEEEccceecCCCCCCCCCCCcceEEEEEe-ccCCCe
Confidence             12689999999997 43322223356777888876432    23568999999 887744

>PF14924 DUF4497: Protein of unknown function (DUF4497)

Probab=88.22  E-value=2.3  Score=31.76  Aligned_cols=68  Identities=15%  Similarity=0.189  Sum_probs=45.3

Q ss_pred             cEEEEEEEeCCCCCCCCCCCCCCceeEEEEEeCccccCCC---------CCCCceEeEEEEeeCCCCCccEEEEEEEEEe
Q 040360           73 RFITVQVQCKSKSSSSGNNNNHNKIVGFARIPVSDFIGGY---------APENYLHFLSYRLRNAKGDKNGIINVSVRSL  143 (198)
Q Consensus        73 ~~L~~eV~~~~~~~~~g~~~~~d~~IG~a~IpL~~l~~~~---------~~~~~~~~~sy~L~~~~Gk~~G~I~lsi~~f  143 (198)
                      ..|++.++..-......    ...+||.+.|++.+....-         .+........|.|+++.|+..|+|.+.+| +
T Consensus        29 ~pl~i~~~~~~~~~~~~----~~~liG~~~i~l~~~~~~i~~~~~~~~~~p~s~~~k~~f~L~~~~~~~~G~I~l~iR-L  103 (112)
T PF14924_consen   29 FPLYIVVKKVPPGFPTP----PPMLIGSCPISLAEAFNRILKDSAECNGQPSSKTIKGTFPLFDENGNPVGEISLYIR-L  103 (112)
T ss_pred             CceEEEEEecCCCCCCC----ccceeeEEEecHHHHHHHHHHHHHhhccCCCchhhcceeEeecCCCceeeeEEEEEE-E
Confidence            46777665432100012    2678999999999876221         11222345689999999999999999999 7


Q ss_pred             ee
Q 040360          144 KV  145 (198)
Q Consensus       144 ~~  145 (198)
                      ..
T Consensus       104 sc  105 (112)
T PF14924_consen  104 SC  105 (112)
T ss_pred             ec
Confidence            53

>PF07162 B9-C2: Ciliary basal body-associated, B9 protein; InterPro: IPR010796 Proteins in this entry include the MSK1 protein (Q9NXB0 from SWISSPROT) and other known or predicted flagellar basal body proteome components [] or cilia-containing species

Probab=85.00  E-value=15  Score=29.28  Aligned_cols=82  Identities=13%  Similarity=0.176  Sum_probs=56.3

Q ss_pred             EEEEEEeeCCCCCCCCCcCCcEEEEEECC--C------Cc-EEEeeeecCC----CCCCeeeeEEEEEecCC----CcEE
Q 040360           13 ELTVLSGEDLRIDRRLIKKNAFAIVQTDT--S------FD-YCTTKVDESG----GSHPSWNEKLVIELPMH----ARFI   75 (198)
Q Consensus        13 eVtVlsA~~L~~~~~~~~~dpYvvv~~~~--~------~~-~~~T~v~~~~----g~nP~WNE~f~f~v~~~----~~~L   75 (198)
                      .-.|.+|++..      ..+-||...+.-  +      .. ...|.+....    +..-.||.-|.+.+...    -..|
T Consensus         5 ~G~I~~a~~f~------~~~l~~~y~~~~g~~W~~~~g~~~~G~Tq~~~~~~~~~~~~~~f~~P~d~~~~~~~~~gwP~L   78 (168)
T PF07162_consen    5 IGEIESAEGFE------EDNLYCRYQLVHGPDWKLISGLSLEGQTQISKSSSYGNDDVAVFNHPFDLHFKSTNPQGWPQL   78 (168)
T ss_pred             EEEEEEEECCC------CCCEEEEEEEEeCCCeEECCCCcceEEcceeecCcccCCCceEEeccEEEEEEeCCCCCCceE
Confidence            34688999775      346788777653  1      23 4567666432    34567999888877432    2589


Q ss_pred             EEEEEeCCCCCCCCCCCCCCceeEEEEEeCcc
Q 040360           76 TVQVQCKSKSSSSGNNNNHNKIVGFARIPVSD  107 (198)
Q Consensus        76 ~~eV~~~~~~~~~g~~~~~d~~IG~a~IpL~~  107 (198)
                      .|+|+..|.   .|    ++.+.|.+.+.|..
T Consensus        79 ~l~V~~~D~---~g----r~~~~GYG~~~lP~  103 (168)
T PF07162_consen   79 VLQVYSLDS---WG----RDRVEGYGFCHLPT  103 (168)
T ss_pred             EEEEEEEcc---cC----CeEEeEEeEEEeCC
Confidence            999999887   77    48898887766643

Although the function is unknown, a cilia-specific role has been suggested for the poorly characterised B9 domain [, , ]. Mutations in MSK1 have been shown to cause Meckel syndrome type 1, a severe foetal development disorder that has been reported in most populations.

>KOG3543 consensus Ca2+-dependent activator protein [Signal transduction mechanisms]

Probab=82.88  E-value=9  Score=37.41  Aligned_cols=117  Identities=14%  Similarity=0.176  Sum_probs=77.9

Q ss_pred             EEEEEEEEeeCCCCCCCCCcCCcEEEEEECCCCcEEEeeeecCCCCCCeeeeEEEEEecCCCcEEEEEEEeCCCC-CCCC
Q 040360           11 TIELTVLSGEDLRIDRRLIKKNAFAIVQTDTSFDYCTTKVDESGGSHPSWNEKLVIELPMHARFITVQVQCKSKS-SSSG   89 (198)
Q Consensus        11 ~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~~~~~~T~v~~~~g~nP~WNE~f~f~v~~~~~~L~~eV~~~~~~-~~~g   89 (198)
                      .+||.|..-++|+....  ..=.||+..+++  .+..|.-.+-  ..|.|...-.|.-.+.-..+.+.+|.+... ..+.
T Consensus       342 smevvvmevqglksvap--nrivyctmeveg--eklqtdqaea--skp~wgtqgdfstthplpvvkvklftestgvlale  415 (1218)
T KOG3543|consen  342 SMEVVVMEVQGLKSVAP--NRIVYCTMEVEG--EKLQTDQAEA--SKPKWGTQGDFSTTHPLPVVKVKLFTESTGVLALE  415 (1218)
T ss_pred             eeeEEEeeeccccccCC--CeeEEEEEEecc--cccccchhhh--cCCCCCcCCCcccCCCCceeEEEEEeecceeEEee
Confidence            57899999999985432  235799999999  7777765553  699999987776665556777888775432 1234


Q ss_pred             CCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEeeCCCCC--ccEEEEEEEEEeeeC
Q 040360           90 NNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRNAKGD--KNGIINVSVRSLKVA  146 (198)
Q Consensus        90 ~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~~~Gk--~~G~I~lsi~~f~~~  146 (198)
                           |+-||.+-+--..=...       ...||.+.-++..  ..-+|.|.++ +..+
T Consensus       416 -----dkelgrvil~ptpns~k-------s~ewh~mtvpknsqdqdlkiklavr-mdkp  461 (1218)
T KOG3543|consen  416 -----DKELGRVILQPTPNSAK-------SPEWHTMTVPKNSQDQDLKIKLAVR-MDKP  461 (1218)
T ss_pred             -----chhhCeEEEecCCCCcC-------CccceeeecCCCCcCccceEEEEEe-ccCC
Confidence                 77788876543322111       2247777665433  4567888888 6644

>PF14186 Aida_C2: Cytoskeletal adhesion; PDB: 2QZQ_A 2QZ5_A

Probab=80.83  E-value=6.1  Score=31.34  Aligned_cols=93  Identities=10%  Similarity=0.082  Sum_probs=52.7

Q ss_pred             eEEEEEEEEeeCCCCCCCCCcCCcEEEEEECCC-----CcEEEeeeecC-CCCCCeeeeEEEEEecC----CCcEEEEEE
Q 040360           10 RTIELTVLSGEDLRIDRRLIKKNAFAIVQTDTS-----FDYCTTKVDES-GGSHPSWNEKLVIELPM----HARFITVQV   79 (198)
Q Consensus        10 ~~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~-----~~~~~T~v~~~-~g~nP~WNE~f~f~v~~----~~~~L~~eV   79 (198)
                      .-|.|.|.+.. |+..  ..-.|||++|++-+.     ...+.|.+... .+..=.||....++.+.    ....+.||+
T Consensus        13 t~l~v~Iekig-lkda--~~~~~P~~tVSV~D~~G~~ve~~QdTpv~~~~~~~yv~f~~~v~lqtple~lp~Gaai~fE~   89 (147)
T PF14186_consen   13 TYLSVFIEKIG-LKDA--SQYIDPYFTVSVKDGNGKDVEPPQDTPVGSRREDNYVHFNNTVHLQTPLEKLPKGAAIFFEF   89 (147)
T ss_dssp             -EEEEEEEEEE--TTG--GG-EEEEEEEEEE-TTS-BSS--EE--S-SEEETTEEEEEEEEE-SS-GGGS-TT-EEEEEE
T ss_pred             ceEEEEEEEEE-ECCh--HHccCCeEEEEEECCCCCCccccccCCCcccccCCEEEEcccEEEcCCHHHCCCceEEEEEE
Confidence            45777777766 7642  234699999998652     34566776532 23556678666665443    246799999


Q ss_pred             EeCCCCCCCCCCCCCCceeEEEEEeCccccCC
Q 040360           80 QCKSKSSSSGNNNNHNKIVGFARIPVSDFIGG  111 (198)
Q Consensus        80 ~~~~~~~~~g~~~~~d~~IG~a~IpL~~l~~~  111 (198)
                      +++..   -.+   +-...+++-+++.++..+
T Consensus        90 kH~K~---kk~---k~S~kcw~fme~dei~~g  115 (147)
T PF14186_consen   90 KHYKP---KKK---KTSTKCWAFMELDEIKPG  115 (147)
T ss_dssp             EEEET---TTT---CEEEEEEEEEEGGG--SE
T ss_pred             Eeeec---cce---eeeeeEEEEEEhhhccCC
Confidence            99764   221   144589999999998766

>KOG1327 consensus Copine [Signal transduction mechanisms]

Probab=80.69  E-value=4.9  Score=38.09  Aligned_cols=60  Identities=15%  Similarity=0.256  Sum_probs=45.0

Q ss_pred             EEeeeecCCCCCCeeeeEEEEEecCC-CcEEEEEEEeCCCC--CCCCCCCCCCceeEEEEEeCccccCC
Q 040360           46 CTTKVDESGGSHPSWNEKLVIELPMH-ARFITVQVQCKSKS--SSSGNNNNHNKIVGFARIPVSDFIGG  111 (198)
Q Consensus        46 ~~T~v~~~~g~nP~WNE~f~f~v~~~-~~~L~~eV~~~~~~--~~~g~~~~~d~~IG~a~IpL~~l~~~  111 (198)
                      .+|.++.+. .||.|-++|.+..-.+ .+.|.|++++.+..  .+..     .+++|++.--|+++...
T Consensus        43 ~rte~i~~~-~~p~f~~~~~l~y~fE~vQ~l~~~~~~~~~~~~~l~~-----~dflg~~~c~l~~ivs~  105 (529)
T KOG1327|consen   43 GRTEVIRNV-LNPFFTKKFLLQYRFEKVQLLRFEVYDIDSRTPDLSS-----ADFLGTAECTLSQIVSS  105 (529)
T ss_pred             cceeeeecc-CCccceeeechhheeeeeeeEEEEEeecCCccCCcch-----hcccceeeeehhhhhhh
Confidence            477788876 9999999998765443 36899999986642  1223     78999999999888754

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	198
1wfj_A	136	Putative elicitor-responsive gene; C2 domain, rike	4e-05
1gmi_A	136	Protein kinase C, epsilon type; PKC, C2 domain, X-	5e-04

>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2 Length = 136

 Score = 40.8 bits (96), Expect = 4e-05
 Identities = 25/131 (19%), Positives = 49/131 (37%), Gaps = 14/131 (10%)

Query: 11  TIELTVLSGEDLRIDRRLIKKNAFAIVQTDTSFDYCTTKVDESGGSHPSWNEKLVIELPM 70
           T+E+ ++S + L     L   + +  +   T      + V E  G+ P WNE  +  +  
Sbjct: 11  TLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQK--SNVAEGMGTTPEWNETFIFTVSE 68

Query: 71  HARFITVQVQCKSKSSSSGNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRNAKG 130
               +  ++  K       +    +  VG A IP+         E  +   +Y +   + 
Sbjct: 69  GTTELKAKIFDK-------DVGTEDDAVGEATIPLEPVF----VEGSIPPTAYNVVKDEE 117

Query: 131 DKNGIINVSVR 141
            K G I V++ 
Sbjct: 118 YK-GEIWVALS 127

>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1 Length = 136

 Score = 37.5 bits (87), Expect = 5e-04
 Identities = 12/108 (11%), Positives = 35/108 (32%), Gaps = 17/108 (15%)

Query: 11  TIELTVLSGEDLRIDRRLIKKNAFAIVQTDTSFDYCTTKVDES---------GGSHPSWN 61
            +++ +     L+     ++       QT     Y    VD+S           + P+W+
Sbjct: 7   LLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWH 66

Query: 62  EKLVIELPMHARFITVQVQCKSKSSSSGNNNNHNKIVGFARIPVSDFI 109
           ++ V ++        +++     +        ++  V    I   + +
Sbjct: 67  DEFVTDVC---NGRKIELAVFHDAPIG-----YDDFVANCTIQFEELL 106

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	198
1wfj_A	136	Putative elicitor-responsive gene; C2 domain, rike	99.92
2dmh_A	140	Myoferlin; beta-sandwich, FER-1-like protein 3, mu	99.91
3kwu_A	148	MUNC13-1; calcium binding protein, phospholipid bi	99.91
2ep6_A	133	MCTP2 protein; beta sandwich, Ca2+ binding, membra	99.9
3m7f_B	176	E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1	99.9
3b7y_A	153	E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-	99.89
2fk9_A	157	Protein kinase C, ETA type; ATP-binding, metal-bin	99.89
1gmi_A	136	Protein kinase C, epsilon type; PKC, C2 domain, X-	99.89
2nq3_A	173	Itchy homolog E3 ubiquitin protein ligase; C2 doma	99.88
1rlw_A	126	Phospholipase A2, CALB domain; hydrolase, C2 domai	99.88
2cjt_A	131	UNC-13 homolog A, MUNC13-1; phorbol-ester binding,	99.87
3pyc_A	132	E3 ubiquitin-protein ligase smurf1; phospholipid b	99.87
2cjs_A	167	UNC-13 homolog A, MUNC13-1; neurotransmitter trans	99.84
2b3r_A	134	Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA	99.82
1a25_A	149	CALB, protein kinase C (beta); calcium++/phospholi	99.81
2d8k_A	141	Synaptotagmin VII; exocytosis, calcium binding, ly	99.81
1rsy_A	152	Synaptotagmin I; calcium/phospholipid binding prot	99.81
3rdl_A	137	Protein kinase C alpha type; protein kinase PKC, t	99.81
3f04_A	143	Synaptotagmin-1; C2A, calcium, cell junction, cyto	99.81
1ugk_A	138	Synaptotagmin IV, KIAA1342; beta sandwich, structu	99.8
1v27_A	141	Regulating synaptic membrane exocytosis protein 2;	99.8
2dmg_A	142	KIAA1228 protein; beta-sandwich, structural genomi	99.8
2bwq_A	129	Regulating synaptic membrane exocytosis protein 2;	99.8
1rh8_A	142	Piccolo protein; beta-sandwich, metal binding prot	99.79
3fbk_A	153	RGS3, RGP3, regulator of G-protein signaling 3; al	99.79
2q3x_A	171	Regulating synaptic membrane exocytosis protein 1;	99.79
3fdw_A	148	Synaptotagmin-like protein 4; structural genomics,	99.79
2chd_A	142	Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium	99.79
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	99.79
2z0u_A	155	WW domain-containing protein 1; C2 domain, alterna	99.79
3n5a_A	138	Synaptotagmin-7; calcium/phospholipid binding prot	99.78
2enp_A	147	B/K protein; C2 type 1,beta sandwich, structural g	99.78
3l9b_A	144	Otoferlin; C2-domain, beta-sheets, cell membrane,	99.78
2cm5_A	166	Rabphilin-3A; protein transport, zinc-finger, Ca2+	99.77
1tjx_A	159	Similar to synaptotagmini/P65; C2B domain, calcium	99.77
1wfm_A	138	Synaptotagmin XIII; C2 domain, exocytosis, neurotr	99.77
1w15_A	153	Synaptotagmin IV; metal binding protein, endocytos	99.76
1djx_A	624	PLC-D1, phosphoinositide-specific phospholipase C,	99.74
3jzy_A	510	Intersectin 2; C2 domain, structural genomics cons	99.73
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	99.73
3nsj_A	540	Perforin-1; pore forming protein, immune system; H	99.7
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	99.64
1cjy_A	749	CPLA2, protein (cytosolic phospholipase A2); lipid	99.6
3bxj_A	483	RAS GTPase-activating protein syngap; GTPase activ	99.58
3qr0_A	816	Phospholipase C-beta (PLC-beta); PH domain, EF han	99.53
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	99.53
3ohm_B	885	1-phosphatidylinositol-4,5-bisphosphate phosphodi	99.51
2zkm_X	799	1-phosphatidylinositol-4,5-bisphosphate phosphodie	99.5
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	99.42
1yrk_A	126	NPKC-delta, protein kinase C, delta type; C2 domai	99.16
2enj_A	138	NPKC-theta, protein kinase C theta type; beta-sand	99.08
2yrb_A	156	Protein fantom; beta sandwich, NPPSFA, national pr	97.52
3l4c_A	220	Dedicator of cytokinesis protein 1; DOCK180, DOCK1	96.26
3hhm_A	1091	Phosphatidylinositol-4,5-bisphosphate 3-kinase cat	95.36
2wxf_A	940	Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca	94.85
1e7u_A	961	Phosphatidylinositol 3-kinase catalytic subunit; p	90.46
2y3a_A	1092	Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca	89.68

>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2

Probab=99.92  E-value=1.2e-24  Score=165.49  Aligned_cols=130  Identities=20%  Similarity=0.268  Sum_probs=111.6

Q ss_pred             CCCCCcceEEEEEEEEeeCCCCCCCCCcCCcEEEEEECCCCcEEEeeeecCCCCCCeeeeEEEEEecCCCcEEEEEEEeC
Q 040360            3 EKSSSGYRTIELTVLSGEDLRIDRRLIKKNAFAIVQTDTSFDYCTTKVDESGGSHPSWNEKLVIELPMHARFITVQVQCK   82 (198)
Q Consensus         3 ~~~~m~~~~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~~~~~~T~v~~~~g~nP~WNE~f~f~v~~~~~~L~~eV~~~   82 (198)
                      +++.+..+.|+|+|++|++|+..+..++.||||+|++++  ++++|+++++++.||+|||+|.|.+......|.|+|||+
T Consensus         3 ~~~~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~--~~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~l~~~V~d~   80 (136)
T 1wfj_A            3 SGSSGPHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRT--QDQKSNVAEGMGTTPEWNETFIFTVSEGTTELKAKIFDK   80 (136)
T ss_dssp             CCCCCCEEEEEEEEEEEEECSSCCSSCSSCCCEEEESSS--CEEECCCCTTCCSSCEEEEEEEEEEESSCCEEEEEECCS
T ss_pred             CCCCCCcEEEEEEEEeccCCCCcccCCCcCceEEEEECC--ccceeEeccCCCCCCccCcEEEEEECCCCCEEEEEEEEC
Confidence            456778899999999999999878788999999999998  678999998445999999999999987678999999999


Q ss_pred             CCCCCCCCCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEeeCCCCCccEEEEEEEEEeeeCC
Q 040360           83 SKSSSSGNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRNAKGDKNGIINVSVRSLKVAA  147 (198)
Q Consensus        83 ~~~~~~g~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~~~Gk~~G~I~lsi~~f~~~~  147 (198)
                      +.   ++    +|++||++.|+|.++....    .....||+|. +.++..|+|+|+++ |.+..
T Consensus        81 ~~---~~----~d~~lG~~~i~l~~l~~~~----~~~~~w~~L~-~~~~~~G~i~l~l~-~~p~~  132 (136)
T 1wfj_A           81 DV---GT----EDDAVGEATIPLEPVFVEG----SIPPTAYNVV-KDEEYKGEIWVALS-FKPSG  132 (136)
T ss_dssp             SS---CT----TTCCSEEEEEESHHHHHHS----EEEEEEEEEE-ETTEEEEEEEEEEE-EEECC
T ss_pred             CC---CC----CCceEEEEEEEHHHhccCC----CCCcEEEEee-cCCccCEEEEEEEE-EEeCC
Confidence            87   66    3999999999999995432    2356799998 66789999999999 87543

>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.91  E-value=3.1e-23  Score=158.35  Aligned_cols=124  Identities=24%  Similarity=0.334  Sum_probs=104.5

Q ss_pred             CCCcceEEEEEEEEeeCCCCCCCCCcCCcEEEEEECCCCcEEEeeeecCCCCCCeeeeEEEEEecC----CCcEEEEEEE
Q 040360            5 SSSGYRTIELTVLSGEDLRIDRRLIKKNAFAIVQTDTSFDYCTTKVDESGGSHPSWNEKLVIELPM----HARFITVQVQ   80 (198)
Q Consensus         5 ~~m~~~~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~~~~~~T~v~~~~g~nP~WNE~f~f~v~~----~~~~L~~eV~   80 (198)
                      +....+.|.|+|++|++|+..+. ++.||||++++++  ++++|++++++ .||+|||+|.|.+..    ....|.|+||
T Consensus         2 ~s~~~g~L~v~v~~a~~L~~~~~-g~~dpyv~v~~~~--~~~kT~v~~~t-~nP~wne~f~f~v~~~~~~~~~~l~i~V~   77 (140)
T 2dmh_A            2 SSGSSGMLRVIVESASNIPKTKF-GKPDPIVSVIFKD--EKKKTKKVDNE-LNPVWNEILEFDLRGIPLDFSSSLGIIVK   77 (140)
T ss_dssp             CSCBCCEEEEEEEEEESCCCCSS-SCCCEEEEEECSS--CEEECCCCCSC-SSCEEEEEEEEECSSCCCCTTCEEEEEEE
T ss_pred             CCCCCcEEEEEEEEeeCCCCCCC-CCCCeEEEEEECC--EeEEeeeecCC-CCCccCcEEEEEecccccCCCCEEEEEEE
Confidence            44566899999999999987776 8999999999998  78999999876 999999999999964    3579999999


Q ss_pred             eCCCCCCCCCCCCCCceeEEEEEeCccccCCCCCCCceEeEEEE---eeCCCC-CccEEEEEEEEEeee
Q 040360           81 CKSKSSSSGNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYR---LRNAKG-DKNGIINVSVRSLKV  145 (198)
Q Consensus        81 ~~~~~~~~g~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~---L~~~~G-k~~G~I~lsi~~f~~  145 (198)
                      |++.   ++    +|++||++.|+|.++..+.     ....||+   |.+..+ +.+|+|+|+++ |.+
T Consensus        78 d~d~---~~----~~~~lG~~~i~l~~l~~~~-----~~~~w~~l~~l~~~~~~~~~G~l~l~~~-~~p  133 (140)
T 2dmh_A           78 DFET---IG----QNKLIGTATVALKDLTGDQ-----SRSLPYKLISLLNEKGQDTGATIDLVIG-YDP  133 (140)
T ss_dssp             ETTC---SS----SCCCCEEEEEEGGGTCSSS-----CEEEEEEEEEEECTTCCEEEEEEEEEEE-ECC
T ss_pred             ECCC---CC----CCceEEEEEEEHHHhccCC-----CceeEEeeeeccCCCCCCCCCEEEEEEE-EEC
Confidence            9987   66    3899999999999997653     1345776   877665 46899999999 874

>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} SCOP: b.7.1.0 PDB: 3kwt_A*

Probab=99.91  E-value=3.7e-23  Score=159.57  Aligned_cols=126  Identities=20%  Similarity=0.285  Sum_probs=103.7

Q ss_pred             CCCCCCcceEEEEEEEEeeCCCCCCCCCcCCcEEEEEECCCCcEEEeeeecCCCCCCeeeeEEEEEecCCCcEEEEEEEe
Q 040360            2 LEKSSSGYRTIELTVLSGEDLRIDRRLIKKNAFAIVQTDTSFDYCTTKVDESGGSHPSWNEKLVIELPMHARFITVQVQC   81 (198)
Q Consensus         2 ~~~~~m~~~~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~~~~~~T~v~~~~g~nP~WNE~f~f~v~~~~~~L~~eV~~   81 (198)
                      +.+..+..+.|.|+|++|++|+..+..+++||||++.++.  ++++|++++++ .||.|||+|.|.+......|.|+|||
T Consensus         9 ~~~~~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~--~~~kT~~~~~t-~nP~Wne~f~f~v~~~~~~l~~~v~d   85 (148)
T 3kwu_A            9 LDGTSKWSAKISITVVCAQGLQAKDKTGSSDPYVTVQVGK--TKKRTKTIYGN-LNPVWEENFHFECHNSSDRIKVRVLD   85 (148)
T ss_dssp             ------CCEEEEEEEEEEESCCCCSTTSCCCEEEEEEETT--EEEECCCCCSC-SSCEEEEEEEEEECSTTCEEEEEEEE
T ss_pred             cccccccccEEEEEEEeeeCCCCCCCCCCcCeEEEEEECC--EEEECCccCCC-CCCCcccEEEEEecCCCCEEEEEEEE
Confidence            4567778899999999999999877788999999999987  88999999987 99999999999998767899999999


Q ss_pred             CCCCCCC-----------CCCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEeeCCC--CCccEEEEEEEEEeee
Q 040360           82 KSKSSSS-----------GNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRNAK--GDKNGIINVSVRSLKV  145 (198)
Q Consensus        82 ~~~~~~~-----------g~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~~~--Gk~~G~I~lsi~~f~~  145 (198)
                      ++.   +           +    +|++||++.|+|.++..+       ...||.|....  ++..|.|+|++. |+-
T Consensus        86 ~d~---~~~~~~~~~~~~~----~~~~lG~~~i~l~~l~~~-------~~~w~~L~~~~~~~~~~G~i~l~l~-~e~  147 (148)
T 3kwu_A           86 EDD---DIKSRVKQRFKRE----SDDFLGQTIIEVRTLSGE-------MDVWYNLDKRTDKSAVSGAIRLHIS-VEI  147 (148)
T ss_dssp             CCC---SHHHHHHTTTSSC----SSEEEEEEEEEGGGCCSE-------EEEEEECBCSSTTCCCCCEEEEEEE-EEC
T ss_pred             CCC---CccccccccccCC----CCccEEEEEEEHHHCcCC-------CCEEEEcccCCCCCCCceEEEEEEE-EEe
Confidence            886   4           4    399999999999999321       35799998643  347899999999 863

>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1

Probab=99.90  E-value=1.8e-23  Score=158.77  Aligned_cols=121  Identities=19%  Similarity=0.261  Sum_probs=105.0

Q ss_pred             CCcceEEEEEEEEeeCCCCCCCCCcCCcEEEEEECCCCcEEEeeeecCCCCCCeeeeEEEEEecCCCcEEEEEEEeCCCC
Q 040360            6 SSGYRTIELTVLSGEDLRIDRRLIKKNAFAIVQTDTSFDYCTTKVDESGGSHPSWNEKLVIELPMHARFITVQVQCKSKS   85 (198)
Q Consensus         6 ~m~~~~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~~~~~~T~v~~~~g~nP~WNE~f~f~v~~~~~~L~~eV~~~~~~   85 (198)
                      ....+.|+|+|++|++|+..+..+++||||++++++  ++++|++++++ .||.|||+|.|.+......|.|+|||++. 
T Consensus         9 ~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~--~~~kT~~~~~t-~nP~wne~f~f~~~~~~~~l~i~V~d~d~-   84 (133)
T 2ep6_A            9 VKDVGILQVKVLKAADLLAADFSGKSDPFCLLELGN--DRLQTHTVYKN-LNPEWNKVFTFPIKDIHDVLEVTVFDEDG-   84 (133)
T ss_dssp             CCCSEEEEEEEEEEESCCCSSSSSCCCEEEEEEETT--EEEECCCCSSC-SSCCCCEEEEEEESCTTCEEEEEEEEEET-
T ss_pred             cCCceEEEEEEEeeECCCCCCCCCCcCeEEEEEECC--EEEEeeeecCC-CCCccccEEEEEecCCCCEEEEEEEECCC-
Confidence            345689999999999999877788999999999998  78899999986 99999999999998767899999999987 


Q ss_pred             CCCCCCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEeeCCC--CCccEEEEEEEEEee
Q 040360           86 SSSGNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRNAK--GDKNGIINVSVRSLK  144 (198)
Q Consensus        86 ~~~g~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~~~--Gk~~G~I~lsi~~f~  144 (198)
                        .+    +|++||++.|+|.++..+.       ..||+|.+.+  ++..|+|+|+++ |.
T Consensus        85 --~~----~~~~lG~~~i~l~~l~~~~-------~~w~~L~~~~~~~~~~G~i~l~i~-~~  131 (133)
T 2ep6_A           85 --DK----PPDFLGKVAIPLLSIRDGQ-------PNCYVLKNKDLEQAFKGVIYLEMD-LI  131 (133)
T ss_dssp             --TE----EEEECCBCEEEGGGCCSSC-------CEECCCBCSCTTSCCSSEEEEEEE-EE
T ss_pred             --CC----CCCeeEEEEEEHHHccCCC-------ceEEEeecCCCCCccceEEEEEEE-EE
Confidence              65    3899999999999997542       2689998765  358899999999 64

>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus}

Probab=99.90  E-value=1.3e-22  Score=161.35  Aligned_cols=133  Identities=16%  Similarity=0.251  Sum_probs=102.6

Q ss_pred             CCCcceEEEEEEEEeeCCCCCCCCCcCCcEEEEEECCCC----cEEEeeeecCCCCCCeeeeEEEEEecCCCcEEEEEEE
Q 040360            5 SSSGYRTIELTVLSGEDLRIDRRLIKKNAFAIVQTDTSF----DYCTTKVDESGGSHPSWNEKLVIELPMHARFITVQVQ   80 (198)
Q Consensus         5 ~~m~~~~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~~----~~~~T~v~~~~g~nP~WNE~f~f~v~~~~~~L~~eV~   80 (198)
                      .+-..+.|.|+|++|++|+..+..+++||||+|++.+..    .+++|++++++ .||.|||+|.|.+......|.|+||
T Consensus         3 ~~~~~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~kT~v~~~t-~nP~Wne~f~f~v~~~~~~L~~~V~   81 (176)
T 3m7f_B            3 HNDDTRVVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKS-LNPKWNEEILFRVLPQRHRILFEVF   81 (176)
T ss_dssp             CCTTCEEEEEEEEEEESCC---CCCCCCEEEEEEEEETTTEEEEEEECCCCSSC-SSCEEEEEEEEEECTTTCEEEEEEE
T ss_pred             CCCCcEEEEEEEEEeeCCCCcCCCCCcCcEEEEEEECCCCCcccceeCceECCC-CCCcccceEEEEEcCCCCEEEEEEE
Confidence            345679999999999999887778899999999998632    46899999975 9999999999999876789999999


Q ss_pred             eCCCCCCCCCCCCCCceeEEEEEeCccccCCCCC-CCceEeEEEEeeCC--CCCccEEEEEEEEEeeeC
Q 040360           81 CKSKSSSSGNNNNHNKIVGFARIPVSDFIGGYAP-ENYLHFLSYRLRNA--KGDKNGIINVSVRSLKVA  146 (198)
Q Consensus        81 ~~~~~~~~g~~~~~d~~IG~a~IpL~~l~~~~~~-~~~~~~~sy~L~~~--~Gk~~G~I~lsi~~f~~~  146 (198)
                      |++.   ++    +|++||++.|+|.++..+... +......||.|...  .++.+|+|+|+++ |.+.
T Consensus        82 d~d~---~~----~d~~lG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~l~-~~p~  142 (176)
T 3m7f_B           82 DENR---LT----RDDFLGQVDVPLYPLPTENPRMERPYTFKDFVLHPRSHKSRVKGYLRLKMT-YLPK  142 (176)
T ss_dssp             ECC-----------CEEEEEEEEESCSCCBC------CCCCEEEECBCSSTTCCCCSEEEEEEE-ECC-
T ss_pred             ECCC---CC----CCcEEEEEEEEHHHccccCCcccccccccEEEccccCCCCccCEEEEEEEE-EEeC
Confidence            9987   66    389999999999999876421 11122369998864  4567899999999 8765

>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A

Probab=99.89  E-value=2.8e-22  Score=155.37  Aligned_cols=129  Identities=14%  Similarity=0.237  Sum_probs=100.7

Q ss_pred             CcceEEEEEEEEeeCCCCCCCCCcCCcEEEEEECCCC----cEEEeeeecCCCCCCeeeeEEEEEecCCCcEEEEEEEeC
Q 040360            7 SGYRTIELTVLSGEDLRIDRRLIKKNAFAIVQTDTSF----DYCTTKVDESGGSHPSWNEKLVIELPMHARFITVQVQCK   82 (198)
Q Consensus         7 m~~~~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~~----~~~~T~v~~~~g~nP~WNE~f~f~v~~~~~~L~~eV~~~   82 (198)
                      ...+.|+|+|++|++|+..+..++.||||+|++.++.    .+++|++++++ .||+|||+|.|.+......|.|+|||+
T Consensus        17 ~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~~kT~v~~~t-~nP~wne~f~f~v~~~~~~l~~~V~d~   95 (153)
T 3b7y_A           17 ENSRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKS-LNPKWNEEILFRVHPQQHRLLFEVFDE   95 (153)
T ss_dssp             TTCEEEEEEEEEEESCC-------CCEEEEEEEEETTTEEEEEEECCCCSSC-SSCCCCEEEEEEECTTTCEEEEEEEEC
T ss_pred             CCccEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCccceeeeCccccCC-CCCCCCCEEEEEecCCCCEEEEEEEEC
Confidence            3458999999999999887777899999999998521    47899999986 999999999999987778999999999


Q ss_pred             CCCCCCCCCCCCCceeEEEEEeCccccCCCCCC-CceEeEEEEeeCCC--CCccEEEEEEEEEee
Q 040360           83 SKSSSSGNNNNHNKIVGFARIPVSDFIGGYAPE-NYLHFLSYRLRNAK--GDKNGIINVSVRSLK  144 (198)
Q Consensus        83 ~~~~~~g~~~~~d~~IG~a~IpL~~l~~~~~~~-~~~~~~sy~L~~~~--Gk~~G~I~lsi~~f~  144 (198)
                      +.   ++    +|++||++.|+|.++..+.... ..+...||.|...+  ++..|+|+|++. |.
T Consensus        96 d~---~~----~d~~iG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~l~-~~  152 (153)
T 3b7y_A           96 NR---LT----RDDFLGQVDVPLYPLPTENPRLERPYTFKDFVLHPRSHKSRVKGYLRLKMT-YL  152 (153)
T ss_dssp             CS---SS----CCEEEEEEEEECCSCCBCCTTSCCCCCCEEEECBCSSTTCCCCSEEEEEEE-EC
T ss_pred             CC---Cc----CCCeeEEEEEEHHHcccCCCcccccccccccccccccCCCCcceEEEEEEE-Ee
Confidence            87   66    3899999999999998764210 12234799997643  467899999999 75

>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens}

Probab=99.89  E-value=1.9e-22  Score=159.71  Aligned_cols=124  Identities=12%  Similarity=0.138  Sum_probs=99.8

Q ss_pred             CCCCcceEEEEEEEEeeCCCCCCC----------CCcCCcEEEEEECCCCcEEEeeeecCCCCCCeeeeEEEEEecCCCc
Q 040360            4 KSSSGYRTIELTVLSGEDLRIDRR----------LIKKNAFAIVQTDTSFDYCTTKVDESGGSHPSWNEKLVIELPMHAR   73 (198)
Q Consensus         4 ~~~m~~~~LeVtVlsA~~L~~~~~----------~~~~dpYvvv~~~~~~~~~~T~v~~~~g~nP~WNE~f~f~v~~~~~   73 (198)
                      +..+..+.|.|+|++|++|+..+.          .+..||||+|+++. ....+|++.+++ .||+|||+|.|.+.. ..
T Consensus        23 ~~~~~~g~L~V~VieA~~L~~~D~~~~~~~f~~~~g~sDPYv~v~l~~-~~~~kT~v~~kt-lnP~WNE~F~f~v~~-~~   99 (157)
T 2fk9_A           23 GTMKFNGYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVDQ-VRVGQTSTKQKT-NKPTYNEEFCANVTD-GG   99 (157)
T ss_dssp             -CCCEEEEEEEEEEEEECCCCCHHHHHTTTSSSSCCCCCEEEEEEETT-EEEEECCCCSSC-SSCEEEEEEEEEEEE-EC
T ss_pred             hhccCccEEEEEEEEEECCCCccccccccccccCCCCCCeEEEEEECC-EeeEEeeecCCC-CCCccCcEEEEEcCC-CC
Confidence            344566899999999999986542          25689999999988 445799998886 999999999999975 46


Q ss_pred             EEEEEEEeCCCCCCCCCCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEeeCCCCCccEEEEEEEEEee
Q 040360           74 FITVQVQCKSKSSSSGNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRNAKGDKNGIINVSVRSLK  144 (198)
Q Consensus        74 ~L~~eV~~~~~~~~~g~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~~~Gk~~G~I~lsi~~f~  144 (198)
                      .|.|+|||++.   ++    +|++||.+.|||.++..+.. +......||+|.     ++|.|+|.+. |.
T Consensus       100 ~L~~~V~D~d~---~~----~dd~iG~~~i~l~~l~~~~~-~~~~~~~W~~L~-----~~G~i~l~l~-~~  156 (157)
T 2fk9_A          100 HLELAVFHETP---LG----YDHFVANCTLQFQELLRTTG-ASDTFEGWVDLE-----PEGKVFVVIT-LT  156 (157)
T ss_dssp             EEEEEEEECCS---SS----SCEEEEEEEEEHHHHHHHHT-TCSEEEEEEECB-----SSCEEEEEEE-EC
T ss_pred             EEEEEEEECCC---CC----CCCEEEEEEEEHHHhhcccC-CCCcccEEEECC-----CCcEEEEEEE-EE
Confidence            89999999987   66    38999999999999986510 112457899995     3899999998 75

>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1

Probab=99.89  E-value=2e-22  Score=153.86  Aligned_cols=120  Identities=13%  Similarity=0.183  Sum_probs=98.5

Q ss_pred             CcceEEEEEEEEeeCCCCCCCCCc-----------CCcEEEEEECCCCcEEEeeeecCCCCCCeeeeEEEEEecCCCcEE
Q 040360            7 SGYRTIELTVLSGEDLRIDRRLIK-----------KNAFAIVQTDTSFDYCTTKVDESGGSHPSWNEKLVIELPMHARFI   75 (198)
Q Consensus         7 m~~~~LeVtVlsA~~L~~~~~~~~-----------~dpYvvv~~~~~~~~~~T~v~~~~g~nP~WNE~f~f~v~~~~~~L   75 (198)
                      |..+.|+|+|++|++|+..+.+++           .||||+|++++ ....+|++.+++ .||+|||+|.|.+... ..|
T Consensus         3 ~~~g~L~v~v~~a~~L~~~d~~~~~~~g~~~~~~~~DPyv~v~l~~-~~~~~T~~~~~t-~nP~WnE~f~f~v~~~-~~L   79 (136)
T 1gmi_A            3 VFNGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDD-SRIGQTATKQKT-NSPAWHDEFVTDVCNG-RKI   79 (136)
T ss_dssp             CEEEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEETT-EEEEECCCCSSC-SSCEEEEEEEEEEEEE-CEE
T ss_pred             ccceEEEEEEEeCcCCCCcccccccccccccCCcCcCcEEEEEECC-eEeeeeeEECCC-cCCccCCEEEEEecCC-CEE
Confidence            567999999999999986554333           89999999987 445689988876 8999999999999764 799


Q ss_pred             EEEEEeCCCCCCCCCCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEeeCCCCCccEEEEEEEEEeee
Q 040360           76 TVQVQCKSKSSSSGNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRNAKGDKNGIINVSVRSLKV  145 (198)
Q Consensus        76 ~~eV~~~~~~~~~g~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~~~Gk~~G~I~lsi~~f~~  145 (198)
                      .|+|||++.   ++    +|++||++.|+|.++..+.  . .....||.|.     ++|+|+|.++ |..
T Consensus        80 ~~~V~d~d~---~~----~dd~iG~~~i~l~~l~~~~--~-~~~~~w~~L~-----~~G~i~l~l~-~~~  133 (136)
T 1gmi_A           80 ELAVFHDAP---IG----YDDFVANCTIQFEELLQNG--S-RHFEDWIDLE-----PEGKVYVIID-LSG  133 (136)
T ss_dssp             EEEEEECCS---SS----SCEEEEEEEEEHHHHTSTT--C-SEEEEEEECB-----SSCEEEEEEE-EEE
T ss_pred             EEEEEeCCC---CC----CCCEEEEEEEEHHHhcccC--C-CCccEEEEcC-----CCeEEEEEEE-EEe
Confidence            999999987   66    3899999999999998652  1 1236788874     4899999999 864

>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1

Probab=99.88  E-value=1.3e-21  Score=156.50  Aligned_cols=126  Identities=12%  Similarity=0.160  Sum_probs=101.7

Q ss_pred             cceEEEEEEEEeeCCCCCCCCCcCCcEEEEEECCCCcEEEeeeecCCCCCCeeeeEEEEEecCCCcEEEEEEEeCCCCCC
Q 040360            8 GYRTIELTVLSGEDLRIDRRLIKKNAFAIVQTDTSFDYCTTKVDESGGSHPSWNEKLVIELPMHARFITVQVQCKSKSSS   87 (198)
Q Consensus         8 ~~~~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~~~~~~T~v~~~~g~nP~WNE~f~f~v~~~~~~L~~eV~~~~~~~~   87 (198)
                      ..+.|+|+|++|++|+.....++.||||+|++++  ++++|++++++ .||+|||+|.|.+.. ...|.|+|||++.   
T Consensus        34 ~~~~L~V~V~~A~~L~~~~~~~~sDPYv~v~~~~--~~~kT~v~~~t-lnP~Wne~f~f~v~~-~~~L~~~V~D~d~---  106 (173)
T 2nq3_A           34 MKSQLQITVISAKLKENKKNWFGPSPYVEVTVDG--QSKKTEKCNNT-NSPKWKQPLTVIVTP-VSKLHFRVWSHQT---  106 (173)
T ss_dssp             CCEEEEEEEEEEEECCCC--CCCCCEEEEEEETT--EEEECCCCSSC-SSCEEEEEEEEEECT-TCEEEEEEEECCS---
T ss_pred             CceEEEEEEEEeECCCCcccCCCCCeEEEEEECC--EEeEccccCCC-CCCeECCEEEEEeCC-CCEEEEEEEECCC---
Confidence            5688999999999998444445699999999998  88999999976 999999999999965 6899999999987   


Q ss_pred             CCCCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEeeCCC--CCccEEEEEEEEEeee
Q 040360           88 SGNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRNAK--GDKNGIINVSVRSLKV  145 (198)
Q Consensus        88 ~g~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~~~--Gk~~G~I~lsi~~f~~  145 (198)
                      +++    |++||++.|+|.++..+.........+|++|...+  .+..|+|+|.+. +..
T Consensus       107 ~~~----dd~lG~~~i~l~~l~~~~~~~~~~~~~~~~L~~~~~~~~~~G~L~v~l~-~l~  161 (173)
T 2nq3_A          107 LKS----DVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGDKEPTETIGDLSICLD-GLQ  161 (173)
T ss_dssp             SSC----CEEEEEEEEEHHHHHHHTTTEESSEEEEEEEEESSCTTSEEEEEEEEEE-SEE
T ss_pred             CCC----CceEEEEEEEHHHhcccCCCCcceeEEEEECccCCCCCcccEEEEEEEe-eee
Confidence            663    89999999999999865421111125689988753  347899999998 553

>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1

Probab=99.88  E-value=1.6e-21  Score=146.14  Aligned_cols=116  Identities=14%  Similarity=0.178  Sum_probs=96.3

Q ss_pred             ceEEEEEEEEeeCCCC---CCCCCcCCcEEEEEECCC-CcEEEeeeecCCCCCCeeeeEEEEEec-CCCcEEEEEEEeCC
Q 040360            9 YRTIELTVLSGEDLRI---DRRLIKKNAFAIVQTDTS-FDYCTTKVDESGGSHPSWNEKLVIELP-MHARFITVQVQCKS   83 (198)
Q Consensus         9 ~~~LeVtVlsA~~L~~---~~~~~~~dpYvvv~~~~~-~~~~~T~v~~~~g~nP~WNE~f~f~v~-~~~~~L~~eV~~~~   83 (198)
                      .+.|.|+|++|++|+.   .+..++.||||++++++. ..+++|++++++ .||+|||+|.|.+. .....|.|+|||++
T Consensus         2 ~~~L~v~v~~a~~L~~~~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t-~nP~wne~f~f~v~~~~~~~l~i~V~d~d   80 (126)
T 1rlw_A            2 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNND-INPVWNETFEFILDPNQENVLEITLMDAN   80 (126)
T ss_dssp             CEEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTC-SSCEEEEEEEEEECTTSCCEEEEEEEECC
T ss_pred             CcEEEEEEEeeeCCCCCCccccCCCCCCEEEEEEccCCCceEEccccCCC-CCCcccceEEEEecCCCCCEEEEEEEECC
Confidence            4899999999999986   244578999999999963 368899999986 99999999999995 44679999999998


Q ss_pred             CCCCCCCCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEeeCCCCCccEEEEEEEE
Q 040360           84 KSSSSGNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRNAKGDKNGIINVSVR  141 (198)
Q Consensus        84 ~~~~~g~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~~~Gk~~G~I~lsi~  141 (198)
                      .   .+     |++||++.|+|.++..+.     ....||+|..   +..|.|+|++.
T Consensus        81 ~---~~-----~~~iG~~~i~l~~l~~~~-----~~~~~~~L~~---~~~g~i~~~le  122 (126)
T 1rlw_A           81 Y---VM-----DETLGTATFTVSSMKVGE-----KKEVPFIFNQ---VTEMVLEMSLE  122 (126)
T ss_dssp             S---SC-----CEEEEEEEEEGGGSCTTC-----EEEEEEEETT---TEEEEEEEEEE
T ss_pred             C---CC-----CceeEEEEEEHHHccCCC-----cEEEEEEcCC---CceEEEEEEEE
Confidence            7   55     889999999999997543     3567999963   56777777776

>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1

Probab=99.87  E-value=6.8e-22  Score=151.32  Aligned_cols=122  Identities=17%  Similarity=0.161  Sum_probs=88.4

Q ss_pred             CcceEEEEEEEEeeCCCCCCCCCcCCcEEEEEECCCCcEEEeeeecCCCCCCeeeeEEEEEecCCCcEEEEEEEeCCCCC
Q 040360            7 SGYRTIELTVLSGEDLRIDRRLIKKNAFAIVQTDTSFDYCTTKVDESGGSHPSWNEKLVIELPMHARFITVQVQCKSKSS   86 (198)
Q Consensus         7 m~~~~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~~~~~~T~v~~~~g~nP~WNE~f~f~v~~~~~~L~~eV~~~~~~~   86 (198)
                      |+.+.|.|+|++|++|..   .++.||||+|+  .  +..+|+++++.+.||+|||+|.|.+......|.|+|||++.  
T Consensus         2 ~~~~~L~V~V~~A~~l~~---~g~~DPYv~v~--~--~~~kt~~~~~~t~nP~WnE~f~f~v~~~~~~L~~~V~D~d~--   72 (131)
T 2cjt_A            2 GVMSLLCVGVKKAKFDGA---QEKFNTYVTLK--V--QNVKSTTIAVRGSQPSWEQDFMFEINRLDLGLTVEVWNKGL--   72 (131)
T ss_dssp             CCCEEEEEEEEEEECSSC---GGGCEEEEEEE--E--TTEEEECCCEESSSCEEEEEEEEEECCCSSEEEEEEEECCS--
T ss_pred             CcceEEEEEEEEeECCCC---CCCcCeEEEEE--e--cCEEEeEecCCCCCceECCEEEEEEeCCCCeEEEEEEECCC--
Confidence            677899999999999852   57899999999  3  34466666544599999999999998766789999999874  


Q ss_pred             CCCCCCCCCceeEEEEEeCccccCCCC-CCCceEeEEEEeeCCCCCccEE-------EEEEEEEee
Q 040360           87 SSGNNNNHNKIVGFARIPVSDFIGGYA-PENYLHFLSYRLRNAKGDKNGI-------INVSVRSLK  144 (198)
Q Consensus        87 ~~g~~~~~d~~IG~a~IpL~~l~~~~~-~~~~~~~~sy~L~~~~Gk~~G~-------I~lsi~~f~  144 (198)
                       ..     |++||++.|||.++..... ....+..++|++.+++|+..|+       +.+++| |.
T Consensus        73 -~~-----dd~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~g~~~G~~~p~~~~~~~~~~-~~  131 (131)
T 2cjt_A           73 -IW-----DTMVGTVWIPLRTIRQSNEEGPGEWLTLDSQAIMADSEICGTKDPTFHRILLDAH-FE  131 (131)
T ss_dssp             -SC-----EEEEEEEEEEGGGSCBCSSCCCCEEEECBC----------CCSCCCCCEEEEEEE-EC
T ss_pred             -CC-----CCeEEEEEEEHHHhhhcCCCCccccEEcccccccCCCcCcceECCCccEEEEEEE-eC
Confidence             44     9999999999999875431 1124566788887777777666       888888 73

>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A

Probab=99.87  E-value=2.7e-21  Score=146.57  Aligned_cols=124  Identities=20%  Similarity=0.222  Sum_probs=98.4

Q ss_pred             cceEEEEEEEEeeCCCCCCCCCcCCcEEEEEECCCCcEEEeeeecCCCCCCeeeeEEEEEecCCCcEEEEEEEeCCCCCC
Q 040360            8 GYRTIELTVLSGEDLRIDRRLIKKNAFAIVQTDTSFDYCTTKVDESGGSHPSWNEKLVIELPMHARFITVQVQCKSKSSS   87 (198)
Q Consensus         8 ~~~~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~~~~~~T~v~~~~g~nP~WNE~f~f~v~~~~~~L~~eV~~~~~~~~   87 (198)
                      +...|+|+|++|++|+..+..++.||||++++++..++++|++++++ .||+|||+|.|.+.... .|.|+|||++.   
T Consensus         3 ~~~~L~V~v~~a~~L~~~d~~g~sDpyv~v~~~~~~~~~kT~v~~~t-~nP~wne~f~f~v~~~~-~l~~~v~d~d~---   77 (132)
T 3pyc_A            3 EFIKIRLTVLCAKNLAKKDFFRLPDPFAKIVVDGSGQCHSTDTVKNT-LDPKWNQHYDLYVGKTD-SITISVWNHKK---   77 (132)
T ss_dssp             SEEEEEEEEEEEESCCCCSTTCCCCEEEEEEETTTCCEEECCCCSSC-SSCEEEEEEEEEEETTC-CEEEEEEEGGG---
T ss_pred             CeEEEEEEEEEeECCCCCCCCCCcCeEEEEEECCCCceEECCccCCC-CCCCccCEEEEEeCCCC-EEEEEEEECCC---
Confidence            45789999999999988788889999999999864478899999876 99999999999997653 59999999987   


Q ss_pred             CCCCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEeeCCCC----CccEEEEEEEE
Q 040360           88 SGNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRNAKG----DKNGIINVSVR  141 (198)
Q Consensus        88 ~g~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~~~G----k~~G~I~lsi~  141 (198)
                      +++ +..|++||.+.|+|.++......    ...+|+|....+    +..|+|+|++.
T Consensus        78 ~~~-~~~d~~lG~~~i~l~~l~~~~~~----~~~~~~L~~~~~~~~~~~~G~i~v~l~  130 (132)
T 3pyc_A           78 IHK-KQGAGFLGCVRLLSNAISRLKDT----GYQRLDLCKLNPSDTDAVRGQIVVSLQ  130 (132)
T ss_dssp             TTS-STTTTEEEEEEECHHHHHHHTTS----CCEEEECBCSSTTCCCCCCSEEEEEEE
T ss_pred             CCC-CCCCCceEEEEEeHHHhhccccc----CcEEEeeeecCCCCCCceeEEEEEEEE
Confidence            552 11268999999999988443211    125678876422    35899999987

>2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1

Probab=99.84  E-value=5.4e-20  Score=146.61  Aligned_cols=124  Identities=19%  Similarity=0.186  Sum_probs=97.9

Q ss_pred             ceEEEEEEEEeeCCCCCCCCCcCCcEEEEEECCCCcEEEeeeecCCCCCCeeeeEEEEEecCCCcEEEEEEEeCCCCCCC
Q 040360            9 YRTIELTVLSGEDLRIDRRLIKKNAFAIVQTDTSFDYCTTKVDESGGSHPSWNEKLVIELPMHARFITVQVQCKSKSSSS   88 (198)
Q Consensus         9 ~~~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~~~~~~T~v~~~~g~nP~WNE~f~f~v~~~~~~L~~eV~~~~~~~~~   88 (198)
                      .+.|.|+|++|++|.   ..+++||||+|+  .  +..+|+++++.+.||+|||+|.|.+......|.|+|||++.   .
T Consensus        13 ~~~L~V~V~~A~~l~---~~g~~DPYV~v~--~--~~~kt~~~~~~t~nP~WnE~f~f~v~~~~~~L~~~V~D~d~---~   82 (167)
T 2cjs_A           13 LSLLCVGVKKAKFDG---AQEKFNTYVTLK--V--QNVESTTIAVRGSQPSWEQDFMFEINRLDLGLTVEVWNKGL---I   82 (167)
T ss_dssp             CCEEEEEEEEEECSS---CGGGCEEEEEEE--E--TTEEEECCCEESSSCEEEEEEEEECCCTTSEEEEEEEECCS---S
T ss_pred             eEEEEEEEEEEECCC---CCCCCCeEEEEE--e--cceEEEEecCCCCCCCCCCEEEEEeeCCCCEEEEEEEECCC---C
Confidence            468999999999884   357899999999  3  34567776644599999999999998767789999999874   4


Q ss_pred             CCCCCCCceeEEEEEeCccccCCCCCCC--ceEeEEEEeeCCCCCccE-------EEEEEEEEeeeCCcc
Q 040360           89 GNNNNHNKIVGFARIPVSDFIGGYAPEN--YLHFLSYRLRNAKGDKNG-------IINVSVRSLKVAADQ  149 (198)
Q Consensus        89 g~~~~~d~~IG~a~IpL~~l~~~~~~~~--~~~~~sy~L~~~~Gk~~G-------~I~lsi~~f~~~~~~  149 (198)
                      .     |++||++.|||.++.... .+.  .+..++|++.+++|+..|       .|++.++ |..+.+.
T Consensus        83 ~-----dd~iG~~~i~L~~l~~~~-~~g~~~~~~~~~~~~~~~g~~~g~~~p~~~~lll~~~-~e~~~~~  145 (167)
T 2cjs_A           83 W-----DTMVGTVWIPLRTIRQSN-EEGPGEWLTLDSQAIMADSEICGTKDPTFHRILLDAH-FELPLDI  145 (167)
T ss_dssp             C-----CEEEEEEEEEGGGSCBCS-SCCCCEEEEEEEEEEEETTEEEEEEEEEEEEEEEEEE-EECCCCC
T ss_pred             C-----CceEEEEEEEHHHhcccC-cCCcccceeeeeeeEcCCCCCCceEccccceEEEEEE-eecCCCC
Confidence            4     999999999999987543 122  466778888777776554       4888999 8877654

>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus}

Probab=99.82  E-value=3e-19  Score=136.31  Aligned_cols=106  Identities=20%  Similarity=0.195  Sum_probs=88.2

Q ss_pred             cceEEEEEEEEeeCCCCCCCCCcCCcEEEEEECCC---CcEEEeeeecCCCCCCeeeeEEEEE-ecC---CCcEEEEEEE
Q 040360            8 GYRTIELTVLSGEDLRIDRRLIKKNAFAIVQTDTS---FDYCTTKVDESGGSHPSWNEKLVIE-LPM---HARFITVQVQ   80 (198)
Q Consensus         8 ~~~~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~---~~~~~T~v~~~~g~nP~WNE~f~f~-v~~---~~~~L~~eV~   80 (198)
                      ..+.|.|+|++|++|+. +..+..||||+|++.++   ..+++|++.+++ .||+|||+|.|. ++.   ....|.|+||
T Consensus        18 ~~~~L~V~V~~a~~L~~-~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t-~nP~wnE~f~f~~v~~~~l~~~~L~~~V~   95 (134)
T 2b3r_A           18 RNGTLFIMVMHIKDLVT-EDGADPNPYVKTYLLPDTHKTSKRKTKISRKT-RNPTFNEMLVYSGYSKETLRQRELQLSVL   95 (134)
T ss_dssp             ETTEEEEEEEEEECCCC-TTSCCCCEEEEEEEESCSSSCCCEECCCCCSC-SSCEEEEEEEEESCCHHHHTTCEEEEEEE
T ss_pred             cCCEEEEEEEEeeCCCC-CCCCCCCeEEEEEEEcCCCCCceecCCcCcCC-CCCCCccEEEECCcCHHHhCcCEEEEEEE
Confidence            34789999999999986 66788999999999432   367899999986 999999999999 764   3479999999


Q ss_pred             eCCCCCCCCCCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEeeC
Q 040360           81 CKSKSSSSGNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRN  127 (198)
Q Consensus        81 ~~~~~~~~g~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~  127 (198)
                      |++.   ++    ++++||++.|+|.++..+.     ....||+|..
T Consensus        96 d~d~---~~----~~~~lG~~~i~l~~l~~~~-----~~~~W~~L~~  130 (134)
T 2b3r_A           96 SAES---LR----ENFFLGGITLPLKDFNLSK-----ETVKWYQLTA  130 (134)
T ss_dssp             ECCS---SS----CCEEEEEEEEEGGGSCTTS-----CEEEEEECBC
T ss_pred             ECCC---CC----CCcEEEEEEEEhhhccCCC-----CcceeEECCC
Confidence            9987   66    3899999999999997643     2467999975

>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.81  E-value=3e-19  Score=138.00  Aligned_cols=105  Identities=14%  Similarity=0.123  Sum_probs=89.7

Q ss_pred             ceEEEEEEEEeeCCCCCCCCCcCCcEEEEEECCC---CcEEEeeeecCCCCCCeeeeEEEEEecCC--CcEEEEEEEeCC
Q 040360            9 YRTIELTVLSGEDLRIDRRLIKKNAFAIVQTDTS---FDYCTTKVDESGGSHPSWNEKLVIELPMH--ARFITVQVQCKS   83 (198)
Q Consensus         9 ~~~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~---~~~~~T~v~~~~g~nP~WNE~f~f~v~~~--~~~L~~eV~~~~   83 (198)
                      .+.|.|+|++|++|+..+..++.||||+|++.++   ..+++|++++++ .||+|||+|.|.+...  ...|.|+|||++
T Consensus        30 ~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t-~nP~wne~f~f~v~~~~~~~~L~i~V~d~d  108 (149)
T 1a25_A           30 REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCS-LNPEWNETFRFQLKESDKDRRLSVEIWDWD  108 (149)
T ss_dssp             SSEEEEEEEEEESCCCCSTTSCCCEEEEEEEESCTTCSSCEECCCCSSC-SSCEEEEEEEEECCSGGGGCEEEEEEEECC
T ss_pred             CCEEEEEEEEeeCCCCCCCCCCcCeEEEEEEECCCCCcceEecceeCCC-CCCcCCcEEEEEeccccCCCEEEEEEEECC
Confidence            4789999999999988777889999999999852   367899999985 9999999999999753  368999999998


Q ss_pred             CCCCCCCCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEeeC
Q 040360           84 KSSSSGNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRN  127 (198)
Q Consensus        84 ~~~~~g~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~  127 (198)
                      .   ++    +|++||++.|+|.++..+.      ...||+|..
T Consensus       109 ~---~~----~~~~iG~~~i~l~~l~~~~------~~~W~~L~~  139 (149)
T 1a25_A          109 L---TS----RNDFMGSLSFGISELQKAG------VDGWFKLLS  139 (149)
T ss_dssp             S---SS----CCEEEEEEEEEHHHHTTCC------EEEEEECBC
T ss_pred             C---CC----CCCEEEEEEEEHHHhCcCc------cCCeEEccC
Confidence            7   66    3899999999999997642      357999976

>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.81  E-value=3.9e-19  Score=136.00  Aligned_cols=108  Identities=19%  Similarity=0.242  Sum_probs=90.3

Q ss_pred             cceEEEEEEEEeeCCCCCCCCCcCCcEEEEEECCC-CcEEEeeeecCCCCCCeeeeEEEEEe-cC---CCcEEEEEEEeC
Q 040360            8 GYRTIELTVLSGEDLRIDRRLIKKNAFAIVQTDTS-FDYCTTKVDESGGSHPSWNEKLVIEL-PM---HARFITVQVQCK   82 (198)
Q Consensus         8 ~~~~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~-~~~~~T~v~~~~g~nP~WNE~f~f~v-~~---~~~~L~~eV~~~   82 (198)
                      ..+.|+|+|++|++|+..+..++.||||+|++.++ ..+++|++++++ .||+|||+|.|.+ +.   ....|.|+|||+
T Consensus        24 ~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t-~nP~wne~f~f~~~~~~~~~~~~l~i~V~d~  102 (141)
T 2d8k_A           24 QESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKN-LNPHWNETFLFEGFPYEKVVQRILYLQVLDY  102 (141)
T ss_dssp             SSCCEEEEEEEEESCCCCSSSSCCCEEEEEEEESCCSSEEECCCCTTC-SSCCCCEEEEECSCCHHHHTTSEEEEEEEEC
T ss_pred             CCCEEEEEEEEeECCCCCCCCCCCCcEEEEEEECCCCccEeCceEcCC-CCCccccEEEECccCHHHcccCEEEEEEEEC
Confidence            45789999999999998777889999999999642 368899999875 9999999999985 32   247899999999


Q ss_pred             CCCCCCCCCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEeeCC
Q 040360           83 SKSSSSGNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRNA  128 (198)
Q Consensus        83 ~~~~~~g~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~~  128 (198)
                      +.   ++    +|++||++.|+|.++..+.     ....||+|...
T Consensus       103 d~---~~----~~~~iG~~~i~l~~l~~~~-----~~~~W~~L~~~  136 (141)
T 2d8k_A          103 DR---FS----RNDPIGEVSIPLNKVDLTQ-----MQTFWKDLKPS  136 (141)
T ss_dssp             CS---SS----SCEEEEEEEEETTTSCTTS-----CEEEEECCEEC
T ss_pred             CC---CC----CCcEEEEEEEEhhhhcCCC-----CccEEEECcCC
Confidence            87   66    3899999999999997653     24679999864

>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.81  E-value=5.1e-19  Score=137.27  Aligned_cols=108  Identities=15%  Similarity=0.160  Sum_probs=90.7

Q ss_pred             cceEEEEEEEEeeCCCCCCCCCcCCcEEEEEECCC-CcEEEeeeecCCCCCCeeeeEEEEEecC---CCcEEEEEEEeCC
Q 040360            8 GYRTIELTVLSGEDLRIDRRLIKKNAFAIVQTDTS-FDYCTTKVDESGGSHPSWNEKLVIELPM---HARFITVQVQCKS   83 (198)
Q Consensus         8 ~~~~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~-~~~~~T~v~~~~g~nP~WNE~f~f~v~~---~~~~L~~eV~~~~   83 (198)
                      ..+.|.|+|++|++|+..+..+..||||+|++.++ .++++|++++++ .||+|||+|.|.++.   ....|.|+|||++
T Consensus        40 ~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t-~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d  118 (152)
T 1rsy_A           40 QNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKT-LNPVFNEQFTFKVPYSELGGKTLVMAVYDFD  118 (152)
T ss_dssp             TTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETTCCSCEECCCCTTC-SSCEEEEEEEECCCHHHHTTCEEEEEEEECC
T ss_pred             CCCEEEEEEEEeECCCCccCCCCcCeEEEEEEEcCCCceEeccccCCC-CCCcCcccEEEeecHHHcCCCEEEEEEEECC
Confidence            45789999999999988777889999999999642 367899999986 999999999999864   2578999999998


Q ss_pred             CCCCCCCCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEeeCC
Q 040360           84 KSSSSGNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRNA  128 (198)
Q Consensus        84 ~~~~~g~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~~  128 (198)
                      .   ++    +|++||++.|+|.++..+.     ....||+|...
T Consensus       119 ~---~~----~~~~iG~~~i~l~~l~~~~-----~~~~W~~L~~~  151 (152)
T 1rsy_A          119 R---FS----KHDIIGEFKVPMNTVDFGH-----VTEEWRDLQSA  151 (152)
T ss_dssp             S---SS----CCEEEEEEEEEGGGCCCSS-----CEEEEEECBCC
T ss_pred             C---CC----CCcEEEEEEEEchhccCCC-----CcceEEECCCC
Confidence            7   66    3899999999999996543     24579999753

>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.7.1.2 PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A*

Probab=99.81  E-value=2.5e-19  Score=137.20  Aligned_cols=107  Identities=14%  Similarity=0.157  Sum_probs=89.7

Q ss_pred             cceEEEEEEEEeeCCCCCCCCCcCCcEEEEEECCC-CcEEEeeeecCCCCCCeeeeEEEEEecCC---CcEEEEEEEeCC
Q 040360            8 GYRTIELTVLSGEDLRIDRRLIKKNAFAIVQTDTS-FDYCTTKVDESGGSHPSWNEKLVIELPMH---ARFITVQVQCKS   83 (198)
Q Consensus         8 ~~~~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~-~~~~~T~v~~~~g~nP~WNE~f~f~v~~~---~~~L~~eV~~~~   83 (198)
                      ..+.|.|+|++|++|+..+..++.||||+|.+.++ .++++|++++++ .||+|||+|.|.++..   ...|.|+|||++
T Consensus        32 ~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t-~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d  110 (143)
T 3f04_A           32 QNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKT-LNPVFNEQFTFKVPYSELGGKTLVMAVYDFD  110 (143)
T ss_dssp             TTTEEEEEEEEEECCCCBGGGBCCCEEEEEEEESCCSCCEECCCCCSC-SSCEEEEEEEECCCHHHHTTCEEEEEEEECC
T ss_pred             CCCEEEEEEEEecCCCCCCCCCCcCcEEEEEEECCCCccEECccCcCC-CCCcCcCeEEEeecHhhcCCCEEEEEEEeCC
Confidence            45789999999999988777788999999999542 368899999987 9999999999998643   379999999998


Q ss_pred             CCCCCCCCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEeeC
Q 040360           84 KSSSSGNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRN  127 (198)
Q Consensus        84 ~~~~~g~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~  127 (198)
                      .   ++    +|++||++.|+|.++..+.     ....||+|..
T Consensus       111 ~---~~----~~~~iG~~~i~l~~l~~~~-----~~~~W~~L~~  142 (143)
T 3f04_A          111 R---FS----KHDIIGEFKVPMNTVDFGH-----VTEEWRDLQS  142 (143)
T ss_dssp             S---SS----CCEEEEEEEEEGGGCCTTS-----CEEEEEECBC
T ss_pred             C---CC----CCceEEEEEEEHHHccCCC-----CcceEEECcC
Confidence            7   66    3899999999999997653     2457999863

>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.80  E-value=6.6e-19  Score=134.27  Aligned_cols=108  Identities=10%  Similarity=0.155  Sum_probs=88.6

Q ss_pred             cceEEEEEEEEeeCCCCCCCC-CcCCcEEEEEECCC-CcEEEeeeecCCCCCCeeeeEEEEE-ecCC---CcEEEEEEEe
Q 040360            8 GYRTIELTVLSGEDLRIDRRL-IKKNAFAIVQTDTS-FDYCTTKVDESGGSHPSWNEKLVIE-LPMH---ARFITVQVQC   81 (198)
Q Consensus         8 ~~~~LeVtVlsA~~L~~~~~~-~~~dpYvvv~~~~~-~~~~~T~v~~~~g~nP~WNE~f~f~-v~~~---~~~L~~eV~~   81 (198)
                      ..+.|.|+|++|++|+..+.. ++.||||+|++.++ .++++|++++++ .||+|||+|.|. ++..   ...|.|+|||
T Consensus        20 ~~~~L~v~v~~a~~L~~~d~~~~~~dpyv~v~~~~~~~~~~kT~v~~~t-~nP~wne~f~f~~v~~~~~~~~~l~i~V~d   98 (138)
T 1ugk_A           20 ERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKT-LDPAFDETFTFYGIPYTQIQELALHFTILS   98 (138)
T ss_dssp             GGTEEEEEEEEEESCCCCBTTTTBCEEEEEEEEETTTCSEEECCCCSSC-SSCEEEEEEEEECCCSTTGGGCEEEEEEEE
T ss_pred             CCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEecCCCceEecCcCcCC-CCCcEeeEEEEcCcCHHHhccCEEEEEEEE
Confidence            357899999999999877765 88999999999752 378899999976 999999999996 7652   4689999999


Q ss_pred             CCCCCCCCCCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEeeC
Q 040360           82 KSKSSSSGNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRN  127 (198)
Q Consensus        82 ~~~~~~~g~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~  127 (198)
                      ++.   ++    +|++||++.|+|.++..+.  .  ....|+.|..
T Consensus        99 ~d~---~~----~~~~lG~~~i~l~~l~~~~--~--~~~~~~~l~~  133 (138)
T 1ugk_A           99 FDR---FS----RDDIIGEVLIPLSGIELSE--G--KMLMNREIIS  133 (138)
T ss_dssp             ECS---SC----CCCCCEEEEEECTTCCCTT--C--CEEEEEECBS
T ss_pred             CCC---CC----CCcEEEEEEEehhHccCCC--C--cchhhhhhhc
Confidence            987   66    3899999999999997653  1  1346788875

>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.80  E-value=1.7e-19  Score=137.25  Aligned_cols=114  Identities=15%  Similarity=0.222  Sum_probs=91.0

Q ss_pred             ceEEEEEEEEeeCCCCCCCCCcCCcEEEEEECCC---CcEEEeeeecCCCCCCeeeeEEEEEe-cC---CCcEEEEEEEe
Q 040360            9 YRTIELTVLSGEDLRIDRRLIKKNAFAIVQTDTS---FDYCTTKVDESGGSHPSWNEKLVIEL-PM---HARFITVQVQC   81 (198)
Q Consensus         9 ~~~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~---~~~~~T~v~~~~g~nP~WNE~f~f~v-~~---~~~~L~~eV~~   81 (198)
                      .+.|.|+|++|++|+..+..++.||||+|++.++   ..+++|++++++ .||+|||+|.|.+ +.   ....|.|+|||
T Consensus        20 ~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~~~~~t-~nP~wne~f~f~~~~~~~~~~~~l~i~V~d   98 (141)
T 1v27_A           20 GHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKT-LEPKWNQTFIYSPVHRREFRERMLEITLWD   98 (141)
T ss_dssp             TTEEEEEEEEEESCCCCSSSCCCCEEEECCCSSCCSSSSCCBCCCCSSC-SSCCCCCCCEECSCCTTGGGTCEEEEEEEE
T ss_pred             CCEEEEEEEEccCCCCcCCCCCCCCEEEEEEecCCCCCcceeCccccCC-CCCccccEEEEccCCHHHhcCCEEEEEEEE
Confidence            4789999999999988777889999999999431   367899999986 9999999999994 43   24799999999


Q ss_pred             CCCCCCCCCCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEeeCC-CCCccE
Q 040360           82 KSKSSSSGNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRNA-KGDKNG  134 (198)
Q Consensus        82 ~~~~~~~g~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~~-~Gk~~G  134 (198)
                      ++.   +++  +++++||++.|+|.++....      ...||+|... +|+..|
T Consensus        99 ~d~---~~~--~~~~~lG~~~i~l~~l~~~~------~~~W~~L~~~~~g~~sg  141 (141)
T 1v27_A           99 QAR---VRE--EESEFLGEILIELETALLDD------EPHWYKLQTHDSGPSSG  141 (141)
T ss_dssp             BCS---SSS--CCBCCCEEEEEEGGGCCCSS------EEEEEECBCCSSCCCCC
T ss_pred             CCC---CcC--CCCceEEEEEEEccccCCCC------CCceEECcccccCCCCC
Confidence            987   541  12889999999999986532      4579999874 344443

>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.80  E-value=2.3e-19  Score=137.29  Aligned_cols=115  Identities=11%  Similarity=0.096  Sum_probs=91.1

Q ss_pred             cceEEEEEEEEeeCCCCCCCCCcCCcEEEEEECCC---CcEEEeeeecCCCCCCeeeeEEEEEecCC---CcEEEEEEEe
Q 040360            8 GYRTIELTVLSGEDLRIDRRLIKKNAFAIVQTDTS---FDYCTTKVDESGGSHPSWNEKLVIELPMH---ARFITVQVQC   81 (198)
Q Consensus         8 ~~~~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~---~~~~~T~v~~~~g~nP~WNE~f~f~v~~~---~~~L~~eV~~   81 (198)
                      ..+.|.|+|++|++|+..+..+ .||||+|++.++   ..+++|++++++ .||+|||+|.|.++..   ...|.|+|||
T Consensus        22 ~~~~L~v~v~~a~~L~~~d~~g-~dpyv~v~l~~~~~~~~~~kT~v~~~t-~nP~wne~f~f~v~~~~l~~~~L~i~V~d   99 (142)
T 2dmg_A           22 QRNKLIVVVHACRNLIAFSEDG-SDPYVRMYLLPDKRRSGRRKTHVSKKT-LNPVFDQSFDFSVSLPEVQRRTLDVAVKN   99 (142)
T ss_dssp             TTTEEEEEEEEEECCCCSSTTC-CCEEEEEEEESCCCSSSCEECCCCCSC-SSCEEEEEEEECCCHHHHHHCEEEEEEEE
T ss_pred             CCCEEEEEEEEeECCCCCCCCC-CCeeEEEEEEcCCCCCCcccCCccCCC-CCCCcCceEEEEecHHHhCcCEEEEEEEE
Confidence            3578999999999998877777 999999999642   267899999986 9999999999998652   3589999999


Q ss_pred             CCCCCCCCCCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEeeCCCCCccE
Q 040360           82 KSKSSSSGNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRNAKGDKNG  134 (198)
Q Consensus        82 ~~~~~~~g~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~~~Gk~~G  134 (198)
                      ++.   ++.  .+|++||.+.|+|.++..+..     ...||+|....++..|
T Consensus       100 ~d~---~~~--~~~~~iG~~~i~l~~~~~~~~-----~~~W~~L~~~~~~~~G  142 (142)
T 2dmg_A          100 SGG---FLS--KDKGLLGKVLVALASEELAKG-----WTQWYDLTEDSGPSSG  142 (142)
T ss_dssp             CCC---SSC--CSCCCCEEEEEECCCSTTTTC-----BCCBCCCBCSCSCCCC
T ss_pred             CCC---ccc--cCCcEEEEEEEeccccccccc-----ccceeeccCCCCCCCC
Confidence            986   541  015799999999999875431     3469999876555444

>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.80  E-value=5.5e-19  Score=132.73  Aligned_cols=106  Identities=14%  Similarity=0.182  Sum_probs=83.5

Q ss_pred             cceEEEEEEEEeeCCCCCCCCCcCCcEEEEEECCC---CcEEEeeeecCCCCCCeeeeEEEEEe-cC---CCcEEEEEEE
Q 040360            8 GYRTIELTVLSGEDLRIDRRLIKKNAFAIVQTDTS---FDYCTTKVDESGGSHPSWNEKLVIEL-PM---HARFITVQVQ   80 (198)
Q Consensus         8 ~~~~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~---~~~~~T~v~~~~g~nP~WNE~f~f~v-~~---~~~~L~~eV~   80 (198)
                      ..+.|.|+|++|++|+..+..++.||||++++.++   ..+++|++++++ .||+|||+|.|.+ +.   ....|.|+||
T Consensus        16 ~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~~kT~v~~~t-~nP~wne~f~f~~~~~~~~~~~~l~~~V~   94 (129)
T 2bwq_A           16 VGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKT-LEPKWNQTFIYSPVHRREFRERMLEITLW   94 (129)
T ss_dssp             TTTEEEEEEEEEESCCCCTTSCCBCEEEEEEEESSCSGGGEEECCCCSSB-SSCEEEEEEEECSCCGGGGGGCEEEEEEE
T ss_pred             CCCEEEEEEEEeeCCCCCCCCCCCCCEEEEEEecCCCCCcceecccccCC-CCCccccEEEEccCCHHHhcCCeEEEEEE
Confidence            34789999999999998787889999999999431   378899999986 9999999999995 32   2469999999


Q ss_pred             eCCCCCCCCCCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEe
Q 040360           81 CKSKSSSSGNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRL  125 (198)
Q Consensus        81 ~~~~~~~~g~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L  125 (198)
                      |++.   +++  .++++||++.|+|.++....      ...||+|
T Consensus        95 d~d~---~~~--~~~~~lG~~~i~l~~l~~~~------~~~W~~L  128 (129)
T 2bwq_A           95 DQAR---VRE--EESEFLGEILIELETALLDD------EPHWYKL  128 (129)
T ss_dssp             EC------------CEEEEEEEEEGGGCCCSS------CEEEEEC
T ss_pred             ECCc---CcC--cCCceeEEEEEEccccCCCc------CCccEEC
Confidence            9987   541  01889999999999987542      3469987

>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.79  E-value=1.1e-19  Score=138.88  Aligned_cols=108  Identities=17%  Similarity=0.153  Sum_probs=89.2

Q ss_pred             ceEEEEEEEEeeCCCCCCCCCcCCcEEEEEECCCC------------cEEEeeeecCCCCCCeeeeEEEEE-ecC---CC
Q 040360            9 YRTIELTVLSGEDLRIDRRLIKKNAFAIVQTDTSF------------DYCTTKVDESGGSHPSWNEKLVIE-LPM---HA   72 (198)
Q Consensus         9 ~~~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~~------------~~~~T~v~~~~g~nP~WNE~f~f~-v~~---~~   72 (198)
                      .+.|.|+|++|++|+..+..++.||||+|++.+..            .+++|++++++ .||+|||+|.|. ++.   ..
T Consensus        17 ~~~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~~~~~~~~~~~~~~kT~v~~~t-~nP~wne~f~f~~v~~~~l~~   95 (142)
T 1rh8_A           17 LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKS-LNPEWNQTVIYKSISMEQLMK   95 (142)
T ss_dssp             TTEEEEEEEEEESCCCCSSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHHH-HSCEEEEEEEECSCCHHHHTT
T ss_pred             CCEEEEEEEEecCCCCCCCCCCCCceEEEEEecCCCcccccccccccceeeccccCCC-CCCCCCCEEEECCcCHHHccC
Confidence            46899999999999987778899999999998731            24789998875 999999999997 653   35


Q ss_pred             cEEEEEEEeCCCCCCCCCCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEeeCCC
Q 040360           73 RFITVQVQCKSKSSSSGNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRNAK  129 (198)
Q Consensus        73 ~~L~~eV~~~~~~~~~g~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~~~  129 (198)
                      ..|.|+|||++.   +++    |++||.+.|+|.++..+..     ...||+|...+
T Consensus        96 ~~l~i~V~d~d~---~~~----~~~lG~~~i~l~~l~~~~~-----~~~W~~L~~~~  140 (142)
T 1rh8_A           96 KTLEVTVWDYDR---FSS----NDFLGEVLIDLSSTSHLDN-----TPRWYPLKEQT  140 (142)
T ss_dssp             CEEEEEEEEECS---SSC----EEEEEEEEEETTSCGGGTT-----CCEEEECBCCC
T ss_pred             CEEEEEEEECCC---CCC----CceEEEEEEeccccccCCC-----CCeEEECCccC
Confidence            799999999987   663    8999999999999976432     24799998644

>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} SCOP: b.7.1.0

Probab=99.79  E-value=2.4e-19  Score=139.40  Aligned_cols=119  Identities=12%  Similarity=0.137  Sum_probs=92.2

Q ss_pred             cceEEEEEEEEeeCCCCCCCCCcCCcEEEEEECCC---CcEEEeeeecCCCCCCeeeeEEEEEecC--CCcEEEEEEEeC
Q 040360            8 GYRTIELTVLSGEDLRIDRRLIKKNAFAIVQTDTS---FDYCTTKVDESGGSHPSWNEKLVIELPM--HARFITVQVQCK   82 (198)
Q Consensus         8 ~~~~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~---~~~~~T~v~~~~g~nP~WNE~f~f~v~~--~~~~L~~eV~~~   82 (198)
                      ..+.|.|+|++|++|+..+ .+..||||+|.+.++   ..+++|++++++ .||+|||+|.|.++.  ....|.|+|||+
T Consensus        25 ~~~~L~V~v~~a~~L~~~d-~g~~Dpyv~v~l~~~~~~~~~~kT~v~~~t-~nP~wne~f~f~v~~~~~~~~L~i~V~d~  102 (153)
T 3fbk_A           25 QDRVLLLHIIEGKGLISKQ-PGTCDPYVKISLIPEDSRLRHQKTQTVPDC-RDPAFHEHFFFPVQEEDDQKRLLVTVWNR  102 (153)
T ss_dssp             SSSEEEEEEEEEESCCCCS-SSCCCEEEEEEEESCSCCTTCEECCCCTTC-SSCEEEEEEEEECCGGGTTSEEEEEEEEC
T ss_pred             CCCEEEEEEEEeeCCCCCC-CCCCCEEEEEEEEcCCCCccEEeccccCCC-CCCccccEEEEecccHHhCCEEEEEEEeC
Confidence            4588999999999998766 588999999999542   367899999986 999999999999943  335699999998


Q ss_pred             CCCCCCCCCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEeeCCCCCccEEEEE
Q 040360           83 SKSSSSGNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRNAKGDKNGIINV  138 (198)
Q Consensus        83 ~~~~~~g~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~~~Gk~~G~I~l  138 (198)
                      +.   +++   +|++||++.|+|.++....    .....||.|........+.+.+
T Consensus       103 d~---~~~---~d~~lG~~~i~l~~l~~~~----~~~~~W~~L~~~~~g~~~~lkv  148 (153)
T 3fbk_A          103 AS---QSR---QSGLIGCMSFGVKSLLTPD----KEISGWYYLLGEHLGRTKHLKV  148 (153)
T ss_dssp             CS---SGG---GCEEEEEEEEEHHHHTC------CCEEEEEECBCTTGGGTCCCBC
T ss_pred             CC---CCC---CCcEEEEEEEEHHHhcCCC----CccccEEECCChhhccccccee
Confidence            87   541   2799999999999997421    1245799998765434444443

>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus}

Probab=99.79  E-value=6e-19  Score=139.97  Aligned_cols=108  Identities=15%  Similarity=0.154  Sum_probs=90.3

Q ss_pred             ceEEEEEEEEeeCCCCCCC-CCcCCcEEEEEECCCC---cEEEeeeecCCCCCCeeeeEEEEEecCCCcEEEEEEE-eCC
Q 040360            9 YRTIELTVLSGEDLRIDRR-LIKKNAFAIVQTDTSF---DYCTTKVDESGGSHPSWNEKLVIELPMHARFITVQVQ-CKS   83 (198)
Q Consensus         9 ~~~LeVtVlsA~~L~~~~~-~~~~dpYvvv~~~~~~---~~~~T~v~~~~g~nP~WNE~f~f~v~~~~~~L~~eV~-~~~   83 (198)
                      .+.|.|+|++|++|+..+. .+..||||+|.+.++.   .+++|++++++ .||+|||+|.|.+......|.|+|| |++
T Consensus        29 ~~~L~V~v~~a~~L~~~d~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t-~nP~wne~f~f~v~~~~~~L~~~V~~d~d  107 (171)
T 2q3x_A           29 KGQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIARKT-LDPLYQQSLVFDESPQGKVLQVIVWGDYG  107 (171)
T ss_dssp             TTEEEEEEEEEESCCCCC---CCCEEEEEEEEEETTEEEEEEECCCCCSC-SSCEEEEEEECSSCCTTEEEEEEEEEECS
T ss_pred             CCEEEEEEEEeeCCCCCCcCCCCCCceEEEEEECCCccccceeCccCCCC-CCCCCCcEEEEEecCCCCEEEEEEEEcCC
Confidence            4789999999999987664 6889999999998632   37899999986 9999999999999877789999999 888


Q ss_pred             CCCCCCCCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEeeCCC
Q 040360           84 KSSSSGNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRNAK  129 (198)
Q Consensus        84 ~~~~~g~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~~~  129 (198)
                      .   ++    +|++||.+.|+|.++..+.     ....||+|...+
T Consensus       108 ~---~~----~d~~iG~~~i~l~~l~~~~-----~~~~W~~L~~~~  141 (171)
T 2q3x_A          108 R---MD----HKCFMGVAQILLEELDLSS-----MVIGWYKLFPPS  141 (171)
T ss_dssp             T---TC----SSEEEEEEEECGGGSCTTS-----CEEEEEECBCGG
T ss_pred             C---CC----CCCEEEEEEEEHHHcccCC-----CcceeEECCCcc
Confidence            7   66    3899999999999997543     246799998754

>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens}

Probab=99.79  E-value=3.5e-19  Score=137.49  Aligned_cols=108  Identities=16%  Similarity=0.165  Sum_probs=89.7

Q ss_pred             ceEEEEEEEEeeCCCCCC-CCCcCCcEEEEEECCC---CcEEEeeeecCCCCCCeeeeEEEEEecCC---CcEEEEEEEe
Q 040360            9 YRTIELTVLSGEDLRIDR-RLIKKNAFAIVQTDTS---FDYCTTKVDESGGSHPSWNEKLVIELPMH---ARFITVQVQC   81 (198)
Q Consensus         9 ~~~LeVtVlsA~~L~~~~-~~~~~dpYvvv~~~~~---~~~~~T~v~~~~g~nP~WNE~f~f~v~~~---~~~L~~eV~~   81 (198)
                      .+.|.|+|++|++|+..+ ..++.||||++.+.++   ..+++|++.+++ .||+|||+|.|.++..   ...|.|+|||
T Consensus        22 ~~~L~V~v~~a~~L~~~d~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t-~nP~wne~f~f~v~~~~~~~~~L~~~V~d  100 (148)
T 3fdw_A           22 TQSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIKRDT-VNPLYDETLRYEIPESLLAQRTLQFSVWH  100 (148)
T ss_dssp             TTEEEEEEEEEESCCCSBTTTTBCCEEEEEEEETCCSGGGEEECCCCSSC-SSCEEEEEEEEECCSTTGGGCEEEEEEEE
T ss_pred             CCEEEEEEEEecCCCCcccCCCCCCeEEEEEEEcCCcccCccccccCCCC-CCCcEeeEEEEEeChhHhCceEEEEEEEE
Confidence            478999999999998655 5688999999999853   248899999986 9999999999999763   4579999999


Q ss_pred             CCCCCCCCCCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEeeCCC
Q 040360           82 KSKSSSSGNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRNAK  129 (198)
Q Consensus        82 ~~~~~~~g~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~~~  129 (198)
                      ++.   ++    +|++||++.|+|.++..+..     ...||+|..+.
T Consensus       101 ~d~---~~----~~~~iG~~~i~l~~l~~~~~-----~~~W~~L~~~~  136 (148)
T 3fdw_A          101 HGR---FG----RNTFLGEAEIQMDSWKLDKK-----LDHCLPLHGKI  136 (148)
T ss_dssp             ECG---GG----CEEEEEEEEEEHHHHHHHCC-----SEEEEECBCC-
T ss_pred             CCC---Cc----CCcEEEEEEEEcccccccCC-----ccceEECcCcc
Confidence            987   66    38999999999999976531     34799998754

>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A

Probab=99.79  E-value=1.1e-18  Score=133.51  Aligned_cols=107  Identities=16%  Similarity=0.235  Sum_probs=89.1

Q ss_pred             cceEEEEEEEEeeCCCCCCCCCcCCcEEEEEECCC---CcEEEeeeecCCCCCCeeeeEEEEE-ecCC---CcEEEEEEE
Q 040360            8 GYRTIELTVLSGEDLRIDRRLIKKNAFAIVQTDTS---FDYCTTKVDESGGSHPSWNEKLVIE-LPMH---ARFITVQVQ   80 (198)
Q Consensus         8 ~~~~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~---~~~~~T~v~~~~g~nP~WNE~f~f~-v~~~---~~~L~~eV~   80 (198)
                      ..+.|.|+|++|++|+..+..++.||||+|++.++   ..+++|++++++ .||+|||+|.|. ++..   ...|.|+||
T Consensus        27 ~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t-~nP~wne~f~f~~~~~~~~~~~~l~i~V~  105 (142)
T 2chd_A           27 DNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNT-RNPVWNETLQYHGITEEDMQRKTLRISVC  105 (142)
T ss_dssp             GGTEEEEEEEEEESCCCCCTTSCCCEEEEEEEESCCSGGGEEECCCCCSC-SSCEEEEEEEEESCCHHHHHHCEEEEEEE
T ss_pred             CCCEEEEEEEEecCCCCCCCCCCCCCEEEEEEEcCCCCcceeeCCcCCCC-CCCcCcCEEEEcccCHHHccCCEEEEEEE
Confidence            45789999999999998777889999999999752   368899999975 999999999999 6542   368999999


Q ss_pred             eCCCCCCCCCCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEeeC
Q 040360           81 CKSKSSSSGNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRN  127 (198)
Q Consensus        81 ~~~~~~~~g~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~  127 (198)
                      |++.   ++    +|++||++.|+|.++..+.     .+..|+.|..
T Consensus       106 d~d~---~~----~d~~iG~~~i~l~~l~~~~-----~~~~~~~L~~  140 (142)
T 2chd_A          106 DEDK---FG----HNEFIGETRFSLKKLKANQ-----RKNFNICLER  140 (142)
T ss_dssp             EECT---TS----CEEEEEEEEEEGGGCCTTC-----CEEEEEECBC
T ss_pred             ECCC---CC----CCcEEEEEEEEHHHcCCCC-----ccEEEEeccc
Confidence            9987   66    3899999999999997653     2456777764

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2

Probab=99.79  E-value=3.1e-18  Score=144.57  Aligned_cols=124  Identities=17%  Similarity=0.178  Sum_probs=102.8

Q ss_pred             cceEEEEEEEEeeCCCCCCCCCcCCcEEEEEECCC-CcEEEeeeecCCCCCCeeeeEEEEEecCC---CcEEEEEEEeCC
Q 040360            8 GYRTIELTVLSGEDLRIDRRLIKKNAFAIVQTDTS-FDYCTTKVDESGGSHPSWNEKLVIELPMH---ARFITVQVQCKS   83 (198)
Q Consensus         8 ~~~~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~-~~~~~T~v~~~~g~nP~WNE~f~f~v~~~---~~~L~~eV~~~~   83 (198)
                      ..+.|.|+|++|++|...+..++.||||+|.+.+. .++++|++++++ .||.|||+|.|.++..   ...|.|+|||++
T Consensus        17 ~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~T~~~~~~-~nP~wne~f~f~v~~~~~~~~~l~~~V~d~d   95 (284)
T 2r83_A           17 QNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKT-LNPVFNEQFTFKVPYSELAGKTLVMAVYDFD   95 (284)
T ss_dssp             TTTEEEEEEEEEECCCCCSSSSSCCEEEEEEEETCTTSCEECCCCCSC-SSCEEEEEEEECCCGGGCTTCEEEEEEEECC
T ss_pred             CCCEEEEEEEEeeCCCCCCCCCCCCeEEEEEEEcCCCceEeCCcccCC-CCCeeCceEEEEechHHhCcCEEEEEEEECC
Confidence            45799999999999988777789999999999753 357899999986 9999999999998652   479999999998


Q ss_pred             CCCCCCCCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEeeCCCC---CccEEEEEEEEEeee
Q 040360           84 KSSSSGNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRNAKG---DKNGIINVSVRSLKV  145 (198)
Q Consensus        84 ~~~~~g~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~~~G---k~~G~I~lsi~~f~~  145 (198)
                      .   ++    +|++||++.|+|.++..+.     ....||+|....+   ...|.|+++++ +.+
T Consensus        96 ~---~~----~~~~lG~~~i~l~~l~~~~-----~~~~w~~L~~~~~~~~~~~G~i~l~l~-~~p  147 (284)
T 2r83_A           96 R---FS----KHDIIGEFKVPMNTVDFGH-----VTEEWRDLQSAEKEEQEKLGDICFSLR-YVP  147 (284)
T ss_dssp             S---SS----CCCEEEEEEEEGGGCCCSS-----CEEEEEECBCCSSCCCCCCCEEEEEEE-EET
T ss_pred             C---CC----CCceeEEEEEcchhcccCC-----cceeEEEeeccccccccccccEEEEEE-ecC
Confidence            7   66    3899999999999997643     2457999987543   36799999888 654

>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens}

Probab=99.79  E-value=4.5e-19  Score=139.31  Aligned_cols=106  Identities=12%  Similarity=0.085  Sum_probs=88.8

Q ss_pred             ceEEEEEEEEeeCCCCCCCCCcCCcEEEEEECCC----CcEEEeeeecCCCCCCeeeeEEEEEecCC---CcEEEEEEEe
Q 040360            9 YRTIELTVLSGEDLRIDRRLIKKNAFAIVQTDTS----FDYCTTKVDESGGSHPSWNEKLVIELPMH---ARFITVQVQC   81 (198)
Q Consensus         9 ~~~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~----~~~~~T~v~~~~g~nP~WNE~f~f~v~~~---~~~L~~eV~~   81 (198)
                      .+.|.|+|++|++|...+..++.||||++++.+.    ..+++|++++++ .||+|||+|.|.++..   ...|.|+|||
T Consensus        42 ~~~L~V~Vi~a~~L~~~d~~g~sDPyVkv~l~~~~~~~~~~~kT~v~~~t-lnP~wnE~F~f~v~~~~l~~~~L~~~V~d  120 (155)
T 2z0u_A           42 NKQFAILIIQLSNLSALLQQQDQKVNIRVAVLPCSESTTCLFRTRPLDAS-DTLVFNEVFWVSMSYPALHQKTLRVDVCT  120 (155)
T ss_dssp             TTEEEEEEEEEECGGGTCCSCCSEEEEEEEEESCSCHHHHEEECCCEECC-SSEEEEEEEEEECCHHHHHHCEEEEEEEE
T ss_pred             CCEEEEEEEEccCcCCcccCCCCCEEEEEEEecCCCCCccceeCCcCCCC-CCCccccEEEEEcCHHHhCcCEEEEEEEE
Confidence            4789999999999988788889999999999762    237899999987 9999999999998753   4689999999


Q ss_pred             CCCCCCCCCCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEee
Q 040360           82 KSKSSSSGNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLR  126 (198)
Q Consensus        82 ~~~~~~~g~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~  126 (198)
                      ++.   ++    ++++||++.|+|.++....    .....||+|.
T Consensus       121 ~d~---~~----~~d~iG~~~i~l~~l~~~~----~~~~~W~~L~  154 (155)
T 2z0u_A          121 TDR---SH----LEECLGGAQISLAEVCRSG----ERSTRWYNLL  154 (155)
T ss_dssp             ECT---TS----CEEEEEEEEEECTTSCTTC----CCEEEEEEEB
T ss_pred             CCC---CC----CCcEEEEEEEEHHHccCCC----CccccceEcc
Confidence            987   66    3999999999999995321    1246799985

>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus}

Probab=99.78  E-value=1.2e-18  Score=132.01  Aligned_cols=94  Identities=15%  Similarity=0.181  Sum_probs=81.0

Q ss_pred             cceEEEEEEEEeeCCCCCCCCCcCCcEEEEEECCC---CcEEEeeeecCCCCCCeeeeEEEEEecCCC---cEEEEEEEe
Q 040360            8 GYRTIELTVLSGEDLRIDRRLIKKNAFAIVQTDTS---FDYCTTKVDESGGSHPSWNEKLVIELPMHA---RFITVQVQC   81 (198)
Q Consensus         8 ~~~~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~---~~~~~T~v~~~~g~nP~WNE~f~f~v~~~~---~~L~~eV~~   81 (198)
                      ..+.|.|+|++|++|+..+..++.||||++++.++   ..+++|++++++ .||+|||+|.|.++...   ..|.|+|||
T Consensus        14 ~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~~~~~t-~nP~wne~f~f~v~~~~l~~~~l~~~V~d   92 (138)
T 3n5a_A           14 SANSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRN-LNPIFNESFAFDIPTEKLRETTIIITVMD   92 (138)
T ss_dssp             TTTEEEEEEEEEESCCCCBTTTBCCEEEEEEEEETTEEEEEEECCCCSSC-SSCEEEEEEEEECCGGGGGGEEEEEEEEE
T ss_pred             CCCeEEEEEEEeeCCCCcCCCCCcCeEEEEEEEeCCCccceEeCccccCC-CCCcCcceEEEECChhhcCceEEEEEEEE
Confidence            35789999999999998777889999999999862   247889999987 99999999999997643   689999999


Q ss_pred             CCCCCCCCCCCCCCceeEEEEEeCcccc
Q 040360           82 KSKSSSSGNNNNHNKIVGFARIPVSDFI  109 (198)
Q Consensus        82 ~~~~~~~g~~~~~d~~IG~a~IpL~~l~  109 (198)
                      ++.   ++    +|++||++.|+|.++.
T Consensus        93 ~~~---~~----~~~~lG~~~i~l~~~~  113 (138)
T 3n5a_A           93 KDK---LS----RNDVIGKIYLSWKSGP  113 (138)
T ss_dssp             CCS---SS----CCEEEEEEEESSSSCH
T ss_pred             CCC---CC----CCcEEEEEEEccccCC
Confidence            987   66    3899999999999754

>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.78  E-value=5.4e-19  Score=136.11  Aligned_cols=107  Identities=15%  Similarity=0.163  Sum_probs=86.1

Q ss_pred             cceEEEEEEEEeeCCCCC-C------CCCcCCcEEEEEECCC-CcEEEeeeecCCCCCCeeeeEEEEEecCC---CcEEE
Q 040360            8 GYRTIELTVLSGEDLRID-R------RLIKKNAFAIVQTDTS-FDYCTTKVDESGGSHPSWNEKLVIELPMH---ARFIT   76 (198)
Q Consensus         8 ~~~~LeVtVlsA~~L~~~-~------~~~~~dpYvvv~~~~~-~~~~~T~v~~~~g~nP~WNE~f~f~v~~~---~~~L~   76 (198)
                      ..+.|.|+|++|++|+.. +      ..++.||||+|++.++ ..+++|++.+++ .||+|||+|.|.++..   ...|.
T Consensus        24 ~~~~L~V~v~~a~~L~~~~d~~g~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~~t-~nP~wne~f~f~v~~~~l~~~~L~  102 (147)
T 2enp_A           24 LHNHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQKNSKQTGVKRKT-QKPVFEERYTFEIPFLEAQRRTLL  102 (147)
T ss_dssp             TTTEEEEEEEEEECCCCSCSSCCSSCTTCCCCCEEEEEEETCCSSCEECCCCCSC-SSCCCCBCCEECCCHHHHHHSEEE
T ss_pred             CCCEEEEEEEEEeCCCCccccccccccCCCCCcEEEEEEEeCCCcceEeecccCC-CCCeEeeeEEEEeChHHhccCEEE
Confidence            357899999999999863 2      2458999999999753 357899999886 9999999999998752   35899


Q ss_pred             EEEEeCCCCCCCCCCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEeeC
Q 040360           77 VQVQCKSKSSSSGNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRN  127 (198)
Q Consensus        77 ~eV~~~~~~~~~g~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~  127 (198)
                      |+|||++.   ++    ++++||++.|+|.++..+..     ...||.|..
T Consensus       103 ~~V~d~d~---~~----~~~~iG~~~i~l~~l~~~~~-----~~~w~~L~~  141 (147)
T 2enp_A          103 LTVVDFDK---FS----RHCVIGKVSVPLCEVDLVKG-----GHWWKALIP  141 (147)
T ss_dssp             EEEECCST---TC----CSCCCEEEEEETTTSCTTTC-----CCEEECCBC
T ss_pred             EEEEECCC---Cc----CCcEEEEEEEechhcCCCCC-----ccEEEEeec
Confidence            99999987   66    38899999999999965431     246888874

>3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus}

Probab=99.78  E-value=3.3e-18  Score=133.22  Aligned_cols=116  Identities=16%  Similarity=0.156  Sum_probs=97.8

Q ss_pred             eEEEEEEEEeeCCCCCCCCCcCCcEEEEEECCCCcEEEeeeecCCCCCCeeeeEEEEEecC---CCcEEEEEEEeCCCCC
Q 040360           10 RTIELTVLSGEDLRIDRRLIKKNAFAIVQTDTSFDYCTTKVDESGGSHPSWNEKLVIELPM---HARFITVQVQCKSKSS   86 (198)
Q Consensus        10 ~~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~~~~~~T~v~~~~g~nP~WNE~f~f~v~~---~~~~L~~eV~~~~~~~   86 (198)
                      ..|.|+|.+|.+|+     ++.|||+.+.+-+  .+++|+++++++.||+|||.|.|++..   ..+.|.|+|++++.  
T Consensus        21 msL~V~l~~a~~Lp-----g~~Dp~akv~FRg--~k~kTkvi~~~~~npvfnE~F~wpl~~~ld~~e~L~v~V~d~~~--   91 (144)
T 3l9b_A           21 MALIVHLKTVSELR-----GRADRIAKVTFRG--QSFYSRVLENCEDVADFDETFRWPVASSIDRNEVLEIQIFNYSK--   91 (144)
T ss_dssp             EEEEEEEEEEESCC-----SCEEEEEEEEETT--EEEECCCEEEECSCEEEEEEEEEEESSCCCTTCEEEEEEEEECT--
T ss_pred             EEEEEEEEEecCCC-----CCCCCeEEEEEec--cceeeEEeccCCCCceEcceEEecCCCCCCCCCEEEEEEEECcc--
Confidence            46999999999998     5899999999977  899999998545999999999999963   35799999999988  


Q ss_pred             CCCCCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEeeCCCCCcc-EEEEEEEEEeee
Q 040360           87 SSGNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRNAKGDKN-GIINVSVRSLKV  145 (198)
Q Consensus        87 ~~g~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~~~Gk~~-G~I~lsi~~f~~  145 (198)
                       +++    |++||++.|+|+++....    . -.++-.|.+.++++- +.|.|+++ +.+
T Consensus        92 -v~~----nrlIG~~~i~Lq~lv~~~----~-l~l~~~LvD~n~~~~~a~I~l~l~-Y~p  140 (144)
T 3l9b_A           92 -VFS----NKLIGTFRMVLQKVVEEN----R-VEVSDTLIDDNNAIIKTSLSMEVR-YQA  140 (144)
T ss_dssp             -TSC----CEEEEEEEEESHHHHHHS----E-EEEEEEEECTTSCEEEEEEEEEEE-EEE
T ss_pred             -ccC----CCEEEEEEEEhHHhccCC----e-EEEeecccCCCCCccccEEEEEEE-ecC
Confidence             663    999999999999998764    1 235778999888864 68888888 543

>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A

Probab=99.77  E-value=4.6e-18  Score=133.66  Aligned_cols=94  Identities=11%  Similarity=0.097  Sum_probs=81.5

Q ss_pred             cceEEEEEEEEeeCCCCCCCCCcCCcEEEEEECCC---CcEEEeeeecCCCCCCeeeeEEEEEecCC---CcEEEEEEEe
Q 040360            8 GYRTIELTVLSGEDLRIDRRLIKKNAFAIVQTDTS---FDYCTTKVDESGGSHPSWNEKLVIELPMH---ARFITVQVQC   81 (198)
Q Consensus         8 ~~~~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~---~~~~~T~v~~~~g~nP~WNE~f~f~v~~~---~~~L~~eV~~   81 (198)
                      ..+.|.|+|++|++|+..+..++.||||+|++.+.   ..+++|++++++ .||+|||+|.|.+...   ...|.|+|||
T Consensus        35 ~~~~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t-~nP~wne~f~f~v~~~~l~~~~L~i~V~d  113 (166)
T 2cm5_A           35 QQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKT-LNPEFNEEFFYDIKHSDLAKKSLDISVWD  113 (166)
T ss_dssp             TTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETC---CCEEECCCCCSC-SSCEEEEEEEEECCGGGGGGCEEEEEEEE
T ss_pred             CCCEEEEEEEEeECCCCccCCCCCCcEEEEEEECCCCccceEeCCcccCC-CCCcccceEEEEcchHhcCCCEEEEEEEE
Confidence            35789999999999988777889999999999863   268899999886 9999999999999752   4699999999


Q ss_pred             CCCCCCCCCCCCCCceeEEEEEeCcccc
Q 040360           82 KSKSSSSGNNNNHNKIVGFARIPVSDFI  109 (198)
Q Consensus        82 ~~~~~~~g~~~~~d~~IG~a~IpL~~l~  109 (198)
                      ++.   +++    +++||.+.|+|.++.
T Consensus       114 ~d~---~~~----~~~iG~~~i~l~~~~  134 (166)
T 2cm5_A          114 YDI---GKS----NDYIGGCQLGISAKG  134 (166)
T ss_dssp             CCS---SSC----CEEEEEEEEETTCCH
T ss_pred             CCC---CCC----CcEEEeEEEecccCC
Confidence            987   663    899999999999864

>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A*

Probab=99.77  E-value=4.7e-18  Score=132.58  Aligned_cols=109  Identities=15%  Similarity=0.177  Sum_probs=88.4

Q ss_pred             cceEEEEEEEEeeCCCCCCCCCcCCcEEEEEECCC---CcEEEeeeecCCCCCCeeeeEEEEEecCC---CcEEEEEEEe
Q 040360            8 GYRTIELTVLSGEDLRIDRRLIKKNAFAIVQTDTS---FDYCTTKVDESGGSHPSWNEKLVIELPMH---ARFITVQVQC   81 (198)
Q Consensus         8 ~~~~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~---~~~~~T~v~~~~g~nP~WNE~f~f~v~~~---~~~L~~eV~~   81 (198)
                      ..+.|.|+|++|++|+..+..+..||||+|++.++   ..+++|++++++ .||+|||+|.|.++..   ...|.|+|||
T Consensus        23 ~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t-~nP~wne~f~f~v~~~~l~~~~l~i~V~d  101 (159)
T 1tjx_A           23 TAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNT-LNPYYNESFSFEVPFEQIQKVQVVVTVLD  101 (159)
T ss_dssp             TTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSC-SSCEEEEEEEEECCGGGGGGCEEEEEEEE
T ss_pred             CCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCceeceeeCceecCC-CCCcccceEEEEcCHHHhCCcEEEEEEEE
Confidence            45799999999999998777889999999999752   146899999886 9999999999999753   4689999999


Q ss_pred             CCCCCCCCCCCCCCceeEEEEEeCccc----------cCCCCCCCceEeEEEEeeC
Q 040360           82 KSKSSSSGNNNNHNKIVGFARIPVSDF----------IGGYAPENYLHFLSYRLRN  127 (198)
Q Consensus        82 ~~~~~~~g~~~~~d~~IG~a~IpL~~l----------~~~~~~~~~~~~~sy~L~~  127 (198)
                      ++.   ++    +|++||.+.|+|.++          ...  + +.....||.|..
T Consensus       102 ~d~---~~----~~~~iG~~~i~l~~~~~~~~~w~~l~~~--~-~~~~~~W~~L~~  147 (159)
T 1tjx_A          102 YDK---IG----KNDAIGKVFVGYNSTGAELRHWSDMLAN--P-RRPIAQWHTLQV  147 (159)
T ss_dssp             CCS---SS----CCEEEEEEEEETTCCHHHHHHHHHHHHS--T-TCCEEEEEECBC
T ss_pred             CCC---CC----CCceEEEEEECCCCCCcHHHHHHHHHHC--C-CCeeeeEEECcC
Confidence            987   66    389999999999954          222  1 223567999875

>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.77  E-value=4.8e-18  Score=130.07  Aligned_cols=105  Identities=12%  Similarity=0.091  Sum_probs=85.5

Q ss_pred             cceEEEEEEEEeeCCCCCCCCCcCCcEEEEEECCC--CcEEEeeeecCCCCCCeeeeEEEEEecCC---CcEEEEEEEeC
Q 040360            8 GYRTIELTVLSGEDLRIDRRLIKKNAFAIVQTDTS--FDYCTTKVDESGGSHPSWNEKLVIELPMH---ARFITVQVQCK   82 (198)
Q Consensus         8 ~~~~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~--~~~~~T~v~~~~g~nP~WNE~f~f~v~~~---~~~L~~eV~~~   82 (198)
                      ..+.|.|+|++|++   .+..++.||||+|.+.++  ..+++|++++++ .||+|||+|.|.++..   ...|.|+|||+
T Consensus        24 ~~~~L~V~v~~a~~---~d~~g~sDPyv~v~l~~~~~~~~~kT~v~~~t-lnP~wnE~f~f~v~~~~l~~~~L~~~V~d~   99 (138)
T 1wfm_A           24 QKAELFVTRLEAVT---SNHDGGCDCYVQGSVANRTGSVEAQTALKKRQ-LHTTWEEGLVLPLAEEELPTATLTLTLRTC   99 (138)
T ss_dssp             TTTEEEEEEEEEEC---CCCSSCCCEEEEEEEEETTEEEEEECCCCCCC-SSEECSSCEEEECCTTSSTTCEEEEEEEEC
T ss_pred             CCCEEEEEEEEEEc---CCCCCCcceEEEEEEEcCCCcccEecccCcCC-CCCcCCceEEEEecHHHcCCCEEEEEEEEC
Confidence            35789999999994   355678999999999541  246899999986 9999999999999753   46899999999


Q ss_pred             CCCCCCCCCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEeeCC
Q 040360           83 SKSSSSGNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRNA  128 (198)
Q Consensus        83 ~~~~~~g~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~~  128 (198)
                      +.   ++    +|++||++.|+|.++..+.     ....||.|...
T Consensus       100 d~---~~----~dd~lG~~~i~l~~l~~~~-----~~~~W~~L~~~  133 (138)
T 1wfm_A          100 DR---FS----RHSVAGELRLGLDGTSVPL-----GAAQWGELKTS  133 (138)
T ss_dssp             CS---SC----TTSCSEEEEEESSSSSSCT-----TCCEEEECCCC
T ss_pred             CC---CC----CCcEEEEEEEEcccccCcc-----cccceeeCcCC
Confidence            87   66    3899999999999996432     13479999864

>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A

Probab=99.76  E-value=6.4e-18  Score=130.87  Aligned_cols=92  Identities=15%  Similarity=0.188  Sum_probs=74.2

Q ss_pred             cceEEEEEEEEeeCCCCCCCCCcCCcEEEEEECCC-C--cEEEeeeecCCCCCCeeeeEEEEEecCC---CcEEEEEEEe
Q 040360            8 GYRTIELTVLSGEDLRIDRRLIKKNAFAIVQTDTS-F--DYCTTKVDESGGSHPSWNEKLVIELPMH---ARFITVQVQC   81 (198)
Q Consensus         8 ~~~~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~-~--~~~~T~v~~~~g~nP~WNE~f~f~v~~~---~~~L~~eV~~   81 (198)
                      ..+.|.|+|++|++|+..+..++.||||+|.+.++ .  .+++|++++++ .||+|||+|.|.++..   ...|.|+|||
T Consensus        28 ~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t-~nP~wne~f~f~v~~~~l~~~~l~v~V~d  106 (153)
T 1w15_A           28 TTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCT-PNAVFNELFVFDIPCESLEEISVEFLVLD  106 (153)
T ss_dssp             TTTEEEEEEEEEESCC------CCCEEEEEEEEETTEEEEEEECCCCCSC-SSEEEEEEEEEECCSSSSTTEEEEEEEEE
T ss_pred             CCCEEEEEEEEeECCCCcCCCCCCCeEEEEEEEeCCeEeceEecCcccCC-CCCeecceEEEECCHHHhCceEEEEEEEe
Confidence            35789999999999988777788999999999542 1  26799999985 9999999999999764   3689999999


Q ss_pred             CCCCCCCCCCCCCCceeEEEEEeCcc
Q 040360           82 KSKSSSSGNNNNHNKIVGFARIPVSD  107 (198)
Q Consensus        82 ~~~~~~~g~~~~~d~~IG~a~IpL~~  107 (198)
                      ++.   +++    |++||++.|+|.+
T Consensus       107 ~d~---~~~----~~~lG~~~i~l~~  125 (153)
T 1w15_A          107 SER---GSR----NEVIGRLVLGATA  125 (153)
T ss_dssp             CCT---TSC----CEEEEEEEESTTC
T ss_pred             CCC---CCC----CcEEEEEEECCCC
Confidence            987   663    8999999999998

>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A

Probab=99.74  E-value=5.8e-17  Score=152.41  Aligned_cols=121  Identities=19%  Similarity=0.320  Sum_probs=101.3

Q ss_pred             cceEEEEEEEEeeCCCCCC--CCCcCCcEEEEEECCC---CcEEEeeeecCCCCCCeeeeEEEEEecCC-CcEEEEEEEe
Q 040360            8 GYRTIELTVLSGEDLRIDR--RLIKKNAFAIVQTDTS---FDYCTTKVDESGGSHPSWNEKLVIELPMH-ARFITVQVQC   81 (198)
Q Consensus         8 ~~~~LeVtVlsA~~L~~~~--~~~~~dpYvvv~~~~~---~~~~~T~v~~~~g~nP~WNE~f~f~v~~~-~~~L~~eV~~   81 (198)
                      ..+.|.|+|++|++|+..+  ..+..||||+|++.+.   ..+++|++++++|.||+|||+|.|.+... ...|.|+|+|
T Consensus       495 ~~~~L~V~Vi~A~~L~~~d~~~~~~~DPYV~V~l~g~~~d~~~~kTkvi~~ng~NP~WnE~f~F~v~~~el~~L~~~V~D  574 (624)
T 1djx_A          495 RPERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPDLALVRFMVED  574 (624)
T ss_dssp             CCEEEEEEEEEEESCCCCSSCSSSCCCEEEEEEEESSGGGCEEEECCCCTTCSSSCEEEEEEEEEESCGGGCEEEEEEEE
T ss_pred             cceEEEEEEEEcCCCCcccccccCCCCcEEEEEEecCCCCcceeecccccCCCCCCccCceEEEEEecCCCCEEEEEEEE
Confidence            4578999999999998655  3578999999999551   35789999999889999999999999764 3689999999


Q ss_pred             CCCCCCCCCCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEeeCCCCCc--cEEEEEEEEEee
Q 040360           82 KSKSSSSGNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRNAKGDK--NGIINVSVRSLK  144 (198)
Q Consensus        82 ~~~~~~~g~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~~~Gk~--~G~I~lsi~~f~  144 (198)
                      ++.   ++    +|++||++.|||.+|..|+        .+++|++..|++  .+.|.|.+. |.
T Consensus       575 ~D~---~~----~dd~iG~~~ipl~~L~~G~--------r~v~L~d~~g~~~~~~~L~v~i~-~~  623 (624)
T 1djx_A          575 YDS---SS----KNDFIGQSTIPWNSLKQGY--------RHVHLLSKNGDQHPSATLFVKIS-IQ  623 (624)
T ss_dssp             CCS---SS----CCEEEEEEEEEGGGBCCEE--------EEEEEECTTSCEEEEEEEEEEEE-EE
T ss_pred             cCC---CC----CCceeEEEEEEHHHcCCCc--------EEEeCCCCCcCCCCceEEEEEEE-EE
Confidence            987   65    3999999999999997653        589999998885  577888777 64

>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B

Probab=99.73  E-value=1.8e-17  Score=150.40  Aligned_cols=122  Identities=15%  Similarity=0.197  Sum_probs=100.2

Q ss_pred             cceEEEEEEEEeeCCCCCCCCCcCCcEEEEEECCCCcEEEeeeecCCCCCCeeeeEEEEEecCC-CcEEEEEEEeCCCCC
Q 040360            8 GYRTIELTVLSGEDLRIDRRLIKKNAFAIVQTDTSFDYCTTKVDESGGSHPSWNEKLVIELPMH-ARFITVQVQCKSKSS   86 (198)
Q Consensus         8 ~~~~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~~~~~~T~v~~~~g~nP~WNE~f~f~v~~~-~~~L~~eV~~~~~~~   86 (198)
                      ..+.|.|+|++|++|+..+..++.||||+|.+++  ++++|++++++ .||.|||+|.|.+... ...|.|+|||++.  
T Consensus       385 ~~~~l~v~v~~a~~L~~~d~~~~sdpyv~v~~~~--~~~~T~~~~~t-~nP~w~e~f~f~~~~~~~~~l~~~v~d~d~--  459 (510)
T 3jzy_A          385 GIGRLMVHVIEATELKACKPNGKSNPYCEISMGS--QSYTTRTIQDT-LNPKWNFNCQFFIKDLYQDVLCLTLFDRDQ--  459 (510)
T ss_dssp             -CEEEEEEEEEEESCCCCSTTSCCCEEEEEEETT--EEEECCCCSSC-SSCEEEEEEEEEESCTTTCEEEEEEEECCS--
T ss_pred             CCceEEEEeceeecCCCCCCCCCCCeEEEEEECC--eeccCCccCCC-CCCccCceEEEEecCCCCCEEEEEEEeCCC--
Confidence            4578999999999998888889999999999987  88999999987 9999999999999653 4689999999987  


Q ss_pred             CCCCCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEeeCCCCCccEEEEEEEEEee
Q 040360           87 SSGNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRNAKGDKNGIINVSVRSLK  144 (198)
Q Consensus        87 ~~g~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~~~Gk~~G~I~lsi~~f~  144 (198)
                       ++    +|++||.+.|+|.++..+..... ....|+.|.   ++..|+|+|.+. +.
T Consensus       460 -~~----~~d~lG~~~~~l~~l~~~~~~~~-~~~~~~~l~---~~~~G~i~l~~~-l~  507 (510)
T 3jzy_A          460 -FS----PDDFLGRTEIPVAKIRTEQESKG-PMTRRLLLH---EVPTGEVWVRFD-LQ  507 (510)
T ss_dssp             -SS----SCCEEEEEEEEHHHHHHHHHHHC-SCCEEEECB---SSSSCEEEEEEE-EE
T ss_pred             -CC----CCCceEEEEEEHHHhccccCCCC-ceeeeecCC---CCCCceEEEEEE-EE
Confidence             66    38999999999999986531111 123578875   457899888877 53

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A

Probab=99.73  E-value=5.4e-17  Score=138.58  Aligned_cols=125  Identities=14%  Similarity=0.151  Sum_probs=97.6

Q ss_pred             cceEEEEEEEEeeCCCCCCCCCcCCcEEEEEECCC-CcEEEeeeecCCCCCCeeeeEEEEEecCC---CcEEEEEEEeCC
Q 040360            8 GYRTIELTVLSGEDLRIDRRLIKKNAFAIVQTDTS-FDYCTTKVDESGGSHPSWNEKLVIELPMH---ARFITVQVQCKS   83 (198)
Q Consensus         8 ~~~~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~-~~~~~T~v~~~~g~nP~WNE~f~f~v~~~---~~~L~~eV~~~~   83 (198)
                      ..+.|.|+|++|++|+..+..++.||||+|.+.++ .++++|++++++ .||+|||+|.|.++..   ...|.|+|||++
T Consensus        18 ~~~~L~v~v~~a~~L~~~d~~g~~dPyv~v~l~~~~~~~~kT~v~~~t-~nP~wne~f~f~v~~~~l~~~~L~~~V~d~d   96 (296)
T 1dqv_A           18 GSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKT-LNPIFNETFQFSVPLAELAQRKLHFSVYDFD   96 (296)
T ss_dssp             SSCEEEEEEEEEECCCCCSTTSCCCEEEEEECTTSTTSCEECCCCCSC-SSCEEEEEEEEECCGGGGSSCCCEEEEEECC
T ss_pred             CCCEEEEEEEEeECCCCcCCCCCcCeEEEEEEEcCCCeeEeCCccCCC-CCCcEeeEEEEEecHHHhcCCEEEEEEEEcC
Confidence            35789999999999998777889999999999532 478899999886 9999999999998643   358999999998


Q ss_pred             CCCCCCCCCCCCceeEEEEEe-CccccCCCCCCCceEeEEEEeeCCCC--CccEEEEEEEEEeee
Q 040360           84 KSSSSGNNNNHNKIVGFARIP-VSDFIGGYAPENYLHFLSYRLRNAKG--DKNGIINVSVRSLKV  145 (198)
Q Consensus        84 ~~~~~g~~~~~d~~IG~a~Ip-L~~l~~~~~~~~~~~~~sy~L~~~~G--k~~G~I~lsi~~f~~  145 (198)
                      .   ++    +|++||++.|+ |.++......    ...|+.|....+  ...|.|++++. +.+
T Consensus        97 ~---~~----~~~~iG~~~i~~l~~~~~~~~~----~~~w~~L~~~~~~~~~~G~i~vsl~-y~~  149 (296)
T 1dqv_A           97 R---FS----RHDLIGQVVLDNLLELAEQPPD----RPLWRDILEGGSEKADLGELNFSLC-YLP  149 (296)
T ss_dssp             S---SS----CCCEEEEEECCCTTGGGSSCSS----CCCCEECBCCSSCCSCCCEEEEEEE-EET
T ss_pred             C---CC----CCceEEEEEeccccccccCCcc----ceeeeccccccccccccceEEEEEE-ecc
Confidence            7   66    38999999996 5555542211    235888876433  35788888877 543

>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus}

Probab=99.70  E-value=1.7e-16  Score=146.99  Aligned_cols=113  Identities=18%  Similarity=0.203  Sum_probs=94.9

Q ss_pred             ceEEEEEEEEeeCCCCCCCCCcCCcEEEEEECCCCcEEEeeeecCCCCCCeeeeEEEEEec--CCCcEEEEEEEeCCCCC
Q 040360            9 YRTIELTVLSGEDLRIDRRLIKKNAFAIVQTDTSFDYCTTKVDESGGSHPSWNEKLVIELP--MHARFITVQVQCKSKSS   86 (198)
Q Consensus         9 ~~~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~~~~~~T~v~~~~g~nP~WNE~f~f~v~--~~~~~L~~eV~~~~~~~   86 (198)
                      .+.|.|+|++|++|+. +.+++.||||+|++++  ++++|++++++ .||+|||+|.|.+.  .....|.|+|||++.  
T Consensus       393 ~~~L~V~V~~A~~L~~-D~~g~sDPYV~v~l~~--~~~kTkvik~t-lNP~Wne~f~f~~~~~~~~~~L~~~V~D~D~--  466 (540)
T 3nsj_A          393 LAHLVVSNFRAEHLWG-DYTTATDAYLKVFFGG--QEFRTGVVWNN-NNPRWTDKMDFENVLLSTGGPLRVQVWDADY--  466 (540)
T ss_dssp             EEEEEEEEEEEESCCC-SSCSCCCEEEEEEETT--EEEECCCBCSC-SSCBCCCCEEEEEEETTTCCCEEEEEEECCS--
T ss_pred             ccEEEEEEEEccCCCc-ccCCCcCeEEEEEECC--EeeeeeeecCC-CCCCCCeEEEEEEecCCCCCEEEEEEEECCC--
Confidence            4689999999999987 7889999999999998  78999999987 99999999999853  246789999999987  


Q ss_pred             CCCCCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEeeCCCCCccEEEEEEEEEeeeCCc
Q 040360           87 SSGNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRNAKGDKNGIINVSVRSLKVAAD  148 (198)
Q Consensus        87 ~~g~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~~~Gk~~G~I~lsi~~f~~~~~  148 (198)
                       .+    +|++||++.++|..   |.      +..|+.|      .+|.|++++. +...++
T Consensus       467 -~~----~dD~LG~~~~~L~~---g~------~~~~~~l------~~G~l~~~~~-~~c~p~  507 (540)
T 3nsj_A          467 -GW----DDDLLGSCDRSPHS---GF------HEVTCEL------NHGRVKFSYH-AKCLPH  507 (540)
T ss_dssp             -SS----CCEEEEEEEECCCS---EE------EEEEEEC------SSSEEEEEEE-EEECTT
T ss_pred             -CC----CCCEEEEEEEEeeC---Cc------EEEEEEc------CCeEEEEEEE-EEECCC
Confidence             55    38999999999972   21      3456664      2589999999 888765

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2

Probab=99.64  E-value=2.3e-15  Score=126.92  Aligned_cols=112  Identities=14%  Similarity=0.131  Sum_probs=88.1

Q ss_pred             ceEEEEEEEEeeCCCCCCCCCcCCcEEEEEECCC---CcEEEeeeecCCCCCCeeeeEEEEEecCC---CcEEEEEEEeC
Q 040360            9 YRTIELTVLSGEDLRIDRRLIKKNAFAIVQTDTS---FDYCTTKVDESGGSHPSWNEKLVIELPMH---ARFITVQVQCK   82 (198)
Q Consensus         9 ~~~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~---~~~~~T~v~~~~g~nP~WNE~f~f~v~~~---~~~L~~eV~~~   82 (198)
                      .+.|.|+|++|++|...+..+..||||+|++.++   ..+++|++.+++ .||+|||+|.|.++..   ...|.|+|||+
T Consensus       149 ~~~l~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~~kT~v~~~t-~nP~wne~f~f~v~~~~l~~~~l~i~V~d~  227 (284)
T 2r83_A          149 AGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNT-LNPYYNESFSFEVPFEQIQKVQVVVTVLDY  227 (284)
T ss_dssp             TTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSC-SSCEEEEEEEEECCTTTGGGEEEEEEEEEC
T ss_pred             CCceEEEEEEeECCCCcCCCCCcCeEEEEEEEeCCcEeeeeccceecCC-CCCEEceeEEEeCCHHHhCceEEEEEEEeC
Confidence            4689999999999987777889999999999642   146789998886 9999999999999764   35799999999


Q ss_pred             CCCCCCCCCCCCCceeEEEEEeCccccCCC-------CCCCceEeEEEEeeCC
Q 040360           83 SKSSSSGNNNNHNKIVGFARIPVSDFIGGY-------APENYLHFLSYRLRNA  128 (198)
Q Consensus        83 ~~~~~~g~~~~~d~~IG~a~IpL~~l~~~~-------~~~~~~~~~sy~L~~~  128 (198)
                      +.   +++    +++||++.|+|..+..+.       ...+.....||.|...
T Consensus       228 d~---~~~----~~~iG~~~i~l~~~~~~~~~w~~~~~~~~~~~~~W~~L~~~  273 (284)
T 2r83_A          228 DK---IGK----NDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQVE  273 (284)
T ss_dssp             CS---SSC----CCEEEEEEEETTCCHHHHHHHHHHHHSTTSCEEEEEECBCH
T ss_pred             CC---CCC----CcEEEEEEECCCCCCcHHHHHHHHHHCCCCchheeeecCCc
Confidence            87   663    899999999998643210       0112234679998753

>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A

Probab=99.60  E-value=4.7e-15  Score=141.76  Aligned_cols=106  Identities=14%  Similarity=0.164  Sum_probs=89.5

Q ss_pred             cceEEEEEEEEeeCCCC---CCCCCcCCcEEEEEECCC-CcEEEeeeecCCCCCCeeeeEEEEEecC-CCcEEEEEEEeC
Q 040360            8 GYRTIELTVLSGEDLRI---DRRLIKKNAFAIVQTDTS-FDYCTTKVDESGGSHPSWNEKLVIELPM-HARFITVQVQCK   82 (198)
Q Consensus         8 ~~~~LeVtVlsA~~L~~---~~~~~~~dpYvvv~~~~~-~~~~~T~v~~~~g~nP~WNE~f~f~v~~-~~~~L~~eV~~~   82 (198)
                      ..+.|+|+|++|++|+.   .+..++.||||+|++.+. ..+++|++++++ .||+|||+|.|.+.. ....|.|+|||+
T Consensus        16 ~~g~L~V~Vi~A~nL~~~~~~D~~g~sDPYV~V~l~~~~~~k~kTkvik~t-lNPvWNEtF~F~v~~~~~~~L~~~V~D~   94 (749)
T 1cjy_A           16 YSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNND-INPVWNETFEFILDPNQENVLEITLMDA   94 (749)
T ss_dssp             CCEEEEEEEEEEECCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTC-SSCEEEEEEEEEECTTSCCBCEEEEEEC
T ss_pred             CccEEEEEEEEEECCCCccccCCCCCcCeEEEEEEecCCCCeEecceEcCC-CCCeeeeEEEEEecCCCCCEEEEEEEEC
Confidence            35799999999999986   556678999999999953 367899999986 999999999999976 457899999999


Q ss_pred             CCCCCCCCCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEeeC
Q 040360           83 SKSSSSGNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRN  127 (198)
Q Consensus        83 ~~~~~~g~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~  127 (198)
                      +.   ++     |++||++.|+|.++..+..     ...||+|..
T Consensus        95 D~---~~-----ddfIG~v~I~L~~L~~g~~-----~~~w~~L~~  126 (749)
T 1cjy_A           95 NY---VM-----DETLGTATFTVSSMKVGEK-----KEVPFIFNQ  126 (749)
T ss_dssp             CS---SS-----CEEEEEECCBSTTSCTTCC-----CCEEEEETT
T ss_pred             CC---CC-----CceeEEEEEEHHHcCCCCc-----eEEEEecCC
Confidence            87   66     8899999999999976542     346888853

>3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus}

Probab=99.58  E-value=8.5e-17  Score=146.97  Aligned_cols=122  Identities=15%  Similarity=0.235  Sum_probs=19.4

Q ss_pred             cceEEEEEEEEeeCCCCCCCCCcCCcEEEEEECCCCcEEEeeeecCC--CCCCeeeeEEEEEecCCCcEEEEEEEeC-CC
Q 040360            8 GYRTIELTVLSGEDLRIDRRLIKKNAFAIVQTDTSFDYCTTKVDESG--GSHPSWNEKLVIELPMHARFITVQVQCK-SK   84 (198)
Q Consensus         8 ~~~~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~~~~~~T~v~~~~--g~nP~WNE~f~f~v~~~~~~L~~eV~~~-~~   84 (198)
                      ..+.|+|+|++|++|+..+     ||||++.+++ ....+|++.+++  |.||+|||+|.|.+......|.|+|||+ +.
T Consensus         9 ~~~~L~V~VieAk~L~~~d-----dpYv~v~l~~-~~~~kT~v~~kt~~glnP~WnE~F~f~~~~~~~~L~v~V~d~~d~   82 (483)
T 3bxj_A            9 VDNVLKLWIIEARELPPKK-----RYYCELCLDD-MLYARTTSKPRSASGDTVFWGEHFEFNNLPAVRALRLHLYRDSDK   82 (483)
T ss_dssp             EEECC---------------------------------------------------CCEECC------------------
T ss_pred             eccEEEEEEEEcCCcCCCC-----CCeEEEEECC-eEEeeeeEEeCCCCCCCCccccEEEEecCCCccEEEEEEEecCCc
Confidence            3478999999999997543     9999999988 446789988764  5899999999998644457899999994 31


Q ss_pred             -CCCCCCCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEeeCCCC------------------------CccEEEEEE
Q 040360           85 -SSSSGNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRNAKG------------------------DKNGIINVS  139 (198)
Q Consensus        85 -~~~~g~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~~~G------------------------k~~G~I~ls  139 (198)
                       ++ .+    +|++||.+.|||.++..+..     ...||+|..+++                        +..|.|+|.
T Consensus        83 ~~~-~~----~d~~lG~v~i~l~~l~~~~~-----~~~W~~L~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~G~lrL~  152 (483)
T 3bxj_A           83 KRK-KD----KAGYVGLVTVPVATLAGRHF-----TEQWYPVTLPTGSGGSGGMGSGGGGGSGGGSGGKGKGGCPAVRLK  152 (483)
T ss_dssp             -----------------------------C-----CEECC--------------------------------------CE
T ss_pred             ccc-CC----CCceEEEEEEEHHHhcCCCC-----CCeEEECCCCCCccccccccccccccccccccccCCCCCceEEEE
Confidence             01 23    38999999999999976531     357999965432                        246899999


Q ss_pred             EEEeeeC
Q 040360          140 VRSLKVA  146 (198)
Q Consensus       140 i~~f~~~  146 (198)
                      ++ |...
T Consensus       153 v~-~~~~  158 (483)
T 3bxj_A          153 AR-YQTM  158 (483)
T ss_dssp             EE-EEEC
T ss_pred             EE-eeee
Confidence            99 8765

>3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM barrel domain, hydrolase, calcium binding, phospholipid binding; 2.00A {Sepia officinalis} PDB: 3qr1_A

Probab=99.53  E-value=9.9e-14  Score=133.73  Aligned_cols=112  Identities=21%  Similarity=0.304  Sum_probs=90.4

Q ss_pred             ceEEEEEEEEeeCCCCCCCCCcCCcEEEEEECCC---C--cEEEeeeecCCCCCCeeeeE-EEEE-ecCC-CcEEEEEEE
Q 040360            9 YRTIELTVLSGEDLRIDRRLIKKNAFAIVQTDTS---F--DYCTTKVDESGGSHPSWNEK-LVIE-LPMH-ARFITVQVQ   80 (198)
Q Consensus         9 ~~~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~---~--~~~~T~v~~~~g~nP~WNE~-f~f~-v~~~-~~~L~~eV~   80 (198)
                      .++|.|+|++|++|..    .+.||||+|++.+.   .  ++++|++++++|.||+|||+ |.|. +... -..|.|+|+
T Consensus       649 ~~~L~V~Visaq~L~~----~~~DPYV~V~l~g~p~d~~~~k~kTkvv~~nglNPvWNE~~F~F~~v~~pela~Lrf~V~  724 (816)
T 3qr0_A          649 AGTIEIKIISAQFLSD----KQISSYVEVEMYGLPTDTVRKKFKTKIIENNGMDPYYDEKVFVFKKVVLPDLAVVRIIVS  724 (816)
T ss_dssp             CEEEEEEEEEEECCCS----SCCCEEEEEEEESSGGGCEEEEEECCCBCSCSSCCBCCCCCEEEEEESCGGGCEEEEEEE
T ss_pred             ceEEEEEEEEcccCCC----CCCCCeEEEEEeCCCcccccceeeeEEecCCCCCCeEcCceeEEccccCCCccEEEEEEE
Confidence            4789999999999974    26899999999752   1  56799999887899999998 9998 6543 369999999


Q ss_pred             eCCCCCCCCCCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEeeCCCCCcc--EEEEEEEEEee
Q 040360           81 CKSKSSSSGNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRNAKGDKN--GIINVSVRSLK  144 (198)
Q Consensus        81 ~~~~~~~~g~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~~~Gk~~--G~I~lsi~~f~  144 (198)
                      |+      +     +++||++.|||++|..|+        ...+|++..|++-  +.|-+.|. +.
T Consensus       725 D~------d-----ddfiG~~~ipL~~L~~Gy--------R~vpL~~~~g~~~~~atLfv~i~-~~  770 (816)
T 3qr0_A          725 EE------N-----GKFIGHRVMPLDGIKPGY--------RHVPLRNESNRPLGLASVFAHIV-AK  770 (816)
T ss_dssp             ET------T-----SCEEEEEEEESTTCCCEE--------EEEEEECTTSCEEEEEEEEEEEE-EE
T ss_pred             ec------C-----CCeeeEEEEEHHHcCCcc--------eEEEEeCCCCCCCCceEEEEEEE-EE
Confidence            85      2     679999999999998764        4789999999854  56666655 54

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A

Probab=99.53  E-value=5.7e-15  Score=126.03  Aligned_cols=94  Identities=15%  Similarity=0.218  Sum_probs=80.5

Q ss_pred             ceEEEEEEEEeeCCCCCCCCCcCCcEEEEEECCC---CcEEEeeeecCCCCCCeeeeEEEEEecCC---CcEEEEEEEeC
Q 040360            9 YRTIELTVLSGEDLRIDRRLIKKNAFAIVQTDTS---FDYCTTKVDESGGSHPSWNEKLVIELPMH---ARFITVQVQCK   82 (198)
Q Consensus         9 ~~~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~---~~~~~T~v~~~~g~nP~WNE~f~f~v~~~---~~~L~~eV~~~   82 (198)
                      .+.|.|+|++|++|+..+..+..||||++++..+   ..+++|++.+++ .||+|||+|.|.++..   ...|.|+|||+
T Consensus       151 ~~~l~v~v~~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~~~t-~nP~wne~f~f~v~~~~l~~~~L~i~V~d~  229 (296)
T 1dqv_A          151 AGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNT-LNPTYNEALVFDVAPESVENVGLSIAVVDY  229 (296)
T ss_dssp             TTEEEEEEEEEESCCCCSSSSCCCEEEEECCCTTCCTTSCEECCCCCSC-SSCEEEECCCCCCCSGGGGSCCCCCEEEEC
T ss_pred             cceeEEEEEEeecCCccCCCCCCCcEEEEEEEeCCcCccceecceecCC-CCCeECceEEEEcCHHHccCcEEEEEEEeC
Confidence            4789999999999987777788999999999742   257899999886 9999999999998764   35799999999


Q ss_pred             CCCCCCCCCCCCCceeEEEEEeCccccC
Q 040360           83 SKSSSSGNNNNHNKIVGFARIPVSDFIG  110 (198)
Q Consensus        83 ~~~~~~g~~~~~d~~IG~a~IpL~~l~~  110 (198)
                      +.   ++    +|++||.+.|+|.++..
T Consensus       230 d~---~~----~~~~iG~~~i~l~~~~~  250 (296)
T 1dqv_A          230 DC---IG----HNEVIGVCRVGPEAADP  250 (296)
T ss_dssp             CS---SS----CCEEEEECCCSSCTTCH
T ss_pred             CC---CC----CCceEEEEEECCccCCc
Confidence            87   66    39999999999997743

>3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens}

Probab=99.51  E-value=1.2e-13  Score=134.09  Aligned_cols=113  Identities=19%  Similarity=0.230  Sum_probs=91.1

Q ss_pred             ceEEEEEEEEeeCCCCCCCCCcCCcEEEEEECCC----CcEEEeeeecCCCCCCeeee-EEEEE-ecC-CCcEEEEEEEe
Q 040360            9 YRTIELTVLSGEDLRIDRRLIKKNAFAIVQTDTS----FDYCTTKVDESGGSHPSWNE-KLVIE-LPM-HARFITVQVQC   81 (198)
Q Consensus         9 ~~~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~----~~~~~T~v~~~~g~nP~WNE-~f~f~-v~~-~~~~L~~eV~~   81 (198)
                      ..+|.|+|++|++|..    .+.||||+|.+.+.    ..+++|++++++|.||+||| +|.|. +.. +...|.|+|+|
T Consensus       724 ~~~L~V~Visaq~L~~----~~~DPYV~V~l~g~p~D~~~k~kTkvi~~NglNPvWnEe~F~F~~V~~pela~Lrf~V~D  799 (885)
T 3ohm_B          724 ANALRVKVISGQFLSD----RKVGIYVEVDMFGLPVDTRRKYRTRTSQGNSFNPVWDEEPFDFPKVVLPTLASLRIAAFE  799 (885)
T ss_dssp             CEEEEEEEEEEESCCS----SCCCEEEEEEEESSTTTCBCCCCCCCCSSCSSSCBCCCCCEEEEEESCGGGCEEEEEEEE
T ss_pred             ceEEEEEEEEeccCcc----cCCCcEEEEEEeCCCcccccceeeEEeeCCCcCCeeccceeEEeeEEcCCcCEEEEEEEc
Confidence            4589999999999974    26899999999751    13579999988789999999 69998 643 34689999998


Q ss_pred             CCCCCCCCCCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEeeCCCCCc--cEEEEEEEEEeee
Q 040360           82 KSKSSSSGNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRNAKGDK--NGIINVSVRSLKV  145 (198)
Q Consensus        82 ~~~~~~~g~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~~~Gk~--~G~I~lsi~~f~~  145 (198)
                      ++           +++||++.|||..|..|+        ...+|++..|..  .+.|.+.|. +..
T Consensus       800 ~d-----------ddfiG~~~lpL~~L~~Gy--------R~vpL~~~~g~~l~~atLfv~i~-~~~  845 (885)
T 3ohm_B          800 EG-----------GKFVGHRILPVSAIRSGY--------HYVCLRNEANQPLCLPALLIYTE-ASD  845 (885)
T ss_dssp             TT-----------TEEEEEEEEETTTCCCEE--------EEEEEECTTSCEEEEEEEEEEEE-EEE
T ss_pred             CC-----------ccEEeeEEEEHHHcCCCc--------eEEEecCCCCCccCceEEEEEEE-EEe
Confidence            53           679999999999997664        467999998874  677777777 653

>2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B

Probab=99.50  E-value=2.6e-13  Score=130.68  Aligned_cols=112  Identities=22%  Similarity=0.307  Sum_probs=89.5

Q ss_pred             ceEEEEEEEEeeCCCCCCCCCcCCcEEEEEECC---C-CcEEEee-eecCCCCCCeeee-EEEE-EecCC-CcEEEEEEE
Q 040360            9 YRTIELTVLSGEDLRIDRRLIKKNAFAIVQTDT---S-FDYCTTK-VDESGGSHPSWNE-KLVI-ELPMH-ARFITVQVQ   80 (198)
Q Consensus         9 ~~~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~---~-~~~~~T~-v~~~~g~nP~WNE-~f~f-~v~~~-~~~L~~eV~   80 (198)
                      .++|.|+|++|++|+.    .+.||||+|.+.+   + .++++|+ +++++|.||+||| +|.| .+... -..|.|+|+
T Consensus       677 ~~~L~V~Visa~~L~~----~~~DPYV~V~l~g~p~d~~~k~kTk~vv~~n~~NPvWnEe~f~F~~v~~~el~~Lr~~V~  752 (799)
T 2zkm_X          677 ATTLSITVISGQFLSE----RSVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPELASLRVAVM  752 (799)
T ss_dssp             CEEEEEEEEEEESCCS----SCCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGGGCEEEEEEE
T ss_pred             eeeEEEEEEeccccCc----cCCCcEEEEEEEecCCCcccceeecccccCCCCCCeeecceEEEEEEccCCccEEEEEEE
Confidence            5789999999999974    3689999999953   1 2468999 8887779999999 6999 78543 358999999


Q ss_pred             eCCCCCCCCCCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEeeCCCCC--ccEEEEEEEEEee
Q 040360           81 CKSKSSSSGNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRNAKGD--KNGIINVSVRSLK  144 (198)
Q Consensus        81 ~~~~~~~~g~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~~~Gk--~~G~I~lsi~~f~  144 (198)
                      |++           +++||.+.|||.+|..|+        .+++|++..|.  ..+.|.+.+. +.
T Consensus       753 D~d-----------~d~iG~~~ipl~~L~~G~--------r~v~L~~~~g~~~~~~~Lfv~i~-~~  798 (799)
T 2zkm_X          753 EEG-----------NKFLGHRIIPINALNSGY--------HHLCLHSESNMPLTMPALFIFLE-MK  798 (799)
T ss_dssp             ETT-----------TEEEEEEEEEGGGBCCEE--------EEEEEECTTCCEEEEEEEEEEEE-EE
T ss_pred             EeC-----------CCccceEeeehhhcCCCc--------EEEeccCCCCCCCCceEEEEEEE-EE
Confidence            853           679999999999997653        57899998887  3466666666 53

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A

Probab=99.42  E-value=6.5e-13  Score=125.24  Aligned_cols=107  Identities=15%  Similarity=0.127  Sum_probs=90.1

Q ss_pred             cceEEEEEEEEeeCCCCCCCCCcCCcEEEEEECCC---CcEEEeeeecCCCCCCeeeeEEEEEecCC--CcEEEEEEEeC
Q 040360            8 GYRTIELTVLSGEDLRIDRRLIKKNAFAIVQTDTS---FDYCTTKVDESGGSHPSWNEKLVIELPMH--ARFITVQVQCK   82 (198)
Q Consensus         8 ~~~~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~---~~~~~T~v~~~~g~nP~WNE~f~f~v~~~--~~~L~~eV~~~   82 (198)
                      ..+.|.|+|++|++|...+..++.||||++++.++   ..+.+|++++++ .||.|||+|.|.+...  ...|.|+|||+
T Consensus       170 ~~~~L~V~v~~a~~L~~~d~~g~sDPyvkv~l~p~~~~~~k~kT~v~~~t-lnP~wne~f~f~~~~~~~~~~L~v~v~d~  248 (674)
T 3pfq_A          170 DREVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKSS-LNPEWNETFRFQLKESDKDRRLSVEIWDW  248 (674)
T ss_dssp             CSSEEEEEEEEEESCCCCSTTSSCCEEEEEEEESCSSCCSCEECCCCSSC-SSCEEEEEEEEECCSTTTTCEEEEEEEEC
T ss_pred             ccceeeeeeecccccCCCCcccccCcccccccccCccccccccccccccc-cCCCccceeeeecccCCccceeeeEEeec
Confidence            45789999999999998888899999999999432   367899999987 9999999999998642  45799999999


Q ss_pred             CCCCCCCCCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEeeCC
Q 040360           83 SKSSSSGNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRNA  128 (198)
Q Consensus        83 ~~~~~~g~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~~  128 (198)
                      +.   .+    +|++||++.|+|.++....      ...||.|...
T Consensus       249 d~---~~----~dd~iG~~~i~l~~l~~~~------~~~w~~Lls~  281 (674)
T 3pfq_A          249 DL---TS----RNDFMGSLSFGISELQKAG------VDGWFKLLSQ  281 (674)
T ss_dssp             CS---SS----CCEECCBCCCBTTHHHHCC------EEEEEECBCT
T ss_pred             cc---cc----ccccccccccchhhhccCC------cccceeeccc
Confidence            87   66    3999999999999998653      2468998764

>1yrk_A NPKC-delta, protein kinase C, delta type; C2 domain, protein binding; HET: PTR; 1.70A {Homo sapiens} PDB: 1bdy_A

Probab=99.16  E-value=5.6e-10  Score=84.71  Aligned_cols=120  Identities=14%  Similarity=0.083  Sum_probs=86.5

Q ss_pred             CCCCcceEEEEEEEEeeCCCCCCCCCcCCcEEEEEECCCCcE---EEe-eeecCCCCCCeeeeEEEEEecCCCcEEEEEE
Q 040360            4 KSSSGYRTIELTVLSGEDLRIDRRLIKKNAFAIVQTDTSFDY---CTT-KVDESGGSHPSWNEKLVIELPMHARFITVQV   79 (198)
Q Consensus         4 ~~~m~~~~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~~~~---~~T-~v~~~~g~nP~WNE~f~f~v~~~~~~L~~eV   79 (198)
                      +|+|+ ..|+|.+.+++.-.........||||.|.++.. ..   .+| ...+.+ .+|+|||.|.-.+.. .+.|.|.|
T Consensus         1 ~~~m~-~flRi~~~~~~~~~~~~~~~~lDPy~aV~vdE~-~~~e~g~t~~~K~kT-~~P~Wne~Fd~~V~~-Gr~l~i~V   76 (126)
T 1yrk_A            1 GSHMA-PFLRIAFNSYELGSLQAEDEANQPFCAVKMKEA-LSTERGKTLVQKKPT-MYPEWKSTFDAHIYE-GRVIQIVL   76 (126)
T ss_dssp             CCCCC-CEEEEEEEEEECSSCCCSSSSCCCEEEEEEEEE-EEETTEEEEECCSCC-BCCCTTCEEEEECCT-TCEEEEEE
T ss_pred             CCCcC-ccEEeeeccccccccCCccccCCceEEEEeeee-EEcccceeecccCCC-CCcCccceEEeeeeC-CEEEEEEE
Confidence            45655 789999988876433222235899999999872 21   244 344444 899999999999876 48999999


Q ss_pred             EeCCCCCCCCCCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEeeCCCCCccEEEEEEEEEe
Q 040360           80 QCKSKSSSSGNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRNAKGDKNGIINVSVRSL  143 (198)
Q Consensus        80 ~~~~~~~~~g~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~~~Gk~~G~I~lsi~~f  143 (198)
                      |+..           .++|..++|++.+|+..-..++.....|..|     ++.|+|++.+++|
T Consensus        77 fh~a-----------~~fvAn~tV~~edL~~~c~~~~g~~e~WvdL-----eP~Gkl~~~i~~~  124 (126)
T 1yrk_A           77 MRAA-----------EEPVSEVTVGVSVLAERCKKNNGKAEFWLDL-----QPQAKVLMSVQYF  124 (126)
T ss_dssp             EEET-----------TEEEEEEEEEHHHHHHHHHTTTTEEEEEEEC-----BSSCEEEEEEEEE
T ss_pred             EcCC-----------CCeeeEEEEEHHHHHhhhccCCCceEEEEec-----ccCcEEEEEEEEe
Confidence            9632           4799999999999995410011234678887     6799999999944

>2enj_A NPKC-theta, protein kinase C theta type; beta-sandwich, phosphotyrosine binding, TCR, T-cell, diacylglycerol, phorbol ester, structural genomics; NMR {Homo sapiens}

Probab=99.08  E-value=6.1e-10  Score=85.63  Aligned_cols=122  Identities=10%  Similarity=0.085  Sum_probs=89.1

Q ss_pred             CCCCCcceEEEEEEEEeeCCCCCC-CCCcCCcEEEEEECCC--CcEEEe-eeecCCCCCCeeeeEEEEEecCCCcEEEEE
Q 040360            3 EKSSSGYRTIELTVLSGEDLRIDR-RLIKKNAFAIVQTDTS--FDYCTT-KVDESGGSHPSWNEKLVIELPMHARFITVQ   78 (198)
Q Consensus         3 ~~~~m~~~~LeVtVlsA~~L~~~~-~~~~~dpYvvv~~~~~--~~~~~T-~v~~~~g~nP~WNE~f~f~v~~~~~~L~~e   78 (198)
                      ++|.-+...|+|.+.+++...... .....||||.|.++..  ....+| ...+.+ .+|+|||.|.-.|.. .+.|.|.
T Consensus         3 ~~~~~m~~flRi~l~~~~~~~~~~~~~~~lDPY~aV~VdE~~~te~gqtl~~KkkT-~~P~Wne~Fd~~V~~-Gr~l~i~   80 (138)
T 2enj_A            3 SGSSGMSPFLRIGLSNFDCGSCQSCQGEAVNPYCAVLVKEYVESENGQMYIQKKPT-MYPPWDSTFDAHINK-GRVMQII   80 (138)
T ss_dssp             CCCSSCCCCEEEEEEEEECCCCCCSCCCCCCCEEEEEEEEEEEETTEEEEEEEEEE-ECCCSSSEEEECCCS-SCEEEEE
T ss_pred             CcccccCcceEEEeeccccCCCCCcccccCCceEEEEeeeeeeccCceeecccCCC-CCccccceEeeeEEC-CeEEEEE
Confidence            466667799999999988765322 2235899999999872  012455 333444 799999999988876 4899999


Q ss_pred             EEeCCCCCCCCCCCCCCceeEEEEEeCccccCCC-CCCCceEeEEEEeeCCCCCccEEEEEEEEEee
Q 040360           79 VQCKSKSSSSGNNNNHNKIVGFARIPVSDFIGGY-APENYLHFLSYRLRNAKGDKNGIINVSVRSLK  144 (198)
Q Consensus        79 V~~~~~~~~~g~~~~~d~~IG~a~IpL~~l~~~~-~~~~~~~~~sy~L~~~~Gk~~G~I~lsi~~f~  144 (198)
                      ||+..           .++|..++|++.+|+..- ..++ ....|..|     ++.|+|++.++ +.
T Consensus        81 Vfh~a-----------~~fVAn~tV~~edL~~~ck~~~g-~~e~WvdL-----eP~Gkl~v~i~-~~  129 (138)
T 2enj_A           81 VKGKN-----------VDLISETTVELYSLAERCRKNNG-KTEIWLEL-----KPQGRMLMNAR-YF  129 (138)
T ss_dssp             EECSS-----------CSCCEEEEEESHHHHHHHHHTTT-CEEEEEEC-----BSSCEEEEEEE-EC
T ss_pred             EEcCC-----------CCeeeEEEEEHHHHHhhhccCCC-ceEEEEec-----ccCcEEEEEEE-EE
Confidence            99632           469999999999999541 0012 24679888     67999999999 54

>2yrb_A Protein fantom; beta sandwich, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.7.1.1

Probab=97.52  E-value=0.0009  Score=52.38  Aligned_cols=123  Identities=17%  Similarity=0.170  Sum_probs=89.1

Q ss_pred             ceEEEEEEEEeeCCCCC-CCCC--cCCcEEEEEECCCCcEEEeeeecCCCCCCeeeeEEEEEecCC--------CcEEEE
Q 040360            9 YRTIELTVLSGEDLRID-RRLI--KKNAFAIVQTDTSFDYCTTKVDESGGSHPSWNEKLVIELPMH--------ARFITV   77 (198)
Q Consensus         9 ~~~LeVtVlsA~~L~~~-~~~~--~~dpYvvv~~~~~~~~~~T~v~~~~g~nP~WNE~f~f~v~~~--------~~~L~~   77 (198)
                      -+.+||.|.++.-=+.- ...+  .+-.||++.+.. .+.+.|.+..  |.+|.+|-+.++.+..+        ...|.+
T Consensus        17 EnlfEihi~~~~~~~~~l~~~~d~~p~tF~t~dF~d-fEtq~Tpv~~--G~~p~y~fts~Y~V~~d~~fl~yL~~~~l~l   93 (156)
T 2yrb_A           17 ENLFEIHINKVTFSSEVLQASGDKEPVTFCTYAFYD-FELQTTPVVR--GLHPEYNFTSQYLVHVNDLFLQYIQKNTITL   93 (156)
T ss_dssp             CEEEEEEEEEECCCHHHHHHHCSSCCEEEEEECSTT-CCCEECCCEE--SSSCCCCEEEEEEECCSHHHHHHHHHCCEEE
T ss_pred             CcEEEEEEeEEEEcHHHHhhccccCCcEEEEEEEec-eEeeeccccc--CCCCCcceEEEEEEEeCHHHHHHHhcCCEEE
Confidence            36799999988732210 0012  234467777766 6888999987  58999999999988654        358999


Q ss_pred             EEEeCCCCCCCCCCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEeeCCCC--CccEEEEEEEEEeeeCC
Q 040360           78 QVQCKSKSSSSGNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRNAKG--DKNGIINVSVRSLKVAA  147 (198)
Q Consensus        78 eV~~~~~~~~~g~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~~~G--k~~G~I~lsi~~f~~~~  147 (198)
                      |+.....   ..     -+.||.++|+|.++++..  +.  ......|....|  ..-|.|++.|| ++.+-
T Consensus        94 ELhqa~g---~~-----~~tla~~~I~l~~lLe~~--~~--i~g~~~L~g~~g~~~~~G~LeywiR-L~~Pi  152 (156)
T 2yrb_A           94 EVHQAYS---TE-----YETIAACQLKFHEILEKS--GR--IFCTASLIGTKGDIPNFGTVEYWFR-LRVSG  152 (156)
T ss_dssp             EEEEECS---SC-----EEEEEEEEECCSHHHHCC--SC--EEEEEEECBSSSCCTTSEEEEEEEE-EEECC
T ss_pred             EEEEeeC---CC-----ceEEEEEEEEhHHhhCcC--Cc--eEEEEEEEcCCCCcceEEEEEEEEE-Eeccc
Confidence            9977543   23     678999999999999763  22  234557888888  56899999999 88653

>3l4c_A Dedicator of cytokinesis protein 1; DOCK180, DOCK1, phosphoinositide specificity, guanine exchan factor, RHO GTPase, cytoskeleton, cell migration; 2.37A {Homo sapiens}

Probab=96.26  E-value=0.14  Score=42.01  Aligned_cols=60  Identities=13%  Similarity=0.313  Sum_probs=42.6

Q ss_pred             cEEEeeeecCCCCCCeeeeEEEEEecCC---CcEEEEEEEeCCCCCCCCCCCCCCceeEEEEEeCcc
Q 040360           44 DYCTTKVDESGGSHPSWNEKLVIELPMH---ARFITVQVQCKSKSSSSGNNNNHNKIVGFARIPVSD  107 (198)
Q Consensus        44 ~~~~T~v~~~~g~nP~WNE~f~f~v~~~---~~~L~~eV~~~~~~~~~g~~~~~d~~IG~a~IpL~~  107 (198)
                      ..++|-|...+ .+|.|+|++.+.||.+   ...|.|++++...   ..+.+...+.+|.+-+||-+
T Consensus        77 se~~S~V~YHn-k~P~w~EtIKi~LP~~~~~~~HLlFtFrH~S~---~~k~dk~E~pfg~a~lPL~~  139 (220)
T 3l4c_A           77 SEYKSVIYYQV-KQPRWFETVKVAIPIEDVNRSHLRFTFRHRSS---QDSKDKSEKIFALAFVKLMR  139 (220)
T ss_dssp             SCEECCCCTTC-SSCCCCEEEEEEECTTSSTTEEEEEEEEECCC---CSSCCCCCCEEEEEEEESBC
T ss_pred             eeEEEEEEEcC-CCCCceEeEEEeeChhhcCCeEEEEEEEEecc---cccccccCCeeEEEEEEccc
Confidence            45677777765 8999999999999864   4689999987653   11100114578888888854

>3hhm_A Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha isoform; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_A 2rd0_A 4a55_A* 2enq_A

Probab=95.36  E-value=0.16  Score=50.51  Aligned_cols=95  Identities=13%  Similarity=0.181  Sum_probs=61.9

Q ss_pred             ceEEEEEEEEeeCCCCCCCCCcCCcEEEEEECCCC----cEEEeeeecCCCCCCeeeeEEEEEecC----CCcEEEEEEE
Q 040360            9 YRTIELTVLSGEDLRIDRRLIKKNAFAIVQTDTSF----DYCTTKVDESGGSHPSWNEKLVIELPM----HARFITVQVQ   80 (198)
Q Consensus         9 ~~~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~~----~~~~T~v~~~~g~nP~WNE~f~f~v~~----~~~~L~~eV~   80 (198)
                      .+.+.|+|+++.++.... ....+-||.+.+-...    ...+|+..  .+.+|.|||.+.|++.-    .+..|.|.||
T Consensus       354 ~~~f~v~i~~~~~~n~~~-~~~~~~~V~~~l~hG~~~L~~~~~T~~~--~~~~~~Wne~l~f~i~i~dLPr~arL~~tl~  430 (1091)
T 3hhm_A          354 NSALRIKILCATYVNVNI-RDIDKIYVRTGIYHGGEPLCDNVNTQRV--PCSNPRWNEWLNYDIYIPDLPRAARLCLSIC  430 (1091)
T ss_dssp             CSEEEEEEEEESCCCCCC-SSCCCCCEEEEEESSSCSSCCEECCCCC--CTTSCEEEEEEEEEEEGGGCCTTCEEEEEEC
T ss_pred             CCCEEEEEEEecCCCCCc-cccceEEEEEEEEECCEEccCceecccc--CCCCCCCCeeEEecCccccCChhcEEEEEEE
Confidence            367999999999996433 2346788888876421    22334322  34688999999998742    3579999999


Q ss_pred             eCCCCCCCCCCCCCCceeEEEEEeCcccc
Q 040360           81 CKSKSSSSGNNNNHNKIVGFARIPVSDFI  109 (198)
Q Consensus        81 ~~~~~~~~g~~~~~d~~IG~a~IpL~~l~  109 (198)
                      +...   ...++.....||++.++|=|.-
T Consensus       431 ~~~~---~~~~~~~~~~lg~~n~~lfd~~  456 (1091)
T 3hhm_A          431 SVKG---RKGAKEEHCPLAWGNINLFDYT  456 (1091)
T ss_dssp             CCCC---CC-------CCEEEEEESBCTT
T ss_pred             EecC---ccCcccccceeEEeeeeeEccC
Confidence            8653   1100112457999999998764

>2wxf_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit delta isoform; transferase, phosphoprotein, isoform-specific inhibitors; HET: 039; 1.90A {Mus musculus} PDB: 2wxg_A* 2wxh_A* 2wxi_A* 2wxj_A* 2wxk_A* 2wxl_A* 2wxm_A* 2wxn_A* 2wxo_A* 2wxp_A* 2wxq_A* 2wxr_A 2x38_A*

Probab=94.85  E-value=0.29  Score=48.00  Aligned_cols=95  Identities=8%  Similarity=0.212  Sum_probs=58.0

Q ss_pred             ceEEEEEEEEeeCCCCCCCCCcCCcEEEEEECCC----CcEEEeeeecCCCCCCeeeeEEEEEecC----CCcEEEEEEE
Q 040360            9 YRTIELTVLSGEDLRIDRRLIKKNAFAIVQTDTS----FDYCTTKVDESGGSHPSWNEKLVIELPM----HARFITVQVQ   80 (198)
Q Consensus         9 ~~~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~----~~~~~T~v~~~~g~nP~WNE~f~f~v~~----~~~~L~~eV~   80 (198)
                      ...|.|+|.++.++...   ...+-||.+.+-..    .....|+-..- ..+|.|||.+.|++.-    .+..|.|.||
T Consensus       216 ~~~f~i~i~~~~~~~~~---~~~~~~V~~~l~~g~~~l~~~~~T~~~~~-~~~~~Wne~l~f~i~i~dLPr~a~L~~ti~  291 (940)
T 2wxf_A          216 EQPFSIELIEGRKVNAD---ERMKLVVQAGLFHGNEMLCKTVSSSEVNV-CSEPVWKQRLEFDISVCDLPRMARLCFALY  291 (940)
T ss_dssp             CSEEEEEEEEEECCCC------CEEEEEEEEEETTEESSCCEECCCEES-CSSCEEEEEEEEEEEGGGCCTTCEEEEEEE
T ss_pred             CCceEEEEEEecccCCC---CCceEEEEEEEEECCEEccCceecccccC-CCCcccceEEEcccccccCCcccEEEEEEE
Confidence            46899999999999643   34678888777532    12233433222 3689999999998742    3578999999


Q ss_pred             eCCCCCCCC---C---CCCCCceeEEEEEeCccc
Q 040360           81 CKSKSSSSG---N---NNNHNKIVGFARIPVSDF  108 (198)
Q Consensus        81 ~~~~~~~~g---~---~~~~d~~IG~a~IpL~~l  108 (198)
                      +.... ..+   .   .+.....||++.++|=+.
T Consensus       292 ~~~~~-~~~~~~~~~~~~~~~~~lg~~~~~lFd~  324 (940)
T 2wxf_A          292 AVVEK-AKKARSTKKKSKKADCPIAWANLMLFDY  324 (940)
T ss_dssp             EEC-----------------CEEEEEEEEESBCT
T ss_pred             EecCC-ccCccccccccccccceEEEEeeeEECC
Confidence            85320 001   0   000134788888888654

>2y3a_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit beta isoform; transferase, phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus musculus}

Probab=89.68  E-value=0.37  Score=47.96  Aligned_cols=70  Identities=13%  Similarity=0.209  Sum_probs=46.6

Q ss_pred             ceEEEEEEEEeeCCCCCCCCCcCCcEEEEEECCCCc----EEEeeeecCCCCCCeeeeEEEEEecC----CCcEEEEEEE
Q 040360            9 YRTIELTVLSGEDLRIDRRLIKKNAFAIVQTDTSFD----YCTTKVDESGGSHPSWNEKLVIELPM----HARFITVQVQ   80 (198)
Q Consensus         9 ~~~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~~~----~~~T~v~~~~g~nP~WNE~f~f~v~~----~~~~L~~eV~   80 (198)
                      ...+.|+|+++.++...   ...+-||.+.+-...+    ...|+-.. ...+|.|||.+.|++.-    .+..|.|.||
T Consensus       352 ~~~f~i~i~~~~~~~~~---~~~~~~V~~~l~~g~~~L~~~~~T~~~~-~~~~~~Wnewl~f~i~~~dLPr~a~L~~ti~  427 (1092)
T 2y3a_A          352 NNPFQITLVKGNKLNTE---ETVKVHVRAGLFHGTELLCKTVVSSEIS-GKNDHIWNEQLEFDINICDLPRMARLCFAVY  427 (1092)
T ss_dssp             CSEEEEEECCCCCCCCC---SSCCCCCBCCEEETTEESSCCCBCCCCC-SSSCCCCCEEEEEEEESSSCCTTCEEEEECC
T ss_pred             CCCEEEEEEEeccCCCC---CCceEEEEEEEEECCEEccCceeccccc-CCCCCccceeEEeCCccccCChhcEEEEEEE
Confidence            36899999999999643   2457776655533111    22333222 24689999999998742    3578999999


Q ss_pred             eC
Q 040360           81 CK   82 (198)
Q Consensus        81 ~~   82 (198)
                      +.
T Consensus       428 ~~  429 (1092)
T 2y3a_A          428 AV  429 (1092)
T ss_dssp             CC
T ss_pred             Ee
Confidence            85

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	198
d1wfja_	136	C2 domain protein At1g63220 {Thale cress (Arabidop	99.94
d2ep6a1	126	Multiple C2 and transmembrane domain-containing pr	99.91
d2nq3a1	133	E3 ubiquitin-protein ligase Itchy {Human (Homo sap	99.9
d1gmia_	136	Domain from protein kinase C epsilon {Rat (Rattus	99.88
d1qasa2	131	PI-specific phospholipase C isozyme D1 (PLC-D1), C	99.88
d1rlwa_	126	Domain from cytosolic phospholipase A2 {Human (Hom	99.87
d2cjta1	128	Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId:	99.83
d1a25a_	132	C2 domain from protein kinase c (beta) {Rat (Rattu	99.81
d1dqva1	130	Synaptotagmin III {Rat (Rattus norvegicus) [TaxId:	99.8
d1rsya_	143	Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10	99.79
d1rh8a_	142	Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]}	99.76
d2bwqa1	125	Regulating synaptic membrane exocytosis protein, r	99.74
d1ugka_	138	Synaptotagmin IV {Human (Homo sapiens) [TaxId: 960	99.74
d1wfma_	138	Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9	99.72
d1w15a_	138	Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId:	99.71
d2cm5a1	137	C2b-domain of rabphilin {Rat (Rattus norvegicus) [	99.71
d1uowa_	157	Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10	99.7
d1bdya_	123	Domain from protein kinase C delta {Rat (Rattus no	99.69
d2zkmx2	122	Phospholipase C-beta-2 {Human (Homo sapiens) [TaxI	99.65
d1dqva2	145	Synaptotagmin III {Rat (Rattus norvegicus) [TaxId:	99.62
d2yrba1	142	Fantom {Human (Homo sapiens) [TaxId: 9606]}	96.78
d1e7ua2	174	Phoshoinositide 3-kinase (PI3K) {Pig (Sus scrofa)	96.78

>d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain protein At1g63220
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.94  E-value=3.4e-26  Score=173.49  Aligned_cols=130  Identities=20%  Similarity=0.271  Sum_probs=111.0

Q ss_pred             CCCCCcceEEEEEEEEeeCCCCCCCCCcCCcEEEEEECCCCcEEEeeeecCCCCCCeeeeEEEEEecCCCcEEEEEEEeC
Q 040360            3 EKSSSGYRTIELTVLSGEDLRIDRRLIKKNAFAIVQTDTSFDYCTTKVDESGGSHPSWNEKLVIELPMHARFITVQVQCK   82 (198)
Q Consensus         3 ~~~~m~~~~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~~~~~~T~v~~~~g~nP~WNE~f~f~v~~~~~~L~~eV~~~   82 (198)
                      +++.-..|+|+|+|++|++|+..+..+++||||++++++  +.++|+++++++.||.|||+|.|.+......|+|+|||+
T Consensus         3 ~~~~~p~G~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~~~--~~~~t~~~~~~~~nP~Wne~f~f~v~~~~~~L~v~V~d~   80 (136)
T d1wfja_           3 SGSSGPHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRT--QDQKSNVAEGMGTTPEWNETFIFTVSEGTTELKAKIFDK   80 (136)
T ss_dssp             CCCCCCEEEEEEEEEEEEECSSCCSSCSSCCCEEEESSS--CEEECCCCTTCCSSCEEEEEEEEEEESSCCEEEEEECCS
T ss_pred             CCCCCCcEEEEEEEEEeeCCCCCCCCCCCCccEEEEEee--eeEEEEEEecCCCcEEEeeEEEEEEcCccceEEEEEEEe
Confidence            566777899999999999999888889999999999998  788999988766999999999999987667899999999


Q ss_pred             CCCCCCCCCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEeeCCCCCccEEEEEEEEEeeeCC
Q 040360           83 SKSSSSGNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRNAKGDKNGIINVSVRSLKVAA  147 (198)
Q Consensus        83 ~~~~~~g~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~~~Gk~~G~I~lsi~~f~~~~  147 (198)
                      +.   ++    +|++||.+.|||.++....    .....+|.|.. .++.+|+|+|+++ |.+..
T Consensus        81 d~---~~----~d~~iG~~~i~L~~l~~~~----~~~~~~~~l~~-~~~~~G~i~l~l~-~~p~~  132 (136)
T d1wfja_          81 DV---GT----EDDAVGEATIPLEPVFVEG----SIPPTAYNVVK-DEEYKGEIWVALS-FKPSG  132 (136)
T ss_dssp             SS---CT----TTCCSEEEEEESHHHHHHS----EEEEEEEEEEE-TTEEEEEEEEEEE-EEECC
T ss_pred             cC---CC----CCCEEEEEEEEhHHhcccC----CcCcEEEEecC-CCccCEEEEEEEE-EEeCC
Confidence            87   66    3899999999999986542    23456888864 5678999999999 97543

>d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=2.5e-24  Score=161.27  Aligned_cols=119  Identities=19%  Similarity=0.269  Sum_probs=101.1

Q ss_pred             cceEEEEEEEEeeCCCCCCCCCcCCcEEEEEECCCCcEEEeeeecCCCCCCeeeeEEEEEecCCCcEEEEEEEeCCCCCC
Q 040360            8 GYRTIELTVLSGEDLRIDRRLIKKNAFAIVQTDTSFDYCTTKVDESGGSHPSWNEKLVIELPMHARFITVQVQCKSKSSS   87 (198)
Q Consensus         8 ~~~~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~~~~~~T~v~~~~g~nP~WNE~f~f~v~~~~~~L~~eV~~~~~~~~   87 (198)
                      ..|.|.|+|++|++|+..+..+++||||++++++  ++++|++++++ .||.|||+|.|.++.....|.|+|||++.   
T Consensus         4 ~~G~L~V~v~~A~~L~~~d~~g~~Dpyv~v~~~~--~~~~T~~~~~t-~nP~wne~f~f~v~~~~~~L~i~V~d~~~---   77 (126)
T d2ep6a1           4 DVGILQVKVLKAADLLAADFSGKSDPFCLLELGN--DRLQTHTVYKN-LNPEWNKVFTFPIKDIHDVLEVTVFDEDG---   77 (126)
T ss_dssp             CSEEEEEEEEEEESCCCSSSSSCCCEEEEEEETT--EEEECCCCSSC-SSCCCCEEEEEEESCTTCEEEEEEEEEET---
T ss_pred             ccEEEEEEEEEeECCCCCCCCCCcCeEEEEEcCC--eEEEEEeeCCc-eeEEEEEEEEEEEeccCceeEEEEEEccC---
Confidence            3489999999999998878888999999999998  88999999876 99999999999998767899999999877   


Q ss_pred             CCCCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEeeCC--CCCccEEEEEEEEEee
Q 040360           88 SGNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRNA--KGDKNGIINVSVRSLK  144 (198)
Q Consensus        88 ~g~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~~--~Gk~~G~I~lsi~~f~  144 (198)
                      ++    +|++||++.|+|.++..+.       ..||.|...  .++.+|.|+|++. +.
T Consensus        78 ~~----~d~~lG~~~i~l~~l~~~~-------~~~~~l~~~~~~~~~~G~i~l~~~-~i  124 (126)
T d2ep6a1          78 DK----PPDFLGKVAIPLLSIRDGQ-------PNCYVLKNKDLEQAFKGVIYLEMD-LI  124 (126)
T ss_dssp             TE----EEEECCBCEEEGGGCCSSC-------CEECCCBCSCTTSCCSSEEEEEEE-EE
T ss_pred             Cc----CcceEEEEEEEHHHCCCCC-------ceEEEccccCCCCceeEEEEEEEE-EE
Confidence            66    3899999999999996542       146666543  4567899999998 64

>d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: E3 ubiquitin-protein ligase Itchy
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=3.8e-23  Score=156.86  Aligned_cols=123  Identities=12%  Similarity=0.181  Sum_probs=97.8

Q ss_pred             cceEEEEEEEEeeCCCCCCCCCcCCcEEEEEECCCCcEEEeeeecCCCCCCeeeeEEEEEecCCCcEEEEEEEeCCCCCC
Q 040360            8 GYRTIELTVLSGEDLRIDRRLIKKNAFAIVQTDTSFDYCTTKVDESGGSHPSWNEKLVIELPMHARFITVQVQCKSKSSS   87 (198)
Q Consensus         8 ~~~~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~~~~~~T~v~~~~g~nP~WNE~f~f~v~~~~~~L~~eV~~~~~~~~   87 (198)
                      |.+.|+|+|++|++|+..+..+++||||+|++++  +.++|++.+++ .||.|||.|.|.+... ..|+|+|||++.   
T Consensus         4 ~~~~L~v~v~~A~~~~~~~~~~~~dpyv~v~~~~--~~~kT~v~~~t-~nP~wne~f~f~~~~~-~~l~~~V~d~d~---   76 (133)
T d2nq3a1           4 MKSQLQITVISAKLKENKKNWFGPSPYVEVTVDG--QSKKTEKCNNT-NSPKWKQPLTVIVTPV-SKLHFRVWSHQT---   76 (133)
T ss_dssp             CCEEEEEEEEEEEECCCC--CCCCCEEEEEEETT--EEEECCCCSSC-SSCEEEEEEEEEECTT-CEEEEEEEECCS---
T ss_pred             cceEEEEEEEEeECCCcCCCCCCcCeEEEEEECC--eEEeeEEEEec-ccEEEcceEEEEEEec-ceeEEEEEEccC---
Confidence            4488999999999998878888999999999998  78999998876 9999999999999764 689999999988   


Q ss_pred             CCCCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEeeCCCC--CccEEEEEEEE
Q 040360           88 SGNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRNAKG--DKNGIINVSVR  141 (198)
Q Consensus        88 ~g~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~~~G--k~~G~I~lsi~  141 (198)
                      +++    |++||++.|+|.++............+++.|....+  +..|+|+|.+.
T Consensus        77 ~~~----d~~iG~~~i~L~~l~~~~~~~~~~~~~~l~l~~~~~~~~~~G~L~v~l~  128 (133)
T d2nq3a1          77 LKS----DVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGDKEPTETIGDLSICLD  128 (133)
T ss_dssp             SSC----CEEEEEEEEEHHHHHHHTTTEESSEEEEEEEEESSCTTSEEEEEEEEEE
T ss_pred             CCC----CceEEEEEEEHHHhhhhcCCceeeEEEEEecCCCCCCceEEEEEEEEEe
Confidence            663    899999999999987543111122345666665443  46788888776

>d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C epsilon
species: Rat (Rattus rattus) [TaxId: 10117]

Probab=99.88  E-value=2.8e-22  Score=152.41  Aligned_cols=120  Identities=13%  Similarity=0.183  Sum_probs=98.3

Q ss_pred             CcceEEEEEEEEeeCCCCCC-----------CCCcCCcEEEEEECCCCcEEEeeeecCCCCCCeeeeEEEEEecCCCcEE
Q 040360            7 SGYRTIELTVLSGEDLRIDR-----------RLIKKNAFAIVQTDTSFDYCTTKVDESGGSHPSWNEKLVIELPMHARFI   75 (198)
Q Consensus         7 m~~~~LeVtVlsA~~L~~~~-----------~~~~~dpYvvv~~~~~~~~~~T~v~~~~g~nP~WNE~f~f~v~~~~~~L   75 (198)
                      |-+|.|+|+|++|++|+..+           ..+.+||||+|+++. ....+|++.+++ .||.|||+|.|+++. .+.|
T Consensus         3 ~~~G~L~v~I~~A~~L~~~~~~~~~~~~~~~~~~~~DPYv~v~l~~-~~~~~T~~~~~t-~~P~Wne~f~f~v~~-~~~l   79 (136)
T d1gmia_           3 VFNGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDD-SRIGQTATKQKT-NSPAWHDEFVTDVCN-GRKI   79 (136)
T ss_dssp             CEEEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEETT-EEEEECCCCSSC-SSCEEEEEEEEEEEE-ECEE
T ss_pred             cEEEEEEEEEEEeECCCcccccccccccccCCCCCcCcEEEEEeCC-CcCcEeeEEcCC-CCccCccEEEEEEec-CCce
Confidence            45699999999999998532           346789999999988 345688887776 899999999999975 4789


Q ss_pred             EEEEEeCCCCCCCCCCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEeeCCCCCccEEEEEEEEEeee
Q 040360           76 TVQVQCKSKSSSSGNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRNAKGDKNGIINVSVRSLKV  145 (198)
Q Consensus        76 ~~eV~~~~~~~~~g~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~~~Gk~~G~I~lsi~~f~~  145 (198)
                      .|+|||++.   ++    +|++||++.|+|+++....   ......||+|.     ++|+|++.+. |++
T Consensus        80 ~i~V~d~~~---~~----~d~~iG~~~i~l~~l~~~~---~~~~~~w~~L~-----p~G~v~l~v~-~~~  133 (136)
T d1gmia_          80 ELAVFHDAP---IG----YDDFVANCTIQFEELLQNG---SRHFEDWIDLE-----PEGKVYVIID-LSG  133 (136)
T ss_dssp             EEEEEECCS---SS----SCEEEEEEEEEHHHHTSTT---CSEEEEEEECB-----SSCEEEEEEE-EEE
T ss_pred             EEEEEEecC---CC----CceeEEEEEEEHHHhhhcC---CcceeEEEeCC-----CCcEEEEEEE-EEe
Confidence            999999987   66    3899999999999998653   12356799984     5799999999 874

>d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.88  E-value=1.7e-21  Score=146.94  Aligned_cols=118  Identities=19%  Similarity=0.337  Sum_probs=92.3

Q ss_pred             ceEEEEEEEEeeCCCC--CCCCCcCCcEEEEEECC---CCcEEEeeeecCCCCCCeeeeEEEEEecC-CCcEEEEEEEeC
Q 040360            9 YRTIELTVLSGEDLRI--DRRLIKKNAFAIVQTDT---SFDYCTTKVDESGGSHPSWNEKLVIELPM-HARFITVQVQCK   82 (198)
Q Consensus         9 ~~~LeVtVlsA~~L~~--~~~~~~~dpYvvv~~~~---~~~~~~T~v~~~~g~nP~WNE~f~f~v~~-~~~~L~~eV~~~   82 (198)
                      ++.|.|+|++|++|+.  .+..++.||||+|++.+   +.++++|+++++++.||.|||+|.|.+.. ....|.|+|+|+
T Consensus         3 p~~l~V~Vi~a~~L~~~~~~~~~~~DPyV~v~l~g~~~~~~~~~T~~v~~~~~nP~wne~f~f~~~~~~~~~L~~~V~D~   82 (131)
T d1qasa2           3 PERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPDLALVRFMVEDY   82 (131)
T ss_dssp             CEEEEEEEEEEESCCCCC-----CCCEEEEEEEESSTTTCEEEECCCCSSCSSSCEEEEEEEEEESCGGGCEEEEEEEEC
T ss_pred             cEEEEEEEEEeeCCCCCCCCCCCCcCeEEEEEEccCCCCcEEEEEEEEecccCCceEEEEEEEEEEcchhceEEEEEEEe
Confidence            3689999999999963  34567899999999953   14678999888776899999999998865 346899999999


Q ss_pred             CCCCCCCCCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEeeCCCCCc--cEEEEEEEE
Q 040360           83 SKSSSSGNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRNAKGDK--NGIINVSVR  141 (198)
Q Consensus        83 ~~~~~~g~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~~~Gk~--~G~I~lsi~  141 (198)
                      +.   .+    +|++||++.|||.++..|.        .+++|+++.|+.  .+.|.+.|.
T Consensus        83 d~---~~----~d~~iG~~~i~l~~l~~g~--------~~~~L~~~~g~~~~~~~L~v~i~  128 (131)
T d1qasa2          83 DS---SS----KNDFIGQSTIPWNSLKQGY--------RHVHLLSKNGDQHPSATLFVKIS  128 (131)
T ss_dssp             CT---TT----CCEEEEEEEEEGGGBCCEE--------EEEEEECTTSCEEEEEEEEEEEE
T ss_pred             cC---CC----CCcEEEEEEEEEeccCCCC--------EEEECCCCCcCCCCCCEEEEEEE
Confidence            87   66    3899999999999996542        489999988874  456555555

>d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from cytosolic phospholipase A2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=1.1e-21  Score=146.15  Aligned_cols=118  Identities=14%  Similarity=0.178  Sum_probs=96.6

Q ss_pred             ceEEEEEEEEeeCCCCC---CCCCcCCcEEEEEECCC-CcEEEeeeecCCCCCCeeeeEEEEEecCC-CcEEEEEEEeCC
Q 040360            9 YRTIELTVLSGEDLRID---RRLIKKNAFAIVQTDTS-FDYCTTKVDESGGSHPSWNEKLVIELPMH-ARFITVQVQCKS   83 (198)
Q Consensus         9 ~~~LeVtVlsA~~L~~~---~~~~~~dpYvvv~~~~~-~~~~~T~v~~~~g~nP~WNE~f~f~v~~~-~~~L~~eV~~~~   83 (198)
                      +..|+|+|++|++|+..   +..+++||||++++++. .++++|++.+++ .||.|||+|.|.+... ...|.|+|||++
T Consensus         2 s~~l~V~v~~a~~L~~~~~~d~~~~~Dpyv~v~l~~~~~~~~~T~~~~~t-~nP~wne~f~f~i~~~~~~~L~v~V~d~d   80 (126)
T d1rlwa_           2 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNND-INPVWNETFEFILDPNQENVLEITLMDAN   80 (126)
T ss_dssp             CEEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTC-SSCEEEEEEEEEECTTSCCEEEEEEEECC
T ss_pred             CcEEEEEEEEccCCCCccccccCCCCCcEEEEEECCcccceeEeeecCCC-ccceeceeeeecccCcccCcEEEEEEECC
Confidence            57899999999999753   23478999999999763 367899998886 9999999999999754 468999999987


Q ss_pred             CCCCCCCCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEeeCCCCCccEEEEEEEEEee
Q 040360           84 KSSSSGNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRNAKGDKNGIINVSVRSLK  144 (198)
Q Consensus        84 ~~~~~g~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~~~Gk~~G~I~lsi~~f~  144 (198)
                      .   .+     |++||++.|+|++|..+.     ....||+|..   ..+|.|++++. +-
T Consensus        81 ~---~~-----d~~lG~~~i~L~~l~~~~-----~~~~~~~L~~---~~~g~i~~~l~-~~  124 (126)
T d1rlwa_          81 Y---VM-----DETLGTATFTVSSMKVGE-----KKEVPFIFNQ---VTEMVLEMSLE-VA  124 (126)
T ss_dssp             S---SC-----CEEEEEEEEEGGGSCTTC-----EEEEEEEETT---TEEEEEEEEEE-CC
T ss_pred             C---CC-----CCeEEEEEEEHHHccCCC-----eEEEEEEccC---CCeEEEEEEEE-EE
Confidence            6   55     899999999999996543     3567999953   45799999888 53

>d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Unc-13 homolog A
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.83  E-value=4.5e-20  Score=139.53  Aligned_cols=101  Identities=19%  Similarity=0.150  Sum_probs=84.1

Q ss_pred             eEEEEEEEEeeCCCCCCCCCcCCcEEEEEECCCCcEEEeeeecCCCCCCeeeeEEEEEecCCCcEEEEEEEeCCCCCCCC
Q 040360           10 RTIELTVLSGEDLRIDRRLIKKNAFAIVQTDTSFDYCTTKVDESGGSHPSWNEKLVIELPMHARFITVQVQCKSKSSSSG   89 (198)
Q Consensus        10 ~~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~~~~~~T~v~~~~g~nP~WNE~f~f~v~~~~~~L~~eV~~~~~~~~~g   89 (198)
                      ..|.|+|+.|++|...+   +.||||+++++.  .+.+|++.++  .||.|||+|.|.+......|.|+|||++.   .+
T Consensus         2 ~~L~V~v~~a~~l~~~~---~~dpYv~l~~~~--~k~~T~~~k~--~nP~Wne~f~f~v~~~~~~L~v~V~d~~~---~~   71 (128)
T d2cjta1           2 SLLCVGVKKAKFDGAQE---KFNTYVTLKVQN--VKSTTIAVRG--SQPSWEQDFMFEINRLDLGLTVEVWNKGL---IW   71 (128)
T ss_dssp             EEEEEEEEEEECSSCGG---GCEEEEEEEETT--EEEECCCEES--SSCEEEEEEEEEECCCSSEEEEEEEECCS---SC
T ss_pred             eEEEEEEEEEECCCCCC---CcCeEEEEEeCC--EEEEEEEecC--CCCeEEEEEEEeeccccceEEEEEEeCCC---cC
Confidence            57999999999998644   689999999988  7889998863  69999999999998777899999999876   66


Q ss_pred             CCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEeeCC
Q 040360           90 NNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRNA  128 (198)
Q Consensus        90 ~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~~  128 (198)
                           |++||++.|||+++......   ....||.|..+
T Consensus        72 -----d~~lG~~~I~L~~l~~~~~~---~~~~W~~L~~~  102 (128)
T d2cjta1          72 -----DTMVGTVWIPLRTIRQSNEE---GPGEWLTLDSQ  102 (128)
T ss_dssp             -----EEEEEEEEEEGGGSCBCSSC---CCCEEEECBC-
T ss_pred             -----CcceEEEEEEehhhccCCCC---CCCeeEECCcc
Confidence                 89999999999999755311   12369999654

>d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain from protein kinase c (beta)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.81  E-value=1.7e-19  Score=135.54  Aligned_cols=106  Identities=14%  Similarity=0.122  Sum_probs=88.2

Q ss_pred             cceEEEEEEEEeeCCCCCCCCCcCCcEEEEEECCC---CcEEEeeeecCCCCCCeeeeEEEEEecCC--CcEEEEEEEeC
Q 040360            8 GYRTIELTVLSGEDLRIDRRLIKKNAFAIVQTDTS---FDYCTTKVDESGGSHPSWNEKLVIELPMH--ARFITVQVQCK   82 (198)
Q Consensus         8 ~~~~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~---~~~~~T~v~~~~g~nP~WNE~f~f~v~~~--~~~L~~eV~~~   82 (198)
                      ..+.|.|+|++|+||+..+..+..||||+|++.+.   ..+++|++++++ .||+|||.|.|.+...  ...|.|+|||+
T Consensus        13 ~~~~L~V~V~~a~~L~~~d~~g~~DpYv~v~l~~~~~~~~~~kT~v~~~t-~nP~wne~f~f~v~~~~~~~~L~i~V~d~   91 (132)
T d1a25a_          13 DREVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCS-LNPEWNETFRFQLKESDKDRRLSVEIWDW   91 (132)
T ss_dssp             SSSEEEEEEEEEESCCCCSTTSCCCEEEEEEEESCTTCSSCEECCCCSSC-SSCEEEEEEEEECCSGGGGCEEEEEEEEC
T ss_pred             cCCEEEEEEEeeeCCCCCCCCCCcCeEEEEEEccCCCCccccEEeeecCC-CCCccceEEEEEeEccccCCEEeEEEEec
Confidence            45789999999999988777888999999999432   367899998876 9999999999998653  35799999999


Q ss_pred             CCCCCCCCCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEeeC
Q 040360           83 SKSSSSGNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRN  127 (198)
Q Consensus        83 ~~~~~~g~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~  127 (198)
                      +.   +++    |++||.+.|+|.++..+.      ...||+|..
T Consensus        92 d~---~~~----d~~iG~~~i~l~~l~~~~------~~~W~~L~~  123 (132)
T d1a25a_          92 DL---TSR----NDFMGSLSFGISELQKAG------VDGWFKLLS  123 (132)
T ss_dssp             CS---SSC----CEEEEEEEEEHHHHTTCC------EEEEEECBC
T ss_pred             CC---CCC----CcEeEEEEEeHHHcCCCC------CCeEEECCC
Confidence            87   663    899999999999986432      246999976

>d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.80  E-value=1.8e-19  Score=135.37  Aligned_cols=111  Identities=14%  Similarity=0.143  Sum_probs=88.4

Q ss_pred             CCcceEEEEEEEEeeCCCCCCCCCcCCcEEEEEECCC-CcEEEeeeecCCCCCCeeeeEEEEEecCC---CcEEEEEEEe
Q 040360            6 SSGYRTIELTVLSGEDLRIDRRLIKKNAFAIVQTDTS-FDYCTTKVDESGGSHPSWNEKLVIELPMH---ARFITVQVQC   81 (198)
Q Consensus         6 ~m~~~~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~-~~~~~T~v~~~~g~nP~WNE~f~f~v~~~---~~~L~~eV~~   81 (198)
                      ....+.|.|+|++|++|+..+..+..||||++++.++ .++++|++++++ .||.|||+|.|.++..   ...|.|+|||
T Consensus        14 ~~~~~~L~V~V~~a~~L~~~~~~g~~dpyv~v~l~~~~~~~~kT~v~~~t-~~P~wne~f~f~v~~~~~~~~~L~v~V~d   92 (130)
T d1dqva1          14 LYGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKT-LNPIFNETFQFSVPLAELAQRKLHFSVYD   92 (130)
T ss_dssp             CSSSCEEEEEEEEEECCCCCSTTSCCCEEEEEECTTSTTSCEECCCCCSC-SSCEEEEEEEEECCGGGGSSCCCEEEEEE
T ss_pred             ECCCCEEEEEEEeeeCCccccCCCCcceEEEEEEccCCCceEeceeEcCC-CCeeeeeEEEEEEchHHcCCCeEEEEEEE
Confidence            3456899999999999987777889999999999653 467899999876 8999999999998653   4679999999


Q ss_pred             CCCCCCCCCCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEeeC
Q 040360           82 KSKSSSSGNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRN  127 (198)
Q Consensus        82 ~~~~~~~g~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~  127 (198)
                      ++.   +++    |++||++.|++...+.....+   ...||+|.+
T Consensus        93 ~~~---~~~----d~~iG~~~i~~~~~l~~~~~~---~~~W~~L~~  128 (130)
T d1dqva1          93 FDR---FSR----HDLIGQVVLDNLLELAEQPPD---RPLWRDILE  128 (130)
T ss_dssp             CCS---SSC----CCEEEEEECCCTTGGGSSCSS---CCCCEECBC
T ss_pred             cCC---CCC----CceEEEEEECchhhhhcCCCC---CcEEEeccc
Confidence            987   663    899999999976544332122   236999874

>d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.79  E-value=7.8e-19  Score=133.66  Aligned_cols=107  Identities=14%  Similarity=0.154  Sum_probs=88.2

Q ss_pred             cceEEEEEEEEeeCCCCCCCCCcCCcEEEEEECCC-CcEEEeeeecCCCCCCeeeeEEEEEecC---CCcEEEEEEEeCC
Q 040360            8 GYRTIELTVLSGEDLRIDRRLIKKNAFAIVQTDTS-FDYCTTKVDESGGSHPSWNEKLVIELPM---HARFITVQVQCKS   83 (198)
Q Consensus         8 ~~~~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~-~~~~~T~v~~~~g~nP~WNE~f~f~v~~---~~~~L~~eV~~~~   83 (198)
                      ....|+|+|++|+||+..+..+..||||+|++.+. .++++|++.+++ .||.|||+|.|.++.   ....|.|+|||++
T Consensus        32 ~~~~L~V~V~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~kT~~~~~t-~~P~wne~f~f~i~~~~l~~~~L~i~V~d~d  110 (143)
T d1rsya_          32 QNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKT-LNPVFNEQFTFKVPYSELGGKTLVMAVYDFD  110 (143)
T ss_dssp             TTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETTCCSCEECCCCTTC-SSCEEEEEEEECCCHHHHTTCEEEEEEEECC
T ss_pred             CCCEEEEEEEEccCCCCCCCCCCCCeEEEEEEcCCCCeeEEEEEeccc-cCcceeeeeEEEEEeeccCCceEEEEEEEcC
Confidence            34689999999999987777788999999999442 367899998876 999999999999864   2468999999998


Q ss_pred             CCCCCCCCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEeeC
Q 040360           84 KSSSSGNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRN  127 (198)
Q Consensus        84 ~~~~~g~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~  127 (198)
                      .   ++    ++++||.+.|+|.++..+.     ....||+|..
T Consensus       111 ~---~~----~~~~iG~~~i~L~~~~~~~-----~~~~W~~L~s  142 (143)
T d1rsya_         111 R---FS----KHDIIGEFKVPMNTVDFGH-----VTEEWRDLQS  142 (143)
T ss_dssp             S---SS----CCEEEEEEEEEGGGCCCSS-----CEEEEEECBC
T ss_pred             C---CC----CCcEEEEEEEEchhccCCC-----CCccEEeCCC
Confidence            7   66    3889999999999986542     2457999863

>d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Piccolo
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.76  E-value=2.5e-19  Score=135.52  Aligned_cols=107  Identities=17%  Similarity=0.137  Sum_probs=86.2

Q ss_pred             eEEEEEEEEeeCCCCCCCCCcCCcEEEEEECCC------------CcEEEeeeecCCCCCCeeeeEEEEEe-cC---CCc
Q 040360           10 RTIELTVLSGEDLRIDRRLIKKNAFAIVQTDTS------------FDYCTTKVDESGGSHPSWNEKLVIEL-PM---HAR   73 (198)
Q Consensus        10 ~~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~------------~~~~~T~v~~~~g~nP~WNE~f~f~v-~~---~~~   73 (198)
                      +.|.|+|++|+||+..+..+..||||+|++.+.            ..+++|++++++ .||.|||+|.|.+ +.   ...
T Consensus        18 ~~L~V~V~~A~~L~~~d~~g~~DpyV~v~l~~~~~~~~~~~~~~~~~~~kT~v~~~t-~nP~wne~f~f~~~~~~~~~~~   96 (142)
T d1rh8a_          18 GNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKS-LNPEWNQTVIYKSISMEQLMKK   96 (142)
T ss_dssp             TEEEEEEEEEESCCCCSSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHHH-HSCEEEEEEEECSCCHHHHTTC
T ss_pred             CEEEEEEEEeECCCCcCCCCCCCcCEEEEEecCcccccccccCCCceeeeccCCcCC-CCceeEEEEEEeeecccccCCC
Confidence            689999999999988777889999999999642            123468888776 8999999999984 32   346


Q ss_pred             EEEEEEEeCCCCCCCCCCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEeeCCC
Q 040360           74 FITVQVQCKSKSSSSGNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRNAK  129 (198)
Q Consensus        74 ~L~~eV~~~~~~~~~g~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~~~  129 (198)
                      .|.|+|||++.   +++    |++||++.|+|.++..+..     ...||+|...+
T Consensus        97 ~L~i~V~d~d~---~~~----~~~lG~~~i~L~~l~~~~~-----~~~W~~L~~~~  140 (142)
T d1rh8a_          97 TLEVTVWDYDR---FSS----NDFLGEVLIDLSSTSHLDN-----TPRWYPLKEQT  140 (142)
T ss_dssp             EEEEEEEEECS---SSC----EEEEEEEEEETTSCGGGTT-----CCEEEECBCCC
T ss_pred             EEEEEEEEecC---CCC----CeeeEEEEEEhHHcCCCCC-----ceEEEECcCcC
Confidence            89999999987   663    8999999999999976531     24699998754

>d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Regulating synaptic membrane exocytosis protein, rim2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=9.3e-18  Score=124.74  Aligned_cols=107  Identities=14%  Similarity=0.197  Sum_probs=82.0

Q ss_pred             cceEEEEEEEEeeCCCCCCCCCcCCcEEEEEECCC---CcEEEeeeecCCCCCCeeeeEEEEE-ecCC---CcEEEEEEE
Q 040360            8 GYRTIELTVLSGEDLRIDRRLIKKNAFAIVQTDTS---FDYCTTKVDESGGSHPSWNEKLVIE-LPMH---ARFITVQVQ   80 (198)
Q Consensus         8 ~~~~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~---~~~~~T~v~~~~g~nP~WNE~f~f~-v~~~---~~~L~~eV~   80 (198)
                      ..+.|.|+|++|+||+..+..+..||||+|.+.++   ..+++|++.+++ .||.|||+|.|. ++..   ...|.|+||
T Consensus        12 ~~~~L~V~V~~a~~L~~~~~~~~~dpyVkv~l~~~~~~~~~~kT~~~~~t-~~P~wne~f~f~~~~~~~l~~~~L~i~v~   90 (125)
T d2bwqa1          12 VGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKT-LEPKWNQTFIYSPVHRREFRERMLEITLW   90 (125)
T ss_dssp             TTTEEEEEEEEEESCCCCTTSCCBCEEEEEEEESSCSGGGEEECCCCSSB-SSCEEEEEEEECSCCGGGGGGCEEEEEEE
T ss_pred             CCCEEEEEEEEeECCCCcCCCCCCCEEEEEEEeCCCCCccccccCEEcCC-CCCEEccEEEEeeeChhhcCCCEEEEEEE
Confidence            45789999999999987777788999999999432   356899999876 999999999997 4432   358999999


Q ss_pred             eCCCCCCCCCCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEee
Q 040360           81 CKSKSSSSGNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLR  126 (198)
Q Consensus        81 ~~~~~~~~g~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~  126 (198)
                      |++.   .+.  .++.+||++.|+|+++....      ...||+|+
T Consensus        91 d~~~---~~~--~~~~~iG~~~i~l~~~~~~~------~~~Wy~L~  125 (125)
T d2bwqa1          91 DQAR---VRE--EESEFLGEILIELETALLDD------EPHWYKLQ  125 (125)
T ss_dssp             EC------------CEEEEEEEEEGGGCCCSS------CEEEEECC
T ss_pred             ECCC---CCC--CCCeeEEEEEEEchhcCCCC------CCEEEeCc
Confidence            9876   321  13669999999999987542      13599984

>d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=2.1e-17  Score=125.11  Aligned_cols=95  Identities=12%  Similarity=0.164  Sum_probs=77.7

Q ss_pred             cceEEEEEEEEeeCCCCCCCCC-cCCcEEEEEECCC-CcEEEeeeecCCCCCCeeeeEEEEE-ecCC---CcEEEEEEEe
Q 040360            8 GYRTIELTVLSGEDLRIDRRLI-KKNAFAIVQTDTS-FDYCTTKVDESGGSHPSWNEKLVIE-LPMH---ARFITVQVQC   81 (198)
Q Consensus         8 ~~~~LeVtVlsA~~L~~~~~~~-~~dpYvvv~~~~~-~~~~~T~v~~~~g~nP~WNE~f~f~-v~~~---~~~L~~eV~~   81 (198)
                      ..+.|.|+|++|+||+..+..+ ..||||++.+.++ ..+++|++.+++ .||.|||+|.|. ++..   ...|.|+|||
T Consensus        20 ~~~~L~V~V~~a~~L~~~d~~~~~~dpyV~v~l~~~~~~~~kT~v~~~t-~nP~wne~f~f~~~~~~~l~~~~L~~~V~d   98 (138)
T d1ugka_          20 ERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKT-LDPAFDETFTFYGIPYTQIQELALHFTILS   98 (138)
T ss_dssp             GGTEEEEEEEEEESCCCCBTTTTBCEEEEEEEEETTTCSEEECCCCSSC-SSCEEEEEEEEECCCSTTGGGCEEEEEEEE
T ss_pred             CCCEEEEEEEEecCCCCCCCCCCccceEEEEEEcCCCCEeEeCeeEeCC-CCCceeeEEEEeeeCHHHcccceEEEEEEE
Confidence            3468999999999998655554 4799999999542 467899999876 999999999997 4432   3589999999


Q ss_pred             CCCCCCCCCCCCCCceeEEEEEeCccccC
Q 040360           82 KSKSSSSGNNNNHNKIVGFARIPVSDFIG  110 (198)
Q Consensus        82 ~~~~~~~g~~~~~d~~IG~a~IpL~~l~~  110 (198)
                      ++.   ++    +|++||++.|+|+++..
T Consensus        99 ~d~---~~----~~~~iG~~~i~L~~~~~  120 (138)
T d1ugka_          99 FDR---FS----RDDIIGEVLIPLSGIEL  120 (138)
T ss_dssp             ECS---SC----CCCCCEEEEEECTTCCC
T ss_pred             CCC---CC----CCcEEEEEEEEcccccC
Confidence            887   66    38999999999999853

>d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin XIII
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=3.2e-17  Score=124.13  Aligned_cols=105  Identities=12%  Similarity=0.090  Sum_probs=84.8

Q ss_pred             cceEEEEEEEEeeCCCCCCCCCcCCcEEEEEECCC--CcEEEeeeecCCCCCCeeeeEEEEEecCC---CcEEEEEEEeC
Q 040360            8 GYRTIELTVLSGEDLRIDRRLIKKNAFAIVQTDTS--FDYCTTKVDESGGSHPSWNEKLVIELPMH---ARFITVQVQCK   82 (198)
Q Consensus         8 ~~~~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~--~~~~~T~v~~~~g~nP~WNE~f~f~v~~~---~~~L~~eV~~~   82 (198)
                      ..+.|.|+|+.|++|..   .+..||||++.+.+.  ...++|++.+++ .||.|||.|.|.++..   ...|.|+|||+
T Consensus        24 ~~~~L~V~v~~a~~L~~---~g~~dpyVkv~l~~~~~~~~~kT~v~~~~-~~P~wne~f~f~v~~~~l~~~~L~~~V~d~   99 (138)
T d1wfma_          24 QKAELFVTRLEAVTSNH---DGGCDCYVQGSVANRTGSVEAQTALKKRQ-LHTTWEEGLVLPLAEEELPTATLTLTLRTC   99 (138)
T ss_dssp             TTTEEEEEEEEEECCCC---SSCCCEEEEEEEEETTEEEEEECCCCCCC-SSEECSSCEEEECCTTSSTTCEEEEEEEEC
T ss_pred             CCCEEEEEEEEcCCCCC---CCCcCcEEEEEECCCCCccceeeeEECCC-CCceEeeeEEEEeeehhccceEEEEEEeee
Confidence            34789999999999953   356899999999652  235789998876 8999999999999753   46899999998


Q ss_pred             CCCCCCCCCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEeeCC
Q 040360           83 SKSSSSGNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRNA  128 (198)
Q Consensus        83 ~~~~~~g~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~~  128 (198)
                      +.   ++    ++++||++.|+|.++..+..     ...||+|...
T Consensus       100 ~~---~~----~~~~iG~~~i~L~~l~~~~~-----~~~W~~L~~~  133 (138)
T d1wfma_         100 DR---FS----RHSVAGELRLGLDGTSVPLG-----AAQWGELKTS  133 (138)
T ss_dssp             CS---SC----TTSCSEEEEEESSSSSSCTT-----CCEEEECCCC
T ss_pred             cc---cc----cceeeeEEEEEhHHccCCCC-----ceEeEeCCCC
Confidence            87   66    38999999999999864431     3479999763

>d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.71  E-value=2.7e-17  Score=124.27  Aligned_cols=112  Identities=14%  Similarity=0.102  Sum_probs=80.8

Q ss_pred             cceEEEEEEEEeeCCCCCCCCCcCCcEEEEEECCC---CcEEEeeeecCCCCCCeeeeEEEEEecCC---CcEEEEEEEe
Q 040360            8 GYRTIELTVLSGEDLRIDRRLIKKNAFAIVQTDTS---FDYCTTKVDESGGSHPSWNEKLVIELPMH---ARFITVQVQC   81 (198)
Q Consensus         8 ~~~~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~---~~~~~T~v~~~~g~nP~WNE~f~f~v~~~---~~~L~~eV~~   81 (198)
                      ..+.|.|+|++|++|...+..+..||||++.+.++   ..+++|++.+++ .||.|||+|.|.++..   ...|.|+|||
T Consensus        13 ~~~~L~V~v~~a~~L~~~~~~~~~dpyvkv~l~~~~~~~~~~kT~~~~~t-~~P~wne~f~F~v~~~~~~~~~l~i~v~d   91 (138)
T d1w15a_          13 TTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCT-PNAVFNELFVFDIPCESLEEISVEFLVLD   91 (138)
T ss_dssp             TTTEEEEEEEEEESCC------CCCEEEEEEEEETTEEEEEEECCCCCSC-SSEEEEEEEEEECCSSSSTTEEEEEEEEE
T ss_pred             CCCEEEEEEEEeECCCCCCCCCCcCEEEEEEEeCCcccCccccceeECCC-CCCeECcEEEEEecHHHhCccEEEEEEEe
Confidence            34689999999999987777788999999998432   235678888876 9999999999998653   4579999999


Q ss_pred             CCCCCCCCCCCCCCceeEEEEEeCccccCCCC-------CCCceEeEEEEeeC
Q 040360           82 KSKSSSSGNNNNHNKIVGFARIPVSDFIGGYA-------PENYLHFLSYRLRN  127 (198)
Q Consensus        82 ~~~~~~~g~~~~~d~~IG~a~IpL~~l~~~~~-------~~~~~~~~sy~L~~  127 (198)
                      ++.   +++    +++||++.|+|.+...+..       ..+.....||.|.+
T Consensus        92 ~~~---~~~----~~~iG~~~i~l~~~~~~~~hW~~ll~~~~k~i~~Wh~L~~  137 (138)
T d1w15a_          92 SER---GSR----NEVIGRLVLGATAEGSGGGHWKEICDFPRRQIAKWHMLCD  137 (138)
T ss_dssp             CCT---TSC----CEEEEEEEESTTCCSHHHHHHHHHHHSTTCCEEEEEECBC
T ss_pred             CCC---CCC----CCEEEEEEEcchhCCchHHHHHHHHhCCCCeeeECeEccc
Confidence            987   663    8999999999986432210       01223456888764

>d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2b-domain of rabphilin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.71  E-value=5.9e-17  Score=121.55  Aligned_cols=94  Identities=11%  Similarity=0.097  Sum_probs=79.5

Q ss_pred             cceEEEEEEEEeeCCCCCCCCCcCCcEEEEEECCC---CcEEEeeeecCCCCCCeeeeEEEEEecCC---CcEEEEEEEe
Q 040360            8 GYRTIELTVLSGEDLRIDRRLIKKNAFAIVQTDTS---FDYCTTKVDESGGSHPSWNEKLVIELPMH---ARFITVQVQC   81 (198)
Q Consensus         8 ~~~~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~---~~~~~T~v~~~~g~nP~WNE~f~f~v~~~---~~~L~~eV~~   81 (198)
                      ..+.|.|+|++|++|+..+..+..||||+|++.++   ..+++|++.+++ .||.|||+|.|.++..   ...|.|.|++
T Consensus        13 ~~~~L~V~v~~a~nL~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t-~~P~wne~f~f~v~~~~l~~~~l~v~v~~   91 (137)
T d2cm5a1          13 QQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKT-LNPEFNEEFFYDIKHSDLAKKSLDISVWD   91 (137)
T ss_dssp             TTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETC---CCEEECCCCCSC-SSCEEEEEEEEECCGGGGGGCEEEEEEEE
T ss_pred             CCCEEEEEEEEEECCCCCCCCCCcCeEEEEEEEcCCccceeecCEeEcCC-CCCccceEEEEEeEHHHccccEEEEEeee
Confidence            45789999999999987777788999999998542   356899999887 9999999999999753   4689999999


Q ss_pred             CCCCCCCCCCCCCCceeEEEEEeCcccc
Q 040360           82 KSKSSSSGNNNNHNKIVGFARIPVSDFI  109 (198)
Q Consensus        82 ~~~~~~~g~~~~~d~~IG~a~IpL~~l~  109 (198)
                      ++.   +++    +++||++.|+|.++.
T Consensus        92 ~~~---~~~----~~~iG~~~i~l~~~~  112 (137)
T d2cm5a1          92 YDI---GKS----NDYIGGCQLGISAKG  112 (137)
T ss_dssp             CCS---SSC----CEEEEEEEEETTCCH
T ss_pred             CCC---CCC----CCEEEEEEeCccccC
Confidence            877   553    899999999998754

>d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.70  E-value=5.2e-17  Score=125.44  Aligned_cols=113  Identities=14%  Similarity=0.128  Sum_probs=87.3

Q ss_pred             CcceEEEEEEEEeeCCCCCCCCCcCCcEEEEEECCC---CcEEEeeeecCCCCCCeeeeEEEEEecCC---CcEEEEEEE
Q 040360            7 SGYRTIELTVLSGEDLRIDRRLIKKNAFAIVQTDTS---FDYCTTKVDESGGSHPSWNEKLVIELPMH---ARFITVQVQ   80 (198)
Q Consensus         7 m~~~~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~---~~~~~T~v~~~~g~nP~WNE~f~f~v~~~---~~~L~~eV~   80 (198)
                      ...+.|.|+|++|++|+..+..+.+||||++.+.+.   ..+++|++.+++ .||+|||+|.|.++..   ...|.|+||
T Consensus        22 ~~~~~L~V~V~~a~~L~~~~~~~~~dpyV~v~l~~~~~~~~~~kT~v~~~t-~nP~wne~f~F~v~~~~l~~~~l~i~v~  100 (157)
T d1uowa_          22 PTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNT-LNPYYNESFSFEVPFEQIQKVQVVVTVL  100 (157)
T ss_dssp             TTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSC-SSCEEEEEEEEECCGGGGGGCEEEEEEE
T ss_pred             CCCCEEEEEEEEEEEcccccCCCCCCeeEEEEEecCCccccceecccccCC-CCcccCCeEEEEecHHHcCccEEEEEEc
Confidence            345799999999999987777789999999999653   134578888765 9999999999999753   458999999


Q ss_pred             eCCCCCCCCCCCCCCceeEEEEEeCccccCCC-------CCCCceEeEEEEeeC
Q 040360           81 CKSKSSSSGNNNNHNKIVGFARIPVSDFIGGY-------APENYLHFLSYRLRN  127 (198)
Q Consensus        81 ~~~~~~~~g~~~~~d~~IG~a~IpL~~l~~~~-------~~~~~~~~~sy~L~~  127 (198)
                      +++.   +++    +++||++.|+|.++-.+.       ...+.....||.|+.
T Consensus       101 d~~~---~~~----~~~iG~~~i~l~~~~~~~~hW~~~~~~~~~~v~~Wh~L~~  147 (157)
T d1uowa_         101 DYDK---IGK----NDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQV  147 (157)
T ss_dssp             ECCS---SSC----CCEEEEEEEETTCCHHHHHHHHHHHHSTTCCEEEEEECBC
T ss_pred             ccCC---CCC----CceeEEEEEecccCChhHHHHHHHHhCCCCceeEeEeCCC
Confidence            9987   663    899999999997642110       011223467999975

>d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C delta
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.69  E-value=5.3e-17  Score=121.36  Aligned_cols=116  Identities=12%  Similarity=0.047  Sum_probs=87.1

Q ss_pred             eEEEEEEEEeeCCCCCCCCCcCCcEEEEEECCC---CcEEEeeeecCCCCCCeeeeEEEEEecCCCcEEEEEEEeCCCCC
Q 040360           10 RTIELTVLSGEDLRIDRRLIKKNAFAIVQTDTS---FDYCTTKVDESGGSHPSWNEKLVIELPMHARFITVQVQCKSKSS   86 (198)
Q Consensus        10 ~~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~---~~~~~T~v~~~~g~nP~WNE~f~f~v~~~~~~L~~eV~~~~~~~   86 (198)
                      -.|+|+|...+-.......+..||||+|.+++.   ....+|++.+++ .||+|||+|.|.+.. .+.|.|.||+++   
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~dPY~~v~l~~~~~~~~~~~t~~~kkT-~nP~WnE~F~~~v~~-~~~l~i~V~d~d---   77 (123)
T d1bdya_           3 PFLRISFNSYELGSLQAEDDASQPFCAVKMKEALTTDRGKTLVQKKPT-MYPEWKSTFDAHIYE-GRVIQIVLMRAA---   77 (123)
T ss_dssp             EEEEEEEEEEECCTTCCCCCSCCCEEEEEEEEECCGGGTTBEEECSCC-BCCCTTCEEEEECCT-TCEEEEEEEEET---
T ss_pred             CeEEEEEEEeecccCCCCCCCCCCEEEEEEcCccccccceEEEEeCCC-CCcccceEEEEEEcc-ccEEEEEEEEcc---
Confidence            356666655533333455678999999999652   123467777776 999999999999976 468999999853   


Q ss_pred             CCCCCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEeeCCCCCccEEEEEEEEEee
Q 040360           87 SSGNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRNAKGDKNGIINVSVRSLK  144 (198)
Q Consensus        87 ~~g~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~~~Gk~~G~I~lsi~~f~  144 (198)
                              ++++|.+.|++.+|.......+.....|+.|.     ++|+|++.++ |.
T Consensus        78 --------d~~~g~~~i~l~~l~~~~~~~~~~~~~W~~L~-----~~Gkl~l~v~-~f  121 (123)
T d1bdya_          78 --------EDPMSEVTVGVSVLAERCKKNNGKAEFWLDLQ-----PQAKVLMCVQ-YF  121 (123)
T ss_dssp             --------TEEEEEEEEEHHHHHHHHHTTTTEEEEEEECB-----SSCEEEEEEE-EE
T ss_pred             --------ccccCccEEehhheeeccccCCCcccEEEeCC-----CCEEEEEEEE-Ee
Confidence                    57999999999999765433344577899984     6899999999 54

>d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Phospholipase C-beta-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=2e-15  Score=112.58  Aligned_cols=109  Identities=23%  Similarity=0.339  Sum_probs=79.4

Q ss_pred             eEEEEEEEEeeCCCCCCCCCcCCcEEEEEECC---C-CcEEEeee-ecCCCCCCeeeeE-EEE-EecC-CCcEEEEEEEe
Q 040360           10 RTIELTVLSGEDLRIDRRLIKKNAFAIVQTDT---S-FDYCTTKV-DESGGSHPSWNEK-LVI-ELPM-HARFITVQVQC   81 (198)
Q Consensus        10 ~~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~---~-~~~~~T~v-~~~~g~nP~WNE~-f~f-~v~~-~~~~L~~eV~~   81 (198)
                      .+|.|+|+||++|..    .+.||||+|++.+   + ..+.+|++ .++++.||.|||+ |.| .+.. +...|.|+|+|
T Consensus         1 ~tl~V~Visaq~L~~----~~~dPyV~V~l~g~~~D~~~~~~t~~~~~~n~~nP~wne~~~~~~~~~~~~l~~L~f~V~D   76 (122)
T d2zkmx2           1 TTLSITVISGQFLSE----RSVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPELASLRVAVME   76 (122)
T ss_dssp             EEEEEEEEEEESCCS----SCCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGGGCEEEEEEEE
T ss_pred             CEEEEEEEEeeCCCC----CCCCcEEEEEEECcCCCCCccEEEEEEEeCCeecceEcccEeEEEecCCCcccEEEEEEEC
Confidence            379999999999963    2579999999943   1 34455554 4556799999986 444 3433 34689999998


Q ss_pred             CCCCCCCCCCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEeeCCCCCc--cEEEEEEEE
Q 040360           82 KSKSSSSGNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRNAKGDK--NGIINVSVR  141 (198)
Q Consensus        82 ~~~~~~~g~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~~~Gk~--~G~I~lsi~  141 (198)
                      +      +     |++||++.|||+.+..|+        .+.+|+++.|++  ...|-+.|.
T Consensus        77 ~------d-----~~~lG~~~ipl~~l~~Gy--------R~vpL~~~~g~~l~~~~L~v~i~  119 (122)
T d2zkmx2          77 E------G-----NKFLGHRIIPINALNSGY--------HHLCLHSESNMPLTMPALFIFLE  119 (122)
T ss_dssp             T------T-----TEEEEEEEEEGGGBCCEE--------EEEEEECTTCCEEEEEEEEEEEE
T ss_pred             C------C-----CCEEEEEEEEcccCcCCc--------eEEEccCCCcCCCCCceEEEEEE
Confidence            4      2     679999999999997764        577999999984  344444443

>d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.62  E-value=1.3e-16  Score=121.20  Aligned_cols=93  Identities=15%  Similarity=0.226  Sum_probs=78.6

Q ss_pred             ceEEEEEEEEeeCCCCCCCCCcCCcEEEEEECCC---CcEEEeeeecCCCCCCeeeeEEEEEecCC---CcEEEEEEEeC
Q 040360            9 YRTIELTVLSGEDLRIDRRLIKKNAFAIVQTDTS---FDYCTTKVDESGGSHPSWNEKLVIELPMH---ARFITVQVQCK   82 (198)
Q Consensus         9 ~~~LeVtVlsA~~L~~~~~~~~~dpYvvv~~~~~---~~~~~T~v~~~~g~nP~WNE~f~f~v~~~---~~~L~~eV~~~   82 (198)
                      .+.|.|+|++|+||+..+..+..||||+|.+.+.   ..+++|++.+++ .||.|||+|.|.++..   ...|.|+|+++
T Consensus        19 ~~~L~V~V~~a~nL~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t-~~P~wne~f~F~v~~~~~~~~~l~v~v~d~   97 (145)
T d1dqva2          19 AGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNT-LNPTYNEALVFDVAPESVENVGLSIAVVDY   97 (145)
T ss_dssp             TTEEEEEEEEEESCCCCSSSSCCCEEEEECCCTTCCTTSCEECCCCCSC-SSCEEEECCCCCCCSGGGGSCCCCCEEEEC
T ss_pred             CCEEEEEEEEEeCCCCcCCCCCcCceEEEEEccCCccceeecCEEEeCC-CCceecceEEEEEehhhcCCCEEEEEEEec
Confidence            4789999999999987777788999999999763   235789999876 9999999999998753   35799999998


Q ss_pred             CCCCCCCCCCCCCceeEEEEEeCcccc
Q 040360           83 SKSSSSGNNNNHNKIVGFARIPVSDFI  109 (198)
Q Consensus        83 ~~~~~~g~~~~~d~~IG~a~IpL~~l~  109 (198)
                      +.   ++    ++++||.+.|+|..+.
T Consensus        98 ~~---~~----~~~~iG~~~i~l~~~~  117 (145)
T d1dqva2          98 DC---IG----HNEVIGVCRVGPEAAD  117 (145)
T ss_dssp             CS---SS----CCEEEEECCCSSCTTC
T ss_pred             CC---CC----CCcEEEEEEECchHcC
Confidence            87   66    3889999999998763

>d2yrba1 b.7.1.1 (A:596-737) Fantom {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Fantom
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.78  E-value=0.015  Score=42.79  Aligned_cols=119  Identities=18%  Similarity=0.210  Sum_probs=87.4

Q ss_pred             ceEEEEEEEEeeC----CCCCCCCCcCCcEEEEEECCCCcEEEeeeecCCCCCCeeeeEEEEEecCC--------CcEEE
Q 040360            9 YRTIELTVLSGED----LRIDRRLIKKNAFAIVQTDTSFDYCTTKVDESGGSHPSWNEKLVIELPMH--------ARFIT   76 (198)
Q Consensus         9 ~~~LeVtVlsA~~----L~~~~~~~~~dpYvvv~~~~~~~~~~T~v~~~~g~nP~WNE~f~f~v~~~--------~~~L~   76 (198)
                      -+.+||.|.++.-    |...+ ...+..||++.+-. .+.+.|.+..  |.+|.+|-+..+.+..+        ...+.
T Consensus         9 EnlfEihi~~~~~s~e~l~~~~-d~~p~tF~T~~Fyd-~Etq~TPv~~--g~~p~ynfts~Y~V~~d~~fl~YL~~~~~~   84 (142)
T d2yrba1           9 ENLFEIHINKVTFSSEVLQASG-DKEPVTFCTYAFYD-FELQTTPVVR--GLHPEYNFTSQYLVHVNDLFLQYIQKNTIT   84 (142)
T ss_dssp             CEEEEEEEEEECCCHHHHHHHC-SSCCEEEEEECSTT-CCCEECCCEE--SSSCCCCEEEEEEECCSHHHHHHHHHCCEE
T ss_pred             CcEEEEEEeeEEEcHHHHhhcc-CCCCcEEEEEEEEe-eeeecCceec--CCCCcceeEEEEEEccCHHHHHHHhhCCEE
Confidence            3678898888732    21111 23456799999988 6778899887  47999999999988764        36899


Q ss_pred             EEEEeCCCCCCCCCCCCCCceeEEEEEeCccccCCCCCCCceEeEEEEeeCCCCC--ccEEEEEEEEEee
Q 040360           77 VQVQCKSKSSSSGNNNNHNKIVGFARIPVSDFIGGYAPENYLHFLSYRLRNAKGD--KNGIINVSVRSLK  144 (198)
Q Consensus        77 ~eV~~~~~~~~~g~~~~~d~~IG~a~IpL~~l~~~~~~~~~~~~~sy~L~~~~Gk--~~G~I~lsi~~f~  144 (198)
                      +|++....   ..     -+.|+.+.|.|.++++..  .+  ...+-.|.+..|.  .-|.|.+.+| +.
T Consensus        85 lelhqa~g---~~-----~~tvA~g~i~l~~lLd~~--~r--~~~s~~l~g~~~~~~~~G~leyw~r-lr  141 (142)
T d2yrba1          85 LEVHQAYS---TE-----YETIAACQLKFHEILEKS--GR--IFCTASLIGTKGDIPNFGTVEYWFR-LR  141 (142)
T ss_dssp             EEEEEECS---SC-----EEEEEEEEECCSHHHHCC--SC--EEEEEEECBSSSCCTTSEEEEEEEE-EE
T ss_pred             EEEEeecC---CC-----cceeEEEEEEhhHhhCcc--cc--ccceeEEEccCCCcceEEEEEEEEE-EE
Confidence            99987543   23     568999999999999753  22  3456678887766  5899999998 65