Citrus Sinensis ID: 040370

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------23
Protein Sequence
FFDFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEIL
Secondary Structure (PSIPRED)
cccccccccccEEEEccccccEEEEEEcccccEEEEEcccccEEEEEcccccEEEEEccccccccccEEEEEEcccccEEEEccccccEEEEEcccccEEEccccccccccEEEEEEcccccEEEEEEccccEEEEEcccccEEEEEEcccccccEEEEEEcccccEEEEccccccEEEEEEccccHHHccccccccccEEEEEEcccccEEEEEEccccEEEEEccc
Secondary Structure Prediction (SSPRO)
ccccccccccEEEEEEcccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEccccccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEEcccccEEEEEEEEcccccEEEEcccccEEEEEEcccccEEEEEEcccccccEEEEEEcccccEEEEEcccccEEEEEEcccccEEEEEcccccccEEEEEEcccccEEEEEccccEEEEEEEEc
Coil and Loop (DISEMBL)
FFDFSKATAKRAFRVIQdthnvrsvsfhpsgdfllagtdhpiahlydvntfqcylsanvpeisvngainqvrysstggmyvtaskdgairlwdgvsaNCVRSIVGahgtaeatsanftkdqrfvlscgkdstvKLWEVSSGRLVKQYLGATHTQLRFQAvfndteefvlsidepsneIVIWDALTAEKVAKWssnhigaprwiehspaeaafitcgtdRSVRFWKEIL
Flexible Loop (DISEMBL)
ffdfskatakrafrviqdthnvrsvSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGtaeatsanftkdqrfVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEIL
Low Complexity Region (SEG)
FFDFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEIL
Disordered region (IsUnstruct)
**********RAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWK***
Disordered Region (DISOPRED)
FFDFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEIL
Disordered Region (DISEMBL)
********AKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEIL
Disordered Region (DISPRO)
FFDFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEIL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
FFDFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEIL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	228	2.2.26 [Sep-21-2011]
Q05048	431	Cleavage stimulation fact	yes	no	0.978	0.517	0.502	1e-59
Q5BJQ6	431	Cleavage stimulation fact	yes	no	0.978	0.517	0.493	7e-59
Q99LC2	431	Cleavage stimulation fact	yes	no	0.978	0.517	0.493	7e-59
Q5R8K2	431	Cleavage stimulation fact	yes	no	0.978	0.517	0.497	1e-58
Q4V7Y7	655	Katanin p80 WD40 repeat-c	N/A	no	0.811	0.282	0.302	2e-14
Q4V8C4	328	WD repeat-containing prot	no	no	0.688	0.478	0.297	5e-14
Q9D7H2	328	WD repeat-containing prot	no	no	0.688	0.478	0.291	6e-14
Q8YRI1	1526	Uncharacterized WD repeat	yes	no	0.842	0.125	0.294	3e-13
Q9BVA0	655	Katanin p80 WD40 repeat-c	no	no	0.890	0.309	0.279	4e-13
Q8BG40	658	Katanin p80 WD40 repeat-c	no	no	0.890	0.308	0.279	4e-13

>sp|Q05048|CSTF1_HUMAN Cleavage stimulation factor subunit 1 OS=Homo sapiens GN=CSTF1 PE=1 SV=1

 Score =  229 bits (583), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 114/227 (50%), Positives = 148/227 (65%), Gaps = 4/227 (1%)

Query: 1   FFDFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVP 60
            FD+SK +AKRAF+ IQ+   +RS+SFHPSGDF+L GT HP   LYD+NTFQC++S N P
Sbjct: 199 LFDYSKPSAKRAFKYIQEAEMLRSISFHPSGDFILVGTQHPTLRLYDINTFQCFVSCN-P 257

Query: 61  EISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKD 120
           +     AI  V Y+S+  MYVT SKDG I+LWDGVS  C+ +   AH  AE  SA F+K+
Sbjct: 258 QDQHTDAICSVNYNSSANMYVTGSKDGCIKLWDGVSNRCITTFEKAHDGAEVCSAIFSKN 317

Query: 121 QRFVLSCGKDSTVKLWEVSSGRLVKQYLGA--THTQL-RFQAVFNDTEEFVLSIDEPSNE 177
            +++LS GKDS  KLWE+S+GR + +Y GA  +  Q+ R QAVFN TE++VL  DE +  
Sbjct: 318 SKYILSSGKDSVAKLWEISTGRTLVRYTGAGLSGRQVHRTQAVFNHTEDYVLLPDERTIS 377

Query: 178 IVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFW 224
           +  WD+ TAE+    S  H    R I HSP    F+TC  D   RFW
Sbjct: 378 LCCWDSRTAERRNLLSLGHNNIVRCIVHSPTNPGFMTCSDDFRARFW 424

One of the multiple factors required for polyadenylation and 3'-end cleavage of mammalian pre-mRNAs. May be responsible for the interaction of CSTF with other factors to form a stable complex on the pre-mRNA.
Homo sapiens (taxid: 9606)

>sp|Q5BJQ6|CSTF1_RAT Cleavage stimulation factor subunit 1 OS=Rattus norvegicus GN=Cstf1 PE=2 SV=1

 Score =  226 bits (577), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 112/227 (49%), Positives = 147/227 (64%), Gaps = 4/227 (1%)

Query: 1   FFDFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVP 60
            FD+SK +AKRAF+ IQ+   +RS+SFHPSGDF+L GT HP   LYD+NTFQC++S N P
Sbjct: 199 LFDYSKPSAKRAFKYIQEAEMLRSISFHPSGDFILVGTQHPTLRLYDINTFQCFVSCN-P 257

Query: 61  EISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKD 120
           +     AI  V Y+ +  MYVT SKDG I+LWDGVS  C+ +   AH  AE  SA F+K+
Sbjct: 258 QDQHTDAICSVNYNPSANMYVTGSKDGCIKLWDGVSNRCITTFEKAHDGAEVCSAIFSKN 317

Query: 121 QRFVLSCGKDSTVKLWEVSSGRLVKQYLGA--THTQL-RFQAVFNDTEEFVLSIDEPSNE 177
            +++LS GKDS  KLWE+S+GR + +Y GA  +  Q+ R QAVFN TE+++L  DE +  
Sbjct: 318 SKYILSSGKDSVAKLWEISTGRTLVRYTGAGLSGRQVHRTQAVFNHTEDYILLPDERTIS 377

Query: 178 IVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFW 224
           +  WD+ TAE+    S  H    R I HSP    F+TC  D   RFW
Sbjct: 378 LCCWDSRTAERRNLLSLGHNNIVRCIVHSPTNPGFMTCSDDFRARFW 424

One of the multiple factors required for polyadenylation and 3'-end cleavage of mammalian pre-mRNAs. May be responsible for the interaction of CSTF with other factors to form a stable complex on the pre-mRNA.

Rattus norvegicus (taxid: 10116)

>sp|Q99LC2|CSTF1_MOUSE Cleavage stimulation factor subunit 1 OS=Mus musculus GN=Cstf1 PE=2 SV=1

 Score =  226 bits (577), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 112/227 (49%), Positives = 147/227 (64%), Gaps = 4/227 (1%)

Query: 1   FFDFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVP 60
            FD+SK +AKRAF+ IQ+   +RS+SFHPSGDF+L GT HP   LYD+NTFQC++S N P
Sbjct: 199 LFDYSKPSAKRAFKYIQEAEMLRSISFHPSGDFILVGTQHPTLRLYDINTFQCFVSCN-P 257

Query: 61  EISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKD 120
           +     AI  V Y+ +  MYVT SKDG I+LWDGVS  C+ +   AH  AE  SA F+K+
Sbjct: 258 QDQHTDAICSVNYNPSANMYVTGSKDGCIKLWDGVSNRCITTFEKAHDGAEVCSAIFSKN 317

Query: 121 QRFVLSCGKDSTVKLWEVSSGRLVKQYLGA--THTQL-RFQAVFNDTEEFVLSIDEPSNE 177
            +++LS GKDS  KLWE+S+GR + +Y GA  +  Q+ R QAVFN TE+++L  DE +  
Sbjct: 318 SKYILSSGKDSVAKLWEISTGRTLVRYTGAGLSGRQVHRTQAVFNHTEDYILLPDERTIS 377

Query: 178 IVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFW 224
           +  WD+ TAE+    S  H    R I HSP    F+TC  D   RFW
Sbjct: 378 LCCWDSRTAERRNLLSLGHNNIVRCIVHSPTNPGFMTCSDDFRARFW 424

One of the multiple factors required for polyadenylation and 3'-end cleavage of mammalian pre-mRNAs. May be responsible for the interaction of CSTF with other factors to form a stable complex on the pre-mRNA.

Mus musculus (taxid: 10090)

>sp|Q5R8K2|CSTF1_PONAB Cleavage stimulation factor subunit 1 OS=Pongo abelii GN=CSTF1 PE=2 SV=1

 Score =  226 bits (576), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 113/227 (49%), Positives = 147/227 (64%), Gaps = 4/227 (1%)

Query: 1   FFDFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVP 60
            FD+SK +AKRAF+ IQ+   +RS+SFHPSGDF+L GT HP   LYD+NTFQC++S N P
Sbjct: 199 LFDYSKPSAKRAFKYIQEAEMLRSISFHPSGDFILVGTQHPTLRLYDINTFQCFVSCN-P 257

Query: 61  EISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKD 120
           +     AI  V Y+S+  MYVT SKDG I+LWDGVS  C+ +   AH  AE  SA F+K+
Sbjct: 258 QDQHADAICSVNYNSSANMYVTGSKDGCIKLWDGVSNRCITTFEKAHDGAEVCSAIFSKN 317

Query: 121 QRFVLSCGKDSTVKLWEVSSGRLVKQYLGA--THTQL-RFQAVFNDTEEFVLSIDEPSNE 177
            +++LS GKDS  KLWE+S+GR + +Y GA  +  Q+ R QAVFN TE++VL  DE +  
Sbjct: 318 SKYILSSGKDSVAKLWEISTGRTLVRYTGAGLSGRQVHRTQAVFNHTEDYVLLPDERTIS 377

Query: 178 IVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFW 224
           +  WD+  AE+    S  H    R I HSP    F+TC  D   RFW
Sbjct: 378 LCCWDSRIAERRNLLSLGHNNIVRCIVHSPTNPGFMTCSDDFRARFW 424

One of the multiple factors required for polyadenylation and 3'-end cleavage of mammalian pre-mRNAs. May be responsible for the interaction of CSTF with other factors to form a stable complex on the pre-mRNA.

Pongo abelii (taxid: 9601)

>sp|Q4V7Y7|KTNB1_XENLA Katanin p80 WD40 repeat-containing subunit B1 OS=Xenopus laevis GN=katnb1 PE=1 SV=1

 Score = 79.7 bits (195), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 59/195 (30%), Positives = 94/195 (48%), Gaps = 10/195 (5%)

Query: 30  SGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAI 89
           SG  +  G D    HL+ VN   C +S           +  VR++++  + V  S+ G++
Sbjct: 32  SGRLVATGGDDCRVHLWSVNKPNCIMSLT----GHTTPVESVRFNNSEELIVAGSQSGSL 87

Query: 90  RLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLG 149
           R+WD  +A  +R+++G    A  +S +F     FV S   D+ +KLW+V     V +Y G
Sbjct: 88  RIWDLEAAKILRTLMGHK--ANVSSLDFHPYGEFVASGSLDTNIKLWDVRRKGCVFRYKG 145

Query: 150 ATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAE 209
             HTQ      F+   +++ S  +  + + +WD LTA K+    S H G    IE  P E
Sbjct: 146 --HTQAVRCLRFSPDGKWLASASD-DHSVKLWD-LTAGKMMAELSEHKGPVNIIEFHPNE 201

Query: 210 AAFITCGTDRSVRFW 224
               +   DR+VRFW
Sbjct: 202 YLLASGSADRTVRFW 216

Participates in a complex which severs microtubules in an ATP-dependent manner. May act to target the enzymatic subunit of this complex to sites of action such as the centrosome. Microtubule severing may promote rapid reorganization of cellular microtubule arrays and the release of microtubules from the centrosome following nucleation.

Xenopus laevis (taxid: 8355)

>sp|Q4V8C4|WDR5B_RAT WD repeat-containing protein 5B OS=Rattus norvegicus GN=Wdr5b PE=2 SV=1

 Score = 77.8 bits (190), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 50/168 (29%), Positives = 87/168 (51%), Gaps = 11/168 (6%)

Query: 27  FHPSGDFLLAGTDHPIAHLYDVNTFQCY--LSANVPEISVNGAINQVRYSSTGGMYVTAS 84
           F+P  + +++G+      +++V T +C   LSA+   IS       V +   G + V+ S
Sbjct: 131 FNPPSNLIVSGSFDESVKIWEVKTGKCLKTLSAHSDPISA------VHFHCNGSLIVSGS 184

Query: 85  KDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLV 144
            DG  R+WD  S  C+R++    G    +   F+ + +++L+   DST+KLW+ S GR +
Sbjct: 185 YDGLCRIWDAASGQCLRTLAD-EGNPPVSFVKFSPNGKYILTATLDSTLKLWDYSRGRCL 243

Query: 145 KQYLGATHTQLRFQAVFNDT-EEFVLSIDEPSNEIVIWDALTAEKVAK 191
           K Y G  + +    A F+ T  ++V+S  E  N + IW+  T E V +
Sbjct: 244 KTYTGHKNEKYCIFASFSVTGRKWVVSGSE-DNMVYIWNLQTKEIVQR 290

May function as a substrate receptor for CUL4-DDB1 ubiquitin E3 ligase complex.

Rattus norvegicus (taxid: 10116)

>sp|Q9D7H2|WDR5B_MOUSE WD repeat-containing protein 5B OS=Mus musculus GN=Wdr5b PE=1 SV=1

 Score = 77.8 bits (190), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 88/168 (52%), Gaps = 11/168 (6%)

Query: 27  FHPSGDFLLAGTDHPIAHLYDVNTFQCY--LSANVPEISVNGAINQVRYSSTGGMYVTAS 84
           F+P  + +++G+      +++V T +C   LSA+   IS       V ++  G + V+ S
Sbjct: 131 FNPPSNLIVSGSFDESVKIWEVKTGKCLKTLSAHSDPISA------VNFNCNGSLIVSGS 184

Query: 85  KDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLV 144
            DG  R+WD  S  C+R++    G    +   F+ + +++L+   D+T+KLW+ S GR +
Sbjct: 185 YDGLCRIWDAASGQCLRTLAD-EGNPPVSFVKFSPNGKYILTATLDNTLKLWDYSRGRCL 243

Query: 145 KQYLGATHTQLRFQAVFNDT-EEFVLSIDEPSNEIVIWDALTAEKVAK 191
           K Y G  + +    A F+ T  ++V+S  E  N + IW+  T E V +
Sbjct: 244 KTYTGHKNEKYCLFASFSVTGRKWVVSGSE-DNMVYIWNLQTKEIVQR 290

May function as a substrate receptor for CUL4-DDB1 ubiquitin E3 ligase complex.

Mus musculus (taxid: 10090)

>sp|Q8YRI1|YY46_NOSS1 Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr3466 PE=4 SV=1

 Score = 75.5 bits (184), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 60/204 (29%), Positives = 97/204 (47%), Gaps = 12/204 (5%)

Query: 22   VRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYV 81
            V SV+F+  G  L  G+      L+D+++ QC+             +  V +SS G M  
Sbjct: 993  VYSVAFNLDGSMLATGSGDQTVRLWDISSSQCFYIFQ----GHTSCVRSVVFSSDGAMLA 1048

Query: 82   TASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSG 141
            + S D  +RLWD  S NC+ ++ G   T+   S  F+ D   + S G D  V+LW++SSG
Sbjct: 1049 SGSDDQTVRLWDISSGNCLYTLQGH--TSCVRSVVFSPDGAMLASGGDDQIVRLWDISSG 1106

Query: 142  RLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIV-IWDALTAEKVAKWSSNHIGAP 200
              +    G T + +RF  VF  +   V   +  S++IV +WD ++++K       H    
Sbjct: 1107 NCLYTLQGYT-SWVRF-LVF--SPNGVTLANGSSDQIVRLWD-ISSKKCLYTLQGHTNWV 1161

Query: 201  RWIEHSPAEAAFITCGTDRSVRFW 224
              +  SP  A   +   D++VR W
Sbjct: 1162 NAVAFSPDGATLASGSGDQTVRLW 1185

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

>sp|Q9BVA0|KTNB1_HUMAN Katanin p80 WD40 repeat-containing subunit B1 OS=Homo sapiens GN=KATNB1 PE=1 SV=1

 Score = 75.1 bits (183), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 62/222 (27%), Positives = 102/222 (45%), Gaps = 19/222 (8%)

Query: 8   TAKRAFRVIQDTHNVRSVSF-HPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNG 66
           TA +   ++    NV S+     SG  L  G D    +L+ +N   C +S          
Sbjct: 9   TAWKLQEIVAHASNVSSLVLGKASGRLLATGGDDCRVNLWSINKPNCIMSLT----GHTS 64

Query: 67  AINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLS 126
            +  VR ++   + V  S+ G+IR+WD  +A  +R+++G    A   S +F     FV S
Sbjct: 65  PVESVRLNTPEELIVAGSQSGSIRVWDLEAAKILRTLMGHK--ANICSLDFHPYGEFVAS 122

Query: 127 CGKDSTVKLWEVSSGRLVKQYLGATHTQ----LRFQAVFNDTEEFVLSIDEPSNEIVIWD 182
             +D+ +KLW++     V +Y G  H+Q    LRF     D +    + D+  + + +WD
Sbjct: 123 GSQDTNIKLWDIRRKGCVFRYRG--HSQAVRCLRFSP---DGKWLASAADD--HTVKLWD 175

Query: 183 ALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFW 224
            LTA K+      H G    +E  P E    +  +DR++RFW
Sbjct: 176 -LTAGKMMSEFPGHTGPVNVVEFHPNEYLLASGSSDRTIRFW 216

Participates in a complex which severs microtubules in an ATP-dependent manner. May act to target the enzymatic subunit of this complex to sites of action such as the centrosome. Microtubule severing may promote rapid reorganization of cellular microtubule arrays and the release of microtubules from the centrosome following nucleation. Microtubule release from the mitotic spindle poles may allow depolymerization of the microtubule end proximal to the spindle pole, leading to poleward microtubule flux and poleward motion of chromosome. Microtubule release within the cell body of neurons may be required for their transport into neuronal processes by microtubule-dependent motor proteins. This transport is required for axonal growth.

Homo sapiens (taxid: 9606)

>sp|Q8BG40|KTNB1_MOUSE Katanin p80 WD40 repeat-containing subunit B1 OS=Mus musculus GN=Katnb1 PE=1 SV=1

 Score = 74.7 bits (182), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 62/222 (27%), Positives = 102/222 (45%), Gaps = 19/222 (8%)

Query: 8   TAKRAFRVIQDTHNVRSVSF-HPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNG 66
           TA +   ++    NV S+     SG  L  G D    +L+ +N   C +S          
Sbjct: 9   TAWKLQEIVAHASNVSSLVLGKASGRLLATGGDDCRVNLWSINKPNCIMSLT----GHTS 64

Query: 67  AINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLS 126
            +  VR ++   + V  S+ G+IR+WD  +A  +R+++G    A   S +F     FV S
Sbjct: 65  PVESVRLNTPEELIVAGSQSGSIRVWDLEAAKILRTLMGHK--ANICSLDFHPYGEFVAS 122

Query: 127 CGKDSTVKLWEVSSGRLVKQYLGATHTQ----LRFQAVFNDTEEFVLSIDEPSNEIVIWD 182
             +D+ +KLW++     V +Y G  H+Q    LRF     D +    + D+  + + +WD
Sbjct: 123 GSQDTNIKLWDIRRKGCVFRYRG--HSQAVRCLRFSP---DGKWLASAADD--HTVKLWD 175

Query: 183 ALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFW 224
            LTA K+      H G    +E  P E    +  +DR++RFW
Sbjct: 176 -LTAGKMMSEFPGHTGPVNVVEFHPNEYLLASGSSDRTIRFW 216

Participates in a complex which severs microtubules in an ATP-dependent manner. May act to target the enzymatic subunit of this complex to sites of action such as the centrosome. Microtubule severing may promote rapid reorganization of cellular microtubule arrays and the release of microtubules from the centrosome following nucleation. Microtubule release from the mitotic spindle poles may allow depolymerization of the microtubule end proximal to the spindle pole, leading to poleward microtubule flux and poleward motion of chromosome. Microtubule release within the cell body of neurons may be required for their transport into neuronal processes by microtubule-dependent motor proteins. This transport is required for axonal growth.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	228
255547145	435	Cleavage stimulation factor 50 kDa subun	0.991	0.519	0.902	1e-122
297734082	484	unnamed protein product [Vitis vinifera]	1.0	0.471	0.859	1e-116
359490887	440	PREDICTED: cleavage stimulation factor s	1.0	0.518	0.859	1e-116
356519146	425	PREDICTED: cleavage stimulation factor s	1.0	0.536	0.837	1e-114
449439347	435	PREDICTED: LOW QUALITY PROTEIN: cleavage	1.0	0.524	0.824	1e-114
449486911	437	PREDICTED: LOW QUALITY PROTEIN: cleavage	1.0	0.521	0.820	1e-113
15239477	429	transducin/WD40 domain-containing protei	0.991	0.526	0.774	1e-104
10177317	425	cleavage stimulation factor subunit 1-li	0.991	0.531	0.774	1e-103
42573752	337	transducin/WD40 domain-containing protei	0.991	0.670	0.774	1e-103
297793653	429	transducin family protein [Arabidopsis l	0.991	0.526	0.774	1e-103

>gi|255547145|ref|XP_002514630.1| Cleavage stimulation factor 50 kDa subunit, putative [Ricinus communis] gi|223546234|gb|EEF47736.1| Cleavage stimulation factor 50 kDa subunit, putative [Ricinus communis]

 Score =  442 bits (1136), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 204/226 (90%), Positives = 218/226 (96%)

Query: 1   FFDFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVP 60
           FFDFSKATAK+AFRVIQDTHNVRSVSFHPSGDFLLAGTDH IAHLYDVNTFQCYLSANVP
Sbjct: 208 FFDFSKATAKKAFRVIQDTHNVRSVSFHPSGDFLLAGTDHQIAHLYDVNTFQCYLSANVP 267

Query: 61  EISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKD 120
           EI +NGAINQVRYSSTGGMYVTASKDGAIRLWDGV+ANC+RSIVGAHGTAE+TSA FTKD
Sbjct: 268 EIGMNGAINQVRYSSTGGMYVTASKDGAIRLWDGVTANCIRSIVGAHGTAESTSATFTKD 327

Query: 121 QRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVI 180
           QRFVLSCGKDS++KLWEV SGRLVKQY+GATHTQLR QAVFN+TEEFV+SIDEPSNEI+I
Sbjct: 328 QRFVLSCGKDSSIKLWEVGSGRLVKQYIGATHTQLRCQAVFNETEEFVISIDEPSNEIII 387

Query: 181 WDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKE 226
           WDALTAEKVA+W SNH GAPRWIEHSP EAAFI+CGTDRSVRFWK+
Sbjct: 388 WDALTAEKVARWPSNHNGAPRWIEHSPVEAAFISCGTDRSVRFWKD 433

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297734082|emb|CBI15329.3| unnamed protein product [Vitis vinifera]

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 196/228 (85%), Positives = 213/228 (93%)

Query: 1   FFDFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVP 60
           FFDFSK  AKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHP+AHLYDVNTFQCYLSANV 
Sbjct: 257 FFDFSKTVAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPVAHLYDVNTFQCYLSANVQ 316

Query: 61  EISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKD 120
           ++ ++ +INQVRYSS G MYVTASKDGAIRLWDGV+ANCVRSIVGAHGTAEATSA+FTKD
Sbjct: 317 DLGISASINQVRYSSNGDMYVTASKDGAIRLWDGVTANCVRSIVGAHGTAEATSASFTKD 376

Query: 121 QRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVI 180
           QRFVLSCGKDS+VKLWE+ SG+LVKQYLGA HTQLR QAVFN+TEEFVLSIDE SNEIV+
Sbjct: 377 QRFVLSCGKDSSVKLWEIGSGKLVKQYLGAAHTQLRCQAVFNETEEFVLSIDEQSNEIVV 436

Query: 181 WDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEIL 228
           WDALTAE VA+  SNHIGAPRW+EHSP EAAF++CGTDRSVRFWKEIL
Sbjct: 437 WDALTAEIVARLPSNHIGAPRWLEHSPTEAAFVSCGTDRSVRFWKEIL 484

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359490887|ref|XP_002265349.2| PREDICTED: cleavage stimulation factor subunit 1-like [Vitis vinifera]

 Score =  424 bits (1089), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 196/228 (85%), Positives = 213/228 (93%)

Query: 1   FFDFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVP 60
           FFDFSK  AKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHP+AHLYDVNTFQCYLSANV 
Sbjct: 213 FFDFSKTVAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPVAHLYDVNTFQCYLSANVQ 272

Query: 61  EISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKD 120
           ++ ++ +INQVRYSS G MYVTASKDGAIRLWDGV+ANCVRSIVGAHGTAEATSA+FTKD
Sbjct: 273 DLGISASINQVRYSSNGDMYVTASKDGAIRLWDGVTANCVRSIVGAHGTAEATSASFTKD 332

Query: 121 QRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVI 180
           QRFVLSCGKDS+VKLWE+ SG+LVKQYLGA HTQLR QAVFN+TEEFVLSIDE SNEIV+
Sbjct: 333 QRFVLSCGKDSSVKLWEIGSGKLVKQYLGAAHTQLRCQAVFNETEEFVLSIDEQSNEIVV 392

Query: 181 WDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEIL 228
           WDALTAE VA+  SNHIGAPRW+EHSP EAAF++CGTDRSVRFWKEIL
Sbjct: 393 WDALTAEIVARLPSNHIGAPRWLEHSPTEAAFVSCGTDRSVRFWKEIL 440

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356519146|ref|XP_003528235.1| PREDICTED: cleavage stimulation factor subunit 1-like [Glycine max]

 Score =  417 bits (1071), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 191/228 (83%), Positives = 208/228 (91%)

Query: 1   FFDFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVP 60
           FFD SK  AKRA+RVIQDTHNVRSVSFHPSGDFLLAGTDH I HLYD+NTFQCYLSAN+P
Sbjct: 198 FFDISKTNAKRAYRVIQDTHNVRSVSFHPSGDFLLAGTDHAIPHLYDINTFQCYLSANIP 257

Query: 61  EISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKD 120
           E S +GAINQ+RYS TG MYVTASKDGAIRLWDG++ANCVRSI  AHGTAEATSA FTKD
Sbjct: 258 ETSPSGAINQIRYSCTGSMYVTASKDGAIRLWDGITANCVRSITAAHGTAEATSAIFTKD 317

Query: 121 QRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVI 180
           QRFVLSCGKDST+KLWEV SGRLVKQYLGA HTQLR QA+FN+TEEF+LSIDE SNEIVI
Sbjct: 318 QRFVLSCGKDSTLKLWEVGSGRLVKQYLGAIHTQLRCQAIFNETEEFILSIDELSNEIVI 377

Query: 181 WDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEIL 228
           WDA+T EKVAKW SNH+GAPRW+EHSP E+AFI+CGTDRSVRFWKE +
Sbjct: 378 WDAMTTEKVAKWPSNHVGAPRWLEHSPIESAFISCGTDRSVRFWKETV 425

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449439347|ref|XP_004137447.1| PREDICTED: LOW QUALITY PROTEIN: cleavage stimulation factor subunit 1-like [Cucumis sativus]

 Score =  416 bits (1070), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 188/228 (82%), Positives = 211/228 (92%)

Query: 1   FFDFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVP 60
           FFDFSK TAK+AFRVIQDTHNVRS+S HPSGD+LLAGTDH I HLYDVNTFQC+LSANVP
Sbjct: 208 FFDFSKLTAKKAFRVIQDTHNVRSISLHPSGDYLLAGTDHQIPHLYDVNTFQCFLSANVP 267

Query: 61  EISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKD 120
           EI  NGAINQ+RYS+TG MYVTASKDGA+RLWDG+ A C+RSIV AHGTAEATSA FTKD
Sbjct: 268 EIGNNGAINQIRYSATGSMYVTASKDGAVRLWDGIGAKCIRSIVSAHGTAEATSAKFTKD 327

Query: 121 QRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVI 180
           +R+VLSCGKDS+VKLW+V +GRLVKQY+GATH QLR QAVFNDTEEFVLSIDEPSNEIVI
Sbjct: 328 ERYVLSCGKDSSVKLWDVGTGRLVKQYVGATHIQLRCQAVFNDTEEFVLSIDEPSNEIVI 387

Query: 181 WDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEIL 228
           WDALTAE+VA+W SNH+GAPRW+EHSP E+AFI+CGTD+S+RFWKE L
Sbjct: 388 WDALTAERVARWPSNHVGAPRWLEHSPTESAFISCGTDKSIRFWKESL 435

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449486911|ref|XP_004157439.1| PREDICTED: LOW QUALITY PROTEIN: cleavage stimulation factor subunit 1-like [Cucumis sativus]

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 187/228 (82%), Positives = 210/228 (92%)

Query: 1   FFDFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVP 60
           FFDFSK TAK+AFRVIQDTHNVRS+S HPSGD+LLAGTDH I HLYDVNTFQC+LSANVP
Sbjct: 210 FFDFSKLTAKKAFRVIQDTHNVRSISLHPSGDYLLAGTDHQIPHLYDVNTFQCFLSANVP 269

Query: 61  EISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKD 120
           EI  NGAINQ+RYS+TG MYVTASKDGA+RLWDG+ A C+RSIV AHGTAEATSA FTKD
Sbjct: 270 EIGNNGAINQIRYSATGSMYVTASKDGAVRLWDGIGAKCIRSIVSAHGTAEATSAKFTKD 329

Query: 121 QRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVI 180
           +R+VLSC KDS+VKLW+V +GRLVKQY+GATH QLR QAVFNDTEEFVLSIDEPSNEIVI
Sbjct: 330 ERYVLSCXKDSSVKLWDVGTGRLVKQYVGATHIQLRCQAVFNDTEEFVLSIDEPSNEIVI 389

Query: 181 WDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEIL 228
           WDALTAE+VA+W SNH+GAPRW+EHSP E+AFI+CGTD+S+RFWKE L
Sbjct: 390 WDALTAERVARWPSNHVGAPRWLEHSPTESAFISCGTDKSIRFWKESL 437

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15239477|ref|NP_200902.1| transducin/WD40 domain-containing protein [Arabidopsis thaliana] gi|21591635|gb|AAM64165.1|AF515696_1 cleavage stimulation factor 50 [Arabidopsis thaliana] gi|21536993|gb|AAM61334.1| cleavage stimulation factor 50K chain [Arabidopsis thaliana] gi|22531092|gb|AAM97050.1| cleavage stimulation factor 50K chain [Arabidopsis thaliana] gi|23197952|gb|AAN15503.1| cleavage stimulation factor 50K chain [Arabidopsis thaliana] gi|332010016|gb|AED97399.1| transducin/WD40 domain-containing protein [Arabidopsis thaliana]

 Score =  382 bits (981), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 175/226 (77%), Positives = 198/226 (87%)

Query: 1   FFDFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVP 60
           FFDFSK TAKRAF+V QDTHNVRS+SFHPSG+FLLAGTDHPI HLYDVNT+QC+L +N P
Sbjct: 202 FFDFSKTTAKRAFKVFQDTHNVRSISFHPSGEFLLAGTDHPIPHLYDVNTYQCFLPSNFP 261

Query: 61  EISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKD 120
           +  V+GAINQVRYSSTG +Y+TASKDGAIRL+DGVSA CVRSI  AHG +E TSA FTKD
Sbjct: 262 DSGVSGAINQVRYSSTGSIYITASKDGAIRLFDGVSAKCVRSIGNAHGKSEVTSAVFTKD 321

Query: 121 QRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVI 180
           QRFVLS GKDSTVKLWE+ SGR+VK+YLGA   +LR QA+FNDTEEFV+SIDE SNE+V 
Sbjct: 322 QRFVLSSGKDSTVKLWEIGSGRMVKEYLGAKRVKLRSQAIFNDTEEFVISIDEASNEVVT 381

Query: 181 WDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKE 226
           WDA TA+KVAKW SNH GAPRWIEHSP E+ F+TCG DRS+RFWKE
Sbjct: 382 WDARTADKVAKWPSNHNGAPRWIEHSPVESVFVTCGIDRSIRFWKE 427

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|10177317|dbj|BAB10643.1| cleavage stimulation factor subunit 1-like protein [Arabidopsis thaliana]

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 175/226 (77%), Positives = 198/226 (87%)

Query: 1   FFDFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVP 60
           FFDFSK TAKRAF+V QDTHNVRS+SFHPSG+FLLAGTDHPI HLYDVNT+QC+L +N P
Sbjct: 198 FFDFSKTTAKRAFKVFQDTHNVRSISFHPSGEFLLAGTDHPIPHLYDVNTYQCFLPSNFP 257

Query: 61  EISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKD 120
           +  V+GAINQVRYSSTG +Y+TASKDGAIRL+DGVSA CVRSI  AHG +E TSA FTKD
Sbjct: 258 DSGVSGAINQVRYSSTGSIYITASKDGAIRLFDGVSAKCVRSIGNAHGKSEVTSAVFTKD 317

Query: 121 QRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVI 180
           QRFVLS GKDSTVKLWE+ SGR+VK+YLGA   +LR QA+FNDTEEFV+SIDE SNE+V 
Sbjct: 318 QRFVLSSGKDSTVKLWEIGSGRMVKEYLGAKRVKLRSQAIFNDTEEFVISIDEASNEVVT 377

Query: 181 WDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKE 226
           WDA TA+KVAKW SNH GAPRWIEHSP E+ F+TCG DRS+RFWKE
Sbjct: 378 WDARTADKVAKWPSNHNGAPRWIEHSPVESVFVTCGIDRSIRFWKE 423

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42573752|ref|NP_974972.1| transducin/WD40 domain-containing protein [Arabidopsis thaliana] gi|332010017|gb|AED97400.1| transducin/WD40 domain-containing protein [Arabidopsis thaliana]

 Score =  380 bits (977), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 175/226 (77%), Positives = 198/226 (87%)

Query: 1   FFDFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVP 60
           FFDFSK TAKRAF+V QDTHNVRS+SFHPSG+FLLAGTDHPI HLYDVNT+QC+L +N P
Sbjct: 110 FFDFSKTTAKRAFKVFQDTHNVRSISFHPSGEFLLAGTDHPIPHLYDVNTYQCFLPSNFP 169

Query: 61  EISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKD 120
           +  V+GAINQVRYSSTG +Y+TASKDGAIRL+DGVSA CVRSI  AHG +E TSA FTKD
Sbjct: 170 DSGVSGAINQVRYSSTGSIYITASKDGAIRLFDGVSAKCVRSIGNAHGKSEVTSAVFTKD 229

Query: 121 QRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVI 180
           QRFVLS GKDSTVKLWE+ SGR+VK+YLGA   +LR QA+FNDTEEFV+SIDE SNE+V 
Sbjct: 230 QRFVLSSGKDSTVKLWEIGSGRMVKEYLGAKRVKLRSQAIFNDTEEFVISIDEASNEVVT 289

Query: 181 WDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKE 226
           WDA TA+KVAKW SNH GAPRWIEHSP E+ F+TCG DRS+RFWKE
Sbjct: 290 WDARTADKVAKWPSNHNGAPRWIEHSPVESVFVTCGIDRSIRFWKE 335

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297793653|ref|XP_002864711.1| transducin family protein [Arabidopsis lyrata subsp. lyrata] gi|297310546|gb|EFH40970.1| transducin family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  380 bits (976), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 175/226 (77%), Positives = 196/226 (86%)

Query: 1   FFDFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVP 60
           FFDFSK TAKRAF+V QD HNVRSVSFHPSG+FLLAGTDHPI HLYDVNT+QC+L +N P
Sbjct: 202 FFDFSKTTAKRAFKVFQDAHNVRSVSFHPSGEFLLAGTDHPIPHLYDVNTYQCFLPSNFP 261

Query: 61  EISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKD 120
           +  V+GAINQVRYSSTG +Y+TASKDGAIRL+DGVSA CVRSI  AHG +E TSA FTKD
Sbjct: 262 DSGVSGAINQVRYSSTGSIYITASKDGAIRLFDGVSAKCVRSISNAHGKSEVTSAVFTKD 321

Query: 121 QRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVI 180
           QRFVLS GKDSTVKLWE+ SGR+VK+YLGA   +LR QA+FNDTEEFV+SIDE SNE+V 
Sbjct: 322 QRFVLSSGKDSTVKLWEIGSGRMVKEYLGAKRIKLRSQAIFNDTEEFVISIDEASNEVVT 381

Query: 181 WDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKE 226
           WDA T +KVAKW SNH GAPRWIEHSP E+ F+TCGTDRSVR WKE
Sbjct: 382 WDARTGDKVAKWPSNHNGAPRWIEHSPDESVFVTCGTDRSVRLWKE 427

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	228
TAIR|locus:2173542	429	AT5G60940 "AT5G60940" [Arabido	0.991	0.526	0.774	1.1e-96
UNIPROTKB|Q05048	431	CSTF1 "Cleavage stimulation fa	0.973	0.515	0.504	5.3e-56
MGI|MGI:1914587	431	Cstf1 "cleavage stimulation fa	0.973	0.515	0.495	2.3e-55
RGD|1309267	431	Cstf1 "cleavage stimulation fa	0.973	0.515	0.495	2.3e-55
ZFIN|ZDB-GENE-030131-2958	431	cstf1 "cleavage stimulation fa	0.973	0.515	0.495	8e-53
DICTYBASE|DDB_G0278769	506	cstf1 "cleavage stimulation fa	0.978	0.440	0.398	2.3e-46
WB|WBGene00000773	430	cpf-1 [Caenorhabditis elegans	0.973	0.516	0.420	1.2e-44
FB|FBgn0039867	424	CstF-50 "CstF-50" [Drosophila	0.973	0.523	0.402	1.9e-44
TAIR|locus:2140215	333	WDR5b "AT4G02730" [Arabidopsis	0.881	0.603	0.246	1.5e-17
TAIR|locus:2097435	317	WDR5a "AT3G49660" [Arabidopsis	0.899	0.646	0.244	5.3e-17

TAIR|locus:2173542 AT5G60940 "AT5G60940" [Arabidopsis thaliana (taxid:3702)]

 Score = 961 (343.3 bits), Expect = 1.1e-96, P = 1.1e-96
 Identities = 175/226 (77%), Positives = 198/226 (87%)

Query:     1 FFDFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVP 60
             FFDFSK TAKRAF+V QDTHNVRS+SFHPSG+FLLAGTDHPI HLYDVNT+QC+L +N P
Sbjct:   202 FFDFSKTTAKRAFKVFQDTHNVRSISFHPSGEFLLAGTDHPIPHLYDVNTYQCFLPSNFP 261

Query:    61 EISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKD 120
             +  V+GAINQVRYSSTG +Y+TASKDGAIRL+DGVSA CVRSI  AHG +E TSA FTKD
Sbjct:   262 DSGVSGAINQVRYSSTGSIYITASKDGAIRLFDGVSAKCVRSIGNAHGKSEVTSAVFTKD 321

Query:   121 QRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVI 180
             QRFVLS GKDSTVKLWE+ SGR+VK+YLGA   +LR QA+FNDTEEFV+SIDE SNE+V 
Sbjct:   322 QRFVLSSGKDSTVKLWEIGSGRMVKEYLGAKRVKLRSQAIFNDTEEFVISIDEASNEVVT 381

Query:   181 WDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKE 226
             WDA TA+KVAKW SNH GAPRWIEHSP E+ F+TCG DRS+RFWKE
Sbjct:   382 WDARTADKVAKWPSNHNGAPRWIEHSPVESVFVTCGIDRSIRFWKE 427

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS

GO:0008150 "biological_process" evidence=ND

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS

UNIPROTKB|Q05048 CSTF1 "Cleavage stimulation factor subunit 1" [Homo sapiens (taxid:9606)]

 Score = 577 (208.2 bits), Expect = 5.3e-56, P = 5.3e-56
 Identities = 114/226 (50%), Positives = 148/226 (65%)

Query:     2 FDFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPE 61
             FD+SK +AKRAF+ IQ+   +RS+SFHPSGDF+L GT HP   LYD+NTFQC++S N P+
Sbjct:   200 FDYSKPSAKRAFKYIQEAEMLRSISFHPSGDFILVGTQHPTLRLYDINTFQCFVSCN-PQ 258

Query:    62 ISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQ 121
                  AI  V Y+S+  MYVT SKDG I+LWDGVS  C+ +   AH  AE  SA F+K+ 
Sbjct:   259 DQHTDAICSVNYNSSANMYVTGSKDGCIKLWDGVSNRCITTFEKAHDGAEVCSAIFSKNS 318

Query:   122 RFVLSCGKDSTVKLWEVSSGRLVKQYLGA--THTQL-RFQAVFNDTEEFVLSIDEPSNEI 178
             +++LS GKDS  KLWE+S+GR + +Y GA  +  Q+ R QAVFN TE++VL  DE +  +
Sbjct:   319 KYILSSGKDSVAKLWEISTGRTLVRYTGAGLSGRQVHRTQAVFNHTEDYVLLPDERTISL 378

Query:   179 VIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFW 224
               WD+ TAE+    S  H    R I HSP    F+TC  D   RFW
Sbjct:   379 CCWDSRTAERRNLLSLGHNNIVRCIVHSPTNPGFMTCSDDFRARFW 424

GO:0005515 "protein binding" evidence=IPI

GO:0003723 "RNA binding" evidence=TAS

GO:0005634 "nucleus" evidence=TAS

GO:0006378 "mRNA polyadenylation" evidence=TAS

GO:0006379 "mRNA cleavage" evidence=TAS

GO:0006396 "RNA processing" evidence=TAS

GO:0000398 "mRNA splicing, via spliceosome" evidence=TAS

GO:0005654 "nucleoplasm" evidence=TAS

GO:0006366 "transcription from RNA polymerase II promoter" evidence=TAS

GO:0006369 "termination of RNA polymerase II transcription" evidence=TAS

GO:0006397 "mRNA processing" evidence=TAS

GO:0008380 "RNA splicing" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0031124 "mRNA 3'-end processing" evidence=TAS

MGI|MGI:1914587 Cstf1 "cleavage stimulation factor, 3' pre-RNA, subunit 1" [Mus musculus (taxid:10090)]

 Score = 571 (206.1 bits), Expect = 2.3e-55, P = 2.3e-55
 Identities = 112/226 (49%), Positives = 147/226 (65%)

Query:     2 FDFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPE 61
             FD+SK +AKRAF+ IQ+   +RS+SFHPSGDF+L GT HP   LYD+NTFQC++S N P+
Sbjct:   200 FDYSKPSAKRAFKYIQEAEMLRSISFHPSGDFILVGTQHPTLRLYDINTFQCFVSCN-PQ 258

Query:    62 ISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQ 121
                  AI  V Y+ +  MYVT SKDG I+LWDGVS  C+ +   AH  AE  SA F+K+ 
Sbjct:   259 DQHTDAICSVNYNPSANMYVTGSKDGCIKLWDGVSNRCITTFEKAHDGAEVCSAIFSKNS 318

Query:   122 RFVLSCGKDSTVKLWEVSSGRLVKQYLGA--THTQL-RFQAVFNDTEEFVLSIDEPSNEI 178
             +++LS GKDS  KLWE+S+GR + +Y GA  +  Q+ R QAVFN TE+++L  DE +  +
Sbjct:   319 KYILSSGKDSVAKLWEISTGRTLVRYTGAGLSGRQVHRTQAVFNHTEDYILLPDERTISL 378

Query:   179 VIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFW 224
               WD+ TAE+    S  H    R I HSP    F+TC  D   RFW
Sbjct:   379 CCWDSRTAERRNLLSLGHNNIVRCIVHSPTNPGFMTCSDDFRARFW 424

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

RGD|1309267 Cstf1 "cleavage stimulation factor, 3' pre-RNA, subunit 1, 50kDa" [Rattus norvegicus (taxid:10116)]

 Score = 571 (206.1 bits), Expect = 2.3e-55, P = 2.3e-55
 Identities = 112/226 (49%), Positives = 147/226 (65%)

Query:     2 FDFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPE 61
             FD+SK +AKRAF+ IQ+   +RS+SFHPSGDF+L GT HP   LYD+NTFQC++S N P+
Sbjct:   200 FDYSKPSAKRAFKYIQEAEMLRSISFHPSGDFILVGTQHPTLRLYDINTFQCFVSCN-PQ 258

Query:    62 ISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQ 121
                  AI  V Y+ +  MYVT SKDG I+LWDGVS  C+ +   AH  AE  SA F+K+ 
Sbjct:   259 DQHTDAICSVNYNPSANMYVTGSKDGCIKLWDGVSNRCITTFEKAHDGAEVCSAIFSKNS 318

Query:   122 RFVLSCGKDSTVKLWEVSSGRLVKQYLGA--THTQL-RFQAVFNDTEEFVLSIDEPSNEI 178
             +++LS GKDS  KLWE+S+GR + +Y GA  +  Q+ R QAVFN TE+++L  DE +  +
Sbjct:   319 KYILSSGKDSVAKLWEISTGRTLVRYTGAGLSGRQVHRTQAVFNHTEDYILLPDERTISL 378

Query:   179 VIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFW 224
               WD+ TAE+    S  H    R I HSP    F+TC  D   RFW
Sbjct:   379 CCWDSRTAERRNLLSLGHNNIVRCIVHSPTNPGFMTCSDDFRARFW 424

GO:0005634 "nucleus" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

ZFIN|ZDB-GENE-030131-2958 cstf1 "cleavage stimulation factor, 3' pre-RNA, subunit 1" [Danio rerio (taxid:7955)]

 Score = 547 (197.6 bits), Expect = 8.0e-53, P = 8.0e-53
 Identities = 112/226 (49%), Positives = 143/226 (63%)

Query:     2 FDFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPE 61
             FD+SK +AKRAF+ +Q+   +RS+SFHPSGDFLL GT HP   LYDVNTFQC++S N P 
Sbjct:   200 FDYSKPSAKRAFKHVQEAEMLRSISFHPSGDFLLVGTQHPTLRLYDVNTFQCFVSCN-PL 258

Query:    62 ISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQ 121
                   I  V Y+ +   YVT SKDG+I+LWDGVS  CV +   AH  AE  SA F+K+ 
Sbjct:   259 DQHTDTICGVCYNPSANSYVTCSKDGSIKLWDGVSNRCVTTFDKAHEGAEVCSAVFSKNS 318

Query:   122 RFVLSCGKDSTVKLWEVSSGRLVKQYLGA--THTQL-RFQAVFNDTEEFVLSIDEPSNEI 178
             +++LS GKDS  KLWE+S+GR + +Y GA  +  Q  R Q VFN TE++VL  DE +  +
Sbjct:   319 KYILSTGKDSVAKLWEISTGRTLVKYTGAGLSGRQTHRTQGVFNHTEDYVLLPDERTISL 378

Query:   179 VIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFW 224
               WD+ TAE+    S  H    R I HSP    F+TC  D   RFW
Sbjct:   379 CCWDSRTAERKNLLSLGHNNIVRCIVHSPTNPGFMTCSDDFRARFW 424

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

DICTYBASE|DDB_G0278769 cstf1 "cleavage stimulation factor 50 kDa subunit" [Dictyostelium discoideum (taxid:44689)]

 Score = 486 (176.1 bits), Expect = 2.3e-46, P = 2.3e-46
 Identities = 92/231 (39%), Positives = 148/231 (64%)

Query:     1 FFDFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVP 60
             F+D+ K++ KR+F+ IQDTH +RS++FHP GD +LAGTDH +  LY+VNTFQ + +  + 
Sbjct:   255 FYDY-KSSLKRSFKYIQDTHGIRSINFHPCGDLILAGTDHQMIRLYNVNTFQSFTARKIN 313

Query:    61 EISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKD 120
             E   +G INQVR+S  G ++ + SKD  I++WD  + + + ++   HG  E T+   +++
Sbjct:   314 EHH-HGPINQVRFSLDGNIFASCSKDNTIKIWDSNNFSLISTLNSPHGGKEPTTVQISRN 372

Query:   121 QRFVLSCGKDSTVKLWEVSSGRLVKQY-LGATHT----QLRFQAVFNDTEEFVLSIDEPS 175
             Q+++LSCG+DS +KLWE++SGRL+     G   +    + R  A FN TE+++++ DE  
Sbjct:   373 QKYLLSCGRDSMIKLWEITSGRLIYSINTGVNQSGGQNKNRISATFNYTEDYIITNDEQP 432

Query:   176 NEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKE 226
             +  V++++ T E+V K +  H    R+I  SP E A +TC  D   RFW +
Sbjct:   433 SVAVVYNSRTKEQVQKLTG-HNNTVRYIAASPVENALMTCSLDHRGRFWTD 482

GO:0006396 "RNA processing" evidence=ISS

GO:0006379 "mRNA cleavage" evidence=ISS

GO:0006378 "mRNA polyadenylation" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0003723 "RNA binding" evidence=ISS

WB|WBGene00000773 cpf-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 470 (170.5 bits), Expect = 1.2e-44, P = 1.2e-44
 Identities = 95/226 (42%), Positives = 132/226 (58%)

Query:     2 FDFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPE 61
             FDFSK   K+A + + + + VR++S HP G+FLL  TDHP   LY++ T Q Y SAN P+
Sbjct:   197 FDFSKTAVKKAMKTLSEVYPVRALSCHPGGEFLLVATDHPTVRLYNIETAQAYASAN-PD 255

Query:    62 ISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQ 121
                  ++  V YS    +YVTASKDG +++WDGVS  CV +   AH  +   SA FTK+ 
Sbjct:   256 DQHTESVTDVHYSENARLYVTASKDGHVKIWDGVSNRCVETFKRAHDGSSICSAKFTKNG 315

Query:   122 RFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLR-F--QAVFNDTEEFVLSIDEPSNEI 178
             +++L+ G DS VKLWE+S+ R +  Y GA  T  + F   A FN  E++VL  DE S  +
Sbjct:   316 KYILTSGMDSIVKLWELSTNRCLIVYTGAGATGAQDFATNASFNHNEDYVLFPDEKSGSM 375

Query:   179 VIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFW 224
               WDA  +++    +  H  A R   HSP+  AF+T   D   RFW
Sbjct:   376 CSWDARNSDRKRLLALGHTSACRTFVHSPSMPAFMTGSDDHRARFW 421

GO:0002009 "morphogenesis of an epithelium" evidence=IMP

GO:0040011 "locomotion" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0009790 "embryo development" evidence=IMP

GO:0001703 "gastrulation with mouth forming first" evidence=IMP

GO:0040010 "positive regulation of growth rate" evidence=IMP

GO:0048477 "oogenesis" evidence=IMP

GO:0006898 "receptor-mediated endocytosis" evidence=IMP

GO:0040027 "negative regulation of vulval development" evidence=IMP

FB|FBgn0039867 CstF-50 "CstF-50" [Drosophila melanogaster (taxid:7227)]

 Score = 468 (169.8 bits), Expect = 1.9e-44, P = 1.9e-44
 Identities = 91/226 (40%), Positives = 135/226 (59%)

Query:     2 FDFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPE 61
             FD +K + K+A +V  D   V  +SFHP+GD++  GT+H +  +YDV T QC++SA +P 
Sbjct:   193 FDIAKPSVKKAHKVFTDCEPVLCLSFHPTGDYVAIGTEHNVLRVYDVATTQCFVSA-IPS 251

Query:    62 ISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQ 121
                   +  V+YS TG +Y T S DG I++WDG+S  C+ +I  AHG A   S  FT++ 
Sbjct:   252 QQHKAGVTCVKYSPTGKLYATGSYDGDIKIWDGISGRCINTIAEAHGGAAICSLEFTRNG 311

Query:   122 RFVLSCGKDSTVKLWEVSSGRLVKQYLGATHT---QLRFQAVFNDTEEFVLSIDEPSNEI 178
             +++LS G DS V LWE+ + R ++ Y GA  T   + + +AVFN TE++VL  DE +  +
Sbjct:   312 KYLLSSGMDSLVYLWELCTSRPIQTYTGAGTTGKQEHQTEAVFNHTEDYVLFPDEATTSL 371

Query:   179 VIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFW 224
               W++    ++   S  H G  R+I HSP   AF+TC  D   RFW
Sbjct:   372 CSWNSRNGCRLTLNSLGHNGPVRYITHSPNGPAFLTCSDDFRARFW 417

GO:0005848 "mRNA cleavage stimulating factor complex" evidence=ISS

GO:0006379 "mRNA cleavage" evidence=ISS

GO:0005654 "nucleoplasm" evidence=IDA

TAIR|locus:2140215 WDR5b "AT4G02730" [Arabidopsis thaliana (taxid:3702)]

 Score = 215 (80.7 bits), Expect = 1.5e-17, P = 1.5e-17
 Identities = 52/211 (24%), Positives = 106/211 (50%)

Query:    19 THNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGG 78
             T+ V  V+F+P  + +++G+      +++V T +C        +     I+ V ++  G 
Sbjct:   128 TNFVFCVNFNPPSNLIVSGSFDETIRIWEVKTGKCVRMIKAHSMP----ISSVHFNRDGS 183

Query:    79 MYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEV 138
             + V+AS DG+ ++WD     C+++++     A  + A F+ + +F+L    DST+KL   
Sbjct:   184 LIVSASHDGSCKIWDAKEGTCLKTLIDDKSPA-VSFAKFSPNGKFILVATLDSTLKLSNY 242

Query:   139 SSGRLVKQYLGATHTQLRFQAVFNDTE-EFVLSIDEPSNEIVIWDALTAEKVAKWSSNHI 197
             ++G+ +K Y G T+      + F+ T  ++++S  E  N + +WD L A  + +    H 
Sbjct:   243 ATGKFLKVYTGHTNKVFCITSAFSVTNGKYIVSGSE-DNCVYLWD-LQARNILQRLEGHT 300

Query:   198 GAPRWIEHSPAEAAFITCGT--DRSVRFWKE 226
              A   +   P +    + G   D+++R WK+
Sbjct:   301 DAVISVSCHPVQNEISSSGNHLDKTIRIWKQ 331

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS

GO:0008150 "biological_process" evidence=ND

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS

TAIR|locus:2097435 WDR5a "AT3G49660" [Arabidopsis thaliana (taxid:3702)]

 Score = 209 (78.6 bits), Expect = 5.3e-17, P = 5.3e-17
 Identities = 52/213 (24%), Positives = 107/213 (50%)

Query:    15 VIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYS 74
             +I  T+    V+F+P  + +++G+      ++DV T +C L   +P  S    +  V ++
Sbjct:   109 LIGHTNYAFCVNFNPQSNMIVSGSFDETVRIWDVTTGKC-LKV-LPAHS--DPVTAVDFN 164

Query:    75 STGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVK 134
               G + V++S DG  R+WD  + +CV++++        +   F+ + +F+L    D+T++
Sbjct:   165 RDGSLIVSSSYDGLCRIWDSGTGHCVKTLIDDENPP-VSFVRFSPNGKFILVGTLDNTLR 223

Query:   135 LWEVSSGRLVKQYLGATHTQLRFQAVFNDTE-EFVLSIDEPSNEIVIWDALTAEKVAKWS 193
             LW +SS + +K Y G  + Q    + F+ T  + ++S  E  N + +W+ L ++K+ +  
Sbjct:   224 LWNISSAKFLKTYTGHVNAQYCISSAFSVTNGKRIVSGSE-DNCVHMWE-LNSKKLLQKL 281

Query:   194 SNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKE 226
               H      +   P E    +   D++VR W +
Sbjct:   282 EGHTETVMNVACHPTENLIASGSLDKTVRIWTQ 314

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0005834 "heterotrimeric G-protein complex" evidence=ISS

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=ISS

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=IMP

GO:0042393 "histone binding" evidence=IDA

GO:0048188 "Set1C/COMPASS complex" evidence=IPI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	228
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-27
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	5e-23
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	3e-14
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-13
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	3e-12
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	7e-11
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	6e-09
smart00320	40	smart00320, WD40, WD40 repeats	0.002

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  106 bits (266), Expect = 1e-27
 Identities = 61/224 (27%), Positives = 97/224 (43%), Gaps = 14/224 (6%)

Query: 4   FSKATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEIS 63
           +   T +    +   T  V SV+F P G  L + +      ++DV T +C  +       
Sbjct: 78  WDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLR----G 133

Query: 64  VNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRF 123
               +N V +S  G    ++S+DG I+LWD  +  CV ++ G H T E  S  F+ D   
Sbjct: 134 HTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTG-H-TGEVNSVAFSPDGEK 191

Query: 124 VLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDA 183
           +LS   D T+KLW++S+G+ +    G  H        F+     + S  E    I +WD 
Sbjct: 192 LLSSSSDGTIKLWDLSTGKCLGTLRG--HENGVNSVAFSPDGYLLASGSEDGT-IRVWDL 248

Query: 184 LTAEKVAKWS--SNHIGAPRWIEHSPAEAAFITCGTDRSVRFWK 225
            T E V   S  +N + +  W   SP      +   D ++R W 
Sbjct: 249 RTGECVQTLSGHTNSVTSLAW---SPDGKRLASGSADGTIRIWD 289

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 93.9 bits (234), Expect = 5e-23
 Identities = 57/206 (27%), Positives = 92/206 (44%), Gaps = 10/206 (4%)

Query: 19  THNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGG 78
           T  V  V+F P G  L  G+      ++D+ T +   +       V      V  S+ G 
Sbjct: 9   TGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRD----VAASADGT 64

Query: 79  MYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEV 138
              + S D  IRLWD  +  CVR++ G H T+  +S  F+ D R + S  +D T+K+W+V
Sbjct: 65  YLASGSSDKTIRLWDLETGECVRTLTG-H-TSYVSSVAFSPDGRILSSSSRDKTIKVWDV 122

Query: 139 SSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIG 198
            +G+ +    G  HT       F+    FV S  +    I +WD  T + VA  +  H G
Sbjct: 123 ETGKCLTTLRG--HTDWVNSVAFSPDGTFVASSSQ-DGTIKLWDLRTGKCVATLTG-HTG 178

Query: 199 APRWIEHSPAEAAFITCGTDRSVRFW 224
               +  SP     ++  +D +++ W
Sbjct: 179 EVNSVAFSPDGEKLLSSSSDGTIKLW 204

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 70.9 bits (172), Expect = 3e-14
 Identities = 46/223 (20%), Positives = 89/223 (39%), Gaps = 9/223 (4%)

Query: 4   FSKATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEIS 63
           +  +T K     +    +    SF P G  L +G+      L+D+ +    L        
Sbjct: 226 WDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGH-- 283

Query: 64  VNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKD-QR 122
            + ++  V +S  G +  + S DG +RLWD  +   + S+         +S +F+ D   
Sbjct: 284 -SSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSL 342

Query: 123 FVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWD 182
            V     D T++LW++ +G+ +K   G  H+ +   +   D    V+S       + +WD
Sbjct: 343 LVSGGSDDGTIRLWDLRTGKPLKTLEG--HSNVLSVSFSPD--GRVVSSGSTDGTVRLWD 398

Query: 183 ALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWK 225
             T   +      H      ++ SP   +  +  +D ++R W 
Sbjct: 399 LSTGSLLRN-LDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWD 440

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 68.6 bits (166), Expect = 2e-13
 Identities = 50/207 (24%), Positives = 87/207 (42%), Gaps = 12/207 (5%)

Query: 22  VRSVSFHPSGDFLLAGTDH-PIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMY 80
           V S++F P G  L+A         L+D++T +   S        +  ++    S  G + 
Sbjct: 201 VSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTL--SGHSDSVVSSF--SPDGSLL 256

Query: 81  VTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSS 140
            + S DG IRLWD  S++ +   +  H ++   S  F+ D + + S   D TV+LW++ +
Sbjct: 257 ASGSSDGTIRLWDLRSSSSLLRTLSGH-SSSVLSVAFSPDGKLLASGSSDGTVRLWDLET 315

Query: 141 GRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWS--SNHIG 198
           G+L+       H        F+     ++S       I +WD  T + +      SN + 
Sbjct: 316 GKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVLS 375

Query: 199 APRWIEHSPAEAAFITCGTDRSVRFWK 225
               +  SP      +  TD +VR W 
Sbjct: 376 ----VSFSPDGRVVSSGSTDGTVRLWD 398

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 64.7 bits (156), Expect = 3e-12
 Identities = 42/207 (20%), Positives = 90/207 (43%), Gaps = 8/207 (3%)

Query: 22  VRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYV 81
           + S++F P G+ LL+G+      L+D++  +  + +   E   + +++++  SS  G  +
Sbjct: 68  ITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSL--EGLHDSSVSKLALSSPDGNSI 125

Query: 82  ---TASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEV 138
              ++S DG ++LWD  +   +   +  H  +  + A     +        D T+KLW++
Sbjct: 126 LLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDL 185

Query: 139 SSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIG 198
            +G+ +    G  HT       F+     +++       I +WD  T + +    S H  
Sbjct: 186 RTGKPLSTLAG--HTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSD 243

Query: 199 APRWIEHSPAEAAFITCGTDRSVRFWK 225
           +      SP  +   +  +D ++R W 
Sbjct: 244 SV-VSSFSPDGSLLASGSSDGTIRLWD 269

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 60.9 bits (146), Expect = 7e-11
 Identities = 41/230 (17%), Positives = 94/230 (40%), Gaps = 6/230 (2%)

Query: 1   FFDFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVP 60
             D S  +++   ++++ +    S++         + +   +  L   +       +++ 
Sbjct: 1   LVDNSSTSSENKSKLLKKSELGPSLNSLSLLSLGSSESGILLLALLSDSLVSLPDLSSLL 60

Query: 61  EISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSAN-CVRSIVGAHGTAEATSANFTK 119
                 +I  + +S  G + ++ S DG I+LWD  +    ++S+ G H ++ +  A  + 
Sbjct: 61  LRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSP 120

Query: 120 DQRFVLSCGK--DSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNE 177
           D   +L      D TVKLW++S+   + + L   H++      F+   + + S       
Sbjct: 121 DGNSILLASSSLDGTVKLWDLSTPGKLIRTL-EGHSESVTSLAFSPDGKLLASGSSLDGT 179

Query: 178 IVIWDALTAEKVAKWSSNHIGAPRWIEHSP-AEAAFITCGTDRSVRFWKE 226
           I +WD  T + ++   + H      +  SP       +  +D ++R W  
Sbjct: 180 IKLWDLRTGKPLST-LAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDL 228

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 55.1 bits (131), Expect = 6e-09
 Identities = 34/147 (23%), Positives = 66/147 (44%), Gaps = 8/147 (5%)

Query: 1   FFDFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLLAG-TDHPIAHLYDVNTFQCYLSANV 59
            +D        +  +      V S+SF P G  L++G +D     L+D+ T +       
Sbjct: 310 LWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLK---- 365

Query: 60  PEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTK 119
             +  +  +  V +S  G +  + S DG +RLWD  + + +R++ G       TS +F+ 
Sbjct: 366 -TLEGHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTS--RVTSLDFSP 422

Query: 120 DQRFVLSCGKDSTVKLWEVSSGRLVKQ 146
           D + + S   D+T++LW++ +      
Sbjct: 423 DGKSLASGSSDNTIRLWDLKTSLKSVS 449

Length = 466

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 34.6 bits (80), Expect = 0.002
 Identities = 11/29 (37%), Positives = 15/29 (51%)

Query: 65 NGAINQVRYSSTGGMYVTASKDGAIRLWD 93
           G +  V +S  G    + S DG I+LWD
Sbjct: 12 TGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	228
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
PTZ00421	493	coronin; Provisional	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0640	430	consensus mRNA cleavage stimulating factor complex	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0293	519	consensus WD40 repeat-containing protein [Function	100.0
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
PTZ00420	568	coronin; Provisional	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0278	334	consensus Serine/threonine kinase receptor-associa	100.0
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
KOG0316	307	consensus Conserved WD40 repeat-containing protein	100.0
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	100.0
KOG0640	430	consensus mRNA cleavage stimulating factor complex	100.0
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	100.0
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	100.0
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	100.0
KOG0643	327	consensus Translation initiation factor 3, subunit	100.0
KOG0294	362	consensus WD40 repeat-containing protein [Function	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
KOG0310	487	consensus Conserved WD40 repeat-containing protein	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0643	327	consensus Translation initiation factor 3, subunit	100.0
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0275	508	consensus Conserved WD40 repeat-containing protein	100.0
KOG0275	508	consensus Conserved WD40 repeat-containing protein	100.0
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.98
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.98
PTZ00421	493	coronin; Provisional	99.98
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.97
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.97
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.97
KOG0289	506	consensus mRNA splicing factor [General function p	99.97
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.97
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.97
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.97
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.97
KOG0296	399	consensus Angio-associated migratory cell protein	99.97
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.97
KOG0289	506	consensus mRNA splicing factor [General function p	99.97
PTZ00420	568	coronin; Provisional	99.97
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.97
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.97
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.97
KOG0646	476	consensus WD40 repeat protein [General function pr	99.97
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.97
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.97
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.97
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.97
KOG0641	350	consensus WD40 repeat protein [General function pr	99.97
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.97
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.96
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.96
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.96
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.96
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.96
KOG2096	420	consensus WD40 repeat protein [General function pr	99.96
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.96
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.96
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.96
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.96
KOG0639	705	consensus Transducin-like enhancer of split protei	99.96
KOG0267	825	consensus Microtubule severing protein katanin p80	99.96
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.96
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.96
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.96
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.95
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.95
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.95
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.95
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.95
KOG0267	825	consensus Microtubule severing protein katanin p80	99.95
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.95
KOG4328	498	consensus WD40 protein [Function unknown]	99.95
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.95
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.95
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.95
KOG0639	705	consensus Transducin-like enhancer of split protei	99.95
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.94
KOG1274	933	consensus WD40 repeat protein [General function pr	99.94
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.94
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.94
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.94
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.94
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.94
KOG1273	405	consensus WD40 repeat protein [General function pr	99.94
KOG1539	910	consensus WD repeat protein [General function pred	99.94
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.94
KOG2048	691	consensus WD40 repeat protein [General function pr	99.94
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.94
KOG2055	514	consensus WD40 repeat protein [General function pr	99.94
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.93
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.93
KOG2055	514	consensus WD40 repeat protein [General function pr	99.93
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.93
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.93
KOG1273	405	consensus WD40 repeat protein [General function pr	99.93
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.93
KOG2096	420	consensus WD40 repeat protein [General function pr	99.92
KOG2048	691	consensus WD40 repeat protein [General function pr	99.92
KOG1539	910	consensus WD repeat protein [General function pred	99.92
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.92
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.92
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.92
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.92
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.92
KOG4328	498	consensus WD40 protein [Function unknown]	99.91
KOG0646	476	consensus WD40 repeat protein [General function pr	99.91
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.91
KOG1274	933	consensus WD40 repeat protein [General function pr	99.91
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.91
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.91
KOG0641	350	consensus WD40 repeat protein [General function pr	99.91
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.91
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.91
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.91
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.91
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.91
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.91
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.9
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.9
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.9
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.9
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.9
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.9
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.9
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.89
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.89
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.89
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.87
KOG1188	376	consensus WD40 repeat protein [General function pr	99.87
PRK11028	330	6-phosphogluconolactonase; Provisional	99.87
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.87
KOG1188	376	consensus WD40 repeat protein [General function pr	99.87
PRK01742	429	tolB translocation protein TolB; Provisional	99.87
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.87
KOG0649	325	consensus WD40 repeat protein [General function pr	99.87
PRK11028	330	6-phosphogluconolactonase; Provisional	99.87
KOG4227	609	consensus WD40 repeat protein [General function pr	99.86
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.86
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.85
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.85
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.85
COG2319	466	FOG: WD40 repeat [General function prediction only	99.85
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.85
KOG1310	758	consensus WD40 repeat protein [General function pr	99.84
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.83
KOG0649	325	consensus WD40 repeat protein [General function pr	99.83
COG2319	466	FOG: WD40 repeat [General function prediction only	99.83
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.83
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.83
PRK03629	429	tolB translocation protein TolB; Provisional	99.82
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.82
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.82
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.82
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.82
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.81
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.81
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.81
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.81
PRK04922	433	tolB translocation protein TolB; Provisional	99.8
PRK05137	435	tolB translocation protein TolB; Provisional	99.8
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.8
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.8
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.8
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.8
KOG2139	445	consensus WD40 repeat protein [General function pr	99.79
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.78
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.78
PRK02889	427	tolB translocation protein TolB; Provisional	99.78
KOG1963	792	consensus WD40 repeat protein [General function pr	99.78
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.77
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.77
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.77
KOG2139	445	consensus WD40 repeat protein [General function pr	99.76
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.75
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.74
PRK00178	430	tolB translocation protein TolB; Provisional	99.74
KOG1310	758	consensus WD40 repeat protein [General function pr	99.73
KOG4547	541	consensus WD40 repeat-containing protein [General	99.73
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.73
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.73
KOG4227	609	consensus WD40 repeat protein [General function pr	99.72
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.72
PRK01742	429	tolB translocation protein TolB; Provisional	99.71
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.71
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.71
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.71
KOG2321	703	consensus WD40 repeat protein [General function pr	99.7
KOG2321	703	consensus WD40 repeat protein [General function pr	99.7
PRK04792	448	tolB translocation protein TolB; Provisional	99.69
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.69
KOG1334	559	consensus WD40 repeat protein [General function pr	99.68
KOG1963	792	consensus WD40 repeat protein [General function pr	99.68
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.66
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.66
PRK03629	429	tolB translocation protein TolB; Provisional	99.66
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.66
PRK05137	435	tolB translocation protein TolB; Provisional	99.65
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.65
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.65
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.64
PRK01029	428	tolB translocation protein TolB; Provisional	99.64
PRK02889	427	tolB translocation protein TolB; Provisional	99.64
PRK04922	433	tolB translocation protein TolB; Provisional	99.64
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.6
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.59
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.59
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.58
KOG2315	566	consensus Predicted translation initiation factor	99.58
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.56
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.53
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.53
KOG4547	541	consensus WD40 repeat-containing protein [General	99.52
COG4946	668	Uncharacterized protein related to the periplasmic	99.51
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.51
PRK00178	430	tolB translocation protein TolB; Provisional	99.49
PRK01029	428	tolB translocation protein TolB; Provisional	99.48
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.47
PRK04043	419	tolB translocation protein TolB; Provisional	99.47
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.47
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	99.46
PRK04792	448	tolB translocation protein TolB; Provisional	99.46
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	99.46
KOG4714	319	consensus Nucleoporin [Nuclear structure]	99.44
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.44
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.41
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.4
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.4
KOG2695	425	consensus WD40 repeat protein [General function pr	99.4
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	99.4
KOG4532	344	consensus WD40-like repeat containing protein [Gen	99.4
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.39
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.38
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.37
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	99.36
COG4946	668	Uncharacterized protein related to the periplasmic	99.35
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	99.34
KOG2315	566	consensus Predicted translation initiation factor	99.33
KOG1334	559	consensus WD40 repeat protein [General function pr	99.32
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	99.29
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	99.29
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	99.29
KOG2695	425	consensus WD40 repeat protein [General function pr	99.28
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	99.27
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	99.27
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	99.23
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.22
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.2
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	99.2
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.18
KOG4532	344	consensus WD40-like repeat containing protein [Gen	99.18
KOG2314	698	consensus Translation initiation factor 3, subunit	99.18
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	99.18
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.17
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	99.16
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	99.14
PRK04043	419	tolB translocation protein TolB; Provisional	99.14
KOG4714	319	consensus Nucleoporin [Nuclear structure]	99.12
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.11
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	99.11
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	99.11
KOG2314	698	consensus Translation initiation factor 3, subunit	99.08
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	99.05
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	99.03
KOG1912	1062	consensus WD40 repeat protein [General function pr	99.02
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.0
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	99.0
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.99
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.99
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.98
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.98
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.97
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.96
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.96
KOG2041	1189	consensus WD40 repeat protein [General function pr	98.95
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.92
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.9
PRK02888	635	nitrous-oxide reductase; Validated	98.89
KOG1008	783	consensus Uncharacterized conserved protein, conta	98.89
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.87
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	98.8
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.79
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	98.76
PRK02888	635	nitrous-oxide reductase; Validated	98.74
COG3391	381	Uncharacterized conserved protein [Function unknow	98.74
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.72
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.71
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	98.71
KOG1912	1062	consensus WD40 repeat protein [General function pr	98.67
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.66
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.65
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	98.64
KOG3621	726	consensus WD40 repeat-containing protein [General	98.62
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	98.59
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	98.59
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	98.57
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.56
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.55
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.54
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	98.49
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.49
KOG1008	783	consensus Uncharacterized conserved protein, conta	98.48
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	98.4
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	98.37
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	98.37
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	98.36
COG3391	381	Uncharacterized conserved protein [Function unknow	98.35
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.35
PRK13616	591	lipoprotein LpqB; Provisional	98.33
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	98.33
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	98.31
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	98.3
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	98.28
KOG3621	726	consensus WD40 repeat-containing protein [General	98.28
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	98.27
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	98.24
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	98.23
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	98.21
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	98.2
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	98.19
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	98.17
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	98.15
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	98.13
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	98.07
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	98.06
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	98.05
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	98.05
KOG2444	238	consensus WD40 repeat protein [General function pr	98.04
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	98.01
KOG2395	644	consensus Protein involved in vacuole import and d	97.98
KOG2395	644	consensus Protein involved in vacuole import and d	97.92
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	97.91
PHA02713	557	hypothetical protein; Provisional	97.9
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.88
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.87
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	97.87
PRK13616	591	lipoprotein LpqB; Provisional	97.86
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	97.86
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	97.86
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.86
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	97.8
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	97.76
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	97.74
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	97.7
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.66
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	97.63
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	97.61
KOG2444	238	consensus WD40 repeat protein [General function pr	97.52
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	97.5
PHA03098	534	kelch-like protein; Provisional	97.39
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	97.38
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	97.36
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	97.34
PHA02713	557	hypothetical protein; Provisional	97.32
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	97.28
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	97.25
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	97.13
PRK10115	686	protease 2; Provisional	97.12
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	97.12
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	97.11
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	97.11
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	97.1
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	97.1
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	97.09
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	97.05
PHA03098	534	kelch-like protein; Provisional	97.04
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	97.02
COG5276	370	Uncharacterized conserved protein [Function unknow	97.01
COG5167	776	VID27 Protein involved in vacuole import and degra	96.97
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	96.92
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	96.91
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	96.73
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	96.73
PHA02790	480	Kelch-like protein; Provisional	96.66
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	96.65
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	96.64
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	96.56
KOG2377	657	consensus Uncharacterized conserved protein [Funct	96.56
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	96.51
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	96.47
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	96.44
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	96.4
PRK13684	334	Ycf48-like protein; Provisional	96.37
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	96.36
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	96.34
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	96.34
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	96.33
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	96.25
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	96.18
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	96.16
PF14727	418	PHTB1_N: PTHB1 N-terminus	96.13
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	96.07
COG5276	370	Uncharacterized conserved protein [Function unknow	96.06
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	96.05
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	96.05
KOG2377	657	consensus Uncharacterized conserved protein [Funct	96.04
PHA02790	480	Kelch-like protein; Provisional	95.91
PRK10115	686	protease 2; Provisional	95.91
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	95.87
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	95.84
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	95.76
COG4590	733	ABC-type uncharacterized transport system, permeas	95.62
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	95.61
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	95.54
PF13449	326	Phytase-like: Esterase-like activity of phytase	95.46
KOG2247	615	consensus WD40 repeat-containing protein [General	95.44
PRK13684	334	Ycf48-like protein; Provisional	95.4
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	95.34
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	95.32
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	95.29
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	95.29
PLN00033	398	photosystem II stability/assembly factor; Provisio	95.16
KOG2247	615	consensus WD40 repeat-containing protein [General	95.08
COG5167	776	VID27 Protein involved in vacuole import and degra	95.06
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	95.06
KOG1983	993	consensus Tomosyn and related SNARE-interacting pr	94.98
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	94.95
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	94.88
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	94.87
KOG1898	1205	consensus Splicing factor 3b, subunit 3 [RNA proce	94.86
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	94.81
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	94.76
PLN00033	398	photosystem II stability/assembly factor; Provisio	94.37
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	94.34
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	94.29
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	94.14
TIGR03032	335	conserved hypothetical protein TIGR03032. This pro	94.12
KOG3616	1636	consensus Selective LIM binding factor [Transcript	94.12
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	94.05
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	93.81
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	93.78
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	93.6
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	93.5
PLN02193	470	nitrile-specifier protein	93.25
PF10395	670	Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an	93.18
PLN02193	470	nitrile-specifier protein	92.94
PLN02153	341	epithiospecifier protein	92.84
COG5290	1243	IkappaB kinase complex, IKAP component [Transcript	92.77
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	92.7
KOG3616	1636	consensus Selective LIM binding factor [Transcript	92.48
PF12768	281	Rax2: Cortical protein marker for cell polarity	92.13
PF13449	326	Phytase-like: Esterase-like activity of phytase	92.05
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	91.9
PLN02153	341	epithiospecifier protein	91.86
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	91.49
KOG1898	1205	consensus Splicing factor 3b, subunit 3 [RNA proce	91.39
PF14727	418	PHTB1_N: PTHB1 N-terminus	91.33
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	91.11
KOG1896	1366	consensus mRNA cleavage and polyadenylation factor	90.87
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	90.27
PF10395	670	Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an	89.98
smart00564	33	PQQ beta-propeller repeat. Beta-propeller repeat o	89.41
PF01011	38	PQQ: PQQ enzyme repeat family.; InterPro: IPR00237	89.32
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	89.18
KOG0379	482	consensus Kelch repeat-containing proteins [Genera	89.14
PF14779	257	BBS1: Ciliary BBSome complex subunit 1	89.07
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	88.26
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	88.07
KOG3522	925	consensus Predicted guanine nucleotide exchange fa	87.77
PF08801	422	Nucleoporin_N: Nup133 N terminal like; InterPro: I	87.38
COG1520	370	FOG: WD40-like repeat [Function unknown]	87.3
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	87.27

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=7.6e-43  Score=262.50  Aligned_cols=208  Identities=25%  Similarity=0.447  Sum_probs=194.4

Q ss_pred             ceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeE
Q 040370           10 KRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAI   89 (228)
Q Consensus        10 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v   89 (228)
                      ....++.+|.++|..+.|+|+.++|+++++|+++++|.+.+..+....+.   | ..+|.++.|+|.|-+|||++.|++-
T Consensus       442 ~~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~G---H-~~PVwdV~F~P~GyYFatas~D~tA  517 (707)
T KOG0263|consen  442 GTSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKG---H-LAPVWDVQFAPRGYYFATASHDQTA  517 (707)
T ss_pred             ceeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecC---C-CcceeeEEecCCceEEEecCCCcee
Confidence            34455789999999999999999999999999999999999988877763   3 8899999999999999999999999


Q ss_pred             EEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEE
Q 040370           90 RLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVL  169 (228)
Q Consensus        90 ~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (228)
                      ++|......+.+.+.+|  -..|.|+.|+|+..|+++|+.|.++++||+.+|..++.|.+  |...+.+++|+|+|++++
T Consensus       518 rLWs~d~~~PlRifagh--lsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~G--H~~~V~al~~Sp~Gr~La  593 (707)
T KOG0263|consen  518 RLWSTDHNKPLRIFAGH--LSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTG--HKGPVTALAFSPCGRYLA  593 (707)
T ss_pred             eeeecccCCchhhhccc--ccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecC--CCCceEEEEEcCCCceEe
Confidence            99999999999999887  77899999999999999999999999999999999999988  889999999999999999


Q ss_pred             EeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370          170 SIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEI  227 (228)
Q Consensus       170 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~  227 (228)
                      +++. |+.|.+||+.+++.+..+ .+|.+.|.++.|+.+|..||+||.|..|++||+.
T Consensus       594 Sg~e-d~~I~iWDl~~~~~v~~l-~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~  649 (707)
T KOG0263|consen  594 SGDE-DGLIKIWDLANGSLVKQL-KGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLT  649 (707)
T ss_pred             eccc-CCcEEEEEcCCCcchhhh-hcccCceeEEEEecCCCEEEecCCCCeEEEEEch
Confidence            8666 899999999999999988 7899999999999999999999999999999974

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=1e-43  Score=250.40  Aligned_cols=214  Identities=22%  Similarity=0.382  Sum_probs=192.4

Q ss_pred             CCcCCccccceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeE
Q 040370            1 FFDFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMY   80 (228)
Q Consensus         1 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l   80 (228)
                      +|+++..  .++..+.+|...|..++|+|+|++|++++.|.+-++||++++.....   .++| ...|.+++|+|+|.++
T Consensus       245 lw~~~~e--~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~---QEGH-s~~v~~iaf~~DGSL~  318 (459)
T KOG0272|consen  245 LWKLSQE--TPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLL---QEGH-SKGVFSIAFQPDGSLA  318 (459)
T ss_pred             eeccCCC--cchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHh---hccc-ccccceeEecCCCcee
Confidence            4666633  45666778999999999999999999999999999999999765432   2344 8999999999999999


Q ss_pred             EEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEE
Q 040370           81 VTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAV  160 (228)
Q Consensus        81 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~  160 (228)
                      +||+.|..-+|||+++++++..+.+|  ..+|.+++|+|+|..|+||+.|++++|||++..+.+.++..  |...+..+.
T Consensus       319 ~tGGlD~~~RvWDlRtgr~im~L~gH--~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipA--H~nlVS~Vk  394 (459)
T KOG0272|consen  319 ATGGLDSLGRVWDLRTGRCIMFLAGH--IKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPA--HSNLVSQVK  394 (459)
T ss_pred             eccCccchhheeecccCcEEEEeccc--ccceeeEeECCCceEEeecCCCCcEEEeeecccccceeccc--ccchhhheE
Confidence            99999999999999999999999886  88999999999999999999999999999999888887766  888999999


Q ss_pred             ECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEee
Q 040370          161 FNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWK  225 (228)
Q Consensus       161 ~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd  225 (228)
                      |.|...+++++++.|+++++|..++..++..+ .+|.+.|.++..+|++++++|++.|.++++|.
T Consensus       395 ~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksL-aGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  395 YSPQEGYFLVTASYDNTVKIWSTRTWSPLKSL-AGHEGKVISLDISPDSQAIATSSFDRTIKLWR  458 (459)
T ss_pred             ecccCCeEEEEcccCcceeeecCCCcccchhh-cCCccceEEEEeccCCceEEEeccCceeeecc
Confidence            99966666666677999999999999999998 89999999999999999999999999999996

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2.9e-42  Score=240.84  Aligned_cols=216  Identities=22%  Similarity=0.433  Sum_probs=186.2

Q ss_pred             CCcCCccccceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCC-----
Q 040370            1 FFDFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSS-----   75 (228)
Q Consensus         1 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-----   75 (228)
                      +||+...  .+.+...+|...|.|++|+|||+.||+|+.||+|++||.++++++..  ...+| ...|++++|.|     
T Consensus       141 ~WD~~Te--Tp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~--~l~gH-~K~It~Lawep~hl~p  215 (480)
T KOG0271|consen  141 LWDLDTE--TPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGR--ALRGH-KKWITALAWEPLHLVP  215 (480)
T ss_pred             eeccCCC--CcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccc--cccCc-ccceeEEeecccccCC
Confidence            5888854  45667779999999999999999999999999999999999986543  33344 88999999976     


Q ss_pred             CCCeEEEEecCCeEEEEeCCCCceeeEEeccc------------------------------------------------
Q 040370           76 TGGMYVTASKDGAIRLWDGVSANCVRSIVGAH------------------------------------------------  107 (228)
Q Consensus        76 ~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~------------------------------------------------  107 (228)
                      ..++|++++.||.++|||+..+.++..+.+|.                                                
T Consensus       216 ~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~la  295 (480)
T KOG0271|consen  216 PCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLA  295 (480)
T ss_pred             CccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCceEEecCCCceEEEEEccchhHHHhhcccchheeeee
Confidence            46689999999999999966555444443221                                                


Q ss_pred             ----------------------------------------------------------------------ccceeEEEEE
Q 040370          108 ----------------------------------------------------------------------GTAEATSANF  117 (228)
Q Consensus       108 ----------------------------------------------------------------------~~~~i~~~~~  117 (228)
                                                                                            |...|+.+.|
T Consensus       296 lsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~f  375 (480)
T KOG0271|consen  296 LSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSF  375 (480)
T ss_pred             ccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEE
Confidence                                                                                  3567899999


Q ss_pred             CCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCC
Q 040370          118 TKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHI  197 (228)
Q Consensus       118 ~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~  197 (228)
                      +||++++++++.|+.|++||.++|+.+..+.+  |-..++.++|+.+.+.++++ +.|.++++||+++.+....+ .+|.
T Consensus       376 SPd~r~IASaSFDkSVkLW~g~tGk~lasfRG--Hv~~VYqvawsaDsRLlVS~-SkDsTLKvw~V~tkKl~~DL-pGh~  451 (480)
T KOG0271|consen  376 SPDGRYIASASFDKSVKLWDGRTGKFLASFRG--HVAAVYQVAWSADSRLLVSG-SKDSTLKVWDVRTKKLKQDL-PGHA  451 (480)
T ss_pred             CCCccEEEEeecccceeeeeCCCcchhhhhhh--ccceeEEEEeccCccEEEEc-CCCceEEEEEeeeeeecccC-CCCC
Confidence            99999999999999999999999999999998  78899999999999888774 55899999999999988888 7999


Q ss_pred             CCcEEEEeCCCCcEEEEecCCCCEEEee
Q 040370          198 GAPRWIEHSPAEAAFITCGTDRSVRFWK  225 (228)
Q Consensus       198 ~~v~~~~~~~~~~~l~s~~~dg~i~vwd  225 (228)
                      ..|.++.|+|||..+++|+.|..+++|.
T Consensus       452 DEVf~vDwspDG~rV~sggkdkv~~lw~  479 (480)
T KOG0271|consen  452 DEVFAVDWSPDGQRVASGGKDKVLRLWR  479 (480)
T ss_pred             ceEEEEEecCCCceeecCCCceEEEeec
Confidence            9999999999999999999999999995

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=6.3e-43  Score=246.45  Aligned_cols=209  Identities=19%  Similarity=0.284  Sum_probs=190.6

Q ss_pred             ccceeEEEeecCcceEEEEEeCC--CCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEec
Q 040370            8 TAKRAFRVIQDTHNVRSVSFHPS--GDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASK   85 (228)
Q Consensus         8 ~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~   85 (228)
                      +......+.+|...|.++.|+|.  +..+|+|+.||++++|++.+...+..+.   +| ...|..++|+|+|++|+|++.
T Consensus       206 ~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~---gH-~~RVs~VafHPsG~~L~Tasf  281 (459)
T KOG0272|consen  206 QCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLE---GH-LARVSRVAFHPSGKFLGTASF  281 (459)
T ss_pred             CcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhh---cc-hhhheeeeecCCCceeeeccc
Confidence            44677788899999999999995  6789999999999999999876655443   34 789999999999999999999


Q ss_pred             CCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCC
Q 040370           86 DGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTE  165 (228)
Q Consensus        86 dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (228)
                      |.+-++||++++..+....+|  ...|.+++|.|||..+++|+.|..-+|||+++++++..+.+  |...+..+.|+|+|
T Consensus       282 D~tWRlWD~~tk~ElL~QEGH--s~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~g--H~k~I~~V~fsPNG  357 (459)
T KOG0272|consen  282 DSTWRLWDLETKSELLLQEGH--SKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAG--HIKEILSVAFSPNG  357 (459)
T ss_pred             ccchhhcccccchhhHhhccc--ccccceeEecCCCceeeccCccchhheeecccCcEEEEecc--cccceeeEeECCCc
Confidence            999999999999988877776  78999999999999999999999999999999999999988  88899999999999


Q ss_pred             cEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCC-CCcEEEEecCCCCEEEeee
Q 040370          166 EFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSP-AEAAFITCGTDRSVRFWKE  226 (228)
Q Consensus       166 ~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~vwd~  226 (228)
                      ..++++++ |++++|||++....+..+ .+|.+-|+.+.|+| .|.+|+|+|.|++++||..
T Consensus       358 y~lATgs~-Dnt~kVWDLR~r~~ly~i-pAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~  417 (459)
T KOG0272|consen  358 YHLATGSS-DNTCKVWDLRMRSELYTI-PAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWST  417 (459)
T ss_pred             eEEeecCC-CCcEEEeeecccccceec-ccccchhhheEecccCCeEEEEcccCcceeeecC
Confidence            88888666 899999999999888887 79999999999999 7899999999999999974

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=4.5e-41  Score=234.93  Aligned_cols=206  Identities=23%  Similarity=0.413  Sum_probs=172.4

Q ss_pred             EEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEe
Q 040370           14 RVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWD   93 (228)
Q Consensus        14 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd   93 (228)
                      .+.+|.++|.|++|+|+|..|++|+.|.++++||+.+..+....+.   | ...|.|++|+|||+.|++|+.||+|++||
T Consensus       110 S~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~Kg---H-~~WVlcvawsPDgk~iASG~~dg~I~lwd  185 (480)
T KOG0271|consen  110 SIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKG---H-KNWVLCVAWSPDGKKIASGSKDGSIRLWD  185 (480)
T ss_pred             ccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecC---C-ccEEEEEEECCCcchhhccccCCeEEEec
Confidence            3458999999999999999999999999999999999887666653   3 88999999999999999999999999999


Q ss_pred             CCCCceee-EEecccccceeEEEEECC-----CCCEEEEeeCCCeEEEEEccCCeeEEEEecc-----------------
Q 040370           94 GVSANCVR-SIVGAHGTAEATSANFTK-----DQRFVLSCGKDSTVKLWEVSSGRLVKQYLGA-----------------  150 (228)
Q Consensus        94 ~~~~~~~~-~~~~~~~~~~i~~~~~~~-----~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~-----------------  150 (228)
                      ..+++++. .+.+|  ...|++++|.|     ..++|++++.||.++|||+..++++..+.+|                 
T Consensus       186 pktg~~~g~~l~gH--~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~gliyS  263 (480)
T KOG0271|consen  186 PKTGQQIGRALRGH--KKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEGLIYS  263 (480)
T ss_pred             CCCCCcccccccCc--ccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCceEEe
Confidence            99987764 44444  78999999976     4457777777777777777554433222111                 


Q ss_pred             --------------------------------------------------------------------------------
Q 040370          151 --------------------------------------------------------------------------------  150 (228)
Q Consensus       151 --------------------------------------------------------------------------------  150 (228)
                                                                                                      
T Consensus       264 gS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgs  343 (480)
T KOG0271|consen  264 GSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGS  343 (480)
T ss_pred             cCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEec
Confidence                                                                                            


Q ss_pred             ---------------------eeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCC
Q 040370          151 ---------------------THTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAE  209 (228)
Q Consensus       151 ---------------------~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~  209 (228)
                                           .|...+..+.|+|+++++++++. |..|++||.++|+.+..+ .+|-.+|+.++|+.|.
T Consensus       344 Dd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSF-DkSVkLW~g~tGk~lasf-RGHv~~VYqvawsaDs  421 (480)
T KOG0271|consen  344 DDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASF-DKSVKLWDGRTGKFLASF-RGHVAAVYQVAWSADS  421 (480)
T ss_pred             CCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeec-ccceeeeeCCCcchhhhh-hhccceeEEEEeccCc
Confidence                                 12233457889999999998766 899999999999999999 8999999999999999


Q ss_pred             cEEEEecCCCCEEEeeec
Q 040370          210 AAFITCGTDRSVRFWKEI  227 (228)
Q Consensus       210 ~~l~s~~~dg~i~vwd~~  227 (228)
                      ++|++|+.|.++++||+.
T Consensus       422 RLlVS~SkDsTLKvw~V~  439 (480)
T KOG0271|consen  422 RLLVSGSKDSTLKVWDVR  439 (480)
T ss_pred             cEEEEcCCCceEEEEEee
Confidence            999999999999999975

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=5.5e-40  Score=220.58  Aligned_cols=215  Identities=18%  Similarity=0.312  Sum_probs=183.6

Q ss_pred             CcCCccc---cceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCC
Q 040370            2 FDFSKAT---AKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGG   78 (228)
Q Consensus         2 wd~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~   78 (228)
                      |++....   .....++.+|+..|..+..+++|++.++++.|+++++||+.+++....+.   +| ...|.+++|+|+.+
T Consensus        43 W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~---GH-~~dVlsva~s~dn~  118 (315)
T KOG0279|consen   43 WKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFV---GH-TKDVLSVAFSTDNR  118 (315)
T ss_pred             EEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEE---ec-CCceEEEEecCCCc
Confidence            5555433   34577888999999999999999999999999999999999997665554   34 88999999999999


Q ss_pred             eEEEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCC--CCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeee
Q 040370           79 MYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKD--QRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLR  156 (228)
Q Consensus        79 ~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~  156 (228)
                      .+++|+.|.+|++|++.. .+..++....+...|.|+.|+|+  ..+|++++.|++|++||+++.+....+.+  |...+
T Consensus       119 qivSGSrDkTiklwnt~g-~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~g--h~~~v  195 (315)
T KOG0279|consen  119 QIVSGSRDKTIKLWNTLG-VCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIG--HSGYV  195 (315)
T ss_pred             eeecCCCcceeeeeeecc-cEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhcccc--ccccE
Confidence            999999999999999864 44445544433789999999997  78999999999999999999988888877  77889


Q ss_pred             eEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370          157 FQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEI  227 (228)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~  227 (228)
                      ..+.++|+|..++++| .||.+.+||++.++.+..+  +|...|.+++|+|+...|+.+ .+..|+|||+.
T Consensus       196 ~t~~vSpDGslcasGg-kdg~~~LwdL~~~k~lysl--~a~~~v~sl~fspnrywL~~a-t~~sIkIwdl~  262 (315)
T KOG0279|consen  196 NTVTVSPDGSLCASGG-KDGEAMLWDLNEGKNLYSL--EAFDIVNSLCFSPNRYWLCAA-TATSIKIWDLE  262 (315)
T ss_pred             EEEEECCCCCEEecCC-CCceEEEEEccCCceeEec--cCCCeEeeEEecCCceeEeec-cCCceEEEecc
Confidence            9999999999988855 5899999999999998776  789999999999988766655 45569999974

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=4.7e-39  Score=213.17  Aligned_cols=218  Identities=15%  Similarity=0.341  Sum_probs=188.9

Q ss_pred             CCcCCccccceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeE
Q 040370            1 FFDFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMY   80 (228)
Q Consensus         1 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l   80 (228)
                      +||+++....+...+.+|+..|+++.|..+|+.+++|++||+++|||++...+...++.     .++|+++..+|+...|
T Consensus        65 lyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~-----~spVn~vvlhpnQteL  139 (311)
T KOG0315|consen   65 LYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQH-----NSPVNTVVLHPNQTEL  139 (311)
T ss_pred             EEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhccC-----CCCcceEEecCCcceE
Confidence            58999888888999999999999999999999999999999999999998555444332     7899999999999999


Q ss_pred             EEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCe------eEEEEecceeee
Q 040370           81 VTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGR------LVKQYLGATHTQ  154 (228)
Q Consensus        81 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~------~~~~~~~~~~~~  154 (228)
                      ++|..+|.|++||+.+......+.... ...|.++...|||.+++.+...|+.++|++-+.+      ++.+++.  |..
T Consensus       140 is~dqsg~irvWDl~~~~c~~~liPe~-~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~a--h~~  216 (311)
T KOG0315|consen  140 ISGDQSGNIRVWDLGENSCTHELIPED-DTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQA--HNG  216 (311)
T ss_pred             EeecCCCcEEEEEccCCccccccCCCC-CcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheec--ccc
Confidence            999999999999999887666654433 6789999999999999999999999999987643      3334443  788


Q ss_pred             eeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370          155 LRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEI  227 (228)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~  227 (228)
                      .+..+.++|++++++++++ |.+++||+..+.-.......+|...+..++||.|+.||+||+.|+.+++|++.
T Consensus       217 ~il~C~lSPd~k~lat~ss-dktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~  288 (311)
T KOG0315|consen  217 HILRCLLSPDVKYLATCSS-DKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLS  288 (311)
T ss_pred             eEEEEEECCCCcEEEeecC-CceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccc
Confidence            8999999999999999877 79999999988834444447999999999999999999999999999999975

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=1.3e-38  Score=214.05  Aligned_cols=215  Identities=18%  Similarity=0.305  Sum_probs=181.6

Q ss_pred             CCcCCccccceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCC--CC
Q 040370            1 FFDFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSST--GG   78 (228)
Q Consensus         1 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~   78 (228)
                      +||+...  +...++.+|...|.+++|+||...+++|+.|.+|++|+............   .+.+-|+|+.|+|+  ..
T Consensus        89 lWDl~~g--~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~---~~~~WVscvrfsP~~~~p  163 (315)
T KOG0279|consen   89 LWDLATG--ESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHED---SHREWVSCVRFSPNESNP  163 (315)
T ss_pred             EEEecCC--cEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecC---CCcCcEEEEEEcCCCCCc
Confidence            5888855  56677789999999999999999999999999999999876543332221   11678999999997  67


Q ss_pred             eEEEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeE
Q 040370           79 MYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQ  158 (228)
Q Consensus        79 ~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~  158 (228)
                      +|++++.|++|++||+++.+....+.+|  ...++.++++|||..+++|+.||.+.+||++.++.+..+.   +...+.+
T Consensus       164 ~Ivs~s~DktvKvWnl~~~~l~~~~~gh--~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~---a~~~v~s  238 (315)
T KOG0279|consen  164 IIVSASWDKTVKVWNLRNCQLRTTFIGH--SGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLE---AFDIVNS  238 (315)
T ss_pred             EEEEccCCceEEEEccCCcchhhccccc--cccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEecc---CCCeEee
Confidence            9999999999999999999999888886  7799999999999999999999999999999999988776   6778999


Q ss_pred             EEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCC--------CCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370          159 AVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNH--------IGAPRWIEHSPAEAAFITCGTDRSVRFWKEI  227 (228)
Q Consensus       159 ~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~--------~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~  227 (228)
                      ++|+|+...+.++..  ..|+|||+.++..+..+....        .-...+++|+++|..|++|-.|+.|++|.+.
T Consensus       239 l~fspnrywL~~at~--~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~  313 (315)
T KOG0279|consen  239 LCFSPNRYWLCAATA--TSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA  313 (315)
T ss_pred             EEecCCceeEeeccC--CceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence            999998777666443  679999999988777663211        2234568999999999999999999999874

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=8.7e-39  Score=216.22  Aligned_cols=207  Identities=19%  Similarity=0.322  Sum_probs=190.1

Q ss_pred             ceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCC-CCCeEEEEecCCe
Q 040370           10 KRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSS-TGGMYVTASKDGA   88 (228)
Q Consensus        10 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~   88 (228)
                      +...++.+|++.+.|+.|-+ ...|++++.|.+..+||+++++....+.   +| .+.|.++.++| +++.+++|+.|+.
T Consensus       136 ~v~r~l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~g~~~~~f~---GH-~gDV~slsl~p~~~ntFvSg~cD~~  210 (343)
T KOG0286|consen  136 RVSRELAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIETGQQTQVFH---GH-TGDVMSLSLSPSDGNTFVSGGCDKS  210 (343)
T ss_pred             eeeeeecCccceeEEEEEcC-CCceEecCCCceEEEEEcccceEEEEec---CC-cccEEEEecCCCCCCeEEecccccc
Confidence            34455779999999999987 5578899999999999999999877765   33 88999999999 9999999999999


Q ss_pred             EEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEE
Q 040370           89 IRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFV  168 (228)
Q Consensus        89 v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (228)
                      .++||++.+...+.|.+|  ...|+++.|.|+|.-+++|+.|++.++||+|..+.+..+........+.++.|+..|+++
T Consensus       211 aklWD~R~~~c~qtF~gh--esDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlL  288 (343)
T KOG0286|consen  211 AKLWDVRSGQCVQTFEGH--ESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLL  288 (343)
T ss_pred             eeeeeccCcceeEeeccc--ccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEE
Confidence            999999999999999987  789999999999999999999999999999999999999876677789999999999999


Q ss_pred             EEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEee
Q 040370          169 LSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWK  225 (228)
Q Consensus       169 ~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd  225 (228)
                      +++.. |.++.+||.-.++....+ .+|.+.|+++..+|||..++||+.|..++||.
T Consensus       289 fagy~-d~~c~vWDtlk~e~vg~L-~GHeNRvScl~~s~DG~av~TgSWDs~lriW~  343 (343)
T KOG0286|consen  289 FAGYD-DFTCNVWDTLKGERVGVL-AGHENRVSCLGVSPDGMAVATGSWDSTLRIWA  343 (343)
T ss_pred             Eeeec-CCceeEeeccccceEEEe-eccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence            99654 899999999999988888 79999999999999999999999999999994

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=1.4e-37  Score=210.43  Aligned_cols=208  Identities=15%  Similarity=0.272  Sum_probs=182.2

Q ss_pred             ceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeE
Q 040370           10 KRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAI   89 (228)
Q Consensus        10 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v   89 (228)
                      +....+.+|...|.++.|++|.+++++++.||.+.|||.-+......++.+    ...|..++|+|.|+++++|+-|+..
T Consensus        46 ~~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~----s~WVMtCA~sPSg~~VAcGGLdN~C  121 (343)
T KOG0286|consen   46 RTRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLP----SSWVMTCAYSPSGNFVACGGLDNKC  121 (343)
T ss_pred             eeEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecC----ceeEEEEEECCCCCeEEecCcCcee
Confidence            334556699999999999999999999999999999999887776666665    6789999999999999999999999


Q ss_pred             EEEeCCCC------ceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECC
Q 040370           90 RLWDGVSA------NCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFND  163 (228)
Q Consensus        90 ~iwd~~~~------~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (228)
                      .||++.+.      +..+.+.+|  .+.+.++.|-+| ..|+|++.|.+..+||+++++.+..+.+  |..-+.++.++|
T Consensus       122 siy~ls~~d~~g~~~v~r~l~gH--tgylScC~f~dD-~~ilT~SGD~TCalWDie~g~~~~~f~G--H~gDV~slsl~p  196 (343)
T KOG0286|consen  122 SIYPLSTRDAEGNVRVSRELAGH--TGYLSCCRFLDD-NHILTGSGDMTCALWDIETGQQTQVFHG--HTGDVMSLSLSP  196 (343)
T ss_pred             EEEecccccccccceeeeeecCc--cceeEEEEEcCC-CceEecCCCceEEEEEcccceEEEEecC--CcccEEEEecCC
Confidence            99999855      234455555  889999999985 5689999999999999999999999987  788899999999


Q ss_pred             CCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370          164 TEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEI  227 (228)
Q Consensus       164 ~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~  227 (228)
                      .....+++|+-|+..++||+|.+.....+ .+|.+.|+++.|.|+|.-+++|+.|++.++||++
T Consensus       197 ~~~ntFvSg~cD~~aklWD~R~~~c~qtF-~ghesDINsv~ffP~G~afatGSDD~tcRlyDlR  259 (343)
T KOG0286|consen  197 SDGNTFVSGGCDKSAKLWDVRSGQCVQTF-EGHESDINSVRFFPSGDAFATGSDDATCRLYDLR  259 (343)
T ss_pred             CCCCeEEecccccceeeeeccCcceeEee-cccccccceEEEccCCCeeeecCCCceeEEEeec
Confidence            44444444555899999999999999999 7999999999999999999999999999999986

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=2.5e-37  Score=232.94  Aligned_cols=210  Identities=16%  Similarity=0.320  Sum_probs=185.4

Q ss_pred             eeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEE--------e--------------------eecccee
Q 040370           11 RAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCY--------L--------------------SANVPEI   62 (228)
Q Consensus        11 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~--------~--------------------~~~~~~~   62 (228)
                      ..+++......++|..|++++..||.|..|..|++|.+...+..        .                    ..... .
T Consensus       370 c~YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L-~  448 (707)
T KOG0263|consen  370 CMYTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTL-Y  448 (707)
T ss_pred             EEEEEEEcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEe-e
Confidence            34455556678999999999999999999999999998742210        0                    00112 2


Q ss_pred             eeccceeeEEeCCCCCeEEEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCe
Q 040370           63 SVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGR  142 (228)
Q Consensus        63 ~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~  142 (228)
                      .|.++|..+.|+|+.++|++||+|+++++|.+++...+....+|  ..+|..+.|+|.|-|+||++.|++.++|......
T Consensus       449 GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH--~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~  526 (707)
T KOG0263|consen  449 GHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGH--LAPVWDVQFAPRGYYFATASHDQTARLWSTDHNK  526 (707)
T ss_pred             cCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCC--CcceeeEEecCCceEEEecCCCceeeeeecccCC
Confidence            34999999999999999999999999999999999999999876  7899999999999999999999999999999989


Q ss_pred             eEEEEecceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEE
Q 040370          143 LVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVR  222 (228)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~  222 (228)
                      +++.+.+  |-.-+-++.|+|+..|++++++ |.++++||+.+|..+..+ .+|.++|.+++|+|+|++|++|+.||.|+
T Consensus       527 PlRifag--hlsDV~cv~FHPNs~Y~aTGSs-D~tVRlWDv~~G~~VRiF-~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~  602 (707)
T KOG0263|consen  527 PLRIFAG--HLSDVDCVSFHPNSNYVATGSS-DRTVRLWDVSTGNSVRIF-TGHKGPVTALAFSPCGRYLASGDEDGLIK  602 (707)
T ss_pred             chhhhcc--cccccceEEECCcccccccCCC-CceEEEEEcCCCcEEEEe-cCCCCceEEEEEcCCCceEeecccCCcEE
Confidence            9998887  7778889999999999999754 899999999999999988 89999999999999999999999999999


Q ss_pred             Eeeec
Q 040370          223 FWKEI  227 (228)
Q Consensus       223 vwd~~  227 (228)
                      +||+.
T Consensus       603 iWDl~  607 (707)
T KOG0263|consen  603 IWDLA  607 (707)
T ss_pred             EEEcC
Confidence            99974

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=1.4e-38  Score=223.85  Aligned_cols=201  Identities=20%  Similarity=0.381  Sum_probs=185.0

Q ss_pred             cCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCCC
Q 040370           18 DTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSA   97 (228)
Q Consensus        18 ~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~   97 (228)
                      |...|++++|+|+...|+++++||+|+|||....+....+.   +| .-.|.+++|+|...++++|+.|..|++||.+++
T Consensus       179 h~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~---GH-gwdVksvdWHP~kgLiasgskDnlVKlWDprSg  254 (464)
T KOG0284|consen  179 HAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLR---GH-GWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSG  254 (464)
T ss_pred             hhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheec---cC-CCCcceeccCCccceeEEccCCceeEeecCCCc
Confidence            45899999999999999999999999999998776554443   34 788999999999999999999999999999999


Q ss_pred             ceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCCe
Q 040370           98 NCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNE  177 (228)
Q Consensus        98 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  177 (228)
                      +++.++..|  +..|..+.|+|++++|++++.|..++++|+++.+.+..+++  |...+.++.|+|-...++++++.||.
T Consensus       255 ~cl~tlh~H--KntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~--Hkkdv~~~~WhP~~~~lftsgg~Dgs  330 (464)
T KOG0284|consen  255 SCLATLHGH--KNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRG--HKKDVTSLTWHPLNESLFTSGGSDGS  330 (464)
T ss_pred             chhhhhhhc--cceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhc--chhhheeeccccccccceeeccCCCc
Confidence            999988766  78999999999999999999999999999999999998887  77889999999999999999999999


Q ss_pred             EEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeee
Q 040370          178 IVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKE  226 (228)
Q Consensus       178 i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~  226 (228)
                      |..|.+...+++..+..+|...|.+++|+|-|.+|++|+.|.++++|..
T Consensus       331 vvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r  379 (464)
T KOG0284|consen  331 VVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTR  379 (464)
T ss_pred             eEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeecc
Confidence            9999998888888888899999999999999999999999999999964

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=1.6e-38  Score=223.57  Aligned_cols=201  Identities=21%  Similarity=0.393  Sum_probs=180.8

Q ss_pred             ecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCC
Q 040370           17 QDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVS   96 (228)
Q Consensus        17 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~   96 (228)
                      .|..+|+++.|++++.++++|+.+|.|++|+..-..    ......||...|++++|+|....|++|+.||+|+|||...
T Consensus       136 aHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnn----Vk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~  211 (464)
T KOG0284|consen  136 AHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNN----VKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRM  211 (464)
T ss_pred             hhcccceeEEEccCCCEEEEcCCCceEEecccchhh----hHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccC
Confidence            699999999999999999999999999999976533    2233345478999999999999999999999999999999


Q ss_pred             CceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCC
Q 040370           97 ANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSN  176 (228)
Q Consensus        97 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  176 (228)
                      .+....+.+|  .-.|.+++|+|...++++++.|..|++||.++++++.++..  |...+..+.|+++++++++.+ .|.
T Consensus       212 ~kee~vL~GH--gwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~--HKntVl~~~f~~n~N~Llt~s-kD~  286 (464)
T KOG0284|consen  212 PKEERVLRGH--GWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHG--HKNTVLAVKFNPNGNWLLTGS-KDQ  286 (464)
T ss_pred             CchhheeccC--CCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhh--ccceEEEEEEcCCCCeeEEcc-CCc
Confidence            9888888776  78899999999999999999999999999999999998866  888999999999998888755 489


Q ss_pred             eEEEEEcCCcceeEEeecCCCCCcEEEEeCC-CCcEEEEecCCCCEEEeeec
Q 040370          177 EIVIWDALTAEKVAKWSSNHIGAPRWIEHSP-AEAAFITCGTDRSVRFWKEI  227 (228)
Q Consensus       177 ~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~vwd~~  227 (228)
                      .++++|+++.+.+..+ .+|...|+++.|+| ...+|.+|+.||.|..|.+.
T Consensus       287 ~~kv~DiR~mkEl~~~-r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~  337 (464)
T KOG0284|consen  287 SCKVFDIRTMKELFTY-RGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVG  337 (464)
T ss_pred             eEEEEehhHhHHHHHh-hcchhhheeeccccccccceeeccCCCceEEEecc
Confidence            9999999988888888 79999999999999 67789999999999999864

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=3.9e-35  Score=196.63  Aligned_cols=210  Identities=19%  Similarity=0.384  Sum_probs=176.2

Q ss_pred             eeEEEeecCcceEEEEEeCC-CCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeE
Q 040370           11 RAFRVIQDTHNVRSVSFHPS-GDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAI   89 (228)
Q Consensus        11 ~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v   89 (228)
                      ....+.+|.+.+..++|+|- |..||+++.|..|++|+...+............|+..|++++|+|.|++|+++|.|.++
T Consensus         6 ~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~   85 (312)
T KOG0645|consen    6 LEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATV   85 (312)
T ss_pred             eEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceE
Confidence            45566789999999999997 88999999999999999986443333323333448999999999999999999999999


Q ss_pred             EEEeCCCC--ceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCC---eeEEEEecceeeeeeeEEEECCC
Q 040370           90 RLWDGVSA--NCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSG---RLVKQYLGATHTQLRFQAVFNDT  164 (228)
Q Consensus        90 ~iwd~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~---~~~~~~~~~~~~~~~~~~~~~~~  164 (228)
                      .||.-..+  +++..+.+|  ..+|.+++|+++|++||+++.|+.|.+|.+..+   ++...++.  |.+-+..+.|+|.
T Consensus        86 ~Iw~k~~~efecv~~lEGH--EnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~--HtqDVK~V~WHPt  161 (312)
T KOG0645|consen   86 VIWKKEDGEFECVATLEGH--ENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQE--HTQDVKHVIWHPT  161 (312)
T ss_pred             EEeecCCCceeEEeeeecc--ccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeecc--ccccccEEEEcCC
Confidence            99986644  567777777  789999999999999999999999999999754   34555555  7778889999999


Q ss_pred             CcEEEEeeCCCCeEEEEEcCCc---ceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeee
Q 040370          165 EEFVLSIDEPSNEIVIWDALTA---EKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKE  226 (228)
Q Consensus       165 ~~~~~~~~~~d~~i~i~d~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~  226 (228)
                      ...+++++. |++|++|+-..+   .+..++ .+|.+.|.+++|+|.|..|++++.|++++||..
T Consensus       162 ~dlL~S~SY-DnTIk~~~~~~dddW~c~~tl-~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~  224 (312)
T KOG0645|consen  162 EDLLFSCSY-DNTIKVYRDEDDDDWECVQTL-DGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRL  224 (312)
T ss_pred             cceeEEecc-CCeEEEEeecCCCCeeEEEEe-cCccceEEEEEecCCCceEEEecCCcceEeeee
Confidence            998888666 899999986632   345566 789999999999999999999999999999984

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=8.5e-36  Score=226.90  Aligned_cols=208  Identities=23%  Similarity=0.452  Sum_probs=179.1

Q ss_pred             eEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEc-ccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEE
Q 040370           12 AFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDV-NTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIR   90 (228)
Q Consensus        12 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~   90 (228)
                      ...+.+|...|.+++|+|+++++++++.|++|+|||+ ..+.....+.   +| ...|++++|+|+++.+++|+.|++|+
T Consensus       196 ~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~---gH-~~~v~~~~f~p~g~~i~Sgs~D~tvr  271 (456)
T KOG0266|consen  196 LRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLK---GH-STYVTSVAFSPDGNLLVSGSDDGTVR  271 (456)
T ss_pred             hccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEec---CC-CCceEEEEecCCCCEEEEecCCCcEE
Confidence            3344689999999999999999999999999999999 4446655554   34 88999999999999999999999999


Q ss_pred             EEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCe--eEEEEecceeeeeeeEEEECCCCcEE
Q 040370           91 LWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGR--LVKQYLGATHTQLRFQAVFNDTEEFV  168 (228)
Q Consensus        91 iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (228)
                      +||++++++...+..|  ...|++++|++++++|++++.|+.|++||+.++.  +...+........+..+.|+|++.++
T Consensus       272 iWd~~~~~~~~~l~~h--s~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~l  349 (456)
T KOG0266|consen  272 IWDVRTGECVRKLKGH--SDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYL  349 (456)
T ss_pred             EEeccCCeEEEeeecc--CCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEE
Confidence            9999999999999987  7799999999999999999999999999999988  45566554333268999999999999


Q ss_pred             EEeeCCCCeEEEEEcCCcceeEEeecCCCCCc---EEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370          169 LSIDEPSNEIVIWDALTAEKVAKWSSNHIGAP---RWIEHSPAEAAFITCGTDRSVRFWKEI  227 (228)
Q Consensus       169 ~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v---~~~~~~~~~~~l~s~~~dg~i~vwd~~  227 (228)
                      +++.. |+.+++||++.+.....+ .+|...+   .+...++.+.++++|+.|+.|.+|++.
T Consensus       350 l~~~~-d~~~~~w~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~  409 (456)
T KOG0266|consen  350 LSASL-DRTLKLWDLRSGKSVGTY-TGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSS  409 (456)
T ss_pred             EEecC-CCeEEEEEccCCcceeee-cccCCcceeEecccccCCCCeEEEEeCCceEEEEeCC
Confidence            99766 799999999999998888 5666643   334557789999999999999999974

>PTZ00421 coronin; Provisional

Probab=100.00  E-value=6.9e-35  Score=221.59  Aligned_cols=210  Identities=11%  Similarity=0.200  Sum_probs=168.3

Q ss_pred             EEeecCcceEEEEEeC-CCCEEEEecCCCeEEEEEcccceEEe----eeccceeeeccceeeEEeCCCC-CeEEEEecCC
Q 040370           14 RVIQDTHNVRSVSFHP-SGDFLLAGTDHPIAHLYDVNTFQCYL----SANVPEISVNGAINQVRYSSTG-GMYVTASKDG   87 (228)
Q Consensus        14 ~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~vw~~~~~~~~~----~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg   87 (228)
                      .+.+|.+.|.+++|+| ++++|++|+.|++|++||+.++....    ......+| ...|.+++|+|++ ++|++|+.|+
T Consensus        70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH-~~~V~~l~f~P~~~~iLaSgs~Dg  148 (493)
T PTZ00421         70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGH-TKKVGIVSFHPSAMNVLASAGADM  148 (493)
T ss_pred             eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCC-CCcEEEEEeCcCCCCEEEEEeCCC
Confidence            3568999999999999 88999999999999999997653211    11122233 7899999999975 6999999999


Q ss_pred             eEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcE
Q 040370           88 AIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEF  167 (228)
Q Consensus        88 ~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (228)
                      .|++||+++++....+..|  ...|.+++|+|++.+|++++.|+.|++||+++++.+..+..+.. .....+.|.+++..
T Consensus       149 tVrIWDl~tg~~~~~l~~h--~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~-~~~~~~~w~~~~~~  225 (493)
T PTZ00421        149 VVNVWDVERGKAVEVIKCH--SDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHAS-AKSQRCLWAKRKDL  225 (493)
T ss_pred             EEEEEECCCCeEEEEEcCC--CCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCC-CcceEEEEcCCCCe
Confidence            9999999999888887765  67899999999999999999999999999999998888776432 22345678888888


Q ss_pred             EEEee---CCCCeEEEEEcCCcceeEEeec-CCCCCcEEEEeCCCCcEEEEec-CCCCEEEeeec
Q 040370          168 VLSID---EPSNEIVIWDALTAEKVAKWSS-NHIGAPRWIEHSPAEAAFITCG-TDRSVRFWKEI  227 (228)
Q Consensus       168 ~~~~~---~~d~~i~i~d~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~-~dg~i~vwd~~  227 (228)
                      +++++   +.|+.|++||+++......... .+...+....|++++++|++++ .|+.|++||+.
T Consensus       226 ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~  290 (493)
T PTZ00421        226 IITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELM  290 (493)
T ss_pred             EEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEee
Confidence            88765   3479999999987654443322 3334566678999999999888 59999999974

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=3e-35  Score=223.91  Aligned_cols=202  Identities=21%  Similarity=0.417  Sum_probs=176.9

Q ss_pred             cCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeC-CC
Q 040370           18 DTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDG-VS   96 (228)
Q Consensus        18 ~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~-~~   96 (228)
                      +...|.++.|+|+|+.+++++.++.+++|+....+. .......+| ...|.+++|+|+++++++++.|++|++||+ ..
T Consensus       158 ~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~-~~~~~l~~h-~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~  235 (456)
T KOG0266|consen  158 ECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS-NLLRELSGH-TRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDD  235 (456)
T ss_pred             ccCceEEEEEcCCCCeEEEccCCCcEEEeecccccc-hhhcccccc-ccceeeeEECCCCcEEEEecCCceEEEeeccCC
Confidence            378999999999999999999999999999976662 122222334 889999999999999999999999999999 55


Q ss_pred             CceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCC
Q 040370           97 ANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSN  176 (228)
Q Consensus        97 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  176 (228)
                      +..++.+.+|  ...|++++|+|+++++++|+.|++|++||++++++...+.+  |...+..++|++++.++++++. |+
T Consensus       236 ~~~~~~l~gH--~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~--hs~~is~~~f~~d~~~l~s~s~-d~  310 (456)
T KOG0266|consen  236 GRNLKTLKGH--STYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKG--HSDGISGLAFSPDGNLLVSASY-DG  310 (456)
T ss_pred             CeEEEEecCC--CCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeec--cCCceEEEEECCCCCEEEEcCC-Cc
Confidence            5888888876  78899999999999999999999999999999999999988  7778999999999999999855 89


Q ss_pred             eEEEEEcCCcce--eEEeecCCCC--CcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370          177 EIVIWDALTAEK--VAKWSSNHIG--APRWIEHSPAEAAFITCGTDRSVRFWKEI  227 (228)
Q Consensus       177 ~i~i~d~~~~~~--~~~~~~~~~~--~v~~~~~~~~~~~l~s~~~dg~i~vwd~~  227 (228)
                      .|++||+.++..  ...+ ..+..  +++.+.|+|++.++++++.|+.+++||+.
T Consensus       311 ~i~vwd~~~~~~~~~~~~-~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~  364 (456)
T KOG0266|consen  311 TIRVWDLETGSKLCLKLL-SGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLR  364 (456)
T ss_pred             cEEEEECCCCceeeeecc-cCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEcc
Confidence            999999999983  4555 34444  59999999999999999999999999975

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=100.00  E-value=8.9e-37  Score=208.63  Aligned_cols=226  Identities=62%  Similarity=1.016  Sum_probs=207.3

Q ss_pred             CCcCCccccceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeE
Q 040370            1 FFDFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMY   80 (228)
Q Consensus         1 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l   80 (228)
                      +||+.++..++.++.+....+|.++.|+|.|++|++|.+...+++||+++.++.........| .+.|+++.+++.+++.
T Consensus       198 lFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qh-t~ai~~V~Ys~t~~lY  276 (430)
T KOG0640|consen  198 LFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQH-TGAITQVRYSSTGSLY  276 (430)
T ss_pred             EEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCccccc-ccceeEEEecCCccEE
Confidence            578888888888888889999999999999999999999999999999999988877754444 9999999999999999


Q ss_pred             EEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecce---eeeeee
Q 040370           81 VTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGAT---HTQLRF  157 (228)
Q Consensus        81 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~---~~~~~~  157 (228)
                      ++++.||.|++||--+++++.++...|.+..|.+..|..+++++++.+.|..+++|.+.+++.+..+.+..   .....+
T Consensus       277 vTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rt  356 (430)
T KOG0640|consen  277 VTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRT  356 (430)
T ss_pred             EEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhh
Confidence            99999999999999999999999998889999999999999999999999999999999999999998752   233456


Q ss_pred             EEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370          158 QAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEI  227 (228)
Q Consensus       158 ~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~  227 (228)
                      ...|+....|++.-....+.+.-||.+++.....+..+|++.+..+.-+|.+.-++||+.|-++++|-.+
T Consensus       357 qAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWyrr  426 (430)
T KOG0640|consen  357 QAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWYRR  426 (430)
T ss_pred             hhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccceeeeeeec
Confidence            7789999999999888889999999999999888888999999999999999999999999999999753

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=8.8e-36  Score=207.00  Aligned_cols=215  Identities=20%  Similarity=0.369  Sum_probs=193.1

Q ss_pred             CCcCCccccceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeE
Q 040370            1 FFDFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMY   80 (228)
Q Consensus         1 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l   80 (228)
                      +||+... ...+....+|...|.+++|-|.|+++++++.|.+|+.|++.++.++..+..+    ..-|..++.+.||..+
T Consensus       176 LWd~~~~-~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h----~ewvr~v~v~~DGti~  250 (406)
T KOG0295|consen  176 LWDFDTF-FRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGH----SEWVRMVRVNQDGTII  250 (406)
T ss_pred             heeHHHH-HHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCc----hHhEEEEEecCCeeEE
Confidence            4666643 3344556789999999999999999999999999999999999999888754    6789999999999999


Q ss_pred             EEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCC---------------CCEEEEeeCCCeEEEEEccCCeeEE
Q 040370           81 VTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKD---------------QRFVLSCGKDSTVKLWEVSSGRLVK  145 (228)
Q Consensus        81 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~---------------~~~l~~~~~d~~i~~wd~~~~~~~~  145 (228)
                      ++|+.|.++++|-+.++++...+..|  .-+|.+++|.|.               ++++.+++.|++|++||+.++.++.
T Consensus       251 As~s~dqtl~vW~~~t~~~k~~lR~h--Eh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~  328 (406)
T KOG0295|consen  251 ASCSNDQTLRVWVVATKQCKAELREH--EHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLF  328 (406)
T ss_pred             EecCCCceEEEEEeccchhhhhhhcc--ccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEE
Confidence            99999999999999999888888877  557888888764               2589999999999999999999999


Q ss_pred             EEecceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEee
Q 040370          146 QYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWK  225 (228)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd  225 (228)
                      ++.+  |...+..++|+|.|+|+++++. |+++++||++++++...+ ..|..-++++.|+.+-.+++||+-|..+++|.
T Consensus       329 tL~g--hdnwVr~~af~p~Gkyi~ScaD-Dktlrvwdl~~~~cmk~~-~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwE  404 (406)
T KOG0295|consen  329 TLVG--HDNWVRGVAFSPGGKYILSCAD-DKTLRVWDLKNLQCMKTL-EAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE  404 (406)
T ss_pred             EEec--ccceeeeeEEcCCCeEEEEEec-CCcEEEEEeccceeeecc-CCCcceeEEEecCCCCceEEeccccceeeeee
Confidence            9988  8889999999999999999776 899999999999999999 59999999999999999999999999999997


Q ss_pred             e
Q 040370          226 E  226 (228)
Q Consensus       226 ~  226 (228)
                      -
T Consensus       405 c  405 (406)
T KOG0295|consen  405 C  405 (406)
T ss_pred             c
Confidence            4

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=7.7e-36  Score=202.58  Aligned_cols=207  Identities=21%  Similarity=0.320  Sum_probs=178.8

Q ss_pred             eeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEE
Q 040370           11 RAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIR   90 (228)
Q Consensus        11 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~   90 (228)
                      +...+.+|.+.|..+.|+|+|..||+|+.|..|.+|+.....  ..+....+| .++|..+.|.++++.+++++.|.+++
T Consensus        39 p~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdc--eN~~~lkgH-sgAVM~l~~~~d~s~i~S~gtDk~v~  115 (338)
T KOG0265|consen   39 PIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDC--ENFWVLKGH-SGAVMELHGMRDGSHILSCGTDKTVR  115 (338)
T ss_pred             hhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccc--cceeeeccc-cceeEeeeeccCCCEEEEecCCceEE
Confidence            344556899999999999999999999999999999965322  122223345 99999999999999999999999999


Q ss_pred             EEeCCCCceeeEEecccccceeEEEEECCCC-CEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEE
Q 040370           91 LWDGVSANCVRSIVGAHGTAEATSANFTKDQ-RFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVL  169 (228)
Q Consensus        91 iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (228)
                      .||+++|+..++++.|  ..-++++.-+.-| ..+.+++.|+++++||+|+...++++.   .....+++.|...+..++
T Consensus       116 ~wD~~tG~~~rk~k~h--~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~---~kyqltAv~f~d~s~qv~  190 (338)
T KOG0265|consen  116 GWDAETGKRIRKHKGH--TSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE---NKYQLTAVGFKDTSDQVI  190 (338)
T ss_pred             EEecccceeeehhccc--cceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc---cceeEEEEEeccccccee
Confidence            9999999999999987  6778888744434 467789999999999999888887775   345678999999999999


Q ss_pred             EeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370          170 SIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEI  227 (228)
Q Consensus       170 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~  227 (228)
                      +++- |+.|++||++.......+ .+|..+|+.+..+|+|.++.+-+.|.++++||++
T Consensus       191 sggI-dn~ikvWd~r~~d~~~~l-sGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~r  246 (338)
T KOG0265|consen  191 SGGI-DNDIKVWDLRKNDGLYTL-SGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVR  246 (338)
T ss_pred             eccc-cCceeeeccccCcceEEe-ecccCceeeEEeccCCCccccccccceEEEEEec
Confidence            8776 799999999999999988 8999999999999999999999999999999975

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=8.2e-36  Score=207.19  Aligned_cols=202  Identities=19%  Similarity=0.338  Sum_probs=184.6

Q ss_pred             EEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEe
Q 040370           14 RVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWD   93 (228)
Q Consensus        14 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd   93 (228)
                      .+.+|.+.|.|+++.|.+.+|++|+.|++++|||+.+++....+..   | ...|..+++++-..++++++.|+.|+.||
T Consensus       146 Vi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltG---h-i~~vr~vavS~rHpYlFs~gedk~VKCwD  221 (460)
T KOG0285|consen  146 VISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTG---H-IETVRGVAVSKRHPYLFSAGEDKQVKCWD  221 (460)
T ss_pred             hhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecc---h-hheeeeeeecccCceEEEecCCCeeEEEe
Confidence            3458999999999999999999999999999999999998776653   3 78899999999999999999999999999


Q ss_pred             CCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeC
Q 040370           94 GVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDE  173 (228)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (228)
                      ++..+.++.+.+|  -..|.+++.+|.-..|++|+.|.++++||+++...+..+.+  |...+..+.+.|-...+++++ 
T Consensus       222 Le~nkvIR~YhGH--lS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~G--H~~~V~~V~~~~~dpqvit~S-  296 (460)
T KOG0285|consen  222 LEYNKVIRHYHGH--LSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSG--HTNPVASVMCQPTDPQVITGS-  296 (460)
T ss_pred             chhhhhHHHhccc--cceeEEEeccccceeEEecCCcceEEEeeecccceEEEecC--CCCcceeEEeecCCCceEEec-
Confidence            9999999988876  77899999999999999999999999999999999999988  778889999999888888854 


Q ss_pred             CCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeee
Q 040370          174 PSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKE  226 (228)
Q Consensus       174 ~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~  226 (228)
                      .|++|++||++.++....+ ..|...|.+++.+|....+|+++.|. |+-|++
T Consensus       297 ~D~tvrlWDl~agkt~~tl-t~hkksvral~lhP~e~~fASas~dn-ik~w~~  347 (460)
T KOG0285|consen  297 HDSTVRLWDLRAGKTMITL-THHKKSVRALCLHPKENLFASASPDN-IKQWKL  347 (460)
T ss_pred             CCceEEEeeeccCceeEee-ecccceeeEEecCCchhhhhccCCcc-ceeccC
Confidence            5899999999999999888 78999999999999999999999886 788875

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=6.2e-35  Score=219.56  Aligned_cols=202  Identities=22%  Similarity=0.390  Sum_probs=181.3

Q ss_pred             cCcceEEEEEeCCCCEEEEecCC-CeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCC
Q 040370           18 DTHNVRSVSFHPSGDFLLAGTDH-PIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVS   96 (228)
Q Consensus        18 ~~~~v~~~~~~~~~~~l~~~~~d-~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~   96 (228)
                      ...+|..++|+..|+.||.|+.. |++-||+.++...+...+   +| ...+++++++|||++++||++||.|+|||.++
T Consensus       306 s~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQ---gH-~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~S  381 (893)
T KOG0291|consen  306 SDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQ---GH-SDRITSLAYSPDGQLIATGAEDGKVKVWNTQS  381 (893)
T ss_pred             ccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeecc---cc-ccceeeEEECCCCcEEEeccCCCcEEEEeccC
Confidence            34789999999999999988764 899999999876554443   23 78899999999999999999999999999999


Q ss_pred             CceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCC
Q 040370           97 ANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSN  176 (228)
Q Consensus        97 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  176 (228)
                      +-+..++..|  ...|+.+.|+..++.+++.+-||+|+.||+...+.-+++..+ .+....+++..|.|..+.+++.+.-
T Consensus       382 gfC~vTFteH--ts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P-~p~QfscvavD~sGelV~AG~~d~F  458 (893)
T KOG0291|consen  382 GFCFVTFTEH--TSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSP-EPIQFSCVAVDPSGELVCAGAQDSF  458 (893)
T ss_pred             ceEEEEeccC--CCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCC-CceeeeEEEEcCCCCEEEeeccceE
Confidence            9999999987  789999999999999999999999999999999999888765 3455677888999999998877667


Q ss_pred             eEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370          177 EIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEI  227 (228)
Q Consensus       177 ~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~  227 (228)
                      .|.+|++++|+.+-.+ .+|++||.+++|+|++..|+++|.|.+|++||+.
T Consensus       459 ~IfvWS~qTGqllDiL-sGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if  508 (893)
T KOG0291|consen  459 EIFVWSVQTGQLLDIL-SGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIF  508 (893)
T ss_pred             EEEEEEeecCeeeehh-cCCCCcceeeEEccccCeEEeccccceEEEEEee
Confidence            8999999999999888 8999999999999999999999999999999974

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=3.9e-35  Score=220.68  Aligned_cols=216  Identities=14%  Similarity=0.341  Sum_probs=189.3

Q ss_pred             CCcCCccccceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeE
Q 040370            1 FFDFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMY   80 (228)
Q Consensus         1 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l   80 (228)
                      ||++...  .-+++..+|...+++++++|||+++|+|++||.|+|||..++-|..++..+    .+.|+.+.|+..++.+
T Consensus       334 VweWqsE--sYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteH----ts~Vt~v~f~~~g~~l  407 (893)
T KOG0291|consen  334 VWEWQSE--SYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEH----TSGVTAVQFTARGNVL  407 (893)
T ss_pred             EEEeecc--ceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccC----CCceEEEEEEecCCEE
Confidence            4565532  345666789999999999999999999999999999999999998888754    8899999999999999


Q ss_pred             EEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCC-eEEEEEccCCeeEEEEecceeeeeeeEE
Q 040370           81 VTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDS-TVKLWEVSSGRLVKQYLGATHTQLRFQA  159 (228)
Q Consensus        81 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~-~i~~wd~~~~~~~~~~~~~~~~~~~~~~  159 (228)
                      ++++-||+|+.||+...+..+++..+. +....|++..|.|..+++|+.|. .|++|++.+|+.+..+.+  |+.++..+
T Consensus       408 lssSLDGtVRAwDlkRYrNfRTft~P~-p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsG--HEgPVs~l  484 (893)
T KOG0291|consen  408 LSSSLDGTVRAWDLKRYRNFRTFTSPE-PIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSG--HEGPVSGL  484 (893)
T ss_pred             EEeecCCeEEeeeecccceeeeecCCC-ceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcC--CCCcceee
Confidence            999999999999999999999998865 66778999999999999999887 599999999999999988  88999999


Q ss_pred             EECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370          160 VFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEI  227 (228)
Q Consensus       160 ~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~  227 (228)
                      +|+|.+..+++ ++.|.+|++||+-........ ..+...+..++|+|+|+.|+++..||.|.+||..
T Consensus       485 ~f~~~~~~LaS-~SWDkTVRiW~if~s~~~vEt-l~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~  550 (893)
T KOG0291|consen  485 SFSPDGSLLAS-GSWDKTVRIWDIFSSSGTVET-LEIRSDVLAVSFRPDGKELAVATLDGQITFFDIK  550 (893)
T ss_pred             EEccccCeEEe-ccccceEEEEEeeccCceeee-EeeccceeEEEEcCCCCeEEEEEecceEEEEEhh
Confidence            99999996666 666999999998665433333 2567789999999999999999999999999964

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=9.1e-37  Score=218.70  Aligned_cols=215  Identities=20%  Similarity=0.329  Sum_probs=184.1

Q ss_pred             CCcCCccccceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCC-Ce
Q 040370            1 FFDFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTG-GM   79 (228)
Q Consensus         1 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~   79 (228)
                      ||++.. ....+..+.+|..+|.+++|+++|..|++++.|+.|++||.++|++...+..     ...++|+.|+|++ +.
T Consensus       241 lW~vy~-~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~-----~~~~~cvkf~pd~~n~  314 (503)
T KOG0282|consen  241 LWNVYD-DRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHL-----DKVPTCVKFHPDNQNI  314 (503)
T ss_pred             EEEEec-CcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEec-----CCCceeeecCCCCCcE
Confidence            466554 3344556679999999999999999999999999999999999999887765     6678999999988 79


Q ss_pred             EEEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEE--------------
Q 040370           80 YVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVK--------------  145 (228)
Q Consensus        80 l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~--------------  145 (228)
                      |++|+.|+.|+.||+++++.++.+..|  -+.|..+.|-+++.++++.+.|+++++|+.+.+-.+.              
T Consensus       315 fl~G~sd~ki~~wDiRs~kvvqeYd~h--Lg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~  392 (503)
T KOG0282|consen  315 FLVGGSDKKIRQWDIRSGKVVQEYDRH--LGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLT  392 (503)
T ss_pred             EEEecCCCcEEEEeccchHHHHHHHhh--hhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCccee
Confidence            999999999999999999988887665  7799999999999999999999999999986543211              


Q ss_pred             --------------------------------EEecceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEee
Q 040370          146 --------------------------------QYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWS  193 (228)
Q Consensus       146 --------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~  193 (228)
                                                      .++++......+.+.|+|+|.+++++.+ ||.+.+||.++-+.+..+ 
T Consensus       393 ~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGds-dG~v~~wdwkt~kl~~~l-  470 (503)
T KOG0282|consen  393 LHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDS-DGKVNFWDWKTTKLVSKL-  470 (503)
T ss_pred             cCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecC-CccEEEeechhhhhhhcc-
Confidence                                            1223334555678899999999999766 799999999999999988 


Q ss_pred             cCCCCCcEEEEeCC-CCcEEEEecCCCCEEEee
Q 040370          194 SNHIGAPRWIEHSP-AEAAFITCGTDRSVRFWK  225 (228)
Q Consensus       194 ~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~vwd  225 (228)
                      ..|.+++..+.|+| ....+||||.||.|++|+
T Consensus       471 kah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd  503 (503)
T KOG0282|consen  471 KAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD  503 (503)
T ss_pred             ccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence            78999999999999 456899999999999996

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=5.2e-35  Score=194.07  Aligned_cols=207  Identities=19%  Similarity=0.346  Sum_probs=172.6

Q ss_pred             eeEEEeecC-cceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeE
Q 040370           11 RAFRVIQDT-HNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAI   89 (228)
Q Consensus        11 ~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v   89 (228)
                      .+.+.+.|. +.|+.+...|+++.||+++. ..|++||+.++... ......+| .+.|+++.|..+|+.+++|++||++
T Consensus        31 ~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~-Pv~t~e~h-~kNVtaVgF~~dgrWMyTgseDgt~  107 (311)
T KOG0315|consen   31 ICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPN-PVATFEGH-TKNVTAVGFQCDGRWMYTGSEDGTV  107 (311)
T ss_pred             eEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCC-ceeEEecc-CCceEEEEEeecCeEEEecCCCceE
Confidence            455555664 68999999999999998885 57999999987753 22222333 7889999999999999999999999


Q ss_pred             EEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEE
Q 040370           90 RLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVL  169 (228)
Q Consensus        90 ~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (228)
                      +|||++.....+.+..   ..+|+++..+|+...|++|..+|.|++||+.+......+... ....+.++...|+|.+++
T Consensus       108 kIWdlR~~~~qR~~~~---~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe-~~~~i~sl~v~~dgsml~  183 (311)
T KOG0315|consen  108 KIWDLRSLSCQRNYQH---NSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPE-DDTSIQSLTVMPDGSMLA  183 (311)
T ss_pred             EEEeccCcccchhccC---CCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCC-CCcceeeEEEcCCCcEEE
Confidence            9999999666655543   689999999999999999999999999999987666665432 456788999999999999


Q ss_pred             EeeCCCCeEEEEEcCCcc------eeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeee
Q 040370          170 SIDEPSNEIVIWDALTAE------KVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKE  226 (228)
Q Consensus       170 ~~~~~d~~i~i~d~~~~~------~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~  226 (228)
                      +... .|..++|++-+..      ++.++ ..|.+.+..+.+||++++|+++|.|.+++||+.
T Consensus       184 a~nn-kG~cyvW~l~~~~~~s~l~P~~k~-~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~  244 (311)
T KOG0315|consen  184 AANN-KGNCYVWRLLNHQTASELEPVHKF-QAHNGHILRCLLSPDVKYLATCSSDKTVKIWNT  244 (311)
T ss_pred             EecC-CccEEEEEccCCCccccceEhhhe-ecccceEEEEEECCCCcEEEeecCCceEEEEec
Confidence            9777 5999999987643      33334 689999999999999999999999999999986

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=7.3e-36  Score=207.41  Aligned_cols=217  Identities=21%  Similarity=0.361  Sum_probs=183.7

Q ss_pred             CCcCCccccceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeE
Q 040370            1 FFDFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMY   80 (228)
Q Consensus         1 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l   80 (228)
                      +||+.+++.  ...+.+|...+..++|+..|+++++++.|-.+++||.++..  ...+...+| ...|.+++|-|.|.++
T Consensus       134 v~D~~tg~~--e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~--~c~ks~~gh-~h~vS~V~f~P~gd~i  208 (406)
T KOG0295|consen  134 VFDTETGEL--ERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFF--RCIKSLIGH-EHGVSSVFFLPLGDHI  208 (406)
T ss_pred             EEEccchhh--hhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHH--HHHHHhcCc-ccceeeEEEEecCCee
Confidence            366665554  44456899999999999999999999999999999998732  122222233 7789999999999999


Q ss_pred             EEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEE
Q 040370           81 VTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAV  160 (228)
Q Consensus        81 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~  160 (228)
                      ++++.|.+|+.|++.++-++.++..|  ...+..++.+.||..+++++.|.++++|-+.++++...+..  |...+.++.
T Consensus       209 lS~srD~tik~We~~tg~cv~t~~~h--~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~--hEh~vEci~  284 (406)
T KOG0295|consen  209 LSCSRDNTIKAWECDTGYCVKTFPGH--SEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELRE--HEHPVECIA  284 (406)
T ss_pred             eecccccceeEEecccceeEEeccCc--hHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhc--cccceEEEE
Confidence            99999999999999999999999987  66999999999999999999999999999999877777766  444455555


Q ss_pred             ECCC--------------CcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeee
Q 040370          161 FNDT--------------EEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKE  226 (228)
Q Consensus       161 ~~~~--------------~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~  226 (228)
                      |.|.              +..++.+++.|++|++||+.++.++.++ .+|.+.|..++|+|.|+||+++.+|+++++||+
T Consensus       285 wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL-~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl  363 (406)
T KOG0295|consen  285 WAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTL-VGHDNWVRGVAFSPGGKYILSCADDKTLRVWDL  363 (406)
T ss_pred             ecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEE-ecccceeeeeEEcCCCeEEEEEecCCcEEEEEe
Confidence            5432              2346666788999999999999999999 799999999999999999999999999999997


Q ss_pred             c
Q 040370          227 I  227 (228)
Q Consensus       227 ~  227 (228)
                      .
T Consensus       364 ~  364 (406)
T KOG0295|consen  364 K  364 (406)
T ss_pred             c
Confidence            4

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=6e-35  Score=208.96  Aligned_cols=207  Identities=17%  Similarity=0.311  Sum_probs=180.1

Q ss_pred             eeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEE
Q 040370           11 RAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIR   90 (228)
Q Consensus        11 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~   90 (228)
                      ....+..|.++|.++.|+..|.+|++++.|+++.+||..+++..+.+...    ..+-..+.|-.+ ..|++++.||.|+
T Consensus       268 l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~----s~~~lDVdW~~~-~~F~ts~td~~i~  342 (524)
T KOG0273|consen  268 LISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFH----SAPALDVDWQSN-DEFATSSTDGCIH  342 (524)
T ss_pred             hhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeec----cCCccceEEecC-ceEeecCCCceEE
Confidence            34455579999999999999999999999999999999999887766653    445577888744 4699999999999


Q ss_pred             EEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCC-----
Q 040370           91 LWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTE-----  165 (228)
Q Consensus        91 iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----  165 (228)
                      |+.+....+..++.+|  ..+|.++.|+|.+.+|++++.|+++++|..........+..  |...++.+.|+|.+     
T Consensus       343 V~kv~~~~P~~t~~GH--~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~--Hskei~t~~wsp~g~v~~n  418 (524)
T KOG0273|consen  343 VCKVGEDRPVKTFIGH--HGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQA--HSKEIYTIKWSPTGPVTSN  418 (524)
T ss_pred             EEEecCCCcceeeecc--cCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhh--hccceeeEeecCCCCccCC
Confidence            9999999999999985  67999999999999999999999999999988888888776  67778888887754     


Q ss_pred             ---cEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370          166 ---EFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEI  227 (228)
Q Consensus       166 ---~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~  227 (228)
                         ...+++++.|++|++||+..+.++..+ ..|..+|.+++|+|+++++|+|+.||.|.+|+..
T Consensus       419 ~~~~~~l~sas~dstV~lwdv~~gv~i~~f-~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~  482 (524)
T KOG0273|consen  419 PNMNLMLASASFDSTVKLWDVESGVPIHTL-MKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTK  482 (524)
T ss_pred             CcCCceEEEeecCCeEEEEEccCCceeEee-ccCCCceEEEEecCCCcEEEecCCCCeeEecccc
Confidence               234444555899999999999999998 7899999999999999999999999999999864

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.1e-35  Score=209.93  Aligned_cols=210  Identities=15%  Similarity=0.305  Sum_probs=169.1

Q ss_pred             EEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEe
Q 040370           14 RVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWD   93 (228)
Q Consensus        14 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd   93 (228)
                      .+..|+.+|.-+.||++|++||+++.|.+..+|.+.............+| ..+|..+.||||.+++++|+.|..+.+||
T Consensus       219 il~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh-~~~V~yi~wSPDdryLlaCg~~e~~~lwD  297 (519)
T KOG0293|consen  219 ILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGH-SQPVSYIMWSPDDRYLLACGFDEVLSLWD  297 (519)
T ss_pred             hHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecc-cCceEEEEECCCCCeEEecCchHheeecc
Confidence            34479999999999999999999999999999998776655545555555 88999999999999999999999999999


Q ss_pred             CCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCC----------------------eeE-------
Q 040370           94 GVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSG----------------------RLV-------  144 (228)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~----------------------~~~-------  144 (228)
                      +.+|.....+... ....+.+++|.|||..+++|+.|+++..||+...                      +.+       
T Consensus       298 v~tgd~~~~y~~~-~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~  376 (519)
T KOG0293|consen  298 VDTGDLRHLYPSG-LGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDK  376 (519)
T ss_pred             CCcchhhhhcccC-cCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhcccccccceeEEEEEcCCCcEEEEEeccc
Confidence            9999988877654 3678889999999999999999999888877421                      000       


Q ss_pred             ------------------------------------------------------EEEecceeeeeeeEEEECCCCcEEEE
Q 040370          145 ------------------------------------------------------KQYLGATHTQLRFQAVFNDTEEFVLS  170 (228)
Q Consensus       145 ------------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (228)
                                                                            .++.++.....+...+|......+++
T Consensus       377 ~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fia  456 (519)
T KOG0293|consen  377 KIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIA  456 (519)
T ss_pred             ceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEE
Confidence                                                                  00111112223334445444545666


Q ss_pred             eeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCC-CCcEEEEecCCCCEEEeee
Q 040370          171 IDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSP-AEAAFITCGTDRSVRFWKE  226 (228)
Q Consensus       171 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~vwd~  226 (228)
                      +|++|+.|+||+..+++++..+ .+|...|++++|+| +..++|++|.||+|+||.+
T Consensus       457 SGSED~kvyIWhr~sgkll~~L-sGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~  512 (519)
T KOG0293|consen  457 SGSEDSKVYIWHRISGKLLAVL-SGHSKTVNCVSWNPADPEMFASASDDGTIRIWGP  512 (519)
T ss_pred             ecCCCceEEEEEccCCceeEee-cCCcceeeEEecCCCCHHHhhccCCCCeEEEecC
Confidence            7888999999999999999999 89999999999999 6678999999999999975

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=9.2e-35  Score=193.37  Aligned_cols=214  Identities=19%  Similarity=0.266  Sum_probs=177.7

Q ss_pred             cccceeEEEeecCcceEEEEEeC-CCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCC-CCCeEEEEe
Q 040370            7 ATAKRAFRVIQDTHNVRSVSFHP-SGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSS-TGGMYVTAS   84 (228)
Q Consensus         7 ~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~   84 (228)
                      +..........-.+.+..++|++ ..+.+++++.||++++||+....  ..+...+.| ...|.++.|++ .++.++++|
T Consensus        48 ~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s--~Pi~~~kEH-~~EV~Svdwn~~~r~~~ltsS  124 (311)
T KOG0277|consen   48 PKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPS--KPIHKFKEH-KREVYSVDWNTVRRRIFLTSS  124 (311)
T ss_pred             CCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccCCCC--cchhHHHhh-hhheEEeccccccceeEEeec
Confidence            33444445556678999999999 45678889999999999964432  233333344 88999999998 566888999


Q ss_pred             cCCeEEEEeCCCCceeeEEecccccceeEEEEECC-CCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECC
Q 040370           85 KDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTK-DQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFND  163 (228)
Q Consensus        85 ~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (228)
                      .|++|++|+...++.+.++.+|  ...|...+|+| ..+.+++++.|+.+++||++.......+..  |...+.++.|+.
T Consensus       125 WD~TiKLW~~~r~~Sv~Tf~gh--~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~a--h~~Eil~cdw~k  200 (311)
T KOG0277|consen  125 WDGTIKLWDPNRPNSVQTFNGH--NSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEA--HNSEILCCDWSK  200 (311)
T ss_pred             cCCceEeecCCCCcceEeecCC--ccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEe--ccceeEeecccc
Confidence            9999999999999999999886  78999999999 778999999999999999997655555655  567889999999


Q ss_pred             CCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCC-CcEEEEecCCCCEEEeeec
Q 040370          164 TEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPA-EAAFITCGTDRSVRFWKEI  227 (228)
Q Consensus       164 ~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~s~~~dg~i~vwd~~  227 (228)
                      ...+++++++.|+.|+.||+++.+.......+|.-.|..++|||. ...|++++.|-+++|||..
T Consensus       201 y~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~  265 (311)
T KOG0277|consen  201 YNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPE  265 (311)
T ss_pred             cCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccc
Confidence            999999999999999999999877655444899999999999994 5689999999999999964

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=1.4e-33  Score=196.23  Aligned_cols=216  Identities=18%  Similarity=0.281  Sum_probs=185.8

Q ss_pred             CCcCCccccceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeE
Q 040370            1 FFDFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMY   80 (228)
Q Consensus         1 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l   80 (228)
                      ||+.....  ...++.+|...|+++.|+.+|.+||+|.-+|.|+||+..++.....+...    -..|.-+.|+|.+..|
T Consensus        90 lW~~~~ge--~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e----~~dieWl~WHp~a~il  163 (399)
T KOG0296|consen   90 LWDISTGE--FAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQE----VEDIEWLKWHPRAHIL  163 (399)
T ss_pred             EEEccCCc--ceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecc----cCceEEEEecccccEE
Confidence            57777555  67888899999999999999999999999999999999998876666422    5678899999999999


Q ss_pred             EEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecc----------
Q 040370           81 VTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGA----------  150 (228)
Q Consensus        81 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~----------  150 (228)
                      ++|+.||.+.+|.+.++...+.+.+|  ..++++=.|.|+|+.++++..||+|++|++.+++++..+...          
T Consensus       164 lAG~~DGsvWmw~ip~~~~~kv~~Gh--~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~  241 (399)
T KOG0296|consen  164 LAGSTDGSVWMWQIPSQALCKVMSGH--NSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISL  241 (399)
T ss_pred             EeecCCCcEEEEECCCcceeeEecCC--CCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCcccc
Confidence            99999999999999998888888886  789999999999999999999999999999988776554410          


Q ss_pred             --------------------------------------------------------------------------------
Q 040370          151 --------------------------------------------------------------------------------  150 (228)
Q Consensus       151 --------------------------------------------------------------------------------  150 (228)
                                                                                                      
T Consensus       242 ~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R  321 (399)
T KOG0296|consen  242 NLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLR  321 (399)
T ss_pred             ccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhh
Confidence                                                                                            


Q ss_pred             ---eeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370          151 ---THTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEI  227 (228)
Q Consensus       151 ---~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~  227 (228)
                         .|...+..+.|-+ ..++++++. ||.|+.||.|+|+....+ .+|...|.+++++|+.++++|+|.|++.+||+..
T Consensus       322 ~~c~he~~V~~l~w~~-t~~l~t~c~-~g~v~~wDaRtG~l~~~y-~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~  398 (399)
T KOG0296|consen  322 HICEHEDGVTKLKWLN-TDYLLTACA-NGKVRQWDARTGQLKFTY-TGHQMGILDFALSPQKRLVVTVSDDNTALVFEVP  398 (399)
T ss_pred             eeccCCCceEEEEEcC-cchheeecc-CceEEeeeccccceEEEE-ecCchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence               0123344556666 667777666 799999999999999998 8999999999999999999999999999999863

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.4e-34  Score=213.90  Aligned_cols=214  Identities=21%  Similarity=0.341  Sum_probs=187.1

Q ss_pred             CCcCCccccceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeE
Q 040370            1 FFDFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMY   80 (228)
Q Consensus         1 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l   80 (228)
                      |||.++...-+.++.  ...||++..|-+..+.+++|++|..|+||+..+++.+..+..+    ...|++++.+|...++
T Consensus        39 IWnyetqtmVksfeV--~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH----~DyIR~iavHPt~P~v  112 (794)
T KOG0276|consen   39 IWNYETQTMVKSFEV--SEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAH----SDYIRSIAVHPTLPYV  112 (794)
T ss_pred             EEecccceeeeeeee--cccchhhheeeeccceEEEecCCceEEEEecccceeeEEeecc----ccceeeeeecCCCCeE
Confidence            577775554444443  5679999999999999999999999999999999988777643    8899999999999999


Q ss_pred             EEEecCCeEEEEeCCCC-ceeeEEecccccceeEEEEECC-CCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeE
Q 040370           81 VTASKDGAIRLWDGVSA-NCVRSIVGAHGTAEATSANFTK-DQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQ  158 (228)
Q Consensus        81 ~~~~~dg~v~iwd~~~~-~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~  158 (228)
                      +|+|.|-+|++||.+.+ .+.+.+.+|  .-.|++++|+| |.+.+++++-|++|++|.+.+..+..++++  |...+.+
T Consensus       113 LtsSDDm~iKlW~we~~wa~~qtfeGH--~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~g--HekGVN~  188 (794)
T KOG0276|consen  113 LTSSDDMTIKLWDWENEWACEQTFEGH--EHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEG--HEKGVNC  188 (794)
T ss_pred             EecCCccEEEEeeccCceeeeeEEcCc--ceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeec--cccCcce
Confidence            99999999999999865 567788887  56899999999 778999999999999999999989999987  6677778


Q ss_pred             EEECCCC--cEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeee
Q 040370          159 AVFNDTE--EFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKE  226 (228)
Q Consensus       159 ~~~~~~~--~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~  226 (228)
                      +.+-+.+  +++++ |++|..+++||..+..++.++ .+|...|+.+.|+|.-..++|||+||+++||..
T Consensus       189 Vdyy~~gdkpylIs-gaDD~tiKvWDyQtk~CV~TL-eGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs  256 (794)
T KOG0276|consen  189 VDYYTGGDKPYLIS-GADDLTIKVWDYQTKSCVQTL-EGHTNNVSFVFFHPELPIIISGSEDGTVRIWNS  256 (794)
T ss_pred             EEeccCCCcceEEe-cCCCceEEEeecchHHHHHHh-hcccccceEEEecCCCcEEEEecCCccEEEecC
Confidence            8776654  67776 555899999999999999998 899999999999999999999999999999974

>PTZ00420 coronin; Provisional

Probab=100.00  E-value=7.5e-33  Score=211.81  Aligned_cols=213  Identities=9%  Similarity=0.181  Sum_probs=162.2

Q ss_pred             eeEEEeecCcceEEEEEeCC-CCEEEEecCCCeEEEEEcccceE-Eee----eccceeeeccceeeEEeCCCCCe-EEEE
Q 040370           11 RAFRVIQDTHNVRSVSFHPS-GDFLLAGTDHPIAHLYDVNTFQC-YLS----ANVPEISVNGAINQVRYSSTGGM-YVTA   83 (228)
Q Consensus        11 ~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~vw~~~~~~~-~~~----~~~~~~~~~~~i~~~~~~~~~~~-l~~~   83 (228)
                      ....+.+|..+|.+++|+|+ +.+|++|+.|+.|+|||+.++.. ...    ..... .|...|.+++|+|++.. ++++
T Consensus        66 ~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~-gH~~~V~sVaf~P~g~~iLaSg  144 (568)
T PTZ00420         66 PVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILK-GHKKKISIIDWNPMNYYIMCSS  144 (568)
T ss_pred             eEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEee-cCCCcEEEEEECCCCCeEEEEE
Confidence            44566789999999999996 78999999999999999986431 111    11112 23789999999998875 5789


Q ss_pred             ecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeee---eeeEEE
Q 040370           84 SKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQ---LRFQAV  160 (228)
Q Consensus        84 ~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~---~~~~~~  160 (228)
                      +.|+.|++||+++++....+..   ...|.+++|+|+|.+|++++.|+.|++||+++++.+..+.+|....   .+....
T Consensus       145 S~DgtIrIWDl~tg~~~~~i~~---~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~  221 (568)
T PTZ00420        145 GFDSFVNIWDIENEKRAFQINM---PKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDG  221 (568)
T ss_pred             eCCCeEEEEECCCCcEEEEEec---CCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeee
Confidence            9999999999999987766642   4679999999999999999999999999999999888887753321   122234


Q ss_pred             ECCCCcEEEEeeCCC---CeEEEEEcCC-cceeEEee-cCCCCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370          161 FNDTEEFVLSIDEPS---NEIVIWDALT-AEKVAKWS-SNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEI  227 (228)
Q Consensus       161 ~~~~~~~~~~~~~~d---~~i~i~d~~~-~~~~~~~~-~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~  227 (228)
                      |++++.+++++|..+   +.|++||+++ ++++.... ..+.+.+......+++.++++|+.|+.|++|++.
T Consensus       222 fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~  293 (568)
T PTZ00420        222 LGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHS  293 (568)
T ss_pred             EcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEcc
Confidence            568889999988743   4799999996 44454431 2233333444445578899999999999999974

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1.3e-34  Score=217.15  Aligned_cols=208  Identities=23%  Similarity=0.344  Sum_probs=185.2

Q ss_pred             eEEEeecCcceEEEEEeCC-CCEEEEecCCCeEEEEEcccceEEee-----eccceeeeccceeeEEeCCCCCeEEEEec
Q 040370           12 AFRVIQDTHNVRSVSFHPS-GDFLLAGTDHPIAHLYDVNTFQCYLS-----ANVPEISVNGAINQVRYSSTGGMYVTASK   85 (228)
Q Consensus        12 ~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~vw~~~~~~~~~~-----~~~~~~~~~~~i~~~~~~~~~~~l~~~~~   85 (228)
                      .....+|+..|.+++++.. ..+|++++.|.++++|++...+....     .+.....|...|+|++.+|+.++++|||.
T Consensus       404 ~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~Sq  483 (775)
T KOG0319|consen  404 VAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQ  483 (775)
T ss_pred             hhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEeccc
Confidence            3345689999999999874 46889999999999999987332111     11112234889999999999999999999


Q ss_pred             CCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCC
Q 040370           86 DGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTE  165 (228)
Q Consensus        86 dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (228)
                      |.+.+||+++..+....+.+|  ...+.++.|+|..+.++|++.|++|++|.+.+..++.++.+  |...+..+.|-.++
T Consensus       484 DktaKiW~le~~~l~~vLsGH--~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eG--H~~aVlra~F~~~~  559 (775)
T KOG0319|consen  484 DKTAKIWDLEQLRLLGVLSGH--TRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEG--HTSAVLRASFIRNG  559 (775)
T ss_pred             ccceeeecccCceEEEEeeCC--ccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecC--ccceeEeeeeeeCC
Confidence            999999999999999999987  78999999999999999999999999999999999999998  78889999999999


Q ss_pred             cEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEee
Q 040370          166 EFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWK  225 (228)
Q Consensus       166 ~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd  225 (228)
                      ..++++++ ||-+++|+++++++..++ ..|+..|.+++.+|....++||+.||.|.+|.
T Consensus       560 ~qliS~~a-dGliKlWnikt~eC~~tl-D~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wk  617 (775)
T KOG0319|consen  560 KQLISAGA-DGLIKLWNIKTNECEMTL-DAHNDRVWALSVSPLLDMFVTGGGDGRIIFWK  617 (775)
T ss_pred             cEEEeccC-CCcEEEEeccchhhhhhh-hhccceeEEEeecCccceeEecCCCeEEEEee
Confidence            99999888 799999999999999999 89999999999999999999999999999996

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=100.00  E-value=7.7e-35  Score=193.56  Aligned_cols=204  Identities=22%  Similarity=0.405  Sum_probs=176.4

Q ss_pred             EEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEE
Q 040370           13 FRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLW   92 (228)
Q Consensus        13 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw   92 (228)
                      +..+.|..-|.+++|+.|.++|++|+.+..++|+|++..+.  ......+| .+.|..+.|....+.|++++.|++|++|
T Consensus        94 lhsf~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~A--pp~E~~gh-tg~Ir~v~wc~eD~~iLSSadd~tVRLW  170 (334)
T KOG0278|consen   94 LHSFEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKA--PPKEISGH-TGGIRTVLWCHEDKCILSSADDKTVRLW  170 (334)
T ss_pred             hhhhhhhheeeeEEecccchhhhccchHHHhhhhhccCCCC--CchhhcCC-CCcceeEEEeccCceEEeeccCCceEEE
Confidence            34457999999999999999999999999999999987652  22333344 8899999999988999999999999999


Q ss_pred             eCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEee
Q 040370           93 DGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSID  172 (228)
Q Consensus        93 d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (228)
                      |.+++..++.+..   ..+|+++.++++|.+|.++ ..+.|++||..+...+..++.   +..+.+...+|+...+++ |
T Consensus       171 D~rTgt~v~sL~~---~s~VtSlEvs~dG~ilTia-~gssV~Fwdaksf~~lKs~k~---P~nV~SASL~P~k~~fVa-G  242 (334)
T KOG0278|consen  171 DHRTGTEVQSLEF---NSPVTSLEVSQDGRILTIA-YGSSVKFWDAKSFGLLKSYKM---PCNVESASLHPKKEFFVA-G  242 (334)
T ss_pred             EeccCcEEEEEec---CCCCcceeeccCCCEEEEe-cCceeEEeccccccceeeccC---ccccccccccCCCceEEe-c
Confidence            9999999999987   5689999999999876555 567899999999888887763   556778889999866665 5


Q ss_pred             CCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370          173 EPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEI  227 (228)
Q Consensus       173 ~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~  227 (228)
                      ++|..++.||..+++.+..+..+|.++|.|+.|+|+|...++||+||+|++|.+.
T Consensus       243 ged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~  297 (334)
T KOG0278|consen  243 GEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTT  297 (334)
T ss_pred             CcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEec
Confidence            5589999999999999988768999999999999999999999999999999864

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.1e-34  Score=191.63  Aligned_cols=217  Identities=21%  Similarity=0.319  Sum_probs=183.7

Q ss_pred             CCcCCccccceeEEEeecCcceEEEEEeC-CCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCC-CCC
Q 040370            1 FFDFSKATAKRAFRVIQDTHNVRSVSFHP-SGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSS-TGG   78 (228)
Q Consensus         1 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~   78 (228)
                      |||...+ ..++..+.+|..+|.++.|++ .+..+++++.|++|++|+...++.+.++..   | ...|...+|+| ..+
T Consensus        87 l~d~~~~-s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~g---h-~~~Iy~a~~sp~~~n  161 (311)
T KOG0277|consen   87 LFDLTMP-SKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNG---H-NSCIYQAAFSPHIPN  161 (311)
T ss_pred             EeccCCC-CcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecC---C-ccEEEEEecCCCCCC
Confidence            4674433 345666678999999999999 677788999999999999998887776543   3 88999999999 578


Q ss_pred             eEEEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECC-CCCEEEEeeCCCeEEEEEccCCe-eEEEEecceeeeee
Q 040370           79 MYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTK-DQRFVLSCGKDSTVKLWEVSSGR-LVKQYLGATHTQLR  156 (228)
Q Consensus        79 ~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~-~~~~~~~~~~~~~~  156 (228)
                      .++++|.|+++++||++.......+..|  ..++.++.|+. +.+.++||+.|+.|+.||+++.+ ++..+.+  |.-.+
T Consensus       162 lfas~Sgd~~l~lwdvr~~gk~~~i~ah--~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~g--h~~AV  237 (311)
T KOG0277|consen  162 LFASASGDGTLRLWDVRSPGKFMSIEAH--NSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNG--HGLAV  237 (311)
T ss_pred             eEEEccCCceEEEEEecCCCceeEEEec--cceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecC--CceEE
Confidence            9999999999999999976555557766  67999999998 77789999999999999999865 3455544  88899


Q ss_pred             eEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCC-CCcEEEEecCCCCEEEeee
Q 040370          157 FQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSP-AEAAFITCGTDRSVRFWKE  226 (228)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~vwd~  226 (228)
                      ..+.|+|....++++++.|-+++|||...+.........|..-+..+.|++ ++.++|+++.|+.++||+.
T Consensus       238 Rkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p  308 (311)
T KOG0277|consen  238 RKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP  308 (311)
T ss_pred             EEEecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence            999999999999999999999999999876665555478999999999998 6789999999999999985

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=1.6e-32  Score=199.14  Aligned_cols=217  Identities=17%  Similarity=0.221  Sum_probs=171.6

Q ss_pred             cceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCe
Q 040370            9 AKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGA   88 (228)
Q Consensus         9 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~   88 (228)
                      .+-......|..-|+|+.|+|||+++|+++.||.+.+||-.+++.+..+.....| ++.|.++.|+||++.++|++.|.+
T Consensus       180 FKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aH-kGsIfalsWsPDs~~~~T~SaDkt  258 (603)
T KOG0318|consen  180 FKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAH-KGSIFALSWSPDSTQFLTVSADKT  258 (603)
T ss_pred             eeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCc-cccEEEEEECCCCceEEEecCCce
Confidence            3444445579999999999999999999999999999999999988887764445 999999999999999999999999


Q ss_pred             EEEEeCCCCceeeEEecc-----------------------------------------cccceeEEEEECCCCCEEEEe
Q 040370           89 IRLWDGVSANCVRSIVGA-----------------------------------------HGTAEATSANFTKDQRFVLSC  127 (228)
Q Consensus        89 v~iwd~~~~~~~~~~~~~-----------------------------------------~~~~~i~~~~~~~~~~~l~~~  127 (228)
                      ++|||+.+.++++++...                                         .|...|+++..+|++++|++|
T Consensus       259 ~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~Sg  338 (603)
T KOG0318|consen  259 IKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSG  338 (603)
T ss_pred             EEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEee
Confidence            999998877665554211                                         124566777777777777777


Q ss_pred             eCCCeEEEEEcc--------------------------------------------------------------------
Q 040370          128 GKDSTVKLWEVS--------------------------------------------------------------------  139 (228)
Q Consensus       128 ~~d~~i~~wd~~--------------------------------------------------------------------  139 (228)
                      +.||.|.-||..                                                                    
T Consensus       339 syDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~  418 (603)
T KOG0318|consen  339 SYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGG  418 (603)
T ss_pred             ccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCC
Confidence            777777777542                                                                    


Q ss_pred             -------------------------------------------------------CCeeEEEEecceeeeeeeEEEECCC
Q 040370          140 -------------------------------------------------------SGRLVKQYLGATHTQLRFQAVFNDT  164 (228)
Q Consensus       140 -------------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~  164 (228)
                                                                             ............|...++.++++|+
T Consensus       419 ~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd  498 (603)
T KOG0318|consen  419 TAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPD  498 (603)
T ss_pred             EEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCC
Confidence                                                                   1111111112236678899999999


Q ss_pred             CcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370          165 EEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEI  227 (228)
Q Consensus       165 ~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~  227 (228)
                      +.|++++.. .+.+.+||..+.+.....-.-|...|.+++|+|+..++|||+.|..|.||++.
T Consensus       499 ~~yla~~Da-~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~  560 (603)
T KOG0318|consen  499 GAYLAAGDA-SRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVK  560 (603)
T ss_pred             CcEEEEecc-CCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEcc
Confidence            999999776 59999999998877444334599999999999999999999999999999863

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=3.1e-34  Score=205.78  Aligned_cols=206  Identities=20%  Similarity=0.421  Sum_probs=175.9

Q ss_pred             eeEEEeecCcceEEEEEeC-CCCEEEEecCCCeEEEEEccc-ceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCe
Q 040370           11 RAFRVIQDTHNVRSVSFHP-SGDFLLAGTDHPIAHLYDVNT-FQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGA   88 (228)
Q Consensus        11 ~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~vw~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~   88 (228)
                      ......+|+..|.++.|.| .+.+|++++.|+.|+||++-. +.++..+.   +| ..+|.+++|+++|..|++++.|+.
T Consensus       206 ~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~---gH-~k~Vrd~~~s~~g~~fLS~sfD~~  281 (503)
T KOG0282|consen  206 LSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFK---GH-RKPVRDASFNNCGTSFLSASFDRF  281 (503)
T ss_pred             heeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhh---cc-hhhhhhhhccccCCeeeeeeccee
Confidence            3456669999999999999 899999999999999999987 55655544   33 899999999999999999999999


Q ss_pred             EEEEeCCCCceeeEEecccccceeEEEEECCCC-CEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcE
Q 040370           89 IRLWDGVSANCVRSIVGAHGTAEATSANFTKDQ-RFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEF  167 (228)
Q Consensus        89 v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (228)
                      +++||+++|++...+..   ...++++.|+|++ +.+++|+.|+.|+.||+++++.++.+..  |-..+..+.|-+++..
T Consensus       282 lKlwDtETG~~~~~f~~---~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~--hLg~i~~i~F~~~g~r  356 (503)
T KOG0282|consen  282 LKLWDTETGQVLSRFHL---DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDR--HLGAILDITFVDEGRR  356 (503)
T ss_pred             eeeeccccceEEEEEec---CCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHh--hhhheeeeEEccCCce
Confidence            99999999999999977   5688999999988 8899999999999999999998888865  7788899999999999


Q ss_pred             EEEeeCCCCeEEEEEcCCcceeEEe---------------------------------------------ecCCC--CCc
Q 040370          168 VLSIDEPSNEIVIWDALTAEKVAKW---------------------------------------------SSNHI--GAP  200 (228)
Q Consensus       168 ~~~~~~~d~~i~i~d~~~~~~~~~~---------------------------------------------~~~~~--~~v  200 (228)
                      ++++.. |++++||+.+.+-.+...                                             ..+|.  +.-
T Consensus       357 FissSD-dks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys  435 (503)
T KOG0282|consen  357 FISSSD-DKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYS  435 (503)
T ss_pred             Eeeecc-CccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCce
Confidence            998665 799999998654221110                                             12443  345


Q ss_pred             EEEEeCCCCcEEEEecCCCCEEEeee
Q 040370          201 RWIEHSPAEAAFITCGTDRSVRFWKE  226 (228)
Q Consensus       201 ~~~~~~~~~~~l~s~~~dg~i~vwd~  226 (228)
                      ..+.|||||.+|++|+.||.+.+||-
T Consensus       436 ~~v~fSpDG~~l~SGdsdG~v~~wdw  461 (503)
T KOG0282|consen  436 CQVDFSPDGRTLCSGDSDGKVNFWDW  461 (503)
T ss_pred             eeEEEcCCCCeEEeecCCccEEEeec
Confidence            67899999999999999999999995

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=7.1e-35  Score=202.23  Aligned_cols=205  Identities=22%  Similarity=0.374  Sum_probs=168.1

Q ss_pred             CCcCCccccceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeE
Q 040370            1 FFDFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMY   80 (228)
Q Consensus         1 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l   80 (228)
                      |||.++.  .....+.+|++.|.|+.|  +.+.+++|+.|.+|+|||.++++++..+.    ||...|..+.|+  ..++
T Consensus       221 iWD~n~~--~c~~~L~GHtGSVLCLqy--d~rviisGSSDsTvrvWDv~tge~l~tli----hHceaVLhlrf~--ng~m  290 (499)
T KOG0281|consen  221 IWDKNSL--ECLKILTGHTGSVLCLQY--DERVIVSGSSDSTVRVWDVNTGEPLNTLI----HHCEAVLHLRFS--NGYM  290 (499)
T ss_pred             EeccccH--HHHHhhhcCCCcEEeeec--cceEEEecCCCceEEEEeccCCchhhHHh----hhcceeEEEEEe--CCEE
Confidence            4666633  334456699999999999  56799999999999999999999876654    448899999997  5689


Q ss_pred             EEEecCCeEEEEeCCCCce---eeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeee
Q 040370           81 VTASKDGAIRLWDGVSANC---VRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRF  157 (228)
Q Consensus        81 ~~~~~dg~v~iwd~~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~  157 (228)
                      ++++.|.++.+||+.+...   .+.+.+|  ...|+.+.|+  .+++++++.|.+|++|++.+++.++++.+  |...+.
T Consensus       291 vtcSkDrsiaVWdm~sps~it~rrVLvGH--rAaVNvVdfd--~kyIVsASgDRTikvW~~st~efvRtl~g--HkRGIA  364 (499)
T KOG0281|consen  291 VTCSKDRSIAVWDMASPTDITLRRVLVGH--RAAVNVVDFD--DKYIVSASGDRTIKVWSTSTCEFVRTLNG--HKRGIA  364 (499)
T ss_pred             EEecCCceeEEEeccCchHHHHHHHHhhh--hhheeeeccc--cceEEEecCCceEEEEeccceeeehhhhc--ccccce
Confidence            9999999999999987642   2344454  7789999886  56999999999999999999999999987  444444


Q ss_pred             EEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370          158 QAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEI  227 (228)
Q Consensus       158 ~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~  227 (228)
                      ++.+  .+++++ +|+.|.+|++||+..|.++..+ .+|+.-|.++.|  +.+.+++|+.||+|++||+.
T Consensus       365 ClQY--r~rlvV-SGSSDntIRlwdi~~G~cLRvL-eGHEeLvRciRF--d~krIVSGaYDGkikvWdl~  428 (499)
T KOG0281|consen  365 CLQY--RDRLVV-SGSSDNTIRLWDIECGACLRVL-EGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLQ  428 (499)
T ss_pred             ehhc--cCeEEE-ecCCCceEEEEeccccHHHHHH-hchHHhhhheee--cCceeeeccccceEEEEecc
Confidence            4433  345555 4666999999999999999888 899999999999  56789999999999999974

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=3.3e-32  Score=220.80  Aligned_cols=205  Identities=13%  Similarity=0.288  Sum_probs=164.7

Q ss_pred             EeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEe---eeccceeeeccceeeEEeCC-CCCeEEEEecCCeEE
Q 040370           15 VIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYL---SANVPEISVNGAINQVRYSS-TGGMYVTASKDGAIR   90 (228)
Q Consensus        15 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~---~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~v~   90 (228)
                      +..|...|.+++|+|++++||+|+.|+.|+||+........   ........+...+.+++|+| .+.+|++++.||+|+
T Consensus       479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~~Dg~v~  558 (793)
T PLN00181        479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNFEGVVQ  558 (793)
T ss_pred             ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEEEeCCCeEE
Confidence            34589999999999999999999999999999976421000   00000111146789999987 478999999999999


Q ss_pred             EEeCCCCceeeEEecccccceeEEEEECC-CCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECC-CCcEE
Q 040370           91 LWDGVSANCVRSIVGAHGTAEATSANFTK-DQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFND-TEEFV  168 (228)
Q Consensus        91 iwd~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  168 (228)
                      +||+.+++.+..+..|  ...|.+++|+| ++.+|++|+.|+.|++||++++..+..+..   ...+.++.|.+ ++.++
T Consensus       559 lWd~~~~~~~~~~~~H--~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~---~~~v~~v~~~~~~g~~l  633 (793)
T PLN00181        559 VWDVARSQLVTEMKEH--EKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKT---KANICCVQFPSESGRSL  633 (793)
T ss_pred             EEECCCCeEEEEecCC--CCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEec---CCCeEEEEEeCCCCCEE
Confidence            9999999888888775  77899999997 788999999999999999999888877764   24567778855 56666


Q ss_pred             EEeeCCCCeEEEEEcCCcce-eEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370          169 LSIDEPSNEIVIWDALTAEK-VAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEI  227 (228)
Q Consensus       169 ~~~~~~d~~i~i~d~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~  227 (228)
                      ++ ++.|+.|++||+++.+. ...+ .+|...|.++.|. ++.+|++++.|+.|++||+.
T Consensus       634 at-gs~dg~I~iwD~~~~~~~~~~~-~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~  690 (793)
T PLN00181        634 AF-GSADHKVYYYDLRNPKLPLCTM-IGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLS  690 (793)
T ss_pred             EE-EeCCCeEEEEECCCCCccceEe-cCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCC
Confidence            65 55589999999988764 4444 6899999999997 67899999999999999974

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=8.4e-32  Score=194.43  Aligned_cols=213  Identities=27%  Similarity=0.485  Sum_probs=180.4

Q ss_pred             CCcCCccccceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeE
Q 040370            1 FFDFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMY   80 (228)
Q Consensus         1 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l   80 (228)
                      +||+...  +....+..|...|.++.|+|+++++++++.++.|.+||+.+++.......   + ...+.+++|+|++.++
T Consensus        77 i~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~---~-~~~i~~~~~~~~~~~l  150 (289)
T cd00200          77 LWDLETG--ECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRG---H-TDWVNSVAFSPDGTFV  150 (289)
T ss_pred             EEEcCcc--cceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEecc---C-CCcEEEEEEcCcCCEE
Confidence            3666543  33445557888999999999988999888899999999998776655542   2 6789999999998888


Q ss_pred             EEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEE
Q 040370           81 VTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAV  160 (228)
Q Consensus        81 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~  160 (228)
                      ++++.|+.|++||+++++....+..+  ...+.++.|+|+++.+++++.|+.+++||++.++.+..+..  +...+..+.
T Consensus       151 ~~~~~~~~i~i~d~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~--~~~~i~~~~  226 (289)
T cd00200         151 ASSSQDGTIKLWDLRTGKCVATLTGH--TGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRG--HENGVNSVA  226 (289)
T ss_pred             EEEcCCCcEEEEEccccccceeEecC--ccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhh--cCCceEEEE
Confidence            88888999999999988888887754  66899999999999999999999999999998888777754  556788899


Q ss_pred             ECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEee
Q 040370          161 FNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWK  225 (228)
Q Consensus       161 ~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd  225 (228)
                      ++|++.++++++ .|+.+++||+.+++....+ ..|...+.+++|+|++++|++++.||.+++|+
T Consensus       227 ~~~~~~~~~~~~-~~~~i~i~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~  289 (289)
T cd00200         227 FSPDGYLLASGS-EDGTIRVWDLRTGECVQTL-SGHTNSVTSLAWSPDGKRLASGSADGTIRIWD  289 (289)
T ss_pred             EcCCCcEEEEEc-CCCcEEEEEcCCceeEEEc-cccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence            999966666644 4799999999988888877 58889999999999999999999999999996

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=1.1e-31  Score=193.73  Aligned_cols=203  Identities=28%  Similarity=0.516  Sum_probs=176.2

Q ss_pred             EeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeC
Q 040370           15 VIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDG   94 (228)
Q Consensus        15 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~   94 (228)
                      +.+|..+|.+++|+|++++|++++.+|.+++|++.+++.......   + ...+..+.|+|+++.+++++.||.|++||+
T Consensus         5 ~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~---~-~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~   80 (289)
T cd00200           5 LKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKG---H-TGPVRDVAASADGTYLASGSSDKTIRLWDL   80 (289)
T ss_pred             hcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEec---C-CcceeEEEECCCCCEEEEEcCCCeEEEEEc
Confidence            447999999999999999999999999999999998765444332   2 667889999999999999999999999999


Q ss_pred             CCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCC
Q 040370           95 VSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEP  174 (228)
Q Consensus        95 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (228)
                      ++++....+..+  ...+.++.|+++++++++++.|+.+++||+++++....+..  +...+..+.++|++.++++++ .
T Consensus        81 ~~~~~~~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~-~  155 (289)
T cd00200          81 ETGECVRTLTGH--TSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRG--HTDWVNSVAFSPDGTFVASSS-Q  155 (289)
T ss_pred             CcccceEEEecc--CCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEecc--CCCcEEEEEEcCcCCEEEEEc-C
Confidence            988777777765  56899999999988888888899999999998888877764  566788999999977777655 4


Q ss_pred             CCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370          175 SNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEI  227 (228)
Q Consensus       175 d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~  227 (228)
                      |+.+++||+++++....+ ..|...+.++.|+|+++.+++++.|+.|++||+.
T Consensus       156 ~~~i~i~d~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~  207 (289)
T cd00200         156 DGTIKLWDLRTGKCVATL-TGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLS  207 (289)
T ss_pred             CCcEEEEEccccccceeE-ecCccccceEEECCCcCEEEEecCCCcEEEEECC
Confidence            799999999988888777 5788899999999999999999999999999974

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=3.1e-32  Score=182.75  Aligned_cols=211  Identities=16%  Similarity=0.312  Sum_probs=167.7

Q ss_pred             CccccceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEe
Q 040370            5 SKATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTAS   84 (228)
Q Consensus         5 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~   84 (228)
                      .....+..-.+.+|..+|.|++|+++|++||+++.|..|-||....+.........+.| ...|..+.|+|...+|++++
T Consensus        91 ~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~H-tqDVK~V~WHPt~dlL~S~S  169 (312)
T KOG0645|consen   91 EDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEH-TQDVKHVIWHPTEDLLFSCS  169 (312)
T ss_pred             CCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccc-cccccEEEEcCCcceeEEec
Confidence            33444556667799999999999999999999999999999999876655555555555 88999999999999999999


Q ss_pred             cCCeEEEEeCCC---CceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEE
Q 040370           85 KDGAIRLWDGVS---ANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVF  161 (228)
Q Consensus        85 ~dg~v~iwd~~~---~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~  161 (228)
                      .|.+|++|+-..   -++.+++..+  ...|.+++|++.|..|++++.|++++||-..+.     +. ..+...++.+.|
T Consensus       170 YDnTIk~~~~~~dddW~c~~tl~g~--~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~-----~~-~~~sr~~Y~v~W  241 (312)
T KOG0645|consen  170 YDNTIKVYRDEDDDDWECVQTLDGH--ENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTD-----LS-GMHSRALYDVPW  241 (312)
T ss_pred             cCCeEEEEeecCCCCeeEEEEecCc--cceEEEEEecCCCceEEEecCCcceEeeeeccC-----cc-hhcccceEeeee
Confidence            999999998662   3567778776  559999999999999999999999999986632     11 225556677777


Q ss_pred             CCCCcEEEEeeCCCCeEEEEEcCCc------ceeEEeecCCCCCcEEEEeCCC-CcEEEEecCCCCEEEeeec
Q 040370          162 NDTEEFVLSIDEPSNEIVIWDALTA------EKVAKWSSNHIGAPRWIEHSPA-EAAFITCGTDRSVRFWKEI  227 (228)
Q Consensus       162 ~~~~~~~~~~~~~d~~i~i~d~~~~------~~~~~~~~~~~~~v~~~~~~~~-~~~l~s~~~dg~i~vwd~~  227 (228)
                      .  ...++++++ |+.|++|.-...      +.+......|...|++++|.|. .++|++||.||.|++|.+.
T Consensus       242 ~--~~~IaS~gg-D~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~  311 (312)
T KOG0645|consen  242 D--NGVIASGGG-DDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE  311 (312)
T ss_pred             c--ccceEeccC-CCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence            7  445555555 899999976542      1222223579999999999994 7899999999999999875

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=4.1e-33  Score=193.82  Aligned_cols=212  Identities=18%  Similarity=0.304  Sum_probs=187.5

Q ss_pred             CCcCCccccceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeE
Q 040370            1 FFDFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMY   80 (228)
Q Consensus         1 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l   80 (228)
                      |||+..+  +..+.+.+|-..|..+++++-..|+++++.|+.|+.||++..+.+..+.   +| -+.|.|++.+|.-..|
T Consensus       177 IwDlatg--~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~Yh---GH-lS~V~~L~lhPTldvl  250 (460)
T KOG0285|consen  177 IWDLATG--QLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYH---GH-LSGVYCLDLHPTLDVL  250 (460)
T ss_pred             EEEcccC--eEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechhhhhHHHhc---cc-cceeEEEeccccceeE
Confidence            6888854  4456677899999999999999999999999999999999988665544   34 7889999999999999


Q ss_pred             EEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEE
Q 040370           81 VTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAV  160 (228)
Q Consensus        81 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~  160 (228)
                      ++|+.|.++++||+++...+..+.+|  ..+|..+.+.|....+++|+.|++|++||++.++....+..  |...+.+++
T Consensus       251 ~t~grDst~RvWDiRtr~~V~~l~GH--~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~--hkksvral~  326 (460)
T KOG0285|consen  251 VTGGRDSTIRVWDIRTRASVHVLSGH--TNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTH--HKKSVRALC  326 (460)
T ss_pred             EecCCcceEEEeeecccceEEEecCC--CCcceeEEeecCCCceEEecCCceEEEeeeccCceeEeeec--ccceeeEEe
Confidence            99999999999999999999999987  78999999999888899999999999999999999888876  777888999


Q ss_pred             ECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeee
Q 040370          161 FNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKE  226 (228)
Q Consensus       161 ~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~  226 (228)
                      .+|....+++++.  ..|+-|++..+..+..+ .+|...+++++...|+ ++++|+++|.+.+||-
T Consensus       327 lhP~e~~fASas~--dnik~w~~p~g~f~~nl-sgh~~iintl~~nsD~-v~~~G~dng~~~fwdw  388 (460)
T KOG0285|consen  327 LHPKENLFASASP--DNIKQWKLPEGEFLQNL-SGHNAIINTLSVNSDG-VLVSGGDNGSIMFWDW  388 (460)
T ss_pred             cCCchhhhhccCC--ccceeccCCccchhhcc-ccccceeeeeeeccCc-eEEEcCCceEEEEEec
Confidence            9998776666544  67999999999998886 8999999999998766 6889999999999995

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=3.1e-32  Score=201.46  Aligned_cols=219  Identities=18%  Similarity=0.339  Sum_probs=182.5

Q ss_pred             CCcCCccccceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeecc-c-------------------
Q 040370            1 FFDFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANV-P-------------------   60 (228)
Q Consensus         1 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~-~-------------------   60 (228)
                      +|+...........+  +...|+++.|+++|.+|++|..+|.|.|||..+.+....+.. +                   
T Consensus       201 lW~~~s~~v~~l~~~--~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~~~~lssGsr  278 (484)
T KOG0305|consen  201 LWSASSGSVTELCSF--GEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWNSSVLSSGSR  278 (484)
T ss_pred             EEecCCCceEEeEec--CCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEeccCceEEEecC
Confidence            366555554444443  278999999999999999999999999999765443222221 0                   


Q ss_pred             ------------------eeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECC-CC
Q 040370           61 ------------------EISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTK-DQ  121 (228)
Q Consensus        61 ------------------~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~-~~  121 (228)
                                        ..+|...|..++|+++++++|+|+.|+.+.|||....++...+..|  ...|.+++|+| ..
T Consensus       279 ~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H--~aAVKA~awcP~q~  356 (484)
T KOG0305|consen  279 DGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEH--TAAVKALAWCPWQS  356 (484)
T ss_pred             CCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEecc--ceeeeEeeeCCCcc
Confidence                              1234888999999999999999999999999999888888888876  88999999999 67


Q ss_pred             CEEEEee--CCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEE-eeCCCCeEEEEEcCCcceeEEeecCCCC
Q 040370          122 RFVLSCG--KDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLS-IDEPSNEIVIWDALTAEKVAKWSSNHIG  198 (228)
Q Consensus       122 ~~l~~~~--~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~d~~i~i~d~~~~~~~~~~~~~~~~  198 (228)
                      ..||+|+  .|+.|++||..+++.+....   ....++.+.|++..+.+++ -|..++.|.||+..+.+.+..+ .+|..
T Consensus       357 ~lLAsGGGs~D~~i~fwn~~~g~~i~~vd---tgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l-~gH~~  432 (484)
T KOG0305|consen  357 GLLATGGGSADRCIKFWNTNTGARIDSVD---TGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAEL-LGHTS  432 (484)
T ss_pred             CceEEcCCCcccEEEEEEcCCCcEecccc---cCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeee-cCCcc
Confidence            7888875  79999999999999888775   5678899999998865554 4556789999999998888888 79999


Q ss_pred             CcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370          199 APRWIEHSPAEAAFITCGTDRSVRFWKEI  227 (228)
Q Consensus       199 ~v~~~~~~~~~~~l~s~~~dg~i~vwd~~  227 (228)
                      .|..++++|+|..+++|+.|.++++|+++
T Consensus       433 RVl~la~SPdg~~i~t~a~DETlrfw~~f  461 (484)
T KOG0305|consen  433 RVLYLALSPDGETIVTGAADETLRFWNLF  461 (484)
T ss_pred             eeEEEEECCCCCEEEEecccCcEEecccc
Confidence            99999999999999999999999999974

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=9.2e-33  Score=207.25  Aligned_cols=211  Identities=18%  Similarity=0.306  Sum_probs=178.1

Q ss_pred             eEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeee-ccceeeeccceeeEEeCCC-CCeEEEEecCCeE
Q 040370           12 AFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSA-NVPEISVNGAINQVRYSST-GGMYVTASKDGAI   89 (228)
Q Consensus        12 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~v   89 (228)
                      +.-+.+|++.|.+++...+|.+|++|+.|.++++|.++++...... ....+| .+.|.+++++.. ..+|+++|.|+++
T Consensus       358 c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH-~~svgava~~~~~asffvsvS~D~tl  436 (775)
T KOG0319|consen  358 CQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGH-TNSVGAVAGSKLGASFFVSVSQDCTL  436 (775)
T ss_pred             eEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhccc-ccccceeeecccCccEEEEecCCceE
Confidence            3455689999999996668899999999999999999654433222 223344 899999999764 4589999999999


Q ss_pred             EEEeCCCCce---eeEE----ecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEEC
Q 040370           90 RLWDGVSANC---VRSI----VGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFN  162 (228)
Q Consensus        90 ~iwd~~~~~~---~~~~----~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~  162 (228)
                      ++|++...+.   ...+    ..+.|...|++++.+|+.++++||+.|++.++|++++.+...++.+  |...+.++.|+
T Consensus       437 K~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsG--H~RGvw~V~Fs  514 (775)
T KOG0319|consen  437 KLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSG--HTRGVWCVSFS  514 (775)
T ss_pred             EEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeC--CccceEEEEec
Confidence            9999876221   1111    2233478999999999999999999999999999999999999988  77889999999


Q ss_pred             CCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370          163 DTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEI  227 (228)
Q Consensus       163 ~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~  227 (228)
                      |..+.++++++ |.+|+||.+.+..++.++ .+|...|..+.|-.++..|++++.||.+++|++.
T Consensus       515 ~~dq~laT~Sg-D~TvKIW~is~fSClkT~-eGH~~aVlra~F~~~~~qliS~~adGliKlWnik  577 (775)
T KOG0319|consen  515 KNDQLLATCSG-DKTVKIWSISTFSCLKTF-EGHTSAVLRASFIRNGKQLISAGADGLIKLWNIK  577 (775)
T ss_pred             cccceeEeccC-CceEEEEEeccceeeeee-cCccceeEeeeeeeCCcEEEeccCCCcEEEEecc
Confidence            99998888766 899999999999999999 8999999999999999999999999999999963

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=2.3e-31  Score=215.90  Aligned_cols=214  Identities=14%  Similarity=0.303  Sum_probs=171.4

Q ss_pred             CCcCCccccceeEEEeecCcceEEEEEeC-CCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeC-CCCC
Q 040370            1 FFDFSKATAKRAFRVIQDTHNVRSVSFHP-SGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYS-STGG   78 (228)
Q Consensus         1 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~   78 (228)
                      |||+...  +....+.+|...|++++|+| ++.+|++|+.|+.|++||+.++.....+..     ...+.++.|+ +++.
T Consensus       559 lWd~~~~--~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~-----~~~v~~v~~~~~~g~  631 (793)
T PLN00181        559 VWDVARS--QLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKT-----KANICCVQFPSESGR  631 (793)
T ss_pred             EEECCCC--eEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEec-----CCCeEEEEEeCCCCC
Confidence            4777643  34455668999999999997 789999999999999999998876655432     4578999995 4789


Q ss_pred             eEEEEecCCeEEEEeCCCCc-eeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCC------eeEEEEecce
Q 040370           79 MYVTASKDGAIRLWDGVSAN-CVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSG------RLVKQYLGAT  151 (228)
Q Consensus        79 ~l~~~~~dg~v~iwd~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~------~~~~~~~~~~  151 (228)
                      +|++|+.||.|++||+++.+ ....+..|  ...|.++.|. ++.++++++.|++|++||++.+      +.+..+.+  
T Consensus       632 ~latgs~dg~I~iwD~~~~~~~~~~~~~h--~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~g--  706 (793)
T PLN00181        632 SLAFGSADHKVYYYDLRNPKLPLCTMIGH--SKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMG--  706 (793)
T ss_pred             EEEEEeCCCeEEEEECCCCCccceEecCC--CCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcC--
Confidence            99999999999999998765 34555554  6789999997 6789999999999999999743      45666665  


Q ss_pred             eeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEee------------cCCCCCcEEEEeCCCCcEEEEecCCC
Q 040370          152 HTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWS------------SNHIGAPRWIEHSPAEAAFITCGTDR  219 (228)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~------------~~~~~~v~~~~~~~~~~~l~s~~~dg  219 (228)
                      |...+..+.+++++.++++++. |+.|++|+.....+...+.            ..+...|.+++|+|++..|++|+.||
T Consensus       707 h~~~i~~v~~s~~~~~lasgs~-D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG  785 (793)
T PLN00181        707 HTNVKNFVGLSVSDGYIATGSE-TNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTG  785 (793)
T ss_pred             CCCCeeEEEEcCCCCEEEEEeC-CCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCC
Confidence            5566778889999988777655 8999999987654432221            23456799999999999999999999


Q ss_pred             CEEEeeec
Q 040370          220 SVRFWKEI  227 (228)
Q Consensus       220 ~i~vwd~~  227 (228)
                      .|+||++.
T Consensus       786 ~I~i~~~~  793 (793)
T PLN00181        786 NIKILEMV  793 (793)
T ss_pred             cEEEEecC
Confidence            99999973

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=4.6e-32  Score=178.91  Aligned_cols=203  Identities=15%  Similarity=0.197  Sum_probs=173.1

Q ss_pred             ceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeE
Q 040370           10 KRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAI   89 (228)
Q Consensus        10 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v   89 (228)
                      ++...+..+.++|.++.|+-+|+|.++++.|.+|++|+...+.+++.+..+    ...|..++.+.|...|++|+.|..+
T Consensus         8 kr~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsgh----G~EVlD~~~s~Dnskf~s~GgDk~v   83 (307)
T KOG0316|consen    8 KRLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGH----GHEVLDAALSSDNSKFASCGGDKAV   83 (307)
T ss_pred             hhceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCC----CceeeeccccccccccccCCCCceE
Confidence            344555679999999999999999999999999999999999988877643    7789999999999999999999999


Q ss_pred             EEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCC--eeEEEEecceeeeeeeEEEECCCCcE
Q 040370           90 RLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSG--RLVKQYLGATHTQLRFQAVFNDTEEF  167 (228)
Q Consensus        90 ~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (228)
                      .+||+++|+..+.+.+|  ...|+.+.|+.+...+++|+.|..+++||.++.  ++++.+..  ....+.++...  +..
T Consensus        84 ~vwDV~TGkv~Rr~rgH--~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQilde--a~D~V~Si~v~--~he  157 (307)
T KOG0316|consen   84 QVWDVNTGKVDRRFRGH--LAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDE--AKDGVSSIDVA--EHE  157 (307)
T ss_pred             EEEEcccCeeeeecccc--cceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhh--hcCceeEEEec--ccE
Confidence            99999999999999987  889999999999999999999999999999864  45555543  34445555442  344


Q ss_pred             EEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeee
Q 040370          168 VLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKE  226 (228)
Q Consensus       168 ~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~  226 (228)
                      ++ +|+.||+++.||++.|+...-.   ...+|+++.|+++++..+.++.|+++++-|-
T Consensus       158 Iv-aGS~DGtvRtydiR~G~l~sDy---~g~pit~vs~s~d~nc~La~~l~stlrLlDk  212 (307)
T KOG0316|consen  158 IV-AGSVDGTVRTYDIRKGTLSSDY---FGHPITSVSFSKDGNCSLASSLDSTLRLLDK  212 (307)
T ss_pred             EE-eeccCCcEEEEEeecceeehhh---cCCcceeEEecCCCCEEEEeeccceeeeccc
Confidence            44 4666999999999999887665   3459999999999999999999999999773

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.5e-32  Score=210.25  Aligned_cols=217  Identities=21%  Similarity=0.366  Sum_probs=181.0

Q ss_pred             CCcCCccccceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeE
Q 040370            1 FFDFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMY   80 (228)
Q Consensus         1 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l   80 (228)
                      +||+.....  .-++.+|.++|+.++|+|++.++++|++|-.|+||+.++.+++.++.   +| -..|..+.|++.-..+
T Consensus        35 lWDYRM~tl--i~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~---GH-lDYVRt~~FHheyPWI  108 (1202)
T KOG0292|consen   35 LWDYRMGTL--IDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLL---GH-LDYVRTVFFHHEYPWI  108 (1202)
T ss_pred             eehhhhhhH--HhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhc---cc-cceeEEeeccCCCceE
Confidence            477775544  33456899999999999999999999999999999999988766554   33 7889999999999999


Q ss_pred             EEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCee-----------------
Q 040370           81 VTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRL-----------------  143 (228)
Q Consensus        81 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~-----------------  143 (228)
                      +++|.|.+|+||+.++++++..+.+|  .-.|+|..|+|....++++|-|.+||+||+...+.                 
T Consensus       109 lSASDDQTIrIWNwqsr~~iavltGH--nHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~  186 (1202)
T KOG0292|consen  109 LSASDDQTIRIWNWQSRKCIAVLTGH--NHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQG  186 (1202)
T ss_pred             EEccCCCeEEEEeccCCceEEEEecC--ceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhcccc
Confidence            99999999999999999999999998  55899999999999999999999999999853111                 


Q ss_pred             ----------EEEEecceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCccee--EEeecCCCCCcEEEEeCCCCcE
Q 040370          144 ----------VKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKV--AKWSSNHIGAPRWIEHSPAEAA  211 (228)
Q Consensus       144 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~  211 (228)
                                +.++....|...+.-++|+|.-+.++++ ++|+.|++|.+...+.-  -+. .+|.+.|.++-|+|...+
T Consensus       187 ~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG-~DDRqVKlWrmnetKaWEvDtc-rgH~nnVssvlfhp~q~l  264 (1202)
T KOG0292|consen  187 NSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSG-ADDRQVKLWRMNETKAWEVDTC-RGHYNNVSSVLFHPHQDL  264 (1202)
T ss_pred             chhhcCCcCeeeeeeecccccccceEEecCCcceEEec-CCcceeeEEEeccccceeehhh-hcccCCcceEEecCccce
Confidence                      1111112256667788999988888775 45899999998765542  223 699999999999999999


Q ss_pred             EEEecCCCCEEEeeec
Q 040370          212 FITCGTDRSVRFWKEI  227 (228)
Q Consensus       212 l~s~~~dg~i~vwd~~  227 (228)
                      +++.|+|++|+|||+.
T Consensus       265 IlSnsEDksirVwDm~  280 (1202)
T KOG0292|consen  265 ILSNSEDKSIRVWDMT  280 (1202)
T ss_pred             eEecCCCccEEEEecc
Confidence            9999999999999974

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=100.00  E-value=7.4e-33  Score=189.54  Aligned_cols=215  Identities=16%  Similarity=0.288  Sum_probs=176.9

Q ss_pred             eeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccce------------EE---eeeccceeeeccceeeEEeCC
Q 040370           11 RAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQ------------CY---LSANVPEISVNGAINQVRYSS   75 (228)
Q Consensus        11 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~------------~~---~~~~~~~~~~~~~i~~~~~~~   75 (228)
                      +...+..|..++++.+|+|||.++|+|+.|-.|+|.|++..-            ..   ..++... .|...|+++.|+|
T Consensus       104 Et~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlY-DH~devn~l~FHP  182 (430)
T KOG0640|consen  104 ETKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLY-DHVDEVNDLDFHP  182 (430)
T ss_pred             ceEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehh-hccCcccceeecc
Confidence            344566899999999999999999999999999999987311            00   0111111 2378999999999


Q ss_pred             CCCeEEEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEE-ecceeee
Q 040370           76 TGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQY-LGATHTQ  154 (228)
Q Consensus        76 ~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~-~~~~~~~  154 (228)
                      ....|++|+.|++|+++|.......+-++......+|.++.|+|.|.+|+.|..-.++++||+.+-++...- ...+|..
T Consensus       183 re~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~  262 (430)
T KOG0640|consen  183 RETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTG  262 (430)
T ss_pred             hhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCccccccc
Confidence            999999999999999999986554444433333678999999999999999999999999999987764433 3445788


Q ss_pred             eeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCC-CcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370          155 LRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIG-APRWIEHSPAEAAFITCGTDRSVRFWKEI  227 (228)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~s~~~dg~i~vwd~~  227 (228)
                      .+.++.+++.++..++ ++.||.|++||--+++++.++...|.+ .|.+..|..++++++++|.|..+++|.+.
T Consensus       263 ai~~V~Ys~t~~lYvT-aSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~  335 (430)
T KOG0640|consen  263 AITQVRYSSTGSLYVT-ASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEIS  335 (430)
T ss_pred             ceeEEEecCCccEEEE-eccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeec
Confidence            9999999999987776 555899999999999999998777865 68999999999999999999999999874

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=100.00  E-value=1.6e-32  Score=195.46  Aligned_cols=213  Identities=18%  Similarity=0.329  Sum_probs=171.7

Q ss_pred             ceeEEEeecCcceEEEEEeC-CCCEEEEecCCCeEEEEEcccceE----EeeeccceeeeccceeeEEeCC-CCCeEEEE
Q 040370           10 KRAFRVIQDTHNVRSVSFHP-SGDFLLAGTDHPIAHLYDVNTFQC----YLSANVPEISVNGAINQVRYSS-TGGMYVTA   83 (228)
Q Consensus        10 ~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~vw~~~~~~~----~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~   83 (228)
                      .+.+++.+|..+-.+++|++ ..-.|++|+.|+.|++||+.....    +.......+| ...|..++|++ +...|+++
T Consensus       168 ~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h-~~~VeDV~~h~~h~~lF~sv  246 (422)
T KOG0264|consen  168 RPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGH-EDVVEDVAWHPLHEDLFGSV  246 (422)
T ss_pred             CCceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecC-Ccceehhhccccchhhheee
Confidence            44568889999889999999 456889999999999999986543    2222233344 88999999999 56689999


Q ss_pred             ecCCeEEEEeCCC--CceeeEEecccccceeEEEEECC-CCCEEEEeeCCCeEEEEEccCCe-eEEEEecceeeeeeeEE
Q 040370           84 SKDGAIRLWDGVS--ANCVRSIVGAHGTAEATSANFTK-DQRFVLSCGKDSTVKLWEVSSGR-LVKQYLGATHTQLRFQA  159 (228)
Q Consensus        84 ~~dg~v~iwd~~~--~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~-~~~~~~~~~~~~~~~~~  159 (228)
                      +.|+.+.|||+++  .+.......|  ..++.|++|+| ++..||+|+.|++|++||+|+.+ ++..+.+  |...+..+
T Consensus       247 ~dd~~L~iwD~R~~~~~~~~~~~ah--~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~--H~dev~~V  322 (422)
T KOG0264|consen  247 GDDGKLMIWDTRSNTSKPSHSVKAH--SAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEG--HEDEVFQV  322 (422)
T ss_pred             cCCCeEEEEEcCCCCCCCccccccc--CCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccC--CCcceEEE
Confidence            9999999999995  4444444444  88999999999 67789999999999999999864 4566665  88899999


Q ss_pred             EECCCCcEEEEeeCCCCeEEEEEcCCccee-------------EEeecCCCCCcEEEEeCCCCc-EEEEecCCCCEEEee
Q 040370          160 VFNDTEEFVLSIDEPSNEIVIWDALTAEKV-------------AKWSSNHIGAPRWIEHSPAEA-AFITCGTDRSVRFWK  225 (228)
Q Consensus       160 ~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~-------------~~~~~~~~~~v~~~~~~~~~~-~l~s~~~dg~i~vwd  225 (228)
                      .|+|....++++++.|+.+.+||+..-...             .-...+|...|..+.|+|+.. .+++.++|+.+.||+
T Consensus       323 ~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~  402 (422)
T KOG0264|consen  323 EWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQ  402 (422)
T ss_pred             EeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEee
Confidence            999999999888888999999998642211             122368999999999999665 677889999999998


Q ss_pred             ec
Q 040370          226 EI  227 (228)
Q Consensus       226 ~~  227 (228)
                      ..
T Consensus       403 ~s  404 (422)
T KOG0264|consen  403 MA  404 (422)
T ss_pred             cc
Confidence            63

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=100.00  E-value=7e-32  Score=188.66  Aligned_cols=217  Identities=17%  Similarity=0.287  Sum_probs=175.0

Q ss_pred             CCcCCccccceeEEEeecCcceEEEEEeCCC---CEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCC
Q 040370            1 FFDFSKATAKRAFRVIQDTHNVRSVSFHPSG---DFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTG   77 (228)
Q Consensus         1 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~   77 (228)
                      |||..   .+....+.+|.++|.+++|....   ..|++++.|.++++|..+.++...........|...|.++...++|
T Consensus       129 iWd~~---Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sg  205 (423)
T KOG0313|consen  129 IWDLK---GKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSG  205 (423)
T ss_pred             EEecC---CceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCC
Confidence            35554   66778888999999999886533   3599999999999999998875544333222449999999999999


Q ss_pred             CeEEEEecCCeEEEEeCCC-------------------------CceeeEEecccccceeEEEEECCCCCEEEEeeCCCe
Q 040370           78 GMYVTASKDGAIRLWDGVS-------------------------ANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDST  132 (228)
Q Consensus        78 ~~l~~~~~dg~v~iwd~~~-------------------------~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~  132 (228)
                      ..+++|+.|..+.+|+..+                         +.++..+.+|  ..+|.++.|++ ...+++++.|.+
T Consensus       206 tr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GH--t~~Vs~V~w~d-~~v~yS~SwDHT  282 (423)
T KOG0313|consen  206 TRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGH--TEPVSSVVWSD-ATVIYSVSWDHT  282 (423)
T ss_pred             CeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEeccc--ccceeeEEEcC-CCceEeecccce
Confidence            9999999999999999321                         1233344444  78999999998 678999999999


Q ss_pred             EEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcc--eeEEeecCCCCCcEEEEeCC-CC
Q 040370          133 VKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAE--KVAKWSSNHIGAPRWIEHSP-AE  209 (228)
Q Consensus       133 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~--~~~~~~~~~~~~v~~~~~~~-~~  209 (228)
                      |+.||+.++.....+..   +....++...|....++++++ |..+++||.|++.  .+.....+|.+.|.++.|+| +.
T Consensus       283 Ik~WDletg~~~~~~~~---~ksl~~i~~~~~~~Ll~~gss-dr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~  358 (423)
T KOG0313|consen  283 IKVWDLETGGLKSTLTT---NKSLNCISYSPLSKLLASGSS-DRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNE  358 (423)
T ss_pred             EEEEEeecccceeeeec---CcceeEeecccccceeeecCC-CCceeecCCCCCCCceeEEeeecchhhhhheecCCCCc
Confidence            99999999998888764   556788889997777777655 8999999998764  34444479999999999999 56


Q ss_pred             cEEEEecCCCCEEEeeec
Q 040370          210 AAFITCGTDRSVRFWKEI  227 (228)
Q Consensus       210 ~~l~s~~~dg~i~vwd~~  227 (228)
                      .+|++++.|+++++||++
T Consensus       359 ~~~~S~S~D~t~klWDvR  376 (423)
T KOG0313|consen  359 FQLVSGSYDNTVKLWDVR  376 (423)
T ss_pred             eEEEEEecCCeEEEEEec
Confidence            689999999999999986

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=100.00  E-value=2.3e-32  Score=191.03  Aligned_cols=203  Identities=17%  Similarity=0.312  Sum_probs=172.8

Q ss_pred             EeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccce-----EE-----------------eeeccceeeeccceeeEE
Q 040370           15 VIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQ-----CY-----------------LSANVPEISVNGAINQVR   72 (228)
Q Consensus        15 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~-----~~-----------------~~~~~~~~~~~~~i~~~~   72 (228)
                      ..+|...|-+++..+++..+++|+.|.+|.+|+.+...     ..                 ...... ..|..+|.++.
T Consensus       189 ~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl-~GHt~~Vs~V~  267 (423)
T KOG0313|consen  189 CRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTL-EGHTEPVSSVV  267 (423)
T ss_pred             hcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEe-cccccceeeEE
Confidence            34999999999999999999999999999999932210     00                 011112 23489999999


Q ss_pred             eCCCCCeEEEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCe---eEEEEec
Q 040370           73 YSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGR---LVKQYLG  149 (228)
Q Consensus        73 ~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~---~~~~~~~  149 (228)
                      |++ ...+++++.|.+|+.||+.++.....+..   ...++++..+|..++|++|+.|..+++||.+++.   ..+++.+
T Consensus       268 w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~---~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~g  343 (423)
T KOG0313|consen  268 WSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTT---NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIG  343 (423)
T ss_pred             EcC-CCceEeecccceEEEEEeecccceeeeec---CcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeec
Confidence            997 66899999999999999999999988887   6689999999999999999999999999999763   2345555


Q ss_pred             ceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcc-eeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeee
Q 040370          150 ATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAE-KVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKE  226 (228)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~  226 (228)
                        |...+..+.|+|...+++++++.|+++++||+|+.+ ++..+ .+|...|.++.|. ++.++++||.|..|+++.-
T Consensus       344 --H~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI-~~h~DKvl~vdW~-~~~~IvSGGaD~~l~i~~~  417 (423)
T KOG0313|consen  344 --HKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDI-AGHNDKVLSVDWN-EGGLIVSGGADNKLRIFKG  417 (423)
T ss_pred             --chhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceee-ccCCceEEEEecc-CCceEEeccCcceEEEecc
Confidence              777999999999999999999999999999999988 66666 7999999999997 5668999999999999863

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=100.00  E-value=4.6e-31  Score=177.01  Aligned_cols=206  Identities=14%  Similarity=0.189  Sum_probs=181.4

Q ss_pred             eEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEE
Q 040370           12 AFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRL   91 (228)
Q Consensus        12 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i   91 (228)
                      ++.+.+|..+++.+.|+.+|++|.+++.|....||-..+|+.+-.+..   | .+.|.|++.+-+.+.+++|+.|.++++
T Consensus         3 pi~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~G---H-tGavW~~Did~~s~~liTGSAD~t~kL   78 (327)
T KOG0643|consen    3 PILLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDG---H-TGAVWCCDIDWDSKHLITGSADQTAKL   78 (327)
T ss_pred             ccccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecC---C-CceEEEEEecCCcceeeeccccceeEE
Confidence            355678999999999999999999999999999999989998777664   3 899999999999999999999999999


Q ss_pred             EeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeC-----CCeEEEEEccC-------CeeEEEEecceeeeeeeEE
Q 040370           92 WDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGK-----DSTVKLWEVSS-------GRLVKQYLGATHTQLRFQA  159 (228)
Q Consensus        92 wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-----d~~i~~wd~~~-------~~~~~~~~~~~~~~~~~~~  159 (228)
                      ||+++|+.+..++.   ..+|..+.|++++++++....     .+.|.++|++.       .++...+..  +...+..+
T Consensus        79 WDv~tGk~la~~k~---~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t--~~skit~a  153 (327)
T KOG0643|consen   79 WDVETGKQLATWKT---NSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPT--PDSKITSA  153 (327)
T ss_pred             EEcCCCcEEEEeec---CCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecC--Cccceeee
Confidence            99999999999987   779999999999998877654     35799999983       334555544  56788899


Q ss_pred             EECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370          160 VFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEI  227 (228)
Q Consensus       160 ~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~  227 (228)
                      .|.|-+++++++.. ||.|.+||.++++........|...|+.++++|+..+++|++.|.+-++||..
T Consensus       154 ~Wg~l~~~ii~Ghe-~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~  220 (327)
T KOG0643|consen  154 LWGPLGETIIAGHE-DGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVR  220 (327)
T ss_pred             eecccCCEEEEecC-CCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeecc
Confidence            99999999999666 89999999999988777667899999999999999999999999999999964

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=3e-31  Score=181.54  Aligned_cols=209  Identities=17%  Similarity=0.287  Sum_probs=166.3

Q ss_pred             cccceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCC--eEEEEe
Q 040370            7 ATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGG--MYVTAS   84 (228)
Q Consensus         7 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~l~~~~   84 (228)
                      +...+.+.+..|.++|++++.  ++.++|+|+.|-+|+|||+.+......+.    +|.+.|+++.|.+.-.  .|++|+
T Consensus        31 ~~l~~lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~qlg~ll----~HagsitaL~F~~~~S~shLlS~s  104 (362)
T KOG0294|consen   31 PTLKPLFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQLGILL----SHAGSITALKFYPPLSKSHLLSGS  104 (362)
T ss_pred             eeeeccccccccccceeEEEe--cceeEeccCCCCcEEEEeccchhhhccee----ccccceEEEEecCCcchhheeeec
Confidence            334556777789999999999  69999999999999999999876554443    3388999999998654  899999


Q ss_pred             cCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECC-
Q 040370           85 KDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFND-  163 (228)
Q Consensus        85 ~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~-  163 (228)
                      .||.|.+|+......+..++.|  ...|+.++.+|.+++.++.+.|+.++.||+-.|+.-.......   ....+.|+| 
T Consensus       105 dDG~i~iw~~~~W~~~~slK~H--~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~---~at~v~w~~~  179 (362)
T KOG0294|consen  105 DDGHIIIWRVGSWELLKSLKAH--KGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKN---KATLVSWSPQ  179 (362)
T ss_pred             CCCcEEEEEcCCeEEeeeeccc--ccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCC---cceeeEEcCC
Confidence            9999999999999999999987  5569999999999999999999999999998776433322110   001122222 


Q ss_pred             --------------------------------------CCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEe
Q 040370          164 --------------------------------------TEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEH  205 (228)
Q Consensus       164 --------------------------------------~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~  205 (228)
                                                            ++.++++++. |+.|.+||.....+...+ .+|...|-++.+
T Consensus       180 Gd~F~v~~~~~i~i~q~d~A~v~~~i~~~~r~l~~~~l~~~~L~vG~d-~~~i~~~D~ds~~~~~~~-~AH~~RVK~i~~  257 (362)
T KOG0294|consen  180 GDHFVVSGRNKIDIYQLDNASVFREIENPKRILCATFLDGSELLVGGD-NEWISLKDTDSDTPLTEF-LAHENRVKDIAS  257 (362)
T ss_pred             CCEEEEEeccEEEEEecccHhHhhhhhccccceeeeecCCceEEEecC-CceEEEeccCCCccceee-ecchhheeeeEE
Confidence                                                  3444555444 799999998887777777 799999999984


Q ss_pred             --CCCCcEEEEecCCCCEEEeeecC
Q 040370          206 --SPAEAAFITCGTDRSVRFWKEIL  228 (228)
Q Consensus       206 --~~~~~~l~s~~~dg~i~vwd~~l  228 (228)
                        .|++.+|+|+|.||.|++||+.|
T Consensus       258 ~~~~~~~~lvTaSSDG~I~vWd~~~  282 (362)
T KOG0294|consen  258 YTNPEHEYLVTASSDGFIKVWDIDM  282 (362)
T ss_pred             EecCCceEEEEeccCceEEEEEccc
Confidence              46788999999999999999865

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.5e-31  Score=197.87  Aligned_cols=204  Identities=18%  Similarity=0.303  Sum_probs=186.6

Q ss_pred             EeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeC
Q 040370           15 VIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDG   94 (228)
Q Consensus        15 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~   94 (228)
                      +..++..|.++.++|....++++-.+|.|.|||.++...+..+...    .-+|++..|-+..+.+++|+.|..|++|+.
T Consensus         9 ~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~----~~PvRa~kfiaRknWiv~GsDD~~IrVfny   84 (794)
T KOG0276|consen    9 FQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVS----EVPVRAAKFIARKNWIVTGSDDMQIRVFNY   84 (794)
T ss_pred             hhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeec----ccchhhheeeeccceEEEecCCceEEEEec
Confidence            3458999999999999999999999999999999999888877765    678999999999999999999999999999


Q ss_pred             CCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCC-eeEEEEecceeeeeeeEEEECCCCcEEEEeeC
Q 040370           95 VSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSG-RLVKQYLGATHTQLRFQAVFNDTEEFVLSIDE  173 (228)
Q Consensus        95 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (228)
                      ++++.+..+..|  ...|.+++.+|...++++++.|-+|++||.+.. .+.+++++  |...+.+++|+|.....+++++
T Consensus        85 nt~ekV~~FeAH--~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeG--H~HyVMqv~fnPkD~ntFaS~s  160 (794)
T KOG0276|consen   85 NTGEKVKTFEAH--SDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEG--HEHYVMQVAFNPKDPNTFASAS  160 (794)
T ss_pred             ccceeeEEeecc--ccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcC--cceEEEEEEecCCCccceeeee
Confidence            999999999987  889999999999999999999999999999864 45677777  7778999999999999999999


Q ss_pred             CCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCC--CCcEEEEecCCCCEEEeeec
Q 040370          174 PSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSP--AEAAFITCGTDRSVRFWKEI  227 (228)
Q Consensus       174 ~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~s~~~dg~i~vwd~~  227 (228)
                      -|++|++|.+.+..+..++ .+|...|+++.+-+  |..+|+||+.|.+|+|||..
T Consensus       161 LDrTVKVWslgs~~~nfTl-~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQ  215 (794)
T KOG0276|consen  161 LDRTVKVWSLGSPHPNFTL-EGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQ  215 (794)
T ss_pred             ccccEEEEEcCCCCCceee-eccccCcceEEeccCCCcceEEecCCCceEEEeecc
Confidence            9999999999999999998 69999999999987  45799999999999999953

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=7.7e-32  Score=193.70  Aligned_cols=199  Identities=19%  Similarity=0.295  Sum_probs=168.5

Q ss_pred             ecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCC-CCeEEEEecCCeEEEEeCC
Q 040370           17 QDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSST-GGMYVTASKDGAIRLWDGV   95 (228)
Q Consensus        17 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~v~iwd~~   95 (228)
                      .....|.+++|..||++||+|...|.|+|+|+++...+.   ....| ..++..+.|+|+ +..+++|+.|+.+++||+.
T Consensus        66 rFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR---~~~ah-~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s  141 (487)
T KOG0310|consen   66 RFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILR---QLYAH-QAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLS  141 (487)
T ss_pred             hhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHH---HHhhc-cCceeEEEecccCCeEEEecCCCceEEEEEcC
Confidence            356789999999999999999999999999966532222   22333 889999999995 5578889999999999999


Q ss_pred             CCceeeEEecccccceeEEEEECC-CCCEEEEeeCCCeEEEEEccCC-eeEEEEecceeeeeeeEEEECCCCcEEEEeeC
Q 040370           96 SANCVRSIVGAHGTAEATSANFTK-DQRFVLSCGKDSTVKLWEVSSG-RLVKQYLGATHTQLRFQAVFNDTEEFVLSIDE  173 (228)
Q Consensus        96 ~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~~wd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (228)
                      +......+.+|  ...|.+.+|+| ++..++||+.||.|++||++.. ..+..+.   |..++..+.+-|.|..++++|+
T Consensus       142 ~a~v~~~l~~h--tDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln---hg~pVe~vl~lpsgs~iasAgG  216 (487)
T KOG0310|consen  142 TAYVQAELSGH--TDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELN---HGCPVESVLALPSGSLIASAGG  216 (487)
T ss_pred             CcEEEEEecCC--cceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEec---CCCceeeEEEcCCCCEEEEcCC
Confidence            88875566665  88999999999 5568999999999999999987 5555554   7888999999999999999887


Q ss_pred             CCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeee
Q 040370          174 PSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKE  226 (228)
Q Consensus       174 ~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~  226 (228)
                        +.+++||+-+|.........|...|+|+.+..++..|+++|-|+.|++||+
T Consensus       217 --n~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~  267 (487)
T KOG0310|consen  217 --NSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDT  267 (487)
T ss_pred             --CeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEc
Confidence              899999999777666654569999999999999999999999999999994

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=3.1e-31  Score=180.32  Aligned_cols=204  Identities=16%  Similarity=0.299  Sum_probs=163.1

Q ss_pred             ceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCC-CeEEEEecCCe
Q 040370           10 KRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTG-GMYVTASKDGA   88 (228)
Q Consensus        10 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~   88 (228)
                      +....+.+|.+.|..+.|.+|++.+++++.|.+++.||.++|+.....+..    ..-|+++.-+.-| .++.+++.||+
T Consensus        81 eN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h----~~~vNs~~p~rrg~~lv~SgsdD~t  156 (338)
T KOG0265|consen   81 ENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGH----TSFVNSLDPSRRGPQLVCSGSDDGT  156 (338)
T ss_pred             cceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecccceeeehhccc----cceeeecCccccCCeEEEecCCCce
Confidence            344455699999999999999999999999999999999999987766643    7778888754434 46778999999


Q ss_pred             EEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEE-------
Q 040370           89 IRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVF-------  161 (228)
Q Consensus        89 v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~-------  161 (228)
                      +++||+++...++.+..   +.+++++.|..++..+.+|+-|+.|++||++.+.....+.+  |...++.+..       
T Consensus       157 ~kl~D~R~k~~~~t~~~---kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsG--h~DtIt~lsls~~gs~l  231 (338)
T KOG0265|consen  157 LKLWDIRKKEAIKTFEN---KYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSG--HADTITGLSLSRYGSFL  231 (338)
T ss_pred             EEEEeecccchhhcccc---ceeEEEEEecccccceeeccccCceeeeccccCcceEEeec--ccCceeeEEeccCCCcc
Confidence            99999999998888866   66899999999999999999999999999998887777766  4444444444       


Q ss_pred             -------------------------------------------CCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCC
Q 040370          162 -------------------------------------------NDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIG  198 (228)
Q Consensus       162 -------------------------------------------~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~  198 (228)
                                                                 +|++..+-++.. |..+++||......+..+ .+|.+
T Consensus       232 lsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~-dr~vyvwd~~~r~~lykl-pGh~g  309 (338)
T KOG0265|consen  232 LSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSA-DRFVYVWDTTSRRILYKL-PGHYG  309 (338)
T ss_pred             ccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccc-cceEEEeecccccEEEEc-CCcce
Confidence                                                       444444444322 556666665554555555 79999


Q ss_pred             CcEEEEeCCCCcEEEEecCCCCEEEe
Q 040370          199 APRWIEHSPAEAAFITCGTDRSVRFW  224 (228)
Q Consensus       199 ~v~~~~~~~~~~~l~s~~~dg~i~vw  224 (228)
                      .|++++|+|....|.+++.|.+|.+=
T Consensus       310 svn~~~Fhp~e~iils~~sdk~i~lg  335 (338)
T KOG0265|consen  310 SVNEVDFHPTEPIILSCSSDKTIYLG  335 (338)
T ss_pred             eEEEeeecCCCcEEEEeccCceeEee
Confidence            99999999999999999999998763

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=100.00  E-value=1.1e-30  Score=175.23  Aligned_cols=207  Identities=16%  Similarity=0.234  Sum_probs=174.9

Q ss_pred             cceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEec---
Q 040370            9 AKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASK---   85 (228)
Q Consensus         9 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---   85 (228)
                      ..++-+..+|++.|.|++.+-+.+++++|+.|.++++||+++|+.+.....     ..+|..+.|+++|++++.+..   
T Consensus        42 GerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~-----~~~Vk~~~F~~~gn~~l~~tD~~m  116 (327)
T KOG0643|consen   42 GERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKT-----NSPVKRVDFSFGGNLILASTDKQM  116 (327)
T ss_pred             CceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeec-----CCeeEEEeeccCCcEEEEEehhhc
Confidence            455666779999999999999999999999999999999999998887765     678999999999998877754   


Q ss_pred             --CCeEEEEeCC-------CCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeee
Q 040370           86 --DGAIRLWDGV-------SANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLR  156 (228)
Q Consensus        86 --dg~v~iwd~~-------~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~  156 (228)
                        .+.|.++|++       +.++...+..+  ...++.+-|.|-+++|++|..||.|..||+++++....-. ..|...+
T Consensus       117 g~~~~v~~fdi~~~~~~~~s~ep~~kI~t~--~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~-~~h~~~I  193 (327)
T KOG0643|consen  117 GYTCFVSVFDIRDDSSDIDSEEPYLKIPTP--DSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSD-EEHSSKI  193 (327)
T ss_pred             CcceEEEEEEccCChhhhcccCceEEecCC--ccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeech-hhhcccc
Confidence              4789999998       34556677665  6789999999999999999999999999999986544332 2266789


Q ss_pred             eEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEe--------------------------------------------
Q 040370          157 FQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKW--------------------------------------------  192 (228)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~--------------------------------------------  192 (228)
                      ..+.++++..++++++. |.+-++||+++.+.+.++                                            
T Consensus       194 nd~q~s~d~T~FiT~s~-Dttakl~D~~tl~v~Kty~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFy  272 (327)
T KOG0643|consen  194 NDLQFSRDRTYFITGSK-DTTAKLVDVRTLEVLKTYTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFY  272 (327)
T ss_pred             ccccccCCcceEEeccc-CccceeeeccceeeEEEeeecccccceecccccceEEecCCceeeeeeeecccccchhhhHH
Confidence            99999999999988555 899999998776544333                                            


Q ss_pred             ----------ecCCCCCcEEEEeCCCCcEEEEecCCCCEEEe
Q 040370          193 ----------SSNHIGAPRWIEHSPAEAAFITCGTDRSVRFW  224 (228)
Q Consensus       193 ----------~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vw  224 (228)
                                ..+|-++|++++|+|+|+..++|++||.|++.
T Consensus       273 h~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h  314 (327)
T KOG0643|consen  273 HLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLH  314 (327)
T ss_pred             HHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEE
Confidence                      24799999999999999999999999999985

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1.8e-31  Score=201.00  Aligned_cols=205  Identities=16%  Similarity=0.327  Sum_probs=180.0

Q ss_pred             eecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceE--------EeeeccceeeeccceeeEEeCCCCCeEEEEecCC
Q 040370           16 IQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQC--------YLSANVPEISVNGAINQVRYSSTGGMYVTASKDG   87 (228)
Q Consensus        16 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~--------~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg   87 (228)
                      ..|.+.|.+++.+||+..+++|+.|.+|++||..-...        +.............|.|+.+|||+++|+.+--|.
T Consensus       451 ~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdn  530 (888)
T KOG0306|consen  451 RAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDN  530 (888)
T ss_pred             hccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccC
Confidence            37999999999999999999999999999999753221        1111111122367899999999999999999999


Q ss_pred             eEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcE
Q 040370           88 AIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEF  167 (228)
Q Consensus        88 ~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (228)
                      +|+||-+.+.+....+.+|  .-||.|+..+||++.++||+.|++|++|-+.-|.+-..+..  |...+.++.|-|...+
T Consensus       531 TVkVyflDtlKFflsLYGH--kLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fA--HdDSvm~V~F~P~~~~  606 (888)
T KOG0306|consen  531 TVKVYFLDTLKFFLSLYGH--KLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFA--HDDSVMSVQFLPKTHL  606 (888)
T ss_pred             eEEEEEecceeeeeeeccc--ccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhc--ccCceeEEEEccccee
Confidence            9999999999988888887  88999999999999999999999999999999999888876  7788999999997777


Q ss_pred             EEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeee
Q 040370          168 VLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKE  226 (228)
Q Consensus       168 ~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~  226 (228)
                      ++++|. |+.|+-||-...+.+..+ .+|...|++++.+|+|.+++++|.|.+|++|..
T Consensus       607 FFt~gK-D~kvKqWDg~kFe~iq~L-~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~  663 (888)
T KOG0306|consen  607 FFTCGK-DGKVKQWDGEKFEEIQKL-DGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWER  663 (888)
T ss_pred             EEEecC-cceEEeechhhhhhheee-ccchheeeeeEEcCCCCeEEeccCCceeEeeec
Confidence            777555 899999999999999988 799999999999999999999999999999974

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=1.5e-30  Score=186.66  Aligned_cols=214  Identities=21%  Similarity=0.337  Sum_probs=185.9

Q ss_pred             CCcCCccccceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeE
Q 040370            1 FFDFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMY   80 (228)
Q Consensus         1 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l   80 (228)
                      |||..+++.++.+.+  |..+-..+.|- +...|++++.|+.|+|+.+....++.++..    |.++|.++.|+|.+.+|
T Consensus       302 lwd~~~g~~~q~f~~--~s~~~lDVdW~-~~~~F~ts~td~~i~V~kv~~~~P~~t~~G----H~g~V~alk~n~tg~LL  374 (524)
T KOG0273|consen  302 LWDAHTGTVKQQFEF--HSAPALDVDWQ-SNDEFATSSTDGCIHVCKVGEDRPVKTFIG----HHGEVNALKWNPTGSLL  374 (524)
T ss_pred             EEeccCceEEEeeee--ccCCccceEEe-cCceEeecCCCceEEEEEecCCCcceeeec----ccCceEEEEECCCCceE
Confidence            577776666666555  77777788886 556789999999999999988777766653    38999999999999999


Q ss_pred             EEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCC---------CEEEEeeCCCeEEEEEccCCeeEEEEecce
Q 040370           81 VTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQ---------RFVLSCGKDSTVKLWEVSSGRLVKQYLGAT  151 (228)
Q Consensus        81 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~---------~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~  151 (228)
                      ++++.|++++||+.........+..|  ...|..+.|+|.+         ..+++++.|++|++||+..+.++..+..  
T Consensus       375 aS~SdD~TlkiWs~~~~~~~~~l~~H--skei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~k--  450 (524)
T KOG0273|consen  375 ASCSDDGTLKIWSMGQSNSVHDLQAH--SKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMK--  450 (524)
T ss_pred             EEecCCCeeEeeecCCCcchhhhhhh--ccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeecc--
Confidence            99999999999999888888888776  7789999999865         3699999999999999999999999876  


Q ss_pred             eeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeeecC
Q 040370          152 HTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEIL  228 (228)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~l  228 (228)
                      |..++++++|+|+++|++++.. ||.|.+|+.++++.....  ...+.|..++|+.+|.+|..+-.|+.+++-|+++
T Consensus       451 H~~pVysvafS~~g~ylAsGs~-dg~V~iws~~~~~l~~s~--~~~~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr~  524 (524)
T KOG0273|consen  451 HQEPVYSVAFSPNGRYLASGSL-DGCVHIWSTKTGKLVKSY--QGTGGIFELCWNAAGDKLGACASDGSVCVLDLRK  524 (524)
T ss_pred             CCCceEEEEecCCCcEEEecCC-CCeeEeccccchheeEee--cCCCeEEEEEEcCCCCEEEEEecCCCceEEEecC
Confidence            7889999999999999998555 899999999999999887  4566799999999999999999999999999874

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=3.9e-30  Score=186.85  Aligned_cols=207  Identities=20%  Similarity=0.363  Sum_probs=172.7

Q ss_pred             eEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecC----C
Q 040370           12 AFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKD----G   87 (228)
Q Consensus        12 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d----g   87 (228)
                      .....+|..+++-..|+|.|.++|+|...|.|+|||....+.+......  ...++|..++|+++++.+++.++.    |
T Consensus        52 ~~iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~--v~aG~I~Di~Wd~ds~RI~avGEGrerfg  129 (603)
T KOG0318|consen   52 VDIYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQ--VLAGPIKDISWDFDSKRIAAVGEGRERFG  129 (603)
T ss_pred             eeeeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeee--ecccccccceeCCCCcEEEEEecCcccee
Confidence            4445579999999999999999999999999999998775543332222  127899999999999998887653    3


Q ss_pred             eEEEEeCCCCceeeEEecccccceeEEEEECCCCC-EEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCc
Q 040370           88 AIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQR-FVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEE  166 (228)
Q Consensus        88 ~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (228)
                      .+.+||  +|...-.+.+|  ...|+++.|-|... ++++|++|+.|.+|+-.--+...++..  |...+.++.|+|+|.
T Consensus       130 ~~F~~D--SG~SvGei~Gh--Sr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~--HskFV~~VRysPDG~  203 (603)
T KOG0318|consen  130 HVFLWD--SGNSVGEITGH--SRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFRE--HSKFVNCVRYSPDGS  203 (603)
T ss_pred             EEEEec--CCCccceeecc--ceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccc--cccceeeEEECCCCC
Confidence            456665  67888888887  78999999999655 699999999999998544444444433  778999999999999


Q ss_pred             EEEEeeCCCCeEEEEEcCCcceeEEee--cCCCCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370          167 FVLSIDEPSNEIVIWDALTAEKVAKWS--SNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEI  227 (228)
Q Consensus       167 ~~~~~~~~d~~i~i~d~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~  227 (228)
                      .++++++ ||.+.+||-++++.+..+.  .+|.+.|.+++|+||+..++|++.|.+++|||+.
T Consensus       204 ~Fat~gs-Dgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs  265 (603)
T KOG0318|consen  204 RFATAGS-DGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVS  265 (603)
T ss_pred             eEEEecC-CccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEee
Confidence            9999888 8999999999999999883  3899999999999999999999999999999974

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=1.1e-32  Score=190.11  Aligned_cols=206  Identities=22%  Similarity=0.415  Sum_probs=179.4

Q ss_pred             ecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccc----eeeeccceeeEEeCCCCCeEEEEecCCeEEEE
Q 040370           17 QDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVP----EISVNGAINQVRYSSTGGMYVTASKDGAIRLW   92 (228)
Q Consensus        17 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~----~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw   92 (228)
                      +..+.+-|..|+|||++|++|+.||.|.+||..+|+..+.++..    ..-+..+|.|+.|+.|...+++|+.||.|++|
T Consensus       211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvW  290 (508)
T KOG0275|consen  211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVW  290 (508)
T ss_pred             ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEE
Confidence            45677899999999999999999999999999998865443321    12237899999999999999999999999999


Q ss_pred             eCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEee
Q 040370           93 DGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSID  172 (228)
Q Consensus        93 d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (228)
                      .+++|.+++.+...| ...|+++.|+.|+..+++++.|.++++--+++|+.+..+.+  |...+..+.|.++|.++++++
T Consensus       291 ri~tG~ClRrFdrAH-tkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrG--HsSyvn~a~ft~dG~~iisaS  367 (508)
T KOG0275|consen  291 RIETGQCLRRFDRAH-TKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRG--HSSYVNEATFTDDGHHIISAS  367 (508)
T ss_pred             EEecchHHHHhhhhh-ccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcC--ccccccceEEcCCCCeEEEec
Confidence            999999999998665 77899999999999999999999999999999999999998  788999999999999999977


Q ss_pred             CCCCeEEEEEcCCcceeEEeec-CCCCCcEEEEeCC-CCcEEEEecCCCCEEEeee
Q 040370          173 EPSNEIVIWDALTAEKVAKWSS-NHIGAPRWIEHSP-AEAAFITCGTDRSVRFWKE  226 (228)
Q Consensus       173 ~~d~~i~i~d~~~~~~~~~~~~-~~~~~v~~~~~~~-~~~~l~s~~~dg~i~vwd~  226 (228)
                      + ||+|++|+.++.+++.++.. +...+|+++..-| +...++.|...++|.+-++
T Consensus       368 s-DgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~  422 (508)
T KOG0275|consen  368 S-DGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNM  422 (508)
T ss_pred             C-CccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEec
Confidence            7 89999999999999988853 3455788888877 5567888888888887654

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=6e-33  Score=191.38  Aligned_cols=218  Identities=17%  Similarity=0.339  Sum_probs=186.9

Q ss_pred             CCcCCccccceeE------EEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeC
Q 040370            1 FFDFSKATAKRAF------RVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYS   74 (228)
Q Consensus         1 iwd~~~~~~~~~~------~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~   74 (228)
                      +||+..+..++-+      .+.-+..+|.|+.|+.|...+|+|+.||.|++|.+++|.++..+...   |...|+|+.|+
T Consensus       239 VWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrA---HtkGvt~l~FS  315 (508)
T KOG0275|consen  239 VWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRA---HTKGVTCLSFS  315 (508)
T ss_pred             eehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhhhh---hccCeeEEEEc
Confidence            5888776654433      33457899999999999999999999999999999999988766532   28899999999


Q ss_pred             CCCCeEEEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecc----
Q 040370           75 STGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGA----  150 (228)
Q Consensus        75 ~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~----  150 (228)
                      .|+..+++++.|.++++.-+.+|+.++.+.+|  ...|+...|.++|.++++++.||+|++|+.++.+++.+++..    
T Consensus       316 rD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGH--sSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~  393 (508)
T KOG0275|consen  316 RDNSQILSASFDQTVRIHGLKSGKCLKEFRGH--SSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDY  393 (508)
T ss_pred             cCcchhhcccccceEEEeccccchhHHHhcCc--cccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcc
Confidence            99999999999999999999999999999987  789999999999999999999999999999876655443211    


Q ss_pred             -----------------------------------------eeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCccee
Q 040370          151 -----------------------------------------THTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKV  189 (228)
Q Consensus       151 -----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~  189 (228)
                                                               .......+++.+|.|.++.+.|. |+.++.|...+|+..
T Consensus       394 ~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcigE-D~vlYCF~~~sG~LE  472 (508)
T KOG0275|consen  394 PVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVVRSFSSGKREGGDFINAILSPKGEWIYCIGE-DGVLYCFSVLSGKLE  472 (508)
T ss_pred             cceeEEEcCCCCceEEEEcCCCeEEEEeccceEEeeeccCCccCCceEEEEecCCCcEEEEEcc-CcEEEEEEeecCcee
Confidence                                                     01222345677899999999887 799999999999988


Q ss_pred             EEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEee
Q 040370          190 AKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWK  225 (228)
Q Consensus       190 ~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd  225 (228)
                      ..+ .-|...+..++-+|..+.|++-++||.+++|.
T Consensus       473 ~tl-~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk  507 (508)
T KOG0275|consen  473 RTL-PVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK  507 (508)
T ss_pred             eee-ecccccccccccCcccchhhhhcccchhhhcC
Confidence            887 68999999999999999999999999999996

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.98  E-value=2.2e-30  Score=171.04  Aligned_cols=211  Identities=16%  Similarity=0.244  Sum_probs=177.2

Q ss_pred             CCcCCccccceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeE
Q 040370            1 FFDFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMY   80 (228)
Q Consensus         1 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l   80 (228)
                      +|+...+.  .+.+..+|..+|..++.+.|+..|++|+.|..+.+||+++|+....+..+    .+.|+.++|+.+...+
T Consensus        43 LWNp~rg~--liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH----~aqVNtV~fNeesSVv  116 (307)
T KOG0316|consen   43 LWNPLRGA--LIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGH----LAQVNTVRFNEESSVV  116 (307)
T ss_pred             eecccccc--eeeeecCCCceeeeccccccccccccCCCCceEEEEEcccCeeeeecccc----cceeeEEEecCcceEE
Confidence            35444332  33445589999999999999999999999999999999999988777643    7889999999999999


Q ss_pred             EEEecCCeEEEEeCCCC--ceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeE
Q 040370           81 VTASKDGAIRLWDGVSA--NCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQ  158 (228)
Q Consensus        81 ~~~~~dg~v~iwd~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~  158 (228)
                      ++|+.|.++++||.++.  ++++.+...  ...|.++..+  +..+++|+.||+++.||++.|+....+.    ..++.+
T Consensus       117 ~SgsfD~s~r~wDCRS~s~ePiQildea--~D~V~Si~v~--~heIvaGS~DGtvRtydiR~G~l~sDy~----g~pit~  188 (307)
T KOG0316|consen  117 ASGSFDSSVRLWDCRSRSFEPIQILDEA--KDGVSSIDVA--EHEIVAGSVDGTVRTYDIRKGTLSSDYF----GHPITS  188 (307)
T ss_pred             EeccccceeEEEEcccCCCCccchhhhh--cCceeEEEec--ccEEEeeccCCcEEEEEeecceeehhhc----CCccee
Confidence            99999999999999865  566666554  6788888876  5679999999999999999998876664    456889


Q ss_pred             EEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEE--EEeCCCCcEEEEecCCCCEEEeeec
Q 040370          159 AVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRW--IEHSPAEAAFITCGTDRSVRFWKEI  227 (228)
Q Consensus       159 ~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~--~~~~~~~~~l~s~~~dg~i~vwd~~  227 (228)
                      +.|+++++..+++.- |+++++.|-.+|+.+... .+|...-..  ++++.....+++|++||.|.+||+.
T Consensus       189 vs~s~d~nc~La~~l-~stlrLlDk~tGklL~sY-kGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLv  257 (307)
T KOG0316|consen  189 VSFSKDGNCSLASSL-DSTLRLLDKETGKLLKSY-KGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLV  257 (307)
T ss_pred             EEecCCCCEEEEeec-cceeeecccchhHHHHHh-cccccceeeeeeeecccceeEEeccCCceEEEEEec
Confidence            999999999998766 799999999999999888 688765443  4566777899999999999999974

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.98  E-value=1.1e-30  Score=198.65  Aligned_cols=207  Identities=17%  Similarity=0.227  Sum_probs=170.2

Q ss_pred             ceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCC-CCCeEEEEecCCe
Q 040370           10 KRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSS-TGGMYVTASKDGA   88 (228)
Q Consensus        10 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~   88 (228)
                      ++...+.+|.+.|..+.|+. .++|++++.|.+|++|++...+++..+.     |...|+|++|+| |.++|++|+-||.
T Consensus       360 kP~~ef~GHt~DILDlSWSK-n~fLLSSSMDKTVRLWh~~~~~CL~~F~-----HndfVTcVaFnPvDDryFiSGSLD~K  433 (712)
T KOG0283|consen  360 KPFCEFKGHTADILDLSWSK-NNFLLSSSMDKTVRLWHPGRKECLKVFS-----HNDFVTCVAFNPVDDRYFISGSLDGK  433 (712)
T ss_pred             cchhhhhccchhheeccccc-CCeeEeccccccEEeecCCCcceeeEEe-----cCCeeEEEEecccCCCcEeecccccc
Confidence            45566779999999999995 5689999999999999999988877664     388999999999 8899999999999


Q ss_pred             EEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEeccee------eeeeeEEEEC
Q 040370           89 IRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATH------TQLRFQAVFN  162 (228)
Q Consensus        89 v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~------~~~~~~~~~~  162 (228)
                      |+||++...+...-...   ..-|++++|.|||++.+.|+.+|.+++|+.+..+.........+      ...++.+.|.
T Consensus       434 vRiWsI~d~~Vv~W~Dl---~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~  510 (712)
T KOG0283|consen  434 VRLWSISDKKVVDWNDL---RDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFF  510 (712)
T ss_pred             eEEeecCcCeeEeehhh---hhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEec
Confidence            99999987776655544   56899999999999999999999999999988776655432211      2368888888


Q ss_pred             CCCcE-EEEeeCCCCeEEEEEcCCcceeEEeecCCC-CCcEEEEeCCCCcEEEEecCCCCEEEeee
Q 040370          163 DTEEF-VLSIDEPSNEIVIWDALTAEKVAKWSSNHI-GAPRWIEHSPAEAAFITCGTDRSVRFWKE  226 (228)
Q Consensus       163 ~~~~~-~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~s~~~dg~i~vwd~  226 (228)
                      |...- ++++ ++|..|+|||.+....+..+...+. ..-....|+.||++|+++++|..|.+|+.
T Consensus       511 p~~~~~vLVT-SnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~  575 (712)
T KOG0283|consen  511 PGDPDEVLVT-SNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKN  575 (712)
T ss_pred             CCCCCeEEEe-cCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeC
Confidence            76653 4444 4489999999998888888743332 23456789999999999999999999995

>PTZ00421 coronin; Provisional

Probab=99.98  E-value=1.6e-29  Score=192.40  Aligned_cols=203  Identities=15%  Similarity=0.247  Sum_probs=158.2

Q ss_pred             CCcCCcccc-----ceeEEEeecCcceEEEEEeCCC-CEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeC
Q 040370            1 FFDFSKATA-----KRAFRVIQDTHNVRSVSFHPSG-DFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYS   74 (228)
Q Consensus         1 iwd~~~~~~-----~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~   74 (228)
                      |||+.....     .....+.+|...|.+++|+|++ ++|++|+.|+.|+|||+++++....+..   | ...|.+++|+
T Consensus       102 IWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~---h-~~~V~sla~s  177 (493)
T PTZ00421        102 GWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKC---H-SDQITSLEWN  177 (493)
T ss_pred             EEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcC---C-CCceEEEEEE
Confidence            577764321     2455667899999999999975 6999999999999999999876655432   2 7789999999


Q ss_pred             CCCCeEEEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEee----CCCeEEEEEccCCeeEEEEecc
Q 040370           75 STGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCG----KDSTVKLWEVSSGRLVKQYLGA  150 (228)
Q Consensus        75 ~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~----~d~~i~~wd~~~~~~~~~~~~~  150 (228)
                      |++++|++++.|+.|++||+++++.+..+..|. ......+.|.+++..+++++    .|+.|++||+++..........
T Consensus       178 pdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~-~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~  256 (493)
T PTZ00421        178 LDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHA-SAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDL  256 (493)
T ss_pred             CCCCEEEEecCCCEEEEEECCCCcEEEEEecCC-CCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEecc
Confidence            999999999999999999999999888887663 33445677888887777654    4789999999876543332222


Q ss_pred             eeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCC
Q 040370          151 THTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPA  208 (228)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~  208 (228)
                      .....+....|++++..+++++..|+.|++||+++++........+..++..++|.|.
T Consensus       257 d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~pk  314 (493)
T PTZ00421        257 DQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMPK  314 (493)
T ss_pred             CCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEeccc
Confidence            2334455667899999988887668999999999998877664556677888888884

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=4.7e-30  Score=195.24  Aligned_cols=200  Identities=15%  Similarity=0.244  Sum_probs=162.1

Q ss_pred             ecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceE-----------------------Ee------------------
Q 040370           17 QDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQC-----------------------YL------------------   55 (228)
Q Consensus        17 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~-----------------------~~------------------   55 (228)
                      .|.+.|.++.|++||+|||+|+.|+.|+||.+...+.                       ..                  
T Consensus       265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~  344 (712)
T KOG0283|consen  265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ  344 (712)
T ss_pred             ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence            7999999999999999999999999999998765000                       00                  


Q ss_pred             ----------------eeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECC
Q 040370           56 ----------------SANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTK  119 (228)
Q Consensus        56 ----------------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~  119 (228)
                                      .+....+ |.+.|.++.|+. .++|++++.|.+|++|++...+++..|.-   ...|+|++|+|
T Consensus       345 s~~~~~p~~~f~f~ekP~~ef~G-Ht~DILDlSWSK-n~fLLSSSMDKTVRLWh~~~~~CL~~F~H---ndfVTcVaFnP  419 (712)
T KOG0283|consen  345 SPCVLLPLKAFVFSEKPFCEFKG-HTADILDLSWSK-NNFLLSSSMDKTVRLWHPGRKECLKVFSH---NDFVTCVAFNP  419 (712)
T ss_pred             CccccCCCccccccccchhhhhc-cchhheeccccc-CCeeEeccccccEEeecCCCcceeeEEec---CCeeEEEEecc
Confidence                            0001113 388899999995 45899999999999999999999988853   78999999999


Q ss_pred             -CCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeec----
Q 040370          120 -DQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSS----  194 (228)
Q Consensus       120 -~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~----  194 (228)
                       |.+|+++|+-|+.++||++...+.+.-..   -...+++++|.|+|++.+++.. +|.+++|+....+.......    
T Consensus       420 vDDryFiSGSLD~KvRiWsI~d~~Vv~W~D---l~~lITAvcy~PdGk~avIGt~-~G~C~fY~t~~lk~~~~~~I~~~~  495 (712)
T KOG0283|consen  420 VDDRYFISGSLDGKVRLWSISDKKVVDWND---LRDLITAVCYSPDGKGAVIGTF-NGYCRFYDTEGLKLVSDFHIRLHN  495 (712)
T ss_pred             cCCCcEeecccccceEEeecCcCeeEeehh---hhhhheeEEeccCCceEEEEEe-ccEEEEEEccCCeEEEeeeEeecc
Confidence             88999999999999999998766554333   3478999999999999999766 79999999887766554421    


Q ss_pred             ----CCCCCcEEEEeCCC-CcEEEEecCCCCEEEeee
Q 040370          195 ----NHIGAPRWIEHSPA-EAAFITCGTDRSVRFWKE  226 (228)
Q Consensus       195 ----~~~~~v~~~~~~~~-~~~l~s~~~dg~i~vwd~  226 (228)
                          .|. .|+.+.|.|. ...++..+.|..|+|+|.
T Consensus       496 ~Kk~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~  531 (712)
T KOG0283|consen  496 KKKKQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDG  531 (712)
T ss_pred             CccccCc-eeeeeEecCCCCCeEEEecCCCceEEEec
Confidence                233 7999999983 345677789999999997

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.97  E-value=4.7e-30  Score=171.64  Aligned_cols=204  Identities=18%  Similarity=0.264  Sum_probs=171.9

Q ss_pred             EEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCC-CCCeEEEEecCCeEEE
Q 040370           13 FRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSS-TGGMYVTASKDGAIRL   91 (228)
Q Consensus        13 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~v~i   91 (228)
                      .++.+|...|.+++|+.+|..|++|+.|+++.+|+++..+..... ...+| .+.|-.++|+| ....|++++.|..|++
T Consensus        14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~-~~~gh-~~svdql~w~~~~~d~~atas~dk~ir~   91 (313)
T KOG1407|consen   14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKEL-VYRGH-TDSVDQLCWDPKHPDLFATASGDKTIRI   91 (313)
T ss_pred             HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhh-cccCC-CcchhhheeCCCCCcceEEecCCceEEE
Confidence            344578999999999999999999999999999999987543322 22334 77888999988 5678999999999999


Q ss_pred             EeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEe
Q 040370           92 WDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSI  171 (228)
Q Consensus        92 wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (228)
                      ||++.+++...+...   ..-..+.|+|+|++++.++.|..|.+.|.++.+.....+.   ...+..+.|+.++..++.+
T Consensus        92 wd~r~~k~~~~i~~~---~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~---~~e~ne~~w~~~nd~Fflt  165 (313)
T KOG1407|consen   92 WDIRSGKCTARIETK---GENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQF---KFEVNEISWNNSNDLFFLT  165 (313)
T ss_pred             EEeccCcEEEEeecc---CcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcc---cceeeeeeecCCCCEEEEe
Confidence            999999999888773   3345678999999999999999999999998877766553   3445567777777777766


Q ss_pred             eCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeee
Q 040370          172 DEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKE  226 (228)
Q Consensus       172 ~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~  226 (228)
                      .+ .|.|.|......+++..+ .+|.....||.|+|+|++||+|+.|-.+.+||+
T Consensus       166 ~G-lG~v~ILsypsLkpv~si-~AH~snCicI~f~p~GryfA~GsADAlvSLWD~  218 (313)
T KOG1407|consen  166 NG-LGCVEILSYPSLKPVQSI-KAHPSNCICIEFDPDGRYFATGSADALVSLWDV  218 (313)
T ss_pred             cC-CceEEEEecccccccccc-ccCCcceEEEEECCCCceEeeccccceeeccCh
Confidence            66 499999999999999888 799999999999999999999999999999996

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=2.2e-30  Score=198.56  Aligned_cols=202  Identities=20%  Similarity=0.444  Sum_probs=179.4

Q ss_pred             ecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCC
Q 040370           17 QDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVS   96 (228)
Q Consensus        17 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~   96 (228)
                      ..+..|..++|+|....++++-..|.|++||.+-+.++..+..   | .++|..++|+|++.+|++|+.|-.|++|+..+
T Consensus         7 skSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFde---H-dGpVRgv~FH~~qplFVSGGDDykIkVWnYk~   82 (1202)
T KOG0292|consen    7 SKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDE---H-DGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKT   82 (1202)
T ss_pred             cccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhc---c-CCccceeeecCCCCeEEecCCccEEEEEeccc
Confidence            3467899999999999999999999999999998887666553   3 89999999999999999999999999999999


Q ss_pred             CceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCC
Q 040370           97 ANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSN  176 (228)
Q Consensus        97 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  176 (228)
                      .+++.++.+|  -..|..+.|++.-.+++++|.|.+|+||+..+.+++..+.+  |...+.+..|+|....+++++- |.
T Consensus        83 rrclftL~GH--lDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltG--HnHYVMcAqFhptEDlIVSaSL-DQ  157 (1202)
T KOG0292|consen   83 RRCLFTLLGH--LDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTG--HNHYVMCAQFHPTEDLIVSASL-DQ  157 (1202)
T ss_pred             ceehhhhccc--cceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEec--CceEEEeeccCCccceEEEecc-cc
Confidence            9999999987  78999999999999999999999999999999999999998  6778999999999888887555 89


Q ss_pred             eEEEEEcCCcc----------------------------eeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370          177 EIVIWDALTAE----------------------------KVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEI  227 (228)
Q Consensus       177 ~i~i~d~~~~~----------------------------~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~  227 (228)
                      +||+||+...+                            .+.....+|...|+.++|+|.-.++++|+.|..|++|...
T Consensus       158 TVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmn  236 (1202)
T KOG0292|consen  158 TVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMN  236 (1202)
T ss_pred             eEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEec
Confidence            99999984211                            1222346899999999999999999999999999999863

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.97  E-value=5.9e-30  Score=181.98  Aligned_cols=208  Identities=19%  Similarity=0.251  Sum_probs=181.8

Q ss_pred             eeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEE
Q 040370           11 RAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIR   90 (228)
Q Consensus        11 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~   90 (228)
                      ....+.+|...|+.+.|+|+...+++++.|..|+||............    .|.++|+.+..+|.|.||++++.||+..
T Consensus       253 ~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~----~h~~~V~~ls~h~tgeYllsAs~d~~w~  328 (506)
T KOG0289|consen  253 ILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSR----PHEEPVTGLSLHPTGEYLLSASNDGTWA  328 (506)
T ss_pred             hhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccccc----cccccceeeeeccCCcEEEEecCCceEE
Confidence            344556899999999999999999999999999999987765433333    2388999999999999999999999999


Q ss_pred             EEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEE
Q 040370           91 LWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLS  170 (228)
Q Consensus        91 iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (228)
                      +.|++++..+...........+++.+|+|||..|.+|..|+.+++||+.++..+..|.+  |...+..+.|+.+|-++++
T Consensus       329 Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpg--ht~~vk~i~FsENGY~Lat  406 (506)
T KOG0289|consen  329 FSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPG--HTGPVKAISFSENGYWLAT  406 (506)
T ss_pred             EEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCC--CCCceeEEEeccCceEEEE
Confidence            99999999887776643457799999999999999999999999999999998888877  8899999999999999888


Q ss_pred             eeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEee
Q 040370          171 IDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWK  225 (228)
Q Consensus       171 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd  225 (228)
                      ++. |+.|++||+|..+...++......++.++.|.+.|.+|+.+|.|=.|.+++
T Consensus       407 ~ad-d~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~  460 (506)
T KOG0289|consen  407 AAD-DGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICK  460 (506)
T ss_pred             Eec-CCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEEEEe
Confidence            766 789999999999988888656666899999999999999998887777665

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.97  E-value=2.2e-30  Score=184.71  Aligned_cols=213  Identities=18%  Similarity=0.262  Sum_probs=167.2

Q ss_pred             eEEEeecCcceEEEEEeCC-CCEEEEecCCCeEEEEEcccceEEeeec-------cceeeeccceeeEEeCCC-CCeEEE
Q 040370           12 AFRVIQDTHNVRSVSFHPS-GDFLLAGTDHPIAHLYDVNTFQCYLSAN-------VPEISVNGAINQVRYSST-GGMYVT   82 (228)
Q Consensus        12 ~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~vw~~~~~~~~~~~~-------~~~~~~~~~i~~~~~~~~-~~~l~~   82 (228)
                      ....+.|.+.|+.+.+-|+ ...+|+++..+.|.|||..+........       ...+| .+.-.++.|++. .-.+++
T Consensus       117 i~~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH-~~eg~glsWn~~~~g~Lls  195 (422)
T KOG0264|consen  117 ISQKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGH-EKEGYGLSWNRQQEGTLLS  195 (422)
T ss_pred             EEEeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEee-cccccccccccccceeEee
Confidence            3344679999999999995 5566778889999999987643222211       22344 555678999985 448999


Q ss_pred             EecCCeEEEEeCCCCce-------eeEEecccccceeEEEEECC-CCCEEEEeeCCCeEEEEEccCCeeEEEEecceeee
Q 040370           83 ASKDGAIRLWDGVSANC-------VRSIVGAHGTAEATSANFTK-DQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQ  154 (228)
Q Consensus        83 ~~~dg~v~iwd~~~~~~-------~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~  154 (228)
                      ++.|+.|++||+.....       ...+..|  ...|..++|++ +...+++++.|+.+.|||+|++..........|..
T Consensus       196 ~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h--~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~  273 (422)
T KOG0264|consen  196 GSDDHTICLWDINAESKEDKVVDPKTIFSGH--EDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSA  273 (422)
T ss_pred             ccCCCcEEEEeccccccCCccccceEEeecC--CcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCC
Confidence            99999999999976432       2333333  88999999999 66789999999999999999532222222344888


Q ss_pred             eeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCC-CCcEEEEecCCCCEEEeeec
Q 040370          155 LRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSP-AEAAFITCGTDRSVRFWKEI  227 (228)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~vwd~~  227 (228)
                      .+.++.|+|-+.+++++++.|++|.+||+|+.........+|...|.++.|+| ....|+++|.|+++.+||+.
T Consensus       274 ~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls  347 (422)
T KOG0264|consen  274 EVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLS  347 (422)
T ss_pred             ceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEecc
Confidence            99999999999999999999999999999997765544489999999999999 46789999999999999974

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.97  E-value=6.2e-32  Score=187.71  Aligned_cols=209  Identities=20%  Similarity=0.348  Sum_probs=174.0

Q ss_pred             CCcCCccccceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeE
Q 040370            1 FFDFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMY   80 (228)
Q Consensus         1 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l   80 (228)
                      |||++++.  ....+++|.+.|..+.|+  +.++++++.|.++.+||+.....+.......+| ...|+.+.|+  .+++
T Consensus       261 vWDv~tge--~l~tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGH-rAaVNvVdfd--~kyI  333 (499)
T KOG0281|consen  261 VWDVNTGE--PLNTLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGH-RAAVNVVDFD--DKYI  333 (499)
T ss_pred             EEeccCCc--hhhHHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhh-hhheeeeccc--cceE
Confidence            58888544  445567899999999995  679999999999999999887655444555555 8999999996  5699


Q ss_pred             EEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEE
Q 040370           81 VTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAV  160 (228)
Q Consensus        81 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~  160 (228)
                      ++++.|.+|++|++.+++.++++.+|  ...|.|+.+  .++++++|+.|.+|++||+..|.+++.+++  |+..+.++.
T Consensus       334 VsASgDRTikvW~~st~efvRtl~gH--kRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeG--HEeLvRciR  407 (499)
T KOG0281|consen  334 VSASGDRTIKVWSTSTCEFVRTLNGH--KRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEG--HEELVRCIR  407 (499)
T ss_pred             EEecCCceEEEEeccceeeehhhhcc--cccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhc--hHHhhhhee
Confidence            99999999999999999999999887  677888876  488999999999999999999999999988  777788888


Q ss_pred             ECCCCcEEEEeeCCCCeEEEEEcCCcceeEEe--------ecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370          161 FNDTEEFVLSIDEPSNEIVIWDALTAEKVAKW--------SSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEI  227 (228)
Q Consensus       161 ~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~--------~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~  227 (228)
                      |.  .+.+++++. ||.|++||+..+......        ...|.+.|..+.|  |...+++++.|.+|.|||..
T Consensus       408 Fd--~krIVSGaY-DGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF--D~fqIvsssHddtILiWdFl  477 (499)
T KOG0281|consen  408 FD--NKRIVSGAY-DGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF--DEFQIISSSHDDTILIWDFL  477 (499)
T ss_pred             ec--Cceeeeccc-cceEEEEecccccCCcccccchHHHhhhhccceeEEEee--cceEEEeccCCCeEEEEEcC
Confidence            74  556666555 899999999877544221        1478999999999  56789999999999999963

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=4.2e-31  Score=199.45  Aligned_cols=215  Identities=15%  Similarity=0.307  Sum_probs=175.5

Q ss_pred             CCcCCcccc-ceeEEEeecCcceEEEEEeC-CCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCC-CC
Q 040370            1 FFDFSKATA-KRAFRVIQDTHNVRSVSFHP-SGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSS-TG   77 (228)
Q Consensus         1 iwd~~~~~~-~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~   77 (228)
                      +||++.... +....+..|...+++++|++ ...+|++|++||+|++||++..+....+...    ...|..++|+| .+
T Consensus       114 vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~n----SESiRDV~fsp~~~  189 (839)
T KOG0269|consen  114 VWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSN----SESIRDVKFSPGYG  189 (839)
T ss_pred             EEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeeccccccccccc----chhhhceeeccCCC
Confidence            588887432 33345558999999999999 6678899999999999999987766655542    77899999999 57


Q ss_pred             CeEEEEecCCeEEEEeCCCCc-eeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeee
Q 040370           78 GMYVTASKDGAIRLWDGVSAN-CVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLR  156 (228)
Q Consensus        78 ~~l~~~~~dg~v~iwd~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~  156 (228)
                      ..|+++...|.+++||++... ....+..|  .++|.++.|+|++.+||||+.|+.|+|||..+++.......+ ...++
T Consensus       190 ~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH--~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tIn-Tiapv  266 (839)
T KOG0269|consen  190 NKFASIHDSGYLQLWDLRQPDRCEKKLTAH--NGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTIN-TIAPV  266 (839)
T ss_pred             ceEEEecCCceEEEeeccCchhHHHHhhcc--cCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEe-eccee
Confidence            899999999999999999764 44555555  889999999999999999999999999999865543322211 45678


Q ss_pred             eEEEECCCCcEEEEeeC--CCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCC-CCcEEEEecCCCCEE
Q 040370          157 FQAVFNDTEEFVLSIDE--PSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSP-AEAAFITCGTDRSVR  222 (228)
Q Consensus       157 ~~~~~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~  222 (228)
                      ..+.|-|...+.+++++  .|-.|+|||++..-.+......|...++.++|.. +...|.+++.||+|.
T Consensus       267 ~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~  335 (839)
T KOG0269|consen  267 GRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVL  335 (839)
T ss_pred             eeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHHH
Confidence            89999999988877654  4789999999998877777689999999999966 567899999999764

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.97  E-value=9.2e-30  Score=173.26  Aligned_cols=204  Identities=19%  Similarity=0.359  Sum_probs=172.8

Q ss_pred             ecCcceEEEEEeC-CCCEEEEecCCCeEEEEEcccce------------EEeeeccceeeeccceeeEEeCC-CCCeEEE
Q 040370           17 QDTHNVRSVSFHP-SGDFLLAGTDHPIAHLYDVNTFQ------------CYLSANVPEISVNGAINQVRYSS-TGGMYVT   82 (228)
Q Consensus        17 ~~~~~v~~~~~~~-~~~~l~~~~~d~~i~vw~~~~~~------------~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~   82 (228)
                      .|.+.|+++...+ .|+++++|+.||.|.+||+++..            ++...+.+.. |+-.|.++.|-| |...|.+
T Consensus        41 ~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~-Hky~iss~~WyP~DtGmFts  119 (397)
T KOG4283|consen   41 PHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENG-HKYAISSAIWYPIDTGMFTS  119 (397)
T ss_pred             cCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCcc-ceeeeeeeEEeeecCceeec
Confidence            5889999999998 79999999999999999998643            1111222233 478899999999 6668899


Q ss_pred             EecCCeEEEEeCCCCceeeEEecccccceeEEEEECCC---CCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEE
Q 040370           83 ASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKD---QRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQA  159 (228)
Q Consensus        83 ~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~  159 (228)
                      ++-|.++++||.++-+....++.   ++.|.+-+++|-   ..++++|..|-.|++.|+.+|.....+.+  |...+.++
T Consensus       120 sSFDhtlKVWDtnTlQ~a~~F~m---e~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsG--Hr~~vlaV  194 (397)
T KOG4283|consen  120 SSFDHTLKVWDTNTLQEAVDFKM---EGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSG--HRDGVLAV  194 (397)
T ss_pred             ccccceEEEeecccceeeEEeec---CceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeecc--ccCceEEE
Confidence            99999999999999998888877   668899999983   34688888999999999999999999988  78889999


Q ss_pred             EECCCCcEEEEeeCCCCeEEEEEcCCc-ceeEEe-------------ecCCCCCcEEEEeCCCCcEEEEecCCCCEEEee
Q 040370          160 VFNDTEEFVLSIDEPSNEIVIWDALTA-EKVAKW-------------SSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWK  225 (228)
Q Consensus       160 ~~~~~~~~~~~~~~~d~~i~i~d~~~~-~~~~~~-------------~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd  225 (228)
                      .|+|..++++++++.||.|++||++.. .+...+             ...|.+.++.++|+.++.++++++.|.++++|+
T Consensus       195 ~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn  274 (397)
T KOG4283|consen  195 EWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWN  274 (397)
T ss_pred             EeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEee
Confidence            999999999999999999999999865 222211             246888999999999999999999999999998


Q ss_pred             e
Q 040370          226 E  226 (228)
Q Consensus       226 ~  226 (228)
                      .
T Consensus       275 ~  275 (397)
T KOG4283|consen  275 M  275 (397)
T ss_pred             c
Confidence            5

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.97  E-value=5.5e-29  Score=173.46  Aligned_cols=205  Identities=16%  Similarity=0.220  Sum_probs=179.8

Q ss_pred             eEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEE
Q 040370           12 AFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRL   91 (228)
Q Consensus        12 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i   91 (228)
                      ...+..|+.+|.+++.+|+.+++++|+.|..-.+|++.+++....+.   +| +..|+++.|+.+|.+||||+.+|.|+|
T Consensus        57 ~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~elt---gH-KDSVt~~~FshdgtlLATGdmsG~v~v  132 (399)
T KOG0296|consen   57 LVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELT---GH-KDSVTCCSFSHDGTLLATGDMSGKVLV  132 (399)
T ss_pred             eeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEec---CC-CCceEEEEEccCceEEEecCCCccEEE
Confidence            45667899999999999999999999999999999999998554443   33 899999999999999999999999999


Q ss_pred             EeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEe
Q 040370           92 WDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSI  171 (228)
Q Consensus        92 wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (228)
                      |+..++.....+...  ...+.-+.|+|.+..|+.|+.||.+.+|.+.++...+.+.+  |...+.+-.|.|+|+.++++
T Consensus       133 ~~~stg~~~~~~~~e--~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~G--h~~~ct~G~f~pdGKr~~tg  208 (399)
T KOG0296|consen  133 FKVSTGGEQWKLDQE--VEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSG--HNSPCTCGEFIPDGKRILTG  208 (399)
T ss_pred             EEcccCceEEEeecc--cCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecC--CCCCcccccccCCCceEEEE
Confidence            999999888877643  56788899999999999999999999999998878888877  77888899999999999886


Q ss_pred             eCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEee
Q 040370          172 DEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWK  225 (228)
Q Consensus       172 ~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd  225 (228)
                      .. ||+|++|+.++++++..+.........++.++..+..+++|+.++.+++-+
T Consensus       209 y~-dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~  261 (399)
T KOG0296|consen  209 YD-DGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVN  261 (399)
T ss_pred             ec-CceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEc
Confidence            55 899999999999999998655566788889998999999999988877643

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=2.9e-28  Score=166.96  Aligned_cols=204  Identities=16%  Similarity=0.232  Sum_probs=165.4

Q ss_pred             cCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccce------------------------------------
Q 040370           18 DTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPE------------------------------------   61 (228)
Q Consensus        18 ~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~------------------------------------   61 (228)
                      ....|+++.|+++|..+++++.|..+++||..+++.........                                    
T Consensus        13 ~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNky   92 (311)
T KOG1446|consen   13 TNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKY   92 (311)
T ss_pred             CCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecCce
Confidence            57899999999999999999999999999998877655433221                                    


Q ss_pred             ----eeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEE
Q 040370           62 ----ISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWE  137 (228)
Q Consensus        62 ----~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd  137 (228)
                          ..|...|++++.+|-+..+++++.|++|++||++..++...+...  .  -..++|.|+|-++|++.....|++||
T Consensus        93 lRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~--~--~pi~AfDp~GLifA~~~~~~~IkLyD  168 (311)
T KOG1446|consen   93 LRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLS--G--RPIAAFDPEGLIFALANGSELIKLYD  168 (311)
T ss_pred             EEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecC--C--CcceeECCCCcEEEEecCCCeEEEEE
Confidence                224889999999998899999999999999999988877766653  2  23578999999999998888999999


Q ss_pred             ccCC--eeEEEEecc-eeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCC---cEEEEeCCCCcE
Q 040370          138 VSSG--RLVKQYLGA-THTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGA---PRWIEHSPAEAA  211 (228)
Q Consensus       138 ~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~---v~~~~~~~~~~~  211 (228)
                      +|.-  .+..++... ........+.|+|+|++++.+.. .+.+++.|.-+|.....+ ..+...   .....|+||+++
T Consensus       169 ~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~-~s~~~~lDAf~G~~~~tf-s~~~~~~~~~~~a~ftPds~F  246 (311)
T KOG1446|consen  169 LRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTN-ASFIYLLDAFDGTVKSTF-SGYPNAGNLPLSATFTPDSKF  246 (311)
T ss_pred             ecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeC-CCcEEEEEccCCcEeeeE-eeccCCCCcceeEEECCCCcE
Confidence            9864  233344322 24556788999999999999877 599999999999988877 333332   257789999999


Q ss_pred             EEEecCCCCEEEeeec
Q 040370          212 FITCGTDRSVRFWKEI  227 (228)
Q Consensus       212 l~s~~~dg~i~vwd~~  227 (228)
                      +++|+.||+|.+|++.
T Consensus       247 vl~gs~dg~i~vw~~~  262 (311)
T KOG1446|consen  247 VLSGSDDGTIHVWNLE  262 (311)
T ss_pred             EEEecCCCcEEEEEcC
Confidence            9999999999999963

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.97  E-value=2.5e-29  Score=178.86  Aligned_cols=201  Identities=23%  Similarity=0.300  Sum_probs=176.8

Q ss_pred             CcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCCCc
Q 040370           19 THNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSAN   98 (228)
Q Consensus        19 ~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~   98 (228)
                      ...++++...|..+.+++|+.|..+.++|...++.+..+.   +| ...|+.+.++|+...+++++.|..|+||......
T Consensus       219 ~pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~---Gh-~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s  294 (506)
T KOG0289|consen  219 TPGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLK---GH-TKKITSVKFHKDLDTVITASADEIIRVWSVPLSS  294 (506)
T ss_pred             CCCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhcc---Cc-ceEEEEEEeccchhheeecCCcceEEeecccccc
Confidence            3578889888888899999999999999999888766554   33 7889999999999999999999999999988777


Q ss_pred             eeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCCeE
Q 040370           99 CVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEI  178 (228)
Q Consensus        99 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i  178 (228)
                      .......|  ..+|+.+..+|.|.||++++.|+...+.|++++..+.............+..|+|||..+.+ |..|+.+
T Consensus       295 ~~~~~~~h--~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgt-gt~d~~v  371 (506)
T KOG0289|consen  295 EPTSSRPH--EEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGT-GTPDGVV  371 (506)
T ss_pred             Cccccccc--cccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEec-cCCCceE
Confidence            66666555  78999999999999999999999999999999998877765434566889999999987666 5558999


Q ss_pred             EEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370          179 VIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEI  227 (228)
Q Consensus       179 ~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~  227 (228)
                      ++||++++.....+ .+|.++|..++|+.+|-+|++++.|+.|++||++
T Consensus       372 kiwdlks~~~~a~F-pght~~vk~i~FsENGY~Lat~add~~V~lwDLR  419 (506)
T KOG0289|consen  372 KIWDLKSQTNVAKF-PGHTGPVKAISFSENGYWLATAADDGSVKLWDLR  419 (506)
T ss_pred             EEEEcCCccccccC-CCCCCceeEEEeccCceEEEEEecCCeEEEEEeh
Confidence            99999999988888 6899999999999999999999999999999986

>PTZ00420 coronin; Provisional

Probab=99.97  E-value=4.9e-28  Score=185.52  Aligned_cols=180  Identities=13%  Similarity=0.183  Sum_probs=143.1

Q ss_pred             ecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCC-CCeEEEEecCCeEEEEeCCCCc--------eeeEEeccc
Q 040370           37 GTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSST-GGMYVTASKDGAIRLWDGVSAN--------CVRSIVGAH  107 (228)
Q Consensus        37 ~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~v~iwd~~~~~--------~~~~~~~~~  107 (228)
                      |+.++.|++|+......+..+.   +| .+.|.+++|+|+ +++|++|+.||.|++||+.++.        ....+..| 
T Consensus        50 GG~~gvI~L~~~~r~~~v~~L~---gH-~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH-  124 (568)
T PTZ00420         50 GGLIGAIRLENQMRKPPVIKLK---GH-TSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGH-  124 (568)
T ss_pred             CCceeEEEeeecCCCceEEEEc---CC-CCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecC-
Confidence            5667889999887654433332   33 889999999996 7899999999999999998642        22234444 


Q ss_pred             ccceeEEEEECCCCCE-EEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCc
Q 040370          108 GTAEATSANFTKDQRF-VLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTA  186 (228)
Q Consensus       108 ~~~~i~~~~~~~~~~~-l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~  186 (228)
                       ...|.+++|+|++.. +++++.|+.|++||+++++....+.   +...+.++.|+|++..+++++. |+.|++||++++
T Consensus       125 -~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~---~~~~V~SlswspdG~lLat~s~-D~~IrIwD~Rsg  199 (568)
T PTZ00420        125 -KKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN---MPKKLSSLKWNIKGNLLSGTCV-GKHMHIIDPRKQ  199 (568)
T ss_pred             -CCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe---cCCcEEEEEECCCCCEEEEEec-CCEEEEEECCCC
Confidence             678999999998875 5789999999999999988776664   3456889999999998877655 799999999999


Q ss_pred             ceeEEeecCCCCCcEEE-----EeCCCCcEEEEecCCC----CEEEeeec
Q 040370          187 EKVAKWSSNHIGAPRWI-----EHSPAEAAFITCGTDR----SVRFWKEI  227 (228)
Q Consensus       187 ~~~~~~~~~~~~~v~~~-----~~~~~~~~l~s~~~dg----~i~vwd~~  227 (228)
                      +.+..+ .+|.+.+...     .|++++.+|+++|.|+    .|+|||+.
T Consensus       200 ~~i~tl-~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr  248 (568)
T PTZ00420        200 EIASSF-HIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLK  248 (568)
T ss_pred             cEEEEE-ecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECC
Confidence            988877 6788765432     3568889999988774    69999975

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.97  E-value=8.9e-29  Score=188.91  Aligned_cols=201  Identities=19%  Similarity=0.397  Sum_probs=173.5

Q ss_pred             ceeEE-EeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCe
Q 040370           10 KRAFR-VIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGA   88 (228)
Q Consensus        10 ~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~   88 (228)
                      ..+.. +.+|.+.|.++++..-+.++++|+.|.++++||..++++...+..+    .+.|.++...  ...+++|+.|.+
T Consensus       239 ~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh----~stv~~~~~~--~~~~~sgs~D~t  312 (537)
T KOG0274|consen  239 YLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGH----TSSVRCLTID--PFLLVSGSRDNT  312 (537)
T ss_pred             eEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCC----CceEEEEEcc--CceEeeccCCce
Confidence            34444 7799999999999877889999999999999999999998887743    7788888775  456888999999


Q ss_pred             EEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEE
Q 040370           89 IRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFV  168 (228)
Q Consensus        89 v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (228)
                      |++|+++++..+..+.+|  ..+|.++..+  +.++++|+.|++|++||+.+++++..+.+  |...+.++.+.+. ..+
T Consensus       313 VkVW~v~n~~~l~l~~~h--~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~g--H~~~V~sl~~~~~-~~~  385 (537)
T KOG0274|consen  313 VKVWDVTNGACLNLLRGH--TGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSG--HTGRVYSLIVDSE-NRL  385 (537)
T ss_pred             EEEEeccCcceEEEeccc--cccEEEEEec--CCEEEEEecCceEEEEEhhhceeeeeecC--CcceEEEEEecCc-ceE
Confidence            999999999999999874  8899999987  88999999999999999999999999998  7778888877665 555


Q ss_pred             EEeeCCCCeEEEEEcCCc-ceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370          169 LSIDEPSNEIVIWDALTA-EKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEI  227 (228)
Q Consensus       169 ~~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~  227 (228)
                      +. |+.|+.|++||+++. +++..+ .+|.+-+..+.+  .+++|++++.|+.|++||..
T Consensus       386 ~S-gs~D~~IkvWdl~~~~~c~~tl-~~h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~  441 (537)
T KOG0274|consen  386 LS-GSLDTTIKVWDLRTKRKCIHTL-QGHTSLVSSLLL--RDNFLVSSSADGTIKLWDAE  441 (537)
T ss_pred             Ee-eeeccceEeecCCchhhhhhhh-cCCccccccccc--ccceeEeccccccEEEeecc
Confidence            55 555899999999999 788777 788888876665  67799999999999999863

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=7e-28  Score=165.10  Aligned_cols=207  Identities=22%  Similarity=0.329  Sum_probs=169.8

Q ss_pred             ceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeE
Q 040370           10 KRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAI   89 (228)
Q Consensus        10 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v   89 (228)
                      +.+..+.+|...|++++.+|-++.+++++.|++|++||++..++...+..      ..-..++|.|+|-++|++.....|
T Consensus        91 kylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~------~~~pi~AfDp~GLifA~~~~~~~I  164 (311)
T KOG1446|consen   91 KYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNL------SGRPIAAFDPEGLIFALANGSELI  164 (311)
T ss_pred             ceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEec------CCCcceeECCCCcEEEEecCCCeE
Confidence            44455669999999999999889999999999999999998776555443      233558899999999999888899


Q ss_pred             EEEeCCCC--ceeeEEecc-cccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeee-eeeEEEECCCC
Q 040370           90 RLWDGVSA--NCVRSIVGA-HGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQ-LRFQAVFNDTE  165 (228)
Q Consensus        90 ~iwd~~~~--~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  165 (228)
                      ++||++.-  .+...+... ....+.+.+.|+|+|++++.+...+.+++.|.-+|..+..+....... ....++|.|++
T Consensus       165 kLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds  244 (311)
T KOG1446|consen  165 KLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDS  244 (311)
T ss_pred             EEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCC
Confidence            99999874  334444332 236688999999999999999999999999999999888887644333 33678899999


Q ss_pred             cEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEee
Q 040370          166 EFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWK  225 (228)
Q Consensus       166 ~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd  225 (228)
                      ++++++.. ||+|.+|+++++..+..+...+.+++.++.|+|.-..+++++.  .+.+|=
T Consensus       245 ~Fvl~gs~-dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~s--~l~fw~  301 (311)
T KOG1446|consen  245 KFVLSGSD-DGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSASS--NLVFWL  301 (311)
T ss_pred             cEEEEecC-CCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeecCc--eEEEEe
Confidence            99998665 8999999999999999995558999999999998888887754  677773

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.97  E-value=4.3e-29  Score=181.27  Aligned_cols=216  Identities=19%  Similarity=0.281  Sum_probs=164.7

Q ss_pred             eeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEE-eeeccceeeeccceeeEEeCCCCCeEEEEecCCeE
Q 040370           11 RAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCY-LSANVPEISVNGAINQVRYSSTGGMYVTASKDGAI   89 (228)
Q Consensus        11 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v   89 (228)
                      ..+.+.+|+..|.++++.|.|.+|++|+.|..|++||+...... ..++.........|+++.|++.|..|++.+.....
T Consensus       159 hEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqa  238 (641)
T KOG0772|consen  159 HEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQA  238 (641)
T ss_pred             ceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcce
Confidence            44566688999999999999999999999999999999764321 11222222225679999999999999998888999


Q ss_pred             EEEeCCCCceeeEEec----------ccccceeEEEEECCC-CCEEEEeeCCCeEEEEEccCCee-EEEEe---cceeee
Q 040370           90 RLWDGVSANCVRSIVG----------AHGTAEATSANFTKD-QRFVLSCGKDSTVKLWEVSSGRL-VKQYL---GATHTQ  154 (228)
Q Consensus        90 ~iwd~~~~~~~~~~~~----------~~~~~~i~~~~~~~~-~~~l~~~~~d~~i~~wd~~~~~~-~~~~~---~~~~~~  154 (228)
                      +|+|-...+.....++          ..|...+++-+|+|. .+.+++++.||++++||+.+.+. ...++   ......
T Consensus       239 kl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv  318 (641)
T KOG0772|consen  239 KLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRV  318 (641)
T ss_pred             eEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCccc
Confidence            9999543333322221          123778999999995 46799999999999999986543 22232   122445


Q ss_pred             eeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcc--eeEEeecCCCC--CcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370          155 LRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAE--KVAKWSSNHIG--APRWIEHSPAEAAFITCGTDRSVRFWKEI  227 (228)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~--~~~~~~~~~~~--~v~~~~~~~~~~~l~s~~~dg~i~vwd~~  227 (228)
                      .+..+.|++++..+++++. ||.|.+|+..+..  +...+..+|..  .|++|.||++|++|++-|.|+++++||++
T Consensus       319 ~~tsC~~nrdg~~iAagc~-DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLr  394 (641)
T KOG0772|consen  319 PVTSCAWNRDGKLIAAGCL-DGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLR  394 (641)
T ss_pred             CceeeecCCCcchhhhccc-CCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeecc
Confidence            6788999999999777655 8999999975433  34444467877  89999999999999999999999999986

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.97  E-value=1.7e-28  Score=175.83  Aligned_cols=199  Identities=20%  Similarity=0.233  Sum_probs=167.3

Q ss_pred             ecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCC-
Q 040370           17 QDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGV-   95 (228)
Q Consensus        17 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~-   95 (228)
                      --+++|.|++-+|+|.+|+.|+..|.|++|.+.+|..+.....   | -..|+|+.|+.||.+|+||+.||.|.+|++- 
T Consensus        79 v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~a---H-YQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~  154 (476)
T KOG0646|consen   79 VLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSA---H-YQSITCLKFSDDGSHIITGSKDGAVLVWLLTD  154 (476)
T ss_pred             ccccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHh---h-ccceeEEEEeCCCcEEEecCCCccEEEEEEEe
Confidence            3478899999999999999999999999999999997765533   3 7889999999999999999999999999753 


Q ss_pred             --------CCceeeEEecccccceeEEEEECCC--CCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCC
Q 040370           96 --------SANCVRSIVGAHGTAEATSANFTKD--QRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTE  165 (228)
Q Consensus        96 --------~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (228)
                              +-++...+..|  .-+|+++...+.  ..+++|++.|.++++||+..+..+.++.   .+..+.+++.+|.+
T Consensus       155 lv~a~~~~~~~p~~~f~~H--tlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~---fp~si~av~lDpae  229 (476)
T KOG0646|consen  155 LVSADNDHSVKPLHIFSDH--TLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT---FPSSIKAVALDPAE  229 (476)
T ss_pred             ecccccCCCccceeeeccC--cceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe---cCCcceeEEEcccc
Confidence                    23455555554  889999887764  4689999999999999999999888876   46678899999999


Q ss_pred             cEEEEeeCCCCeEEEEEcCCcc----------------eeEEeecCCCC--CcEEEEeCCCCcEEEEecCCCCEEEeee
Q 040370          166 EFVLSIDEPSNEIVIWDALTAE----------------KVAKWSSNHIG--APRWIEHSPAEAAFITCGTDRSVRFWKE  226 (228)
Q Consensus       166 ~~~~~~~~~d~~i~i~d~~~~~----------------~~~~~~~~~~~--~v~~~~~~~~~~~l~s~~~dg~i~vwd~  226 (228)
                      ..++++++ +|.|.+.++....                ....+ .+|.+  +|+|++.+-||.+|++|+.||.|+|||+
T Consensus       230 ~~~yiGt~-~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~-~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi  306 (476)
T KOG0646|consen  230 RVVYIGTE-EGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVL-VGHENESAITCLAISTDGTLLLSGDEDGKVCVWDI  306 (476)
T ss_pred             cEEEecCC-cceEEeeehhcCCcccccccccccccccceeeee-ccccCCcceeEEEEecCccEEEeeCCCCCEEEEec
Confidence            99999766 7999998875432                12222 57887  9999999999999999999999999996

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.97  E-value=1.3e-29  Score=184.02  Aligned_cols=211  Identities=17%  Similarity=0.288  Sum_probs=165.9

Q ss_pred             EEEeecCcceEEEEEeC-CCCEEEEecCCCeEEEEEcccceEEee-ec-cceeeeccceeeEEeCCCCCeEEEEecCCeE
Q 040370           13 FRVIQDTHNVRSVSFHP-SGDFLLAGTDHPIAHLYDVNTFQCYLS-AN-VPEISVNGAINQVRYSSTGGMYVTASKDGAI   89 (228)
Q Consensus        13 ~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~vw~~~~~~~~~~-~~-~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v   89 (228)
                      ....+|...++|-+|+| +...|++++.||++++|++++.+.... +. ...+...-+++.++|+|+++.||+|+.||.|
T Consensus       262 ~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSI  341 (641)
T KOG0772|consen  262 YNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSI  341 (641)
T ss_pred             hccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCce
Confidence            34568999999999999 456789999999999999987542211 11 1111115578999999999999999999999


Q ss_pred             EEEeCCCCc--eeeEEe-cccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCe-eEEEEecceeeeeeeEEEECCCC
Q 040370           90 RLWDGVSAN--CVRSIV-GAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGR-LVKQYLGATHTQLRFQAVFNDTE  165 (228)
Q Consensus        90 ~iwd~~~~~--~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  165 (228)
                      .+|+..+..  ....+. .|.....|+|+.|+++|++|++-+.|+++++||+++.+ ++....+-........++|+|+.
T Consensus       342 Q~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~  421 (641)
T KOG0772|consen  342 QIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDD  421 (641)
T ss_pred             eeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCc
Confidence            999976542  223333 34334589999999999999999999999999999865 44555544455566789999999


Q ss_pred             cEEEEeeC-----CCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEe
Q 040370          166 EFVLSIDE-----PSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFW  224 (228)
Q Consensus       166 ~~~~~~~~-----~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vw  224 (228)
                      +.++++.+     ..|.+.+||..+.+.+..+ .-....|..+.|+|.-+.|+.|+.||.+++|
T Consensus       422 kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki-~i~~aSvv~~~WhpkLNQi~~gsgdG~~~vy  484 (641)
T KOG0772|consen  422 KLILTGTSAPNGMTAGTLFFFDRMTLDTVYKI-DISTASVVRCLWHPKLNQIFAGSGDGTAHVY  484 (641)
T ss_pred             eEEEecccccCCCCCceEEEEeccceeeEEEe-cCCCceEEEEeecchhhheeeecCCCceEEE
Confidence            99998654     2478999999999988888 3447789999999988889999999999875

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.97  E-value=1.3e-29  Score=179.15  Aligned_cols=212  Identities=17%  Similarity=0.291  Sum_probs=177.8

Q ss_pred             CCcCCccccceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeE
Q 040370            1 FFDFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMY   80 (228)
Q Consensus         1 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l   80 (228)
                      +|+.+....  ..++.+|++.|+++.|......+++|+.|.+|++||+.+..+......     .+.+..|..+  ...+
T Consensus       245 ~Wnvd~~r~--~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~-----~S~cnDI~~~--~~~~  315 (459)
T KOG0288|consen  245 LWNVDSLRL--RHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLP-----GSQCNDIVCS--ISDV  315 (459)
T ss_pred             eeeccchhh--hhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheeccccc-----cccccceEec--ceee
Confidence            466664433  344557999999999988777799999999999999999887766544     4556667766  4568


Q ss_pred             EEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecce--eeeeeeE
Q 040370           81 VTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGAT--HTQLRFQ  158 (228)
Q Consensus        81 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~--~~~~~~~  158 (228)
                      ++|-.|+.|++||.++.........   .+.|+++..++++..+.+++.|.++.+.|+++.+....+....  .......
T Consensus       316 ~SgH~DkkvRfwD~Rs~~~~~sv~~---gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtr  392 (459)
T KOG0288|consen  316 ISGHFDKKVRFWDIRSADKTRSVPL---GGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTR  392 (459)
T ss_pred             eecccccceEEEeccCCceeeEeec---CcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccce
Confidence            8999999999999999999998887   4589999999999999999999999999999988777765321  2334678


Q ss_pred             EEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCC-CcEEEEeCCCCcEEEEecCCCCEEEee
Q 040370          159 AVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIG-APRWIEHSPAEAAFITCGTDRSVRFWK  225 (228)
Q Consensus       159 ~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~s~~~dg~i~vwd  225 (228)
                      +.|+|++.|+++++. ||.|+||++.+++....+...+.. .|++++|+|.|..|++++.++.+.+|.
T Consensus       393 vvfSpd~~YvaAGS~-dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~  459 (459)
T KOG0288|consen  393 VVFSPDGSYVAAGSA-DGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT  459 (459)
T ss_pred             eEECCCCceeeeccC-CCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence            899999999999666 899999999999998888555555 799999999999999999999999993

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.97  E-value=1.9e-28  Score=191.12  Aligned_cols=214  Identities=15%  Similarity=0.282  Sum_probs=173.5

Q ss_pred             ceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEccc---c------------eEEeeeccceeeeccceeeEEeC
Q 040370           10 KRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNT---F------------QCYLSANVPEISVNGAINQVRYS   74 (228)
Q Consensus        10 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~---~------------~~~~~~~~~~~~~~~~i~~~~~~   74 (228)
                      +.......|.+.|+|+.|+|||++||+|++|+.|.||....   +            +.........+| .+.|..++|+
T Consensus        60 k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H-~~DV~Dv~Ws  138 (942)
T KOG0973|consen   60 KHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGH-DSDVLDVNWS  138 (942)
T ss_pred             hhheeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecC-CCccceeccC
Confidence            44556668999999999999999999999999999999873   0            011122233344 8999999999


Q ss_pred             CCCCeEEEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEe------
Q 040370           75 STGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYL------  148 (228)
Q Consensus        75 ~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~------  148 (228)
                      |++.++++++.|++|.+||.++.+.+..+.+|  ...|..+.|.|-|+||++-+.|++|++|++.+....+.+.      
T Consensus       139 p~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H--~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~  216 (942)
T KOG0973|consen  139 PDDSLLVSVSLDNSVIIWNAKTFELLKVLRGH--QSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEES  216 (942)
T ss_pred             CCccEEEEecccceEEEEccccceeeeeeecc--cccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhC
Confidence            99999999999999999999999999999887  7799999999999999999999999999965422111110      


Q ss_pred             --------------------------------------------cceeeeeeeEEEECCC---------------CcE-E
Q 040370          149 --------------------------------------------GATHTQLRFQAVFNDT---------------EEF-V  168 (228)
Q Consensus       149 --------------------------------------------~~~~~~~~~~~~~~~~---------------~~~-~  168 (228)
                                                                  .-.|..++..+.|+|.               ..| +
T Consensus       217 ~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i  296 (942)
T KOG0973|consen  217 PLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCI  296 (942)
T ss_pred             CCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEE
Confidence                                                        0114556777888762               122 7


Q ss_pred             EEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeee
Q 040370          169 LSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKE  226 (228)
Q Consensus       169 ~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~  226 (228)
                      +++|+.|++|-||.....+++.....-....|..++|+|||..|+.+|.||+|.+...
T Consensus       297 ~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~F  354 (942)
T KOG0973|consen  297 AAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHF  354 (942)
T ss_pred             EEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEc
Confidence            8889999999999998888887775566789999999999999999999999998764

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.97  E-value=3.2e-28  Score=165.95  Aligned_cols=201  Identities=17%  Similarity=0.274  Sum_probs=145.4

Q ss_pred             cCcceEEEEEeC-CCCEEEEecCCCeEEEEEcccc-eEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCC
Q 040370           18 DTHNVRSVSFHP-SGDFLLAGTDHPIAHLYDVNTF-QCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGV   95 (228)
Q Consensus        18 ~~~~v~~~~~~~-~~~~l~~~~~d~~i~vw~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~   95 (228)
                      ..+.|.+++||| ...++++|+.|++||+|+++.. ....  +... .|.++|.+++|+.+|..+++|+.|+.+++||+.
T Consensus        26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~--ka~~-~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~  102 (347)
T KOG0647|consen   26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP--KAQQ-SHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLA  102 (347)
T ss_pred             cccchheeEeccccCceEEecccCCceEEEEEecCCcccc--hhhh-ccCCCeEEEEEccCCceEEeeccCCceEEEEcc
Confidence            467899999999 5566779999999999999874 3332  2222 238999999999999999999999999999999


Q ss_pred             CCceeeEEecccccceeEEEEECCCCC--EEEEeeCCCeEEEEEccCCeeEEEEeccee---------------------
Q 040370           96 SANCVRSIVGAHGTAEATSANFTKDQR--FVLSCGKDSTVKLWEVSSGRLVKQYLGATH---------------------  152 (228)
Q Consensus        96 ~~~~~~~~~~~~~~~~i~~~~~~~~~~--~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~---------------------  152 (228)
                      +++ ...+..|  ..+|..+.|-+...  .|+||+.|++|++||+|...++.++..+..                     
T Consensus       103 S~Q-~~~v~~H--d~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~  179 (347)
T KOG0647|consen  103 SGQ-VSQVAAH--DAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLYPMAVVATAERHIA  179 (347)
T ss_pred             CCC-eeeeeec--ccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhccCceeEEEecCCcEE
Confidence            995 4445555  78999999988655  899999999999999998877766543211                     


Q ss_pred             ------------------eeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcce--eEEeecCCC---------CCcEEE
Q 040370          153 ------------------TQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEK--VAKWSSNHI---------GAPRWI  203 (228)
Q Consensus       153 ------------------~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~--~~~~~~~~~---------~~v~~~  203 (228)
                                        .-.+.+++..++....+.++- +|.+.+..+..+.+  -..+ .-|.         ..|++|
T Consensus       180 vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsi-EGrv~iq~id~~~~~~nFtF-kCHR~~~~~~~~VYaVNsi  257 (347)
T KOG0647|consen  180 VYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSI-EGRVAIQYIDDPNPKDNFTF-KCHRSTNSVNDDVYAVNSI  257 (347)
T ss_pred             EEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeee-cceEEEEecCCCCccCceeE-EEeccCCCCCCceEEecce
Confidence                              001122333333333333222 46666666555422  2222 2232         257889


Q ss_pred             EeCCCCcEEEEecCCCCEEEeee
Q 040370          204 EHSPAEAAFITCGTDRSVRFWKE  226 (228)
Q Consensus       204 ~~~~~~~~l~s~~~dg~i~vwd~  226 (228)
                      +|+|.-..|+|+|.||++.+||-
T Consensus       258 ~FhP~hgtlvTaGsDGtf~FWDk  280 (347)
T KOG0647|consen  258 AFHPVHGTLVTAGSDGTFSFWDK  280 (347)
T ss_pred             EeecccceEEEecCCceEEEecc
Confidence            99999999999999999999995

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.97  E-value=2.8e-27  Score=155.98  Aligned_cols=208  Identities=14%  Similarity=0.296  Sum_probs=168.7

Q ss_pred             EEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeee--ccceeeeccceeeEEeCCC----CCeEEEEe-cC
Q 040370           14 RVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSA--NVPEISVNGAINQVRYSST----GGMYVTAS-KD   86 (228)
Q Consensus        14 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~----~~~l~~~~-~d   86 (228)
                      +...|.+.|.|.+|+|+|+++++|++|.+|++...+...+...-  .....| .+.|..++|..+    +..|++++ .|
T Consensus        84 r~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmh-dgtirdl~fld~~~s~~~il~s~gagd  162 (350)
T KOG0641|consen   84 RNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMH-DGTIRDLAFLDDPESGGAILASAGAGD  162 (350)
T ss_pred             eccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeec-CCceeeeEEecCCCcCceEEEecCCCc
Confidence            34468899999999999999999999999999877654432221  112233 889999999643    45666655 57


Q ss_pred             CeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecce-----eeeeeeEEEE
Q 040370           87 GAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGAT-----HTQLRFQAVF  161 (228)
Q Consensus        87 g~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~-----~~~~~~~~~~  161 (228)
                      ..|++-|...++..+.+.+|  .+.|.++ ++-++-.+++|+.|.+|++||++-...+.++....     ....+..++.
T Consensus       163 c~iy~tdc~~g~~~~a~sgh--tghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~v  239 (350)
T KOG0641|consen  163 CKIYITDCGRGQGFHALSGH--TGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAV  239 (350)
T ss_pred             ceEEEeecCCCCcceeecCC--cccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEE
Confidence            78888899999999998887  5666665 34468899999999999999999888887764322     2467888999


Q ss_pred             CCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370          162 NDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEI  227 (228)
Q Consensus       162 ~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~  227 (228)
                      .|.|+.+++ |..|....+||++.++.+..+ ..|...|.++.|+|...++++|+.|..|++-|+.
T Consensus       240 dpsgrll~s-g~~dssc~lydirg~r~iq~f-~phsadir~vrfsp~a~yllt~syd~~ikltdlq  303 (350)
T KOG0641|consen  240 DPSGRLLAS-GHADSSCMLYDIRGGRMIQRF-HPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQ  303 (350)
T ss_pred             CCCcceeee-ccCCCceEEEEeeCCceeeee-CCCccceeEEEeCCCceEEEEecccceEEEeecc
Confidence            999998877 455899999999999999998 7899999999999999999999999999998863

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.97  E-value=2.1e-28  Score=163.74  Aligned_cols=210  Identities=12%  Similarity=0.176  Sum_probs=177.0

Q ss_pred             CcCCccccceeEEEeecCcceEEEEEeC-CCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeE
Q 040370            2 FDFSKATAKRAFRVIQDTHNVRSVSFHP-SGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMY   80 (228)
Q Consensus         2 wd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l   80 (228)
                      |++............+|.+.|-.++|+| +.+.|++++.|.+|++||...+++.......     +.=.-+.|+|+|+++
T Consensus        47 ~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~-----~eni~i~wsp~g~~~  121 (313)
T KOG1407|consen   47 WNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETK-----GENINITWSPDGEYI  121 (313)
T ss_pred             EEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeecc-----CcceEEEEcCCCCEE
Confidence            4444333333444558999999999998 6789999999999999999999987766543     333457899999999


Q ss_pred             EEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEE
Q 040370           81 VTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAV  160 (228)
Q Consensus        81 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~  160 (228)
                      +.++.|..|...|.++.+.....+.   ...+.-++|+.++..++.....|.|.|......+++..++.  |+....++.
T Consensus       122 ~~~~kdD~it~id~r~~~~~~~~~~---~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~A--H~snCicI~  196 (313)
T KOG1407|consen  122 AVGNKDDRITFIDARTYKIVNEEQF---KFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKA--HPSNCICIE  196 (313)
T ss_pred             EEecCcccEEEEEecccceeehhcc---cceeeeeeecCCCCEEEEecCCceEEEEecccccccccccc--CCcceEEEE
Confidence            9999999999999998887776655   55788899998888877777789999999998899999887  678899999


Q ss_pred             ECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEE
Q 040370          161 FNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRF  223 (228)
Q Consensus       161 ~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~v  223 (228)
                      |+|+|+|+++++. |..+.+||+...-+...+ ..+.-+|..+.|+.+|++||++|+|..|-|
T Consensus       197 f~p~GryfA~GsA-DAlvSLWD~~ELiC~R~i-sRldwpVRTlSFS~dg~~lASaSEDh~IDI  257 (313)
T KOG1407|consen  197 FDPDGRYFATGSA-DALVSLWDVDELICERCI-SRLDWPVRTLSFSHDGRMLASASEDHFIDI  257 (313)
T ss_pred             ECCCCceEeeccc-cceeeccChhHhhhheee-ccccCceEEEEeccCcceeeccCccceEEe
Confidence            9999999998665 899999999988888887 678999999999999999999999987755

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=1.3e-27  Score=172.16  Aligned_cols=197  Identities=19%  Similarity=0.295  Sum_probs=162.8

Q ss_pred             EEeecCcceEEEEEeC-CCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCC-CCeEEEEecCCeEEE
Q 040370           14 RVIQDTHNVRSVSFHP-SGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSST-GGMYVTASKDGAIRL   91 (228)
Q Consensus        14 ~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~v~i   91 (228)
                      .+.+|+.+|..+.|+| ++..|++|++|+.+++||+.+......+   .+| ...|.|.+|+|. +..++||+.||.|++
T Consensus       105 ~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l---~~h-tDYVR~g~~~~~~~hivvtGsYDg~vrl  180 (487)
T KOG0310|consen  105 QLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAEL---SGH-TDYVRCGDISPANDHIVVTGSYDGKVRL  180 (487)
T ss_pred             HHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEe---cCC-cceeEeeccccCCCeEEEecCCCceEEE
Confidence            3457999999999999 5667788999999999999987742222   233 899999999995 558999999999999


Q ss_pred             EeCCCC-ceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCee-EEEEecceeeeeeeEEEECCCCcEEE
Q 040370           92 WDGVSA-NCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRL-VKQYLGATHTQLRFQAVFNDTEEFVL  169 (228)
Q Consensus        92 wd~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (228)
                      ||++.. ..+.++..   ..+|..+.+-|.|..+++++. ..+++||+-+|.. +..+..  |...++++.+..++..++
T Consensus       181 ~DtR~~~~~v~elnh---g~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~qll~~~~~--H~KtVTcL~l~s~~~rLl  254 (487)
T KOG0310|consen  181 WDTRSLTSRVVELNH---GCPVESVLALPSGSLIASAGG-NSVKVWDLTTGGQLLTSMFN--HNKTVTCLRLASDSTRLL  254 (487)
T ss_pred             EEeccCCceeEEecC---CCceeeEEEcCCCCEEEEcCC-CeEEEEEecCCceehhhhhc--ccceEEEEEeecCCceEe
Confidence            999987 44444432   779999999999999998874 5799999986554 444433  788899999999998888


Q ss_pred             EeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEE
Q 040370          170 SIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRF  223 (228)
Q Consensus       170 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~v  223 (228)
                      +++- |+.+++||..+-+.+..+  ...++|.+++.+|+++.++.|..||.+.+
T Consensus       255 S~sL-D~~VKVfd~t~~Kvv~s~--~~~~pvLsiavs~dd~t~viGmsnGlv~~  305 (487)
T KOG0310|consen  255 SGSL-DRHVKVFDTTNYKVVHSW--KYPGPVLSIAVSPDDQTVVIGMSNGLVSI  305 (487)
T ss_pred             eccc-ccceEEEEccceEEEEee--ecccceeeEEecCCCceEEEecccceeee
Confidence            8665 899999998888888887  67899999999999999999999998754

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.96  E-value=7.8e-28  Score=168.54  Aligned_cols=215  Identities=17%  Similarity=0.288  Sum_probs=168.7

Q ss_pred             ccceeEEEeecCcceEEEEEeC-CCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCC-CCeEEEEec
Q 040370            8 TAKRAFRVIQDTHNVRSVSFHP-SGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSST-GGMYVTASK   85 (228)
Q Consensus         8 ~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~   85 (228)
                      ..++++++.+|...=.+++||| ....|++|..-+.|++|...++.-........+ |...|..++|||. ...|++||.
T Consensus       200 ~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~g-H~~SVEDLqWSptE~~vfaScS~  278 (440)
T KOG0302|consen  200 EFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTG-HTKSVEDLQWSPTEDGVFASCSC  278 (440)
T ss_pred             ccCceEEecccCccceeeecccccccccccCccccceEeeeeccCceeecCccccc-cccchhhhccCCccCceEEeeec
Confidence            3467788889999999999999 444688998889999999999776555555555 4999999999995 568999999


Q ss_pred             CCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccC---CeeEEEEecceeeeeeeEEEEC
Q 040370           86 DGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSS---GRLVKQYLGATHTQLRFQAVFN  162 (228)
Q Consensus        86 dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~---~~~~~~~~~~~~~~~~~~~~~~  162 (228)
                      ||+|+|||++.+.....+....+...|+.+.|+..-.+|++|+.||+++|||+|+   ++++..++.  |..+++++.|+
T Consensus       279 DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~--Hk~pItsieW~  356 (440)
T KOG0302|consen  279 DGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKY--HKAPITSIEWH  356 (440)
T ss_pred             CceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEe--ccCCeeEEEec
Confidence            9999999999984433332233377999999999888999999999999999986   456777776  78899999999


Q ss_pred             CCCcEEEEeeCCCCeEEEEEcCCcce---------------eEEeecCC--CCCcEEEEeCCC-CcEEEEecCCCCEEEe
Q 040370          163 DTEEFVLSIDEPSNEIVIWDALTAEK---------------VAKWSSNH--IGAPRWIEHSPA-EAAFITCGTDRSVRFW  224 (228)
Q Consensus       163 ~~~~~~~~~~~~d~~i~i~d~~~~~~---------------~~~~~~~~--~~~v~~~~~~~~-~~~l~s~~~dg~i~vw  224 (228)
                      |....++++++.|.+|.+||+....-               +..+..-|  ...+-.+.|+++ ..+|++.+.|| +.||
T Consensus       357 p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG-fnVf  435 (440)
T KOG0302|consen  357 PHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG-FNVF  435 (440)
T ss_pred             cccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc-eeEE
Confidence            99888887788899999999853211               11122234  345788999984 45888888888 6666


Q ss_pred             ee
Q 040370          225 KE  226 (228)
Q Consensus       225 d~  226 (228)
                      ..
T Consensus       436 kt  437 (440)
T KOG0302|consen  436 KT  437 (440)
T ss_pred             Ee
Confidence            54

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.96  E-value=1.8e-27  Score=179.62  Aligned_cols=205  Identities=17%  Similarity=0.218  Sum_probs=176.5

Q ss_pred             eEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEE
Q 040370           12 AFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRL   91 (228)
Q Consensus        12 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i   91 (228)
                      .+.+.+|...|++++++.+...+++|+. +.+++|+..+.+++.++.      .+.+.+..|-|.++++++|...|.+.+
T Consensus       366 ~i~~~GHR~dVRsl~vS~d~~~~~Sga~-~SikiWn~~t~kciRTi~------~~y~l~~~Fvpgd~~Iv~G~k~Gel~v  438 (888)
T KOG0306|consen  366 NIEIGGHRSDVRSLCVSSDSILLASGAG-ESIKIWNRDTLKCIRTIT------CGYILASKFVPGDRYIVLGTKNGELQV  438 (888)
T ss_pred             eeeeccchhheeEEEeecCceeeeecCC-CcEEEEEccCcceeEEec------cccEEEEEecCCCceEEEeccCCceEE
Confidence            4667799999999999988888887764 679999999999988776      557899999999999999999999999


Q ss_pred             EeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCC-----eeEEEEe-----cceeeeeeeEEEE
Q 040370           92 WDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSG-----RLVKQYL-----GATHTQLRFQAVF  161 (228)
Q Consensus        92 wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~-----~~~~~~~-----~~~~~~~~~~~~~  161 (228)
                      +|+.+...+..+..|  .+.+.+++.+||+..+++|+.|.+|++||..-.     .....+.     .-.-...+.++.+
T Consensus       439 fdlaS~~l~Eti~AH--dgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~  516 (888)
T KOG0306|consen  439 FDLASASLVETIRAH--DGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSV  516 (888)
T ss_pred             EEeehhhhhhhhhcc--ccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEE
Confidence            999999988888865  889999999999999999999999999997521     1111111     1113567889999


Q ss_pred             CCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370          162 NDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEI  227 (228)
Q Consensus       162 ~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~  227 (228)
                      +|++++++++=- |+++++|-+.+.+....+ -+|.-||.++..+||+++++|||.|..|++|-+.
T Consensus       517 Spdgk~LaVsLL-dnTVkVyflDtlKFflsL-YGHkLPV~smDIS~DSklivTgSADKnVKiWGLd  580 (888)
T KOG0306|consen  517 SPDGKLLAVSLL-DNTVKVYFLDTLKFFLSL-YGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLD  580 (888)
T ss_pred             cCCCcEEEEEec-cCeEEEEEecceeeeeee-cccccceeEEeccCCcCeEEeccCCCceEEeccc
Confidence            999999998665 899999999999988888 6999999999999999999999999999999763

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.96  E-value=4.8e-29  Score=173.83  Aligned_cols=202  Identities=16%  Similarity=0.302  Sum_probs=164.5

Q ss_pred             EEEeecCcceEEEEEeCCC-CEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEE
Q 040370           13 FRVIQDTHNVRSVSFHPSG-DFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRL   91 (228)
Q Consensus        13 ~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i   91 (228)
                      -.+.+|.+.|.|++=+|.. ..+++|+.||.|++||+....+...+..+    .+.|..+++..  ..+++++.|.+|+.
T Consensus        60 ~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH----~G~V~Gi~v~~--~~~~tvgdDKtvK~  133 (433)
T KOG0268|consen   60 GSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAH----EGLVRGICVTQ--TSFFTVGDDKTVKQ  133 (433)
T ss_pred             hhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecc----cCceeeEEecc--cceEEecCCcceee
Confidence            3557899999999999976 78999999999999999987776666543    78899999975  56888888988888


Q ss_pred             EeCCC--------------------------------------CceeeEEecccccceeEEEEECC-CCCEEEEeeCCCe
Q 040370           92 WDGVS--------------------------------------ANCVRSIVGAHGTAEATSANFTK-DQRFVLSCGKDST  132 (228)
Q Consensus        92 wd~~~--------------------------------------~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~  132 (228)
                      |.++-                                      ..+++.+.-.  ...|.++.|+| ....|++++.|+.
T Consensus       134 wk~~~~p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG--~Dti~svkfNpvETsILas~~sDrs  211 (433)
T KOG0268|consen  134 WKIDGPPLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWG--ADSISSVKFNPVETSILASCASDRS  211 (433)
T ss_pred             eeccCCcceeeeccccccccccccccccccccCceeeecccccCCccceeecC--CCceeEEecCCCcchheeeeccCCc
Confidence            86332                                      1122222221  45678888999 4457888889999


Q ss_pred             EEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEE
Q 040370          133 VKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAF  212 (228)
Q Consensus       133 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  212 (228)
                      |.+||++++.++.....   ......++|+| ..+.++++.+|..++.||++..+.......+|.+.|.+++|+|.|+-+
T Consensus       212 IvLyD~R~~~Pl~KVi~---~mRTN~IswnP-eafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~Ef  287 (433)
T KOG0268|consen  212 IVLYDLRQASPLKKVIL---TMRTNTICWNP-EAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEF  287 (433)
T ss_pred             eEEEecccCCccceeee---eccccceecCc-cccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchh
Confidence            99999999998887763   34456789999 777777788899999999999887777668999999999999999999


Q ss_pred             EEecCCCCEEEeee
Q 040370          213 ITCGTDRSVRFWKE  226 (228)
Q Consensus       213 ~s~~~dg~i~vwd~  226 (228)
                      ++||.|.+|+||..
T Consensus       288 vsgsyDksIRIf~~  301 (433)
T KOG0268|consen  288 VSGSYDKSIRIFPV  301 (433)
T ss_pred             ccccccceEEEeec
Confidence            99999999999975

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=5.3e-28  Score=160.46  Aligned_cols=215  Identities=17%  Similarity=0.201  Sum_probs=167.3

Q ss_pred             ceeEEEeecCcceEEEEEeC--CCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCC--CCeEEEEec
Q 040370           10 KRAFRVIQDTHNVRSVSFHP--SGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSST--GGMYVTASK   85 (228)
Q Consensus        10 ~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~   85 (228)
                      +...++.+|.+||..++|..  -|.+||+++.||.|.||.-++++- ........| ...|++++|.|.  |-.|++++.
T Consensus        47 ~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w-~k~~e~~~h-~~SVNsV~wapheygl~LacasS  124 (299)
T KOG1332|consen   47 KLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRW-TKAYEHAAH-SASVNSVAWAPHEYGLLLACASS  124 (299)
T ss_pred             eeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCch-hhhhhhhhh-cccceeecccccccceEEEEeeC
Confidence            66778889999999999954  799999999999999999888843 222233334 899999999995  568999999


Q ss_pred             CCeEEEEeCCCC-c-eeeEEecccccceeEEEEECCC---C-----------CEEEEeeCCCeEEEEEccCCeeEEEEec
Q 040370           86 DGAIRLWDGVSA-N-CVRSIVGAHGTAEATSANFTKD---Q-----------RFVLSCGKDSTVKLWEVSSGRLVKQYLG  149 (228)
Q Consensus        86 dg~v~iwd~~~~-~-~~~~~~~~~~~~~i~~~~~~~~---~-----------~~l~~~~~d~~i~~wd~~~~~~~~~~~~  149 (228)
                      ||.|.|.+.++. . ....+...| ...+++++|.|.   |           +.|++|+.|..|+||+..+++-...-..
T Consensus       125 DG~vsvl~~~~~g~w~t~ki~~aH-~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l  203 (299)
T KOG1332|consen  125 DGKVSVLTYDSSGGWTTSKIVFAH-EIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTL  203 (299)
T ss_pred             CCcEEEEEEcCCCCccchhhhhcc-ccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhh
Confidence            999999988754 2 223333333 778999999985   4           5699999999999999988654332223


Q ss_pred             ceeeeeeeEEEECCCC---cEEEEeeCCCCeEEEEEcCCc--ceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEe
Q 040370          150 ATHTQLRFQAVFNDTE---EFVLSIDEPSNEIVIWDALTA--EKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFW  224 (228)
Q Consensus       150 ~~~~~~~~~~~~~~~~---~~~~~~~~~d~~i~i~d~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vw  224 (228)
                      ..|...+..++|.|.-   +..++++++||++.||-.+..  +-..++.......+..+.||+.|+.|+.++.|+.|.+|
T Consensus       204 ~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlw  283 (299)
T KOG1332|consen  204 EGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLW  283 (299)
T ss_pred             hhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEE
Confidence            3488899999999864   456667788999999986632  22233334567789999999999999999999999999


Q ss_pred             eec
Q 040370          225 KEI  227 (228)
Q Consensus       225 d~~  227 (228)
                      ...
T Consensus       284 ke~  286 (299)
T KOG1332|consen  284 KEN  286 (299)
T ss_pred             EeC
Confidence            854

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=1.6e-27  Score=163.99  Aligned_cols=206  Identities=14%  Similarity=0.279  Sum_probs=156.5

Q ss_pred             EeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccc-eeeeccceeeEEeCCCCCeEE-EEecCCeEEEE
Q 040370           15 VIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVP-EISVNGAINQVRYSSTGGMYV-TASKDGAIRLW   92 (228)
Q Consensus        15 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~-~~~~dg~v~iw   92 (228)
                      +.+|...|++++|+.||++|++++.|+.|++|++++.+........ ... -+..+.+.|.||.+-++ ++-...++++|
T Consensus        82 LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve-~dhpT~V~FapDc~s~vv~~~~g~~l~vy  160 (420)
T KOG2096|consen   82 LKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVE-YDHPTRVVFAPDCKSVVVSVKRGNKLCVY  160 (420)
T ss_pred             hhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhcccc-CCCceEEEECCCcceEEEEEccCCEEEEE
Confidence            4489999999999999999999999999999999875432111110 001 23468899999977544 55556689999


Q ss_pred             eCCCCc---eee--------EEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEE
Q 040370           93 DGVSAN---CVR--------SIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVF  161 (228)
Q Consensus        93 d~~~~~---~~~--------~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~  161 (228)
                      .+...+   ...        .+... +...+..+-...++.+|++++.|..|.+||++ |+.+..+..  .......++.
T Consensus       161 k~~K~~dG~~~~~~v~~D~~~f~~k-h~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idt--nq~~n~~aav  236 (420)
T KOG2096|consen  161 KLVKKTDGSGSHHFVHIDNLEFERK-HQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDT--NQSSNYDAAV  236 (420)
T ss_pred             EeeecccCCCCcccccccccccchh-cccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeecc--ccccccceee
Confidence            764322   111        11111 25667777777789999999999999999998 888888765  4445677889


Q ss_pred             CCCCcEEEEeeCCCCeEEEEEcC---Cc-----ceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370          162 NDTEEFVLSIDEPSNEIVIWDAL---TA-----EKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEI  227 (228)
Q Consensus       162 ~~~~~~~~~~~~~d~~i~i~d~~---~~-----~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~  227 (228)
                      +|+|+++++++.. ..+++|..-   .|     ..+..+ .+|.+.|.+++|+++...++|.+.||.+++||+.
T Consensus       237 SP~GRFia~~gFT-pDVkVwE~~f~kdG~fqev~rvf~L-kGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtd  308 (420)
T KOG2096|consen  237 SPDGRFIAVSGFT-PDVKVWEPIFTKDGTFQEVKRVFSL-KGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTD  308 (420)
T ss_pred             CCCCcEEEEecCC-CCceEEEEEeccCcchhhhhhhhee-ccchhheeeeeeCCCcceeEEEecCCcEEEeecc
Confidence            9999999999884 889999863   22     123344 7999999999999999999999999999999974

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=1.1e-28  Score=186.45  Aligned_cols=202  Identities=16%  Similarity=0.280  Sum_probs=160.9

Q ss_pred             ceEEEEEeC-CCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCC-CCCeEEEEecCCeEEEEeCCCCc
Q 040370           21 NVRSVSFHP-SGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSS-TGGMYVTASKDGAIRLWDGVSAN   98 (228)
Q Consensus        21 ~v~~~~~~~-~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~v~iwd~~~~~   98 (228)
                      .+..+.|+. +.++||+++..|.|.+||+..............| ...++++.|++ ..++|++|+.||+|++||++..+
T Consensus        89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH-~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~  167 (839)
T KOG0269|consen   89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEH-ERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKK  167 (839)
T ss_pred             ehhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhh-ccceeeeeeccCCccEEEecCCCceEEEEeeeccc
Confidence            455677876 6789999999999999999873222222233334 88999999998 46789999999999999999988


Q ss_pred             eeeEEecccccceeEEEEECC-CCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCCe
Q 040370           99 CVRSIVGAHGTAEATSANFTK-DQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNE  177 (228)
Q Consensus        99 ~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  177 (228)
                      ....+...  ...|..+.|+| .+.+++++...|.+.+||+|...... ++...|.+++.++.|+|++.+++++| .|+.
T Consensus       168 S~~t~~~n--SESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~-~k~~AH~GpV~c~nwhPnr~~lATGG-RDK~  243 (839)
T KOG0269|consen  168 SKSTFRSN--SESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCE-KKLTAHNGPVLCLNWHPNREWLATGG-RDKM  243 (839)
T ss_pred             cccccccc--chhhhceeeccCCCceEEEecCCceEEEeeccCchhHH-HHhhcccCceEEEeecCCCceeeecC-CCcc
Confidence            88887774  77899999999 77899999999999999999764322 22234899999999999888888766 6999


Q ss_pred             EEEEEcCCcceeEEeecCCCCCcEEEEeCCCCc-EEEEec--CCCCEEEeeec
Q 040370          178 IVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEA-AFITCG--TDRSVRFWKEI  227 (228)
Q Consensus       178 i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~--~dg~i~vwd~~  227 (228)
                      |+|||+.+++...........+|.++.|-|..+ .|++++  .|-.|+|||++
T Consensus       244 vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvr  296 (839)
T KOG0269|consen  244 VKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVR  296 (839)
T ss_pred             EEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeec
Confidence            999999876654444335567999999999655 567766  48889999986

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.96  E-value=3.9e-28  Score=171.68  Aligned_cols=214  Identities=15%  Similarity=0.232  Sum_probs=176.4

Q ss_pred             CCcCCccccceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeE
Q 040370            1 FFDFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMY   80 (228)
Q Consensus         1 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l   80 (228)
                      +|+.........-.+.+..++|++++|.+++.++++++.|+.+++|++...+....+.   +| ...|+++.|......+
T Consensus       201 ~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLs---GH-tdkVt~ak~~~~~~~v  276 (459)
T KOG0288|consen  201 LWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLS---GH-TDKVTAAKFKLSHSRV  276 (459)
T ss_pred             hhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhc---cc-ccceeeehhhccccce
Confidence            3665544444445555778899999999999999999999999999999887665554   33 8999999998876669


Q ss_pred             EEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEE
Q 040370           81 VTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAV  160 (228)
Q Consensus        81 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~  160 (228)
                      ++|+.|.+|++||+.+..+.+++..   ...+..+..+  ...+++|-.|++|++||.++..+......   .+.+.++.
T Consensus       277 Vsgs~DRtiK~WDl~k~~C~kt~l~---~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~---gg~vtSl~  348 (459)
T KOG0288|consen  277 VSGSADRTIKLWDLQKAYCSKTVLP---GSQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRSVPL---GGRVTSLD  348 (459)
T ss_pred             eeccccchhhhhhhhhhheeccccc---cccccceEec--ceeeeecccccceEEEeccCCceeeEeec---CcceeeEe
Confidence            9999999999999999888877665   4456666655  55688999999999999999998888875   34789999


Q ss_pred             ECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeec---CCCCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370          161 FNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSS---NHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEI  227 (228)
Q Consensus       161 ~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~  227 (228)
                      .++++..++++ +.|.++.+.|+++.+....+..   .-....+.+.|||++.|+++||.||.|+||++.
T Consensus       349 ls~~g~~lLss-sRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~  417 (459)
T KOG0288|consen  349 LSMDGLELLSS-SRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVF  417 (459)
T ss_pred             eccCCeEEeee-cCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEcc
Confidence            99999999997 5589999999999887776632   122348889999999999999999999999974

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=6.2e-28  Score=179.43  Aligned_cols=210  Identities=16%  Similarity=0.240  Sum_probs=178.2

Q ss_pred             eEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEe-CCCCCeEEEEecCCeEE
Q 040370           12 AFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRY-SSTGGMYVTASKDGAIR   90 (228)
Q Consensus        12 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~l~~~~~dg~v~   90 (228)
                      ..++..|...|+.++...+++.|++++.|-+|++|+...+. .........| ...|.|+++ -++...+++|+-|+.|.
T Consensus        66 ~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~-~~c~stir~H-~DYVkcla~~ak~~~lvaSgGLD~~If  143 (735)
T KOG0308|consen   66 IASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDN-TFCMSTIRTH-KDYVKCLAYIAKNNELVASGGLDRKIF  143 (735)
T ss_pred             hhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCc-chhHhhhhcc-cchheeeeecccCceeEEecCCCccEE
Confidence            44556799999999999999999999999999999998874 1122222233 899999999 77888999999999999


Q ss_pred             EEeCCCCc--eeeEEe-------cccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEE
Q 040370           91 LWDGVSAN--CVRSIV-------GAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVF  161 (228)
Q Consensus        91 iwd~~~~~--~~~~~~-------~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~  161 (228)
                      +||++++.  .+..+.       ......+|++++.++.+..+++|+..+.+++||.++.+.+..+.+  |...+..+..
T Consensus       144 lWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrG--HTdNVr~ll~  221 (735)
T KOG0308|consen  144 LWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRG--HTDNVRVLLV  221 (735)
T ss_pred             EEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeeec--cccceEEEEE
Confidence            99999772  222211       112367899999999999999999999999999999999999987  7778889999


Q ss_pred             CCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370          162 NDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEI  227 (228)
Q Consensus       162 ~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~  227 (228)
                      +++|..++++++ ||+|++||+...+++.++ ..|...|.++..+|+-..+++|+.||.|..=|++
T Consensus       222 ~dDGt~~ls~sS-DgtIrlWdLgqQrCl~T~-~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~  285 (735)
T KOG0308|consen  222 NDDGTRLLSASS-DGTIRLWDLGQQRCLATY-IVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLR  285 (735)
T ss_pred             cCCCCeEeecCC-CceEEeeeccccceeeeE-EeccCceEEEeeCCCcceEEecCCCCcEEecccC
Confidence            999999999877 899999999999999998 6899999999999999999999999999876653

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=2.1e-28  Score=162.37  Aligned_cols=209  Identities=14%  Similarity=0.178  Sum_probs=163.5

Q ss_pred             ecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCC--CCCeEEEEecCCeEEEEeC
Q 040370           17 QDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSS--TGGMYVTASKDGAIRLWDG   94 (228)
Q Consensus        17 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~~dg~v~iwd~   94 (228)
                      +|.+.|..+...--|++||+++.|++|+|+..++......+....+| .++|..++|..  .|.+|++++.||.|.||.-
T Consensus         9 ~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh-~GPVwqv~wahPk~G~iLAScsYDgkVIiWke   87 (299)
T KOG1332|consen    9 QHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGH-SGPVWKVAWAHPKFGTILASCSYDGKVIIWKE   87 (299)
T ss_pred             hhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCC-CCCeeEEeecccccCcEeeEeecCceEEEEec
Confidence            68888888888778999999999999999999887654444455556 99999999964  7999999999999999998


Q ss_pred             CCCceeeEEecccccceeEEEEECCC--CCEEEEeeCCCeEEEEEccCC-eeEEEEecceeeeeeeEEEECCC---C---
Q 040370           95 VSANCVRSIVGAHGTAEATSANFTKD--QRFVLSCGKDSTVKLWEVSSG-RLVKQYLGATHTQLRFQAVFNDT---E---  165 (228)
Q Consensus        95 ~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~d~~i~~wd~~~~-~~~~~~~~~~~~~~~~~~~~~~~---~---  165 (228)
                      ++++-.+......+...|++++|.|.  |-.|++++.||.|.+.+.++. ..........|...+.+++|.|.   |   
T Consensus        88 ~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~  167 (299)
T KOG1332|consen   88 ENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLV  167 (299)
T ss_pred             CCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCcccc
Confidence            88754443333334889999999994  568999999999999998764 33333333447778888888876   3   


Q ss_pred             -------cEEEEeeCCCCeEEEEEcCCcceeE-EeecCCCCCcEEEEeCCCC----cEEEEecCCCCEEEeee
Q 040370          166 -------EFVLSIDEPSNEIVIWDALTAEKVA-KWSSNHIGAPRWIEHSPAE----AAFITCGTDRSVRFWKE  226 (228)
Q Consensus       166 -------~~~~~~~~~d~~i~i~d~~~~~~~~-~~~~~~~~~v~~~~~~~~~----~~l~s~~~dg~i~vwd~  226 (228)
                             .+-+++++.|+.|+||+..+++-.. ....+|.+-|+.++|.|.-    .+|++++.||+|.||-.
T Consensus       168 ~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~  240 (299)
T KOG1332|consen  168 DQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTK  240 (299)
T ss_pred             ccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEe
Confidence                   1224445558999999988764222 2247999999999999953    58999999999999964

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.96  E-value=6.5e-28  Score=174.98  Aligned_cols=220  Identities=20%  Similarity=0.320  Sum_probs=183.1

Q ss_pred             CCcCCccccceeE---EEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCC
Q 040370            1 FFDFSKATAKRAF---RVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTG   77 (228)
Q Consensus         1 iwd~~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~   77 (228)
                      |||+..+..+...   ........|+++...|||+.|++|+.-.++.|||+..............  .-...+++.+||.
T Consensus       444 VWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikaeltss--apaCyALa~spDa  521 (705)
T KOG0639|consen  444 VWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSS--APACYALAISPDA  521 (705)
T ss_pred             EeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCc--chhhhhhhcCCcc
Confidence            6888876544433   2334567899999999999999999999999999987664433333211  3457789999999


Q ss_pred             CeEEEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEE-----------
Q 040370           78 GMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQ-----------  146 (228)
Q Consensus        78 ~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~-----------  146 (228)
                      +..++|..||.|.|||+.+...++.+++|  ...+.||..+++|..|.+|+-|.+||-||+++++.+..           
T Consensus       522 kvcFsccsdGnI~vwDLhnq~~VrqfqGh--tDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhdF~SQIfSLg  599 (705)
T KOG0639|consen  522 KVCFSCCSDGNIAVWDLHNQTLVRQFQGH--TDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDFSSQIFSLG  599 (705)
T ss_pred             ceeeeeccCCcEEEEEcccceeeecccCC--CCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhhhhhhheecc
Confidence            99999999999999999999999999998  77889999999999999999999999999987653321           


Q ss_pred             ---------------------------EecceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCC
Q 040370          147 ---------------------------YLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGA  199 (228)
Q Consensus       147 ---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~  199 (228)
                                                 +..+.|...+.++.|.+.|++++++|. |+-+..|...-|..+...  ...++
T Consensus       600 ~cP~~dWlavGMens~vevlh~skp~kyqlhlheScVLSlKFa~cGkwfvStGk-DnlLnawrtPyGasiFqs--kE~Ss  676 (705)
T KOG0639|consen  600 YCPTGDWLAVGMENSNVEVLHTSKPEKYQLHLHESCVLSLKFAYCGKWFVSTGK-DNLLNAWRTPYGASIFQS--KESSS  676 (705)
T ss_pred             cCCCccceeeecccCcEEEEecCCccceeecccccEEEEEEecccCceeeecCc-hhhhhhccCccccceeec--cccCc
Confidence                                       223446788899999999999999887 799999999888888776  45789


Q ss_pred             cEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370          200 PRWIEHSPAEAAFITCGTDRSVRFWKEI  227 (228)
Q Consensus       200 v~~~~~~~~~~~l~s~~~dg~i~vwd~~  227 (228)
                      |.++.++.|.++++||+.|....||.+.
T Consensus       677 VlsCDIS~ddkyIVTGSGdkkATVYeV~  704 (705)
T KOG0639|consen  677 VLSCDISFDDKYIVTGSGDKKATVYEVI  704 (705)
T ss_pred             ceeeeeccCceEEEecCCCcceEEEEEe
Confidence            9999999999999999999999999874

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.96  E-value=7.5e-29  Score=186.26  Aligned_cols=197  Identities=20%  Similarity=0.342  Sum_probs=171.4

Q ss_pred             eEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEE
Q 040370           12 AFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRL   91 (228)
Q Consensus        12 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i   91 (228)
                      ...+.+|..+|.++.|+++..+|++|+.+|+|++||++..+.+..+.   +| ...+.++.|+|-+.++++|+.|+.+++
T Consensus        63 i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLt---gh-~~~~~sv~f~P~~~~~a~gStdtd~~i  138 (825)
T KOG0267|consen   63 ITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLT---GH-LLNITSVDFHPYGEFFASGSTDTDLKI  138 (825)
T ss_pred             hheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhh---cc-ccCcceeeeccceEEecccccccccee
Confidence            34567899999999999999999999999999999999887665443   33 788999999999999999999999999


Q ss_pred             EeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEe
Q 040370           92 WDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSI  171 (228)
Q Consensus        92 wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (228)
                      ||.+...+...+..|  ...+..+.|+|+|++++.++.|.++++||+..|+....|..  |...+..+.|+|..- +++.
T Consensus       139 wD~Rk~Gc~~~~~s~--~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~--~e~~v~sle~hp~e~-Lla~  213 (825)
T KOG0267|consen  139 WDIRKKGCSHTYKSH--TRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKS--HEGKVQSLEFHPLEV-LLAP  213 (825)
T ss_pred             hhhhccCceeeecCC--cceeEEEeecCCCceeeccCCcceeeeeccccccccccccc--ccccccccccCchhh-hhcc
Confidence            999988888888874  77899999999999999999999999999999999999987  666777777877654 4555


Q ss_pred             eCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCC
Q 040370          172 DEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTD  218 (228)
Q Consensus       172 ~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d  218 (228)
                      |+.|+++++||+++.+.+... ......|.+.+|+|++..+++|..+
T Consensus       214 Gs~d~tv~f~dletfe~I~s~-~~~~~~v~~~~fn~~~~~~~~G~q~  259 (825)
T KOG0267|consen  214 GSSDRTVRFWDLETFEVISSG-KPETDGVRSLAFNPDGKIVLSGEQI  259 (825)
T ss_pred             CCCCceeeeeccceeEEeecc-CCccCCceeeeecCCceeeecCchh
Confidence            666999999999998888877 4557899999999999988887654

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=1.1e-27  Score=164.99  Aligned_cols=206  Identities=16%  Similarity=0.307  Sum_probs=170.6

Q ss_pred             eEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEE
Q 040370           12 AFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRL   91 (228)
Q Consensus        12 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i   91 (228)
                      ...+.+|.+.|..++.......+.+++.|.+.+||.++++.++..+..+    .+.|++++|++.+.++++++.|++-.|
T Consensus       141 vre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH----~GSVNsikfh~s~~L~lTaSGD~taHI  216 (481)
T KOG0300|consen  141 VRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGH----TGSVNSIKFHNSGLLLLTASGDETAHI  216 (481)
T ss_pred             hhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeeccc----ccceeeEEeccccceEEEccCCcchHH
Confidence            3345689999999999887778899999999999999999998877643    889999999999999999999999999


Q ss_pred             Ee------CCCC----------------------------------ceeeEEecccccceeEEEEECCCCCEEEEeeCCC
Q 040370           92 WD------GVSA----------------------------------NCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDS  131 (228)
Q Consensus        92 wd------~~~~----------------------------------~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~  131 (228)
                      |.      +...                                  .++..+.+|  ...|.+..|-..++.+++++.|.
T Consensus       217 W~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH--~~vV~a~dWL~gg~Q~vTaSWDR  294 (481)
T KOG0300|consen  217 WKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGH--RAVVSACDWLAGGQQMVTASWDR  294 (481)
T ss_pred             HHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeecc--ccceEehhhhcCcceeeeeeccc
Confidence            96      1110                                  012233333  67788888999999999999999


Q ss_pred             eEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcE
Q 040370          132 TVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAA  211 (228)
Q Consensus       132 ~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  211 (228)
                      +..+||+++++.+..+.+  |......++-+|..+.+++++ .|-+.++||.+..-.......+|...|+++.|..+. .
T Consensus       295 TAnlwDVEtge~v~~LtG--Hd~ELtHcstHptQrLVvTsS-rDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd-~  370 (481)
T KOG0300|consen  295 TANLWDVETGEVVNILTG--HDSELTHCSTHPTQRLVVTSS-RDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDD-R  370 (481)
T ss_pred             cceeeeeccCceeccccC--cchhccccccCCcceEEEEec-cCceeEeccchhhcceeeeecccccceeEEEEecCC-c
Confidence            999999999999999988  555566777788888777754 589999999996555444458999999999998755 5


Q ss_pred             EEEecCCCCEEEeeec
Q 040370          212 FITCGTDRSVRFWKEI  227 (228)
Q Consensus       212 l~s~~~dg~i~vwd~~  227 (228)
                      +++|+.|.+|++||++
T Consensus       371 vVSgSDDrTvKvWdLr  386 (481)
T KOG0300|consen  371 VVSGSDDRTVKVWDLR  386 (481)
T ss_pred             eeecCCCceEEEeeec
Confidence            8999999999999985

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.96  E-value=3.8e-27  Score=165.12  Aligned_cols=212  Identities=17%  Similarity=0.308  Sum_probs=158.4

Q ss_pred             eEEEeecCcceEEEEEeCCC--CEEEEecCCCeEEEEEcccceE-------------EeeeccceeeeccceeeEEeCCC
Q 040370           12 AFRVIQDTHNVRSVSFHPSG--DFLLAGTDHPIAHLYDVNTFQC-------------YLSANVPEISVNGAINQVRYSST   76 (228)
Q Consensus        12 ~~~~~~~~~~v~~~~~~~~~--~~l~~~~~d~~i~vw~~~~~~~-------------~~~~~~~~~~~~~~i~~~~~~~~   76 (228)
                      ..+...|.+.++-+.-++-+  .+.++=+..|.|+||++...-.             ...+....+| ...=..++|||-
T Consensus       144 ~~~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~gh-k~EGy~LdWSp~  222 (440)
T KOG0302|consen  144 EMKSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGH-KGEGYGLDWSPI  222 (440)
T ss_pred             cccccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEeccc-Cccceeeecccc
Confidence            34455788888888887754  4555667889999999854210             0011111223 556688999993


Q ss_pred             -CCeEEEEecCCeEEEEeCCCCcee---eEEecccccceeEEEEECC-CCCEEEEeeCCCeEEEEEccCCeeEEEEecce
Q 040370           77 -GGMYVTASKDGAIRLWDGVSANCV---RSIVGAHGTAEATSANFTK-DQRFVLSCGKDSTVKLWEVSSGRLVKQYLGAT  151 (228)
Q Consensus        77 -~~~l~~~~~dg~v~iwd~~~~~~~---~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~  151 (228)
                       ...+++|..-+.|++|...++.-.   ..+..|  ...|-.++|+| ....|++|+.||+|+|||+|.+.....+....
T Consensus       223 ~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH--~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kA  300 (440)
T KOG0302|consen  223 KTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGH--TKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKA  300 (440)
T ss_pred             cccccccCccccceEeeeeccCceeecCcccccc--ccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeec
Confidence             235889988899999998887532   233343  78899999999 45689999999999999999984433333344


Q ss_pred             eeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCC---cceeEEeecCCCCCcEEEEeCC-CCcEEEEecCCCCEEEeeec
Q 040370          152 HTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALT---AEKVAKWSSNHIGAPRWIEHSP-AEAAFITCGTDRSVRFWKEI  227 (228)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~---~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~vwd~~  227 (228)
                      |..-+..+.|+.... ++++|++||+++|||+|+   ++++..+ ..|..+|+++.|+| +...|+++|.|..|.+||+.
T Consensus       301 h~sDVNVISWnr~~~-lLasG~DdGt~~iwDLR~~~~~~pVA~f-k~Hk~pItsieW~p~e~s~iaasg~D~QitiWDls  378 (440)
T KOG0302|consen  301 HNSDVNVISWNRREP-LLASGGDDGTLSIWDLRQFKSGQPVATF-KYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLS  378 (440)
T ss_pred             cCCceeeEEccCCcc-eeeecCCCceEEEEEhhhccCCCcceeE-EeccCCeeEEEeccccCceEEeccCCCcEEEEEee
Confidence            777889999999888 556677799999999986   4556666 78999999999999 45678889999999999986


Q ss_pred             C
Q 040370          228 L  228 (228)
Q Consensus       228 l  228 (228)
                      +
T Consensus       379 v  379 (440)
T KOG0302|consen  379 V  379 (440)
T ss_pred             c
Confidence            3

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.96  E-value=1.4e-26  Score=180.75  Aligned_cols=203  Identities=17%  Similarity=0.310  Sum_probs=162.3

Q ss_pred             CcceEEEEEeCCCCEEEEec--CCCeEEEEEcccce--------EEeeeccceeeeccceeeEEeCCCCCeEEEEecCCe
Q 040370           19 THNVRSVSFHPSGDFLLAGT--DHPIAHLYDVNTFQ--------CYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGA   88 (228)
Q Consensus        19 ~~~v~~~~~~~~~~~l~~~~--~d~~i~vw~~~~~~--------~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~   88 (228)
                      ...|.+++.+|++..+|+|+  .|+.++||+.+.--        .+.........|.+.|+|+.|+|||++||+|++|+.
T Consensus        13 ~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~   92 (942)
T KOG0973|consen   13 EKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRL   92 (942)
T ss_pred             CeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcce
Confidence            45799999999999999999  89999999875321        111111112234899999999999999999999999


Q ss_pred             EEEEeCCC------------------CceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecc
Q 040370           89 IRLWDGVS------------------ANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGA  150 (228)
Q Consensus        89 v~iwd~~~------------------~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~  150 (228)
                      |.||....                  .+....+.+|  ...|..++|+|++.+|++++.|++|.+|+.++.+.+..+.+ 
T Consensus        93 v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H--~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~-  169 (942)
T KOG0973|consen   93 VMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGH--DSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRG-  169 (942)
T ss_pred             EEEeeecccCCcccccccccccccceeeEEEEEecC--CCccceeccCCCccEEEEecccceEEEEccccceeeeeeec-
Confidence            99998662                  1234455554  88999999999999999999999999999999999999988 


Q ss_pred             eeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEE---------------------------------------
Q 040370          151 THTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAK---------------------------------------  191 (228)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~---------------------------------------  191 (228)
                       |...+..+.|.|-|+|+++-+. |++|++|+..+-.....                                       
T Consensus       170 -H~s~VKGvs~DP~Gky~ASqsd-Drtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~  247 (942)
T KOG0973|consen  170 -HQSLVKGVSWDPIGKYFASQSD-DRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTI  247 (942)
T ss_pred             -ccccccceEECCccCeeeeecC-CceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCccee
Confidence             7788999999999999999766 89999998533111100                                       


Q ss_pred             ------------eecCCCCCcEEEEeCC-----CCc------------EEEEecCCCCEEEeee
Q 040370          192 ------------WSSNHIGAPRWIEHSP-----AEA------------AFITCGTDRSVRFWKE  226 (228)
Q Consensus       192 ------------~~~~~~~~v~~~~~~~-----~~~------------~l~s~~~dg~i~vwd~  226 (228)
                                  ...+|..++.++.|+|     ..+            .+|+||.|++|.||..
T Consensus       248 ~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T  311 (942)
T KOG0973|consen  248 AIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNT  311 (942)
T ss_pred             EEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEec
Confidence                        0247999999999987     112            6789999999999985

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.95  E-value=5.6e-27  Score=167.84  Aligned_cols=207  Identities=16%  Similarity=0.251  Sum_probs=169.6

Q ss_pred             EEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEe----e----------eccceeeeccceeeEEeCCCCC
Q 040370           13 FRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYL----S----------ANVPEISVNGAINQVRYSSTGG   78 (228)
Q Consensus        13 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~----~----------~~~~~~~~~~~i~~~~~~~~~~   78 (228)
                      .....|..+|.+++++|+.++.++++.+++|.-|+..+++...    .          ...+...|...+.+++.+||++
T Consensus       136 ~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgk  215 (479)
T KOG0299|consen  136 RVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGK  215 (479)
T ss_pred             eeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCc
Confidence            3445799999999999999999999999999999998876331    1          1111113377899999999999


Q ss_pred             eEEEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeE
Q 040370           79 MYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQ  158 (228)
Q Consensus        79 ~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~  158 (228)
                      +|++|+.|..|.||+.++.+.++.+..|  ...|.+++|-.....+++++.|+.|++|++.....+.++.+  |...+..
T Consensus       216 ylatgg~d~~v~Iw~~~t~ehv~~~~gh--r~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyG--Hqd~v~~  291 (479)
T KOG0299|consen  216 YLATGGRDRHVQIWDCDTLEHVKVFKGH--RGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYG--HQDGVLG  291 (479)
T ss_pred             EEEecCCCceEEEecCcccchhhccccc--ccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhC--Cccceee
Confidence            9999999999999999999999998887  88999999999888999999999999999998888888877  5566666


Q ss_pred             EEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370          159 AVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEI  227 (228)
Q Consensus       159 ~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~  227 (228)
                      +....-+ .+++.|+.|+++++|++.....+  +..+|.+.+-|++|-. ...+++||.||.|.+|++.
T Consensus       292 IdaL~re-R~vtVGgrDrT~rlwKi~eesql--ifrg~~~sidcv~~In-~~HfvsGSdnG~IaLWs~~  356 (479)
T KOG0299|consen  292 IDALSRE-RCVTVGGRDRTVRLWKIPEESQL--IFRGGEGSIDCVAFIN-DEHFVSGSDNGSIALWSLL  356 (479)
T ss_pred             echhccc-ceEEeccccceeEEEecccccee--eeeCCCCCeeeEEEec-ccceeeccCCceEEEeeec
Confidence            6554444 45556666999999999443333  3368899999999964 5579999999999999863

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.95  E-value=1.2e-27  Score=166.99  Aligned_cols=215  Identities=12%  Similarity=0.163  Sum_probs=167.2

Q ss_pred             CCcCCccccceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccc---------------------------eE
Q 040370            1 FFDFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTF---------------------------QC   53 (228)
Q Consensus         1 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~---------------------------~~   53 (228)
                      |||+....  ....+..|.+.|+.|++..  ..++++++|.+|+.|.++..                           +.
T Consensus        93 iWnlsqR~--~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~~p~~tilg~s~~~gIdh~~~~~~FaTcGe~  168 (433)
T KOG0268|consen   93 IWNLSQRE--CIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDGPPLHTILGKSVYLGIDHHRKNSVFATCGEQ  168 (433)
T ss_pred             EEehhhhh--hhheeecccCceeeEEecc--cceEEecCCcceeeeeccCCcceeeeccccccccccccccccccccCce
Confidence            57777443  3445557999999999975  67888888999999974321                           10


Q ss_pred             Eeeec--------cceeeeccceeeEEeCCC-CCeEEEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEE
Q 040370           54 YLSAN--------VPEISVNGAINQVRYSST-GGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFV  124 (228)
Q Consensus        54 ~~~~~--------~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l  124 (228)
                      +....        ..... ...|.++.|+|- ...|++|+.|+.|.+||++++.+++.+..   ...-+.++|+|.+-.+
T Consensus       169 i~IWD~~R~~Pv~smswG-~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~---~mRTN~IswnPeafnF  244 (433)
T KOG0268|consen  169 IDIWDEQRDNPVSSMSWG-ADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVIL---TMRTNTICWNPEAFNF  244 (433)
T ss_pred             eeecccccCCccceeecC-CCceeEEecCCCcchheeeeccCCceEEEecccCCccceeee---eccccceecCccccce
Confidence            00000        00011 346788999995 45777888999999999999999888776   4566889999988889


Q ss_pred             EEeeCCCeEEEEEccCCe-eEEEEecceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEE
Q 040370          125 LSCGKDSTVKLWEVSSGR-LVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWI  203 (228)
Q Consensus       125 ~~~~~d~~i~~wd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~  203 (228)
                      ++|++|..++.||++..+ ++....+  |...+..+.|+|.|..+++++. |.+|+||..+.+.........-...|.++
T Consensus       245 ~~a~ED~nlY~~DmR~l~~p~~v~~d--hvsAV~dVdfsptG~Efvsgsy-DksIRIf~~~~~~SRdiYhtkRMq~V~~V  321 (433)
T KOG0268|consen  245 VAANEDHNLYTYDMRNLSRPLNVHKD--HVSAVMDVDFSPTGQEFVSGSY-DKSIRIFPVNHGHSRDIYHTKRMQHVFCV  321 (433)
T ss_pred             eeccccccceehhhhhhcccchhhcc--cceeEEEeccCCCcchhccccc-cceEEEeecCCCcchhhhhHhhhheeeEE
Confidence            999999999999999754 4455555  7889999999999999988666 89999999988776555533445679999


Q ss_pred             EeCCCCcEEEEecCCCCEEEeee
Q 040370          204 EHSPAEAAFITCGTDRSVRFWKE  226 (228)
Q Consensus       204 ~~~~~~~~l~s~~~dg~i~vwd~  226 (228)
                      .|+-|.+++++||.|+.|++|..
T Consensus       322 k~S~Dskyi~SGSdd~nvRlWka  344 (433)
T KOG0268|consen  322 KYSMDSKYIISGSDDGNVRLWKA  344 (433)
T ss_pred             EEeccccEEEecCCCcceeeeec
Confidence            99999999999999999999974

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.95  E-value=2.6e-27  Score=178.46  Aligned_cols=205  Identities=18%  Similarity=0.316  Sum_probs=172.7

Q ss_pred             ecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCC---CCCeEEEEecCCeEEEEe
Q 040370           17 QDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSS---TGGMYVTASKDGAIRLWD   93 (228)
Q Consensus        17 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~~~l~~~~~dg~v~iwd   93 (228)
                      +....+++++.+|++++||+|..-|.++||++.+.+......    .|...|.|+.|+.   ..++|++++.|..|+|+|
T Consensus       457 d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~e----AHesEilcLeyS~p~~~~kLLASasrdRlIHV~D  532 (1080)
T KOG1408|consen  457 DSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFME----AHESEILCLEYSFPVLTNKLLASASRDRLIHVYD  532 (1080)
T ss_pred             CcccceEEEEECCCcceecccCccCceEEEEehhhhhhhhee----cccceeEEEeecCchhhhHhhhhccCCceEEEEe
Confidence            456689999999999999999999999999999866544333    2388999999985   356899999999999999


Q ss_pred             CCCC-ceeeEEecc--------------------------------------------c---ccceeEEEEECCCCCEEE
Q 040370           94 GVSA-NCVRSIVGA--------------------------------------------H---GTAEATSANFTKDQRFVL  125 (228)
Q Consensus        94 ~~~~-~~~~~~~~~--------------------------------------------~---~~~~i~~~~~~~~~~~l~  125 (228)
                      +... .+++++..|                                            +   ....++.++..|..++++
T Consensus       533 v~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~  612 (1080)
T KOG1408|consen  533 VKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVV  612 (1080)
T ss_pred             cccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEE
Confidence            6532 111111111                                            0   145678888899999999


Q ss_pred             EeeCCCeEEEEEccCCeeEEEEecce-eeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEE
Q 040370          126 SCGKDSTVKLWEVSSGRLVKQYLGAT-HTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIE  204 (228)
Q Consensus       126 ~~~~d~~i~~wd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~  204 (228)
                      +++.|+.|+|||+.+++..+.|++.. +......+...|.+.|++++++ |.++.++|..+++++.+. .+|...|+.+.
T Consensus       613 t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScs-dktl~~~Df~sgEcvA~m-~GHsE~VTG~k  690 (1080)
T KOG1408|consen  613 TVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCS-DKTLCFVDFVSGECVAQM-TGHSEAVTGVK  690 (1080)
T ss_pred             EEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeec-CCceEEEEeccchhhhhh-cCcchheeeee
Confidence            99999999999999999999998754 4467788999999999999988 799999999999999998 79999999999


Q ss_pred             eCCCCcEEEEecCCCCEEEeeec
Q 040370          205 HSPAEAAFITCGTDRSVRFWKEI  227 (228)
Q Consensus       205 ~~~~~~~l~s~~~dg~i~vwd~~  227 (228)
                      |.+|-+.|++.+.||.|.||.+.
T Consensus       691 F~nDCkHlISvsgDgCIFvW~lp  713 (1080)
T KOG1408|consen  691 FLNDCKHLISVSGDGCIFVWKLP  713 (1080)
T ss_pred             ecccchhheeecCCceEEEEECc
Confidence            99999999999999999999975

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.95  E-value=6.1e-26  Score=173.46  Aligned_cols=194  Identities=24%  Similarity=0.415  Sum_probs=168.7

Q ss_pred             cCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCCC
Q 040370           18 DTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSA   97 (228)
Q Consensus        18 ~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~   97 (228)
                      +...+.+..|.  ..++++++.+++|++|+..++..+...  ..+| .+.|.++++...+.++++|+.|.++++||..++
T Consensus       207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~--l~GH-~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg  281 (537)
T KOG0274|consen  207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTR--LVGH-FGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTG  281 (537)
T ss_pred             Ccchhhhheee--cCeEEecCCCceeEEeecccceEEEee--ccCC-CCCceeEEEecCCCEEEEEecCCcEEeEecCCC
Confidence            56788899887  678999999999999999998866541  2344 899999999877889999999999999999999


Q ss_pred             ceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCCe
Q 040370           98 NCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNE  177 (228)
Q Consensus        98 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  177 (228)
                      ++...+.+|  ...+.++...  ..++++|+.|.+|++|++.++..+..+.+  |...+.++..+  +.++++++. |+.
T Consensus       282 ~C~~~l~gh--~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~~l~l~~~--h~~~V~~v~~~--~~~lvsgs~-d~~  352 (537)
T KOG0274|consen  282 ECTHSLQGH--TSSVRCLTID--PFLLVSGSRDNTVKVWDVTNGACLNLLRG--HTGPVNCVQLD--EPLLVSGSY-DGT  352 (537)
T ss_pred             cEEEEecCC--CceEEEEEcc--CceEeeccCCceEEEEeccCcceEEEecc--ccccEEEEEec--CCEEEEEec-Cce
Confidence            999999987  6777777654  56788899999999999999999999987  78888888876  666776555 899


Q ss_pred             EEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370          178 IVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEI  227 (228)
Q Consensus       178 i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~  227 (228)
                      |++||..+++++..+ .+|...|.++.+.+. ..+++|+.|+.|++||+.
T Consensus       353 v~VW~~~~~~cl~sl-~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~  400 (537)
T KOG0274|consen  353 VKVWDPRTGKCLKSL-SGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLR  400 (537)
T ss_pred             EEEEEhhhceeeeee-cCCcceEEEEEecCc-ceEEeeeeccceEeecCC
Confidence            999999999999999 789999999988765 899999999999999975

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.95  E-value=1.1e-26  Score=166.41  Aligned_cols=199  Identities=18%  Similarity=0.296  Sum_probs=165.5

Q ss_pred             ecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCC
Q 040370           17 QDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVS   96 (228)
Q Consensus        17 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~   96 (228)
                      .|...+.+++.+||+++||+|+.|..|.||+.++.+.+..+.   +| .+.|.+++|-.....+++++.|+.|++|+++.
T Consensus       200 ~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~---gh-r~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~  275 (479)
T KOG0299|consen  200 GHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFK---GH-RGAVSSLAFRKGTSELYSASADRSVKVWSIDQ  275 (479)
T ss_pred             cccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhccc---cc-ccceeeeeeecCccceeeeecCCceEEEehhH
Confidence            799999999999999999999999999999999998776644   23 89999999988888899999999999999999


Q ss_pred             CceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCC
Q 040370           97 ANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSN  176 (228)
Q Consensus        97 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  176 (228)
                      ...+.++.+|  ...|.++....-++.+-+|+.|+++++|++... ....+.+  +...+-+++|-.+..+ ++ |++||
T Consensus       276 ~s~vetlyGH--qd~v~~IdaL~reR~vtVGgrDrT~rlwKi~ee-sqlifrg--~~~sidcv~~In~~Hf-vs-GSdnG  348 (479)
T KOG0299|consen  276 LSYVETLYGH--QDGVLGIDALSRERCVTVGGRDRTVRLWKIPEE-SQLIFRG--GEGSIDCVAFINDEHF-VS-GSDNG  348 (479)
T ss_pred             hHHHHHHhCC--ccceeeechhcccceEEeccccceeEEEecccc-ceeeeeC--CCCCeeeEEEecccce-ee-ccCCc
Confidence            9888888887  778889888777777777889999999999543 2333444  4556667777655443 44 56689


Q ss_pred             eEEEEEcCCcceeEEeecCCC-----------CCcEEEEeCCCCcEEEEecCCCCEEEeee
Q 040370          177 EIVIWDALTAEKVAKWSSNHI-----------GAPRWIEHSPAEAAFITCGTDRSVRFWKE  226 (228)
Q Consensus       177 ~i~i~d~~~~~~~~~~~~~~~-----------~~v~~~~~~~~~~~l~s~~~dg~i~vwd~  226 (228)
                      .|.+|++.+.+++.....+|.           ..|++++..|...++++|+.+|.|++|.+
T Consensus       349 ~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i  409 (479)
T KOG0299|consen  349 SIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKI  409 (479)
T ss_pred             eEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEe
Confidence            999999999998887754442           26889999999999999999999999986

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.95  E-value=1.2e-28  Score=185.17  Aligned_cols=204  Identities=22%  Similarity=0.400  Sum_probs=183.4

Q ss_pred             EEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEe
Q 040370           14 RVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWD   93 (228)
Q Consensus        14 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd   93 (228)
                      +...|...+.++..-..++.+++|+.|..+-+|.+.....+..+.   +| ..+|.++.|++...+|++|+.+|+|++||
T Consensus        23 ~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~---~h-espIeSl~f~~~E~LlaagsasgtiK~wD   98 (825)
T KOG0267|consen   23 EFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLT---GH-ESPIESLTFDTSERLLAAGSASGTIKVWD   98 (825)
T ss_pred             hhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheee---cc-CCcceeeecCcchhhhcccccCCceeeee
Confidence            344688889999887788999999999999999987766555432   33 89999999999999999999999999999


Q ss_pred             CCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeC
Q 040370           94 GVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDE  173 (228)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (228)
                      ++..+.++.+.+|  ...+.++.|+|-+.+.++|+.|..+++||.+...+...+.+  |...+..+.|+|+|++++.++.
T Consensus        99 leeAk~vrtLtgh--~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s--~~~vv~~l~lsP~Gr~v~~g~e  174 (825)
T KOG0267|consen   99 LEEAKIVRTLTGH--LLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKS--HTRVVDVLRLSPDGRWVASGGE  174 (825)
T ss_pred             hhhhhhhhhhhcc--ccCcceeeeccceEEeccccccccceehhhhccCceeeecC--CcceeEEEeecCCCceeeccCC
Confidence            9999999999887  77899999999999999999999999999998888888877  7778888999999999998766


Q ss_pred             CCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370          174 PSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEI  227 (228)
Q Consensus       174 ~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~  227 (228)
                       |..+++||...|+....+ ..|.+.+..+.|+|..-++++||.|+++++||+.
T Consensus       175 -d~tvki~d~~agk~~~ef-~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dle  226 (825)
T KOG0267|consen  175 -DNTVKIWDLTAGKLSKEF-KSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLE  226 (825)
T ss_pred             -cceeeeeccccccccccc-ccccccccccccCchhhhhccCCCCceeeeeccc
Confidence             899999999999999998 7899999999999999999999999999999975

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.95  E-value=7.5e-26  Score=154.73  Aligned_cols=201  Identities=15%  Similarity=0.136  Sum_probs=155.7

Q ss_pred             EEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEe
Q 040370           14 RVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWD   93 (228)
Q Consensus        14 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd   93 (228)
                      ....|..++.+++|.+ ...+++|+-||.|+.+|+.++.....     +.|..+|.|+.+++....+++|+.|++|++||
T Consensus        49 ~~~~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~~~i-----gth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD  122 (323)
T KOG1036|consen   49 LKFKHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNEDQI-----GTHDEGIRCIEYSYEVGCVISGSWDKTIKFWD  122 (323)
T ss_pred             hheecCCceeeeeccC-CceEEEeccCceEEEEEecCCcceee-----ccCCCceEEEEeeccCCeEEEcccCccEEEEe
Confidence            3456899999999986 56789999999999999998774332     23388999999999888999999999999999


Q ss_pred             CCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeC
Q 040370           94 GVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDE  173 (228)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (228)
                      .++......+..   ...|.++...  ++.|+.|+.|..+.+||+++.....+.....-...+.++++.|++.-.++++-
T Consensus       123 ~R~~~~~~~~d~---~kkVy~~~v~--g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSi  197 (323)
T KOG1036|consen  123 PRNKVVVGTFDQ---GKKVYCMDVS--GNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSI  197 (323)
T ss_pred             cccccccccccc---CceEEEEecc--CCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEee
Confidence            998555555544   4478887665  77899999999999999998776655444445566778888887666565444


Q ss_pred             CCCeEEEEEcCCc----ceeEEeecCC---------CCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370          174 PSNEIVIWDALTA----EKVAKWSSNH---------IGAPRWIEHSPAEAAFITCGTDRSVRFWKEI  227 (228)
Q Consensus       174 ~d~~i~i~d~~~~----~~~~~~~~~~---------~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~  227 (228)
                       ||.|.+=.+...    +....+ ..|         -.+|++++|+|-...|+|||.||.|.+||+.
T Consensus       198 -eGRVavE~~d~s~~~~skkyaF-kCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~  262 (323)
T KOG1036|consen  198 -EGRVAVEYFDDSEEAQSKKYAF-KCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLF  262 (323)
T ss_pred             -cceEEEEccCCchHHhhhceeE-EeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCc
Confidence             698887655444    222222 222         2379999999998999999999999999974

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.95  E-value=9.7e-27  Score=166.63  Aligned_cols=212  Identities=16%  Similarity=0.183  Sum_probs=164.5

Q ss_pred             eEEEeecCcceEEEEEeCCC--CEEEEecCCCeEEEEEcccceEE-eeeccceeeeccceeeEEeCC-CCCeEEEEecCC
Q 040370           12 AFRVIQDTHNVRSVSFHPSG--DFLLAGTDHPIAHLYDVNTFQCY-LSANVPEISVNGAINQVRYSS-TGGMYVTASKDG   87 (228)
Q Consensus        12 ~~~~~~~~~~v~~~~~~~~~--~~l~~~~~d~~i~vw~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg   87 (228)
                      .....-+..+|++++|+|..  +.+|+|..-|+|-+||+...+.. ........| ..+|.++.|+| +...+++.|.||
T Consensus       179 ~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~h-s~~Vs~l~F~P~n~s~i~ssSyDG  257 (498)
T KOG4328|consen  179 LNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPH-SGPVSGLKFSPANTSQIYSSSYDG  257 (498)
T ss_pred             cceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccC-CccccceEecCCChhheeeeccCc
Confidence            33444588999999999943  68889999999999999533221 112222233 88999999999 456899999999


Q ss_pred             eEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCee-EEEEecceeeeeeeEEEECCCCc
Q 040370           88 AIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRL-VKQYLGATHTQLRFQAVFNDTEE  166 (228)
Q Consensus        88 ~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  166 (228)
                      +|++-|++.+.....+..........++.|+.+...++.+..=|...+||++++.. ...+..  |...+..+.++|...
T Consensus       258 tiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~l--h~kKI~sv~~NP~~p  335 (498)
T KOG4328|consen  258 TIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRL--HKKKITSVALNPVCP  335 (498)
T ss_pred             eeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhh--hhcccceeecCCCCc
Confidence            99999998765433333322255678889998888888888888999999998665 334444  556899999999999


Q ss_pred             EEEEeeCCCCeEEEEEcCCcceeEE---eecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeee
Q 040370          167 FVLSIDEPSNEIVIWDALTAEKVAK---WSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKE  226 (228)
Q Consensus       167 ~~~~~~~~d~~i~i~d~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~  226 (228)
                      +++++++.|++.+|||+|.......   ....|...|.+..|||.+..|+|.+.|..|+|||.
T Consensus       336 ~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~ds  398 (498)
T KOG4328|consen  336 WFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDS  398 (498)
T ss_pred             hheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeec
Confidence            9999999999999999987543321   12479999999999998888999999999999996

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=1.1e-26  Score=160.12  Aligned_cols=217  Identities=20%  Similarity=0.312  Sum_probs=174.1

Q ss_pred             CCcCCccccceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcc------c--------c---------------
Q 040370            1 FFDFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVN------T--------F---------------   51 (228)
Q Consensus         1 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~------~--------~---------------   51 (228)
                      ||.+.  ....+.+..+|.+.|++++|++.+.++++++.|++..||...      .        +               
T Consensus       174 iWs~E--sg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d  251 (481)
T KOG0300|consen  174 IWSLE--SGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTD  251 (481)
T ss_pred             EEeec--cccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccc
Confidence            34444  334556677999999999999999999999999999999721      0        0               


Q ss_pred             --------eEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCE
Q 040370           52 --------QCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRF  123 (228)
Q Consensus        52 --------~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  123 (228)
                              .....+....+ |.+.|.+..|...|+.+++++.|.+-.+||+++++.+..+.+|  ..+.+.++-+|..++
T Consensus       252 ~~~~sD~~tiRvPl~~ltg-H~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGH--d~ELtHcstHptQrL  328 (481)
T KOG0300|consen  252 SSEKSDGHTIRVPLMRLTG-HRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGH--DSELTHCSTHPTQRL  328 (481)
T ss_pred             cccccCCceeeeeeeeeec-cccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCc--chhccccccCCcceE
Confidence                    00011111223 3788899999999999999999999999999999999999987  678899999999999


Q ss_pred             EEEeeCCCeEEEEEccCC-eeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEE
Q 040370          124 VLSCGKDSTVKLWEVSSG-RLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRW  202 (228)
Q Consensus       124 l~~~~~d~~i~~wd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~  202 (228)
                      +++.+.|.+.++||++.. ..+..|++  |...+++..|..+.+  +++|++|.+|++||+++....... ....++++.
T Consensus       329 VvTsSrDtTFRLWDFReaI~sV~VFQG--HtdtVTS~vF~~dd~--vVSgSDDrTvKvWdLrNMRsplAT-IRtdS~~NR  403 (481)
T KOG0300|consen  329 VVTSSRDTTFRLWDFREAIQSVAVFQG--HTDTVTSVVFNTDDR--VVSGSDDRTVKVWDLRNMRSPLAT-IRTDSPANR  403 (481)
T ss_pred             EEEeccCceeEeccchhhcceeeeecc--cccceeEEEEecCCc--eeecCCCceEEEeeeccccCccee-eecCCccce
Confidence            999999999999999853 34566777  778888998887655  345677999999999988765444 245788999


Q ss_pred             EEeCCCCcEEEEecCCCCEEEeeec
Q 040370          203 IEHSPAEAAFITCGTDRSVRFWKEI  227 (228)
Q Consensus       203 ~~~~~~~~~l~s~~~dg~i~vwd~~  227 (228)
                      ++.+..+..++.--.+..|++||+.
T Consensus       404 vavs~g~~iIAiPhDNRqvRlfDln  428 (481)
T KOG0300|consen  404 VAVSKGHPIIAIPHDNRQVRLFDLN  428 (481)
T ss_pred             eEeecCCceEEeccCCceEEEEecC
Confidence            9999988899988888999999974

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=2e-26  Score=171.49  Aligned_cols=220  Identities=17%  Similarity=0.237  Sum_probs=176.9

Q ss_pred             CCcCCccccceeEEEeecCcceEEEEE-eCCCCEEEEecCCCeEEEEEcccceE--E------eeeccceeeeccceeeE
Q 040370            1 FFDFSKATAKRAFRVIQDTHNVRSVSF-HPSGDFLLAGTDHPIAHLYDVNTFQC--Y------LSANVPEISVNGAINQV   71 (228)
Q Consensus         1 iwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~l~~~~~d~~i~vw~~~~~~~--~------~~~~~~~~~~~~~i~~~   71 (228)
                      +|+......-..-.+..|.+.|.|+++ .++...+|+|+-|+.|.+||++++..  +      .......++ ...|.++
T Consensus        99 ~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~-k~siYSL  177 (735)
T KOG0308|consen   99 VWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGP-KDSIYSL  177 (735)
T ss_pred             EeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCC-ccceeee
Confidence            355554432222334479999999999 77899999999999999999997732  1      111122233 7889999


Q ss_pred             EeCCCCCeEEEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecce
Q 040370           72 RYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGAT  151 (228)
Q Consensus        72 ~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~  151 (228)
                      +.++.|..+++|+..+.+++||.++++.+..+.+|  ...|.++..++||..+++++.||+|++||+...+++.++..  
T Consensus       178 A~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGH--TdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~v--  253 (735)
T KOG0308|consen  178 AMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGH--TDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIV--  253 (735)
T ss_pred             ecCCcceEEEecCcccceEEeccccccceeeeecc--ccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEe--
Confidence            99999999999999999999999999999999976  78999999999999999999999999999999999999877  


Q ss_pred             eeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370          152 HTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEI  227 (228)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~  227 (228)
                      |...+.++..+|+-..+++++. ||.|..=|+++......+ .....+|..+..+...+-+-++..|+.|+-|...
T Consensus       254 H~e~VWaL~~~~sf~~vYsG~r-d~~i~~Tdl~n~~~~tli-ck~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~  327 (735)
T KOG0308|consen  254 HKEGVWALQSSPSFTHVYSGGR-DGNIYRTDLRNPAKSTLI-CKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLE  327 (735)
T ss_pred             ccCceEEEeeCCCcceEEecCC-CCcEEecccCCchhheEe-ecCCCchhhhhhccccCCceeeeccccceecCCc
Confidence            5666888888899899988666 899999999986433333 3455678888887655556777889999999764

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=4.5e-26  Score=162.63  Aligned_cols=201  Identities=15%  Similarity=0.230  Sum_probs=158.9

Q ss_pred             ceEEEEEeC-------CCCEEEEecCCCeEEEEEcccceEEeee-----------------ccceeeeccceeeEEeCCC
Q 040370           21 NVRSVSFHP-------SGDFLLAGTDHPIAHLYDVNTFQCYLSA-----------------NVPEISVNGAINQVRYSST   76 (228)
Q Consensus        21 ~v~~~~~~~-------~~~~l~~~~~d~~i~vw~~~~~~~~~~~-----------------~~~~~~~~~~i~~~~~~~~   76 (228)
                      ...|++|..       .|+++|.|+.|..|.|||+.-...+...                 .....+|...|.++.|+..
T Consensus       175 fPLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~  254 (463)
T KOG0270|consen  175 FPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRN  254 (463)
T ss_pred             cchhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccc
Confidence            345666643       3689999999999999998632211110                 0111234778889999874


Q ss_pred             -CCeEEEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECC-CCCEEEEeeCCCeEEEEEccCCeeE-EEEecceee
Q 040370           77 -GGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTK-DQRFVLSCGKDSTVKLWEVSSGRLV-KQYLGATHT  153 (228)
Q Consensus        77 -~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~-~~~~~~~~~  153 (228)
                       .+.||+||.|.+|++||+.++++...+..+  ...|.++.|+| ...+|++|+.|+++.+.|.|..... ..++   -.
T Consensus       255 ~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~--~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk---~~  329 (463)
T KOG0270|consen  255 FRNVLASGSADKTVKLWDVDTGKPKSSITHH--GKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWK---FD  329 (463)
T ss_pred             cceeEEecCCCceEEEEEcCCCCcceehhhc--CCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEE---ec
Confidence             568999999999999999999999988744  88999999999 6678999999999999999953322 2222   34


Q ss_pred             eeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCc-ceeEEeecCCCCCcEEEEeCCC-CcEEEEecCCCCEEEeeec
Q 040370          154 QLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTA-EKVAKWSSNHIGAPRWIEHSPA-EAAFITCGTDRSVRFWKEI  227 (228)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~~v~~~~~~~~-~~~l~s~~~dg~i~vwd~~  227 (228)
                      ..+-.+.|.|.....+.++.+||.++-+|+|+. +++.++ ..|.++|.++++++. ..+++|++.|+.|++|++.
T Consensus       330 g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~-~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~  404 (463)
T KOG0270|consen  330 GEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTL-KAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFD  404 (463)
T ss_pred             cceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEE-EeccCCcceEEecCCCCcceeeccccceEEEEeec
Confidence            557788999999888888888999999999987 566666 799999999999884 5689999999999999974

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.95  E-value=7.3e-27  Score=169.61  Aligned_cols=210  Identities=13%  Similarity=0.252  Sum_probs=170.3

Q ss_pred             eeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccce---EEeeeccceeeeccceeeEEeCCCCCeEEEEecCC
Q 040370           11 RAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQ---CYLSANVPEISVNGAINQVRYSSTGGMYVTASKDG   87 (228)
Q Consensus        11 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~---~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg   87 (228)
                      +.+..+.|.+-|.++.++...+++++|+. |.|+|||+....   .+..+....  ....|.++...|+|+.|++|++-.
T Consensus       411 rq~~tL~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~--rdnyiRSckL~pdgrtLivGGeas  487 (705)
T KOG0639|consen  411 RQINTLAHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLN--RDNYIRSCKLLPDGRTLIVGGEAS  487 (705)
T ss_pred             HhhhhhccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccccC--cccceeeeEecCCCceEEeccccc
Confidence            44566789999999999999999999985 789999997543   222222211  156799999999999999999999


Q ss_pred             eEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcE
Q 040370           88 AIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEF  167 (228)
Q Consensus        88 ~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (228)
                      ++.|||+...............-...+++.+||.+..+++..||.|.|||+.+...++.+++  |.....++..+++|..
T Consensus       488 tlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqG--htDGascIdis~dGtk  565 (705)
T KOG0639|consen  488 TLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQG--HTDGASCIDISKDGTK  565 (705)
T ss_pred             eeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccC--CCCCceeEEecCCCce
Confidence            99999998766544443332245677899999999999999999999999999999999998  6777888999999999


Q ss_pred             EEEeeCCCCeEEEEEcCCcceeEEe---------------------------------------ecCCCCCcEEEEeCCC
Q 040370          168 VLSIDEPSNEIVIWDALTAEKVAKW---------------------------------------SSNHIGAPRWIEHSPA  208 (228)
Q Consensus       168 ~~~~~~~d~~i~i~d~~~~~~~~~~---------------------------------------~~~~~~~v~~~~~~~~  208 (228)
                      +-++|- |+++|.||++++..+...                                       ...|.+.|.++.|.+.
T Consensus       566 lWTGGl-DntvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~kyqlhlheScVLSlKFa~c  644 (705)
T KOG0639|consen  566 LWTGGL-DNTVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEKYQLHLHESCVLSLKFAYC  644 (705)
T ss_pred             eecCCC-ccceeehhhhhhhhhhhhhhhhhheecccCCCccceeeecccCcEEEEecCCccceeecccccEEEEEEeccc
Confidence            998666 899999999887533211                                       1247888999999999


Q ss_pred             CcEEEEecCCCCEEEeee
Q 040370          209 EAAFITCGTDRSVRFWKE  226 (228)
Q Consensus       209 ~~~l~s~~~dg~i~vwd~  226 (228)
                      |+++++.|.|+.+..|..
T Consensus       645 GkwfvStGkDnlLnawrt  662 (705)
T KOG0639|consen  645 GKWFVSTGKDNLLNAWRT  662 (705)
T ss_pred             CceeeecCchhhhhhccC
Confidence            999999999999999975

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.94  E-value=1.1e-25  Score=167.06  Aligned_cols=192  Identities=19%  Similarity=0.330  Sum_probs=162.6

Q ss_pred             EEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCCCceeeEE
Q 040370           24 SVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSI  103 (228)
Q Consensus        24 ~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~  103 (228)
                      -++|+ ..+.+|+|.. ..|++|+..+++........    ...|+++.|+++|.+|++|..+|.|.|||..+.+.+..+
T Consensus       182 lldWs-s~n~laValg-~~vylW~~~s~~v~~l~~~~----~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~  255 (484)
T KOG0305|consen  182 LLDWS-SANVLAVALG-QSVYLWSASSGSVTELCSFG----EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTL  255 (484)
T ss_pred             Hhhcc-cCCeEEEEec-ceEEEEecCCCceEEeEecC----CCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccc
Confidence            36677 4556776664 57999999998855444432    678999999999999999999999999999999988888


Q ss_pred             ecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEc
Q 040370          104 VGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDA  183 (228)
Q Consensus       104 ~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~  183 (228)
                      ..+| ...|.+++|+  +..+.+|+.|+.|..+|++..+.... ....|...++.+.|++++.+++++|. |+.+.|||.
T Consensus       256 ~~~h-~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~-~~~~H~qeVCgLkws~d~~~lASGgn-DN~~~Iwd~  330 (484)
T KOG0305|consen  256 RGSH-ASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVS-TLQGHRQEVCGLKWSPDGNQLASGGN-DNVVFIWDG  330 (484)
T ss_pred             cCCc-CceeEEEecc--CceEEEecCCCcEEEEEEecchhhhh-hhhcccceeeeeEECCCCCeeccCCC-ccceEeccC
Confidence            8743 8899999998  67899999999999999998877666 23448889999999999999988665 899999999


Q ss_pred             CCcceeEEeecCCCCCcEEEEeCC-CCcEEEEec--CCCCEEEeeec
Q 040370          184 LTAEKVAKWSSNHIGAPRWIEHSP-AEAAFITCG--TDRSVRFWKEI  227 (228)
Q Consensus       184 ~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~--~dg~i~vwd~~  227 (228)
                      ...++...+ ..|...|.+++|+| ...+||+|+  .|++|++||..
T Consensus       331 ~~~~p~~~~-~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~  376 (484)
T KOG0305|consen  331 LSPEPKFTF-TEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTN  376 (484)
T ss_pred             CCccccEEE-eccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcC
Confidence            888888887 79999999999999 677899876  69999999974

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=4.3e-25  Score=170.05  Aligned_cols=201  Identities=15%  Similarity=0.189  Sum_probs=170.3

Q ss_pred             cCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCCC
Q 040370           18 DTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSA   97 (228)
Q Consensus        18 ~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~   97 (228)
                      +...|.+++.  .+.+|++|+.+++|.+|.+.+++.-..+...    .-++++++|+.+|++++.|+.|-.|++-++...
T Consensus        55 ~g~~v~~ia~--~s~~f~~~s~~~tv~~y~fps~~~~~iL~Rf----tlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~  128 (933)
T KOG1274|consen   55 SGELVSSIAC--YSNHFLTGSEQNTVLRYKFPSGEEDTILARF----TLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDS  128 (933)
T ss_pred             cCceeEEEee--cccceEEeeccceEEEeeCCCCCccceeeee----eccceEEEEecCCcEEEeecCceeEEEEecccc
Confidence            6777888876  5669999999999999999987754333322    567999999999999999999999999999999


Q ss_pred             ceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecce------eeeeeeEEEECCCCcEEEEe
Q 040370           98 NCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGAT------HTQLRFQAVFNDTEEFVLSI  171 (228)
Q Consensus        98 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~  171 (228)
                      .....+.+|  ..+|.++.|+|++++||+.+.||.|++||+.++....++.+-.      ....+..++|+|++..+++.
T Consensus       129 s~~~~lrgh--~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~  206 (933)
T KOG1274|consen  129 SQEKVLRGH--DAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVP  206 (933)
T ss_pred             chheeeccc--CCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEee
Confidence            888888887  8899999999999999999999999999999887766654321      24567789999998888877


Q ss_pred             eCCCCeEEEEEcCCcceeEEeecCCC-CCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370          172 DEPSNEIVIWDALTAEKVAKWSSNHI-GAPRWIEHSPAEAAFITCGTDRSVRFWKEI  227 (228)
Q Consensus       172 ~~~d~~i~i~d~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~  227 (228)
                      +. |+.|.+|+..+.+....+...+. ..+..++|+|+|+|||+++.||.|.|||..
T Consensus       207 ~~-d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~  262 (933)
T KOG1274|consen  207 PV-DNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVD  262 (933)
T ss_pred             cc-CCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEecc
Confidence            77 79999999999888887754443 348999999999999999999999999964

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=1.5e-25  Score=160.04  Aligned_cols=202  Identities=16%  Similarity=0.196  Sum_probs=162.0

Q ss_pred             ecCcceEEEEEeCC-CCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCC-CCCeEEEEecCCeEEEEeC
Q 040370           17 QDTHNVRSVSFHPS-GDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSS-TGGMYVTASKDGAIRLWDG   94 (228)
Q Consensus        17 ~~~~~v~~~~~~~~-~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~v~iwd~   94 (228)
                      +|+..|.+++|+.. .+.||+|+.|.+|++||+.++++...+.    ||.+.|.++.|+| ....|++|+.|++|.+.|.
T Consensus       241 gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~----~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~  316 (463)
T KOG0270|consen  241 GHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSIT----HHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDC  316 (463)
T ss_pred             cchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehh----hcCCceeEEEecCCCceEEEeccccceEEeeec
Confidence            68999999999884 5688999999999999999999887765    4489999999999 4679999999999999999


Q ss_pred             CCC-ceeeEEecccccceeEEEEECCC-CCEEEEeeCCCeEEEEEccCC-eeEEEEecceeeeeeeEEEECCCCcEEEEe
Q 040370           95 VSA-NCVRSIVGAHGTAEATSANFTKD-QRFVLSCGKDSTVKLWEVSSG-RLVKQYLGATHTQLRFQAVFNDTEEFVLSI  171 (228)
Q Consensus        95 ~~~-~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~d~~i~~wd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (228)
                      +.. ..-..++.   .+.|-.++|.|. ...++++..||+++-+|+|+. +++.+++.  |...+..+++++..+.++++
T Consensus       317 R~~~~s~~~wk~---~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~A--Hd~~ISgl~~n~~~p~~l~t  391 (463)
T KOG0270|consen  317 RDPSNSGKEWKF---DGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKA--HDDEISGLSVNIQTPGLLST  391 (463)
T ss_pred             cCccccCceEEe---ccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEe--ccCCcceEEecCCCCcceee
Confidence            943 33334443   567889999994 457888889999999999986 67777766  77899999999999999999


Q ss_pred             eCCCCeEEEEEcCCcceeEEee-cCCCCCcEEEEeCCCC-cEEEEecCCCCEEEeeec
Q 040370          172 DEPSNEIVIWDALTAEKVAKWS-SNHIGAPRWIEHSPAE-AAFITCGTDRSVRFWKEI  227 (228)
Q Consensus       172 ~~~d~~i~i~d~~~~~~~~~~~-~~~~~~v~~~~~~~~~-~~l~s~~~dg~i~vwd~~  227 (228)
                      ++.|+.+++|++....+..... .-.-+...|.++.|+- -.++.||..+.++|||+.
T Consensus       392 ~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~  449 (463)
T KOG0270|consen  392 ASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIF  449 (463)
T ss_pred             ccccceEEEEeecCCCCcccccccccccceeecccCCCcceEEEecCccceEEEeecc
Confidence            9999999999987554433221 1122346667777754 467788888889999975

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=8e-25  Score=149.89  Aligned_cols=207  Identities=17%  Similarity=0.258  Sum_probs=153.7

Q ss_pred             ecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCC--CCCeEEEEecCCeEEEEeC
Q 040370           17 QDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSS--TGGMYVTASKDGAIRLWDG   94 (228)
Q Consensus        17 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~~dg~v~iwd~   94 (228)
                      +|.+-|.++.|.+.|+++|+|+.|++++|||.++..........-..|.+.|..+.|.+  -|+.+|+++.|+++.||.-
T Consensus        11 ~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE   90 (361)
T KOG2445|consen   11 GHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEE   90 (361)
T ss_pred             CCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeee
Confidence            68889999999999999999999999999997665433333333334488999999965  5899999999999999974


Q ss_pred             CCC-------c--eeeEEecccccceeEEEEECC--CCCEEEEeeCCCeEEEEEccCCeeE-------------------
Q 040370           95 VSA-------N--CVRSIVGAHGTAEATSANFTK--DQRFVLSCGKDSTVKLWEVSSGRLV-------------------  144 (228)
Q Consensus        95 ~~~-------~--~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~~d~~i~~wd~~~~~~~-------------------  144 (228)
                      ...       +  ...++..  ....|+.+.|.|  -|-.|++++.||.+|||+......+                   
T Consensus        91 ~~~~~~~~~~~Wv~~ttl~D--srssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~  168 (361)
T KOG2445|consen   91 QEKSEEAHGRRWVRRTTLVD--SRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKN  168 (361)
T ss_pred             cccccccccceeEEEEEeec--CCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccc
Confidence            211       1  1223333  377899999999  5678999999999999975321000                   


Q ss_pred             ---------------------------------EEE-------------ecceeeeeeeEEEECCCC---cEEEEeeCCC
Q 040370          145 ---------------------------------KQY-------------LGATHTQLRFQAVFNDTE---EFVLSIDEPS  175 (228)
Q Consensus       145 ---------------------------------~~~-------------~~~~~~~~~~~~~~~~~~---~~~~~~~~~d  175 (228)
                                                       ..+             ....+..++..++|.|+-   -++++.+..|
T Consensus       169 ~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kD  248 (361)
T KOG2445|consen  169 KQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKD  248 (361)
T ss_pred             cCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecC
Confidence                                             000             011245677888888863   3566667778


Q ss_pred             CeEEEEEcCCcc--------------------eeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370          176 NEIVIWDALTAE--------------------KVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEI  227 (228)
Q Consensus       176 ~~i~i~d~~~~~--------------------~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~  227 (228)
                      | |+||.++...                    .+..+ ..|.++|..+.|+-.|..|++.|.||.|++|+..
T Consensus       249 g-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~-~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkan  318 (361)
T KOG2445|consen  249 G-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSEL-DDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKAN  318 (361)
T ss_pred             c-EEEEEEeeccchhhhhcccCCCCccccceEEeeec-cCCCCceEEEEEeeeeeEEeecCCCceeeehhhh
Confidence            8 9999987311                    12222 6899999999999999999999999999999753

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.94  E-value=5.5e-25  Score=150.29  Aligned_cols=207  Identities=13%  Similarity=0.124  Sum_probs=154.7

Q ss_pred             CcCCccccceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCC--e
Q 040370            2 FDFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGG--M   79 (228)
Q Consensus         2 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~   79 (228)
                      |+++............|.++|.+++|+.+|..+++|+.|+.+++||+.+++....-     .|.++|.++.|-+...  .
T Consensus        55 wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~~~v~-----~Hd~pvkt~~wv~~~~~~c  129 (347)
T KOG0647|consen   55 WEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQVSQVA-----AHDAPVKTCHWVPGMNYQC  129 (347)
T ss_pred             EEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCCeeeee-----ecccceeEEEEecCCCcce
Confidence            55554322222334468999999999999999999999999999999998653322     2389999999987554  8


Q ss_pred             EEEEecCCeEEEEeCCCCceeeEEeccc---------------------------------------ccceeEEEEECCC
Q 040370           80 YVTASKDGAIRLWDGVSANCVRSIVGAH---------------------------------------GTAEATSANFTKD  120 (228)
Q Consensus        80 l~~~~~dg~v~iwd~~~~~~~~~~~~~~---------------------------------------~~~~i~~~~~~~~  120 (228)
                      |+|||.|.+|+.||++...++..+....                                       -+-.+.|++..++
T Consensus       130 l~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d  209 (347)
T KOG0647|consen  130 LVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQD  209 (347)
T ss_pred             eEecccccceeecccCCCCeeeeeeccceeeehhccCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEec
Confidence            9999999999999999877766654321                                       1224566666666


Q ss_pred             CCEEEEeeCCCeEEEEEccCC--eeEEEEeccee-------eeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEE
Q 040370          121 QRFVLSCGKDSTVKLWEVSSG--RLVKQYLGATH-------TQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAK  191 (228)
Q Consensus       121 ~~~l~~~~~d~~i~~wd~~~~--~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~  191 (228)
                      ....+.|+-+|.+.+-.+..+  +.-..++.|..       --.+..++|+|....+++.|+ ||++.+||-.....+..
T Consensus       210 ~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGs-DGtf~FWDkdar~kLk~  288 (347)
T KOG0647|consen  210 KDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGS-DGTFSFWDKDARTKLKT  288 (347)
T ss_pred             CCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecC-CceEEEecchhhhhhhc
Confidence            666677777777777777665  33333443321       235667899998888888888 89999999877777766


Q ss_pred             eecCCCCCcEEEEeCCCCcEEEEe
Q 040370          192 WSSNHIGAPRWIEHSPAEAAFITC  215 (228)
Q Consensus       192 ~~~~~~~~v~~~~~~~~~~~l~s~  215 (228)
                      . ..|..+|++..|+.+|.+++-+
T Consensus       289 s-~~~~qpItcc~fn~~G~ifaYA  311 (347)
T KOG0647|consen  289 S-ETHPQPITCCSFNRNGSIFAYA  311 (347)
T ss_pred             c-CcCCCccceeEecCCCCEEEEE
Confidence            6 6899999999999999988754

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.94  E-value=1.3e-23  Score=153.40  Aligned_cols=198  Identities=17%  Similarity=0.192  Sum_probs=149.0

Q ss_pred             cceEEEEEeCCCCEEEEe-cCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCC-eEEEEeCCCC
Q 040370           20 HNVRSVSFHPSGDFLLAG-TDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDG-AIRLWDGVSA   97 (228)
Q Consensus        20 ~~v~~~~~~~~~~~l~~~-~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-~v~iwd~~~~   97 (228)
                      ..+..++|+|+++.++++ ..++.+++||+.+.+.+.....     ...+.+++|+|+++.+++++.++ .+.+||.+++
T Consensus        73 ~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-----~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~  147 (300)
T TIGR03866        73 PDPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV-----GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTY  147 (300)
T ss_pred             CCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC-----CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCC
Confidence            345788999999877654 5689999999998776554432     23467899999999999888765 5677899887


Q ss_pred             ceeeEEecccccceeEEEEECCCCCEEEEe-eCCCeEEEEEccCCeeEEEEecce-----eeeeeeEEEECCCCcEEEEe
Q 040370           98 NCVRSIVGAHGTAEATSANFTKDQRFVLSC-GKDSTVKLWEVSSGRLVKQYLGAT-----HTQLRFQAVFNDTEEFVLSI  171 (228)
Q Consensus        98 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~d~~i~~wd~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~  171 (228)
                      +.......   ......++|+|++++++.+ ..++.|++||+++++.+..+....     .......+.++|++++++++
T Consensus       148 ~~~~~~~~---~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~  224 (300)
T TIGR03866       148 EIVDNVLV---DQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVA  224 (300)
T ss_pred             eEEEEEEc---CCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEE
Confidence            76655443   2345678999999988544 568999999999988766654211     11123457889999987766


Q ss_pred             eCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEe-cCCCCEEEeeec
Q 040370          172 DEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITC-GTDRSVRFWKEI  227 (228)
Q Consensus       172 ~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~~dg~i~vwd~~  227 (228)
                      ...++.+.+||+++++......  +...+.+++|+|++++|+++ +.+|.|++||+.
T Consensus       225 ~~~~~~i~v~d~~~~~~~~~~~--~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~  279 (300)
T TIGR03866       225 LGPANRVAVVDAKTYEVLDYLL--VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVA  279 (300)
T ss_pred             cCCCCeEEEEECCCCcEEEEEE--eCCCcceEEECCCCCEEEEEcCCCCeEEEEECC
Confidence            5556889999999888766552  34578999999999999876 569999999974

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.94  E-value=2.3e-25  Score=148.66  Aligned_cols=177  Identities=19%  Similarity=0.322  Sum_probs=151.6

Q ss_pred             CCcCCccccceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeE
Q 040370            1 FFDFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMY   80 (228)
Q Consensus         1 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l   80 (228)
                      |||++.+.. ++.++.+|++.|+.+-|....+.|++++.|++|++||..++..++.+..     +.+|+++..+++|+++
T Consensus       126 vfdln~p~A-pp~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~-----~s~VtSlEvs~dG~il  199 (334)
T KOG0278|consen  126 VFDLNRPKA-PPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEF-----NSPVTSLEVSQDGRIL  199 (334)
T ss_pred             hhhccCCCC-CchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEec-----CCCCcceeeccCCCEE
Confidence            466666543 4556779999999999999888999999999999999999998888776     6789999999999866


Q ss_pred             EEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEE
Q 040370           81 VTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAV  160 (228)
Q Consensus        81 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~  160 (228)
                      .++ ..+.|..||..+...++.+..   +..|.+..++|+...+++|+.|..++.||..+++.+..+ ...|..++.++.
T Consensus       200 Tia-~gssV~Fwdaksf~~lKs~k~---P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~-nkgh~gpVhcVr  274 (334)
T KOG0278|consen  200 TIA-YGSSVKFWDAKSFGLLKSYKM---PCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSY-NKGHFGPVHCVR  274 (334)
T ss_pred             EEe-cCceeEEeccccccceeeccC---ccccccccccCCCceEEecCcceEEEEEeccCCceeeec-ccCCCCceEEEE
Confidence            554 567899999999999988877   668899999999999999999999999999999998886 233888999999


Q ss_pred             ECCCCcEEEEeeCCCCeEEEEEcCCccee
Q 040370          161 FNDTEEFVLSIDEPSNEIVIWDALTAEKV  189 (228)
Q Consensus       161 ~~~~~~~~~~~~~~d~~i~i~d~~~~~~~  189 (228)
                      |+|+|...++ |++||+|++|....++..
T Consensus       275 FSPdGE~yAs-GSEDGTirlWQt~~~~~~  302 (334)
T KOG0278|consen  275 FSPDGELYAS-GSEDGTIRLWQTTPGKTY  302 (334)
T ss_pred             ECCCCceeec-cCCCceEEEEEecCCCch
Confidence            9999998776 566999999998766554

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=8e-25  Score=150.56  Aligned_cols=202  Identities=18%  Similarity=0.260  Sum_probs=157.7

Q ss_pred             eecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCC
Q 040370           16 IQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGV   95 (228)
Q Consensus        16 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~   95 (228)
                      +.+.. ..|+.|++.|.+||+|+.||.|.|||+.+......+   ..| ..+|++++||++|+.|+|+|.|..|.+||+.
T Consensus        21 ld~~~-a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~l---saH-~~pi~sl~WS~dgr~LltsS~D~si~lwDl~   95 (405)
T KOG1273|consen   21 LDNPL-AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARML---SAH-VRPITSLCWSRDGRKLLTSSRDWSIKLWDLL   95 (405)
T ss_pred             ccCCc-cceEEeccCcceeeeeccCCcEEEEEccccchhhhh---hcc-ccceeEEEecCCCCEeeeecCCceeEEEecc
Confidence            34444 889999999999999999999999999987643322   233 8899999999999999999999999999999


Q ss_pred             CCceeeEEecccccceeEEEEECC-CCCEEEEeeCCCeEEEEEccCCeeEEEEecce---eeeeeeEEEECCCCcEEEEe
Q 040370           96 SANCVRSIVGAHGTAEATSANFTK-DQRFVLSCGKDSTVKLWEVSSGRLVKQYLGAT---HTQLRFQAVFNDTEEFVLSI  171 (228)
Q Consensus        96 ~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~  171 (228)
                      .|.+++.+..   ..+|....|+| +.+.+++.-.+..-.+-++..++.. .+....   .........|.+.|++++++
T Consensus        96 ~gs~l~rirf---~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~-~Lp~d~d~dln~sas~~~fdr~g~yIitG  171 (405)
T KOG1273|consen   96 KGSPLKRIRF---DSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHS-VLPKDDDGDLNSSASHGVFDRRGKYIITG  171 (405)
T ss_pred             CCCceeEEEc---cCccceeeeccccCCeEEEEEecCCcEEEEecCCcee-eccCCCccccccccccccccCCCCEEEEe
Confidence            9999998877   77999999999 3344444444555566666542211 111111   11222334588999999998


Q ss_pred             eCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370          172 DEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEI  227 (228)
Q Consensus       172 ~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~  227 (228)
                      .+ .|.+.++|..+.+++..+.......|.++.++..|+.|+.-+.|..|+.|++.
T Consensus       172 ts-KGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~  226 (405)
T KOG1273|consen  172 TS-KGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEIS  226 (405)
T ss_pred             cC-cceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehh
Confidence            77 59999999999999888744444789999999999999999999999999864

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.94  E-value=5.8e-25  Score=167.84  Aligned_cols=198  Identities=16%  Similarity=0.267  Sum_probs=177.3

Q ss_pred             CcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCCCc
Q 040370           19 THNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSAN   98 (228)
Q Consensus        19 ~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~   98 (228)
                      ...+++++.++-|++.+.|...|.|-+|++++|-....+.....| .++|+.++...-++.+++++.+|.++.||..+..
T Consensus       448 ~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah-~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~  526 (910)
T KOG1539|consen  448 DINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAH-KGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKV  526 (910)
T ss_pred             CcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccc-cCceeEEEecCCCceEEEccCcceEEEEecCCcc
Confidence            378999999999999999999999999999999877776433334 8999999999889999999999999999999888


Q ss_pred             eeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCCeE
Q 040370           99 CVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEI  178 (228)
Q Consensus        99 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i  178 (228)
                      .+..+..   ...+.++..+.....++.+..|-.|+++|..+.+.++.+.+  |...+..++|+|+|+++++++- |++|
T Consensus       527 l~~~l~l---~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~g--h~nritd~~FS~DgrWlisasm-D~tI  600 (910)
T KOG1539|consen  527 LKKSLRL---GSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWG--HGNRITDMTFSPDGRWLISASM-DSTI  600 (910)
T ss_pred             eeeeecc---CCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhc--cccceeeeEeCCCCcEEEEeec-CCcE
Confidence            7777766   56788888888888999999999999999999999999988  7888999999999999999766 8999


Q ss_pred             EEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCC-CCEEEee
Q 040370          179 VIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTD-RSVRFWK  225 (228)
Q Consensus       179 ~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d-g~i~vwd  225 (228)
                      ++||+.++..+-.+  .-..+..++.|+|+|.+|||...| .-|.+|-
T Consensus       601 r~wDlpt~~lID~~--~vd~~~~sls~SPngD~LAT~Hvd~~gIylWs  646 (910)
T KOG1539|consen  601 RTWDLPTGTLIDGL--LVDSPCTSLSFSPNGDFLATVHVDQNGIYLWS  646 (910)
T ss_pred             EEEeccCcceeeeE--ecCCcceeeEECCCCCEEEEEEecCceEEEEE
Confidence            99999999999887  456789999999999999999988 6699995

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.94  E-value=7.2e-25  Score=164.28  Aligned_cols=198  Identities=22%  Similarity=0.382  Sum_probs=162.4

Q ss_pred             ccceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCC
Q 040370            8 TAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDG   87 (228)
Q Consensus         8 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg   87 (228)
                      ...+...+.+|...|.|++...++. +++|+.|.++++|......  ..   ..+| ...|.+++.-|++ .++||+.|.
T Consensus        90 ~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~~l~--~~---l~gH-~asVWAv~~l~e~-~~vTgsaDK  161 (745)
T KOG0301|consen   90 QAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIGELV--YS---LQGH-TASVWAVASLPEN-TYVTGSADK  161 (745)
T ss_pred             CCCchhhhhccccceeeeecCCcCc-eEecccccceEEecchhhh--cc---cCCc-chheeeeeecCCC-cEEeccCcc
Confidence            3455667789999999999877776 9999999999999876533  22   2234 8999999999987 799999999


Q ss_pred             eEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcE
Q 040370           88 AIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEF  167 (228)
Q Consensus        88 ~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (228)
                      +|++|.-  ++.++++.+|  ...|..+++-+++ .+++++.||.|++|++ +++.+..+.+  |...++++....++..
T Consensus       162 tIklWk~--~~~l~tf~gH--tD~VRgL~vl~~~-~flScsNDg~Ir~w~~-~ge~l~~~~g--htn~vYsis~~~~~~~  233 (745)
T KOG0301|consen  162 TIKLWKG--GTLLKTFSGH--TDCVRGLAVLDDS-HFLSCSNDGSIRLWDL-DGEVLLEMHG--HTNFVYSISMALSDGL  233 (745)
T ss_pred             eeeeccC--Cchhhhhccc--hhheeeeEEecCC-CeEeecCCceEEEEec-cCceeeeeec--cceEEEEEEecCCCCe
Confidence            9999974  7888999886  7899999998765 4889999999999999 7788888877  7788888887788888


Q ss_pred             EEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeee
Q 040370          168 VLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKE  226 (228)
Q Consensus       168 ~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~  226 (228)
                      ++++|. |+++++|+..  ++...+ ......++++.+-++|. +++|+.||.|+||-.
T Consensus       234 Ivs~gE-DrtlriW~~~--e~~q~I-~lPttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~  287 (745)
T KOG0301|consen  234 IVSTGE-DRTLRIWKKD--ECVQVI-TLPTTSIWSAKVLLNGD-IVVGGSDGRVRVFTV  287 (745)
T ss_pred             EEEecC-CceEEEeecC--ceEEEE-ecCccceEEEEEeeCCC-EEEeccCceEEEEEe
Confidence            888776 8999999976  455444 23344899999888887 778889999999964

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=1.3e-23  Score=157.15  Aligned_cols=218  Identities=12%  Similarity=0.193  Sum_probs=171.6

Q ss_pred             CCcCCccccceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeE
Q 040370            1 FFDFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMY   80 (228)
Q Consensus         1 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l   80 (228)
                      ||++...-..+..-..+....|-+++|+ ++..|.+.+-+|.|.-||+.+++........    .+.|.+++.+|.+..+
T Consensus        51 iwN~~~~w~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~----gg~IWsiai~p~~~~l  125 (691)
T KOG2048|consen   51 IWNLSNNWFLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDLHTLKQKYNIDSN----GGAIWSIAINPENTIL  125 (691)
T ss_pred             EEccCCCceeeEEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEecccCceeEEecCC----CcceeEEEeCCccceE
Confidence            4665543222222222445789999999 5667788888999999999999987777654    7889999999999999


Q ss_pred             EEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEe-----cce-eee
Q 040370           81 VTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYL-----GAT-HTQ  154 (228)
Q Consensus        81 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~-----~~~-~~~  154 (228)
                      +.|+.||.+..++...+............+.+.++.|+|++..+++|+.||.|++||...+..+....     ... ...
T Consensus       126 ~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~  205 (691)
T KOG2048|consen  126 AIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPT  205 (691)
T ss_pred             EeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCce
Confidence            99999998888888877766555444447899999999999999999999999999999988776221     111 344


Q ss_pred             eeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeee
Q 040370          155 LRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKE  226 (228)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~  226 (228)
                      .+.++.+-. ...++++.+ -|.|.+||...+.....+ ..|...|.+++..+++++++++|.|+.|..+..
T Consensus       206 iVWSv~~Lr-d~tI~sgDS-~G~V~FWd~~~gTLiqS~-~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~  274 (691)
T KOG2048|consen  206 IVWSVLFLR-DSTIASGDS-AGTVTFWDSIFGTLIQSH-SCHDADVLALAVADNEDRVFSAGVDPKIIQYSL  274 (691)
T ss_pred             EEEEEEEee-cCcEEEecC-CceEEEEcccCcchhhhh-hhhhcceeEEEEcCCCCeEEEccCCCceEEEEe
Confidence            556666653 344566555 599999999999998888 789999999999999999999999999887754

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.94  E-value=1.1e-24  Score=153.80  Aligned_cols=206  Identities=14%  Similarity=0.257  Sum_probs=163.1

Q ss_pred             eecCcceEEEEEeC-CCCEEEEecCCCeEEEEEcccceEEeeec----cceeeeccceeeEEeCCC-CCeEEEEecCCeE
Q 040370           16 IQDTHNVRSVSFHP-SGDFLLAGTDHPIAHLYDVNTFQCYLSAN----VPEISVNGAINQVRYSST-GGMYVTASKDGAI   89 (228)
Q Consensus        16 ~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~vw~~~~~~~~~~~~----~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~v   89 (228)
                      -+|+++|..++|+| +.+.||+|++|.+|.||++..+.....+.    ...+| ...|--++|+|. .+.|++++.|..|
T Consensus        78 ~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH-~rrVg~V~wHPtA~NVLlsag~Dn~v  156 (472)
T KOG0303|consen   78 CGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGH-QRRVGLVQWHPTAPNVLLSAGSDNTV  156 (472)
T ss_pred             cCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeec-ceeEEEEeecccchhhHhhccCCceE
Confidence            48999999999999 67789999999999999997755433222    23344 889999999995 5689999999999


Q ss_pred             EEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEE
Q 040370           90 RLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVL  169 (228)
Q Consensus        90 ~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (228)
                      .+||+.+++.+..+. |  ...|.++.|+.+|.+|++.+.|+.|+|||.++++.+..-..| .......+.|-.++. ++
T Consensus       157 ~iWnv~tgeali~l~-h--pd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~h-eG~k~~Raifl~~g~-i~  231 (472)
T KOG0303|consen  157 SIWNVGTGEALITLD-H--PDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAH-EGAKPARAIFLASGK-IF  231 (472)
T ss_pred             EEEeccCCceeeecC-C--CCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccc-cCCCcceeEEeccCc-ee
Confidence            999999999888876 3  889999999999999999999999999999999998877554 233445666777777 66


Q ss_pred             EeeC---CCCeEEEEEcCCcceeEEee-cCCCCCcEEEEeCCCCcEEEEec-CCCCEEEeeec
Q 040370          170 SIDE---PSNEIVIWDALTAEKVAKWS-SNHIGAPRWIEHSPAEAAFITCG-TDRSVRFWKEI  227 (228)
Q Consensus       170 ~~~~---~d~~i~i~d~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~s~~-~dg~i~vwd~~  227 (228)
                      ++|.   .+.++-+||..+.+....+. ....+.|.---+.|+...+..+| .|+.|+.|.+.
T Consensus       232 tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit  294 (472)
T KOG0303|consen  232 TTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEIT  294 (472)
T ss_pred             eeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEec
Confidence            6553   36889999987765543332 23445666666788888777665 69999998763

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=3.5e-24  Score=153.88  Aligned_cols=199  Identities=14%  Similarity=0.229  Sum_probs=166.0

Q ss_pred             CcceEEEEEeCCCCEEEEecCCCeEEEEEcccceE--EeeeccceeeeccceeeEEeCCCCC-eEEEEecCCeEEEEeCC
Q 040370           19 THNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQC--YLSANVPEISVNGAINQVRYSSTGG-MYVTASKDGAIRLWDGV   95 (228)
Q Consensus        19 ~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~v~iwd~~   95 (228)
                      .++|+++.|+|....+++++.|+.+++|.++....  ++....   . ..+|.+.+|.|+|. .+++++....++.||+.
T Consensus       213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l---~-~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle  288 (514)
T KOG2055|consen  213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHL---E-KFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLE  288 (514)
T ss_pred             cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeee---c-cCccceeeecCCCceEEEecccceEEEEeecc
Confidence            46899999999999999999999999999875432  222222   2 67899999999998 89999999999999998


Q ss_pred             CCceeeE--EecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeC
Q 040370           96 SANCVRS--IVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDE  173 (228)
Q Consensus        96 ~~~~~~~--~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (228)
                      +.+..+.  ..+.. ...+.....++++++|+..+..|.|.+....+++.+..++   ....+..++|+.+++.++++++
T Consensus       289 ~ak~~k~~~~~g~e-~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K---ieG~v~~~~fsSdsk~l~~~~~  364 (514)
T KOG2055|consen  289 TAKVTKLKPPYGVE-EKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK---IEGVVSDFTFSSDSKELLASGG  364 (514)
T ss_pred             ccccccccCCCCcc-cchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee---eccEEeeEEEecCCcEEEEEcC
Confidence            8764432  22322 4467788899999999999999999999999999998887   4667889999999999999888


Q ss_pred             CCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeee
Q 040370          174 PSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKE  226 (228)
Q Consensus       174 ~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~  226 (228)
                       +|.|.+||++...++..+.....-.-++++.++++.+||+|+..|.|.|||.
T Consensus       365 -~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~  416 (514)
T KOG2055|consen  365 -TGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDG  416 (514)
T ss_pred             -CceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEecc
Confidence             6999999999999988885443334566778899999999999999999984

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.93  E-value=3.7e-26  Score=179.43  Aligned_cols=210  Identities=13%  Similarity=0.222  Sum_probs=165.0

Q ss_pred             ecCcceEEEEEeCCCCE----EEEecCCCeEEEEEccc---ceEEeeeccceeeeccceeeEEeCCC-CCeEEEEecCCe
Q 040370           17 QDTHNVRSVSFHPSGDF----LLAGTDHPIAHLYDVNT---FQCYLSANVPEISVNGAINQVRYSST-GGMYVTASKDGA   88 (228)
Q Consensus        17 ~~~~~v~~~~~~~~~~~----l~~~~~d~~i~vw~~~~---~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~   88 (228)
                      .-....+.++|.+.+..    ||.|.+||.|.+||...   +.....+..... |.+.|..+.|++. ++.|++|+.||.
T Consensus        62 ~s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~-h~G~V~gLDfN~~q~nlLASGa~~ge  140 (1049)
T KOG0307|consen   62 QSSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSK-HTGPVLGLDFNPFQGNLLASGADDGE  140 (1049)
T ss_pred             cccccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcc-cCCceeeeeccccCCceeeccCCCCc
Confidence            34567899999997665    88899999999999876   232222333333 4899999999995 559999999999


Q ss_pred             EEEEeCCCCceeeEEecccccceeEEEEECC-CCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcE
Q 040370           89 IRLWDGVSANCVRSIVGAHGTAEATSANFTK-DQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEF  167 (228)
Q Consensus        89 v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (228)
                      |.|||+.+.+.............|.+++|+. ....|++++.+|.+.|||++..+.+-.+..+.....+..+.|+|+...
T Consensus       141 I~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aT  220 (1049)
T KOG0307|consen  141 ILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHAT  220 (1049)
T ss_pred             EEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCce
Confidence            9999999866555543333477899999998 456788999999999999999888777765544556788999999754


Q ss_pred             EEEeeCC-C--CeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCC-cEEEEecCCCCEEEeeec
Q 040370          168 VLSIDEP-S--NEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAE-AAFITCGTDRSVRFWKEI  227 (228)
Q Consensus       168 ~~~~~~~-d--~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~dg~i~vwd~~  227 (228)
                      -+..+++ |  -.|.+||+|..........+|...|.++.|++.+ .+|+|++.|+.|.+|+..
T Consensus       221 ql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~  284 (1049)
T KOG0307|consen  221 QLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPN  284 (1049)
T ss_pred             eeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCC
Confidence            3333332 3  4799999998776666658999999999999955 899999999999999863

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=1.3e-25  Score=159.39  Aligned_cols=172  Identities=22%  Similarity=0.312  Sum_probs=137.1

Q ss_pred             cceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCe
Q 040370            9 AKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGA   88 (228)
Q Consensus         9 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~   88 (228)
                      .+...++.+|..+|.-+.||||.++|++++.+..+.+||..+|+....+...   +...+.+++|.|||..+++|+.|+.
T Consensus       259 ~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~---~~~S~~sc~W~pDg~~~V~Gs~dr~  335 (519)
T KOG0293|consen  259 FKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSG---LGFSVSSCAWCPDGFRFVTGSPDRT  335 (519)
T ss_pred             eeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccC---cCCCcceeEEccCCceeEecCCCCc
Confidence            3456677799999999999999999999999999999999999976655433   2578899999999999999999999


Q ss_pred             EEEEeCCCCc-------e---eeEEe------------cc-----------------cccceeEEEEECCC---------
Q 040370           89 IRLWDGVSAN-------C---VRSIV------------GA-----------------HGTAEATSANFTKD---------  120 (228)
Q Consensus        89 v~iwd~~~~~-------~---~~~~~------------~~-----------------~~~~~i~~~~~~~~---------  120 (228)
                      +..||+....       .   +..+.            .+                 ....+|++++.+.+         
T Consensus       336 i~~wdlDgn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~  415 (519)
T KOG0293|consen  336 IIMWDLDGNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQ  415 (519)
T ss_pred             EEEecCCcchhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcc
Confidence            9999865321       0   00000            00                 01223444444433         


Q ss_pred             ------------------------------------CCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCC
Q 040370          121 ------------------------------------QRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDT  164 (228)
Q Consensus       121 ------------------------------------~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (228)
                                                          ..++++|++|+.|++|+..+++++..+.+  |...+.+++|+|.
T Consensus       416 ~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsG--Hs~~vNcVswNP~  493 (519)
T KOG0293|consen  416 DQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSG--HSKTVNCVSWNPA  493 (519)
T ss_pred             cCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecC--CcceeeEEecCCC
Confidence                                                46789999999999999999999999988  7788999999999


Q ss_pred             CcEEEEeeCCCCeEEEEEcCC
Q 040370          165 EEFVLSIDEPSNEIVIWDALT  185 (228)
Q Consensus       165 ~~~~~~~~~~d~~i~i~d~~~  185 (228)
                      ...+++++++||+|+||-...
T Consensus       494 ~p~m~ASasDDgtIRIWg~~~  514 (519)
T KOG0293|consen  494 DPEMFASASDDGTIRIWGPSD  514 (519)
T ss_pred             CHHHhhccCCCCeEEEecCCc
Confidence            999999999999999998653

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=8.2e-24  Score=151.99  Aligned_cols=212  Identities=12%  Similarity=0.219  Sum_probs=169.0

Q ss_pred             ceeEEEeecCcceEEEEEeCCCC-EEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCe
Q 040370           10 KRAFRVIQDTHNVRSVSFHPSGD-FLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGA   88 (228)
Q Consensus        10 ~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~   88 (228)
                      +.+..+.-...+|.+.+|.|+|. .+++++.....+.||+.+.+..+.... .+.....+.....+|++++|+..+..|.
T Consensus       248 ~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~-~g~e~~~~e~FeVShd~~fia~~G~~G~  326 (514)
T KOG2055|consen  248 PKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPP-YGVEEKSMERFEVSHDSNFIAIAGNNGH  326 (514)
T ss_pred             hhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccccccccCC-CCcccchhheeEecCCCCeEEEcccCce
Confidence            33444444577999999999998 889999999999999998775443333 2332557888899999999999999999


Q ss_pred             EEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEE
Q 040370           89 IRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFV  168 (228)
Q Consensus        89 v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (228)
                      |.+....+++.+..++.   .+.+..++|+.+++.|++++.+|.|.+||++...+++++... .....+.++.++++.|+
T Consensus       327 I~lLhakT~eli~s~Ki---eG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~-G~v~gts~~~S~ng~yl  402 (514)
T KOG2055|consen  327 IHLLHAKTKELITSFKI---EGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDD-GSVHGTSLCISLNGSYL  402 (514)
T ss_pred             EEeehhhhhhhhheeee---ccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeec-CccceeeeeecCCCceE
Confidence            99999999999999887   678999999999999999999999999999999888888643 33445677888899987


Q ss_pred             EEeeCCCCeEEEEEcCCc------ceeEEe--------------------------------------------e--cCC
Q 040370          169 LSIDEPSNEIVIWDALTA------EKVAKW--------------------------------------------S--SNH  196 (228)
Q Consensus       169 ~~~~~~d~~i~i~d~~~~------~~~~~~--------------------------------------------~--~~~  196 (228)
                      ++ |++.|.|.|||..+.      +++..+                                            +  ...
T Consensus       403 A~-GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~  481 (514)
T KOG2055|consen  403 AT-GSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTK  481 (514)
T ss_pred             Ee-ccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCc
Confidence            77 455799999996431      111000                                            0  122


Q ss_pred             CCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370          197 IGAPRWIEHSPAEAAFITCGTDRSVRFWKEI  227 (228)
Q Consensus       197 ~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~  227 (228)
                      -+.|+|++|+|.+.+||.|..+|++.+|.+-
T Consensus       482 vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~  512 (514)
T KOG2055|consen  482 VGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH  512 (514)
T ss_pred             ccceEEEEecCCCceEEeecCCCceeeEeec
Confidence            3468999999999999999999999999873

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.93  E-value=2e-22  Score=147.18  Aligned_cols=213  Identities=14%  Similarity=0.146  Sum_probs=153.0

Q ss_pred             CCcCCccccceeEEEeecCcceEEEEEeCCCCEE-EEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCe
Q 040370            1 FFDFSKATAKRAFRVIQDTHNVRSVSFHPSGDFL-LAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGM   79 (228)
Q Consensus         1 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~   79 (228)
                      +||....+  . .....+...+.+++|+|+++.+ ++++.++.|++||..+++....+..     ...+..++|+|+++.
T Consensus        15 ~~d~~t~~--~-~~~~~~~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~-----~~~~~~~~~~~~g~~   86 (300)
T TIGR03866        15 VIDTATLE--V-TRTFPVGQRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPS-----GPDPELFALHPNGKI   86 (300)
T ss_pred             EEECCCCc--e-EEEEECCCCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccC-----CCCccEEEECCCCCE
Confidence            36665433  2 2223334457889999999876 5677889999999998876554432     223567899999987


Q ss_pred             EEEE-ecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCC-eEEEEEccCCeeEEEEecceeeeeee
Q 040370           80 YVTA-SKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDS-TVKLWEVSSGRLVKQYLGATHTQLRF  157 (228)
Q Consensus        80 l~~~-~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~-~i~~wd~~~~~~~~~~~~~~~~~~~~  157 (228)
                      ++++ +.++.+++||+++++.+..+..   ...+.+++|+|+++++++++.++ .+.+||.++++.......   .....
T Consensus        87 l~~~~~~~~~l~~~d~~~~~~~~~~~~---~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~---~~~~~  160 (300)
T TIGR03866        87 LYIANEDDNLVTVIDIETRKVLAEIPV---GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLV---DQRPR  160 (300)
T ss_pred             EEEEcCCCCeEEEEECCCCeEEeEeeC---CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEc---CCCcc
Confidence            7654 5689999999998877766653   23467899999999999888765 567889988776654432   22345


Q ss_pred             EEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecC----CCC--CcEEEEeCCCCcEEEE-ecCCCCEEEeeec
Q 040370          158 QAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSN----HIG--APRWIEHSPAEAAFIT-CGTDRSVRFWKEI  227 (228)
Q Consensus       158 ~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~----~~~--~v~~~~~~~~~~~l~s-~~~dg~i~vwd~~  227 (228)
                      .+.|+|++..+++++..++.|++||+++++....+...    +..  ....++|+|++++++. .+.++.+.+||+.
T Consensus       161 ~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~  237 (300)
T TIGR03866       161 FAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAK  237 (300)
T ss_pred             EEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECC
Confidence            68899999998877766899999999998876655211    111  2356889999997544 4567789999863

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.93  E-value=2.1e-24  Score=160.55  Aligned_cols=225  Identities=14%  Similarity=0.190  Sum_probs=164.8

Q ss_pred             CCcCCccccceeEEEeecCcceEEEEEeC-CCCEEEEecCCCeEEEEEcccceEE--------------e----------
Q 040370            1 FFDFSKATAKRAFRVIQDTHNVRSVSFHP-SGDFLLAGTDHPIAHLYDVNTFQCY--------------L----------   55 (228)
Q Consensus         1 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~vw~~~~~~~~--------------~----------   55 (228)
                      +||++..........++|...|.+++|.| +...|++|+.||.|.|||+.-...-              .          
T Consensus       126 ~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~k  205 (720)
T KOG0321|consen  126 PWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKK  205 (720)
T ss_pred             eeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhc
Confidence            48888666655556789999999999999 5677889999999999998642200              0          


Q ss_pred             eeccceeeeccceee---EEeCCCCCeEEEEec-CCeEEEEeCCCCceeeE------Eecccc---cceeEEEEECCCCC
Q 040370           56 SANVPEISVNGAINQ---VRYSSTGGMYVTASK-DGAIRLWDGVSANCVRS------IVGAHG---TAEATSANFTKDQR  122 (228)
Q Consensus        56 ~~~~~~~~~~~~i~~---~~~~~~~~~l~~~~~-dg~v~iwd~~~~~~~~~------~~~~~~---~~~i~~~~~~~~~~  122 (228)
                      ....... +...|.+   +.+..|...|++++. |+.|+|||++.......      ...+.+   ...+.++.....|.
T Consensus       206 r~~k~kA-~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt  284 (720)
T KOG0321|consen  206 RIRKWKA-ASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGT  284 (720)
T ss_pred             ccccccc-ccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCC
Confidence            0000001 1233333   445557888999887 99999999987543222      111111   34567888888889


Q ss_pred             EEEEeeCCCeEEEEEccCCe--eEEEEecceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCc
Q 040370          123 FVLSCGKDSTVKLWEVSSGR--LVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAP  200 (228)
Q Consensus       123 ~l~~~~~d~~i~~wd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v  200 (228)
                      +|++.+.|+.|++|++....  ++..+.++........-..+|++.+++++.. |...++|.+.+.+.......+|...|
T Consensus       285 ~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSs-d~~ayiw~vs~~e~~~~~l~Ght~eV  363 (720)
T KOG0321|consen  285 YLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSS-DEQAYIWVVSSPEAPPALLLGHTREV  363 (720)
T ss_pred             eEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCC-CcceeeeeecCccCChhhhhCcceEE
Confidence            99988899999999998643  3444444444445556678899999998766 89999999999888777778999999


Q ss_pred             EEEEeCCC-CcEEEEecCCCCEEEeeec
Q 040370          201 RWIEHSPA-EAAFITCGTDRSVRFWKEI  227 (228)
Q Consensus       201 ~~~~~~~~-~~~l~s~~~dg~i~vwd~~  227 (228)
                      ++++|.|. -.-++|+++|.++++|++.
T Consensus       364 t~V~w~pS~~t~v~TcSdD~~~kiW~l~  391 (720)
T KOG0321|consen  364 TTVRWLPSATTPVATCSDDFRVKIWRLS  391 (720)
T ss_pred             EEEeeccccCCCceeeccCcceEEEecc
Confidence            99999983 3457888999999999973

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=4.9e-24  Score=146.72  Aligned_cols=221  Identities=14%  Similarity=0.229  Sum_probs=168.3

Q ss_pred             CCcCCccccceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeecccee------e-----------
Q 040370            1 FFDFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEI------S-----------   63 (228)
Q Consensus         1 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~------~-----------   63 (228)
                      |||+.+....+.  +.+|..+|++++||++|+.|++++.|..|.+||+..|.+...+.....      |           
T Consensus        49 I~D~~T~~iar~--lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf~spv~~~q~hp~k~n~~va~~  126 (405)
T KOG1273|consen   49 IYDFDTFRIARM--LSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRFDSPVWGAQWHPRKRNKCVATI  126 (405)
T ss_pred             EEEccccchhhh--hhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEccCccceeeeccccCCeEEEEE
Confidence            578776554443  347999999999999999999999999999999998876554432110      0           


Q ss_pred             -------------------------eccceeeEEeCCCCCeEEEEecCCeEEEEeCCCCceeeEEecccccceeEEEEEC
Q 040370           64 -------------------------VNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFT  118 (228)
Q Consensus        64 -------------------------~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~  118 (228)
                                               .+....+..|.+.|+++++|...|.+.++|..+.+++..+.... ...|..+.++
T Consensus       127 ~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits-~~~IK~I~~s  205 (405)
T KOG1273|consen  127 MEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITS-VQAIKQIIVS  205 (405)
T ss_pred             ecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeech-heeeeEEEEe
Confidence                                     01111223466778899999999999999999998888776642 4688999999


Q ss_pred             CCCCEEEEeeCCCeEEEEEccCC-------e--eEEEEecceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCccee
Q 040370          119 KDQRFVLSCGKDSTVKLWEVSSG-------R--LVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKV  189 (228)
Q Consensus       119 ~~~~~l~~~~~d~~i~~wd~~~~-------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~  189 (228)
                      ..|+.|+.-+.|+.||.|+++.-       +  +.++++.--....-.+++|+.+|.|++++...-..++||.-..|..+
T Consensus       206 ~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLV  285 (405)
T KOG1273|consen  206 RKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLV  285 (405)
T ss_pred             ccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCccee
Confidence            99999999999999999998631       1  11122111122334578899999999998877789999999999988


Q ss_pred             EEeecCCC-CCcEEEEeCCCCcEEEEecCCCCEEEeee
Q 040370          190 AKWSSNHI-GAPRWIEHSPAEAAFITCGTDRSVRFWKE  226 (228)
Q Consensus       190 ~~~~~~~~-~~v~~~~~~~~~~~l~s~~~dg~i~vwd~  226 (228)
                      ..+ .+.. .....+.|+|-...+++- ..|.|++|..
T Consensus       286 KIL-hG~kgE~l~DV~whp~rp~i~si-~sg~v~iw~~  321 (405)
T KOG1273|consen  286 KIL-HGTKGEELLDVNWHPVRPIIASI-ASGVVYIWAV  321 (405)
T ss_pred             eee-cCCchhheeecccccceeeeeec-cCCceEEEEe
Confidence            887 4444 578889999988888887 7889999975

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.93  E-value=5.1e-24  Score=159.79  Aligned_cols=195  Identities=18%  Similarity=0.324  Sum_probs=163.1

Q ss_pred             EEeecCcceEE-EEEeC-CCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEE
Q 040370           14 RVIQDTHNVRS-VSFHP-SGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRL   91 (228)
Q Consensus        14 ~~~~~~~~v~~-~~~~~-~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i   91 (228)
                      .+.+|.+-|.. ++|-+ ++-.+++|+.|.+|.+|......+...+.   +| ++.|.++....++. +++||.|.++++
T Consensus        52 ~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~Lk---gH-~snVC~ls~~~~~~-~iSgSWD~Takv  126 (745)
T KOG0301|consen   52 AFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLK---GH-KSNVCSLSIGEDGT-LISGSWDSTAKV  126 (745)
T ss_pred             ecccCcceeeccceeccccCcceEeecccceEEEEecCCCCchhhhh---cc-ccceeeeecCCcCc-eEecccccceEE
Confidence            34456676766 88875 55679999999999999999888766655   34 88899999877776 999999999999


Q ss_pred             EeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEe
Q 040370           92 WDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSI  171 (228)
Q Consensus        92 wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (228)
                      |..  +++...+.+|  ...|.++..-|++ .++||+.|++|++|.-  ++.++++.+  |...+..+++-+++.++-+ 
T Consensus       127 W~~--~~l~~~l~gH--~asVWAv~~l~e~-~~vTgsaDKtIklWk~--~~~l~tf~g--HtD~VRgL~vl~~~~flSc-  196 (745)
T KOG0301|consen  127 WRI--GELVYSLQGH--TASVWAVASLPEN-TYVTGSADKTIKLWKG--GTLLKTFSG--HTDCVRGLAVLDDSHFLSC-  196 (745)
T ss_pred             ecc--hhhhcccCCc--chheeeeeecCCC-cEEeccCcceeeeccC--Cchhhhhcc--chhheeeeEEecCCCeEee-
Confidence            975  4555556666  8899999999887 7899999999999975  788899988  7888888888887765543 


Q ss_pred             eCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeee
Q 040370          172 DEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKE  226 (228)
Q Consensus       172 ~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~  226 (228)
                       ++||.|++|++ +++.+.+. .+|..-+.++...+++..++++|+|++++||+.
T Consensus       197 -sNDg~Ir~w~~-~ge~l~~~-~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~  248 (745)
T KOG0301|consen  197 -SNDGSIRLWDL-DGEVLLEM-HGHTNFVYSISMALSDGLIVSTGEDRTLRIWKK  248 (745)
T ss_pred             -cCCceEEEEec-cCceeeee-eccceEEEEEEecCCCCeEEEecCCceEEEeec
Confidence             45899999998 78888887 799999999998888899999999999999984

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=1.2e-23  Score=145.09  Aligned_cols=198  Identities=14%  Similarity=0.240  Sum_probs=156.4

Q ss_pred             cCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCC-
Q 040370           18 DTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVS-   96 (228)
Q Consensus        18 ~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~-   96 (228)
                      |.-.+..+-...++.+|++++.|..|.+|+++ |+.+......    ...-+..+.+|+|+++++++-.-.|++|.+-- 
T Consensus       186 h~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtn----q~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~  260 (420)
T KOG2096|consen  186 HQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTN----QSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFT  260 (420)
T ss_pred             cccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeeccc----cccccceeeCCCCcEEEEecCCCCceEEEEEec
Confidence            55666777777788999999999999999998 7777666554    34456788999999999999999999998632 


Q ss_pred             --C-----ceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccC----C---eeEEEE--ecceeeeeeeEEE
Q 040370           97 --A-----NCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSS----G---RLVKQY--LGATHTQLRFQAV  160 (228)
Q Consensus        97 --~-----~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~----~---~~~~~~--~~~~~~~~~~~~~  160 (228)
                        |     .....+++|  ...|..++|+++...+++.+.||++++||+.-    +   +.+...  ..+........+.
T Consensus       261 kdG~fqev~rvf~LkGH--~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~  338 (420)
T KOG2096|consen  261 KDGTFQEVKRVFSLKGH--QSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLE  338 (420)
T ss_pred             cCcchhhhhhhheeccc--hhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEE
Confidence              2     223444554  88999999999999999999999999999852    1   122222  1122334445888


Q ss_pred             ECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEee
Q 040370          161 FNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWK  225 (228)
Q Consensus       161 ~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd  225 (228)
                      .+|++..++++.+  ..+++|..++++....+...|...|.+++|+++|++++|+| |..+++..
T Consensus       339 lsP~g~~lA~s~g--s~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcG-dr~vrv~~  400 (420)
T KOG2096|consen  339 LSPSGDSLAVSFG--SDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCG-DRYVRVIR  400 (420)
T ss_pred             eCCCCcEEEeecC--CceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeec-ceeeeeec
Confidence            9999999988765  78999999999999888889999999999999999999987 56677653

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=2.3e-22  Score=150.59  Aligned_cols=203  Identities=11%  Similarity=0.154  Sum_probs=165.5

Q ss_pred             cCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCCC
Q 040370           18 DTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSA   97 (228)
Q Consensus        18 ~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~   97 (228)
                      -+.+|.++||+.+.+.||.+-.+|.|.+|++..+-.....-  .++....|.+++|++ +..|++.+.+|.|.-||+.++
T Consensus        24 ~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi--~g~~drsIE~L~W~e-~~RLFS~g~sg~i~EwDl~~l  100 (691)
T KOG2048|consen   24 KPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVI--HGPEDRSIESLAWAE-GGRLFSSGLSGSITEWDLHTL  100 (691)
T ss_pred             eccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEE--ecCCCCceeeEEEcc-CCeEEeecCCceEEEEecccC
Confidence            46899999999999999999999999999999865433221  223378899999995 456888999999999999999


Q ss_pred             ceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCCe
Q 040370           98 NCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNE  177 (228)
Q Consensus        98 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  177 (228)
                      +....+...  .+.|++++.+|.+..++.|++||.++.++...++.............+.++.|+|++..++.++. ||.
T Consensus       101 k~~~~~d~~--gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~-Dg~  177 (691)
T KOG2048|consen  101 KQKYNIDSN--GGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSI-DGV  177 (691)
T ss_pred             ceeEEecCC--CcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEeccc-Cce
Confidence            988888765  78999999999999999999999888888887777665555556788999999999998888655 899


Q ss_pred             EEEEEcCCcceeEEee-------cCCCCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370          178 IVIWDALTAEKVAKWS-------SNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEI  227 (228)
Q Consensus       178 i~i~d~~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~  227 (228)
                      |++||..++..+....       .....-|.++.|-.+ ..|++|..-|.|++||..
T Consensus       178 Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd-~tI~sgDS~G~V~FWd~~  233 (691)
T KOG2048|consen  178 IRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD-STIASGDSAGTVTFWDSI  233 (691)
T ss_pred             EEEEEcCCCceEEEeeecccccccCCceEEEEEEEeec-CcEEEecCCceEEEEccc
Confidence            9999999998877221       112334677777654 469999999999999953

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.92  E-value=2.8e-22  Score=153.42  Aligned_cols=220  Identities=15%  Similarity=0.241  Sum_probs=174.8

Q ss_pred             CCcCCccccceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCC-e
Q 040370            1 FFDFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGG-M   79 (228)
Q Consensus         1 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~   79 (228)
                      ||++.  +.+.++++.++...|+++.=+|--+.+|.|..+|+|.+++++.++.+..++..    .++|+.+.|..||+ .
T Consensus       186 l~Nvr--t~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d----~g~VtslSFrtDG~p~  259 (910)
T KOG1539|consen  186 LWNVR--TGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQD----WGRVTSLSFRTDGNPL  259 (910)
T ss_pred             EEEec--cCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEcc----ccceeEEEeccCCCee
Confidence            45555  44667777788899999999999999999999999999999999988877653    48899999999887 5


Q ss_pred             EEEEecCCeEEEEeCCCCceeeEEeccc----------------------------------------------------
Q 040370           80 YVTASKDGAIRLWDGVSANCVRSIVGAH----------------------------------------------------  107 (228)
Q Consensus        80 l~~~~~dg~v~iwd~~~~~~~~~~~~~~----------------------------------------------------  107 (228)
                      +++|+..|.+.+||++..+....+...|                                                    
T Consensus       260 las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~  339 (910)
T KOG1539|consen  260 LASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSC  339 (910)
T ss_pred             EEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchh
Confidence            6677777999999976543322221000                                                    


Q ss_pred             --------------------------------------------------------------------------------
Q 040370          108 --------------------------------------------------------------------------------  107 (228)
Q Consensus       108 --------------------------------------------------------------------------------  107 (228)
                                                                                                      
T Consensus       340 irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~  419 (910)
T KOG1539|consen  340 IRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHK  419 (910)
T ss_pred             eeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEec
Confidence                                                                                            


Q ss_pred             ---------------------------ccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEe-cceeeeeeeEE
Q 040370          108 ---------------------------GTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYL-GATHTQLRFQA  159 (228)
Q Consensus       108 ---------------------------~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~-~~~~~~~~~~~  159 (228)
                                                 ....+++++.++.|++.+.|...|.|-+|++.+|-....+. ...|...+..+
T Consensus       420 ~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gl  499 (910)
T KOG1539|consen  420 GKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGL  499 (910)
T ss_pred             CcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEE
Confidence                                       01456777888888888899999999999999887777762 33478888899


Q ss_pred             EECCCCcEEEEeeCCCCeEEEEEcCCcceeEEe----------------------------------------ecCCCCC
Q 040370          160 VFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKW----------------------------------------SSNHIGA  199 (228)
Q Consensus       160 ~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~----------------------------------------~~~~~~~  199 (228)
                      +...-++.+++++. +|.+.+||.++......+                                        ..+|.+.
T Consensus       500 a~D~~n~~~vsa~~-~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nr  578 (910)
T KOG1539|consen  500 AVDGTNRLLVSAGA-DGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNR  578 (910)
T ss_pred             EecCCCceEEEccC-cceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccc
Confidence            98888888888777 699999998765422221                                        1479999


Q ss_pred             cEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370          200 PRWIEHSPAEAAFITCGTDRSVRFWKEI  227 (228)
Q Consensus       200 v~~~~~~~~~~~l~s~~~dg~i~vwd~~  227 (228)
                      |++++|||||++|++++.|++|++||+.
T Consensus       579 itd~~FS~DgrWlisasmD~tIr~wDlp  606 (910)
T KOG1539|consen  579 ITDMTFSPDGRWLISASMDSTIRTWDLP  606 (910)
T ss_pred             eeeeEeCCCCcEEEEeecCCcEEEEecc
Confidence            9999999999999999999999999985

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.92  E-value=6.6e-25  Score=172.49  Aligned_cols=211  Identities=15%  Similarity=0.265  Sum_probs=168.3

Q ss_pred             eEEEeecCcceEEEEEeC-CCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCC-CCeEEEEecCCeE
Q 040370           12 AFRVIQDTHNVRSVSFHP-SGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSST-GGMYVTASKDGAI   89 (228)
Q Consensus        12 ~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~v   89 (228)
                      +.+...|++.|..+.|++ .++.||+|+.||.|.|||+.+.+.-....  .....+.|.+++|+.. ...|++++.+|.+
T Consensus       109 la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~--~~~~~~eI~~lsWNrkvqhILAS~s~sg~~  186 (1049)
T KOG0307|consen  109 LATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPG--SQAPPSEIKCLSWNRKVSHILASGSPSGRA  186 (1049)
T ss_pred             HhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCC--CCCCcccceEeccchhhhHHhhccCCCCCc
Confidence            344557999999999999 55699999999999999998854322221  2212678999999974 5578899999999


Q ss_pred             EEEeCCCCceeeEEecccccceeEEEEECCCC-CEEEEeeCCC---eEEEEEccCCe-eEEEEecceeeeeeeEEEECCC
Q 040370           90 RLWDGVSANCVRSIVGAHGTAEATSANFTKDQ-RFVLSCGKDS---TVKLWEVSSGR-LVKQYLGATHTQLRFQAVFNDT  164 (228)
Q Consensus        90 ~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~---~i~~wd~~~~~-~~~~~~~~~~~~~~~~~~~~~~  164 (228)
                      .|||++..+.+..+..+.....+..++|+|+. ..+++++.|.   .|.+||+|... .++.+++  |...+.++.|++.
T Consensus       187 ~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~--H~~GilslsWc~~  264 (1049)
T KOG0307|consen  187 VIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEG--HQRGILSLSWCPQ  264 (1049)
T ss_pred             eeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcc--cccceeeeccCCC
Confidence            99999999888888776555668899999965 4566666553   59999998644 4555555  7888999999999


Q ss_pred             CcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCc-EEEEecCCCCEEEeeec
Q 040370          165 EEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEA-AFITCGTDRSVRFWKEI  227 (228)
Q Consensus       165 ~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~dg~i~vwd~~  227 (228)
                      +..++.+++.|+.|.+|+.++++.+..+ ......+..+.|+|... .++.++-||.|.|+.+.
T Consensus       265 D~~lllSsgkD~~ii~wN~~tgEvl~~~-p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~  327 (1049)
T KOG0307|consen  265 DPRLLLSSGKDNRIICWNPNTGEVLGEL-PAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQ  327 (1049)
T ss_pred             CchhhhcccCCCCeeEecCCCceEeeec-CCCCcceeeeeecCCCcchhhhheeccceeeeeee
Confidence            8655555666999999999999999999 45678899999999554 88888999999999864

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.92  E-value=1.3e-22  Score=139.62  Aligned_cols=192  Identities=17%  Similarity=0.279  Sum_probs=140.5

Q ss_pred             CcCCccccceeEEEeecCcceEEEEEeCCCC--EEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCe
Q 040370            2 FDFSKATAKRAFRVIQDTHNVRSVSFHPSGD--FLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGM   79 (228)
Q Consensus         2 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~   79 (228)
                      ||..  ..++.-.+..|.+.|+++.|.+...  .|++|+.||.|.+|+....+++..++.+    .+.|+.++.+|.+++
T Consensus        68 YDm~--k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H----~~~Vt~lsiHPS~KL  141 (362)
T KOG0294|consen   68 YDMR--KRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAH----KGQVTDLSIHPSGKL  141 (362)
T ss_pred             Eecc--chhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeeccc----ccccceeEecCCCce
Confidence            4444  3345556678999999999998654  8999999999999999998877776643    677999999999999


Q ss_pred             EEEEecCCeEEEEeCCCCceeeEEeccc-------------------------------------ccceeEEEEECCCCC
Q 040370           80 YVTASKDGAIRLWDGVSANCVRSIVGAH-------------------------------------GTAEATSANFTKDQR  122 (228)
Q Consensus        80 l~~~~~dg~v~iwd~~~~~~~~~~~~~~-------------------------------------~~~~i~~~~~~~~~~  122 (228)
                      .++.+.|+.+++||+-+|+.-......+                                     .+..+.++.|. ++.
T Consensus       142 ALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~~~~r~l~~~~l-~~~  220 (362)
T KOG0294|consen  142 ALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGRNKIDIYQLDNASVFREIENPKRILCATFL-DGS  220 (362)
T ss_pred             EEEEcCCceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEEEeccEEEEEecccHhHhhhhhccccceeeeec-CCc
Confidence            9999999999999988776443332211                                     01223444443 456


Q ss_pred             EEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEE--EECCCCcEEEEeeCCCCeEEEEEcCCc-----ceeEEeecC
Q 040370          123 FVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQA--VFNDTEEFVLSIDEPSNEIVIWDALTA-----EKVAKWSSN  195 (228)
Q Consensus       123 ~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~d~~i~i~d~~~~-----~~~~~~~~~  195 (228)
                      +|++|+.|+.|++||..+..+...+..  |...+-.+  .-+|.+.++++.++ ||.|++||++..     +.+...  .
T Consensus       221 ~L~vG~d~~~i~~~D~ds~~~~~~~~A--H~~RVK~i~~~~~~~~~~lvTaSS-DG~I~vWd~~~~~k~~~~~l~e~--n  295 (362)
T KOG0294|consen  221 ELLVGGDNEWISLKDTDSDTPLTEFLA--HENRVKDIASYTNPEHEYLVTASS-DGFIKVWDIDMETKKRPTLLAEL--N  295 (362)
T ss_pred             eEEEecCCceEEEeccCCCccceeeec--chhheeeeEEEecCCceEEEEecc-CceEEEEEccccccCCcceeEEe--e
Confidence            788899999999999988888888877  44444444  45677777777666 899999999866     333333  2


Q ss_pred             CCCCcEEEEe
Q 040370          196 HIGAPRWIEH  205 (228)
Q Consensus       196 ~~~~v~~~~~  205 (228)
                      -...++|+..
T Consensus       296 ~~~RltCl~~  305 (362)
T KOG0294|consen  296 TNVRLTCLRV  305 (362)
T ss_pred             cCCccceeee
Confidence            2455666544

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.92  E-value=8.4e-24  Score=153.61  Aligned_cols=200  Identities=12%  Similarity=0.127  Sum_probs=165.7

Q ss_pred             ceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCCCcee
Q 040370           21 NVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANCV  100 (228)
Q Consensus        21 ~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~  100 (228)
                      .-.|++......++++|+..+.|+|||++...+...+   ..| ...|+++.++-...+||+++..|.|.|..+.++...
T Consensus        81 ~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~l---kdh-~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~t  156 (673)
T KOG4378|consen   81 NAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFL---KDH-QSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKT  156 (673)
T ss_pred             hHHHHhhhhcceeeeccCcCceeeehhhHHHHHhhhc---cCC-cceeEEEEecCCcceeEEeccCCcEEEEecccCccc
Confidence            4455555556689999999999999999964443333   334 789999999999999999999999999999998887


Q ss_pred             eEEecccccceeEEEEECCCCC-EEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCCeEE
Q 040370          101 RSIVGAHGTAEATSANFTKDQR-FVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIV  179 (228)
Q Consensus       101 ~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~  179 (228)
                      ..+.... ...+.-+.|+|..+ +|.+++.+|.|.+||+....+...+. ..|..+...++|+|..+.++++-+.|..|.
T Consensus       157 t~f~~~s-gqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~-~~HsAP~~gicfspsne~l~vsVG~Dkki~  234 (673)
T KOG4378|consen  157 TTFTIDS-GQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHAS-EAHSAPCRGICFSPSNEALLVSVGYDKKIN  234 (673)
T ss_pred             cceecCC-CCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchh-hhccCCcCcceecCCccceEEEecccceEE
Confidence            7776543 55677899999665 56788999999999998776666554 347888899999999998888888899999


Q ss_pred             EEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeeecC
Q 040370          180 IWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEIL  228 (228)
Q Consensus       180 i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~l  228 (228)
                      +||.+.......+  ....+...++|.++|.+|+.|...|.|..||+++
T Consensus       235 ~yD~~s~~s~~~l--~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~  281 (673)
T KOG4378|consen  235 IYDIRSQASTDRL--TYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRS  281 (673)
T ss_pred             Eeeccccccccee--eecCCcceeeecCCceEEEeecCCceEEEEeccc
Confidence            9999987777776  4556899999999999999999999999999875

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.92  E-value=2.6e-23  Score=151.11  Aligned_cols=198  Identities=16%  Similarity=0.279  Sum_probs=162.7

Q ss_pred             CCcCCccccceeE-EEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCC-
Q 040370            1 FFDFSKATAKRAF-RVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGG-   78 (228)
Q Consensus         1 iwd~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-   78 (228)
                      |||+.   .+.+. .+.+|...|+++.++-...+||+++..|.|.|..+.++.....+....   ...|.-+.|+|..+ 
T Consensus       105 iwdl~---~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~s---gqsvRll~ys~skr~  178 (673)
T KOG4378|consen  105 IWDLR---AKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDS---GQSVRLLRYSPSKRF  178 (673)
T ss_pred             ehhhH---HHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCC---CCeEEEeecccccce
Confidence            68887   23333 344799999999999999999999999999999999887655554432   45677899999766 


Q ss_pred             eEEEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECC-CCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeee
Q 040370           79 MYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTK-DQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRF  157 (228)
Q Consensus        79 ~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~  157 (228)
                      +|.+++.+|.|.+||+....++..+...| ..+...++|+| +..+|++.+.|..|.+||.+..+....+.   ...+..
T Consensus       179 lL~~asd~G~VtlwDv~g~sp~~~~~~~H-sAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~---y~~Pls  254 (673)
T KOG4378|consen  179 LLSIASDKGAVTLWDVQGMSPIFHASEAH-SAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLT---YSHPLS  254 (673)
T ss_pred             eeEeeccCCeEEEEeccCCCcccchhhhc-cCCcCcceecCCccceEEEecccceEEEeecccccccceee---ecCCcc
Confidence            56688999999999998888877776654 88999999999 55678899999999999999777666664   345678


Q ss_pred             EEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCC
Q 040370          158 QAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAE  209 (228)
Q Consensus       158 ~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~  209 (228)
                      .++|.++|.+++++.+ .|.|..||+|..+.+......|...|++++|-|..
T Consensus       255 tvaf~~~G~~L~aG~s-~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~  305 (673)
T KOG4378|consen  255 TVAFSECGTYLCAGNS-KGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP  305 (673)
T ss_pred             eeeecCCceEEEeecC-CceEEEEecccCCCCceEeeecccceeEEEeeecc
Confidence            8999999999998777 59999999998877777668999999999998765

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.92  E-value=4.5e-23  Score=140.90  Aligned_cols=163  Identities=13%  Similarity=0.273  Sum_probs=136.5

Q ss_pred             ecCcceEEEEEeC-CCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCC---CCeEEEEecCCeEEEE
Q 040370           17 QDTHNVRSVSFHP-SGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSST---GGMYVTASKDGAIRLW   92 (228)
Q Consensus        17 ~~~~~v~~~~~~~-~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~l~~~~~dg~v~iw   92 (228)
                      +|...|.++.|-| |...+.+++-|.+++|||..+.+....+..     .+.|.+-+++|-   ..++|+|..|-.|++-
T Consensus        99 ~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~m-----e~~VYshamSp~a~sHcLiA~gtr~~~VrLC  173 (397)
T KOG4283|consen   99 GHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFKM-----EGKVYSHAMSPMAMSHCLIAAGTRDVQVRLC  173 (397)
T ss_pred             cceeeeeeeEEeeecCceeecccccceEEEeecccceeeEEeec-----CceeehhhcChhhhcceEEEEecCCCcEEEE
Confidence            6788999999999 778899999999999999999887777665     567888889883   4478888899999999


Q ss_pred             eCCCCceeeEEecccccceeEEEEECCCCCE-EEEeeCCCeEEEEEccCC-eeEEEEe------------cceeeeeeeE
Q 040370           93 DGVSANCVRSIVGAHGTAEATSANFTKDQRF-VLSCGKDSTVKLWEVSSG-RLVKQYL------------GATHTQLRFQ  158 (228)
Q Consensus        93 d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-l~~~~~d~~i~~wd~~~~-~~~~~~~------------~~~~~~~~~~  158 (228)
                      |+.+|.....+.+|  ...|.++.|+|...+ |++|+.||.|++||++.. .+...+.            ...|...+..
T Consensus       174 Di~SGs~sH~LsGH--r~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvng  251 (397)
T KOG4283|consen  174 DIASGSFSHTLSGH--RDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNG  251 (397)
T ss_pred             eccCCcceeeeccc--cCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeee
Confidence            99999999999987  789999999997765 789999999999999854 2222221            2346677889


Q ss_pred             EEECCCCcEEEEeeCCCCeEEEEEcCCcc
Q 040370          159 AVFNDTEEFVLSIDEPSNEIVIWDALTAE  187 (228)
Q Consensus       159 ~~~~~~~~~~~~~~~~d~~i~i~d~~~~~  187 (228)
                      ++|..++.++++.+. |..+++|+..+|+
T Consensus       252 la~tSd~~~l~~~gt-d~r~r~wn~~~G~  279 (397)
T KOG4283|consen  252 LAWTSDARYLASCGT-DDRIRVWNMESGR  279 (397)
T ss_pred             eeecccchhhhhccC-ccceEEeecccCc
Confidence            999999999999877 7899999987764

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.91  E-value=1.9e-23  Score=149.94  Aligned_cols=221  Identities=14%  Similarity=0.179  Sum_probs=166.7

Q ss_pred             CCcCC--ccccceeEEEeecCcceEEEEEeC-CCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCC
Q 040370            1 FFDFS--KATAKRAFRVIQDTHNVRSVSFHP-SGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTG   77 (228)
Q Consensus         1 iwd~~--~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~   77 (228)
                      +||+.  .+.....+.+..|..+|.++.|+| +...+++.+.||+|++-|++.+.....+.... . ...+..+.|+.+.
T Consensus       214 ~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~-d-~~~fs~~d~~~e~  291 (498)
T KOG4328|consen  214 LWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDT-D-NIWFSSLDFSAES  291 (498)
T ss_pred             EEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeeeeecchhhHHHhhcCc-c-ceeeeeccccCCC
Confidence            58885  344556777778999999999999 66789999999999999999865433332211 1 4567888898887


Q ss_pred             CeEEEEecCCeEEEEeCCCCce-eeEEecccccceeEEEEECC-CCCEEEEeeCCCeEEEEEccCCeeEE--EEecceee
Q 040370           78 GMYVTASKDGAIRLWDGVSANC-VRSIVGAHGTAEATSANFTK-DQRFVLSCGKDSTVKLWEVSSGRLVK--QYLGATHT  153 (228)
Q Consensus        78 ~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~--~~~~~~~~  153 (228)
                      ..++.+..=|.+.+||.+++.. ...+..|  ...|.+++++| ...+|+|++.|++.+|||+|......  .+..-.|.
T Consensus       292 ~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh--~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~Hr  369 (498)
T KOG4328|consen  292 RSVLFGDNVGNFNVIDLRTDGSEYENLRLH--KKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHR  369 (498)
T ss_pred             ccEEEeecccceEEEEeecCCccchhhhhh--hcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceeccccc
Confidence            7788888778999999998765 4444444  55999999999 55679999999999999999754333  24444478


Q ss_pred             eeeeEEEECCCCcEEEEeeCCCCeEEEEEcC----CcceeEEeecCCCC----CcEEEEeCCCCcEEEEecCCCCEEEee
Q 040370          154 QLRFQAVFNDTEEFVLSIDEPSNEIVIWDAL----TAEKVAKWSSNHIG----APRWIEHSPAEAAFITCGTDRSVRFWK  225 (228)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~----~~~~~~~~~~~~~~----~v~~~~~~~~~~~l~s~~~dg~i~vwd  225 (228)
                      ..+.++.|+|.+..+++++. |..|+|||..    ...+...+...+..    ......|.|+..+++.|-.-..|-|+|
T Consensus       370 rsV~sAyFSPs~gtl~TT~~-D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~  448 (498)
T KOG4328|consen  370 RSVNSAYFSPSGGTLLTTCQ-DNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFD  448 (498)
T ss_pred             ceeeeeEEcCCCCceEeecc-CCceEEeecccccccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEc
Confidence            88999999999999887766 8999999983    33444444211111    244568999999999998888888887


Q ss_pred             e
Q 040370          226 E  226 (228)
Q Consensus       226 ~  226 (228)
                      -
T Consensus       449 ~  449 (498)
T KOG4328|consen  449 G  449 (498)
T ss_pred             C
Confidence            4

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=2.7e-23  Score=149.39  Aligned_cols=200  Identities=13%  Similarity=0.210  Sum_probs=158.1

Q ss_pred             CCcCCccccceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccce------EEeeeccceeeeccceeeEEeC
Q 040370            1 FFDFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQ------CYLSANVPEISVNGAINQVRYS   74 (228)
Q Consensus         1 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~------~~~~~~~~~~~~~~~i~~~~~~   74 (228)
                      +|.++++.....+  ..|-..|+|+.|+-|+.+|++|+.||.|.+|.+.+--      ....+... .+|.-+|+++...
T Consensus       107 lWelssG~LL~v~--~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f-~~HtlsITDl~ig  183 (476)
T KOG0646|consen  107 LWELSSGILLNVL--SAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIF-SDHTLSITDLQIG  183 (476)
T ss_pred             EEEeccccHHHHH--HhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeee-ccCcceeEEEEec
Confidence            3556654443333  5799999999999999999999999999999875421      11112222 2347889999887


Q ss_pred             CC--CCeEEEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCC-----------
Q 040370           75 ST--GGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSG-----------  141 (228)
Q Consensus        75 ~~--~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~-----------  141 (228)
                      +.  ..+++|+|.|.++++||+..+..+..+..   +..+.+++.+|.+..++.|+.+|.|.+.++.+.           
T Consensus       184 ~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~f---p~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~  260 (476)
T KOG0646|consen  184 SGGTNARLYTASEDRTIKLWDLSLGVLLLTITF---PSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKG  260 (476)
T ss_pred             CCCccceEEEecCCceEEEEEeccceeeEEEec---CCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccc
Confidence            64  45899999999999999999999988877   678999999999999999999999999887542           


Q ss_pred             -----eeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCC
Q 040370          142 -----RLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPA  208 (228)
Q Consensus       142 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~  208 (228)
                           ..+..+.++.....+++++.+-++..+++++. ||.++|||+.+.+.+.++ ....++|+.+.+.|-
T Consensus       261 ~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~-dg~VcvWdi~S~Q~iRtl-~~~kgpVtnL~i~~~  330 (476)
T KOG0646|consen  261 RHEENTQINVLVGHENESAITCLAISTDGTLLLSGDE-DGKVCVWDIYSKQCIRTL-QTSKGPVTNLQINPL  330 (476)
T ss_pred             cccccceeeeeccccCCcceeEEEEecCccEEEeeCC-CCCEEEEecchHHHHHHH-hhhccccceeEeecc
Confidence                 23445556555568999999999999888555 899999999999988887 346789999998663

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.91  E-value=3.6e-22  Score=136.89  Aligned_cols=198  Identities=7%  Similarity=0.041  Sum_probs=155.8

Q ss_pred             eeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEE
Q 040370           11 RAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIR   90 (228)
Q Consensus        11 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~   90 (228)
                      ....+-.|..+|+|+.+++....+++|+.|++|++||............     .+.|.++..+  ++.|+.|+.|..+.
T Consensus        86 ~~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~-----~kkVy~~~v~--g~~LvVg~~~r~v~  158 (323)
T KOG1036|consen   86 NEDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQ-----GKKVYCMDVS--GNRLVVGTSDRKVL  158 (323)
T ss_pred             cceeeccCCCceEEEEeeccCCeEEEcccCccEEEEecccccccccccc-----CceEEEEecc--CCEEEEeecCceEE
Confidence            3445557999999999999888999999999999999987443333322     4578888775  77899999999999


Q ss_pred             EEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCC----eeEEEEecce-------eeeeeeEE
Q 040370           91 LWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSG----RLVKQYLGAT-------HTQLRFQA  159 (228)
Q Consensus        91 iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~----~~~~~~~~~~-------~~~~~~~~  159 (228)
                      +||+++...........-+..+.++++.|++.-+++++-||.|.+=.++..    +....++.|.       ...++.++
T Consensus       159 iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai  238 (323)
T KOG1036|consen  159 IYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAI  238 (323)
T ss_pred             EEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEecee
Confidence            999998776554433333668899999998888999999999988766654    2333343322       23467889


Q ss_pred             EECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecC
Q 040370          160 VFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGT  217 (228)
Q Consensus       160 ~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~  217 (228)
                      .|+|-...++++|+ ||.|.+||+.+.+.+..+ ......|.+++|+.+|..||.++.
T Consensus       239 ~Fhp~~~tfaTgGs-DG~V~~Wd~~~rKrl~q~-~~~~~SI~slsfs~dG~~LAia~s  294 (323)
T KOG1036|consen  239 AFHPIHGTFATGGS-DGIVNIWDLFNRKRLKQL-AKYETSISSLSFSMDGSLLAIASS  294 (323)
T ss_pred             EeccccceEEecCC-CceEEEccCcchhhhhhc-cCCCCceEEEEeccCCCeEEEEec
Confidence            99999888887766 899999999999988888 455778999999999999999874

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=2.2e-22  Score=155.28  Aligned_cols=189  Identities=16%  Similarity=0.225  Sum_probs=158.0

Q ss_pred             ecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCC
Q 040370           17 QDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVS   96 (228)
Q Consensus        17 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~   96 (228)
                      ..+-++++++|+.+|+++|.|+.|-.|++-++.+......++.   | .++|.++.|+|.+++||+.+.||.|++||+++
T Consensus        94 Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrg---h-~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~  169 (933)
T KOG1274|consen   94 RFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRG---H-DAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQD  169 (933)
T ss_pred             eeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecc---c-CCceeeeeEcCCCCEEEEEecCceEEEEEccc
Confidence            3467899999999999999999999999999998776655543   3 89999999999999999999999999999999


Q ss_pred             CceeeEEeccc------ccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEE
Q 040370           97 ANCVRSIVGAH------GTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLS  170 (228)
Q Consensus        97 ~~~~~~~~~~~------~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (228)
                      +.....+..-.      ....+..++|+|++..++..+.|+.|++|+.........+....+......+.|+|+|.|+++
T Consensus       170 ~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAA  249 (933)
T KOG1274|consen  170 GILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAA  249 (933)
T ss_pred             chhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEee
Confidence            87766654321      134567799999988899999999999999999999888887766667899999999999999


Q ss_pred             eeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEe
Q 040370          171 IDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITC  215 (228)
Q Consensus       171 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~  215 (228)
                      ++- ||.|.|||..+.+.     ......|.+++|.|+.+.+-.-
T Consensus       250 s~~-~g~I~vWnv~t~~~-----~~~~~~Vc~~aw~p~~n~it~~  288 (933)
T KOG1274|consen  250 STL-DGQILVWNVDTHER-----HEFKRAVCCEAWKPNANAITLI  288 (933)
T ss_pred             ecc-CCcEEEEecccchh-----ccccceeEEEecCCCCCeeEEE
Confidence            776 79999999988322     2345689999999987754433

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.91  E-value=6.9e-23  Score=139.61  Aligned_cols=208  Identities=15%  Similarity=0.249  Sum_probs=156.5

Q ss_pred             eecCcceEEEEEeCCC-----CEEEEecCCCeEEEEEcccceEEeeec-----cceeeeccceeeEEeCC-CCCeEEEEe
Q 040370           16 IQDTHNVRSVSFHPSG-----DFLLAGTDHPIAHLYDVNTFQCYLSAN-----VPEISVNGAINQVRYSS-TGGMYVTAS   84 (228)
Q Consensus        16 ~~~~~~v~~~~~~~~~-----~~l~~~~~d~~i~vw~~~~~~~~~~~~-----~~~~~~~~~i~~~~~~~-~~~~l~~~~   84 (228)
                      +.|..+++.+.|.|+.     ++||+.+  ..+++|.+...+......     ....++..++++..|+. +-+++.+++
T Consensus        93 fd~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSS  170 (364)
T KOG0290|consen   93 FDHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSS  170 (364)
T ss_pred             CCCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeec
Confidence            4788999999999976     3555554  379999987422111110     11223377899999997 677999999


Q ss_pred             cCCeEEEEeCCCCce---eeEEecccccceeEEEEECCCC-CEEEEeeCCCeEEEEEccCCeeEEEE-ecceeeeeeeEE
Q 040370           85 KDGAIRLWDGVSANC---VRSIVGAHGTAEATSANFTKDQ-RFVLSCGKDSTVKLWEVSSGRLVKQY-LGATHTQLRFQA  159 (228)
Q Consensus        85 ~dg~v~iwd~~~~~~---~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~~wd~~~~~~~~~~-~~~~~~~~~~~~  159 (228)
                      -|-+..|||++++..   ...+-.|  ..+|..++|...+ +.+++.+.||.+|+||+|..+-...+ +......+...+
T Consensus       171 iDTTCTiWdie~~~~~~vkTQLIAH--DKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRL  248 (364)
T KOG0290|consen  171 IDTTCTIWDIETGVSGTVKTQLIAH--DKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRL  248 (364)
T ss_pred             ccCeEEEEEEeeccccceeeEEEec--CcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceee
Confidence            999999999998743   3334444  7899999999844 57899999999999999986654433 333335667788


Q ss_pred             EECCCCc-EEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCC-CCcEEEEecCCCCEEEeeec
Q 040370          160 VFNDTEE-FVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSP-AEAAFITCGTDRSVRFWKEI  227 (228)
Q Consensus       160 ~~~~~~~-~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~vwd~~  227 (228)
                      .|++... ++++...+...|.+.|+|..........+|.+.|+.++|.| ....|+|+|.|..+.+||+.
T Consensus       249 swnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~  318 (364)
T KOG0290|consen  249 SWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQ  318 (364)
T ss_pred             ccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecc
Confidence            8888765 45555555578999999987665555589999999999999 56789999999999999974

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.91  E-value=2.3e-22  Score=136.97  Aligned_cols=202  Identities=16%  Similarity=0.292  Sum_probs=156.0

Q ss_pred             cCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceE-Eeeeccce-eeeccceeeEEeCC--CCCeEEEEecCCeEEEEe
Q 040370           18 DTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQC-YLSANVPE-ISVNGAINQVRYSS--TGGMYVTASKDGAIRLWD   93 (228)
Q Consensus        18 ~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~-~~~~~~~~-~~~~~~i~~~~~~~--~~~~l~~~~~dg~v~iwd   93 (228)
                      +-+.|.|+.|.|++..+++-. |..|.+|+++.+.. ........ ..+....++-+|+|  +++.+++. .|+++..||
T Consensus       122 avg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~D  199 (370)
T KOG1007|consen  122 AVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFWD  199 (370)
T ss_pred             HhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CCCcEEEEE
Confidence            446899999999999998776 77899999998765 22222211 11255678889999  67777766 479999999


Q ss_pred             CCCCceeeEEecccccceeEEEEECCCCC-EEEEeeCCCeEEEEEccCCe-eEEEEecceeeeeeeEEEECCCCcEEEEe
Q 040370           94 GVSANCVRSIVGAHGTAEATSANFTKDQR-FVLSCGKDSTVKLWEVSSGR-LVKQYLGATHTQLRFQAVFNDTEEFVLSI  171 (228)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~~wd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (228)
                      +++.+....+...| ...+..+.|+|+.+ +|++|+.||.|++||.|..+ ++..+.+  |...+.++.|+|....++.+
T Consensus       200 ~RT~~~~~sI~dAH-gq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~--HsHWvW~VRfn~~hdqLiLs  276 (370)
T KOG1007|consen  200 LRTMKKNNSIEDAH-GQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPG--HSHWVWAVRFNPEHDQLILS  276 (370)
T ss_pred             ccchhhhcchhhhh-cceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCC--CceEEEEEEecCccceEEEe
Confidence            99998888887766 67899999999765 68899999999999998754 4555544  78889999999998887777


Q ss_pred             eCCCCeEEEEEcCCcc-----------------------------eeEEeecCCCCCcEEEEeCC-CCcEEEEecCCCCE
Q 040370          172 DEPSNEIVIWDALTAE-----------------------------KVAKWSSNHIGAPRWIEHSP-AEAAFITCGTDRSV  221 (228)
Q Consensus       172 ~~~d~~i~i~d~~~~~-----------------------------~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i  221 (228)
                      ++.|..|.+|....-.                             .+.++ ..|...|.+++|+. +.-.+|+-+.||++
T Consensus       277 ~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~ty-dehEDSVY~~aWSsadPWiFASLSYDGRv  355 (370)
T KOG1007|consen  277 GGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETY-DEHEDSVYALAWSSADPWIFASLSYDGRV  355 (370)
T ss_pred             cCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccc-cccccceEEEeeccCCCeeEEEeccCceE
Confidence            7779999999653211                             11122 57999999999988 55678888999998


Q ss_pred             EEee
Q 040370          222 RFWK  225 (228)
Q Consensus       222 ~vwd  225 (228)
                      .|=+
T Consensus       356 iIs~  359 (370)
T KOG1007|consen  356 IISS  359 (370)
T ss_pred             Eeec
Confidence            7744

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=3.2e-21  Score=127.52  Aligned_cols=207  Identities=18%  Similarity=0.317  Sum_probs=166.1

Q ss_pred             eeEEEeecCcceEEEEEeC----CCCEEEEec-CCCeEEEEEcccceEEeeeccceeeeccceeeE-EeCCCCCeEEEEe
Q 040370           11 RAFRVIQDTHNVRSVSFHP----SGDFLLAGT-DHPIAHLYDVNTFQCYLSANVPEISVNGAINQV-RYSSTGGMYVTAS   84 (228)
Q Consensus        11 ~~~~~~~~~~~v~~~~~~~----~~~~l~~~~-~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~l~~~~   84 (228)
                      ..+++.-|.+.|+.++|-.    .+..|++++ .|-.|++-|...|+....+..+    .+.|.++ .|  ++-.+++|+
T Consensus       128 ~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sgh----tghilalysw--n~~m~~sgs  201 (350)
T KOG0641|consen  128 HDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGH----TGHILALYSW--NGAMFASGS  201 (350)
T ss_pred             cceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCC----cccEEEEEEe--cCcEEEccC
Confidence            4456677999999999964    345666654 4667777788888876665544    5556555 35  578999999


Q ss_pred             cCCeEEEEeCCCCceeeEEecccc-----cceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEE
Q 040370           85 KDGAIRLWDGVSANCVRSIVGAHG-----TAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQA  159 (228)
Q Consensus        85 ~dg~v~iwd~~~~~~~~~~~~~~~-----~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~  159 (228)
                      .|.+|++||++-...+..+....+     ...|.+++..|.|++|++|-.|....+||++.++.++.+..  |...+.++
T Consensus       202 qdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~p--hsadir~v  279 (350)
T KOG0641|consen  202 QDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHP--HSADIRCV  279 (350)
T ss_pred             CCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCC--CccceeEE
Confidence            999999999998888777644221     36789999999999999999999999999999999999866  77889999


Q ss_pred             EECCCCcEEEEeeCCCCeEEEEEcCCc---ceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeee
Q 040370          160 VFNDTEEFVLSIDEPSNEIVIWDALTA---EKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKE  226 (228)
Q Consensus       160 ~~~~~~~~~~~~~~~d~~i~i~d~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~  226 (228)
                      .|+|...|+++++. |..|++-|+...   +........|...+..+.|+|..--+++.+.|.++.+|-+
T Consensus       280 rfsp~a~yllt~sy-d~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~  348 (350)
T KOG0641|consen  280 RFSPGAHYLLTCSY-DMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWAL  348 (350)
T ss_pred             EeCCCceEEEEecc-cceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcceEEEecc
Confidence            99999999998665 899999998632   2233333679999999999999999999999999999975

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.91  E-value=1.4e-22  Score=153.35  Aligned_cols=223  Identities=14%  Similarity=0.243  Sum_probs=169.2

Q ss_pred             CCcCCccc-cceeEEEeecCcceEEEEEeCC-----------CCEEEEecCCCeEEEEEcccceEEeeec----------
Q 040370            1 FFDFSKAT-AKRAFRVIQDTHNVRSVSFHPS-----------GDFLLAGTDHPIAHLYDVNTFQCYLSAN----------   58 (228)
Q Consensus         1 iwd~~~~~-~~~~~~~~~~~~~v~~~~~~~~-----------~~~l~~~~~d~~i~vw~~~~~~~~~~~~----------   58 (228)
                      |||+.+.. ..+....+-|...|..+.--|-           ...|.+++.|++|++|+++.+..-..+.          
T Consensus       350 vWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~k  429 (1080)
T KOG1408|consen  350 VWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSK  429 (1080)
T ss_pred             EEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhc
Confidence            58887654 3466777789999988877661           1358899999999999997632111100          


Q ss_pred             cc-----------------------eeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCCCceeeEEecccccceeEEE
Q 040370           59 VP-----------------------EISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSA  115 (228)
Q Consensus        59 ~~-----------------------~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~  115 (228)
                      .+                       .......+.+++.+|+|++|++|..-|+++||++.+-+....+..|  ..+|.|+
T Consensus       430 i~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAH--esEilcL  507 (1080)
T KOG1408|consen  430 IPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAH--ESEILCL  507 (1080)
T ss_pred             CccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecc--cceeEEE
Confidence            00                       0001446899999999999999999999999999998888888776  8899999


Q ss_pred             EECC---CCCEEEEeeCCCeEEEEEccCCe-eEEEEec------------------------------------------
Q 040370          116 NFTK---DQRFVLSCGKDSTVKLWEVSSGR-LVKQYLG------------------------------------------  149 (228)
Q Consensus       116 ~~~~---~~~~l~~~~~d~~i~~wd~~~~~-~~~~~~~------------------------------------------  149 (228)
                      .|+.   ..++|++++.|+.|.+||+...- +++++.+                                          
T Consensus       508 eyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f  587 (1080)
T KOG1408|consen  508 EYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLF  587 (1080)
T ss_pred             eecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceec
Confidence            9986   45789999999999999985321 1111111                                          


Q ss_pred             --ce---eeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeec--CCCCCcEEEEeCCCCcEEEEecCCCCEE
Q 040370          150 --AT---HTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSS--NHIGAPRWIEHSPAEAAFITCGTDRSVR  222 (228)
Q Consensus       150 --~~---~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~s~~~dg~i~  222 (228)
                        +.   .....+.+...|..+++++++. |..|+|||+.+++....+..  +|.+....+...|.|.||++.+.|.++.
T Consensus       588 ~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQ-Drnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~  666 (1080)
T KOG1408|consen  588 PRHTQTLSKTTLYDMAVDPTSKLVVTVCQ-DRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLC  666 (1080)
T ss_pred             cccccccccceEEEeeeCCCcceEEEEec-ccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceE
Confidence              00   1223456677788888888666 89999999999999988853  5677889999999999999999999999


Q ss_pred             Eeee
Q 040370          223 FWKE  226 (228)
Q Consensus       223 vwd~  226 (228)
                      ++|.
T Consensus       667 ~~Df  670 (1080)
T KOG1408|consen  667 FVDF  670 (1080)
T ss_pred             EEEe
Confidence            9995

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.91  E-value=3.2e-21  Score=140.48  Aligned_cols=213  Identities=16%  Similarity=0.208  Sum_probs=137.9

Q ss_pred             CCcCCccccceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeE
Q 040370            1 FFDFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMY   80 (228)
Q Consensus         1 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l   80 (228)
                      |||+.+....-  .....++.|....|+|....++.....+.+..|+++.+...+.....+.+.+..|.|++|.++|. +
T Consensus       184 VWdWqk~~~~~--~vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd-v  260 (626)
T KOG2106|consen  184 VWDWQKKAKLG--PVKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD-V  260 (626)
T ss_pred             hhhchhhhccC--cceeccceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCC-E
Confidence            57777544332  23345778999999995555554445689999999998877666555555467899999999886 7


Q ss_pred             EEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEcc---------------------
Q 040370           81 VTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVS---------------------  139 (228)
Q Consensus        81 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~---------------------  139 (228)
                      +||..+|.|.||+..+.+..+....|  .+.|.+++.-.+|. |++|+.|+.|..||-.                     
T Consensus       261 iTgDS~G~i~Iw~~~~~~~~k~~~aH--~ggv~~L~~lr~Gt-llSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e  337 (626)
T KOG2106|consen  261 ITGDSGGNILIWSKGTNRISKQVHAH--DGGVFSLCMLRDGT-LLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAE  337 (626)
T ss_pred             EeecCCceEEEEeCCCceEEeEeeec--CCceEEEEEecCcc-EeecCccceEEeccccccccccccCchhcCCeeEEec
Confidence            89999999999997766655555432  45555555555554 2335555555555411                     


Q ss_pred             -----------------------------------------------------------CCeeEEEEecceeeeeeeEEE
Q 040370          140 -----------------------------------------------------------SGRLVKQYLGATHTQLRFQAV  160 (228)
Q Consensus       140 -----------------------------------------------------------~~~~~~~~~~~~~~~~~~~~~  160 (228)
                                                                                 ..++.....   ...+..++.
T Consensus       338 ~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~~~k~~wt~~---~~d~~~~~~  414 (626)
T KOG2106|consen  338 GKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWNDHKLEWTKI---IEDPAECAD  414 (626)
T ss_pred             CCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEccCCceeEEEE---ecCceeEee
Confidence                                                                       111111111   123344555


Q ss_pred             ECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeee
Q 040370          161 FNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKE  226 (228)
Q Consensus       161 ~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~  226 (228)
                      |+|.+ .+++ |...|...+.|..+...+... .. ..+++.++|+|+|.+||.|+.|+.|.+|.+
T Consensus       415 fhpsg-~va~-Gt~~G~w~V~d~e~~~lv~~~-~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~V  476 (626)
T KOG2106|consen  415 FHPSG-VVAV-GTATGRWFVLDTETQDLVTIH-TD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRV  476 (626)
T ss_pred             ccCcc-eEEE-eeccceEEEEecccceeEEEE-ec-CCceEEEEEcCCCCEEEEecCCCeEEEEEE
Confidence            55555 3332 233455556665553333332 33 789999999999999999999999999976

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.91  E-value=9.8e-23  Score=150.96  Aligned_cols=204  Identities=17%  Similarity=0.239  Sum_probs=154.7

Q ss_pred             eeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCC------------
Q 040370           11 RAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGG------------   78 (228)
Q Consensus        11 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~------------   78 (228)
                      ..+.+.+|++.|+++...|.|.+|++|+.||+|+||.+.++.++.....     .+.|.|++|+|.+.            
T Consensus       392 ~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~-----d~~I~~vaw~P~~~~~vLAvA~~~~~  466 (733)
T KOG0650|consen  392 CALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQF-----DSEIRSVAWNPLSDLCVLAVAVGECV  466 (733)
T ss_pred             eeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEee-----cceeEEEEecCCCCceeEEEEecCce
Confidence            3445569999999999999999999999999999999999998876654     45566666666443            


Q ss_pred             --------------------------------------------------------------------eEEEEecC---C
Q 040370           79 --------------------------------------------------------------------MYVTASKD---G   87 (228)
Q Consensus        79 --------------------------------------------------------------------~l~~~~~d---g   87 (228)
                                                                                          +|++...+   .
T Consensus       467 ~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~  546 (733)
T KOG0650|consen  467 LIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNK  546 (733)
T ss_pred             EEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcc
Confidence                                                                                33222211   1


Q ss_pred             eEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcE
Q 040370           88 AIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEF  167 (228)
Q Consensus        88 ~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (228)
                      .|.|.++........+..  ..+.+.++.|+|...+|+.++. ..|++||+..+..+..+..  ....+..++.+|.|..
T Consensus       547 ~VliHQLSK~~sQ~PF~k--skG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~t--g~kwiS~msihp~GDn  621 (733)
T KOG0650|consen  547 SVLIHQLSKRKSQSPFRK--SKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLT--GSKWISSMSIHPNGDN  621 (733)
T ss_pred             eEEEEecccccccCchhh--cCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhc--CCeeeeeeeecCCCCe
Confidence            222233222222211211  2567899999999999988875 5699999988777766654  5667889999999999


Q ss_pred             EEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEee
Q 040370          168 VLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWK  225 (228)
Q Consensus       168 ~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd  225 (228)
                      +++++. |+.+..||+.-..........|...+++++|++.-.++++|+.||.+.|+-
T Consensus       622 li~gs~-d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfh  678 (733)
T KOG0650|consen  622 LILGSY-DKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFH  678 (733)
T ss_pred             EEEecC-CCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEe
Confidence            999666 899999999877665555578999999999999999999999999999874

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.91  E-value=1.1e-22  Score=138.63  Aligned_cols=207  Identities=16%  Similarity=0.223  Sum_probs=158.0

Q ss_pred             eecCcceEEEEEeC-CCCEEEEecCC-------CeEEEEEcccceEEe------ee-ccceeeeccceeeEEeCCCCCeE
Q 040370           16 IQDTHNVRSVSFHP-SGDFLLAGTDH-------PIAHLYDVNTFQCYL------SA-NVPEISVNGAINQVRYSSTGGMY   80 (228)
Q Consensus        16 ~~~~~~v~~~~~~~-~~~~l~~~~~d-------~~i~vw~~~~~~~~~------~~-~~~~~~~~~~i~~~~~~~~~~~l   80 (228)
                      ..|.++|..++-+| +...|+++..+       ..+.||.+.......      .. .....+ -+.|.|+.|.|++..+
T Consensus        60 ~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldtea-vg~i~cvew~Pns~kl  138 (370)
T KOG1007|consen   60 FHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEA-VGKINCVEWEPNSDKL  138 (370)
T ss_pred             hcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHH-hCceeeEEEcCCCCee
Confidence            35778999999999 55666665432       247799886533211      01 111122 4589999999999988


Q ss_pred             EEEecCCeEEEEeCCCCce-eeEEecc---cccceeEEEEECC--CCCEEEEeeCCCeEEEEEccCCeeEEEEecceeee
Q 040370           81 VTASKDGAIRLWDGVSANC-VRSIVGA---HGTAEATSANFTK--DQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQ  154 (228)
Q Consensus        81 ~~~~~dg~v~iwd~~~~~~-~~~~~~~---~~~~~i~~~~~~~--~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~  154 (228)
                      ++-. |..|.+|++..+.. ...+...   .+....++-+|+|  +++.+++. .|+++..||+|+.+....+.. .|..
T Consensus       139 asm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~D~RT~~~~~sI~d-AHgq  215 (370)
T KOG1007|consen  139 ASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFWDLRTMKKNNSIED-AHGQ  215 (370)
T ss_pred             EEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CCCcEEEEEccchhhhcchhh-hhcc
Confidence            8776 88999999988765 3333221   1244677888999  67777665 588999999999888777764 3788


Q ss_pred             eeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCC-CCcEEEEecCCCCEEEeee
Q 040370          155 LRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSP-AEAAFITCGTDRSVRFWKE  226 (228)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~vwd~  226 (228)
                      .+..+.|+|+.+++++++++||.|++||.|..+.......+|...|.++.|+| ..++++++|.|..|.+|-.
T Consensus       216 ~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca  288 (370)
T KOG1007|consen  216 RVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCA  288 (370)
T ss_pred             eeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEec
Confidence            89999999999999999999999999999987766555589999999999999 5678899999999999853

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.91  E-value=7.5e-23  Score=153.63  Aligned_cols=212  Identities=13%  Similarity=0.258  Sum_probs=161.2

Q ss_pred             ceeEEEeecCcceEEEEEeCCCCEEEEecCC-----CeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEe
Q 040370           10 KRAFRVIQDTHNVRSVSFHPSGDFLLAGTDH-----PIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTAS   84 (228)
Q Consensus        10 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~   84 (228)
                      ++..++.+|..+|.+++.+|+++++|+++..     ..|++|+..+-.....+.   +| .-.|+.++|||++++|++.+
T Consensus       516 PEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~---~H-sLTVT~l~FSpdg~~LLsvs  591 (764)
T KOG1063|consen  516 PEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELE---GH-SLTVTRLAFSPDGRYLLSVS  591 (764)
T ss_pred             hhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheec---cc-ceEEEEEEECCCCcEEEEee
Confidence            4556778999999999999999999998764     468999988766555333   33 77899999999999999999


Q ss_pred             cCCeEEEEeCCCCce----eeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCC--eeEEEEecceeeeeeeE
Q 040370           85 KDGAIRLWDGVSANC----VRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSG--RLVKQYLGATHTQLRFQ  158 (228)
Q Consensus        85 ~dg~v~iwd~~~~~~----~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~--~~~~~~~~~~~~~~~~~  158 (228)
                      .|+++.+|.......    ....+.|  ..-|.++.|+|++.+++|++.|++|++|.....  +.+..+........++.
T Consensus       592 RDRt~sl~~~~~~~~~e~~fa~~k~H--tRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTA  669 (764)
T KOG1063|consen  592 RDRTVSLYEVQEDIKDEFRFACLKAH--TRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTA  669 (764)
T ss_pred             cCceEEeeeeecccchhhhhcccccc--ceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchhccCCceee
Confidence            999999998754321    1223333  889999999999999999999999999998877  44444333345666777


Q ss_pred             EEECC----CCcEEEEeeCCCCeEEEEEcCCcceeEE---------e--ecCCCCCcEEEEeCCC----------CcEEE
Q 040370          159 AVFND----TEEFVLSIDEPSNEIVIWDALTAEKVAK---------W--SSNHIGAPRWIEHSPA----------EAAFI  213 (228)
Q Consensus       159 ~~~~~----~~~~~~~~~~~d~~i~i~d~~~~~~~~~---------~--~~~~~~~v~~~~~~~~----------~~~l~  213 (228)
                      +.+.|    +..++++.|-+.|.|.+|.........+         .  ..+|.+.|+.+.|.|.          ...|+
T Consensus       670 v~~~~~~~~e~~~~vavGle~GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~aV~rl~w~p~~~~~~~~~~~~l~la  749 (764)
T KOG1063|consen  670 VAYLPVDHNEKGDVVAVGLEKGEIVLWRRKREHRQVTVGTFNLDTRLCATIGPDSAVNRLLWRPTCSDDWVEDKEWLNLA  749 (764)
T ss_pred             EEeeccccccccceEEEEecccEEEEEecccccccccceeeeeccccccccChHHhhheeEeccccccccccccceeEEe
Confidence            76654    4455888888889999998651111000         0  1357778999999974          23579


Q ss_pred             EecCCCCEEEeeec
Q 040370          214 TCGTDRSVRFWKEI  227 (228)
Q Consensus       214 s~~~dg~i~vwd~~  227 (228)
                      +|+.|..++++++.
T Consensus       750 ~~g~D~~vri~nv~  763 (764)
T KOG1063|consen  750 VGGDDESVRIFNVD  763 (764)
T ss_pred             eecccceeEEeecc
Confidence            99999999999864

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.91  E-value=1.1e-22  Score=144.59  Aligned_cols=199  Identities=15%  Similarity=0.197  Sum_probs=156.7

Q ss_pred             EEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCCCceeeE
Q 040370           23 RSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRS  102 (228)
Q Consensus        23 ~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~  102 (228)
                      .+++|+++|..+++|+.||.+|||+..+...+.....    |.+.|.++.|+|||+.|++-+.| ..+||+++++..+..
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~----~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~  222 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIA----HHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALAR  222 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHh----hcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhh
Confidence            7899999999999999999999999877665443332    27889999999999999999999 999999999977766


Q ss_pred             EecccccceeEEEEECCCC---C--EEEEeeCCCeEEEEEccCCee---EEEEecceeeeeeeEEEECCCCcEEEEeeCC
Q 040370          103 IVGAHGTAEATSANFTKDQ---R--FVLSCGKDSTVKLWEVSSGRL---VKQYLGATHTQLRFQAVFNDTEEFVLSIDEP  174 (228)
Q Consensus       103 ~~~~~~~~~i~~~~~~~~~---~--~l~~~~~d~~i~~wd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (228)
                      ............+.|+.++   .  .++.....+.|+.||+.....   ++..+.......+.++..+++|++++.++. 
T Consensus       223 ~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~-  301 (398)
T KOG0771|consen  223 KTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTM-  301 (398)
T ss_pred             cCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEecc-
Confidence            6543335566778888776   2  233334456677777654322   111111113456889999999999998666 


Q ss_pred             CCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370          175 SNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEI  227 (228)
Q Consensus       175 d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~  227 (228)
                      ||.|-+++..+.+.....+..|...|+.+.|+|+.+++++.+.|....+..+.
T Consensus       302 dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~  354 (398)
T KOG0771|consen  302 DGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLA  354 (398)
T ss_pred             CCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEe
Confidence            89999999999999999888999999999999999999999999988887653

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.90  E-value=2e-22  Score=142.75  Aligned_cols=206  Identities=19%  Similarity=0.262  Sum_probs=151.1

Q ss_pred             EEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcc--------c-----ceEEeeeccceeeeccceeeEEeCCCCCeE
Q 040370           14 RVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVN--------T-----FQCYLSANVPEISVNGAINQVRYSSTGGMY   80 (228)
Q Consensus        14 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~--------~-----~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l   80 (228)
                      .+..|...|+++.|+|+|+.||+|+.+|.|.+|...        +     .+.........+ |...|..++|+|+++++
T Consensus        60 ~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~-h~~diydL~Ws~d~~~l  138 (434)
T KOG1009|consen   60 SLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRG-HRDDIYDLAWSPDSNFL  138 (434)
T ss_pred             cccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecc-cccchhhhhccCCCcee
Confidence            344799999999999999999999999999999876        2     111112222223 37899999999999999


Q ss_pred             EEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEe------------
Q 040370           81 VTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYL------------  148 (228)
Q Consensus        81 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~------------  148 (228)
                      ++++.|..+++||+..|+....+..|  ...+..++|.|-++++++-+.|...+.+.+...+.+....            
T Consensus       139 ~s~s~dns~~l~Dv~~G~l~~~~~dh--~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~  216 (434)
T KOG1009|consen  139 VSGSVDNSVRLWDVHAGQLLAILDDH--EHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNER  216 (434)
T ss_pred             eeeeccceEEEEEeccceeEeecccc--ccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCC
Confidence            99999999999999999999988877  6688999999999999998888866666554322111110            


Q ss_pred             ---------cceeeeeeeEEEECCCCcE----------------------------------------------------
Q 040370          149 ---------GATHTQLRFQAVFNDTEEF----------------------------------------------------  167 (228)
Q Consensus       149 ---------~~~~~~~~~~~~~~~~~~~----------------------------------------------------  167 (228)
                               ...........+|+|+|..                                                    
T Consensus       217 e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~e  296 (434)
T KOG1009|consen  217 EGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYE  296 (434)
T ss_pred             CcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEE
Confidence                     0000000111222222222                                                    


Q ss_pred             -----------------EEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEE
Q 040370          168 -----------------VLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRF  223 (228)
Q Consensus       168 -----------------~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~v  223 (228)
                                       +++.+. ...+++||..+..++.....-|...++.++|+++|..|+..|.||...+
T Consensus       297 lrp~~~~~~~~~lpyrlvfaiAt-~~svyvydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~  368 (434)
T KOG1009|consen  297 LRPLSSEKFLFVLPYRLVFAIAT-KNSVYVYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSL  368 (434)
T ss_pred             eccccccccccccccceEEEEee-cceEEEeccccccceEEEeeeeeeeecceeecCCCcEEEEeccCCceEE
Confidence                             333333 3678888888888887776779999999999999999999999997654

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.90  E-value=2.3e-22  Score=149.87  Aligned_cols=210  Identities=17%  Similarity=0.279  Sum_probs=151.2

Q ss_pred             EEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCC-CCeEEEEecCCeEEE
Q 040370           13 FRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSST-GGMYVTASKDGAIRL   91 (228)
Q Consensus        13 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~v~i   91 (228)
                      .....|...|..+.|-|....|++++.|.++++||++..++.... ...+| .+.|.+++|.|. ...|++|+.||.|.|
T Consensus        94 k~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~-~~~GH-~~SvkS~cf~~~n~~vF~tGgRDg~ill  171 (720)
T KOG0321|consen   94 KKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGR-LNLGH-TGSVKSECFMPTNPAVFCTGGRDGEILL  171 (720)
T ss_pred             cccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecce-eeccc-ccccchhhhccCCCcceeeccCCCcEEE
Confidence            445579999999999997778999999999999999998876553 33344 899999999995 558899999999999


Q ss_pred             EeCCCCce--------------------e-------eEEecccccceeEE---EEECCCCCEEEEeeC-CCeEEEEEccC
Q 040370           92 WDGVSANC--------------------V-------RSIVGAHGTAEATS---ANFTKDQRFVLSCGK-DSTVKLWEVSS  140 (228)
Q Consensus        92 wd~~~~~~--------------------~-------~~~~~~~~~~~i~~---~~~~~~~~~l~~~~~-d~~i~~wd~~~  140 (228)
                      ||++-...                    .       .....  ....|.+   +.+..|...|++++. |+.|+|||++.
T Consensus       172 WD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA--~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk  249 (720)
T KOG0321|consen  172 WDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKA--ASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRK  249 (720)
T ss_pred             EEEeccchhhHHHHhhhhhccccCCCCCCchhhcccccccc--ccCceeeeeEEEEEeccceeeeccCCCcceEEEeecc
Confidence            99764320                    0       00011  1223333   445567888998887 99999999997


Q ss_pred             CeeEEEEe------ccee---eeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEe-ecCCCCC--cEEEEeCCC
Q 040370          141 GRLVKQYL------GATH---TQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKW-SSNHIGA--PRWIEHSPA  208 (228)
Q Consensus       141 ~~~~~~~~------~~~~---~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~-~~~~~~~--v~~~~~~~~  208 (228)
                      ........      .+.+   ...+.++.....|.++++.+. |+.|++|++.+...-... ..++...  -..-..+|+
T Consensus       250 ~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCt-D~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd  328 (720)
T KOG0321|consen  250 NYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCT-DNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPD  328 (720)
T ss_pred             cccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEec-CCcEEEEeccccCcCchhhccCcccceeeeeeecCCC
Confidence            65433221      1112   345567777888999999888 899999999875432222 1222211  112346899


Q ss_pred             CcEEEEecCCCCEEEeeec
Q 040370          209 EAAFITCGTDRSVRFWKEI  227 (228)
Q Consensus       209 ~~~l~s~~~dg~i~vwd~~  227 (228)
                      +.++++|+.|....+|.+.
T Consensus       329 ~~~l~SgSsd~~ayiw~vs  347 (720)
T KOG0321|consen  329 DCSLLSGSSDEQAYIWVVS  347 (720)
T ss_pred             CceEeccCCCcceeeeeec
Confidence            9999999999999999863

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.90  E-value=1.5e-22  Score=139.95  Aligned_cols=213  Identities=15%  Similarity=0.245  Sum_probs=164.4

Q ss_pred             CCcCCccccceeEEEeecCcce---EEEEEeCCCCEEEEecCCCeEEEEEc-ccceEEee---eccceeeeccceeeEEe
Q 040370            1 FFDFSKATAKRAFRVIQDTHNV---RSVSFHPSGDFLLAGTDHPIAHLYDV-NTFQCYLS---ANVPEISVNGAINQVRY   73 (228)
Q Consensus         1 iwd~~~~~~~~~~~~~~~~~~v---~~~~~~~~~~~l~~~~~d~~i~vw~~-~~~~~~~~---~~~~~~~~~~~i~~~~~   73 (228)
                      +||+-+++.+..++...|.+++   .+++|+|||.+|++|. ...|+++|+ +.|.....   .........+-|.+++|
T Consensus       137 ~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~  215 (406)
T KOG2919|consen  137 LWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAF  215 (406)
T ss_pred             eeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc-cceEEEeeccCCCCCCcchhhhhcccccccceeeeeec
Confidence            5888888888888888887655   5799999999999776 578999999 44432211   11112222677899999


Q ss_pred             CC-CCCeEEEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeC-CCeEEEEEccCCe-eEEEEecc
Q 040370           74 SS-TGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGK-DSTVKLWEVSSGR-LVKQYLGA  150 (228)
Q Consensus        74 ~~-~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~~i~~wd~~~~~-~~~~~~~~  150 (228)
                      +| +.+.++.|+....+-|+.-..+.++..+.+|  .+.|+.++|.++|+.|++|+. |-.|..||+|..+ ++..+..+
T Consensus       216 sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh--~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rh  293 (406)
T KOG2919|consen  216 SPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGH--GGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERH  293 (406)
T ss_pred             cCCCCcceeeecccceeeeEecCCCCceeeeccc--CCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhh
Confidence            99 5568999999999999998888888888765  789999999999999999985 6789999999643 45555544


Q ss_pred             ee-eeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCC-cceeEEeecCCCCCcEEEEeCCCCcEEEEecCC
Q 040370          151 TH-TQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALT-AEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTD  218 (228)
Q Consensus       151 ~~-~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d  218 (228)
                      .. ..........|.++.+++++. ||.|++||++. +..+..+ ..|...++.++++|--.++++++..
T Consensus       294 v~~TNQRI~FDld~~~~~LasG~t-dG~V~vwdlk~~gn~~sv~-~~~sd~vNgvslnP~mpilatssGq  361 (406)
T KOG2919|consen  294 VGDTNQRILFDLDPKGEILASGDT-DGSVRVWDLKDLGNEVSVT-GNYSDTVNGVSLNPIMPILATSSGQ  361 (406)
T ss_pred             ccCccceEEEecCCCCceeeccCC-CccEEEEecCCCCCccccc-ccccccccceecCcccceeeeccCc
Confidence            33 444556667788888777544 89999999998 6656665 6788999999999998888888754

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.90  E-value=3.5e-22  Score=150.08  Aligned_cols=207  Identities=18%  Similarity=0.314  Sum_probs=165.4

Q ss_pred             EEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcc-cceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEE
Q 040370           14 RVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVN-TFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLW   92 (228)
Q Consensus        14 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw   92 (228)
                      -+.+|...|+.++|+|.|++|++.+.|.+-+++-.- .......+..++.| ...++|++|-+....|++|.....+|+|
T Consensus       356 ~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiH-GyDl~c~~~vn~~~~FVSgAdEKVlRvF  434 (764)
T KOG1063|consen  356 VISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIH-GYDLTCLSFVNEDLQFVSGADEKVLRVF  434 (764)
T ss_pred             ccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccc-cccceeeehccCCceeeecccceeeeee
Confidence            345899999999999999999999999999998765 22234455556666 8899999999866679999999999999


Q ss_pred             eCCC-------------------------------------------Cce----e-------------------------
Q 040370           93 DGVS-------------------------------------------ANC----V-------------------------  100 (228)
Q Consensus        93 d~~~-------------------------------------------~~~----~-------------------------  100 (228)
                      +...                                           |..    .                         
T Consensus       435 ~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tL  514 (764)
T KOG1063|consen  435 EAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTL  514 (764)
T ss_pred             cCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhcc
Confidence            7210                                           000    0                         


Q ss_pred             ----eEEecccccceeEEEEECCCCCEEEEeeCCC-----eEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEe
Q 040370          101 ----RSIVGAHGTAEATSANFTKDQRFVLSCGKDS-----TVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSI  171 (228)
Q Consensus       101 ----~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~-----~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (228)
                          .++.  .|..+|.+++.+|+++.+++++...     .|++|+..+-.....+..  |.-.++.+.|+|+++++++.
T Consensus       515 wPEv~KLY--GHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~--HsLTVT~l~FSpdg~~LLsv  590 (764)
T KOG1063|consen  515 WPEVHKLY--GHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEG--HSLTVTRLAFSPDGRYLLSV  590 (764)
T ss_pred             chhhHHhc--cCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecc--cceEEEEEEECCCCcEEEEe
Confidence                0001  1478999999999999999998653     599999988877777776  78889999999999999997


Q ss_pred             eCCCCeEEEEEcCCcceeE---EeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeee
Q 040370          172 DEPSNEIVIWDALTAEKVA---KWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKE  226 (228)
Q Consensus       172 ~~~d~~i~i~d~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~  226 (228)
                      +. |+++.+|.........   .....|..-|.++.|+|++.+++|+|.|..|++|..
T Consensus       591 sR-DRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~  647 (764)
T KOG1063|consen  591 SR-DRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEE  647 (764)
T ss_pred             ec-CceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEec
Confidence            76 8999999875433221   123689999999999999999999999999999975

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.90  E-value=6e-23  Score=141.94  Aligned_cols=211  Identities=14%  Similarity=0.213  Sum_probs=157.5

Q ss_pred             EEEeecCcceEEEEEeCC-CCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEE
Q 040370           13 FRVIQDTHNVRSVSFHPS-GDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRL   91 (228)
Q Consensus        13 ~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i   91 (228)
                      -.+.+|...|+.+.++|+ .+++++++.|..|++|++++..++..+....+| ...|.++.|+++|.+|++|+.|.++++
T Consensus       129 ~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egH-rdeVLSvD~~~~gd~i~ScGmDhslk~  207 (385)
T KOG1034|consen  129 KNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGH-RDEVLSVDFSLDGDRIASCGMDHSLKL  207 (385)
T ss_pred             cceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccc-cCcEEEEEEcCCCCeeeccCCcceEEE
Confidence            345689999999999995 578899999999999999999999999888777 999999999999999999999999999


Q ss_pred             EeCCCCceeeEEe---------------c-----------ccccceeEEEEECCCCCEEEEeeCCCeEEEEEccC-Cee-
Q 040370           92 WDGVSANCVRSIV---------------G-----------AHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSS-GRL-  143 (228)
Q Consensus        92 wd~~~~~~~~~~~---------------~-----------~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~-~~~-  143 (228)
                      |++...+....+.               .           ..|...|-|+.|-  |+++++-+-++.|..|.... .+. 
T Consensus       208 W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~  285 (385)
T KOG1034|consen  208 WRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESI  285 (385)
T ss_pred             EecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hhheeecccCceEEEEecchhhhhh
Confidence            9987432111110               0           0113333444443  67899999999999998721 111 


Q ss_pred             ------------EEEEecceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEee---cCCCCCcEEEEeCCC
Q 040370          144 ------------VKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWS---SNHIGAPRWIEHSPA  208 (228)
Q Consensus       144 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~---~~~~~~v~~~~~~~~  208 (228)
                                  +..+..+..........+.|-++.++++.. .|.+.+||++..++.....   ......|...+|+.|
T Consensus       286 ~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq-~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~d  364 (385)
T KOG1034|consen  286 HNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQ-SGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRD  364 (385)
T ss_pred             hccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccC-CCcEEEEECCCCCCccCceEEeccccceeeeeeeccc
Confidence                        222222222334455677788888887665 6999999999877642211   123456899999999


Q ss_pred             CcEEEEecCCCCEEEeeec
Q 040370          209 EAAFITCGTDRSVRFWKEI  227 (228)
Q Consensus       209 ~~~l~s~~~dg~i~vwd~~  227 (228)
                      +..|+....|++|.-||..
T Consensus       365 gs~lv~vcdd~~Vwrwdrv  383 (385)
T KOG1034|consen  365 GSILVLVCDDGTVWRWDRV  383 (385)
T ss_pred             CcEEEEEeCCCcEEEEEee
Confidence            9999999999999999863

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.90  E-value=1e-20  Score=137.83  Aligned_cols=203  Identities=14%  Similarity=0.234  Sum_probs=159.4

Q ss_pred             eEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEE
Q 040370           12 AFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRL   91 (228)
Q Consensus        12 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i   91 (228)
                      .+...+|..+...++.+|+.+++++++.|+.+++|+  ..+.......     ..++.|+.|+|.| .++.|...|...+
T Consensus       361 ~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~~-----~d~~~~~~fhpsg-~va~Gt~~G~w~V  432 (626)
T KOG2106|consen  361 TLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKII-----EDPAECADFHPSG-VVAVGTATGRWFV  432 (626)
T ss_pred             eEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEEe-----cCceeEeeccCcc-eEEEeeccceEEE
Confidence            345568999999999999999999999999999999  3344443333     6788999999999 8999999999999


Q ss_pred             EeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEe
Q 040370           92 WDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSI  171 (228)
Q Consensus        92 wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (228)
                      .|.++...+..-..   ..+++++.|+|+|.+||.|+.|+.|++|-+..........+..+..++..+.|+++++++.+-
T Consensus       433 ~d~e~~~lv~~~~d---~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~  509 (626)
T KOG2106|consen  433 LDTETQDLVTIHTD---NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSN  509 (626)
T ss_pred             EecccceeEEEEec---CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEec
Confidence            99998655544433   678999999999999999999999999999765544444343355889999999999998886


Q ss_pred             eCCCCeEEEEEcCCcc--------------------------------------------------------------ee
Q 040370          172 DEPSNEIVIWDALTAE--------------------------------------------------------------KV  189 (228)
Q Consensus       172 ~~~d~~i~i~d~~~~~--------------------------------------------------------------~~  189 (228)
                      +. |-.|..|....-+                                                              ..
T Consensus       510 S~-d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~  588 (626)
T KOG2106|consen  510 SG-DYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAP  588 (626)
T ss_pred             cC-ceEEEEEccccCcccceecceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccccCCCccc
Confidence            55 6778888431110                                                              00


Q ss_pred             EEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeee
Q 040370          190 AKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKE  226 (228)
Q Consensus       190 ~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~  226 (228)
                      .....+|.+-|.+++|.-+...|++.+.|..|..|++
T Consensus       589 ~he~~ghs~~vt~V~Fl~~d~~li~tg~D~Si~qW~l  625 (626)
T KOG2106|consen  589 SHEYGGHSSHVTNVAFLCKDSHLISTGKDTSIMQWRL  625 (626)
T ss_pred             ceeeccccceeEEEEEeeCCceEEecCCCceEEEEEe
Confidence            0012468888999999888888888889999999986

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.90  E-value=2e-21  Score=134.35  Aligned_cols=206  Identities=17%  Similarity=0.224  Sum_probs=158.4

Q ss_pred             cCcceEEEEEe-------CCCCEEEEecCCCeEEEEEcccceEEeeeccceee-eccceeeEEeCCCCCeEEEEecCCeE
Q 040370           18 DTHNVRSVSFH-------PSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEIS-VNGAINQVRYSSTGGMYVTASKDGAI   89 (228)
Q Consensus        18 ~~~~v~~~~~~-------~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~v   89 (228)
                      ....|...+|-       |+.+++|+.+.+.-|++||.-+|+....+.....- .-....+++|+|||.+|++|. ...|
T Consensus       103 eg~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-krci  181 (406)
T KOG2919|consen  103 EGETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCI  181 (406)
T ss_pred             cCCEEEEEEeeeccccCCCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc-cceE
Confidence            45677787775       67789999999999999999999977666543110 012457899999999998875 5789


Q ss_pred             EEEeC-CCCceeeEEecc-----cccceeEEEEECC-CCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEEC
Q 040370           90 RLWDG-VSANCVRSIVGA-----HGTAEATSANFTK-DQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFN  162 (228)
Q Consensus        90 ~iwd~-~~~~~~~~~~~~-----~~~~~i~~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~  162 (228)
                      +++|+ +.|+.-......     ...+.+.+++|+| +.+.++.|+....+-+|.-..+.++..+-+  |...++.+.|.
T Consensus       182 rvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llgg--h~gGvThL~~~  259 (406)
T KOG2919|consen  182 RVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGG--HGGGVTHLQWC  259 (406)
T ss_pred             EEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecc--cCCCeeeEEec
Confidence            99999 555422211111     1156788999999 566899999999999998888888888765  78889999999


Q ss_pred             CCCcEEEEeeCCCCeEEEEEcCCcce-eEEeecCCCC-CcEE--EEeCCCCcEEEEecCCCCEEEeeec
Q 040370          163 DTEEFVLSIDEPSNEIVIWDALTAEK-VAKWSSNHIG-APRW--IEHSPAEAAFITCGTDRSVRFWKEI  227 (228)
Q Consensus       163 ~~~~~~~~~~~~d~~i~i~d~~~~~~-~~~~~~~~~~-~v~~--~~~~~~~~~l~s~~~dg~i~vwd~~  227 (228)
                      ++|+.+++++..|..|..||+|.... +..+ ..|.+ .-..  ....|++++|++|+.||.|++||+.
T Consensus       260 edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L-~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk  327 (406)
T KOG2919|consen  260 EDGNKLFSGARKDDKILCWDIRYSRDPVYAL-ERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLK  327 (406)
T ss_pred             cCcCeecccccCCCeEEEEeehhccchhhhh-hhhccCccceEEEecCCCCceeeccCCCccEEEEecC
Confidence            99999999999999999999997654 3344 45544 2223  4456899999999999999999973

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.89  E-value=2.1e-22  Score=147.99  Aligned_cols=215  Identities=15%  Similarity=0.154  Sum_probs=156.4

Q ss_pred             ccceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccce-------EEeeeccceeeeccceeeEEeCCCCCeE
Q 040370            8 TAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQ-------CYLSANVPEISVNGAINQVRYSSTGGMY   80 (228)
Q Consensus         8 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~-------~~~~~~~~~~~~~~~i~~~~~~~~~~~l   80 (228)
                      ..++.+++.+|.++|.|+++.++++.+++|+-||+|+.|++....       .........+| ...++.+++|+....|
T Consensus       333 ~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Gh-tdavw~l~~s~~~~~L  411 (577)
T KOG0642|consen  333 DVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGH-TDAVWLLALSSTKDRL  411 (577)
T ss_pred             ceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceecc-ccceeeeeecccccce
Confidence            346788889999999999999999999999999999999765211       11112223344 8999999999988899


Q ss_pred             EEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCC-CEEEEeeCCCeEEEEEccCCeeEEEEecce-----eee
Q 040370           81 VTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQ-RFVLSCGKDSTVKLWEVSSGRLVKQYLGAT-----HTQ  154 (228)
Q Consensus        81 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~-----~~~  154 (228)
                      ++|+.||++++|+...... ..+......+.-.++.+-... ...++...-+.--++|+.....+..+....     ...
T Consensus       412 lscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~  490 (577)
T KOG0642|consen  412 LSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYP  490 (577)
T ss_pred             eeecCCceEEeeccCCcCc-cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccC
Confidence            9999999999999876655 344333323444556655433 222232223333344444444444333211     123


Q ss_pred             eeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeee
Q 040370          155 LRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKE  226 (228)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~  226 (228)
                      .+..+..+|.....+.+.. |+.|+++|..++..+... ..|...++++++.|+|.+|++++.|+.+++|++
T Consensus       491 ~in~vVs~~~~~~~~~~he-d~~Ir~~dn~~~~~l~s~-~a~~~svtslai~~ng~~l~s~s~d~sv~l~kl  560 (577)
T KOG0642|consen  491 QINKVVSHPTADITFTAHE-DRSIRFFDNKTGKILHSM-VAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKL  560 (577)
T ss_pred             ccceEEecCCCCeeEeccc-CCceecccccccccchhe-eeccceecceeecCCCceEEeecCCceeehhhc
Confidence            4556778888877777555 899999999999999988 789999999999999999999999999999986

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.89  E-value=1e-22  Score=152.34  Aligned_cols=207  Identities=19%  Similarity=0.254  Sum_probs=152.4

Q ss_pred             ecCcceEEEEEeC-CCCEEEEecCCCeEEEEEcccceEEeeec----cceeeeccceeeEEeCC-CCCeEEEEecCCeEE
Q 040370           17 QDTHNVRSVSFHP-SGDFLLAGTDHPIAHLYDVNTFQCYLSAN----VPEISVNGAINQVRYSS-TGGMYVTASKDGAIR   90 (228)
Q Consensus        17 ~~~~~v~~~~~~~-~~~~l~~~~~d~~i~vw~~~~~~~~~~~~----~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~v~   90 (228)
                      .....|+.+.|.| |...||++++||.|++|.+..+.......    ....| ...|+++.|+| -.+.|++++.|.+|+
T Consensus       625 ~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h-~eKI~slRfHPLAadvLa~asyd~Ti~  703 (1012)
T KOG1445|consen  625 FNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIH-GEKITSLRFHPLAADVLAVASYDSTIE  703 (1012)
T ss_pred             ccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecc-cceEEEEEecchhhhHhhhhhccceee
Confidence            4567899999999 88999999999999999998654322222    22233 78899999999 467899999999999


Q ss_pred             EEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCee-EEEEecceeeeeeeEEEECCCCcEEE
Q 040370           91 LWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRL-VKQYLGATHTQLRFQAVFNDTEEFVL  169 (228)
Q Consensus        91 iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (228)
                      +||+++++....+.+|  ...|..++|+|+|+.+++.+.||+|++|..++++. ++.-.+. .......+.|.-++++++
T Consensus       704 lWDl~~~~~~~~l~gH--tdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gp-vgtRgARi~wacdgr~vi  780 (1012)
T KOG1445|consen  704 LWDLANAKLYSRLVGH--TDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGP-VGTRGARILWACDGRIVI  780 (1012)
T ss_pred             eeehhhhhhhheeccC--cCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCC-ccCcceeEEEEecCcEEE
Confidence            9999999999999887  78999999999999999999999999999987654 3322222 123345677888999999


Q ss_pred             EeeCC---CCeEEEEEcCCcc--eeEEeecCCCCCcEEEEeCCC-CcEEEEecCCCCEEEeeec
Q 040370          170 SIDEP---SNEIVIWDALTAE--KVAKWSSNHIGAPRWIEHSPA-EAAFITCGTDRSVRFWKEI  227 (228)
Q Consensus       170 ~~~~~---d~~i~i~d~~~~~--~~~~~~~~~~~~v~~~~~~~~-~~~l~s~~~dg~i~vwd~~  227 (228)
                      ++|.+   .+.|.+||..+-.  .+.+....-.-.+.--.+.+| +.++++|-.|..|.+|.+.
T Consensus       781 v~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~LvP~YD~Ds~~lfltGKGD~~v~~yEv~  844 (1012)
T KOG1445|consen  781 VVGFDKSSERQVQMYDAQTLDLRPLYTQVLDVAPSPLVPHYDYDSNVLFLTGKGDRFVNMYEVI  844 (1012)
T ss_pred             EecccccchhhhhhhhhhhccCCcceeeeecccCccccccccCCCceEEEecCCCceEEEEEec
Confidence            98752   3678888876533  232221111111111223444 3467788889999999864

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.89  E-value=3.5e-21  Score=146.84  Aligned_cols=223  Identities=17%  Similarity=0.162  Sum_probs=163.5

Q ss_pred             CCcCCccccceeEEEeecCcceEEEEEeC-CCCEEEEecCCCeEEEEEcccceE--EeeeccceeeeccceeeEEeCCCC
Q 040370            1 FFDFSKATAKRAFRVIQDTHNVRSVSFHP-SGDFLLAGTDHPIAHLYDVNTFQC--YLSANVPEISVNGAINQVRYSSTG   77 (228)
Q Consensus         1 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~vw~~~~~~~--~~~~~~~~~~~~~~i~~~~~~~~~   77 (228)
                      ||++..+ ..+ .....-..+|+|++|+| +..+++.|+.+|+|.+||+..+..  ..........|..+++.+.|..+.
T Consensus       226 vW~~~~p-~~P-e~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~  303 (555)
T KOG1587|consen  226 VWSLKNP-NTP-ELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNE  303 (555)
T ss_pred             EEecCCC-CCc-eEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccC
Confidence            5888866 222 23345678999999999 778889999999999999998765  444444455568999999997643


Q ss_pred             --CeEEEEecCCeEEEEeCCCCceeeEE-----ec-----ccccceeEEEEECC-CCCEEEEeeCCCeEEEEEccCCeeE
Q 040370           78 --GMYVTASKDGAIRLWDGVSANCVRSI-----VG-----AHGTAEATSANFTK-DQRFVLSCGKDSTVKLWEVSSGRLV  144 (228)
Q Consensus        78 --~~l~~~~~dg~v~iwd~~~~~~~~~~-----~~-----~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~  144 (228)
                        .-|++++.||.|..|+++.-......     ..     ......++++.|.+ +...++.|+.+|.|..-.-...+..
T Consensus       304 ~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~  383 (555)
T KOG1587|consen  304 HNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPA  383 (555)
T ss_pred             CCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCccc
Confidence              45999999999999988754321110     00     11245678999998 5677999999998887433222111


Q ss_pred             E--EEe----cceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcC-CcceeEEeecCCCCCcEEEEeCCCC-cEEEEec
Q 040370          145 K--QYL----GATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDAL-TAEKVAKWSSNHIGAPRWIEHSPAE-AAFITCG  216 (228)
Q Consensus       145 ~--~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~-~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~  216 (228)
                      .  .++    ...|...+..+.++|-+..++.+++ |..++||... ...++..+ ..+...+++++|||.. ..++++.
T Consensus       384 ~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~-~~~~~~v~~vaWSptrpavF~~~d  461 (555)
T KOG1587|consen  384 PEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLSL-DSSPDYVTDVAWSPTRPAVFATVD  461 (555)
T ss_pred             ccccccccccccccCcceEeeecCCCccceeeeec-cceeEeccccCCCCcchhh-hhccceeeeeEEcCcCceEEEEEc
Confidence            1  111    1226778899999999988888777 8999999987 55555555 6677789999999954 5788888


Q ss_pred             CCCCEEEeeec
Q 040370          217 TDRSVRFWKEI  227 (228)
Q Consensus       217 ~dg~i~vwd~~  227 (228)
                      .||.+.+||+.
T Consensus       462 ~~G~l~iWDLl  472 (555)
T KOG1587|consen  462 GDGNLDIWDLL  472 (555)
T ss_pred             CCCceehhhhh
Confidence            89999999986

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.87  E-value=4.4e-20  Score=139.17  Aligned_cols=218  Identities=10%  Similarity=0.127  Sum_probs=161.7

Q ss_pred             CCcCCccccceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEE--------eeecc-ce----------
Q 040370            1 FFDFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCY--------LSANV-PE----------   61 (228)
Q Consensus         1 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~--------~~~~~-~~----------   61 (228)
                      |||.+++.  ....+.+|.+.|.|++|+.+|+.+|+|+.|..|.+|+.+-...+        +.... +-          
T Consensus        37 iyD~ndG~--llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~LkYSH~D~IQCMsFNP~~h~LasCsLs  114 (1081)
T KOG1538|consen   37 VYDTSDGT--LLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILKYSHNDAIQCMSFNPITHQLASCSLS  114 (1081)
T ss_pred             EEeCCCcc--cccccccccceEEEEEEccCCceeccCCCceeEEEecccccceeeeccCCeeeEeecCchHHHhhhcchh
Confidence            35555443  44556689999999999999999999999999999986532111        10000 00          


Q ss_pred             --------------eeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCCCceeeEEec-ccccceeEEEEECCCC-----
Q 040370           62 --------------ISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVG-AHGTAEATSANFTKDQ-----  121 (228)
Q Consensus        62 --------------~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~-~~~~~~i~~~~~~~~~-----  121 (228)
                                    .....++.+++|..||++++.|-.||+|.+-+- +++....+.. .....+|.+++|+|..     
T Consensus       115 dFglWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk-~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~  193 (1081)
T KOG1538|consen  115 DFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNK-NGEEKVKIERPGGSNSPIWSICWNPSSGEGRN  193 (1081)
T ss_pred             hccccChhhhhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecC-CCCcceEEeCCCCCCCCceEEEecCCCCCCcc
Confidence                          011456888999999999999999999999874 4444444433 2337799999999954     


Q ss_pred             CEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcE
Q 040370          122 RFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPR  201 (228)
Q Consensus       122 ~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~  201 (228)
                      ..++......++.+|.+. |+.+..-+.  -.-...++.+.++|.|++.+|+ |+.+.+|- +.|-.+.+. ......|+
T Consensus       194 di~aV~DW~qTLSFy~Ls-G~~Igk~r~--L~FdP~CisYf~NGEy~LiGGs-dk~L~~fT-R~GvrLGTv-g~~D~WIW  267 (1081)
T KOG1538|consen  194 DILAVADWGQTLSFYQLS-GKQIGKDRA--LNFDPCCISYFTNGEYILLGGS-DKQLSLFT-RDGVRLGTV-GEQDSWIW  267 (1081)
T ss_pred             ceEEEEeccceeEEEEec-ceeeccccc--CCCCchhheeccCCcEEEEccC-CCceEEEe-ecCeEEeec-cccceeEE
Confidence            467777788888888774 454442221  2333467888999999999888 79999997 667777776 45677899


Q ss_pred             EEEeCCCCcEEEEecCCCCEEEeeec
Q 040370          202 WIEHSPAEAAFITCGTDRSVRFWKEI  227 (228)
Q Consensus       202 ~~~~~~~~~~l~s~~~dg~i~vwd~~  227 (228)
                      .++..|++++++.|+.||+|..|++.
T Consensus       268 tV~~~PNsQ~v~~GCqDGTiACyNl~  293 (1081)
T KOG1538|consen  268 TVQAKPNSQYVVVGCQDGTIACYNLI  293 (1081)
T ss_pred             EEEEccCCceEEEEEccCeeehhhhH
Confidence            99999999999999999999988864

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.87  E-value=2.7e-21  Score=134.41  Aligned_cols=211  Identities=15%  Similarity=0.199  Sum_probs=144.9

Q ss_pred             cceeEEEeecCcceEEEEEeC--CCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEe--
Q 040370            9 AKRAFRVIQDTHNVRSVSFHP--SGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTAS--   84 (228)
Q Consensus         9 ~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--   84 (228)
                      .+....+.+++..++.++|..  ....+.+++.||+|++||++.............. ..+..|++.+..++.+++|.  
T Consensus        60 g~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~-~~~f~~ld~nck~~ii~~GtE~  138 (376)
T KOG1188|consen   60 GQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQS-GTPFICLDLNCKKNIIACGTEL  138 (376)
T ss_pred             hhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCC-CCcceEeeccCcCCeEEecccc
Confidence            344555667888899999977  4677889999999999999987655444333211 35677787776778888875  


Q ss_pred             --cCCeEEEEeCCCCce-eeEEecccccceeEEEEECC-CCCEEEEeeCCCeEEEEEccCCee----EEEEecceeeeee
Q 040370           85 --KDGAIRLWDGVSANC-VRSIVGAHGTAEATSANFTK-DQRFVLSCGKDSTVKLWEVSSGRL----VKQYLGATHTQLR  156 (228)
Q Consensus        85 --~dg~v~iwd~~~~~~-~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~----~~~~~~~~~~~~~  156 (228)
                        .+-.|.+||+++.+. +..+...| ...|+++.|+| +.+.|++|+.||-|.+||+.....    ...+.   +...+
T Consensus       139 ~~s~A~v~lwDvR~~qq~l~~~~eSH-~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN---~~sSI  214 (376)
T KOG1188|consen  139 TRSDASVVLWDVRSEQQLLRQLNESH-NDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVIN---HGSSI  214 (376)
T ss_pred             ccCceEEEEEEeccccchhhhhhhhc-cCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhc---cccee
Confidence              367899999998776 66665544 78899999999 668999999999999999975421    11111   33344


Q ss_pred             eEEEECCCC-cEEEEeeCCCCeEEEEEcCCcc------------------------------------------------
Q 040370          157 FQAVFNDTE-EFVLSIDEPSNEIVIWDALTAE------------------------------------------------  187 (228)
Q Consensus       157 ~~~~~~~~~-~~~~~~~~~d~~i~i~d~~~~~------------------------------------------------  187 (228)
                      ..+.|...+ +.+.+... .....+|+++.+.                                                
T Consensus       215 ~~igw~~~~ykrI~clTH-~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~  293 (376)
T KOG1188|consen  215 HLIGWLSKKYKRIMCLTH-METFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTI  293 (376)
T ss_pred             eeeeeecCCcceEEEEEc-cCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCCCcceEEEeccccCceeE
Confidence            455554444 11222222 3455555543321                                                


Q ss_pred             -------------eeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEee
Q 040370          188 -------------KVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWK  225 (228)
Q Consensus       188 -------------~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd  225 (228)
                                   .+..+..+|..-|+++.|...+..+.|||+||.+.+|.
T Consensus       294 ~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk  344 (376)
T KOG1188|consen  294 FPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWK  344 (376)
T ss_pred             EEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEe
Confidence                         12222234666677788888888999999999999997

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.87  E-value=2.4e-19  Score=132.59  Aligned_cols=206  Identities=12%  Similarity=0.170  Sum_probs=137.8

Q ss_pred             cCcceEEEEEeCCCCEEEEecC-CCeEEEEEcccce-EEeeeccceeeeccceeeEEeCCCCCeEEEEe-cCCeEEEEeC
Q 040370           18 DTHNVRSVSFHPSGDFLLAGTD-HPIAHLYDVNTFQ-CYLSANVPEISVNGAINQVRYSSTGGMYVTAS-KDGAIRLWDG   94 (228)
Q Consensus        18 ~~~~v~~~~~~~~~~~l~~~~~-d~~i~vw~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~v~iwd~   94 (228)
                      .......++++|++++|++++. ++.|.+|++++.. ........ .+ ......++++|+++++++++ .++.|.+||+
T Consensus        78 ~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~-~~-~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~  155 (330)
T PRK11028         78 LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQII-EG-LEGCHSANIDPDNRTLWVPCLKEDRIRLFTL  155 (330)
T ss_pred             CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeec-cC-CCcccEeEeCCCCCEEEEeeCCCCEEEEEEE
Confidence            3445678999999998887764 8899999997432 11111111 01 23467789999999886554 5699999999


Q ss_pred             CCCceee-----EEecccccceeEEEEECCCCCEEEEeeC-CCeEEEEEccC--Ce--eEEEEecce----eeeeeeEEE
Q 040370           95 VSANCVR-----SIVGAHGTAEATSANFTKDQRFVLSCGK-DSTVKLWEVSS--GR--LVKQYLGAT----HTQLRFQAV  160 (228)
Q Consensus        95 ~~~~~~~-----~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~~i~~wd~~~--~~--~~~~~~~~~----~~~~~~~~~  160 (228)
                      ++...+.     ...... ......+.|+|++++++++.. ++.|.+||+..  ++  .+..+....    .......+.
T Consensus       156 ~~~g~l~~~~~~~~~~~~-g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~  234 (330)
T PRK11028        156 SDDGHLVAQEPAEVTTVE-GAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIH  234 (330)
T ss_pred             CCCCcccccCCCceecCC-CCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEE
Confidence            7633221     111111 334578999999999988876 89999999973  22  233332110    112233578


Q ss_pred             ECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeec--CCCCCcEEEEeCCCCcEEEEecC-CCCEEEeee
Q 040370          161 FNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSS--NHIGAPRWIEHSPAEAAFITCGT-DRSVRFWKE  226 (228)
Q Consensus       161 ~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~s~~~-dg~i~vwd~  226 (228)
                      ++|++++++++...++.|.+|++........+..  .-......+.++|+|++|+++.. ++.|.+|++
T Consensus       235 ~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~  303 (330)
T PRK11028        235 ITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEI  303 (330)
T ss_pred             ECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEE
Confidence            9999999999877789999999865432212110  11234567999999999998775 899999976

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.87  E-value=1.4e-18  Score=122.21  Aligned_cols=160  Identities=11%  Similarity=0.243  Sum_probs=131.8

Q ss_pred             CcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEe--cCCeEEEEeCCC
Q 040370           19 THNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTAS--KDGAIRLWDGVS   96 (228)
Q Consensus        19 ~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~dg~v~iwd~~~   96 (228)
                      ..+|.++.++  .++|++.-.+ .|+|||+++.+.+..+.....+ ...+.++.+++.+.+++-=+  ..|.|.+||+.+
T Consensus        87 pt~IL~VrmN--r~RLvV~Lee-~IyIydI~~MklLhTI~t~~~n-~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~n  162 (391)
T KOG2110|consen   87 PTSILAVRMN--RKRLVVCLEE-SIYIYDIKDMKLLHTIETTPPN-PKGLCALSPNNANCYLAYPGSTTSGDVVLFDTIN  162 (391)
T ss_pred             CCceEEEEEc--cceEEEEEcc-cEEEEecccceeehhhhccCCC-ccceEeeccCCCCceEEecCCCCCceEEEEEccc
Confidence            5667777774  5667777665 4999999999988777654323 44566666666677887433  468999999999


Q ss_pred             CceeeEEecccccceeEEEEECCCCCEEEEeeCCCe-EEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCC
Q 040370           97 ANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDST-VKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPS  175 (228)
Q Consensus        97 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~-i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  175 (228)
                      -+....+..|  ++++.+++|+++|.+|||++..|+ |||+.+.+|+.+..++.......+.+++|+|++.++.+++. .
T Consensus       163 l~~v~~I~aH--~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~-T  239 (391)
T KOG2110|consen  163 LQPVNTINAH--KGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSN-T  239 (391)
T ss_pred             ceeeeEEEec--CCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecC-C
Confidence            9999999876  889999999999999999999987 89999999999999988777888999999999999998877 5


Q ss_pred             CeEEEEEcCC
Q 040370          176 NEIVIWDALT  185 (228)
Q Consensus       176 ~~i~i~d~~~  185 (228)
                      ++|++|.+..
T Consensus       240 eTVHiFKL~~  249 (391)
T KOG2110|consen  240 ETVHIFKLEK  249 (391)
T ss_pred             CeEEEEEecc
Confidence            9999998753

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.87  E-value=1.8e-20  Score=130.40  Aligned_cols=190  Identities=18%  Similarity=0.212  Sum_probs=148.7

Q ss_pred             CEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCC--CCCeEEEEecCCeEEEEeCCCCceeeEEeccc-c
Q 040370           32 DFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSS--TGGMYVTASKDGAIRLWDGVSANCVRSIVGAH-G  108 (228)
Q Consensus        32 ~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~-~  108 (228)
                      ..+|++..+|.|++||..+++.+..+..+    ...++.+.|..  ....+.+|+.||+|++||++.......+.... .
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~----~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~  116 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGP----PATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQS  116 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhhheecCC----CCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCC
Confidence            56889999999999999998877777655    55677888866  45679999999999999999876554444322 2


Q ss_pred             cceeEEEEECCCCCEEEEee----CCCeEEEEEccCCee-EEEEecceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEc
Q 040370          109 TAEATSANFTKDQRFVLSCG----KDSTVKLWEVSSGRL-VKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDA  183 (228)
Q Consensus       109 ~~~i~~~~~~~~~~~l~~~~----~d~~i~~wd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~  183 (228)
                      +.+..+++.+-.++.+++|.    .+..+.+||+|..+. +..+. ..|..-++++.|+|....++.+|+.||-|.+||+
T Consensus       117 ~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~-eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~  195 (376)
T KOG1188|consen  117 GTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLN-ESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDT  195 (376)
T ss_pred             CCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhh-hhccCcceeEEecCCCCCeEEeecccceEEeeec
Confidence            35677777776778888876    467899999998777 44443 4488899999999999999999999999999998


Q ss_pred             CCcce---eEEeecCCCCCcEEEEeCCCC-cEEEEecCCCCEEEeeec
Q 040370          184 LTAEK---VAKWSSNHIGAPRWIEHSPAE-AAFITCGTDRSVRFWKEI  227 (228)
Q Consensus       184 ~~~~~---~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~dg~i~vwd~~  227 (228)
                      +....   +... ..|...|..+.|..++ +.+.+-+..+...+|++.
T Consensus       196 ~~d~EeDaL~~v-iN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele  242 (376)
T KOG1188|consen  196 KKDNEEDALLHV-INHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELE  242 (376)
T ss_pred             CCCcchhhHHHh-hcccceeeeeeeecCCcceEEEEEccCceeEEEcc
Confidence            76532   2222 3677889999998876 457777888899999863

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.87  E-value=1e-19  Score=138.62  Aligned_cols=196  Identities=15%  Similarity=0.183  Sum_probs=136.0

Q ss_pred             EEEeecCcceEEEEEeCCCCEEEEecCC---CeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEe-cCCe
Q 040370           13 FRVIQDTHNVRSVSFHPSGDFLLAGTDH---PIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTAS-KDGA   88 (228)
Q Consensus        13 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~   88 (228)
                      ..+..|...+.+.+|+|+|+.|+.++.+   ..|++||+.+++.......     .+....++|+|+|+.|+.++ .+|.
T Consensus       197 ~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~-----~g~~~~~~wSPDG~~La~~~~~~g~  271 (429)
T PRK01742        197 FIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASF-----RGHNGAPAFSPDGSRLAFASSKDGV  271 (429)
T ss_pred             eEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecC-----CCccCceeECCCCCEEEEEEecCCc
Confidence            3445677889999999999999877543   4799999988764332211     22345689999999888764 6787


Q ss_pred             EEEE--eCCCCceeeEEecccccceeEEEEECCCCCEEEEee-CCCeEEEEEccCC-eeEEEEecceeeeeeeEEEECCC
Q 040370           89 IRLW--DGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCG-KDSTVKLWEVSSG-RLVKQYLGATHTQLRFQAVFNDT  164 (228)
Q Consensus        89 v~iw--d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~i~~wd~~~~-~~~~~~~~~~~~~~~~~~~~~~~  164 (228)
                      +.||  |+.+++. ..+..+  ...+....|+||++.|+.++ .++...+|++... .....+ .  +..  ....|+|+
T Consensus       272 ~~Iy~~d~~~~~~-~~lt~~--~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~--~~~--~~~~~SpD  343 (429)
T PRK01742        272 LNIYVMGANGGTP-SQLTSG--AGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-G--GRG--YSAQISAD  343 (429)
T ss_pred             EEEEEEECCCCCe-EeeccC--CCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-c--CCC--CCccCCCC
Confidence            6555  6655553 344433  45677899999999777554 5778888877542 222222 2  121  34679999


Q ss_pred             CcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeee
Q 040370          165 EEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKE  226 (228)
Q Consensus       165 ~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~  226 (228)
                      +++++..+.  ..+.+||+.+++..... ..+  ....+.|+|+|++|+.++.++.+.+|++
T Consensus       344 G~~ia~~~~--~~i~~~Dl~~g~~~~lt-~~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~  400 (429)
T PRK01742        344 GKTLVMING--DNVVKQDLTSGSTEVLS-STF--LDESPSISPNGIMIIYSSTQGLGKVLQL  400 (429)
T ss_pred             CCEEEEEcC--CCEEEEECCCCCeEEec-CCC--CCCCceECCCCCEEEEEEcCCCceEEEE
Confidence            999988765  34666999888754332 222  2356789999999999999999988875

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.87  E-value=5.9e-21  Score=128.61  Aligned_cols=146  Identities=12%  Similarity=0.177  Sum_probs=113.1

Q ss_pred             eEEEEecCCeEEEEeCCCCceeeEEec--------ccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCC--eeEEEEe
Q 040370           79 MYVTASKDGAIRLWDGVSANCVRSIVG--------AHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSG--RLVKQYL  148 (228)
Q Consensus        79 ~l~~~~~dg~v~iwd~~~~~~~~~~~~--------~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~--~~~~~~~  148 (228)
                      ++++|.++|.+.+||+.++..+..++.        ..+..++.++.+.+.-..=++|+.+..+..|.+...  .......
T Consensus       167 lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e  246 (323)
T KOG0322|consen  167 LLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKE  246 (323)
T ss_pred             EEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccce
Confidence            567888999999999998754433321        234788999999886666678888888999988643  2211111


Q ss_pred             cceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeee
Q 040370          149 GATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKE  226 (228)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~  226 (228)
                      .......+..+...|+++.++++|- |+.||+|..++.+++..+ .-|...|++++|+|+..++|++|.|++|.+|++
T Consensus       247 ~~lknpGv~gvrIRpD~KIlATAGW-D~RiRVyswrtl~pLAVL-kyHsagvn~vAfspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  247 ITLKNPGVSGVRIRPDGKILATAGW-DHRIRVYSWRTLNPLAVL-KYHSAGVNAVAFSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             EEecCCCccceEEccCCcEEeeccc-CCcEEEEEeccCCchhhh-hhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence            1113334566777888888777655 899999999999999988 789999999999999999999999999999997

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.87  E-value=3.3e-19  Score=119.11  Aligned_cols=206  Identities=16%  Similarity=0.228  Sum_probs=151.7

Q ss_pred             ceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceE------Eeeecccee---eeccceeeEEeCCCCCeE
Q 040370           10 KRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQC------YLSANVPEI---SVNGAINQVRYSSTGGMY   80 (228)
Q Consensus        10 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~------~~~~~~~~~---~~~~~i~~~~~~~~~~~l   80 (228)
                      .+.+...+|..+|..++|.  ..+|++|+ ||.|+=|.......      ......+..   ..-..|+++...|..+-+
T Consensus        53 ~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi  129 (325)
T KOG0649|consen   53 LKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSI  129 (325)
T ss_pred             cceeeccccCCCeeeeeee--hhheeecc-CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcE
Confidence            3455557899999999997  45677766 59999997654322      111111100   003468999999988878


Q ss_pred             EEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeee-----
Q 040370           81 VTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQL-----  155 (228)
Q Consensus        81 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-----  155 (228)
                      +.++.|+.++-||+++|+..+.+.+|  ...+.++.--.....+++|++||++|+||+++++.+..+....++..     
T Consensus       130 ~~AgGD~~~y~~dlE~G~i~r~~rGH--tDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~  207 (325)
T KOG0649|consen  130 LFAGGDGVIYQVDLEDGRIQREYRGH--TDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDW  207 (325)
T ss_pred             EEecCCeEEEEEEecCCEEEEEEcCC--cceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCccc
Confidence            88889999999999999999999987  78899998766666799999999999999999999888754332211     


Q ss_pred             -eeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeee
Q 040370          156 -RFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKE  226 (228)
Q Consensus       156 -~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~  226 (228)
                       ....+..-+..+++++++  ..+.+|.++..++...+  .-..++..+.|.  .+.++++|..+.|.-|.+
T Consensus       208 g~wigala~~edWlvCGgG--p~lslwhLrsse~t~vf--pipa~v~~v~F~--~d~vl~~G~g~~v~~~~l  273 (325)
T KOG0649|consen  208 GKWIGALAVNEDWLVCGGG--PKLSLWHLRSSESTCVF--PIPARVHLVDFV--DDCVLIGGEGNHVQSYTL  273 (325)
T ss_pred             CceeEEEeccCceEEecCC--CceeEEeccCCCceEEE--ecccceeEeeee--cceEEEeccccceeeeee
Confidence             112344556778888766  78999999999988887  345677788885  446777887777777654

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.87  E-value=9.8e-19  Score=129.38  Aligned_cols=221  Identities=15%  Similarity=0.204  Sum_probs=143.2

Q ss_pred             CcCCccccceeEEEeecCcceEEEEEeCCCCEEEEec-CCCeEEEEEccc-ceEEeeeccceeeeccceeeEEeCCCCCe
Q 040370            2 FDFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGT-DHPIAHLYDVNT-FQCYLSANVPEISVNGAINQVRYSSTGGM   79 (228)
Q Consensus         2 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~vw~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~   79 (228)
                      ||+.........+...+.+....++++|++++|++++ .++.|.+|+++. +..........   .+....++|+|++++
T Consensus        17 ~~~~~~g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~---~~~p~~i~~~~~g~~   93 (330)
T PRK11028         17 WNLNHEGALTLLQVVDVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPL---PGSPTHISTDHQGRF   93 (330)
T ss_pred             EEECCCCceeeeeEEecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecC---CCCceEEEECCCCCE
Confidence            5664322223344445566788899999999987664 578899999973 33221111111   334678999999998


Q ss_pred             EEEEec-CCeEEEEeCCCC-ceeeEEecccccceeEEEEECCCCCEEEEee-CCCeEEEEEccCCeeEEE-----Eecce
Q 040370           80 YVTASK-DGAIRLWDGVSA-NCVRSIVGAHGTAEATSANFTKDQRFVLSCG-KDSTVKLWEVSSGRLVKQ-----YLGAT  151 (228)
Q Consensus        80 l~~~~~-dg~v~iwd~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~i~~wd~~~~~~~~~-----~~~~~  151 (228)
                      +++++. ++.|.+|++++. .................++++|+++++++++ .++.|.+||+.+...+..     .... 
T Consensus        94 l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~-  172 (330)
T PRK11028         94 LFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTV-  172 (330)
T ss_pred             EEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecC-
Confidence            887764 889999998642 2211111111123457788999999886554 568999999976332211     1111 


Q ss_pred             eeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCC--cc--eeEEeec-----CCCCCcEEEEeCCCCcEEEEecC-CCCE
Q 040370          152 HTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALT--AE--KVAKWSS-----NHIGAPRWIEHSPAEAAFITCGT-DRSV  221 (228)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~--~~--~~~~~~~-----~~~~~v~~~~~~~~~~~l~s~~~-dg~i  221 (228)
                      .......+.|+|++++++++...++.|.+||+..  ++  ....+..     .+......+.++|++++|+++.. ++.|
T Consensus       173 ~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I  252 (330)
T PRK11028        173 EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLI  252 (330)
T ss_pred             CCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeE
Confidence            1233456899999999999887789999999973  22  2222211     11122346889999999988864 7899


Q ss_pred             EEeee
Q 040370          222 RFWKE  226 (228)
Q Consensus       222 ~vwd~  226 (228)
                      .+|++
T Consensus       253 ~v~~i  257 (330)
T PRK11028        253 SVFSV  257 (330)
T ss_pred             EEEEE
Confidence            99986

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.86  E-value=1.4e-20  Score=133.69  Aligned_cols=212  Identities=11%  Similarity=0.124  Sum_probs=162.2

Q ss_pred             EeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccce---EEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEE
Q 040370           15 VIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQ---CYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRL   91 (228)
Q Consensus        15 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~---~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i   91 (228)
                      +.+|.+-|+++.|+.++++|++|+.|..+++|+++..-   ..+.+.....+|.+.|.|++|....+++++|..+++|..
T Consensus        52 ~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~  131 (609)
T KOG4227|consen   52 VREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIK  131 (609)
T ss_pred             hhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEe
Confidence            45799999999999999999999999999999987532   112233334455789999999998999999999999999


Q ss_pred             EeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCe-eEEEEecceeeeeeeEEEECCCCcEEEE
Q 040370           92 WDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGR-LVKQYLGATHTQLRFQAVFNDTEEFVLS  170 (228)
Q Consensus        92 wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (228)
                      .|+++.+.+..+......+.|..+..+|..+.|++.+.++.|.+||.+..+ ....+.....+.....+.|+|....+++
T Consensus       132 HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~  211 (609)
T KOG4227|consen  132 HDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALIL  211 (609)
T ss_pred             eecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEE
Confidence            999999988887765557799999999999999999999999999998765 3333332334556678889999988888


Q ss_pred             eeCCCCeEEEEEcCCcceeEEeec---CC---CCCcEEEEeCCCCcEEEEecCCCCEEEeee
Q 040370          171 IDEPSNEIVIWDALTAEKVAKWSS---NH---IGAPRWIEHSPAEAAFITCGTDRSVRFWKE  226 (228)
Q Consensus       171 ~~~~d~~i~i~d~~~~~~~~~~~~---~~---~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~  226 (228)
                      +.+..+.+.+||.+..........   +-   ...-.++.|+|+|+.|++--.-..-.+||+
T Consensus       212 ~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~  273 (609)
T KOG4227|consen  212 VNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDF  273 (609)
T ss_pred             eccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeee
Confidence            887789999999987654221111   11   122356789999988877655444444443

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.86  E-value=3.2e-20  Score=131.75  Aligned_cols=193  Identities=18%  Similarity=0.270  Sum_probs=146.0

Q ss_pred             CcceEEEEEeCCCC-EEEEecCCCeEEEEEcccceEE-----eeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEE
Q 040370           19 THNVRSVSFHPSGD-FLLAGTDHPIAHLYDVNTFQCY-----LSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLW   92 (228)
Q Consensus        19 ~~~v~~~~~~~~~~-~l~~~~~d~~i~vw~~~~~~~~-----~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw   92 (228)
                      ..+|.++.|.++.. .+++|+.|..|++|.++.++..     ..+.....+|...|+++.|+|+|+.+++|+.+|.|.+|
T Consensus        13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lW   92 (434)
T KOG1009|consen   13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLW   92 (434)
T ss_pred             CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEE
Confidence            46899999999665 9999999999999998764321     22222233458999999999999999999999999999


Q ss_pred             eCC--------C-----C---ceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeee
Q 040370           93 DGV--------S-----A---NCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLR  156 (228)
Q Consensus        93 d~~--------~-----~---~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~  156 (228)
                      -..        +     .   ...+.+..  +...+..++|+|+++++++++.|..+++||+..|+....+..  |...+
T Consensus        93 k~~~~~~~~~d~e~~~~ke~w~v~k~lr~--h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~d--h~~yv  168 (434)
T KOG1009|consen   93 KQGDVRIFDADTEADLNKEKWVVKKVLRG--HRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDD--HEHYV  168 (434)
T ss_pred             EecCcCCccccchhhhCccceEEEEEecc--cccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccc--ccccc
Confidence            765        2     1   11222233  378899999999999999999999999999999999988876  77788


Q ss_pred             eEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEee---------c---------CCCC----CcEEEEeCCCCcEEEE
Q 040370          157 FQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWS---------S---------NHIG----APRWIEHSPAEAAFIT  214 (228)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~---------~---------~~~~----~v~~~~~~~~~~~l~s  214 (228)
                      ..++|.|.+.++++-+. |...+.+.+...+......         .         -|..    -...++|+|+|.+|++
T Consensus       169 qgvawDpl~qyv~s~s~-dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvt  247 (434)
T KOG1009|consen  169 QGVAWDPLNQYVASKSS-DRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVT  247 (434)
T ss_pred             ceeecchhhhhhhhhcc-CcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEc
Confidence            99999999999988766 5766666654433222211         0         0111    2345789999999988


Q ss_pred             ec
Q 040370          215 CG  216 (228)
Q Consensus       215 ~~  216 (228)
                      .+
T Consensus       248 Pa  249 (434)
T KOG1009|consen  248 PA  249 (434)
T ss_pred             cc
Confidence            64

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.85  E-value=1.7e-21  Score=140.45  Aligned_cols=196  Identities=16%  Similarity=0.208  Sum_probs=167.8

Q ss_pred             CcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCCCc
Q 040370           19 THNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSAN   98 (228)
Q Consensus        19 ~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~   98 (228)
                      ...-..+.++.+|.+++.|+..|.|..+|..++.....+..     ...|.++.|-.+.+++|++ ....+.||| +.|.
T Consensus       129 eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v-----~Etv~Dv~~LHneq~~AVA-QK~y~yvYD-~~Gt  201 (545)
T KOG1272|consen  129 EFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINV-----METVRDVTFLHNEQFFAVA-QKKYVYVYD-NNGT  201 (545)
T ss_pred             ccCCeeeeecCCccEEEecCCccceeeeecccceeeeeeeh-----hhhhhhhhhhcchHHHHhh-hhceEEEec-CCCc
Confidence            34557788999999999999999999999999887766654     6789999999888877766 457899999 5788


Q ss_pred             eeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCCeE
Q 040370           99 CVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEI  178 (228)
Q Consensus        99 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i  178 (228)
                      .+..+..   ...+..+.|-|..-+|++++..|.++.-|+.+|+.+..+..  .......+.-+|-+..+-.+.+ +|+|
T Consensus       202 ElHClk~---~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t--~~G~~~vm~qNP~NaVih~Ghs-nGtV  275 (545)
T KOG1272|consen  202 ELHCLKR---HIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRT--GAGRTDVMKQNPYNAVIHLGHS-NGTV  275 (545)
T ss_pred             EEeehhh---cCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHc--cCCccchhhcCCccceEEEcCC-CceE
Confidence            8888877   45789999999999999999999999999999999888765  4445566677777776666555 7999


Q ss_pred             EEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeeecC
Q 040370          179 VIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEIL  228 (228)
Q Consensus       179 ~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~l  228 (228)
                      .+|.....+++..+ ..|.++|.+|++.++|+|++|+|.|..++|||+++
T Consensus       276 SlWSP~skePLvKi-LcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~  324 (545)
T KOG1272|consen  276 SLWSPNSKEPLVKI-LCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRN  324 (545)
T ss_pred             EecCCCCcchHHHH-HhcCCCcceEEECCCCcEEeecccccceeEeeecc
Confidence            99999999988888 68999999999999999999999999999999974

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.85  E-value=2.3e-19  Score=124.03  Aligned_cols=205  Identities=11%  Similarity=0.114  Sum_probs=159.0

Q ss_pred             cCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCC-C
Q 040370           18 DTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGV-S   96 (228)
Q Consensus        18 ~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~-~   96 (228)
                      -..+|+|.+|++|+..+|.+.++..|.||.....+..........| ...|+.++|+|..+.|++|+.|..-++|... .
T Consensus         9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~H-d~~vtgvdWap~snrIvtcs~drnayVw~~~~~   87 (361)
T KOG1523|consen    9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEH-DKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSG   87 (361)
T ss_pred             ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhh-CcceeEEeecCCCCceeEccCCCCccccccCCC
Confidence            4679999999999999999999999999999887755555555555 8899999999999999999999999999984 3


Q ss_pred             CceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCee--EEEEecceeeeeeeEEEECCCCcEEEEeeCC
Q 040370           97 ANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRL--VKQYLGATHTQLRFQAVFNDTEEFVLSIDEP  174 (228)
Q Consensus        97 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (228)
                      ++-..++.........+++.|+|.++.+++|+..+.|.||-++..+-  +.+.........+.++.|+|++-.+++++. 
T Consensus        88 ~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~-  166 (361)
T KOG1523|consen   88 GTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGST-  166 (361)
T ss_pred             CeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceeccccc-
Confidence            43333332222267889999999999999999999999998865432  222223336678899999999887777554 


Q ss_pred             CCeEEEEEcC-----C-------------cceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEee
Q 040370          175 SNEIVIWDAL-----T-------------AEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWK  225 (228)
Q Consensus       175 d~~i~i~d~~-----~-------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd  225 (228)
                      |+..+++..-     .             |+...++ ....+.+..+.|+|+|..|+-.+.|..+.+=|
T Consensus       167 D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~-~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~d  234 (361)
T KOG1523|consen  167 DGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEA-SSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVD  234 (361)
T ss_pred             CcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhh-ccCCCceeeeEeCCCCCEeeEecCCCceEEee
Confidence            8999998531     1             1122222 24567899999999999999999999988765

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.85  E-value=1.3e-19  Score=128.50  Aligned_cols=192  Identities=13%  Similarity=0.218  Sum_probs=149.5

Q ss_pred             ceeEEEeecCcceEEEEEeC-CCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCe
Q 040370           10 KRAFRVIQDTHNVRSVSFHP-SGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGA   88 (228)
Q Consensus        10 ~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~   88 (228)
                      .+...+.+|...|.-++|+| -.+.|++++.|..|.+||+.+++....+.     |...|.++.|+.+|.+|+|.+.|..
T Consensus       122 epvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~-----hpd~i~S~sfn~dGs~l~TtckDKk  196 (472)
T KOG0303|consen  122 EPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLD-----HPDMVYSMSFNRDGSLLCTTCKDKK  196 (472)
T ss_pred             cceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCceeeecC-----CCCeEEEEEeccCCceeeeecccce
Confidence            45677889999999999999 46788899999999999999999766654     3889999999999999999999999


Q ss_pred             EEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEee---CCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCC
Q 040370           89 IRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCG---KDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTE  165 (228)
Q Consensus        89 v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~---~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (228)
                      |+|||.++++.+..-..|. +..-....|-.++..+-||-   .+..+.+||..+.+....+..-.....+.-..+.++.
T Consensus       197 vRv~dpr~~~~v~e~~~he-G~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt  275 (472)
T KOG0303|consen  197 VRVIDPRRGTVVSEGVAHE-GAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDT  275 (472)
T ss_pred             eEEEcCCCCcEeeeccccc-CCCcceeEEeccCceeeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCC
Confidence            9999999999998886665 44445555777888444442   5678999998876655444444456667778889999


Q ss_pred             cEEEEeeCCCCeEEEEEcCCcceeEEeec--CCCCCcEEEEeCC
Q 040370          166 EFVLSIDEPSNEIVIWDALTAEKVAKWSS--NHIGAPRWIEHSP  207 (228)
Q Consensus       166 ~~~~~~~~~d~~i~i~d~~~~~~~~~~~~--~~~~~v~~~~~~~  207 (228)
                      ..+..+|..|+.|+-|.+.+..+...+..  ....+-..+.|-|
T Consensus       276 ~ivYl~GKGD~~IRYyEit~d~P~~hyln~f~S~epQRG~g~mP  319 (472)
T KOG0303|consen  276 SIVYLCGKGDSSIRYFEITNEPPFVHYLNTFSSKEPQRGMGFMP  319 (472)
T ss_pred             CEEEEEecCCcceEEEEecCCCceeEEecccccCCccccccccc
Confidence            99999999999999999987765443322  2233445555555

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.85  E-value=4.9e-18  Score=129.19  Aligned_cols=197  Identities=22%  Similarity=0.452  Sum_probs=154.0

Q ss_pred             cceEEEEE-eCCCC-EEEEecC-CCeEEEEEccc-ceEEeeeccceeeeccceeeEEeCCCCCeEEEEec-CCeEEEEeC
Q 040370           20 HNVRSVSF-HPSGD-FLLAGTD-HPIAHLYDVNT-FQCYLSANVPEISVNGAINQVRYSSTGGMYVTASK-DGAIRLWDG   94 (228)
Q Consensus        20 ~~v~~~~~-~~~~~-~l~~~~~-d~~i~vw~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~v~iwd~   94 (228)
                      ..+..+.+ ++++. .++..+. |+.+.+|+... .........+    ...|..++|+|++..+++++. |+.+++|++
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (466)
T COG2319         110 SSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGH----SESVTSLAFSPDGKLLASGSSLDGTIKLWDL  185 (466)
T ss_pred             CceeeEEEECCCcceEEeccCCCCccEEEEEecCCCeEEEEEecC----cccEEEEEECCCCCEEEecCCCCCceEEEEc
Confidence            36777777 78777 5555444 99999999987 4444433332    678889999999998888886 999999999


Q ss_pred             CCCceeeEEecccccceeEEEEECCCCC-EEEEeeCCCeEEEEEccCCeeEE-EEecceeeeeeeEEEECCCCcEEEEee
Q 040370           95 VSANCVRSIVGAHGTAEATSANFTKDQR-FVLSCGKDSTVKLWEVSSGRLVK-QYLGATHTQLRFQAVFNDTEEFVLSID  172 (228)
Q Consensus        95 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~~wd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (228)
                      ..+.....+..+  ...+.+++|+|++. .+++++.|+.|++||...+.... .+..+  .... ...|++++.+++ ++
T Consensus       186 ~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~-~~  259 (466)
T COG2319         186 RTGKPLSTLAGH--TDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGH--SDSV-VSSFSPDGSLLA-SG  259 (466)
T ss_pred             CCCceEEeeccC--CCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCC--Ccce-eEeECCCCCEEE-Ee
Confidence            987777777764  78999999999988 55555999999999988777766 45553  3332 227889986666 45


Q ss_pred             CCCCeEEEEEcCCcce-eEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370          173 EPSNEIVIWDALTAEK-VAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEI  227 (228)
Q Consensus       173 ~~d~~i~i~d~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~  227 (228)
                      +.|+.+++|+.+.... .... ..|...+.++.|.|++..+++++.|+.+++|+..
T Consensus       260 ~~d~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~  314 (466)
T COG2319         260 SSDGTIRLWDLRSSSSLLRTL-SGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLE  314 (466)
T ss_pred             cCCCcEEEeeecCCCcEEEEE-ecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcC
Confidence            5589999999987775 4444 6788999999999988888889999999999764

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.85  E-value=1.4e-19  Score=123.70  Aligned_cols=201  Identities=12%  Similarity=0.197  Sum_probs=153.4

Q ss_pred             ecCcceEEEEEeC-CCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCC-CeEEEEecCCeEEEEeC
Q 040370           17 QDTHNVRSVSFHP-SGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTG-GMYVTASKDGAIRLWDG   94 (228)
Q Consensus        17 ~~~~~v~~~~~~~-~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~v~iwd~   94 (228)
                      .+..++++..|+. +-+++.+++-|-+..|||++++.. ...+.....|...|..++|...+ +.|++.+.||.|++||+
T Consensus       148 ~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~-~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDL  226 (364)
T KOG0290|consen  148 EFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVS-GTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDL  226 (364)
T ss_pred             ccCCcccccccccCCcceeEeecccCeEEEEEEeeccc-cceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEe
Confidence            4678999999998 788999999999999999999732 11222234458999999999854 48999999999999999


Q ss_pred             CCCceeeEEecccc-cceeEEEEECC-CCCEEEEeeCCC-eEEEEEccCCe-eEEEEecceeeeeeeEEEECCCCcEEEE
Q 040370           95 VSANCVRSIVGAHG-TAEATSANFTK-DQRFVLSCGKDS-TVKLWEVSSGR-LVKQYLGATHTQLRFQAVFNDTEEFVLS  170 (228)
Q Consensus        95 ~~~~~~~~~~~~~~-~~~i~~~~~~~-~~~~l~~~~~d~-~i~~wd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (228)
                      +..+....+..... ..+...++|++ |-+++|+-..|. .|.+.|+|... ++..+++  |...+..++|.|.....++
T Consensus       227 R~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~--H~a~VNgIaWaPhS~~hic  304 (364)
T KOG0290|consen  227 RSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRN--HQASVNGIAWAPHSSSHIC  304 (364)
T ss_pred             cccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhc--CcccccceEecCCCCceee
Confidence            98776655544332 56788899998 567788766654 69999999753 4566666  7888999999999998888


Q ss_pred             eeCCCCeEEEEEcCCcce------eEEeecCCCCCcEEEEeCC-CCcEEEEecCCCCEEE
Q 040370          171 IDEPSNEIVIWDALTAEK------VAKWSSNHIGAPRWIEHSP-AEAAFITCGTDRSVRF  223 (228)
Q Consensus       171 ~~~~d~~i~i~d~~~~~~------~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~v  223 (228)
                      ++++|....+||+.+...      +...  ...+.|+.++|++ .+..++.+.. +.+.+
T Consensus       305 taGDD~qaliWDl~q~~~~~~~dPilay--~a~~EVNqi~Ws~~~~Dwiai~~~-kklei  361 (364)
T KOG0290|consen  305 TAGDDCQALIWDLQQMPRENGEDPILAY--TAGGEVNQIQWSSSQPDWIAICFG-KKLEI  361 (364)
T ss_pred             ecCCcceEEEEecccccccCCCCchhhh--hccceeeeeeecccCCCEEEEEec-CeeeE
Confidence            888899999999975433      1122  3567899999997 5667776653 34433

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.84  E-value=6.4e-20  Score=135.25  Aligned_cols=211  Identities=13%  Similarity=0.185  Sum_probs=152.6

Q ss_pred             eEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCC--CCCeEEEEecCCeE
Q 040370           12 AFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSS--TGGMYVTASKDGAI   89 (228)
Q Consensus        12 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~~dg~v   89 (228)
                      ..++.+|++-|+|++|+.+|.+|++|++|-.+.|||.-..+.+..+..  +| ...|.++.|-|  ..+.+++|..|..|
T Consensus        43 E~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~T--gH-taNIFsvKFvP~tnnriv~sgAgDk~i  119 (758)
T KOG1310|consen   43 EAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSIST--GH-TANIFSVKFVPYTNNRIVLSGAGDKLI  119 (758)
T ss_pred             hhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeec--cc-ccceeEEeeeccCCCeEEEeccCcceE
Confidence            445679999999999999999999999999999999987666555443  44 88999999999  45689999999999


Q ss_pred             EEEeCCCC----------ceeeEEecccccceeEEEEECCCC-CEEEEeeCCCeEEEEEccCCeeEEEEe--------cc
Q 040370           90 RLWDGVSA----------NCVRSIVGAHGTAEATSANFTKDQ-RFVLSCGKDSTVKLWEVSSGRLVKQYL--------GA  150 (228)
Q Consensus        90 ~iwd~~~~----------~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~~wd~~~~~~~~~~~--------~~  150 (228)
                      +++|+...          +....+..|  ...|..++-.|++ ..+.++++||+|+-+|++.......-.        ..
T Consensus       120 ~lfdl~~~~~~~~d~~~~~~~~~~~ch--t~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~  197 (758)
T KOG1310|consen  120 KLFDLDSSKEGGMDHGMEETTRCWSCH--TDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYN  197 (758)
T ss_pred             EEEecccccccccccCccchhhhhhhh--hhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhc
Confidence            99999742          233334444  6788889999987 789999999999999998743211100        00


Q ss_pred             eeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcc------------------eeEEeecCCC-----------CCcE
Q 040370          151 THTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAE------------------KVAKWSSNHI-----------GAPR  201 (228)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~------------------~~~~~~~~~~-----------~~v~  201 (228)
                      ..-....++..+|...+.++.|+.|.-.++||.+...                  ++..+..+|.           ..++
T Consensus       198 ~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t  277 (758)
T KOG1310|consen  198 PQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCT  277 (758)
T ss_pred             hhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeE
Confidence            1123346788899998888888889999999943211                  1222222332           1145


Q ss_pred             EEEeCCCCcEEEEecCCCCEEEeeec
Q 040370          202 WIEHSPAEAAFITCGTDRSVRFWKEI  227 (228)
Q Consensus       202 ~~~~~~~~~~l~s~~~dg~i~vwd~~  227 (228)
                      -+.|+|+|.-|+..=....|.++|+.
T Consensus       278 ~vtfnpNGtElLvs~~gEhVYlfdvn  303 (758)
T KOG1310|consen  278 YVTFNPNGTELLVSWGGEHVYLFDVN  303 (758)
T ss_pred             EEEECCCCcEEEEeeCCeEEEEEeec
Confidence            57899998766554444568888863

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.83  E-value=1.9e-19  Score=132.20  Aligned_cols=172  Identities=14%  Similarity=0.241  Sum_probs=129.8

Q ss_pred             CCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCC-CCeEEEEecCCeEEEEeCCC-----------
Q 040370           29 PSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSST-GGMYVTASKDGAIRLWDGVS-----------   96 (228)
Q Consensus        29 ~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~v~iwd~~~-----------   96 (228)
                      |.+--++.|-.-|.|.+.|....+..+.+.....-.+..++|+.|-|. ...++.+-.+|.+.++|.+.           
T Consensus       183 ~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~  262 (636)
T KOG2394|consen  183 PKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQA  262 (636)
T ss_pred             CCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccc
Confidence            456677888888999999877633222122111111578999999994 45677788899999997532           


Q ss_pred             ---Cc--------------eeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEE
Q 040370           97 ---AN--------------CVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQA  159 (228)
Q Consensus        97 ---~~--------------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~  159 (228)
                         +.              ++..+.  .....|..++|+|||++||+.++||.+||+|..+.+++..++.  --....++
T Consensus       263 ~k~~~~f~i~t~ksk~~rNPv~~w~--~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkS--YFGGLLCv  338 (636)
T KOG2394|consen  263 LKDGDQFAILTSKSKKTRNPVARWH--IGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKS--YFGGLLCV  338 (636)
T ss_pred             cCCCCeeEEeeeeccccCCccceeE--eccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHh--hccceEEE
Confidence               11              111111  1245788999999999999999999999999998877665543  44567899


Q ss_pred             EECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeC
Q 040370          160 VFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHS  206 (228)
Q Consensus       160 ~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~  206 (228)
                      +|+||++|++++|. |.-|.||.+...+.+..- .+|.+.|+.++|.
T Consensus       339 cWSPDGKyIvtGGE-DDLVtVwSf~erRVVARG-qGHkSWVs~VaFD  383 (636)
T KOG2394|consen  339 CWSPDGKYIVTGGE-DDLVTVWSFEERRVVARG-QGHKSWVSVVAFD  383 (636)
T ss_pred             EEcCCccEEEecCC-cceEEEEEeccceEEEec-cccccceeeEeec
Confidence            99999999999766 799999999988888877 7999999999998

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.83  E-value=1.7e-18  Score=115.77  Aligned_cols=198  Identities=18%  Similarity=0.285  Sum_probs=141.2

Q ss_pred             ceEEEEEeCCCCEEEEecCCCeEEEEEcccceEE------eeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeC
Q 040370           21 NVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCY------LSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDG   94 (228)
Q Consensus        21 ~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~   94 (228)
                      .|.+-+++|.+++|++|..+|.|.+..+++-..-      +....+...|.++|+.++|.  ..+|++|+ ||.|+-|..
T Consensus        12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~W   88 (325)
T KOG0649|consen   12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWEW   88 (325)
T ss_pred             HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEeee
Confidence            4666789999999999999999999998642110      01111213348999999998  44677766 599999976


Q ss_pred             CCCce------eeEEec-----ccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECC
Q 040370           95 VSANC------VRSIVG-----AHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFND  163 (228)
Q Consensus        95 ~~~~~------~~~~~~-----~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (228)
                      +....      +.+...     ...-..|+++...|..+-++.++.|+.++-||+++|+..+.+++  |...+.++.-..
T Consensus        89 ~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rG--HtDYvH~vv~R~  166 (325)
T KOG0649|consen   89 NEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRG--HTDYVHSVVGRN  166 (325)
T ss_pred             hhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcC--Ccceeeeeeecc
Confidence            54321      111111     11134689999999887788888999999999999999999998  778888888766


Q ss_pred             CCcEEEEeeCCCCeEEEEEcCCcceeEEeec--------CCCC-CcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370          164 TEEFVLSIDEPSNEIVIWDALTAEKVAKWSS--------NHIG-APRWIEHSPAEAAFITCGTDRSVRFWKEI  227 (228)
Q Consensus       164 ~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~--------~~~~-~v~~~~~~~~~~~l~s~~~dg~i~vwd~~  227 (228)
                      ....+++++ +||++|+||.++++.+..+..        .|.+ .|-+++-  +..+|++|+ ...+.+|.++
T Consensus       167 ~~~qilsG~-EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGg-Gp~lslwhLr  235 (325)
T KOG0649|consen  167 ANGQILSGA-EDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGG-GPKLSLWHLR  235 (325)
T ss_pred             cCcceeecC-CCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCceEEecC-CCceeEEecc
Confidence            666777754 589999999999998877632        1222 2444444  556777665 4568899875

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.83  E-value=2.9e-17  Score=124.96  Aligned_cols=206  Identities=22%  Similarity=0.456  Sum_probs=164.4

Q ss_pred             EEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccce-EEeeeccceeeeccceeeEEe-CCCCC-eEEEEec-CCeE
Q 040370           14 RVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQ-CYLSANVPEISVNGAINQVRY-SSTGG-MYVTASK-DGAI   89 (228)
Q Consensus        14 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~-~~~~~~~~~~~~~~~i~~~~~-~~~~~-~l~~~~~-dg~v   89 (228)
                      ....|...+.++.+.+.+..++.++.|+.+.+|+...+. ....+....   ...+..+.+ ++++. .++..+. |+.+
T Consensus        60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~d~~~  136 (466)
T COG2319          60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLH---DSSVSKLALSSPDGNSILLASSSLDGTV  136 (466)
T ss_pred             eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccC---CCceeeEEEECCCcceEEeccCCCCccE
Confidence            345789999999999999999999999999999998876 333333211   135666666 77777 5555444 9999


Q ss_pred             EEEeCCC-CceeeEEecccccceeEEEEECCCCCEEEEeeC-CCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcE
Q 040370           90 RLWDGVS-ANCVRSIVGAHGTAEATSANFTKDQRFVLSCGK-DSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEF  167 (228)
Q Consensus        90 ~iwd~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (228)
                      .+||... ......+..+  ...+..++|+|++..+++++. |+.+++|++..+..+..+..  +...+..+.++|++..
T Consensus       137 ~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~  212 (466)
T COG2319         137 KLWDLSTPGKLIRTLEGH--SESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAG--HTDPVSSLAFSPDGGL  212 (466)
T ss_pred             EEEEecCCCeEEEEEecC--cccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeecc--CCCceEEEEEcCCcce
Confidence            9999987 6667777665  678889999999998888886 99999999998777777766  6778889999999886


Q ss_pred             EEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370          168 VLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEI  227 (228)
Q Consensus       168 ~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~  227 (228)
                      ++++++.|+.+++||...+.........|.... -..|+|++.++++++.|+.+++|++.
T Consensus       213 ~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~  271 (466)
T COG2319         213 LIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLR  271 (466)
T ss_pred             EEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeec
Confidence            666556689999999887777763336777765 44899999899999999999999975

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.83  E-value=4.8e-19  Score=131.71  Aligned_cols=201  Identities=12%  Similarity=0.238  Sum_probs=160.2

Q ss_pred             EEEeecCcceEEEEEeCCCCEEEEecC---CCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeE
Q 040370           13 FRVIQDTHNVRSVSFHPSGDFLLAGTD---HPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAI   89 (228)
Q Consensus        13 ~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v   89 (228)
                      ...+.|..+|+.+.|+..|+||++...   ...|.|+++........+...    .+.|.++.|+|...+|+.++. ..|
T Consensus       515 ~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~ks----kG~vq~v~FHPs~p~lfVaTq-~~v  589 (733)
T KOG0650|consen  515 CIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKS----KGLVQRVKFHPSKPYLFVATQ-RSV  589 (733)
T ss_pred             EEEEecCCccceeeeecCCceEEEeccCCCcceEEEEecccccccCchhhc----CCceeEEEecCCCceEEEEec-cce
Confidence            455689999999999999999998654   457889999887655444333    677999999999888888876 689


Q ss_pred             EEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCe-eEEEEecceeeeeeeEEEECCCCcEE
Q 040370           90 RLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGR-LVKQYLGATHTQLRFQAVFNDTEEFV  168 (228)
Q Consensus        90 ~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (228)
                      +|||+..++.++++...  ...|..++.+|.|..|+.|+.|+.+..+|+.-+. +.+++..  |...+..++|++.-..+
T Consensus       590 RiYdL~kqelvKkL~tg--~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~--H~~avr~Va~H~ryPLf  665 (733)
T KOG0650|consen  590 RIYDLSKQELVKKLLTG--SKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRL--HEKAVRSVAFHKRYPLF  665 (733)
T ss_pred             EEEehhHHHHHHHHhcC--CeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhh--hhhhhhhhhhcccccee
Confidence            99999988888777664  6789999999999999999999999999997553 4444544  77888999999877766


Q ss_pred             EEeeCCCCeEEEEEcC------Ccc---eeEEeecCCCCC----cEEEEeCCCCcEEEEecCCCCEEEe
Q 040370          169 LSIDEPSNEIVIWDAL------TAE---KVAKWSSNHIGA----PRWIEHSPAEAAFITCGTDRSVRFW  224 (228)
Q Consensus       169 ~~~~~~d~~i~i~d~~------~~~---~~~~~~~~~~~~----v~~~~~~~~~~~l~s~~~dg~i~vw  224 (228)
                      ++ ++.||++.|+--.      ...   ++..+ .+|...    |..+.|+|...+|+++|.||+|++|
T Consensus       666 as-~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L-~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf  732 (733)
T KOG0650|consen  666 AS-GSDDGTVIVFHGMVYNDLLQNPLIVPLKRL-RGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF  732 (733)
T ss_pred             ee-ecCCCcEEEEeeeeehhhhcCCceEeeeec-cCceeecccceEeecccCCCceEEecCCCceEEee
Confidence            65 5668999988422      221   12223 577654    8889999999999999999999998

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.83  E-value=8.1e-19  Score=121.74  Aligned_cols=204  Identities=16%  Similarity=0.243  Sum_probs=154.3

Q ss_pred             ecCcceEEEEEeC-----CCCEEEEecCCCeEEEEEcccceEEeeeccc-eeeeccceeeEEeCCC----CCeEEEEecC
Q 040370           17 QDTHNVRSVSFHP-----SGDFLLAGTDHPIAHLYDVNTFQCYLSANVP-EISVNGAINQVRYSST----GGMYVTASKD   86 (228)
Q Consensus        17 ~~~~~v~~~~~~~-----~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~----~~~l~~~~~d   86 (228)
                      .|+.+|..++|++     +...+|+++. ..+.+|..........++.. ...+......++|+-+    ..+++.|+.-
T Consensus        36 d~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G~~  114 (385)
T KOG1034|consen   36 DHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGGYL  114 (385)
T ss_pred             cCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeecce
Confidence            5778999999986     3345666665 46889987654322222211 1112566777777643    3478889999


Q ss_pred             CeEEEEeCCCCceeeEEecccccceeEEEEECCC-CCEEEEeeCCCeEEEEEccCCeeEEEEecc-eeeeeeeEEEECCC
Q 040370           87 GAIRLWDGVSANCVRSIVGAHGTAEATSANFTKD-QRFVLSCGKDSTVKLWEVSSGRLVKQYLGA-THTQLRFQAVFNDT  164 (228)
Q Consensus        87 g~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~-~~~~~~~~~~~~~~  164 (228)
                      |.|+|.|+.+++....+.+|  +..|+.+.++|+ .+++++++.|..|++|++++..++..+-+. .|...+.++.|+++
T Consensus       115 GvIrVid~~~~~~~~~~~gh--G~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~  192 (385)
T KOG1034|consen  115 GVIRVIDVVSGQCSKNYRGH--GGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLD  192 (385)
T ss_pred             eEEEEEecchhhhccceecc--CccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCC
Confidence            99999999999999999887  789999999995 578999999999999999999999888542 37788999999999


Q ss_pred             CcEEEEeeCCCCeEEEEEcCCcceeEE---------------------------eecCCCCCcEEEEeCCCCcEEEEecC
Q 040370          165 EEFVLSIDEPSNEIVIWDALTAEKVAK---------------------------WSSNHIGAPRWIEHSPAEAAFITCGT  217 (228)
Q Consensus       165 ~~~~~~~~~~d~~i~i~d~~~~~~~~~---------------------------~~~~~~~~v~~~~~~~~~~~l~s~~~  217 (228)
                      +.+++++|. |.++++|++...+....                           ...-|...|-|+.|-  |+++++=|-
T Consensus       193 gd~i~ScGm-Dhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilSksc  269 (385)
T KOG1034|consen  193 GDRIASCGM-DHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSKSC  269 (385)
T ss_pred             CCeeeccCC-cceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hhheeeccc
Confidence            999888766 89999999973321100                           112466677777774  578999999


Q ss_pred             CCCEEEeee
Q 040370          218 DRSVRFWKE  226 (228)
Q Consensus       218 dg~i~vwd~  226 (228)
                      ++.|..|..
T Consensus       270 enaI~~w~p  278 (385)
T KOG1034|consen  270 ENAIVCWKP  278 (385)
T ss_pred             CceEEEEec
Confidence            999999975

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.82  E-value=2.4e-17  Score=125.54  Aligned_cols=197  Identities=14%  Similarity=0.100  Sum_probs=133.6

Q ss_pred             EeecCcceEEEEEeCCCCEEEEec---CCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEE-ecCC--e
Q 040370           15 VIQDTHNVRSVSFHPSGDFLLAGT---DHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTA-SKDG--A   88 (228)
Q Consensus        15 ~~~~~~~v~~~~~~~~~~~l~~~~---~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg--~   88 (228)
                      +..+...+.+.+|+|||+.|+..+   .+..|.+|++.+++.......     .+.+....|+|+|+.|+.. +.+|  .
T Consensus       194 lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~-----~~~~~~~~~SPDG~~La~~~~~~g~~~  268 (429)
T PRK03629        194 VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASF-----PRHNGAPAFSPDGSKLAFALSKTGSLN  268 (429)
T ss_pred             eecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCC-----CCCcCCeEECCCCCEEEEEEcCCCCcE
Confidence            345667899999999999998653   345799999988764433222     2335568999999988754 4455  5


Q ss_pred             EEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCC-C--eEEEEEccCCeeEEEEecceeeeeeeEEEECCCC
Q 040370           89 IRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKD-S--TVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTE  165 (228)
Q Consensus        89 v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-~--~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (228)
                      |.+||+.+++..+....   ...+....|+||++.|+..+.+ +  .|+++|+.+++.. .+..  .........|+|++
T Consensus       269 I~~~d~~tg~~~~lt~~---~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt~--~~~~~~~~~~SpDG  342 (429)
T PRK03629        269 LYVMDLASGQIRQVTDG---RSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ-RITW--EGSQNQDADVSSDG  342 (429)
T ss_pred             EEEEECCCCCEEEccCC---CCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE-Eeec--CCCCccCEEECCCC
Confidence            88999988765443322   3456789999999988776654 3  4555577665433 3322  22234567899999


Q ss_pred             cEEEEeeCCC--CeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCC---EEEee
Q 040370          166 EFVLSIDEPS--NEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRS---VRFWK  225 (228)
Q Consensus       166 ~~~~~~~~~d--~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~---i~vwd  225 (228)
                      ++++..+..+  ..|.+||+.+++... +...  .......|+|||+.|+.++.++.   +.+++
T Consensus       343 ~~Ia~~~~~~g~~~I~~~dl~~g~~~~-Lt~~--~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~  404 (429)
T PRK03629        343 KFMVMVSSNGGQQHIAKQDLATGGVQV-LTDT--FLDETPSIAPNGTMVIYSSSQGMGSVLNLVS  404 (429)
T ss_pred             CEEEEEEccCCCceEEEEECCCCCeEE-eCCC--CCCCCceECCCCCEEEEEEcCCCceEEEEEE
Confidence            9988766543  458889998776443 3122  22346789999999999888775   44444

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.82  E-value=8.9e-18  Score=114.00  Aligned_cols=157  Identities=18%  Similarity=0.327  Sum_probs=113.8

Q ss_pred             EEEEEeCCCCEEEEecC----------CCeEEEEEcccc-eEEeeeccceeeeccceeeEEeCCCCCeEEEE--ecCCeE
Q 040370           23 RSVSFHPSGDFLLAGTD----------HPIAHLYDVNTF-QCYLSANVPEISVNGAINQVRYSSTGGMYVTA--SKDGAI   89 (228)
Q Consensus        23 ~~~~~~~~~~~l~~~~~----------d~~i~vw~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~~dg~v   89 (228)
                      ..+.|+|+|++|++-..          -+...+|.++.. .........   ..++|.+++|+|+|+.|++.  ..++.|
T Consensus         9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~---~~~~I~~~~WsP~g~~favi~g~~~~~v   85 (194)
T PF08662_consen    9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELK---KEGPIHDVAWSPNGNEFAVIYGSMPAKV   85 (194)
T ss_pred             EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeecc---CCCceEEEEECcCCCEEEEEEccCCccc
Confidence            45789999998875332          234556665332 222222221   14579999999999987654  456799


Q ss_pred             EEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCC---CeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCc
Q 040370           90 RLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKD---STVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEE  166 (228)
Q Consensus        90 ~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (228)
                      .+||++ ++.+..+.    ...+..+.|+|+|+++++++.+   |.+.+||+++.+.+.....    .....+.|+|+|+
T Consensus        86 ~lyd~~-~~~i~~~~----~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~----~~~t~~~WsPdGr  156 (194)
T PF08662_consen   86 TLYDVK-GKKIFSFG----TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEH----SDATDVEWSPDGR  156 (194)
T ss_pred             EEEcCc-ccEeEeec----CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeecccc----CcEEEEEEcCCCC
Confidence            999996 66565553    3466889999999999998754   6799999998888777642    2357899999999


Q ss_pred             EEEEeeCC-----CCeEEEEEcCCcceeEEe
Q 040370          167 FVLSIDEP-----SNEIVIWDALTAEKVAKW  192 (228)
Q Consensus       167 ~~~~~~~~-----d~~i~i~d~~~~~~~~~~  192 (228)
                      +++++...     |+.++||+. +|+.+...
T Consensus       157 ~~~ta~t~~r~~~dng~~Iw~~-~G~~l~~~  186 (194)
T PF08662_consen  157 YLATATTSPRLRVDNGFKIWSF-QGRLLYKK  186 (194)
T ss_pred             EEEEEEeccceeccccEEEEEe-cCeEeEec
Confidence            99998764     789999997 46666554

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.82  E-value=8.2e-19  Score=129.17  Aligned_cols=182  Identities=14%  Similarity=0.163  Sum_probs=142.2

Q ss_pred             eecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCC
Q 040370           16 IQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGV   95 (228)
Q Consensus        16 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~   95 (228)
                      ..|.+.+.+-.|+|+|.-|+++++||.|++|.-.. -........    ..+|.|++|.|+.+.++-|. .+.+.|=.+.
T Consensus       101 ~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsG-MLRStl~Q~----~~~v~c~~W~p~S~~vl~c~-g~h~~IKpL~  174 (737)
T KOG1524|consen  101 SAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSG-MLRSTVVQN----EESIRCARWAPNSNSIVFCQ-GGHISIKPLA  174 (737)
T ss_pred             hhhhhhhhhcccCCCCceeeeecCCceEEEEeccc-hHHHHHhhc----CceeEEEEECCCCCceEEec-CCeEEEeecc
Confidence            36899999999999999999999999999998543 221111111    67899999999877666554 4678887777


Q ss_pred             CCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCC
Q 040370           96 SANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPS  175 (228)
Q Consensus        96 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  175 (228)
                      ....+...+.|  .+-|.++.|++.++.+++|++|-..++||-. |+.+..-.  .|..++++++|+|+..+ +. ++. 
T Consensus       175 ~n~k~i~WkAH--DGiiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~--~~ey~ITSva~npd~~~-~v-~S~-  246 (737)
T KOG1524|consen  175 ANSKIIRWRAH--DGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANLFTSA--AEEYAITSVAFNPEKDY-LL-WSY-  246 (737)
T ss_pred             cccceeEEecc--CcEEEEeecCccccceeecCCceeEEeeccc-CcccccCC--hhccceeeeeeccccce-ee-eee-
Confidence            77777778876  8899999999999999999999999999964 55555443  37888999999999433 33 332 


Q ss_pred             CeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEE
Q 040370          176 NEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRF  223 (228)
Q Consensus       176 ~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~v  223 (228)
                      ++.+            +.....+.|..++||+||..++.|...|.+.+
T Consensus       247 nt~R------------~~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~  282 (737)
T KOG1524|consen  247 NTAR------------FSSPRVGSIFNLSWSADGTQATCGTSTGQLIV  282 (737)
T ss_pred             eeee------------ecCCCccceEEEEEcCCCceeeccccCceEEE
Confidence            4444            33456788999999999999999999887654

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.82  E-value=2.2e-20  Score=143.57  Aligned_cols=204  Identities=20%  Similarity=0.369  Sum_probs=156.8

Q ss_pred             eEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEE
Q 040370           12 AFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRL   91 (228)
Q Consensus        12 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i   91 (228)
                      ..++.+|...|.|..|...|.++++|++|..++||..+++.+......+    .+.|+.++.+.+..++++++.|..|++
T Consensus       183 ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGh----s~ditdlavs~~n~~iaaaS~D~vIrv  258 (1113)
T KOG0644|consen  183 IKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGH----SGDITDLAVSSNNTMIAAASNDKVIRV  258 (1113)
T ss_pred             HHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCC----ccccchhccchhhhhhhhcccCceEEE
Confidence            3456689999999999999999999999999999999998887766643    889999999988889999999999999


Q ss_pred             EeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCee--------------EEEEecc-------
Q 040370           92 WDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRL--------------VKQYLGA-------  150 (228)
Q Consensus        92 wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~--------------~~~~~~~-------  150 (228)
                      |.+..+.++..+.+|  .+.|++++|+|-.    +.+.||++++||.+-.-.              ...+...       
T Consensus       259 Wrl~~~~pvsvLrgh--tgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~  332 (1113)
T KOG0644|consen  259 WRLPDGAPVSVLRGH--TGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFL  332 (1113)
T ss_pred             EecCCCchHHHHhcc--ccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccc
Confidence            999999999999887  7899999999965    778999999999871100              0000000       


Q ss_pred             ---------ee--------eeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCC-CCcEE
Q 040370          151 ---------TH--------TQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSP-AEAAF  212 (228)
Q Consensus       151 ---------~~--------~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l  212 (228)
                               .+        .....-+..+.+...+..+.-.+-.+.+|++.+|...+.. .+|...+..+.++| +....
T Consensus       333 Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l-~ghsd~~yvLd~Hpfn~ri~  411 (1113)
T KOG0644|consen  333 TGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNL-MGHSDEVYVLDVHPFNPRIA  411 (1113)
T ss_pred             cccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhh-cccccceeeeeecCCCcHhh
Confidence                     00        0000011111111122222333567889999999888887 79999999999999 55667


Q ss_pred             EEecCCCCEEEeee
Q 040370          213 ITCGTDRSVRFWKE  226 (228)
Q Consensus       213 ~s~~~dg~i~vwd~  226 (228)
                      .+++.||...|||+
T Consensus       412 msag~dgst~iwdi  425 (1113)
T KOG0644|consen  412 MSAGYDGSTIIWDI  425 (1113)
T ss_pred             hhccCCCceEeeec
Confidence            78999999999996

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.82  E-value=6.7e-17  Score=113.88  Aligned_cols=195  Identities=11%  Similarity=0.104  Sum_probs=152.1

Q ss_pred             ceEEEEEeCCCCEEEEecC--CCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCCCc
Q 040370           21 NVRSVSFHPSGDFLLAGTD--HPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSAN   98 (228)
Q Consensus        21 ~v~~~~~~~~~~~l~~~~~--d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~   98 (228)
                      .|--+-|+  ..++|..+.  -..+++++.+.+..+.....     ...|.++.++.  +.|+++-++. |+|||+++.+
T Consensus        48 ~IvEmLFS--SSLvaiV~~~qpr~Lkv~~~Kk~~~ICe~~f-----pt~IL~VrmNr--~RLvV~Lee~-IyIydI~~Mk  117 (391)
T KOG2110|consen   48 SIVEMLFS--SSLVAIVSIKQPRKLKVVHFKKKTTICEIFF-----PTSILAVRMNR--KRLVVCLEES-IYIYDIKDMK  117 (391)
T ss_pred             EEEEeecc--cceeEEEecCCCceEEEEEcccCceEEEEec-----CCceEEEEEcc--ceEEEEEccc-EEEEecccce
Confidence            34445554  334444333  34588888888776666554     56799999974  4577776654 9999999999


Q ss_pred             eeeEEecc-cccceeEEEEECCCCCEEEEee--CCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCC
Q 040370           99 CVRSIVGA-HGTAEATSANFTKDQRFVLSCG--KDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPS  175 (228)
Q Consensus        99 ~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~--~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  175 (228)
                      .+.++..- .+...+.++.+++.+.+++.-+  ..|.|.+||+.+-+.+..+..  |...+.+++|+++|.++++++...
T Consensus       118 lLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~a--H~~~lAalafs~~G~llATASeKG  195 (391)
T KOG2110|consen  118 LLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINA--HKGPLAALAFSPDGTLLATASEKG  195 (391)
T ss_pred             eehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEe--cCCceeEEEECCCCCEEEEeccCc
Confidence            99888664 3355577777777777888543  468899999999999888875  888999999999999999988765


Q ss_pred             CeEEEEEcCCcceeEEeecCC-CCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370          176 NEIVIWDALTAEKVAKWSSNH-IGAPRWIEHSPAEAAFITCGTDRSVRFWKEI  227 (228)
Q Consensus       176 ~~i~i~d~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~  227 (228)
                      -.|||+.+.+|+.+.++..+- ...|.+++|+|++++|++.|..++|.+|++.
T Consensus       196 TVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~  248 (391)
T KOG2110|consen  196 TVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLE  248 (391)
T ss_pred             eEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEec
Confidence            578999999999999996553 3468899999999999999999999999874

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.81  E-value=1.2e-17  Score=113.28  Aligned_cols=149  Identities=17%  Similarity=0.275  Sum_probs=108.5

Q ss_pred             eeEEeCCCCCeEEEEec----------CCeEEEEeCCCC-ceeeEEecccccceeEEEEECCCCCEEEEe--eCCCeEEE
Q 040370           69 NQVRYSSTGGMYVTASK----------DGAIRLWDGVSA-NCVRSIVGAHGTAEATSANFTKDQRFVLSC--GKDSTVKL  135 (228)
Q Consensus        69 ~~~~~~~~~~~l~~~~~----------dg~v~iwd~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~~d~~i~~  135 (228)
                      ..+.|+|+|++|+.-..          -|...+|.++.. .....+.... ..+|.+++|+|+++.+++.  ..++.|.+
T Consensus         9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~-~~~I~~~~WsP~g~~favi~g~~~~~v~l   87 (194)
T PF08662_consen    9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKK-EGPIHDVAWSPNGNEFAVIYGSMPAKVTL   87 (194)
T ss_pred             EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccC-CCceEEEEECcCCCEEEEEEccCCcccEE
Confidence            45779999987664332          134555655332 3344444332 4579999999999987544  46779999


Q ss_pred             EEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCC--CCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEE
Q 040370          136 WEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEP--SNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFI  213 (228)
Q Consensus       136 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  213 (228)
                      ||++ ++.+..+.    ......+.|+|+|+++++++..  .|.+.+||.++.+.+...  .|. .++.++|+|+|++|+
T Consensus        88 yd~~-~~~i~~~~----~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~--~~~-~~t~~~WsPdGr~~~  159 (194)
T PF08662_consen   88 YDVK-GKKIFSFG----TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTF--EHS-DATDVEWSPDGRYLA  159 (194)
T ss_pred             EcCc-ccEeEeec----CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeecc--ccC-cEEEEEEcCCCCEEE
Confidence            9996 66666663    3345678999999999998742  478999999988887765  333 478999999999999


Q ss_pred             EecC------CCCEEEeee
Q 040370          214 TCGT------DRSVRFWKE  226 (228)
Q Consensus       214 s~~~------dg~i~vwd~  226 (228)
                      ++..      |+.++||+.
T Consensus       160 ta~t~~r~~~dng~~Iw~~  178 (194)
T PF08662_consen  160 TATTSPRLRVDNGFKIWSF  178 (194)
T ss_pred             EEEeccceeccccEEEEEe
Confidence            9874      788999985

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.81  E-value=1.4e-18  Score=130.47  Aligned_cols=213  Identities=11%  Similarity=0.147  Sum_probs=158.1

Q ss_pred             eeEEEeecCcceEEEEEeC-CCCEEEEecCCCeEEEEEcccceEEee--eccceeeeccceeeEEeCCCCCeEEEEecCC
Q 040370           11 RAFRVIQDTHNVRSVSFHP-SGDFLLAGTDHPIAHLYDVNTFQCYLS--ANVPEISVNGAINQVRYSSTGGMYVTASKDG   87 (228)
Q Consensus        11 ~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~vw~~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg   87 (228)
                      .+-.+.+|.+.|+.+.|+| +..+||+|+.|..|+||.+..+.....  .....++.+-.+.++.|+|...-|+..+..|
T Consensus        71 ~i~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDgil~s~a~g  150 (1012)
T KOG1445|consen   71 DIGILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADGILASGAHG  150 (1012)
T ss_pred             ccceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCceEEeccCc
Confidence            3444558999999999999 677899999999999999985532211  1111223255789999999765566666779


Q ss_pred             eEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccC-CeeEEEEecceeeeeeeEEEECCCCc
Q 040370           88 AIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSS-GRLVKQYLGATHTQLRFQAVFNDTEE  166 (228)
Q Consensus        88 ~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (228)
                      .++|||+.+++....+..|  ...|.++.|+.||..|++++.|+.|+|||.+. ++.++..++|. ...-..+.|..+-.
T Consensus       151 ~v~i~D~stqk~~~el~~h--~d~vQSa~WseDG~llatscKdkqirifDPRa~~~piQ~te~H~-~~rdsRv~w~Gn~~  227 (1012)
T KOG1445|consen  151 SVYITDISTQKTAVELSGH--TDKVQSADWSEDGKLLATSCKDKQIRIFDPRASMEPIQTTEGHG-GMRDSRVLWAGNWE  227 (1012)
T ss_pred             eEEEEEcccCceeecccCC--chhhhccccccCCceEeeecCCcceEEeCCccCCCccccccccc-cchhheeeeccchh
Confidence            9999999999999988887  78899999999999999999999999999986 45666666543 23445677877777


Q ss_pred             EEEEeeCC---CCeEEEEEcCCcc-eeEEeecCCCCCcEEEEeCCCCcEEEEec-CCCCEEEeee
Q 040370          167 FVLSIDEP---SNEIVIWDALTAE-KVAKWSSNHIGAPRWIEHSPAEAAFITCG-TDRSVRFWKE  226 (228)
Q Consensus       167 ~~~~~~~~---d~~i~i~d~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~s~~-~dg~i~vwd~  226 (228)
                      .++++|..   -..+++||.+... .+.++.......|.--.|.||.++|+.+| .+..+..+.+
T Consensus       228 rlisTGF~~~R~reV~~~Dtr~f~~p~~tleld~stGvLiPl~DpDt~llfLaGKG~~~l~~lE~  292 (1012)
T KOG1445|consen  228 RLISTGFTTKRIREVRAYDTRKFGAPVHTLELDSSTGVLIPLYDPDTRLLFLAGKGTNKLFMLEM  292 (1012)
T ss_pred             hhhhcccchhhheeeeeeeccccCCcceeEEeecccceEeeeecCCCceEEEecCCcceEEEEEe
Confidence            88887763   3678999988743 44444334445566667899888776655 4666666553

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.81  E-value=1.1e-17  Score=118.53  Aligned_cols=203  Identities=15%  Similarity=0.182  Sum_probs=152.5

Q ss_pred             CcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCC-eEEEEecC--CeEEEEeCC
Q 040370           19 THNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGG-MYVTASKD--GAIRLWDGV   95 (228)
Q Consensus        19 ~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d--g~v~iwd~~   95 (228)
                      ..+|..++..  ...|++|-.+|.+.+|..+.+....... ........+..+.-+|... .+++|+..  ..+.+||++
T Consensus       105 ~~~I~gl~~~--dg~Litc~~sG~l~~~~~k~~d~hss~l-~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle  181 (412)
T KOG3881|consen  105 TKSIKGLKLA--DGTLITCVSSGNLQVRHDKSGDLHSSKL-IKLATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLE  181 (412)
T ss_pred             cccccchhhc--CCEEEEEecCCcEEEEeccCCccccccc-eeeecCCceeeeccCCCCCceEecCchhcccceeeeecc
Confidence            4455555543  3467778889999999998544211111 0111134566677777544 56669988  899999999


Q ss_pred             CCceeeEEeccc-------ccceeEEEEECCC--CCEEEEeeCCCeEEEEEccCCe-eEEEEecceeeeeeeEEEECCCC
Q 040370           96 SANCVRSIVGAH-------GTAEATSANFTKD--QRFVLSCGKDSTVKLWEVSSGR-LVKQYLGATHTQLRFQAVFNDTE  165 (228)
Q Consensus        96 ~~~~~~~~~~~~-------~~~~i~~~~~~~~--~~~l~~~~~d~~i~~wd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  165 (228)
                      +.+.+..-+...       -+..++++.|-+.  ...|++++.-+.+++||.+.++ ++..+..  ....++++...|.+
T Consensus       182 ~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~--~E~~is~~~l~p~g  259 (412)
T KOG3881|consen  182 QSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDF--LENPISSTGLTPSG  259 (412)
T ss_pred             cceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEecc--ccCcceeeeecCCC
Confidence            875544332211       1446678899987  7899999999999999999765 3444543  56778889999999


Q ss_pred             cEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370          166 EFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEI  227 (228)
Q Consensus       166 ~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~  227 (228)
                      .+++++.. -+.+..||.+.+........+-.+.++++..+|..++|+++|-|..|+|+|+.
T Consensus       260 n~Iy~gn~-~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~k  320 (412)
T KOG3881|consen  260 NFIYTGNT-KGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIK  320 (412)
T ss_pred             cEEEEecc-cchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecc
Confidence            99999777 49999999999999988668899999999999999999999999999999963

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.81  E-value=5.1e-18  Score=133.76  Aligned_cols=207  Identities=12%  Similarity=0.216  Sum_probs=147.6

Q ss_pred             cceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCC--CCCeEEEEecCCeEEEEeCCC-
Q 040370           20 HNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSS--TGGMYVTASKDGAIRLWDGVS-   96 (228)
Q Consensus        20 ~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~~dg~v~iwd~~~-   96 (228)
                      .+-..+.|+|-...++++...-.|+|||.+.++....+...... ...|+.+.+-.  |..++++|+.||.|+||+--. 
T Consensus      1065 ~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~-~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~ 1143 (1387)
T KOG1517|consen 1065 QPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFP-DTRVSDLELINEQDDALLLTASSDGVIRIWKDYAD 1143 (1387)
T ss_pred             CCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCC-CCccceeeeecccchhheeeeccCceEEEeccccc
Confidence            35677889998889999988889999999999887766654433 66899998865  456899999999999997322 


Q ss_pred             ----CceeeEEeccc-----ccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcE
Q 040370           97 ----ANCVRSIVGAH-----GTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEF  167 (228)
Q Consensus        97 ----~~~~~~~~~~~-----~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (228)
                          .+.+.-+..-.     ..+.-.-+.|.....+|++++.-..|+|||....+....+... ....++.+.-+.....
T Consensus      1144 ~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~-s~t~vTaLS~~~~~gn 1222 (1387)
T KOG1517|consen 1144 KWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYG-SSTLVTALSADLVHGN 1222 (1387)
T ss_pred             ccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccC-CCccceeecccccCCc
Confidence                22222221110     0111144678877777777777899999999887777666543 3334444444433444


Q ss_pred             EEEeeCCCCeEEEEEcCCcce--eEEeecCCCCC--cEEEEeCCCCcE-EEEecCCCCEEEeeecC
Q 040370          168 VLSIDEPSNEIVIWDALTAEK--VAKWSSNHIGA--PRWIEHSPAEAA-FITCGTDRSVRFWKEIL  228 (228)
Q Consensus       168 ~~~~~~~d~~i~i~d~~~~~~--~~~~~~~~~~~--v~~~~~~~~~~~-l~s~~~dg~i~vwd~~l  228 (228)
                      ++++|..||.+++||.|....  .......|...  |..+.+.+.|-. |++|+.||.|++||++|
T Consensus      1223 ~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~ 1288 (1387)
T KOG1517|consen 1223 IIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRM 1288 (1387)
T ss_pred             eEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEeccc
Confidence            555566699999999987654  33333678776  999999986654 99999999999999986

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.80  E-value=5.3e-17  Score=124.07  Aligned_cols=199  Identities=15%  Similarity=0.119  Sum_probs=133.2

Q ss_pred             EEEeecCcceEEEEEeCCCCEEEEecC---CCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEE-EEecCC-
Q 040370           13 FRVIQDTHNVRSVSFHPSGDFLLAGTD---HPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYV-TASKDG-   87 (228)
Q Consensus        13 ~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~dg-   87 (228)
                      ..+..+...+.+.+|+|+++.|+..+.   +..|.+||+.+++.......     .+...+..|+|+|+.++ +.+.+| 
T Consensus       197 ~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~-----~g~~~~~~~SpDG~~l~~~~s~~g~  271 (433)
T PRK04922        197 QTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASF-----RGINGAPSFSPDGRRLALTLSRDGN  271 (433)
T ss_pred             eEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccC-----CCCccCceECCCCCEEEEEEeCCCC
Confidence            345567778999999999999987763   34799999988765432221     33445789999998775 455555 


Q ss_pred             -eEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeC-CCe--EEEEEccCCeeEEEEecceeeeeeeEEEECC
Q 040370           88 -AIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGK-DST--VKLWEVSSGRLVKQYLGATHTQLRFQAVFND  163 (228)
Q Consensus        88 -~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~~--i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (228)
                       .|.+||+.+++... +..+  .......+|+||+++|+..+. ++.  |+++|+.+++... +..  .........|+|
T Consensus       272 ~~Iy~~d~~~g~~~~-lt~~--~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~-lt~--~g~~~~~~~~Sp  345 (433)
T PRK04922        272 PEIYVMDLGSRQLTR-LTNH--FGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAER-LTF--QGNYNARASVSP  345 (433)
T ss_pred             ceEEEEECCCCCeEE-CccC--CCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEE-eec--CCCCccCEEECC
Confidence             59999998876433 3332  334467899999998887663 444  7777776665332 221  122334678999


Q ss_pred             CCcEEEEeeCCCC--eEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCC-C--CEEEee
Q 040370          164 TEEFVLSIDEPSN--EIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTD-R--SVRFWK  225 (228)
Q Consensus       164 ~~~~~~~~~~~d~--~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d-g--~i~vwd  225 (228)
                      ++++++.+...++  .|.+||+.+++.. .+  .+........|+|+|++++..+.+ +  .+.+++
T Consensus       346 DG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~L--t~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~  409 (433)
T PRK04922        346 DGKKIAMVHGSGGQYRIAVMDLSTGSVR-TL--TPGSLDESPSFAPNGSMVLYATREGGRGVLAAVS  409 (433)
T ss_pred             CCCEEEEEECCCCceeEEEEECCCCCeE-EC--CCCCCCCCceECCCCCEEEEEEecCCceEEEEEE
Confidence            9999887654333  6999999877654 33  122234567899999987766653 3  344444

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.80  E-value=1e-16  Score=122.62  Aligned_cols=191  Identities=15%  Similarity=0.086  Sum_probs=130.7

Q ss_pred             EEEeecCcceEEEEEeCCCCEEEEecC---CCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEE-EEecCCe
Q 040370           13 FRVIQDTHNVRSVSFHPSGDFLLAGTD---HPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYV-TASKDGA   88 (228)
Q Consensus        13 ~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~dg~   88 (228)
                      ..+..|...+.+.+|+|||+.|+..+.   +..|.+||+.+++.......     .+.+....|+|+|+.|+ +.+.++.
T Consensus       195 ~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~-----~g~~~~~~~SPDG~~la~~~~~~g~  269 (435)
T PRK05137        195 RYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNF-----PGMTFAPRFSPDGRKVVMSLSQGGN  269 (435)
T ss_pred             EEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecC-----CCcccCcEECCCCCEEEEEEecCCC
Confidence            445567889999999999999887653   46899999988765332211     45667889999998765 5555555


Q ss_pred             --EEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeC-CC--eEEEEEccCCeeEEEEecceeeeeeeEEEECC
Q 040370           89 --IRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGK-DS--TVKLWEVSSGRLVKQYLGATHTQLRFQAVFND  163 (228)
Q Consensus        89 --v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~--~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (228)
                        |.+||+.+++..+ +..+  ........|+||++.++..+. ++  .|+++|+..++.. .+..  .........|+|
T Consensus       270 ~~Iy~~d~~~~~~~~-Lt~~--~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~-~lt~--~~~~~~~~~~Sp  343 (435)
T PRK05137        270 TDIYTMDLRSGTTTR-LTDS--PAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPR-RISF--GGGRYSTPVWSP  343 (435)
T ss_pred             ceEEEEECCCCceEE-ccCC--CCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeE-Eeec--CCCcccCeEECC
Confidence              7777988776533 3332  345567899999998887663 33  6888898765443 3322  123345578999


Q ss_pred             CCcEEEEeeCCC--CeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecC
Q 040370          164 TEEFVLSIDEPS--NEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGT  217 (228)
Q Consensus       164 ~~~~~~~~~~~d--~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~  217 (228)
                      +++.++......  ..|.+||+..+.. ..+..  ...+....|+|||+.|+..+.
T Consensus       344 dG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt~--~~~~~~p~~spDG~~i~~~~~  396 (435)
T PRK05137        344 RGDLIAFTKQGGGQFSIGVMKPDGSGE-RILTS--GFLVEGPTWAPNGRVIMFFRQ  396 (435)
T ss_pred             CCCEEEEEEcCCCceEEEEEECCCCce-EeccC--CCCCCCCeECCCCCEEEEEEc
Confidence            999998765433  4688888755443 33322  234677899999998876554

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.80  E-value=2.4e-17  Score=113.62  Aligned_cols=159  Identities=22%  Similarity=0.325  Sum_probs=116.6

Q ss_pred             ccceeeEEeCCCCCeEEEEecCCeEEEEeCCCC----ceeeEEecccccceeEEEEECC--CCCEEEEeeCCCeEEEEEc
Q 040370           65 NGAINQVRYSSTGGMYVTASKDGAIRLWDGVSA----NCVRSIVGAHGTAEATSANFTK--DQRFVLSCGKDSTVKLWEV  138 (228)
Q Consensus        65 ~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~----~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~~d~~i~~wd~  138 (228)
                      ..-|+++.|.+.|+.+++|+.|++|+|||.+..    .+......|  .+.|..+.|.+  -|+.+++++.|+++.||.-
T Consensus        13 ~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah--~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE   90 (361)
T KOG2445|consen   13 KDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAH--DGSIWRVVWAHPEFGQVVATCSYDRTVSIWEE   90 (361)
T ss_pred             cceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEec--CCcEEEEEecCccccceEEEEecCCceeeeee
Confidence            677999999999999999999999999997543    344555555  77899999876  6899999999999999975


Q ss_pred             cC-------CeeEEEEecceeeeeeeEEEECCCC-cEEEEeeCCCCeEEEEEcCCcc-----------------------
Q 040370          139 SS-------GRLVKQYLGATHTQLRFQAVFNDTE-EFVLSIDEPSNEIVIWDALTAE-----------------------  187 (228)
Q Consensus       139 ~~-------~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~i~i~d~~~~~-----------------------  187 (228)
                      ..       .+.+..-........++.+.|.|.. ...+++.+.||.+|||+....-                       
T Consensus        91 ~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~  170 (361)
T KOG2445|consen   91 QEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQ  170 (361)
T ss_pred             cccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccC
Confidence            21       1112222222356678888888864 3444555668999999752210                       


Q ss_pred             --------------------------------------------eeEEeecCCCCCcEEEEeCCC----CcEEEEecCCC
Q 040370          188 --------------------------------------------KVAKWSSNHIGAPRWIEHSPA----EAAFITCGTDR  219 (228)
Q Consensus       188 --------------------------------------------~~~~~~~~~~~~v~~~~~~~~----~~~l~s~~~dg  219 (228)
                                                                  .+.++ .+|..+|+.++|.|+    ..+||+++.||
T Consensus       171 ~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L-~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg  249 (361)
T KOG2445|consen  171 PCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAEL-PDHTDPIRDISWAPNIGRSYHLLAVATKDG  249 (361)
T ss_pred             cceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhc-CCCCCcceeeeeccccCCceeeEEEeecCc
Confidence                                                        01111 368889999999994    35899999999


Q ss_pred             CEEEeeec
Q 040370          220 SVRFWKEI  227 (228)
Q Consensus       220 ~i~vwd~~  227 (228)
                       |+||++.
T Consensus       250 -v~I~~v~  256 (361)
T KOG2445|consen  250 -VRIFKVK  256 (361)
T ss_pred             -EEEEEEe
Confidence             9999874

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.80  E-value=2.4e-17  Score=131.63  Aligned_cols=219  Identities=13%  Similarity=0.212  Sum_probs=162.1

Q ss_pred             ccceeEEEeecCcceEEEEEeCC-CCEEEEecCCCeEEEEEcccceEE---eeeccceeeeccceeeEEeCCCCCeEEEE
Q 040370            8 TAKRAFRVIQDTHNVRSVSFHPS-GDFLLAGTDHPIAHLYDVNTFQCY---LSANVPEISVNGAINQVRYSSTGGMYVTA   83 (228)
Q Consensus         8 ~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~vw~~~~~~~~---~~~~~~~~~~~~~i~~~~~~~~~~~l~~~   83 (228)
                      .+..+.++..|...+..++.++. +.+|++|+.||+|++|++..-...   ............++.++.+.+.++.+|.+
T Consensus      1037 ~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~ 1116 (1431)
T KOG1240|consen 1037 RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVS 1116 (1431)
T ss_pred             cceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEE
Confidence            35566777789999999999874 599999999999999998753211   00011001126789999999999999999


Q ss_pred             ecCCeEEEEeCCCC--c-----eeeEEecccccceeEEEEECC-CCC-EEEEeeCCCeEEEEEccCCeeEEEEecceeee
Q 040370           84 SKDGAIRLWDGVSA--N-----CVRSIVGAHGTAEATSANFTK-DQR-FVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQ  154 (228)
Q Consensus        84 ~~dg~v~iwd~~~~--~-----~~~~~~~~~~~~~i~~~~~~~-~~~-~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~  154 (228)
                      +.||.|++.+++..  +     ..+....+..+..+..-+|.. .+. .++.+..-+.|..||++......+++.....+
T Consensus      1117 t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG 1196 (1431)
T KOG1240|consen 1117 TKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHG 1196 (1431)
T ss_pred             cCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCcccc
Confidence            99999999998762  1     222222222233333444444 333 67888888999999999888777777666778


Q ss_pred             eeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCC---CcEEEEec--CCCCEEEeeec
Q 040370          155 LRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPA---EAAFITCG--TDRSVRFWKEI  227 (228)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~s~~--~dg~i~vwd~~  227 (228)
                      .+++++.+|.+.+++.+.+ .|.+.+||+|-+.++..+..++..++..+..+|-   ....++++  ..+.|.+|++.
T Consensus      1197 ~vTSi~idp~~~WlviGts-~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~ 1273 (1431)
T KOG1240|consen 1197 LVTSIVIDPWCNWLVIGTS-RGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNME 1273 (1431)
T ss_pred             ceeEEEecCCceEEEEecC-CceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecc
Confidence            8999999999998888666 5999999999999999987778889999888873   24555544  46789999863

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.80  E-value=1.5e-18  Score=128.07  Aligned_cols=212  Identities=18%  Similarity=0.240  Sum_probs=153.3

Q ss_pred             eeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccc-----eEEeeeccceeeeccceeeEEeCCCCCeEEEEec
Q 040370           11 RAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTF-----QCYLSANVPEISVNGAINQVRYSSTGGMYVTASK   85 (228)
Q Consensus        11 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~-----~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~   85 (228)
                      ..+.+..|...|+.++|+|....|++++.||.+.+|+++..     ..+........| .++|.|+++.+++..+++|+.
T Consensus       286 ik~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH-~gPVl~v~v~~n~~~~ysgg~  364 (577)
T KOG0642|consen  286 IKFTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAH-EGPVLCVVVPSNGEHCYSGGI  364 (577)
T ss_pred             eeeeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecc-cCceEEEEecCCceEEEeecc
Confidence            34567789999999999999999999999999999999431     122222233344 999999999999999999999


Q ss_pred             CCeEEEEeCCCC----------ceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeee
Q 040370           86 DGAIRLWDGVSA----------NCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQL  155 (228)
Q Consensus        86 dg~v~iwd~~~~----------~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~  155 (228)
                      ||+|+.|++...          .....+.+|  ...++.+++++....|++++.||+++.|+.....+ .++........
T Consensus       365 Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Gh--tdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~  441 (577)
T KOG0642|consen  365 DGTIRCWNLPPNQDPDDSYDPSVLSGTLLGH--TDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGY  441 (577)
T ss_pred             CceeeeeccCCCCCcccccCcchhccceecc--ccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCC
Confidence            999999965421          122344554  77899999999989999999999999999876555 45544444455


Q ss_pred             eeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecC------CCCCcEEEEeCCCCcEEEEecCCCCEEEeee
Q 040370          156 RFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSN------HIGAPRWIEHSPAEAAFITCGTDRSVRFWKE  226 (228)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~------~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~  226 (228)
                      ...+.+-.....+..++..-+.-.++++..+..+..+...      -...+..+.++|...+.+++..|+.|+++|.
T Consensus       442 Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn  518 (577)
T KOG0642|consen  442 PLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDN  518 (577)
T ss_pred             cceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccc
Confidence            5566655554333333332344445555555544444211      1235778889999999999999999999985

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.80  E-value=1.2e-17  Score=131.71  Aligned_cols=225  Identities=12%  Similarity=0.123  Sum_probs=152.8

Q ss_pred             CCcCCccccceeEEEe-ecCcceEEEEEeC--CCCEEEEecCCCeEEEEEccc-----ceEEeeeccceeee---cccee
Q 040370            1 FFDFSKATAKRAFRVI-QDTHNVRSVSFHP--SGDFLLAGTDHPIAHLYDVNT-----FQCYLSANVPEISV---NGAIN   69 (228)
Q Consensus         1 iwd~~~~~~~~~~~~~-~~~~~v~~~~~~~--~~~~l~~~~~d~~i~vw~~~~-----~~~~~~~~~~~~~~---~~~i~   69 (228)
                      |||+.+...-.-+... .....|+.+.+-.  |..++++|+.||.|+||+--.     .+.+..........   .+.=.
T Consensus      1090 vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~ 1169 (1387)
T KOG1517|consen 1090 VWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGL 1169 (1387)
T ss_pred             EEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCe
Confidence            4777755543333222 1346789998865  567899999999999997422     22222221111110   11113


Q ss_pred             eEEeCCCCCeEEEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECC-CCCEEEEeeCCCeEEEEEccCCe---eEE
Q 040370           70 QVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTK-DQRFVLSCGKDSTVKLWEVSSGR---LVK  145 (228)
Q Consensus        70 ~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~---~~~  145 (228)
                      -+.|.....+|++++.-..|+|||.........+.... ...++++.-+. .|+.+++|..||.|++||.|...   .+.
T Consensus      1170 v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s-~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~ 1248 (1387)
T KOG1517|consen 1170 VVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGS-STLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVC 1248 (1387)
T ss_pred             eeehhhhCCeEEecCCeeEEEEEecccceeEeecccCC-CccceeecccccCCceEEEeecCCceEEeecccCCccccce
Confidence            46787766677777778999999999888887776653 55677766544 56899999999999999998643   345


Q ss_pred             EEecceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEe-ecCC---CCCcEEEEeCCCCcEEEEecCCCCE
Q 040370          146 QYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKW-SSNH---IGAPRWIEHSPAEAAFITCGTDRSV  221 (228)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~-~~~~---~~~v~~~~~~~~~~~l~s~~~dg~i  221 (228)
                      ..+.+.....+..+.+.+.|---+++++.||.|++||+|.......+ ...|   .+..+++..+++...+|+|+. +.|
T Consensus      1249 ~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~i 1327 (1387)
T KOG1517|consen 1249 VYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLI 1327 (1387)
T ss_pred             eecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceE
Confidence            55554444448888888877654555666899999999985222111 1222   235999999999999999998 999


Q ss_pred             EEeeec
Q 040370          222 RFWKEI  227 (228)
Q Consensus       222 ~vwd~~  227 (228)
                      +||++.
T Consensus      1328 kIy~~~ 1333 (1387)
T KOG1517|consen 1328 KIYSLS 1333 (1387)
T ss_pred             EEEecC
Confidence            999963

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.79  E-value=4.1e-17  Score=114.86  Aligned_cols=194  Identities=13%  Similarity=0.189  Sum_probs=135.5

Q ss_pred             cCcceEEEEEeC-CCCEEEEecCCCeEEEEEcccceEEee---------eccceeeeccceeeEEeCCCCCeEEEEec-C
Q 040370           18 DTHNVRSVSFHP-SGDFLLAGTDHPIAHLYDVNTFQCYLS---------ANVPEISVNGAINQVRYSSTGGMYVTASK-D   86 (228)
Q Consensus        18 ~~~~v~~~~~~~-~~~~l~~~~~d~~i~vw~~~~~~~~~~---------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d   86 (228)
                      ....|+|++|-| .+..|++|+..| |.+|....-.....         .+.....-..+|+++.|++||..+++++. |
T Consensus       139 sQrnvtclawRPlsaselavgCr~g-IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gs  217 (445)
T KOG2139|consen  139 SQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGS  217 (445)
T ss_pred             hhcceeEEEeccCCcceeeeeecce-eEEEEcCcccccccccccccccchhheeCCCCceeeEEEEcCCCCEEeecccCc
Confidence            356899999999 556788888765 78998653211110         11111111468999999999999998885 6


Q ss_pred             CeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCc
Q 040370           87 GAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEE  166 (228)
Q Consensus        87 g~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (228)
                      ..|.|||+.++..+......  .+.+.-+.|+||+.+|+++.-|+..++|.............  ....+...+|+|+|.
T Consensus       218 ssi~iWdpdtg~~~pL~~~g--lgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~l--gsgrvqtacWspcGs  293 (445)
T KOG2139|consen  218 SSIMIWDPDTGQKIPLIPKG--LGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWIL--GSGRVQTACWSPCGS  293 (445)
T ss_pred             ceEEEEcCCCCCcccccccC--CCceeeEEEcCCCCEEEEecccceeeeehhcccceecceec--cCCceeeeeecCCCC
Confidence            78999999998776655332  66788999999999999999999999996554333222222  344788999999999


Q ss_pred             EEEEeeCCCCeEEEEEcCCccee---------------EEee--------cCCCCCcEEEEeCCCCcEEEEecCC
Q 040370          167 FVLSIDEPSNEIVIWDALTAEKV---------------AKWS--------SNHIGAPRWIEHSPAEAAFITCGTD  218 (228)
Q Consensus       167 ~~~~~~~~d~~i~i~d~~~~~~~---------------~~~~--------~~~~~~v~~~~~~~~~~~l~s~~~d  218 (228)
                      +++.+.+  +.-++|.+...+..               ..+.        .--.+++.+++|.|.|.+|++.-..
T Consensus       294 fLLf~~s--gsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg  366 (445)
T KOG2139|consen  294 FLLFACS--GSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKG  366 (445)
T ss_pred             EEEEEEc--CCceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcC
Confidence            9988877  55666654321110               0000        0125678899999999999986543

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.78  E-value=4e-17  Score=124.91  Aligned_cols=221  Identities=10%  Similarity=0.109  Sum_probs=156.7

Q ss_pred             CCcCCccccc----eeEEEeecCcceEEEEEeCCC--CEEEEecCCCeEEEEEcccceEEeeec--------cceeeecc
Q 040370            1 FFDFSKATAK----RAFRVIQDTHNVRSVSFHPSG--DFLLAGTDHPIAHLYDVNTFQCYLSAN--------VPEISVNG   66 (228)
Q Consensus         1 iwd~~~~~~~----~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~d~~i~vw~~~~~~~~~~~~--------~~~~~~~~   66 (228)
                      +||+.....+    .......|..++..+.|..+.  .-|++++.||.|..|+++.-.......        ........
T Consensus       269 lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~  348 (555)
T KOG1587|consen  269 LWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAV  348 (555)
T ss_pred             EEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhccccccccccccccccc
Confidence            5787765542    223334689999999997743  459999999999999876533211100        00111144


Q ss_pred             ceeeEEeCC-CCCeEEEEecCCeEEEEeCC---CCc-----eeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEE
Q 040370           67 AINQVRYSS-TGGMYVTASKDGAIRLWDGV---SAN-----CVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWE  137 (228)
Q Consensus        67 ~i~~~~~~~-~~~~l~~~~~dg~v~iwd~~---~~~-----~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd  137 (228)
                      .+++++|.+ +-+.|+.|+++|.|.-=+-.   ...     .......  +.++|.++.++|-...++..+.|.++++|.
T Consensus       349 ~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~--h~g~v~~v~~nPF~~k~fls~gDW~vriWs  426 (555)
T KOG1587|consen  349 GATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFIT--HIGPVYAVSRNPFYPKNFLSVGDWTVRIWS  426 (555)
T ss_pred             ceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccc--cCcceEeeecCCCccceeeeeccceeEecc
Confidence            688999988 55689999999999873322   221     1112222  378999999999665544444499999999


Q ss_pred             cc-CCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcc--eeEEeecCCCCCcEEEEeCCCCcEEEE
Q 040370          138 VS-SGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAE--KVAKWSSNHIGAPRWIEHSPAEAAFIT  214 (228)
Q Consensus       138 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~s  214 (228)
                      .. ...++..+..  +...++.++|+|...-++++...||.+.+||+....  +..+. ..+....+.+.|+++|+.|+.
T Consensus       427 ~~~~~~Pl~~~~~--~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~-~~~~~~l~~~~~s~~g~~lav  503 (555)
T KOG1587|consen  427 EDVIASPLLSLDS--SPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQ-KVCSPALTRVRWSPNGKLLAV  503 (555)
T ss_pred             ccCCCCcchhhhh--ccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCcccc-cccccccceeecCCCCcEEEE
Confidence            87 5555555544  566699999999999999999989999999997544  33333 234566777888889999999


Q ss_pred             ecCCCCEEEeee
Q 040370          215 CGTDRSVRFWKE  226 (228)
Q Consensus       215 ~~~dg~i~vwd~  226 (228)
                      |...|.+.+|++
T Consensus       504 Gd~~G~~~~~~l  515 (555)
T KOG1587|consen  504 GDANGTTHILKL  515 (555)
T ss_pred             ecCCCcEEEEEc
Confidence            999999999997

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.78  E-value=4.7e-18  Score=125.26  Aligned_cols=196  Identities=20%  Similarity=0.329  Sum_probs=148.0

Q ss_pred             ecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccce-eeEEeCC-------CCCeEEEEecCCe
Q 040370           17 QDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAI-NQVRYSS-------TGGMYVTASKDGA   88 (228)
Q Consensus        17 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~-------~~~~l~~~~~dg~   88 (228)
                      .|...+.|+.|+.+...+.+++++..+.-|++.+... .....+.    ..+ +.+-.-|       ....|+.++.||.
T Consensus        12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~-~~~~~p~----df~pt~~h~~~rs~~~g~~~d~~~i~s~DGk   86 (737)
T KOG1524|consen   12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSV-EVAKLPD----DFVPTDMHLGGRSSGGGKGSDTLLICSNDGR   86 (737)
T ss_pred             ccceeEEeecccccceEEEeccCceEEEeecccchhh-hhhhCCc----ccCCccccccccccCCCCCcceEEEEcCCce
Confidence            5777888999998777777776665555555544332 2222221    111 1111111       2347889999999


Q ss_pred             EEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEE
Q 040370           89 IRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFV  168 (228)
Q Consensus        89 v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (228)
                      +.+.+ +.++..+.+..|  .+.+.+-.|+|+|.-|+++++||.|++|. ++|....++..  ....+.+++|.|+...+
T Consensus        87 f~il~-k~~rVE~sv~AH--~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q--~~~~v~c~~W~p~S~~v  160 (737)
T KOG1524|consen   87 FVILN-KSARVERSISAH--AAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQ--NEESIRCARWAPNSNSI  160 (737)
T ss_pred             EEEec-ccchhhhhhhhh--hhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhh--cCceeEEEEECCCCCce
Confidence            99988 567766777666  77899999999999999999999999998 45555444432  56788999999999988


Q ss_pred             EEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeee
Q 040370          169 LSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKE  226 (228)
Q Consensus       169 ~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~  226 (228)
                      +.+.+  +.+.|=.+.....+..+ ..|.+-|.++.|+|..+++++||+|-..++||-
T Consensus       161 l~c~g--~h~~IKpL~~n~k~i~W-kAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~  215 (737)
T KOG1524|consen  161 VFCQG--GHISIKPLAANSKIIRW-RAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDA  215 (737)
T ss_pred             EEecC--CeEEEeecccccceeEE-eccCcEEEEeecCccccceeecCCceeEEeecc
Confidence            88766  78888888877788888 799999999999999999999999999999995

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.78  E-value=2e-16  Score=120.62  Aligned_cols=193  Identities=14%  Similarity=0.186  Sum_probs=127.3

Q ss_pred             EEEeecCcceEEEEEeCCCCEEEEecC---CCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEE-EEecCCe
Q 040370           13 FRVIQDTHNVRSVSFHPSGDFLLAGTD---HPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYV-TASKDGA   88 (228)
Q Consensus        13 ~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~dg~   88 (228)
                      ..+..+...+.+.+|+|||+.|+..+.   ...|.+||+.+++.......     .+.+....|+|+|+.|+ +.+.+|.
T Consensus       189 ~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~-----~g~~~~~~~SPDG~~la~~~~~~g~  263 (427)
T PRK02889        189 QSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANF-----KGSNSAPAWSPDGRTLAVALSRDGN  263 (427)
T ss_pred             eEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecC-----CCCccceEECCCCCEEEEEEccCCC
Confidence            344467788999999999999987653   34699999998865432211     34456889999998776 5677887


Q ss_pred             EEEEe--CCCCceeeEEecccccceeEEEEECCCCCEEEEeeC-CCeEEEEEc--cCCeeEEEEecceeeeeeeEEEECC
Q 040370           89 IRLWD--GVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGK-DSTVKLWEV--SSGRLVKQYLGATHTQLRFQAVFND  163 (228)
Q Consensus        89 v~iwd--~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~~i~~wd~--~~~~~~~~~~~~~~~~~~~~~~~~~  163 (228)
                      ..+|.  +..+. ...+..+  ........|+|||+.|+..+. ++...+|.+  .+++. ..+..  .........|+|
T Consensus       264 ~~Iy~~d~~~~~-~~~lt~~--~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~-~~lt~--~g~~~~~~~~Sp  337 (427)
T PRK02889        264 SQIYTVNADGSG-LRRLTQS--SGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAA-QRVTF--TGSYNTSPRISP  337 (427)
T ss_pred             ceEEEEECCCCC-cEECCCC--CCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCce-EEEec--CCCCcCceEECC
Confidence            66665  44443 3344332  334566789999998876554 455556654  44433 22221  122234578999


Q ss_pred             CCcEEEEeeCCCC--eEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCC
Q 040370          164 TEEFVLSIDEPSN--EIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDR  219 (228)
Q Consensus       164 ~~~~~~~~~~~d~--~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg  219 (228)
                      ++++++.++..++  .|.+||+.+++..... ..  .......|+|+++.|+.++.++
T Consensus       338 DG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt-~~--~~~~~p~~spdg~~l~~~~~~~  392 (427)
T PRK02889        338 DGKLLAYISRVGGAFKLYVQDLATGQVTALT-DT--TRDESPSFAPNGRYILYATQQG  392 (427)
T ss_pred             CCCEEEEEEccCCcEEEEEEECCCCCeEEcc-CC--CCccCceECCCCCEEEEEEecC
Confidence            9999887665333  6999999887654322 22  2346789999999888777544

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.78  E-value=9.8e-17  Score=124.03  Aligned_cols=164  Identities=13%  Similarity=0.207  Sum_probs=117.9

Q ss_pred             ecCcceEEEEEeCCCCEEEEecCCCeEEEEEccc-ceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCC
Q 040370           17 QDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNT-FQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGV   95 (228)
Q Consensus        17 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~   95 (228)
                      .|...++|.++||+++++|+|..||.|.+|.--. ..........+.| ...|.++.|+++|.+|++|+..|.+.+|.+.
T Consensus       203 ~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH-~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~  281 (792)
T KOG1963|consen  203 HHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWH-HDEVNSLSFSSDGAYLLSGGREGVLVLWQLE  281 (792)
T ss_pred             hhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEec-ccccceeEEecCCceEeecccceEEEEEeec
Confidence            5777899999999999999999999999997543 2222333444455 6889999999999999999999999999999


Q ss_pred             CCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecce---------eeeeeeEEEECCCCc
Q 040370           96 SANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGAT---------HTQLRFQAVFNDTEE  166 (228)
Q Consensus        96 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~  166 (228)
                      +++ .+-++.-  .++|..+.++||+.+.+....|..|.+....+......+.+..         .......+.++|..+
T Consensus       282 T~~-kqfLPRL--gs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~  358 (792)
T KOG1963|consen  282 TGK-KQFLPRL--GSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTN  358 (792)
T ss_pred             CCC-ccccccc--CCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCC
Confidence            988 3333333  7899999999999999999999999998875544333332211         122334455555333


Q ss_pred             EEEEeeCCCCeEEEEEcCC
Q 040370          167 FVLSIDEPSNEIVIWDALT  185 (228)
Q Consensus       167 ~~~~~~~~d~~i~i~d~~~  185 (228)
                      .++..+. .|.|.+||+-+
T Consensus       359 ~~vln~~-~g~vQ~ydl~t  376 (792)
T KOG1963|consen  359 SLVLNGH-PGHVQFYDLYT  376 (792)
T ss_pred             ceeecCC-CceEEEEeccc
Confidence            3333333 36666666533

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.77  E-value=1.9e-16  Score=119.99  Aligned_cols=197  Identities=12%  Similarity=0.234  Sum_probs=142.8

Q ss_pred             ceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCCC---
Q 040370           21 NVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSA---   97 (228)
Q Consensus        21 ~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~---   97 (228)
                      .|..++|-|||..|+.+..+ .+.+||...|.....++.   | +..|.|++|+.+|+.+++|+.|..|.+|+..-.   
T Consensus        14 ci~d~afkPDGsqL~lAAg~-rlliyD~ndG~llqtLKg---H-KDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~L   88 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAAGS-RLLVYDTSDGTLLQPLKG---H-KDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGIL   88 (1081)
T ss_pred             chheeEECCCCceEEEecCC-EEEEEeCCCccccccccc---c-cceEEEEEEccCCceeccCCCceeEEEeccccccee
Confidence            79999999999998877654 688999999987766653   3 889999999999999999999999999985421   


Q ss_pred             -----ceeeEEe---------------------------cccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEE
Q 040370           98 -----NCVRSIV---------------------------GAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVK  145 (228)
Q Consensus        98 -----~~~~~~~---------------------------~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~  145 (228)
                           ..++.+.                           .+.....+.+++|..||++++.|-.+|+|.+-+- +++...
T Consensus        89 kYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk-~gEek~  167 (1081)
T KOG1538|consen   89 KYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNK-NGEEKV  167 (1081)
T ss_pred             eeccCCeeeEeecCchHHHhhhcchhhccccChhhhhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecC-CCCcce
Confidence                 1222211                           1112467888999999999999999999998764 444444


Q ss_pred             EEec-ceeeeeeeEEEECCCCc----EEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCC
Q 040370          146 QYLG-ATHTQLRFQAVFNDTEE----FVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRS  220 (228)
Q Consensus       146 ~~~~-~~~~~~~~~~~~~~~~~----~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~  220 (228)
                      .+.. .....++..++|+|...    -+++......++.+|.+ +|+.+..- ..-.-...|+.+.|+|.+++.||.|+.
T Consensus       168 ~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~L-sG~~Igk~-r~L~FdP~CisYf~NGEy~LiGGsdk~  245 (1081)
T KOG1538|consen  168 KIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQL-SGKQIGKD-RALNFDPCCISYFTNGEYILLGGSDKQ  245 (1081)
T ss_pred             EEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEe-cceeeccc-ccCCCCchhheeccCCcEEEEccCCCc
Confidence            4432 33567889999998653    12222233455555554 34443322 233445678999999999999999999


Q ss_pred             EEEee
Q 040370          221 VRFWK  225 (228)
Q Consensus       221 i~vwd  225 (228)
                      +++|-
T Consensus       246 L~~fT  250 (1081)
T KOG1538|consen  246 LSLFT  250 (1081)
T ss_pred             eEEEe
Confidence            98874

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.77  E-value=9.4e-18  Score=119.82  Aligned_cols=155  Identities=17%  Similarity=0.270  Sum_probs=118.1

Q ss_pred             eeEEeCCCCCeEEEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEe
Q 040370           69 NQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYL  148 (228)
Q Consensus        69 ~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~  148 (228)
                      .+++|+++|..+++++.||++|+|+..+...+.....+  ..+|.++.|+||++.|++.+.| ..+||+.+++..+....
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~--~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t  224 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAH--HAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKT  224 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhh--cCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcC
Confidence            67999999999999999999999997777766666665  6799999999999999999999 89999999997766665


Q ss_pred             cceeeeeeeEEEECCCC---c-EEEEeeCCCCeEEEEEcCCcce-----eEEeecCCCCCcEEEEeCCCCcEEEEecCCC
Q 040370          149 GATHTQLRFQAVFNDTE---E-FVLSIDEPSNEIVIWDALTAEK-----VAKWSSNHIGAPRWIEHSPAEAAFITCGTDR  219 (228)
Q Consensus       149 ~~~~~~~~~~~~~~~~~---~-~~~~~~~~d~~i~i~d~~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg  219 (228)
                      ..........+.|..++   . ++++.-..-+.|+.||+.....     ..+. ......|++++.+++|++++.|+.||
T Consensus       225 ~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~-~~~~~siSsl~VS~dGkf~AlGT~dG  303 (398)
T KOG0771|consen  225 PFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKK-IKRFKSISSLAVSDDGKFLALGTMDG  303 (398)
T ss_pred             CcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhh-hhccCcceeEEEcCCCcEEEEeccCC
Confidence            33344445556666554   2 4444444456777776543222     1111 12345799999999999999999999


Q ss_pred             CEEEeeec
Q 040370          220 SVRFWKEI  227 (228)
Q Consensus       220 ~i~vwd~~  227 (228)
                      .|.|++..
T Consensus       304 sVai~~~~  311 (398)
T KOG0771|consen  304 SVAIYDAK  311 (398)
T ss_pred             cEEEEEec
Confidence            99999853

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.77  E-value=3e-17  Score=120.91  Aligned_cols=139  Identities=22%  Similarity=0.392  Sum_probs=108.7

Q ss_pred             CcceEEEEEeC-CCCEEEEecCCCeEEEEEcccc--------------eEEeee---------ccc--eeeeccceeeEE
Q 040370           19 THNVRSVSFHP-SGDFLLAGTDHPIAHLYDVNTF--------------QCYLSA---------NVP--EISVNGAINQVR   72 (228)
Q Consensus        19 ~~~v~~~~~~~-~~~~l~~~~~d~~i~vw~~~~~--------------~~~~~~---------~~~--~~~~~~~i~~~~   72 (228)
                      ...|+|+.|-| +...++++-.+|.+.+||.+..              ......         ...  ... .+.|+..+
T Consensus       219 ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~-~g~in~f~  297 (636)
T KOG2394|consen  219 KSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIG-EGSINEFA  297 (636)
T ss_pred             ccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEec-ccccccee
Confidence            47899999999 5556777788999999976321              000000         000  011 45789999


Q ss_pred             eCCCCCeEEEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEeccee
Q 040370           73 YSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATH  152 (228)
Q Consensus        73 ~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~  152 (228)
                      |+|||++||+.+.||.++|+|..+.+++-.++..  -+...|++|+|||+|+++|++|--|.||.+...+.+..-++  |
T Consensus       298 FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSY--FGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqG--H  373 (636)
T KOG2394|consen  298 FSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSY--FGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQG--H  373 (636)
T ss_pred             EcCCCceEEEEecCceEEEeeccHHHHHHHHHhh--ccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEeccc--c
Confidence            9999999999999999999999988877666554  45789999999999999999999999999998888876655  7


Q ss_pred             eeeeeEEEEC
Q 040370          153 TQLRFQAVFN  162 (228)
Q Consensus       153 ~~~~~~~~~~  162 (228)
                      ..++..++|.
T Consensus       374 kSWVs~VaFD  383 (636)
T KOG2394|consen  374 KSWVSVVAFD  383 (636)
T ss_pred             ccceeeEeec
Confidence            8888888887

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.76  E-value=2e-16  Score=111.49  Aligned_cols=188  Identities=11%  Similarity=0.234  Sum_probs=137.6

Q ss_pred             CcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCC-CCeEEEEecCCeEEEEeCCCC
Q 040370           19 THNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSST-GGMYVTASKDGAIRLWDGVSA   97 (228)
Q Consensus        19 ~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~v~iwd~~~~   97 (228)
                      +..+..++|++.-..+|++..|-.|++|+-.. ++...++...   ...|+|++|-|. +..|+.|+. +-|.+|.....
T Consensus        98 ~~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~s---QrnvtclawRPlsaselavgCr-~gIciW~~s~t  172 (445)
T KOG2139|consen   98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVS---QRNVTCLAWRPLSASELAVGCR-AGICIWSDSRT  172 (445)
T ss_pred             hcceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchh---hcceeEEEeccCCcceeeeeec-ceeEEEEcCcc
Confidence            45688899999888899999999999999776 3333333222   678999999995 456666665 55999975421


Q ss_pred             ----ce--------eeEEecccccceeEEEEECCCCCEEEEeeC-CCeEEEEEccCCeeEEEEecceeeeeeeEEEECCC
Q 040370           98 ----NC--------VRSIVGAHGTAEATSANFTKDQRFVLSCGK-DSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDT  164 (228)
Q Consensus        98 ----~~--------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (228)
                          ..        .+.++. .+..+|++++|++||..+++++. |..|.+||..++..+.....  ....+..+.|+|+
T Consensus       173 ln~~r~~~~~s~~~~qvl~~-pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~--glgg~slLkwSPd  249 (445)
T KOG2139|consen  173 LNANRNIRMMSTHHLQVLQD-PGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPK--GLGGFSLLKWSPD  249 (445)
T ss_pred             cccccccccccccchhheeC-CCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCccccccc--CCCceeeEEEcCC
Confidence                11        112222 23578999999999999999885 56799999999876655422  4556778999999


Q ss_pred             CcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEec
Q 040370          165 EEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCG  216 (228)
Q Consensus       165 ~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~  216 (228)
                      +.+++++.. |+..++|..........+. -..+.|....|+|+|++|+-+.
T Consensus       250 gd~lfaAt~-davfrlw~e~q~wt~erw~-lgsgrvqtacWspcGsfLLf~~  299 (445)
T KOG2139|consen  250 GDVLFAATC-DAVFRLWQENQSWTKERWI-LGSGRVQTACWSPCGSFLLFAC  299 (445)
T ss_pred             CCEEEEecc-cceeeeehhcccceeccee-ccCCceeeeeecCCCCEEEEEE
Confidence            999999777 7999999765554444442 3345899999999998765443

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.75  E-value=9.5e-17  Score=111.23  Aligned_cols=160  Identities=9%  Similarity=0.122  Sum_probs=132.2

Q ss_pred             ccceeeEEeCCCCCeEEEEecCCeEEEEeCCCCc---eeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEc-cC
Q 040370           65 NGAINQVRYSSTGGMYVTASKDGAIRLWDGVSAN---CVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEV-SS  140 (228)
Q Consensus        65 ~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~---~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~-~~  140 (228)
                      ..+|+|.+|++++..++.+-....|.||.....+   ...++..|  ...+++++|+|..+.|++++.|..-++|.. ..
T Consensus        10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~H--d~~vtgvdWap~snrIvtcs~drnayVw~~~~~   87 (361)
T KOG1523|consen   10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEH--DKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSG   87 (361)
T ss_pred             cCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhh--CcceeEEeecCCCCceeEccCCCCccccccCCC
Confidence            5789999999999999999999999999987665   45556655  789999999999999999999999999998 55


Q ss_pred             CeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCccee---EEeecCCCCCcEEEEeCCCCcEEEEecC
Q 040370          141 GRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKV---AKWSSNHIGAPRWIEHSPAEAAFITCGT  217 (228)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~s~~~  217 (228)
                      ++...++....+.....++.|+|.++.++++++ -..|.||-++..+.-   ..+...+.+.|++++|+|++-+|++|+.
T Consensus        88 ~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSg-ar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~  166 (361)
T KOG1523|consen   88 GTWKPTLVLLRINRAATCVKWSPKENKFAVGSG-ARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGST  166 (361)
T ss_pred             CeeccceeEEEeccceeeEeecCcCceEEeccC-ccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceeccccc
Confidence            555555544457788899999999999888776 488888877654432   1223467888999999999999999999


Q ss_pred             CCCEEEeeec
Q 040370          218 DRSVRFWKEI  227 (228)
Q Consensus       218 dg~i~vwd~~  227 (228)
                      |+..++|...
T Consensus       167 D~k~rVfSay  176 (361)
T KOG1523|consen  167 DGKCRVFSAY  176 (361)
T ss_pred             CcceeEEEEe
Confidence            9999999754

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.74  E-value=1.7e-14  Score=100.16  Aligned_cols=205  Identities=11%  Similarity=0.147  Sum_probs=141.7

Q ss_pred             ceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEccc-ceEEeeeccceeeeccceeeEEeCCCCCeEEE-EecCC
Q 040370           10 KRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNT-FQCYLSANVPEISVNGAINQVRYSSTGGMYVT-ASKDG   87 (228)
Q Consensus        10 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-~~~dg   87 (228)
                      .++........+|.++.+.+  +.|++.- .+.|.||...+ .+....+.....  ...+.+++-+.+..+|+. |-.-|
T Consensus        85 ~~~i~el~f~~~I~~V~l~r--~riVvvl-~~~I~VytF~~n~k~l~~~et~~N--PkGlC~~~~~~~k~~LafPg~k~G  159 (346)
T KOG2111|consen   85 ERCIIELSFNSEIKAVKLRR--DRIVVVL-ENKIYVYTFPDNPKLLHVIETRSN--PKGLCSLCPTSNKSLLAFPGFKTG  159 (346)
T ss_pred             CcEEEEEEeccceeeEEEcC--CeEEEEe-cCeEEEEEcCCChhheeeeecccC--CCceEeecCCCCceEEEcCCCccc
Confidence            34444456788999999965  4566665 46899999874 343333332211  122333333323334443 34569


Q ss_pred             eEEEEeCCCCce--eeEEecccccceeEEEEECCCCCEEEEeeCCCe-EEEEEccCCeeEEEEecceeeeeeeEEEECCC
Q 040370           88 AIRLWDGVSANC--VRSIVGAHGTAEATSANFTKDQRFVLSCGKDST-VKLWEVSSGRLVKQYLGATHTQLRFQAVFNDT  164 (228)
Q Consensus        88 ~v~iwd~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~-i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (228)
                      .|.|-|+...+.  ...+..|  ...|.|++.+.+|..+||++..|+ ||+||..+++.+..+........+++++|+|+
T Consensus       160 qvQi~dL~~~~~~~p~~I~AH--~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~  237 (346)
T KOG2111|consen  160 QVQIVDLASTKPNAPSIINAH--DSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPN  237 (346)
T ss_pred             eEEEEEhhhcCcCCceEEEcc--cCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCC
Confidence            999999987655  4566665  889999999999999999999997 89999999999999988778888999999999


Q ss_pred             CcEEEEeeCCCCeEEEEEcCCcceeEE-----------ee------------cCCCCCcEEEEeCCCCcEEEEecCCCCE
Q 040370          165 EEFVLSIDEPSNEIVIWDALTAEKVAK-----------WS------------SNHIGAPRWIEHSPAEAAFITCGTDRSV  221 (228)
Q Consensus       165 ~~~~~~~~~~d~~i~i~d~~~~~~~~~-----------~~------------~~~~~~v~~~~~~~~~~~l~s~~~dg~i  221 (228)
                      ..++++++. .|+++|+.++.......           ++            .-..++..-++|-.+.+.++..+.||.-
T Consensus       238 ~s~LavsSd-KgTlHiF~l~~~~~~~~~~SSl~~~~~~lpky~~S~wS~~~f~l~~~~~~~~~fg~~~nsvi~i~~Dgsy  316 (346)
T KOG2111|consen  238 SSWLAVSSD-KGTLHIFSLRDTENTEDESSSLSFKRLVLPKYFSSEWSFAKFQLPQGTQCIIAFGSETNTVIAICADGSY  316 (346)
T ss_pred             ccEEEEEcC-CCeEEEEEeecCCCCccccccccccccccchhcccceeEEEEEccCCCcEEEEecCCCCeEEEEEeCCcE
Confidence            999999766 59999998865331111           00            1123345556676665666666677764


Q ss_pred             E
Q 040370          222 R  222 (228)
Q Consensus       222 ~  222 (228)
                      .
T Consensus       317 ~  317 (346)
T KOG2111|consen  317 Y  317 (346)
T ss_pred             E
Confidence            3

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.74  E-value=8.3e-15  Score=112.26  Aligned_cols=192  Identities=15%  Similarity=0.148  Sum_probs=127.5

Q ss_pred             EEEeecCcceEEEEEeCCCCEEEEecCC---CeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEE-EEecCC-
Q 040370           13 FRVIQDTHNVRSVSFHPSGDFLLAGTDH---PIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYV-TASKDG-   87 (228)
Q Consensus        13 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~dg-   87 (228)
                      ..+..+...+...+|+|+|+.|+..+.+   ..|.+|++.+++.......     .+.+....|+|+|+.|+ +.+.+| 
T Consensus       192 ~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~-----~g~~~~~~~SpDG~~la~~~~~~g~  266 (430)
T PRK00178        192 VTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNF-----EGLNGAPAWSPDGSKLAFVLSKDGN  266 (430)
T ss_pred             eEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCC-----CCCcCCeEECCCCCEEEEEEccCCC
Confidence            3445677789999999999999865533   4689999988765432221     33455789999999776 444555 


Q ss_pred             -eEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeC-CC--eEEEEEccCCeeEEEEecceeeeeeeEEEECC
Q 040370           88 -AIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGK-DS--TVKLWEVSSGRLVKQYLGATHTQLRFQAVFND  163 (228)
Q Consensus        88 -~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~--~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (228)
                       .|.++|+.+++... +..+  ........|+||++.++..+. ++  .|+++|+.+++......   .........|+|
T Consensus       267 ~~Iy~~d~~~~~~~~-lt~~--~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~---~~~~~~~~~~Sp  340 (430)
T PRK00178        267 PEIYVMDLASRQLSR-VTNH--PAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTF---VGNYNARPRLSA  340 (430)
T ss_pred             ceEEEEECCCCCeEE-cccC--CCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeec---CCCCccceEECC
Confidence             58888998776443 3332  334566789999998776553 33  57888887766433221   112234567999


Q ss_pred             CCcEEEEeeCCCC--eEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCC
Q 040370          164 TEEFVLSIDEPSN--EIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTD  218 (228)
Q Consensus       164 ~~~~~~~~~~~d~--~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d  218 (228)
                      +++.++.....++  .|.++|+.+++..... ..  .......|+|+|+.++..+.+
T Consensus       341 dg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt-~~--~~~~~p~~spdg~~i~~~~~~  394 (430)
T PRK00178        341 DGKTLVMVHRQDGNFHVAAQDLQRGSVRILT-DT--SLDESPSVAPNGTMLIYATRQ  394 (430)
T ss_pred             CCCEEEEEEccCCceEEEEEECCCCCEEEcc-CC--CCCCCceECCCCCEEEEEEec
Confidence            9999988765444  5888998887653322 22  122346899999988766643

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.73  E-value=2.4e-17  Score=121.94  Aligned_cols=166  Identities=19%  Similarity=0.240  Sum_probs=128.5

Q ss_pred             ceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECC--CCCEEEEeeCCCeEEEEE
Q 040370           60 PEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTK--DQRFVLSCGKDSTVKLWE  137 (228)
Q Consensus        60 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~~d~~i~~wd  137 (228)
                      ..+| .+.|+|++|+.+|.+|++|+.|-.+.|||.-..+++..+...| ...|.++.|-|  +.+.+++|..|..|+++|
T Consensus        46 L~GH-~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgH-taNIFsvKFvP~tnnriv~sgAgDk~i~lfd  123 (758)
T KOG1310|consen   46 LTGH-TGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGH-TANIFSVKFVPYTNNRIVLSGAGDKLIKLFD  123 (758)
T ss_pred             hccc-cceecceeecCCCCEEeecCCcceEEeecchhcceeeeeeccc-ccceeEEeeeccCCCeEEEeccCcceEEEEe
Confidence            3445 9999999999999999999999999999999888888887765 88999999999  567899999999999999


Q ss_pred             ccCCee--------EEEEecceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEe-------e--cCCCCCc
Q 040370          138 VSSGRL--------VKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKW-------S--SNHIGAP  200 (228)
Q Consensus       138 ~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~-------~--~~~~~~v  200 (228)
                      +...+.        .....-..|...+..++..|++...+-++++||+|+-+|++.......-       .  ....-..
T Consensus       124 l~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~liel  203 (758)
T KOG1310|consen  124 LDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIEL  203 (758)
T ss_pred             cccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhhee
Confidence            975221        1111112255566677888999888888888999999999874322111       0  1122356


Q ss_pred             EEEEeCC-CCcEEEEecCCCCEEEeeec
Q 040370          201 RWIEHSP-AEAAFITCGTDRSVRFWKEI  227 (228)
Q Consensus       201 ~~~~~~~-~~~~l~s~~~dg~i~vwd~~  227 (228)
                      .++..+| +..+|+.|+.|-..++||.+
T Consensus       204 k~ltisp~rp~~laVGgsdpfarLYD~R  231 (758)
T KOG1310|consen  204 KCLTISPSRPYYLAVGGSDPFARLYDRR  231 (758)
T ss_pred             eeeeecCCCCceEEecCCCchhhhhhhh
Confidence            7889999 45689999999999999953

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.73  E-value=3.2e-15  Score=111.28  Aligned_cols=191  Identities=14%  Similarity=0.199  Sum_probs=154.5

Q ss_pred             CCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeC------C--------------CCCeEEEEecCCe
Q 040370           29 PSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYS------S--------------TGGMYVTASKDGA   88 (228)
Q Consensus        29 ~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~------~--------------~~~~l~~~~~dg~   88 (228)
                      |...++|....||.+++|+...++....+.... +..+..++..|.      |              +...++-|...|.
T Consensus         3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~-~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~   81 (541)
T KOG4547|consen    3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIA-SLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS   81 (541)
T ss_pred             chhheEeecCCCCeEEEEEccCceeeeeeccch-hccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence            456789999999999999999988766554432 224555555552      1              2236778888999


Q ss_pred             EEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEE
Q 040370           89 IRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFV  168 (228)
Q Consensus        89 v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (228)
                      |.++++..++....+....+.+.|.++.++.+-..|.+++.|..+..|+....+.++.+..  ....+..++.+|++..+
T Consensus        82 v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~--~~~~~~sl~is~D~~~l  159 (541)
T KOG4547|consen   82 VLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKE--QKPLVSSLCISPDGKIL  159 (541)
T ss_pred             EEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeecc--CCCccceEEEcCCCCEE
Confidence            9999999999999998767799999999999999999999999999999999888888876  56667889999998887


Q ss_pred             EEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCC-----CcEEEEe-cCCCCEEEeee
Q 040370          169 LSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPA-----EAAFITC-GTDRSVRFWKE  226 (228)
Q Consensus       169 ~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~l~s~-~~dg~i~vwd~  226 (228)
                      +++ +  ++|.+||+++++.+..+ .+|.++|+++.|..+     |.+++++ ..+..+.+|-+
T Consensus       160 ~~a-s--~~ik~~~~~~kevv~~f-tgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v  219 (541)
T KOG4547|consen  160 LTA-S--RQIKVLDIETKEVVITF-TGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVV  219 (541)
T ss_pred             Eec-c--ceEEEEEccCceEEEEe-cCCCcceEEEEEEEeccccccceeeeccccccceeEEEE
Confidence            764 3  89999999999999999 899999999999776     5665554 45566777754

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.73  E-value=2.4e-14  Score=99.43  Aligned_cols=177  Identities=12%  Similarity=0.094  Sum_probs=129.6

Q ss_pred             CeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCC-CCceeeEEecccccceeEEEEECC
Q 040370           41 PIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGV-SANCVRSIVGAHGTAEATSANFTK  119 (228)
Q Consensus        41 ~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~-~~~~~~~~~~~~~~~~i~~~~~~~  119 (228)
                      +.|.|||-....++..+..     ..+|.++.+.++  .+++.- .+.|.||... +.+.+..+....++....+++-+.
T Consensus        75 NkviIWDD~k~~~i~el~f-----~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~  146 (346)
T KOG2111|consen   75 NKVIIWDDLKERCIIELSF-----NSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTS  146 (346)
T ss_pred             ceEEEEecccCcEEEEEEe-----ccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhheeeeecccCCCceEeecCCC
Confidence            3577777444444443332     678899999765  355443 5789999987 556666666544344455554444


Q ss_pred             CCCEEEEe-eCCCeEEEEEccCCee--EEEEecceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCC
Q 040370          120 DQRFVLSC-GKDSTVKLWEVSSGRL--VKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNH  196 (228)
Q Consensus       120 ~~~~l~~~-~~d~~i~~wd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~  196 (228)
                      +..+|+.- -.-|.|.+-|+...+.  ...+..  |...+.+++.+.+|..+++++...--|||||..+|+.+.++..+-
T Consensus       147 ~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~A--H~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~  224 (346)
T KOG2111|consen  147 NKSLLAFPGFKTGQVQIVDLASTKPNAPSIINA--HDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGV  224 (346)
T ss_pred             CceEEEcCCCccceEEEEEhhhcCcCCceEEEc--ccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCC
Confidence            44555543 3568999999986554  244444  888899999999999999988764568999999999999986553


Q ss_pred             -CCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370          197 -IGAPRWIEHSPAEAAFITCGTDRSVRFWKEI  227 (228)
Q Consensus       197 -~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~  227 (228)
                       ...|.+++|||+..+|+.+|.-|++.||.+.
T Consensus       225 d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~  256 (346)
T KOG2111|consen  225 DRADIYCIAFSPNSSWLAVSSDKGTLHIFSLR  256 (346)
T ss_pred             chheEEEEEeCCCccEEEEEcCCCeEEEEEee
Confidence             4579999999999999999999999999874

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.73  E-value=6.7e-15  Score=112.48  Aligned_cols=193  Identities=14%  Similarity=0.150  Sum_probs=129.1

Q ss_pred             EEEeecCcceEEEEEeCCCCEEEEecCC---CeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEE-EEecCC-
Q 040370           13 FRVIQDTHNVRSVSFHPSGDFLLAGTDH---PIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYV-TASKDG-   87 (228)
Q Consensus        13 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~dg-   87 (228)
                      ..+..+...+...+|+|+|++|+.+..+   ..|++||+.+++.......     .+.+.+++|+|+++.|+ +.+.++ 
T Consensus       183 ~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~-----~~~~~~~~~spDg~~l~~~~~~~~~  257 (417)
T TIGR02800       183 QTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASF-----PGMNGAPAFSPDGSKLAVSLSKDGN  257 (417)
T ss_pred             EEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecC-----CCCccceEECCCCCEEEEEECCCCC
Confidence            3444566778999999999999876543   4799999988764332221     44566789999998776 444444 


Q ss_pred             -eEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCC-C--eEEEEEccCCeeEEEEecceeeeeeeEEEECC
Q 040370           88 -AIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKD-S--TVKLWEVSSGRLVKQYLGATHTQLRFQAVFND  163 (228)
Q Consensus        88 -~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-~--~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (228)
                       .|.+||+.++.... +..+  ........|+|+++.|+..+.. +  .|+++|+.+++.. .+..  .........|+|
T Consensus       258 ~~i~~~d~~~~~~~~-l~~~--~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~~--~~~~~~~~~~sp  331 (417)
T TIGR02800       258 PDIYVMDLDGKQLTR-LTNG--PGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR-RLTF--RGGYNASPSWSP  331 (417)
T ss_pred             ccEEEEECCCCCEEE-CCCC--CCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE-Eeec--CCCCccCeEECC
Confidence             58889988765433 3222  2334567899999988766543 3  5888888766543 3322  233456778999


Q ss_pred             CCcEEEEeeCCC--CeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCC
Q 040370          164 TEEFVLSIDEPS--NEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDR  219 (228)
Q Consensus       164 ~~~~~~~~~~~d--~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg  219 (228)
                      ++.+++.+....  ..|.+||+.++......  .. .......|+|+++.|+..+.++
T Consensus       332 dg~~i~~~~~~~~~~~i~~~d~~~~~~~~l~--~~-~~~~~p~~spdg~~l~~~~~~~  386 (417)
T TIGR02800       332 DGDLIAFVHREGGGFNIAVMDLDGGGERVLT--DT-GLDESPSFAPNGRMILYATTRG  386 (417)
T ss_pred             CCCEEEEEEccCCceEEEEEeCCCCCeEEcc--CC-CCCCCceECCCCCEEEEEEeCC
Confidence            999988876632  27888998875543222  11 2334568999999888777654

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.72  E-value=3.1e-16  Score=111.91  Aligned_cols=162  Identities=12%  Similarity=0.155  Sum_probs=131.3

Q ss_pred             ccceeeEEeCCCCCeEEEEecCCeEEEEeCCC------CceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEc
Q 040370           65 NGAINQVRYSSTGGMYVTASKDGAIRLWDGVS------ANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEV  138 (228)
Q Consensus        65 ~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~------~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~  138 (228)
                      .+.|+++.|+.++++|++|+.|..+++|+++.      .+++. +..++|...|.|++|...+..+++|..+++|..-|+
T Consensus        56 ~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~-~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDi  134 (609)
T KOG4227|consen   56 TGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIG-VMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDI  134 (609)
T ss_pred             ccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCce-eccCccccceEEEEEccCCeeEecCCCcceeEeeec
Confidence            88999999999999999999999999999763      23343 445566889999999999999999999999999999


Q ss_pred             cCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeE-E-eecCCCCCcEEEEeCCC-CcEEEEe
Q 040370          139 SSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVA-K-WSSNHIGAPRWIEHSPA-EAAFITC  215 (228)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~-~-~~~~~~~~v~~~~~~~~-~~~l~s~  215 (228)
                      ++.+.+..+........++.+..+|....++++.. ++.|.+||.+...... . .+.........+.|+|. ..+|++.
T Consensus       135 Et~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~-~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~  213 (609)
T KOG4227|consen  135 ETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTR-AKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVN  213 (609)
T ss_pred             ccceeeeeecccCcccceeecccCCCCceEEEEec-CceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEec
Confidence            99998888875555668888999998666666544 7999999998765222 1 12344556788999994 5678888


Q ss_pred             cCCCCEEEeeecC
Q 040370          216 GTDRSVRFWKEIL  228 (228)
Q Consensus       216 ~~dg~i~vwd~~l  228 (228)
                      +..+-+.+||++|
T Consensus       214 ~~~~G~~~~D~R~  226 (609)
T KOG4227|consen  214 SETGGPNVFDRRM  226 (609)
T ss_pred             cccCCCCceeecc
Confidence            9999999999875

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.72  E-value=4.6e-14  Score=104.99  Aligned_cols=188  Identities=12%  Similarity=0.103  Sum_probs=128.4

Q ss_pred             CEE-EEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCCCceeeEEecccccc
Q 040370           32 DFL-LAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTA  110 (228)
Q Consensus        32 ~~l-~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~  110 (228)
                      +++ ++-..++.|.+.|..+.+.+..+...    ...-..+.|+|||+++++++.||.|.++|+.+++.+.++..   ..
T Consensus         6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~----~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~---G~   78 (369)
T PF02239_consen    6 NLFYVVERGSGSVAVIDGATNKVVARIPTG----GAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKV---GG   78 (369)
T ss_dssp             GEEEEEEGGGTEEEEEETTT-SEEEEEE-S----TTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE----SS
T ss_pred             cEEEEEecCCCEEEEEECCCCeEEEEEcCC----CCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEec---CC
Confidence            344 45567899999999998877766542    12224477999999999999999999999999999999887   44


Q ss_pred             eeEEEEECCCCCEEEEee-CCCeEEEEEccCCeeEEEEeccee-----eeeeeEEEECCCCcEEEEeeCCCCeEEEEEcC
Q 040370          111 EATSANFTKDQRFVLSCG-KDSTVKLWEVSSGRLVKQYLGATH-----TQLRFQAVFNDTEEFVLSIDEPSNEIVIWDAL  184 (228)
Q Consensus       111 ~i~~~~~~~~~~~l~~~~-~d~~i~~wd~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~  184 (228)
                      ...++++++||++++++. .++.+.++|.++.+.+..+.....     ...+..+..+|....+++.-.+-+.|.+-|..
T Consensus        79 ~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~  158 (369)
T PF02239_consen   79 NPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYS  158 (369)
T ss_dssp             EEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETT
T ss_pred             CcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEec
Confidence            668899999999988775 688999999999999888764322     22445666777777555555545899888987


Q ss_pred             CcceeEEeecCCCCCcEEEEeCCCCcEEEEe-cCCCCEEEeee
Q 040370          185 TAEKVAKWSSNHIGAPRWIEHSPAEAAFITC-GTDRSVRFWKE  226 (228)
Q Consensus       185 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~~dg~i~vwd~  226 (228)
                      ..+.+...............|+|++++++.+ ..++.|-++|.
T Consensus       159 d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~  201 (369)
T PF02239_consen  159 DPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDT  201 (369)
T ss_dssp             TSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEET
T ss_pred             cccccceeeecccccccccccCcccceeeecccccceeEEEee
Confidence            7655443223345567789999999987664 45566777764

...

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.71  E-value=1.3e-15  Score=116.31  Aligned_cols=172  Identities=13%  Similarity=0.070  Sum_probs=115.2

Q ss_pred             CCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecC---CeEEEEeCCCCceeeEEecccccceeEEEE
Q 040370           40 HPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKD---GAIRLWDGVSANCVRSIVGAHGTAEATSAN  116 (228)
Q Consensus        40 d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~v~iwd~~~~~~~~~~~~~~~~~~i~~~~  116 (228)
                      +..|.+||.+.... ..+.   .+ ...+....|+|+|+.|+..+.+   ..|++||+.+++.......   .......+
T Consensus       183 ~~~i~i~d~dg~~~-~~lt---~~-~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~---~g~~~~~~  254 (429)
T PRK01742        183 PYEVRVADYDGFNQ-FIVN---RS-SQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASF---RGHNGAPA  254 (429)
T ss_pred             eEEEEEECCCCCCc-eEec---cC-CCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecC---CCccCcee
Confidence            46899999876542 2221   12 5678999999999999887654   4699999988764332211   22334689


Q ss_pred             ECCCCCEEEEee-CCCeEEE--EEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEee
Q 040370          117 FTKDQRFVLSCG-KDSTVKL--WEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWS  193 (228)
Q Consensus       117 ~~~~~~~l~~~~-~d~~i~~--wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~  193 (228)
                      |+|||+.|+.++ .+|.+.+  ||+.+++. ..+..  +........|+|+++.++.++..++...+|++..........
T Consensus       255 wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~-~~lt~--~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l  331 (429)
T PRK01742        255 FSPDGSRLAFASSKDGVLNIYVMGANGGTP-SQLTS--GAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV  331 (429)
T ss_pred             ECCCCCEEEEEEecCCcEEEEEEECCCCCe-Eeecc--CCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe
Confidence            999999888764 6776555  56655543 33433  344567889999999888777667888888775432222221


Q ss_pred             cCCCCCcEEEEeCCCCcEEEEecCCCCEEEeee
Q 040370          194 SNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKE  226 (228)
Q Consensus       194 ~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~  226 (228)
                       .+..  ....|+|+|++|+..+.++ +.+||+
T Consensus       332 -~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl  360 (429)
T PRK01742        332 -GGRG--YSAQISADGKTLVMINGDN-VVKQDL  360 (429)
T ss_pred             -cCCC--CCccCCCCCCEEEEEcCCC-EEEEEC
Confidence             3333  4578999999998888765 455775

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.71  E-value=1.5e-17  Score=120.40  Aligned_cols=193  Identities=16%  Similarity=0.206  Sum_probs=157.3

Q ss_pred             ecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCC
Q 040370           17 QDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVS   96 (228)
Q Consensus        17 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~   96 (228)
                      .-...|.++.|-.+.+++|++- ...+.|||-. |..+..+..     ...|..+.|-|..-+|++++..|.++.-|+.+
T Consensus       168 ~v~Etv~Dv~~LHneq~~AVAQ-K~y~yvYD~~-GtElHClk~-----~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~  240 (545)
T KOG1272|consen  168 NVMETVRDVTFLHNEQFFAVAQ-KKYVYVYDNN-GTELHCLKR-----HIRVARLEFLPYHFLLVAASEAGFLKYQDVST  240 (545)
T ss_pred             ehhhhhhhhhhhcchHHHHhhh-hceEEEecCC-CcEEeehhh-----cCchhhhcccchhheeeecccCCceEEEeech
Confidence            3456788888888888888775 4678999965 443343332     56789999999988999999999999999999


Q ss_pred             CceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCC
Q 040370           97 ANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSN  176 (228)
Q Consensus        97 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  176 (228)
                      |+.+..+...  .+.+..+.-+|-+..+-+|...|+|.+|.....+++..+..  |...+.++++.++|.|++++|- |.
T Consensus       241 GklVa~~~t~--~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLc--H~g~V~siAv~~~G~YMaTtG~-Dr  315 (545)
T KOG1272|consen  241 GKLVASIRTG--AGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILC--HRGPVSSIAVDRGGRYMATTGL-DR  315 (545)
T ss_pred             hhhhHHHHcc--CCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHHHh--cCCCcceEEECCCCcEEeeccc-cc
Confidence            9999888776  66788889999888999999999999999988888777765  7889999999999999999887 79


Q ss_pred             eEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEee
Q 040370          177 EIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWK  225 (228)
Q Consensus       177 ~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd  225 (228)
                      .++|||+++...+.+...  ..+...+++|..|  +++.|....|.+|.
T Consensus       316 ~~kIWDlR~~~ql~t~~t--p~~a~~ls~Sqkg--lLA~~~G~~v~iw~  360 (545)
T KOG1272|consen  316 KVKIWDLRNFYQLHTYRT--PHPASNLSLSQKG--LLALSYGDHVQIWK  360 (545)
T ss_pred             ceeEeeeccccccceeec--CCCcccccccccc--ceeeecCCeeeeeh
Confidence            999999999988877743  4467778888665  34444555788885

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.71  E-value=1.5e-13  Score=102.26  Aligned_cols=164  Identities=16%  Similarity=0.201  Sum_probs=113.8

Q ss_pred             eEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEe-cCCeEEEEeCCCCcee
Q 040370           22 VRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTAS-KDGAIRLWDGVSANCV  100 (228)
Q Consensus        22 v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~v~iwd~~~~~~~  100 (228)
                      -..+.|+||++++++++.||.|.++|+.+.+.+.....     ......++++++|++++++. .++.+.++|.++.+.+
T Consensus        39 h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~-----G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v  113 (369)
T PF02239_consen   39 HAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKV-----GGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPV  113 (369)
T ss_dssp             EEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE------SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EE
T ss_pred             eeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEec-----CCCcceEEEcCCCCEEEEEecCCCceeEeccccccce
Confidence            34578999999999999999999999999998877765     44568899999999888765 6899999999999999


Q ss_pred             eEEeccc-----ccceeEEEEECCCCCEEEEeeC-CCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCC
Q 040370          101 RSIVGAH-----GTAEATSANFTKDQRFVLSCGK-DSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEP  174 (228)
Q Consensus       101 ~~~~~~~-----~~~~i~~~~~~~~~~~l~~~~~-d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (228)
                      +.+....     ....+.++..+|....++..-. .+.|.+.|....+.+..-. ...........++|+++|++++...
T Consensus       114 ~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~-i~~g~~~~D~~~dpdgry~~va~~~  192 (369)
T PF02239_consen  114 KTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTT-IKVGRFPHDGGFDPDGRYFLVAANG  192 (369)
T ss_dssp             EEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEE-EE--TTEEEEEE-TTSSEEEEEEGG
T ss_pred             eecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceee-ecccccccccccCcccceeeecccc
Confidence            8886542     1346778888888775555544 5889888987654433211 1134455678999999998887666


Q ss_pred             CCeEEEEEcCCcceeEE
Q 040370          175 SNEIVIWDALTAEKVAK  191 (228)
Q Consensus       175 d~~i~i~d~~~~~~~~~  191 (228)
                      .+.|-++|.++++....
T Consensus       193 sn~i~viD~~~~k~v~~  209 (369)
T PF02239_consen  193 SNKIAVIDTKTGKLVAL  209 (369)
T ss_dssp             GTEEEEEETTTTEEEEE
T ss_pred             cceeEEEeeccceEEEE
Confidence            78899999887765543

...

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.71  E-value=1.6e-15  Score=119.47  Aligned_cols=193  Identities=15%  Similarity=0.215  Sum_probs=147.9

Q ss_pred             EEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCCCceeeEEe
Q 040370           25 VSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIV  104 (228)
Q Consensus        25 ~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~  104 (228)
                      ..+.-+...++.++.++.+.+||...+.............-....-+.++++.-++++|+.-+.|.+|+....+....+.
T Consensus        93 ~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~  172 (967)
T KOG0974|consen   93 AKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLK  172 (967)
T ss_pred             cchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCcceec
Confidence            33444667888888889999999988776555543322111222334456677799999999999999987444444466


Q ss_pred             cccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEE-EEecceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEc
Q 040370          105 GAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVK-QYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDA  183 (228)
Q Consensus       105 ~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~  183 (228)
                      +|  .+.+.++.++.||.++++.+.|.++++|++++.+... ...+  |...+..+++.|.  .+++.+. |.+.++|+.
T Consensus       173 GH--eG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fg--HsaRvw~~~~~~n--~i~t~ge-dctcrvW~~  245 (967)
T KOG0974|consen  173 GH--EGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFG--HSARVWACCFLPN--RIITVGE-DCTCRVWGV  245 (967)
T ss_pred             cc--CCceEEEEEccCCcEEEEEecCcceeeeecccccccCccccc--ccceeEEEEeccc--eeEEecc-ceEEEEEec
Confidence            65  7899999999999999999999999999999987765 3333  8888999999998  6666554 899999975


Q ss_pred             CCcceeEEeecCCC-CCcEEEEeCCCCcEEEEecCCCCEEEeee
Q 040370          184 LTAEKVAKWSSNHI-GAPRWIEHSPAEAAFITCGTDRSVRFWKE  226 (228)
Q Consensus       184 ~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~s~~~dg~i~vwd~  226 (228)
                       ++..+..+ .+|. ..+..++..+....++|++.|+.+++|++
T Consensus       246 -~~~~l~~y-~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l  287 (967)
T KOG0974|consen  246 -NGTQLEVY-DEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDL  287 (967)
T ss_pred             -ccceehhh-hhhhhcceeEEEEcCCceEEEeeccCcchhhhhh
Confidence             44455555 4554 57999999999999999999999999986

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.70  E-value=3.4e-15  Score=111.16  Aligned_cols=209  Identities=11%  Similarity=0.187  Sum_probs=150.9

Q ss_pred             EEeecCcceEEEEEeCCCCEE-EEecCCCeEEEEEcccceEEeeecc-------------------------------ce
Q 040370           14 RVIQDTHNVRSVSFHPSGDFL-LAGTDHPIAHLYDVNTFQCYLSANV-------------------------------PE   61 (228)
Q Consensus        14 ~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~vw~~~~~~~~~~~~~-------------------------------~~   61 (228)
                      +-+.++..-+.|..+|||+|+ |+|.....|++||+.+.........                               ..
T Consensus        46 Qdfe~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G  125 (703)
T KOG2321|consen   46 QDFEMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYG  125 (703)
T ss_pred             HhcCCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcC
Confidence            335688889999999999986 5678899999999876432211000                               00


Q ss_pred             eeeccc----eeeEEeCCCCCeEEEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEE
Q 040370           62 ISVNGA----INQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWE  137 (228)
Q Consensus        62 ~~~~~~----i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd  137 (228)
                      .|+.-.    -..++++.-..-|+.++....|+-++++.|+.+..+...  ...++++..++...+|++|+.+|.|..||
T Consensus       126 ~hy~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~--~~~lN~v~in~~hgLla~Gt~~g~VEfwD  203 (703)
T KOG2321|consen  126 RHYRTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETD--SGELNVVSINEEHGLLACGTEDGVVEFWD  203 (703)
T ss_pred             eeeeeecCcCCccccccCCCccEEEeecCcceEEEEccccccccccccc--cccceeeeecCccceEEecccCceEEEec
Confidence            111111    133444432223455555567888899999998888775  57899999999999999999999999999


Q ss_pred             ccCCeeEEEEecce---------eeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCC
Q 040370          138 VSSGRLVKQYLGAT---------HTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPA  208 (228)
Q Consensus       138 ~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~  208 (228)
                      .+....+..+....         ....++++.|+.+|-.+.++.+ +|.+.|||+++.+++..-..+..-+|..+.|.+.
T Consensus       204 pR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts-~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~  282 (703)
T KOG2321|consen  204 PRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTS-TGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDT  282 (703)
T ss_pred             chhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeecc-CCcEEEEEcccCCceeecccCCccceeeeccccc
Confidence            99877666654322         2234788999998888777666 6999999999999988765566678999999875


Q ss_pred             --CcEEEEecCCCCEEEeee
Q 040370          209 --EAAFITCGTDRSVRFWKE  226 (228)
Q Consensus       209 --~~~l~s~~~dg~i~vwd~  226 (228)
                        +..++|. ....++|||.
T Consensus       283 ~~q~~v~S~-Dk~~~kiWd~  301 (703)
T KOG2321|consen  283 DQQNKVVSM-DKRILKIWDE  301 (703)
T ss_pred             CCCceEEec-chHHhhhccc
Confidence              4456554 4567899984

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.70  E-value=1.5e-15  Score=112.97  Aligned_cols=193  Identities=18%  Similarity=0.272  Sum_probs=149.0

Q ss_pred             eEEEEEeC-CCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCCCcee
Q 040370           22 VRSVSFHP-SGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANCV  100 (228)
Q Consensus        22 v~~~~~~~-~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~  100 (228)
                      -..++++. ...+++.| ....|+-++++.|..+..+...    .+.++++..++...+|++|+.+|.|..||.+.....
T Consensus       136 GRDm~y~~~scDly~~g-sg~evYRlNLEqGrfL~P~~~~----~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv  210 (703)
T KOG2321|consen  136 GRDMKYHKPSCDLYLVG-SGSEVYRLNLEQGRFLNPFETD----SGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRV  210 (703)
T ss_pred             CccccccCCCccEEEee-cCcceEEEEccccccccccccc----cccceeeeecCccceEEecccCceEEEecchhhhhh
Confidence            34556654 34444444 4457888899999887776654    578999999999899999999999999999988776


Q ss_pred             eEEeccc---------ccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCC--CcEEE
Q 040370          101 RSIVGAH---------GTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDT--EEFVL  169 (228)
Q Consensus       101 ~~~~~~~---------~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~  169 (228)
                      ..+....         ....|+++.|+.+|-.+++|..+|.+.+||+++.+++..- .|....++..+.|.+.  +..++
T Consensus       211 ~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~k-dh~~e~pi~~l~~~~~~~q~~v~  289 (703)
T KOG2321|consen  211 GTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVK-DHGYELPIKKLDWQDTDQQNKVV  289 (703)
T ss_pred             eeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeec-ccCCccceeeecccccCCCceEE
Confidence            6665432         1235999999999999999999999999999998776543 4446677778888765  34444


Q ss_pred             EeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEe
Q 040370          170 SIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFW  224 (228)
Q Consensus       170 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vw  224 (228)
                      +..  ...++|||-.+|+....+  .....++.+++-|++.+++++-.++.+..|
T Consensus       290 S~D--k~~~kiWd~~~Gk~~asi--Ept~~lND~C~~p~sGm~f~Ane~~~m~~y  340 (703)
T KOG2321|consen  290 SMD--KRILKIWDECTGKPMASI--EPTSDLNDFCFVPGSGMFFTANESSKMHTY  340 (703)
T ss_pred             ecc--hHHhhhcccccCCceeec--cccCCcCceeeecCCceEEEecCCCcceeE
Confidence            433  489999999999998887  345569999999999999999887766544

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.69  E-value=5.2e-14  Score=107.87  Aligned_cols=189  Identities=16%  Similarity=0.146  Sum_probs=121.4

Q ss_pred             EeecCcceEEEEEeCCCCEEEEecC-C--CeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEE-EecCCe--
Q 040370           15 VIQDTHNVRSVSFHPSGDFLLAGTD-H--PIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVT-ASKDGA--   88 (228)
Q Consensus        15 ~~~~~~~v~~~~~~~~~~~l~~~~~-d--~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-~~~dg~--   88 (228)
                      +..+...+.+..|+|||+.|+..+. +  ..|.++|+.+++.......     .+......|+|+|+.|+. .+.+|.  
T Consensus       213 l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~-----~g~~~~~~wSPDG~~La~~~~~~g~~~  287 (448)
T PRK04792        213 LLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSF-----PGINGAPRFSPDGKKLALVLSKDGQPE  287 (448)
T ss_pred             eecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCC-----CCCcCCeeECCCCCEEEEEEeCCCCeE
Confidence            3345667889999999999886543 2  3688889988765332221     223456899999997764 556664  


Q ss_pred             EEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeC-CC--eEEEEEccCCeeEEEEecceeeeeeeEEEECCCC
Q 040370           89 IRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGK-DS--TVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTE  165 (228)
Q Consensus        89 v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~--~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (228)
                      |.++|+.+++... +..+  ........|+||++.++..+. ++  .|+++|+.+++... +..  .........|+|++
T Consensus       288 Iy~~dl~tg~~~~-lt~~--~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~-Lt~--~g~~~~~~~~SpDG  361 (448)
T PRK04792        288 IYVVDIATKALTR-ITRH--RAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSR-LTF--EGEQNLGGSITPDG  361 (448)
T ss_pred             EEEEECCCCCeEE-CccC--CCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-Eec--CCCCCcCeeECCCC
Confidence            7778888776433 3322  334567889999998876553 33  57777887765433 221  11223456899999


Q ss_pred             cEEEEeeCCCC--eEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecC
Q 040370          166 EFVLSIDEPSN--EIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGT  217 (228)
Q Consensus       166 ~~~~~~~~~d~--~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~  217 (228)
                      ++++.++..++  .|.++|+.+++..... ...  ......|+|+|+.|+..+.
T Consensus       362 ~~l~~~~~~~g~~~I~~~dl~~g~~~~lt-~~~--~d~~ps~spdG~~I~~~~~  412 (448)
T PRK04792        362 RSMIMVNRTNGKFNIARQDLETGAMQVLT-STR--LDESPSVAPNGTMVIYSTT  412 (448)
T ss_pred             CEEEEEEecCCceEEEEEECCCCCeEEcc-CCC--CCCCceECCCCCEEEEEEe
Confidence            99888766445  4556787777643222 221  2224579999998776554

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.69  E-value=3.2e-15  Score=104.44  Aligned_cols=189  Identities=17%  Similarity=0.246  Sum_probs=136.8

Q ss_pred             EEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEE-EEecCCeEEEEeCCCCceeeE
Q 040370           24 SVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYV-TASKDGAIRLWDGVSANCVRS  102 (228)
Q Consensus        24 ~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~dg~v~iwd~~~~~~~~~  102 (228)
                      -++|+|+|+++|+.++- .+.|-|.++.+..+.+..     -..|.-+.|..+..+++ ....|+.|.+|++...+-..+
T Consensus        13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~c-----ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ck   86 (447)
T KOG4497|consen   13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLC-----LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCK   86 (447)
T ss_pred             ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHHH-----HHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEE
Confidence            36799999999999876 777888887665444433     45678889998776554 557889999999998887777


Q ss_pred             EecccccceeEEEEECCCCCE-EEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCC-------
Q 040370          103 IVGAHGTAEATSANFTKDQRF-VLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEP-------  174 (228)
Q Consensus       103 ~~~~~~~~~i~~~~~~~~~~~-l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------  174 (228)
                      +...  ...+.+++|+|||+. |.+..-+-.|.+|.+.+.+... +..  ....+...+|+|++++.+.....       
T Consensus        87 Ideg--~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~-~~~--pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~  161 (447)
T KOG4497|consen   87 IDEG--QAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYL-LPH--PKTNVKGYAFHPDGQFCAILSRRDCKDYVQ  161 (447)
T ss_pred             eccC--CCcceeeeECCCcceEeeeecceeEEEEEEeccceeEE-ecc--cccCceeEEECCCCceeeeeecccHHHHHH
Confidence            7665  778999999999965 5566678899999998765433 222  22334678899999988775443       


Q ss_pred             ----------------------------CCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEee
Q 040370          175 ----------------------------SNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWK  225 (228)
Q Consensus       175 ----------------------------d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd  225 (228)
                                                  +..+.+||---...+...  .-.-.+..++|+|.+++|+.|+.|+.+++-+
T Consensus       162 i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aY--e~~lG~k~v~wsP~~qflavGsyD~~lrvln  238 (447)
T KOG4497|consen  162 ISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAY--ERGLGLKFVEWSPCNQFLAVGSYDQMLRVLN  238 (447)
T ss_pred             HHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeee--eeccceeEEEeccccceEEeeccchhhhhhc
Confidence                                        234555653322222222  1234688899999999999999999998744

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.68  E-value=7.6e-16  Score=112.32  Aligned_cols=212  Identities=20%  Similarity=0.280  Sum_probs=143.5

Q ss_pred             EEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeecc---------------------------------
Q 040370           13 FRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANV---------------------------------   59 (228)
Q Consensus        13 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~---------------------------------   59 (228)
                      .++..|.+.|..+.|+..|..|++|+.|..|.+||...+.....+..                                 
T Consensus       136 ~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~  215 (559)
T KOG1334|consen  136 KKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSE  215 (559)
T ss_pred             hcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeee
Confidence            45568999999999999999999999999999999865443222110                                 


Q ss_pred             -----------ceeeeccceeeEEeCCC-CCeEEEEecCCeEEEEeCCCCceeeEEecc---------------------
Q 040370           60 -----------PEISVNGAINQVRYSST-GGMYVTASKDGAIRLWDGVSANCVRSIVGA---------------------  106 (228)
Q Consensus        60 -----------~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~---------------------  106 (228)
                                 ....|.++|..++.-|+ ...|.+++.|+.+.-.|++.......+...                     
T Consensus       216 i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~  295 (559)
T KOG1334|consen  216 ILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTN  295 (559)
T ss_pred             eccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCcc
Confidence                       01223667777777774 346778888888888887664332221110                     


Q ss_pred             --------------------------------------cccceeEEEEECCCCCEEEEeeCCCeEEEEEccC--C-----
Q 040370          107 --------------------------------------HGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSS--G-----  141 (228)
Q Consensus       107 --------------------------------------~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~--~-----  141 (228)
                                                            .....|++++|+.++.-|+++..|-.|+++.-.-  |     
T Consensus       296 ~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~  375 (559)
T KOG1334|consen  296 EFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDP  375 (559)
T ss_pred             ccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCC
Confidence                                                  0123456666665555555555666666663211  1     


Q ss_pred             -----eeEE-EEecceeeeeeeEEEEC-CCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEE
Q 040370          142 -----RLVK-QYLGATHTQLRFQAVFN-DTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFIT  214 (228)
Q Consensus       142 -----~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s  214 (228)
                           ..+. .+++|.....+..+-|- |...|+++ |++-|.|.||+-.+++.+..+ .+...-|+|+.=+|--..||+
T Consensus       376 ~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvS-GSDCGhIFiW~K~t~eii~~M-egDr~VVNCLEpHP~~PvLAs  453 (559)
T KOG1334|consen  376 SSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVS-GSDCGHIFIWDKKTGEIIRFM-EGDRHVVNCLEPHPHLPVLAS  453 (559)
T ss_pred             CcchhhccchhhcccccccccceeeeccCccceEEe-cCccceEEEEecchhHHHHHh-hcccceEeccCCCCCCchhhc
Confidence                 1112 25565555555566544 55566555 666799999998888877776 555559999999999999999


Q ss_pred             ecCCCCEEEeee
Q 040370          215 CGTDRSVRFWKE  226 (228)
Q Consensus       215 ~~~dg~i~vwd~  226 (228)
                      +|-|.-||||-.
T Consensus       454 SGid~DVKIWTP  465 (559)
T KOG1334|consen  454 SGIDHDVKIWTP  465 (559)
T ss_pred             cCCccceeeecC
Confidence            999999999964

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.68  E-value=1.7e-14  Score=111.97  Aligned_cols=201  Identities=19%  Similarity=0.261  Sum_probs=148.0

Q ss_pred             eEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCC--Cce
Q 040370           22 VRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVS--ANC   99 (228)
Q Consensus        22 v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~--~~~   99 (228)
                      -.++.+++.+.+.+..-.. .+.+|+..+............+|.-.+++.++||.++++++|..||.|.+|.--.  ...
T Consensus       163 ~~~I~~~~~ge~~~i~~~~-~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~  241 (792)
T KOG1963|consen  163 PKSIVDNNSGEFKGIVHMC-KIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDS  241 (792)
T ss_pred             CccEEEcCCceEEEEEEee-eEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEecccccccc
Confidence            4667788888777766654 5788888775522222222334466689999999999999999999999996322  222


Q ss_pred             eeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCCeEE
Q 040370          100 VRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIV  179 (228)
Q Consensus       100 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~  179 (228)
                      ...-..|=|..+|++++|+++|.+|++|+..+.+.+|.+.+++  +++. +.-...+..+.++|++.+.....+ |+.|.
T Consensus       242 ~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~--kqfL-PRLgs~I~~i~vS~ds~~~sl~~~-DNqI~  317 (792)
T KOG1963|consen  242 ETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK--KQFL-PRLGSPILHIVVSPDSDLYSLVLE-DNQIH  317 (792)
T ss_pred             ccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCC--cccc-cccCCeeEEEEEcCCCCeEEEEec-CceEE
Confidence            2222223236799999999999999999999999999999987  2232 236778889999999999888777 89999


Q ss_pred             EEEcCCcceeEEee----------cCCCCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370          180 IWDALTAEKVAKWS----------SNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEI  227 (228)
Q Consensus       180 i~d~~~~~~~~~~~----------~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~  227 (228)
                      +....+.+....+.          ....+-.+.+.++|..+.++-.+..|.|.+||+.
T Consensus       318 li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~  375 (792)
T KOG1963|consen  318 LIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLY  375 (792)
T ss_pred             EEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEecc
Confidence            99876655433331          1234456778999977788889999999999964

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.66  E-value=1.5e-14  Score=102.85  Aligned_cols=181  Identities=15%  Similarity=0.118  Sum_probs=138.1

Q ss_pred             cceEEEEEeCCC-CEEEEecCC--CeEEEEEcccceEEeeecccee-----eeccceeeEEeCCC--CCeEEEEecCCeE
Q 040370           20 HNVRSVSFHPSG-DFLLAGTDH--PIAHLYDVNTFQCYLSANVPEI-----SVNGAINQVRYSST--GGMYVTASKDGAI   89 (228)
Q Consensus        20 ~~v~~~~~~~~~-~~l~~~~~d--~~i~vw~~~~~~~~~~~~~~~~-----~~~~~i~~~~~~~~--~~~l~~~~~dg~v   89 (228)
                      .++..+.-+|.. ..+|+|+..  ..+.+||++..+.+...+....     ...-.++++.|-|.  ...|+++..-+.+
T Consensus       149 ~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqv  228 (412)
T KOG3881|consen  149 PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQV  228 (412)
T ss_pred             CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeE
Confidence            455666666644 455668888  8899999998866554432211     11234678889887  7899999999999


Q ss_pred             EEEeCCCCc-eeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEE-EecceeeeeeeEEEECCCCcE
Q 040370           90 RLWDGVSAN-CVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQ-YLGATHTQLRFQAVFNDTEEF  167 (228)
Q Consensus        90 ~iwd~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  167 (228)
                      ++||.+.++ ++..+...  ..+++++...|+++.+++|..-+.+..+|++.++.... +.+  ....+..+..+|..++
T Consensus       229 R~YDt~~qRRPV~~fd~~--E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg--~tGsirsih~hp~~~~  304 (412)
T KOG3881|consen  229 RLYDTRHQRRPVAQFDFL--ENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKG--ITGSIRSIHCHPTHPV  304 (412)
T ss_pred             EEecCcccCcceeEeccc--cCcceeeeecCCCcEEEEecccchhheecccCceeeccccCC--ccCCcceEEEcCCCce
Confidence            999999764 55555554  67899999999999999999999999999999988776 554  5677888999999999


Q ss_pred             EEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCC
Q 040370          168 VLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSP  207 (228)
Q Consensus       168 ~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~  207 (228)
                      ++++|- |+.+||+|+++.+.+....  -.+.++++-+.+
T Consensus       305 las~GL-DRyvRIhD~ktrkll~kvY--vKs~lt~il~~~  341 (412)
T KOG3881|consen  305 LASCGL-DRYVRIHDIKTRKLLHKVY--VKSRLTFILLRD  341 (412)
T ss_pred             EEeecc-ceeEEEeecccchhhhhhh--hhccccEEEecC
Confidence            988776 8999999999976665542  234566666654

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.66  E-value=1.1e-16  Score=123.57  Aligned_cols=204  Identities=12%  Similarity=0.217  Sum_probs=147.0

Q ss_pred             ceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeE
Q 040370           10 KRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAI   89 (228)
Q Consensus        10 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v   89 (228)
                      .......+|.+.|+.++.+.++-++++++.|..|++|.+..+.++..+.   +| .+.|++++|+|-.    +.+.||++
T Consensus       223 ~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvsvLr---gh-tgavtaiafsP~~----sss~dgt~  294 (1113)
T KOG0644|consen  223 RCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVSVLR---GH-TGAVTAIAFSPRA----SSSDDGTC  294 (1113)
T ss_pred             hhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCchHHHHh---cc-ccceeeeccCccc----cCCCCCce
Confidence            3445566999999999999999999999999999999999998776555   34 8999999999954    77889999


Q ss_pred             EEEeCCCCceeeEEe---cccccceeEEEEECCCCC-------------------------------------EEEEeeC
Q 040370           90 RLWDGVSANCVRSIV---GAHGTAEATSANFTKDQR-------------------------------------FVLSCGK  129 (228)
Q Consensus        90 ~iwd~~~~~~~~~~~---~~~~~~~i~~~~~~~~~~-------------------------------------~l~~~~~  129 (228)
                      ++||.+- .......   .......+.++.|..++.                                     +.+++-.
T Consensus       295 ~~wd~r~-~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~  373 (1113)
T KOG0644|consen  295 RIWDARL-EPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARN  373 (1113)
T ss_pred             Eeccccc-cccccCCCCCCcccccceeeeeccccccccccccCCcccccchhhHhhhhccceEEEeccccccccceeeee
Confidence            9999871 1000000   000011222222222222                                     2223333


Q ss_pred             CCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCC
Q 040370          130 DSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAE  209 (228)
Q Consensus       130 d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~  209 (228)
                      +-.+.+|++.++...+.+.+  +....+.+.++|-+..++.+.+.||...|||+-.|.+......+| +.+...+|+++|
T Consensus       374 ~~~~~vwnl~~g~l~H~l~g--hsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh-~kl~d~kFSqdg  450 (1113)
T KOG0644|consen  374 DHRLCVWNLYTGQLLHNLMG--HSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGH-GKLVDGKFSQDG  450 (1113)
T ss_pred             eeEeeeeecccchhhhhhcc--cccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeeccc-ceeeccccCCCC
Confidence            44567777777777777666  566677888999998888888889999999999998888776564 556678999999


Q ss_pred             cEEEEecCCCCEEEee
Q 040370          210 AAFITCGTDRSVRFWK  225 (228)
Q Consensus       210 ~~l~s~~~dg~i~vwd  225 (228)
                      ..++....-|.+.|..
T Consensus       451 ts~~lsd~hgql~i~g  466 (1113)
T KOG0644|consen  451 TSIALSDDHGQLYILG  466 (1113)
T ss_pred             ceEecCCCCCceEEec
Confidence            9888877777777653

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.66  E-value=3.1e-14  Score=108.63  Aligned_cols=175  Identities=11%  Similarity=0.105  Sum_probs=117.0

Q ss_pred             CcceEEEEEeCCCCEEEEe-cCCC--eEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecC-Ce--EEEE
Q 040370           19 THNVRSVSFHPSGDFLLAG-TDHP--IAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKD-GA--IRLW   92 (228)
Q Consensus        19 ~~~v~~~~~~~~~~~l~~~-~~d~--~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g~--v~iw   92 (228)
                      ...+...+|+|||+.|+.. +.+|  .|.+||+++++.......     ...+....|+|+|+.|+..+.+ +.  |.++
T Consensus       242 ~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt~~-----~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~  316 (429)
T PRK03629        242 PRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDG-----RSNNTEPTWFPDSQNLAYTSDQAGRPQVYKV  316 (429)
T ss_pred             CCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEccCC-----CCCcCceEECCCCCEEEEEeCCCCCceEEEE
Confidence            3445578999999988854 4344  588999988765432221     3456789999999988766654 44  5555


Q ss_pred             eCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCC---CeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEE
Q 040370           93 DGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKD---STVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVL  169 (228)
Q Consensus        93 d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (228)
                      |+.+++.. .+...  ........|+|+|++++..+.+   ..|.+||+.+++.. .+...   .......|+|++..++
T Consensus       317 d~~~g~~~-~lt~~--~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~---~~~~~p~~SpDG~~i~  389 (429)
T PRK03629        317 NINGGAPQ-RITWE--GSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTDT---FLDETPSIAPNGTMVI  389 (429)
T ss_pred             ECCCCCeE-EeecC--CCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeCCC---CCCCCceECCCCCEEE
Confidence            66665443 33322  3345678899999998876543   35889999877543 33221   1234577999999998


Q ss_pred             EeeCCCC--eEEEEEcCCcceeEEeecCCCCCcEEEEeCC
Q 040370          170 SIDEPSN--EIVIWDALTAEKVAKWSSNHIGAPRWIEHSP  207 (228)
Q Consensus       170 ~~~~~d~--~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~  207 (228)
                      .++...+  .+.++++ ++.....+ ..|.+.+...+|+|
T Consensus       390 ~~s~~~~~~~l~~~~~-~G~~~~~l-~~~~~~~~~p~Wsp  427 (429)
T PRK03629        390 YSSSQGMGSVLNLVST-DGRFKARL-PATDGQVKFPAWSP  427 (429)
T ss_pred             EEEcCCCceEEEEEEC-CCCCeEEC-ccCCCCcCCcccCC
Confidence            8776322  3667776 45555555 46788888899987

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.66  E-value=3.4e-16  Score=105.92  Aligned_cols=135  Identities=21%  Similarity=0.292  Sum_probs=107.7

Q ss_pred             CCcCCcccc--------ceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeecc-ceeeeccceeeE
Q 040370            1 FFDFSKATA--------KRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANV-PEISVNGAINQV   71 (228)
Q Consensus         1 iwd~~~~~~--------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~-~~~~~~~~i~~~   71 (228)
                      +||++....        +-......|..+|.++.|.+..+.=++|+.+..+..|+++.......... .... +..|..+
T Consensus       179 ~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lk-npGv~gv  257 (323)
T KOG0322|consen  179 IWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLK-NPGVSGV  257 (323)
T ss_pred             EEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEEec-CCCccce
Confidence            477775421        23334457999999999998766777888888899999876422111111 1112 5578899


Q ss_pred             EeCCCCCeEEEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEc
Q 040370           72 RYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEV  138 (228)
Q Consensus        72 ~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~  138 (228)
                      ..-||++.+||++.|+.|+||+.++.+++..++.|  ...|++++|+|+.+.+++++.|++|.+|++
T Consensus       258 rIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyH--sagvn~vAfspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  258 RIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYH--SAGVNAVAFSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             EEccCCcEEeecccCCcEEEEEeccCCchhhhhhh--hcceeEEEeCCCCchhhhccCCceEEeeec
Confidence            99999999999999999999999999999999887  689999999999999999999999999986

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.65  E-value=1.5e-13  Score=105.39  Aligned_cols=173  Identities=12%  Similarity=0.054  Sum_probs=116.6

Q ss_pred             CeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEec---CCeEEEEeCCCCceeeEEecccccceeEEEEE
Q 040370           41 PIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASK---DGAIRLWDGVSANCVRSIVGAHGTAEATSANF  117 (228)
Q Consensus        41 ~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~  117 (228)
                      ..|.++|.+...... +..   + ...+.+..|+|+|+.|+..+.   +..|.+||+.+++... +...  ...+....|
T Consensus       182 ~~l~~~d~dg~~~~~-lt~---~-~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~-l~~~--~g~~~~~~~  253 (435)
T PRK05137        182 KRLAIMDQDGANVRY-LTD---G-SSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQREL-VGNF--PGMTFAPRF  253 (435)
T ss_pred             eEEEEECCCCCCcEE-Eec---C-CCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEE-eecC--CCcccCcEE
Confidence            378888876544322 211   1 567899999999998887753   4689999998876543 3322  445678899


Q ss_pred             CCCCCEEE-EeeCCCe--EEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCC--eEEEEEcCCcceeEEe
Q 040370          118 TKDQRFVL-SCGKDST--VKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSN--EIVIWDALTAEKVAKW  192 (228)
Q Consensus       118 ~~~~~~l~-~~~~d~~--i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~--~i~i~d~~~~~~~~~~  192 (228)
                      +|||+.|+ +.+.++.  |++||+.+++.. .+..  +........|+|+++.++.++..++  .|+++|+..++... +
T Consensus       254 SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~-~Lt~--~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~-l  329 (435)
T PRK05137        254 SPDGRKVVMSLSQGGNTDIYTMDLRSGTTT-RLTD--SPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRR-I  329 (435)
T ss_pred             CCCCCEEEEEEecCCCceEEEEECCCCceE-EccC--CCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEE-e
Confidence            99998775 5555554  888898876543 3332  3334566899999998887654333  68888876655433 3


Q ss_pred             ecCCCCCcEEEEeCCCCcEEEEecCC---CCEEEeee
Q 040370          193 SSNHIGAPRWIEHSPAEAAFITCGTD---RSVRFWKE  226 (228)
Q Consensus       193 ~~~~~~~v~~~~~~~~~~~l~s~~~d---g~i~vwd~  226 (228)
                       ..+.+.+....|+|+|+.|+..+.+   ..|.+||+
T Consensus       330 -t~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~  365 (435)
T PRK05137        330 -SFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKP  365 (435)
T ss_pred             -ecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEEC
Confidence             2234556678899999999876643   24666664

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.65  E-value=1e-14  Score=102.46  Aligned_cols=210  Identities=17%  Similarity=0.233  Sum_probs=142.0

Q ss_pred             ecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceE-----Eeeeccce--------eeeccceeeEEeCCCCC--eEE
Q 040370           17 QDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQC-----YLSANVPE--------ISVNGAINQVRYSSTGG--MYV   81 (228)
Q Consensus        17 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~-----~~~~~~~~--------~~~~~~i~~~~~~~~~~--~l~   81 (228)
                      ....-|.++.|...|++||+|..+|.|.++.-+....     ...++.+.        ......|..+.|.++++  .++
T Consensus        23 teadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FL  102 (433)
T KOG1354|consen   23 TEADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFL  102 (433)
T ss_pred             chhcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEE
Confidence            3456789999999999999999999999997543221     11111111        01145789999998654  677


Q ss_pred             EEecCCeEEEEeCCCCceee----------------------------------EEecccccceeEEEEECCCCCEEEEe
Q 040370           82 TASKDGAIRLWDGVSANCVR----------------------------------SIVGAHGTAEATSANFTKDQRFVLSC  127 (228)
Q Consensus        82 ~~~~dg~v~iwd~~~~~~~~----------------------------------~~~~~~~~~~i~~~~~~~~~~~l~~~  127 (228)
                      ....|.+|++|.++......                                  ....+.|..-|+++.++.|+..++++
T Consensus       103 lstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSA  182 (433)
T KOG1354|consen  103 LSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSA  182 (433)
T ss_pred             EecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeec
Confidence            78899999999875422111                                  11122346788999999999988887


Q ss_pred             eCCCeEEEEEccCCeeEEEE---ecce---eeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEE------e---
Q 040370          128 GKDSTVKLWEVSSGRLVKQY---LGAT---HTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAK------W---  192 (228)
Q Consensus       128 ~~d~~i~~wd~~~~~~~~~~---~~~~---~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~------~---  192 (228)
                       .|=.|.+|.++-......+   +.+.   -...+++..|+|..-.+++-++..|+|++-|+|.....-.      .   
T Consensus       183 -DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEeped  261 (433)
T KOG1354|consen  183 -DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPED  261 (433)
T ss_pred             -cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccC
Confidence             4778999998743332222   2111   2345677889998766665555579999999985432111      1   


Q ss_pred             ------ecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeeecC
Q 040370          193 ------SSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEIL  228 (228)
Q Consensus       193 ------~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~l  228 (228)
                            ..+-...|..+.|+++|+++++-+. -+|++||+.|
T Consensus       262 p~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nm  302 (433)
T KOG1354|consen  262 PSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNM  302 (433)
T ss_pred             CcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccc
Confidence                  1122346888999999999997643 6799999865

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.65  E-value=1.1e-13  Score=111.41  Aligned_cols=210  Identities=13%  Similarity=0.188  Sum_probs=147.1

Q ss_pred             ecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceE--E--eeeccceeeeccceee-EEeCC-CCC-eEEEEecCCeE
Q 040370           17 QDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQC--Y--LSANVPEISVNGAINQ-VRYSS-TGG-MYVTASKDGAI   89 (228)
Q Consensus        17 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~--~--~~~~~~~~~~~~~i~~-~~~~~-~~~-~l~~~~~dg~v   89 (228)
                      ....++.++...+.++.+|+++.||.|++.+++....  .  .....+..+..+.+.+ -+|.. .+. .++.+..-+.|
T Consensus      1096 ~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~i 1175 (1431)
T KOG1240|consen 1096 PEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRI 1175 (1431)
T ss_pred             ccCCceEEEEeccCCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccce
Confidence            3577899999999999999999999999999876221  1  1111111121333333 34443 233 67788888999


Q ss_pred             EEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECC---CCc
Q 040370           90 RLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFND---TEE  166 (228)
Q Consensus        90 ~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~  166 (228)
                      ..||+++......++.....+.|++++.+|.+++++.|+..|.+.+||+|-+.++.....+.+ ..+..+..+|   ...
T Consensus      1176 v~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~-~~i~~v~~~~~~~~~S 1254 (1431)
T KOG1240|consen 1176 VSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPAR-APIRHVWLCPTYPQES 1254 (1431)
T ss_pred             EEecchhhhhHHhhhcCccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCccc-CCcceEEeeccCCCCc
Confidence            999999887776666655578999999999999999999999999999998888887764432 4444444443   334


Q ss_pred             EEEEeeC-CCCeEEEEEcCCcceeEEeecC------------------CCCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370          167 FVLSIDE-PSNEIVIWDALTAEKVAKWSSN------------------HIGAPRWIEHSPAEAAFITCGTDRSVRFWKEI  227 (228)
Q Consensus       167 ~~~~~~~-~d~~i~i~d~~~~~~~~~~~~~------------------~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~  227 (228)
                      ..++++. ..+.+.+|++.+|.....+...                  +.-......+...+..+.+|+.|..|+.||..
T Consensus      1255 ~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~ 1334 (1431)
T KOG1240|consen 1255 VSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPT 1334 (1431)
T ss_pred             eEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCC
Confidence            5555555 5789999999998665554221                  11112223343455689999999999999963

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.64  E-value=8.6e-12  Score=92.81  Aligned_cols=207  Identities=15%  Similarity=0.188  Sum_probs=137.6

Q ss_pred             cCcceEEEEEeCCCCEEEEec-CCCeEEEEEccc-ceEEeeeccc--ee-------eeccceeeEEeCCCCCeEEEEe-c
Q 040370           18 DTHNVRSVSFHPSGDFLLAGT-DHPIAHLYDVNT-FQCYLSANVP--EI-------SVNGAINQVRYSSTGGMYVTAS-K   85 (228)
Q Consensus        18 ~~~~v~~~~~~~~~~~l~~~~-~d~~i~vw~~~~-~~~~~~~~~~--~~-------~~~~~i~~~~~~~~~~~l~~~~-~   85 (228)
                      .......++++|++++|+++. .+|.|.++++.. +.........  .+       ......+++.|+|+++++++.. .
T Consensus        85 ~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG  164 (345)
T PF10282_consen   85 GGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLG  164 (345)
T ss_dssp             SSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETT
T ss_pred             CCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecC
Confidence            445667899999999998876 489999999987 4433221111  00       0034578999999999888764 3


Q ss_pred             CCeEEEEeCCCCc--e--eeEEecccccceeEEEEECCCCCEEEEee-CCCeEEEEEcc--CCee--EEEEecc----ee
Q 040370           86 DGAIRLWDGVSAN--C--VRSIVGAHGTAEATSANFTKDQRFVLSCG-KDSTVKLWEVS--SGRL--VKQYLGA----TH  152 (228)
Q Consensus        86 dg~v~iwd~~~~~--~--~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~i~~wd~~--~~~~--~~~~~~~----~~  152 (228)
                      ...|.+|++....  .  ...+.... ......+.|+|++++++... .+++|.++++.  ++..  +......    ..
T Consensus       165 ~D~v~~~~~~~~~~~l~~~~~~~~~~-G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~  243 (345)
T PF10282_consen  165 ADRVYVYDIDDDTGKLTPVDSIKVPP-GSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTG  243 (345)
T ss_dssp             TTEEEEEEE-TTS-TEEEEEEEECST-TSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCS
T ss_pred             CCEEEEEEEeCCCceEEEeecccccc-CCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccc
Confidence            4579999987654  2  22333332 55678999999999876554 57789999998  4432  2222211    11


Q ss_pred             eeeeeEEEECCCCcEEEEeeCCCCeEEEEEcC--Ccce--eEEeecCCCCCcEEEEeCCCCcEEEEec-CCCCEEEeee
Q 040370          153 TQLRFQAVFNDTEEFVLSIDEPSNEIVIWDAL--TAEK--VAKWSSNHIGAPRWIEHSPAEAAFITCG-TDRSVRFWKE  226 (228)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~--~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~s~~-~dg~i~vwd~  226 (228)
                      ......+.++|++++++++....+.|.+|++.  ++..  +..+ .......+.++++|+|++|+++. .++.|.+|++
T Consensus       244 ~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~-~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~  321 (345)
T PF10282_consen  244 ENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTV-PTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDI  321 (345)
T ss_dssp             SSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEE-EESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEE
T ss_pred             cCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEE-eCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEE
Confidence            12567888999999999998888999999983  2332  2222 22234579999999999988776 5678999876

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.64  E-value=5.1e-13  Score=101.75  Aligned_cols=200  Identities=9%  Similarity=0.054  Sum_probs=122.2

Q ss_pred             ecCcceEEEEEeCCCCEE---EEecCC--CeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEec-----C
Q 040370           17 QDTHNVRSVSFHPSGDFL---LAGTDH--PIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASK-----D   86 (228)
Q Consensus        17 ~~~~~v~~~~~~~~~~~l---~~~~~d--~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-----d   86 (228)
                      .....+..-+|+|||+.+   ++...+  ..|.+.++..++.......     .+.....+|+|||+.|+..+.     +
T Consensus       182 ~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~-----~g~~~~p~wSPDG~~Laf~s~~~g~~d  256 (428)
T PRK01029        182 QEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILAL-----QGNQLMPTFSPRKKLLAFISDRYGNPD  256 (428)
T ss_pred             cCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecC-----CCCccceEECCCCCEEEEEECCCCCcc
Confidence            345567788999998753   244333  4677888887764433322     334456899999998876543     2


Q ss_pred             CeEEEEeCCCC--ceeeEEecccccceeEEEEECCCCCEEEEee-CCCeEEEE--EccC-CeeEEEEecceeeeeeeEEE
Q 040370           87 GAIRLWDGVSA--NCVRSIVGAHGTAEATSANFTKDQRFVLSCG-KDSTVKLW--EVSS-GRLVKQYLGATHTQLRFQAV  160 (228)
Q Consensus        87 g~v~iwd~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~i~~w--d~~~-~~~~~~~~~~~~~~~~~~~~  160 (228)
                      ..+..|++..+  .....+.... ........|+|||+.|+..+ .+|...+|  ++.. +.....+..  .........
T Consensus       257 i~~~~~~~~~g~~g~~~~lt~~~-~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~--~~~~~~~p~  333 (428)
T PRK01029        257 LFIQSFSLETGAIGKPRRLLNEA-FGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTK--KYRNSSCPA  333 (428)
T ss_pred             eeEEEeecccCCCCcceEeecCC-CCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEecc--CCCCcccee
Confidence            34455777653  1222232211 22345679999999877665 45654444  4432 222333322  223446788


Q ss_pred             ECCCCcEEEEeeCCC--CeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEec-CC--CCEEEeee
Q 040370          161 FNDTEEFVLSIDEPS--NEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCG-TD--RSVRFWKE  226 (228)
Q Consensus       161 ~~~~~~~~~~~~~~d--~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~-~d--g~i~vwd~  226 (228)
                      |+|+++.++.+...+  ..|.+||+.+++.....  .....+....|+|||+.|+..+ .+  ..|.++|+
T Consensus       334 wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt--~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl  402 (428)
T PRK01029        334 WSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLT--TSPENKESPSWAIDSLHLVYSAGNSNESELYLISL  402 (428)
T ss_pred             ECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEcc--CCCCCccceEECCCCCEEEEEECCCCCceEEEEEC
Confidence            999999988765533  47999999888764433  2234567899999999877443 33  34666654

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.64  E-value=9e-14  Score=106.17  Aligned_cols=173  Identities=9%  Similarity=0.037  Sum_probs=109.8

Q ss_pred             CeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecC---CeEEEEeCCCCceeeEEecccccceeEEEEE
Q 040370           41 PIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKD---GAIRLWDGVSANCVRSIVGAHGTAEATSANF  117 (228)
Q Consensus        41 ~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~  117 (228)
                      ..|.++|...... .....   + ...+.+.+|+|+|+.|+..+.+   ..|.+||+.+++..... ..  ........|
T Consensus       176 ~~L~~~D~dG~~~-~~l~~---~-~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~-~~--~g~~~~~~~  247 (427)
T PRK02889        176 YQLQISDADGQNA-QSALS---S-PEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVA-NF--KGSNSAPAW  247 (427)
T ss_pred             cEEEEECCCCCCc-eEecc---C-CCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEee-cC--CCCccceEE
Confidence            4566777643322 22211   1 5678899999999988877643   45999999888754332 22  334568899


Q ss_pred             CCCCCEEE-EeeCCCeEEEEE--ccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEc--CCcceeEEe
Q 040370          118 TKDQRFVL-SCGKDSTVKLWE--VSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDA--LTAEKVAKW  192 (228)
Q Consensus       118 ~~~~~~l~-~~~~d~~i~~wd--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~--~~~~~~~~~  192 (228)
                      +||++.|+ +.+.++...+|.  +..+. ...+..  +........|+|+++.++.++..++...+|.+  .+++.....
T Consensus       248 SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~--~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt  324 (427)
T PRK02889        248 SPDGRTLAVALSRDGNSQIYTVNADGSG-LRRLTQ--SSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVT  324 (427)
T ss_pred             CCCCCEEEEEEccCCCceEEEEECCCCC-cEECCC--CCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEe
Confidence            99998876 566777756555  44433 333332  23344567899999988876654566666654  444432222


Q ss_pred             ecCCCCCcEEEEeCCCCcEEEEecCCC---CEEEeee
Q 040370          193 SSNHIGAPRWIEHSPAEAAFITCGTDR---SVRFWKE  226 (228)
Q Consensus       193 ~~~~~~~v~~~~~~~~~~~l~s~~~dg---~i~vwd~  226 (228)
                        ..........|+|+|++|+..+.++   .|.+||+
T Consensus       325 --~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~  359 (427)
T PRK02889        325 --FTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDL  359 (427)
T ss_pred             --cCCCCcCceEECCCCCEEEEEEccCCcEEEEEEEC
Confidence              1223344678999999998776554   5888885

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.64  E-value=9.7e-14  Score=106.26  Aligned_cols=173  Identities=12%  Similarity=0.051  Sum_probs=114.9

Q ss_pred             CeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecC---CeEEEEeCCCCceeeEEecccccceeEEEEE
Q 040370           41 PIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKD---GAIRLWDGVSANCVRSIVGAHGTAEATSANF  117 (228)
Q Consensus        41 ~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~  117 (228)
                      ..|.+||........ +..   + ...+.+.+|+|+|+.|+..+.+   ..|.+||+.+++..... ..  .....+..|
T Consensus       184 ~~l~i~D~~g~~~~~-lt~---~-~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~-~~--~g~~~~~~~  255 (433)
T PRK04922        184 YALQVADSDGYNPQT-ILR---S-AEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVA-SF--RGINGAPSF  255 (433)
T ss_pred             EEEEEECCCCCCceE-eec---C-CCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEec-cC--CCCccCceE
Confidence            368888886543322 211   1 5578899999999988887643   46999999877654332 22  334457899


Q ss_pred             CCCCCEEE-EeeCCC--eEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCCe--EEEEEcCCcceeEEe
Q 040370          118 TKDQRFVL-SCGKDS--TVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNE--IVIWDALTAEKVAKW  192 (228)
Q Consensus       118 ~~~~~~l~-~~~~d~--~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~--i~i~d~~~~~~~~~~  192 (228)
                      +|+|+.++ +.+.++  .|++||+.+++... +..  +........|+|+++.++.++..++.  |+++|+.+++.....
T Consensus       256 SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~-lt~--~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt  332 (433)
T PRK04922        256 SPDGRRLALTLSRDGNPEIYVMDLGSRQLTR-LTN--HFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLT  332 (433)
T ss_pred             CCCCCEEEEEEeCCCCceEEEEECCCCCeEE-Ccc--CCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEee
Confidence            99998775 445555  59999998876433 322  22334567899999988877654454  666677666543322


Q ss_pred             ecCCCCCcEEEEeCCCCcEEEEecCCC---CEEEeee
Q 040370          193 SSNHIGAPRWIEHSPAEAAFITCGTDR---SVRFWKE  226 (228)
Q Consensus       193 ~~~~~~~v~~~~~~~~~~~l~s~~~dg---~i~vwd~  226 (228)
                        .+.......+|+|+|++|+..+.++   .|.+||+
T Consensus       333 --~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~  367 (433)
T PRK04922        333 --FQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDL  367 (433)
T ss_pred             --cCCCCccCEEECCCCCEEEEEECCCCceeEEEEEC
Confidence              2233445689999999988765433   5888885

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.60  E-value=2.3e-13  Score=93.69  Aligned_cols=185  Identities=15%  Similarity=0.139  Sum_probs=129.8

Q ss_pred             CcceEEEEEeC---CCC-EEEEecCCCeEEEEEcccceEEeeeccceeee--ccceeeEEeCCCCCeEEEEecCCeEEEE
Q 040370           19 THNVRSVSFHP---SGD-FLLAGTDHPIAHLYDVNTFQCYLSANVPEISV--NGAINQVRYSSTGGMYVTASKDGAIRLW   92 (228)
Q Consensus        19 ~~~v~~~~~~~---~~~-~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~dg~v~iw   92 (228)
                      ...+..+.|..   ++. .++-+-..|.|.++.....+....+.......  .....++.|++.+..++++..+|.+.+-
T Consensus        69 ts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v  148 (339)
T KOG0280|consen   69 TSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGV  148 (339)
T ss_pred             ccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEE
Confidence            45677777764   455 55667778999999876554433333322110  1124577899999999999999999966


Q ss_pred             eCCCCcee--eEEecccccceeEEEEECC-CCCEEEEeeCCCeEEEEEccCCe-eEEEEecceeeeeeeEEEECCCCcEE
Q 040370           93 DGVSANCV--RSIVGAHGTAEATSANFTK-DQRFVLSCGKDSTVKLWEVSSGR-LVKQYLGATHTQLRFQAVFNDTEEFV  168 (228)
Q Consensus        93 d~~~~~~~--~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (228)
                      +.......  +.++.|  ..++.-..|+. +.+.+++|+.|+.+..||+|..+ .+.. ....|...+.++..+|..+..
T Consensus       149 ~~t~~~le~vq~wk~H--e~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~-n~kvH~~GV~SI~ss~~~~~~  225 (339)
T KOG0280|consen  149 YETEMVLEKVQTWKVH--EFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWH-NSKVHTSGVVSIYSSPPKPTY  225 (339)
T ss_pred             ecceeeeeeccccccc--ceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeee-cceeeecceEEEecCCCCCce
Confidence            65544433  356665  77888888887 55789999999999999999443 2222 123367778888888877777


Q ss_pred             EEeeCCCCeEEEEEcCC-cceeEEeecCCCCCcEEEEeCCC
Q 040370          169 LSIDEPSNEIVIWDALT-AEKVAKWSSNHIGAPRWIEHSPA  208 (228)
Q Consensus       169 ~~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~~v~~~~~~~~  208 (228)
                      +++|+.|-.|++||.|+ ++++...  .-.+.|..+.++|.
T Consensus       226 I~TGsYDe~i~~~DtRnm~kPl~~~--~v~GGVWRi~~~p~  264 (339)
T KOG0280|consen  226 IATGSYDECIRVLDTRNMGKPLFKA--KVGGGVWRIKHHPE  264 (339)
T ss_pred             EEEeccccceeeeehhcccCccccC--ccccceEEEEecch
Confidence            77777799999999995 5555543  44588999999983

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.59  E-value=1.4e-12  Score=89.96  Aligned_cols=186  Identities=16%  Similarity=0.155  Sum_probs=132.3

Q ss_pred             CCCeEEEEEcccceEEeeeccceeeeccceeeEEeCC---CCC-eEEEEecCCeEEEEeCCCCceeeEEeccc----ccc
Q 040370           39 DHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSS---TGG-MYVTASKDGAIRLWDGVSANCVRSIVGAH----GTA  110 (228)
Q Consensus        39 ~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~----~~~  110 (228)
                      ..|.+.+|++...+........... .+.+..+.|..   +|. .++-+..+|.|.++..........+..-.    ...
T Consensus        44 R~Gkl~Lys~~d~~~~~l~~~q~~d-ts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~  122 (339)
T KOG0280|consen   44 RSGKLHLYSLEDMKLSPLDTLQCTD-TSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVV  122 (339)
T ss_pred             eccceEEEeecccccCccceeeeec-ccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhhe
Confidence            3467889998876654411111122 55677777764   344 56667788999999866544333332211    012


Q ss_pred             eeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEE--EEecceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcC-Ccc
Q 040370          111 EATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVK--QYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDAL-TAE  187 (228)
Q Consensus       111 ~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~-~~~  187 (228)
                      ...++.|++.+..++++..+|.+.+-+...+....  ..+.  |.-....+.|+...+.++.+|++|+.+..||+| .++
T Consensus       123 ~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~--He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~  200 (339)
T KOG0280|consen  123 EALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKV--HEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKT  200 (339)
T ss_pred             eeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccc--cceeeeeeecccCCCceEEecCCCceEEEEEecCCcc
Confidence            35678899999999999999999976665554443  4554  666777788888888888889999999999999 344


Q ss_pred             eeEEeecCCCCCcEEEEeCC-CCcEEEEecCCCCEEEeeec
Q 040370          188 KVAKWSSNHIGAPRWIEHSP-AEAAFITCGTDRSVRFWKEI  227 (228)
Q Consensus       188 ~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~vwd~~  227 (228)
                      .+..-..-|...|.+|.-+| .+.+++||+.|..|++||.+
T Consensus       201 ~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtR  241 (339)
T KOG0280|consen  201 FIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTR  241 (339)
T ss_pred             eeeecceeeecceEEEecCCCCCceEEEeccccceeeeehh
Confidence            44443457889999999887 67899999999999999987

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.59  E-value=1.3e-12  Score=99.99  Aligned_cols=173  Identities=12%  Similarity=0.060  Sum_probs=115.0

Q ss_pred             CeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecC---CeEEEEeCCCCceeeEEecccccceeEEEEE
Q 040370           41 PIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKD---GAIRLWDGVSANCVRSIVGAHGTAEATSANF  117 (228)
Q Consensus        41 ~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~  117 (228)
                      ..|.++|...........    + ...+...+|+|+|++++.+..+   ..|++||+.+++...... .  .....++.|
T Consensus       170 ~~l~~~d~~g~~~~~l~~----~-~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~-~--~~~~~~~~~  241 (417)
T TIGR02800       170 YELQVADYDGANPQTITR----S-REPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVAS-F--PGMNGAPAF  241 (417)
T ss_pred             ceEEEEcCCCCCCEEeec----C-CCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeec-C--CCCccceEE
Confidence            357777775443322211    1 4467888999999998877644   479999998876543332 2  345567899


Q ss_pred             CCCCCEEEE-eeCCC--eEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCC--eEEEEEcCCcceeEEe
Q 040370          118 TKDQRFVLS-CGKDS--TVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSN--EIVIWDALTAEKVAKW  192 (228)
Q Consensus       118 ~~~~~~l~~-~~~d~--~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~--~i~i~d~~~~~~~~~~  192 (228)
                      +|+++.|+. .+.++  .|++||+.+++... +..  +........|+|+++.++.++..++  .|+++|+.+++... +
T Consensus       242 spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~-l~~--~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~-l  317 (417)
T TIGR02800       242 SPDGSKLAVSLSKDGNPDIYVMDLDGKQLTR-LTN--GPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRR-L  317 (417)
T ss_pred             CCCCCEEEEEECCCCCccEEEEECCCCCEEE-CCC--CCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-e
Confidence            999987764 44444  58899988765433 222  2223345678999998877654333  68888887765433 2


Q ss_pred             ecCCCCCcEEEEeCCCCcEEEEecCCC---CEEEeee
Q 040370          193 SSNHIGAPRWIEHSPAEAAFITCGTDR---SVRFWKE  226 (228)
Q Consensus       193 ~~~~~~~v~~~~~~~~~~~l~s~~~dg---~i~vwd~  226 (228)
                       ..+........|+|++++++.++.++   .|.+||+
T Consensus       318 -~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~  353 (417)
T TIGR02800       318 -TFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDL  353 (417)
T ss_pred             -ecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeC
Confidence             23445677889999999998887765   6777764

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.58  E-value=8.1e-13  Score=92.65  Aligned_cols=203  Identities=14%  Similarity=0.244  Sum_probs=135.8

Q ss_pred             EEeecCcceEEEEEeCCCCEEE-EecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecC------
Q 040370           14 RVIQDTHNVRSVSFHPSGDFLL-AGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKD------   86 (228)
Q Consensus        14 ~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d------   86 (228)
                      ++.....++.+++|+|+|+.++ +..-+-.|.||.+.+.+.......     +..+..++|+|+|++.+.++.-      
T Consensus        86 kIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~p-----K~~~kg~~f~~dg~f~ai~sRrDCkdyv  160 (447)
T KOG4497|consen   86 KIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHP-----KTNVKGYAFHPDGQFCAILSRRDCKDYV  160 (447)
T ss_pred             EeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEeccc-----ccCceeEEECCCCceeeeeecccHHHHH
Confidence            3445678999999999996655 566688999999998765443222     4556888999999877665431      


Q ss_pred             ------------------------------CeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEE
Q 040370           87 ------------------------------GAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLW  136 (228)
Q Consensus        87 ------------------------------g~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~w  136 (228)
                                                    ..+.+||---.-.+.   ..+.+-.+..+.|+|.+++|+.|+.|+.+|+.
T Consensus       161 ~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~---aYe~~lG~k~v~wsP~~qflavGsyD~~lrvl  237 (447)
T KOG4497|consen  161 QISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVY---AYERGLGLKFVEWSPCNQFLAVGSYDQMLRVL  237 (447)
T ss_pred             HHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheee---eeeeccceeEEEeccccceEEeeccchhhhhh
Confidence                                          223334321111111   11224568889999999999999999998875


Q ss_pred             EccCCee------------------------------------------------------------EEEEec----cee
Q 040370          137 EVSSGRL------------------------------------------------------------VKQYLG----ATH  152 (228)
Q Consensus       137 d~~~~~~------------------------------------------------------------~~~~~~----~~~  152 (228)
                      +--+-+.                                                            +..++.    +..
T Consensus       238 nh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnP  317 (447)
T KOG4497|consen  238 NHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNP  317 (447)
T ss_pred             ceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCc
Confidence            3211110                                                            000000    001


Q ss_pred             eeeeeEEEECCCCcEEEEeeCC-CCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeee
Q 040370          153 TQLRFQAVFNDTEEFVLSIDEP-SNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKE  226 (228)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~  226 (228)
                      ...+..++|+++..|+++-... -+.+-+||+++.+....+  ....+|....|+|....|+.+....++.+|-+
T Consensus       318 k~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avL--iQk~piraf~WdP~~prL~vctg~srLY~W~p  390 (447)
T KOG4497|consen  318 KCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVL--IQKHPIRAFEWDPGRPRLVVCTGKSRLYFWAP  390 (447)
T ss_pred             ccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhh--hhccceeEEEeCCCCceEEEEcCCceEEEEcC
Confidence            2334568899999998875442 367999999988776665  34568999999998888888777777888864

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.58  E-value=5.3e-12  Score=94.08  Aligned_cols=197  Identities=16%  Similarity=0.257  Sum_probs=136.1

Q ss_pred             cCcceEEEEEeCCC--CEEEE-----ecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCC-eEEEE--ecC-
Q 040370           18 DTHNVRSVSFHPSG--DFLLA-----GTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGG-MYVTA--SKD-   86 (228)
Q Consensus        18 ~~~~v~~~~~~~~~--~~l~~-----~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~--~~d-   86 (228)
                      |...|+.+.++|.+  ..+|+     .+.-+.|+||................- ...=..+.|++-|+ +|+.+  .-| 
T Consensus       164 ~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFF-kadkvqm~WN~~gt~LLvLastdVDk  242 (566)
T KOG2315|consen  164 SVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFF-KADKVQMKWNKLGTALLVLASTDVDK  242 (566)
T ss_pred             eccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhcccc-ccceeEEEeccCCceEEEEEEEeecC
Confidence            57889999999863  34443     456678999988733221111111111 23334578888766 22222  222 


Q ss_pred             --------CeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEe--eCCCeEEEEEccCCeeEEEEecceeeeee
Q 040370           87 --------GAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSC--GKDSTVKLWEVSSGRLVKQYLGATHTQLR  156 (228)
Q Consensus        87 --------g~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~~d~~i~~wd~~~~~~~~~~~~~~~~~~~  156 (228)
                              .++++.+++.......+..   .++|.++.|+|+++.++++  -.-..+.++|++ +.++..+    ...+.
T Consensus       243 tn~SYYGEq~Lyll~t~g~s~~V~L~k---~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df----~egpR  314 (566)
T KOG2315|consen  243 TNASYYGEQTLYLLATQGESVSVPLLK---EGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDF----PEGPR  314 (566)
T ss_pred             CCccccccceEEEEEecCceEEEecCC---CCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeC----CCCCc
Confidence                    4688888874444444433   7899999999999876654  455689999986 5666666    45567


Q ss_pred             eEEEECCCCcEEEEeeCC--CCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecC------CCCEEEeee
Q 040370          157 FQAVFNDTEEFVLSIDEP--SNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGT------DRSVRFWKE  226 (228)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~------dg~i~vwd~  226 (228)
                      ..+.|+|.|++++.+|-.  -|.+.+||+.+.+.+..+.   ...-+-+.|+|||.+++|+..      |+.++||+.
T Consensus       315 N~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~---a~~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhy  389 (566)
T KOG2315|consen  315 NTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFK---AANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHY  389 (566)
T ss_pred             cceEECCCCCEEEEeecCCCCCceEEEeccchhhccccc---cCCceEEEEcCCCcEEEEEeccccEEecCCeEEEEe
Confidence            789999999999988763  3899999999987777762   233456889999999999874      788999985

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.56  E-value=7.4e-11  Score=87.84  Aligned_cols=207  Identities=15%  Similarity=0.197  Sum_probs=137.9

Q ss_pred             ecCcceEEEEEeCCCCEEEEecC----CCeEEEEEcccc--eEEeeeccceeeeccceeeEEeCCCCCeEEEEe-cCCeE
Q 040370           17 QDTHNVRSVSFHPSGDFLLAGTD----HPIAHLYDVNTF--QCYLSANVPEISVNGAINQVRYSSTGGMYVTAS-KDGAI   89 (228)
Q Consensus        17 ~~~~~v~~~~~~~~~~~l~~~~~----d~~i~vw~~~~~--~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~v   89 (228)
                      ........++++|++++|++...    ++.|..|++...  +....-.... . ......++++|++++++++. .+|.|
T Consensus        34 ~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~-~-g~~p~~i~~~~~g~~l~vany~~g~v  111 (345)
T PF10282_consen   34 AEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPS-G-GSSPCHIAVDPDGRFLYVANYGGGSV  111 (345)
T ss_dssp             EESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEE-S-SSCEEEEEECTTSSEEEEEETTTTEE
T ss_pred             cCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeecc-C-CCCcEEEEEecCCCEEEEEEccCCeE
Confidence            34566778999999999998766    579999998864  3322222211 1 44556799999999888886 58999


Q ss_pred             EEEeCCC-CceeeEE--ec---------ccccceeEEEEECCCCCEEEEeeC-CCeEEEEEccCCe--eE--EEEeccee
Q 040370           90 RLWDGVS-ANCVRSI--VG---------AHGTAEATSANFTKDQRFVLSCGK-DSTVKLWEVSSGR--LV--KQYLGATH  152 (228)
Q Consensus        90 ~iwd~~~-~~~~~~~--~~---------~~~~~~i~~~~~~~~~~~l~~~~~-d~~i~~wd~~~~~--~~--~~~~~~~~  152 (228)
                      .++++.. +......  ..         ........++.++|+++++++... ...|.+|++....  ..  ..+.. ..
T Consensus       112 ~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~-~~  190 (345)
T PF10282_consen  112 SVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKV-PP  190 (345)
T ss_dssp             EEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEEC-ST
T ss_pred             EEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeecccc-cc
Confidence            9999987 3332221  11         012345788999999998887653 3479999997654  21  22222 13


Q ss_pred             eeeeeEEEECCCCcEEEEeeCCCCeEEEEEcC--Ccce--eEEee---cCC--CCCcEEEEeCCCCcEEEEec-CCCCEE
Q 040370          153 TQLRFQAVFNDTEEFVLSIDEPSNEIVIWDAL--TAEK--VAKWS---SNH--IGAPRWIEHSPAEAAFITCG-TDRSVR  222 (228)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~--~~~~--~~~~~---~~~--~~~v~~~~~~~~~~~l~s~~-~dg~i~  222 (228)
                      ......+.|+|+++++++....++.|.++++.  ++..  .....   ...  ......|+++|+|++|+++. .++.|.
T Consensus       191 G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~  270 (345)
T PF10282_consen  191 GSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSIS  270 (345)
T ss_dssp             TSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEE
T ss_pred             CCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEE
Confidence            44456789999999999999989999999988  3322  22221   111  12578899999999887765 567799


Q ss_pred             Eeee
Q 040370          223 FWKE  226 (228)
Q Consensus       223 vwd~  226 (228)
                      +|++
T Consensus       271 vf~~  274 (345)
T PF10282_consen  271 VFDL  274 (345)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9887

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.53  E-value=9.8e-14  Score=115.32  Aligned_cols=190  Identities=15%  Similarity=0.317  Sum_probs=148.3

Q ss_pred             ecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCC
Q 040370           17 QDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVS   96 (228)
Q Consensus        17 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~   96 (228)
                      .+-..|.++.=+|...+.++|+.||.+++|....++.+...+...   ...|+.+.|+.+|+.+..+..||.+.+|... 
T Consensus      2206 ~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g---~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~- 2281 (2439)
T KOG1064|consen 2206 HPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAG---NSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS- 2281 (2439)
T ss_pred             cccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccC---cchhhhhhhcccCCceeeeccCCceeecccC-
Confidence            355788999999999999999999999999999988777666543   5789999999999999999999999999986 


Q ss_pred             CceeeEEecccccceeEEEEECCCCCEEEEee---CCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeC
Q 040370           97 ANCVRSIVGAHGTAEATSANFTKDQRFVLSCG---KDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDE  173 (228)
Q Consensus        97 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~---~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (228)
                      .++....+.|  ......+.|-.  ..+++++   .++.+.+||..-.....-+ ...|....+++++.|....++++|.
T Consensus      2282 pk~~~s~qch--nk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v-~~~H~~gaT~l~~~P~~qllisggr 2356 (2439)
T KOG1064|consen 2282 PKPYTSWQCH--NKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLV-HTCHDGGATVLAYAPKHQLLISGGR 2356 (2439)
T ss_pred             CcceeccccC--Cccccceeeee--hhhhccccCCCCCcccchhcccCccccee-eeecCCCceEEEEcCcceEEEecCC
Confidence            4555555554  55666777764  5566654   5678999997532221111 1337788899999999888888655


Q ss_pred             CCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370          174 PSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEI  227 (228)
Q Consensus       174 ~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~  227 (228)
                       +|.|++||++..+..+.+..          ++ ...++++|+..|.++||++.
T Consensus      2357 -~G~v~l~D~rqrql~h~~~~----------~~-~~~~f~~~ss~g~ikIw~~s 2398 (2439)
T KOG1064|consen 2357 -KGEVCLFDIRQRQLRHTFQA----------LD-TREYFVTGSSEGNIKIWRLS 2398 (2439)
T ss_pred             -cCcEEEeehHHHHHHHHhhh----------hh-hhheeeccCcccceEEEEcc
Confidence             79999999998888777732          44 56789999999999999963

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.53  E-value=2.5e-10  Score=83.71  Aligned_cols=197  Identities=13%  Similarity=0.129  Sum_probs=134.2

Q ss_pred             EeCCCCEEEEecC----------CCeEEEEEcccceEEeeeccceeee---ccceeeEEeCCCCCeEEEEe-c-CCeEEE
Q 040370           27 FHPSGDFLLAGTD----------HPIAHLYDVNTFQCYLSANVPEISV---NGAINQVRYSSTGGMYVTAS-K-DGAIRL   91 (228)
Q Consensus        27 ~~~~~~~l~~~~~----------d~~i~vw~~~~~~~~~~~~~~~~~~---~~~i~~~~~~~~~~~l~~~~-~-dg~v~i   91 (228)
                      ++||++.|+++..          +..|.+||..+.+.+..+..+....   ......++++|+|++++... . +..|.+
T Consensus        53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~V  132 (352)
T TIGR02658        53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGV  132 (352)
T ss_pred             ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEE
Confidence            9999998886654          7899999999999887776543210   22345789999999988776 3 689999


Q ss_pred             EeCCCCceeeEEecccc-----------------------------cceeEEEE--------------ECC-CCCEEEEe
Q 040370           92 WDGVSANCVRSIVGAHG-----------------------------TAEATSAN--------------FTK-DQRFVLSC  127 (228)
Q Consensus        92 wd~~~~~~~~~~~~~~~-----------------------------~~~i~~~~--------------~~~-~~~~l~~~  127 (228)
                      .|+.+++.+.++.....                             ........              |.+ ++++++..
T Consensus       133 vD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs  212 (352)
T TIGR02658       133 VDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPT  212 (352)
T ss_pred             EECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEe
Confidence            99998877665532110                             00111111              123 66666666


Q ss_pred             eCCCeEEEEEccCCe-----eEEEEecc-----eeeeeeeEEEECCCCcEEEEee-C--------CCCeEEEEEcCCcce
Q 040370          128 GKDSTVKLWEVSSGR-----LVKQYLGA-----THTQLRFQAVFNDTEEFVLSID-E--------PSNEIVIWDALTAEK  188 (228)
Q Consensus       128 ~~d~~i~~wd~~~~~-----~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~-~--------~d~~i~i~d~~~~~~  188 (228)
                      .. |+|.+.|+....     ....+...     -.+.....++++++++.+++.. .        ..+.|.++|..+++.
T Consensus       213 ~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kv  291 (352)
T TIGR02658       213 YT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKR  291 (352)
T ss_pred             cC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeE
Confidence            55 999999964422     22222110     0122223488999998888743 1        125899999999999


Q ss_pred             eEEeecCCCCCcEEEEeCCCCc-EEEEec-CCCCEEEeee
Q 040370          189 VAKWSSNHIGAPRWIEHSPAEA-AFITCG-TDRSVRFWKE  226 (228)
Q Consensus       189 ~~~~~~~~~~~v~~~~~~~~~~-~l~s~~-~dg~i~vwd~  226 (228)
                      +..+..+  ..+..++++||++ +|++.. .++.|.+.|.
T Consensus       292 i~~i~vG--~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~  329 (352)
T TIGR02658       292 LRKIELG--HEIDSINVSQDAKPLLYALSTGDKTLYIFDA  329 (352)
T ss_pred             EEEEeCC--CceeeEEECCCCCeEEEEeCCCCCcEEEEEC
Confidence            9988544  4789999999999 777666 6788999986

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.52  E-value=8.4e-12  Score=93.46  Aligned_cols=146  Identities=16%  Similarity=0.208  Sum_probs=124.2

Q ss_pred             CEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCCCceeeEEecccccce
Q 040370           32 DFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAE  111 (228)
Q Consensus        32 ~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~  111 (228)
                      ..++-|...|.|.+|+...++....+..  ..|.+.|+++.++.+-..|.+++.|+.+..|+....+.+..+...  ...
T Consensus        71 ~~lvlgt~~g~v~~ys~~~g~it~~~st--~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~--~~~  146 (541)
T KOG4547|consen   71 SMLVLGTPQGSVLLYSVAGGEITAKLST--DKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQ--KPL  146 (541)
T ss_pred             eEEEeecCCccEEEEEecCCeEEEEEec--CCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccC--CCc
Confidence            4677788899999999999987665542  344889999999998889999999999999999999999888876  668


Q ss_pred             eEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCC-----CcEEEEeeCCCCeEEEEEcCC
Q 040370          112 ATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDT-----EEFVLSIDEPSNEIVIWDALT  185 (228)
Q Consensus       112 i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~d~~i~i~d~~~  185 (228)
                      +.+++.+||+..+++++  +.|++||+++.+.+..|.+  |...+..+.|...     |.+++++...+..+.+|-...
T Consensus       147 ~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftg--h~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~  221 (541)
T KOG4547|consen  147 VSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFTG--HGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK  221 (541)
T ss_pred             cceEEEcCCCCEEEecc--ceEEEEEccCceEEEEecC--CCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence            89999999999999986  6899999999999999998  6667777776655     788998887778888887654

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.51  E-value=2.8e-11  Score=89.01  Aligned_cols=121  Identities=17%  Similarity=0.164  Sum_probs=99.4

Q ss_pred             ecCcceEEEEEeCCCCEEEEecCCC-eEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCC
Q 040370           17 QDTHNVRSVSFHPSGDFLLAGTDHP-IAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGV   95 (228)
Q Consensus        17 ~~~~~v~~~~~~~~~~~l~~~~~d~-~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~   95 (228)
                      +|...|.-..+..+++-++.|..|| .+-|+|.++++.......     -+.|.++..+|+|++++.+.....+.+.|+.
T Consensus       357 ~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~-----lg~I~av~vs~dGK~~vvaNdr~el~vidid  431 (668)
T COG4946         357 GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKD-----LGNIEAVKVSPDGKKVVVANDRFELWVIDID  431 (668)
T ss_pred             CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeCC-----ccceEEEEEcCCCcEEEEEcCceEEEEEEec
Confidence            6777888888888888999999999 899999999886544332     5679999999999999999999999999999


Q ss_pred             CCceeeEEecccccceeEEEEECCCCCEEEEeeCCC----eEEEEEccCCeeE
Q 040370           96 SANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDS----TVKLWEVSSGRLV  144 (228)
Q Consensus        96 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~----~i~~wd~~~~~~~  144 (228)
                      +++....-+..  .+-|+.+.|+|+++++|-+--+|    .|+++|+..++..
T Consensus       432 ngnv~~idkS~--~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy  482 (668)
T COG4946         432 NGNVRLIDKSE--YGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIY  482 (668)
T ss_pred             CCCeeEecccc--cceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEE
Confidence            98865443332  67899999999999999776554    6999999876643

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.51  E-value=9.7e-11  Score=83.29  Aligned_cols=213  Identities=13%  Similarity=0.168  Sum_probs=143.3

Q ss_pred             eEEEeecCcceEEEEEeCCCCEEEEecC---CCeEEEEEccc--ceEEeeeccceeeeccceeeEEeCCCCCeEEEEec-
Q 040370           12 AFRVIQDTHNVRSVSFHPSGDFLLAGTD---HPIAHLYDVNT--FQCYLSANVPEISVNGAINQVRYSSTGGMYVTASK-   85 (228)
Q Consensus        12 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~i~vw~~~~--~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-   85 (228)
                      ..+...+.+.++-++|+|+++.|.++..   +|.|..|.++.  |+....-+....  ..+...+++++++++++++.. 
T Consensus        32 ~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~--g~~p~yvsvd~~g~~vf~AnY~  109 (346)
T COG2706          32 LLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLP--GSPPCYVSVDEDGRFVFVANYH  109 (346)
T ss_pred             hhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccC--CCCCeEEEECCCCCEEEEEEcc
Confidence            3344467788899999999999988754   57788888775  453332222211  334488999999999988874 


Q ss_pred             CCeEEEEeCCC-CceeeEEecccccce----------eEEEEECCCCCEEEEeeCC-CeEEEEEccCCeeEEEEec-cee
Q 040370           86 DGAIRLWDGVS-ANCVRSIVGAHGTAE----------ATSANFTKDQRFVLSCGKD-STVKLWEVSSGRLVKQYLG-ATH  152 (228)
Q Consensus        86 dg~v~iwd~~~-~~~~~~~~~~~~~~~----------i~~~~~~~~~~~l~~~~~d-~~i~~wd~~~~~~~~~~~~-~~~  152 (228)
                      .|.|.++-++. |..........+...          +....+.|++++|++.+-. -.|.+|++..++....-.. -..
T Consensus       110 ~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~  189 (346)
T COG2706         110 SGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKP  189 (346)
T ss_pred             CceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCC
Confidence            58899999865 433222111111222          7888999999999887632 3599999997765332211 123


Q ss_pred             eeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCc-ceeEEe------ecC--CCCCcEEEEeCCCCcEEEEecC-CCCEE
Q 040370          153 TQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTA-EKVAKW------SSN--HIGAPRWIEHSPAEAAFITCGT-DRSVR  222 (228)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~-~~~~~~------~~~--~~~~v~~~~~~~~~~~l~s~~~-dg~i~  222 (228)
                      .....-+.|+|++++..+...-+++|.+|..... ..+..+      +..  .......|..+|+|++|.++.. ...|.
T Consensus       190 G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~  269 (346)
T COG2706         190 GAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIA  269 (346)
T ss_pred             CCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEE
Confidence            4455678999999999999999999999998773 222222      112  2345677899999999988753 23555


Q ss_pred             Eeee
Q 040370          223 FWKE  226 (228)
Q Consensus       223 vwd~  226 (228)
                      +|.+
T Consensus       270 ~f~V  273 (346)
T COG2706         270 VFSV  273 (346)
T ss_pred             EEEE
Confidence            5543

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.49  E-value=2.9e-11  Score=92.89  Aligned_cols=172  Identities=10%  Similarity=0.013  Sum_probs=110.6

Q ss_pred             eEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecC---CeEEEEeCCCCceeeEEecccccceeEEEEEC
Q 040370           42 IAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKD---GAIRLWDGVSANCVRSIVGAHGTAEATSANFT  118 (228)
Q Consensus        42 ~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~  118 (228)
                      .|.++|.+.+.......    + ...+....|+|+|+.|+..+.+   ..|.+||+.+++.......   ........|+
T Consensus       180 ~l~~~d~~g~~~~~l~~----~-~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~---~g~~~~~~~S  251 (430)
T PRK00178        180 TLQRSDYDGARAVTLLQ----S-REPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNF---EGLNGAPAWS  251 (430)
T ss_pred             EEEEECCCCCCceEEec----C-CCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCC---CCCcCCeEEC
Confidence            47777776544322211    1 5568889999999988776543   3699999988765432221   3344568999


Q ss_pred             CCCCEEE-EeeCCC--eEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCC--eEEEEEcCCcceeEEee
Q 040370          119 KDQRFVL-SCGKDS--TVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSN--EIVIWDALTAEKVAKWS  193 (228)
Q Consensus       119 ~~~~~l~-~~~~d~--~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~--~i~i~d~~~~~~~~~~~  193 (228)
                      |||+.|+ +...++  .|++||+.+++... +..  +........|+|+++.++.++..++  .|+++|+.+++......
T Consensus       252 pDG~~la~~~~~~g~~~Iy~~d~~~~~~~~-lt~--~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~  328 (430)
T PRK00178        252 PDGSKLAFVLSKDGNPEIYVMDLASRQLSR-VTN--HPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTF  328 (430)
T ss_pred             CCCCEEEEEEccCCCceEEEEECCCCCeEE-ccc--CCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeec
Confidence            9999877 444444  68889998765433 322  2334456789999998877655443  57777887776433321


Q ss_pred             cCCCCCcEEEEeCCCCcEEEEecCC-C--CEEEeee
Q 040370          194 SNHIGAPRWIEHSPAEAAFITCGTD-R--SVRFWKE  226 (228)
Q Consensus       194 ~~~~~~v~~~~~~~~~~~l~s~~~d-g--~i~vwd~  226 (228)
                      .+  .......|+|+++.|+..+.+ +  .|.+||+
T Consensus       329 ~~--~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl  362 (430)
T PRK00178        329 VG--NYNARPRLSADGKTLVMVHRQDGNFHVAAQDL  362 (430)
T ss_pred             CC--CCccceEECCCCCEEEEEEccCCceEEEEEEC
Confidence            12  233457899999998876643 3  3566664

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.48  E-value=1.9e-11  Score=93.27  Aligned_cols=181  Identities=14%  Similarity=0.141  Sum_probs=111.6

Q ss_pred             cCcceEEEEEeCCCCEEEEecC-----CCeEEEEEcccc---eEEeeeccceeeeccceeeEEeCCCCCeEEEEe-cCCe
Q 040370           18 DTHNVRSVSFHPSGDFLLAGTD-----HPIAHLYDVNTF---QCYLSANVPEISVNGAINQVRYSSTGGMYVTAS-KDGA   88 (228)
Q Consensus        18 ~~~~v~~~~~~~~~~~l~~~~~-----d~~i~vw~~~~~---~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~   88 (228)
                      ..+.....+|+|||+.|+..+.     +..+..|++..+   +.......   . ........|+|||+.|+..+ .+|.
T Consensus       229 ~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~---~-~~~~~~p~wSPDG~~Laf~s~~~g~  304 (428)
T PRK01029        229 LQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNE---A-FGTQGNPSFSPDGTRLVFVSNKDGR  304 (428)
T ss_pred             CCCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecC---C-CCCcCCeEECCCCCEEEEEECCCCC
Confidence            3445567899999998886542     223444676653   21111111   1 22346789999999777655 4665


Q ss_pred             EEEE--eCCC-CceeeEEecccccceeEEEEECCCCCEEEEeeCC---CeEEEEEccCCeeEEEEecceeeeeeeEEEEC
Q 040370           89 IRLW--DGVS-ANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKD---STVKLWEVSSGRLVKQYLGATHTQLRFQAVFN  162 (228)
Q Consensus        89 v~iw--d~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~  162 (228)
                      ..+|  ++.. +.....+...  ...+....|+|||+.|+..+.+   ..|.+||+.+++.......   ........|+
T Consensus       305 ~~ly~~~~~~~g~~~~~lt~~--~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~---~~~~~~p~wS  379 (428)
T PRK01029        305 PRIYIMQIDPEGQSPRLLTKK--YRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTS---PENKESPSWA  379 (428)
T ss_pred             ceEEEEECcccccceEEeccC--CCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCC---CCCccceEEC
Confidence            5555  4432 2223333332  3456778999999988876543   4699999988765433221   2234568899


Q ss_pred             CCCcEEEEeeCC--CCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCC
Q 040370          163 DTEEFVLSIDEP--SNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAE  209 (228)
Q Consensus       163 ~~~~~~~~~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~  209 (228)
                      |+++.++.+...  ...|.++|+..++.....  ...+.+...+|+|-.
T Consensus       380 pDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt--~~~g~~~~p~Ws~~~  426 (428)
T PRK01029        380 IDSLHLVYSAGNSNESELYLISLITKKTRKIV--IGSGEKRFPSWGAFP  426 (428)
T ss_pred             CCCCEEEEEECCCCCceEEEEECCCCCEEEee--cCCCcccCceecCCC
Confidence            999988765442  357888898777654433  344556778888743

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.47  E-value=3.6e-13  Score=106.52  Aligned_cols=131  Identities=12%  Similarity=0.211  Sum_probs=107.6

Q ss_pred             CCcCCccccceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeE
Q 040370            1 FFDFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMY   80 (228)
Q Consensus         1 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l   80 (228)
                      +|++..  ......+.+|.+.|..+.|+-+|.++++.++|.++++|++++.+...   .....|..++..++|.|.  .+
T Consensus       159 vW~~~~--dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~---~~~fgHsaRvw~~~~~~n--~i  231 (967)
T KOG0974|consen  159 VWKPHE--DNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLG---CTGFGHSARVWACCFLPN--RI  231 (967)
T ss_pred             EEeccc--cCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccC---cccccccceeEEEEeccc--ee
Confidence            356552  22233778999999999999999999999999999999999987554   222334899999999988  89


Q ss_pred             EEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccC
Q 040370           81 VTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSS  140 (228)
Q Consensus        81 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~  140 (228)
                      +|++.|.+.++|+.+ +..+..+..|. ...+..++..++....+|++.|+.+++||+..
T Consensus       232 ~t~gedctcrvW~~~-~~~l~~y~~h~-g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~  289 (967)
T KOG0974|consen  232 ITVGEDCTCRVWGVN-GTQLEVYDEHS-GKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG  289 (967)
T ss_pred             EEeccceEEEEEecc-cceehhhhhhh-hcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence            999999999999754 55555666654 77899999999999999999999999999754

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.47  E-value=2e-10  Score=87.27  Aligned_cols=182  Identities=10%  Similarity=0.089  Sum_probs=117.9

Q ss_pred             cceEEEEEeCCCCE-EEEecC---CCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEE-EecC--CeEEEE
Q 040370           20 HNVRSVSFHPSGDF-LLAGTD---HPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVT-ASKD--GAIRLW   92 (228)
Q Consensus        20 ~~v~~~~~~~~~~~-l~~~~~---d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-~~~d--g~v~iw   92 (228)
                      .......|+|+|+. ++..+.   +..|.++|+.+++.......     .+......|+|||+.++. .+.+  ..|.++
T Consensus       188 ~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~-----~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~  262 (419)
T PRK04043        188 GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASS-----QGMLVVSDVSKDGSKLLLTMAPKGQPDIYLY  262 (419)
T ss_pred             CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecC-----CCcEEeeEECCCCCEEEEEEccCCCcEEEEE
Confidence            36788999999985 554322   46799999988876544332     444566789999986654 3333  568888


Q ss_pred             eCCCCceeeEEecccccceeEEEEECCCCCEEEEeeC-CC--eEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEE
Q 040370           93 DGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGK-DS--TVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVL  169 (228)
Q Consensus        93 d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~--~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (228)
                      |+.+++.. .+...  ........|+|||+.|+-.+. .+  .|++.|+.+++..+....   ...  ...|+|++++++
T Consensus       263 dl~~g~~~-~LT~~--~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~---g~~--~~~~SPDG~~Ia  334 (419)
T PRK04043        263 DTNTKTLT-QITNY--PGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH---GKN--NSSVSTYKNYIV  334 (419)
T ss_pred             ECCCCcEE-EcccC--CCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC---CCc--CceECCCCCEEE
Confidence            88777643 33332  222345679999987776653 23  688889887765333321   111  247999999988


Q ss_pred             EeeCCC--------CeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecC
Q 040370          170 SIDEPS--------NEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGT  217 (228)
Q Consensus       170 ~~~~~d--------~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~  217 (228)
                      .+....        ..|.+.|+.+++..... ..  .......|+|||+.++-.+.
T Consensus       335 ~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT-~~--~~~~~p~~SPDG~~I~f~~~  387 (419)
T PRK04043        335 YSSRETNNEFGKNTFNLYLISTNSDYIRRLT-AN--GVNQFPRFSSDGGSIMFIKY  387 (419)
T ss_pred             EEEcCCCcccCCCCcEEEEEECCCCCeEECC-CC--CCcCCeEECCCCCEEEEEEc
Confidence            876543        37888898877653322 22  22335889999997766554

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.47  E-value=8.2e-10  Score=78.67  Aligned_cols=205  Identities=13%  Similarity=0.158  Sum_probs=138.3

Q ss_pred             cceEEEEEeCCCCEEEEecC-CCeEEEEEccc-ceEEeeeccceeeecc----------ceeeEEeCCCCCeEEEEec-C
Q 040370           20 HNVRSVSFHPSGDFLLAGTD-HPIAHLYDVNT-FQCYLSANVPEISVNG----------AINQVRYSSTGGMYVTASK-D   86 (228)
Q Consensus        20 ~~v~~~~~~~~~~~l~~~~~-d~~i~vw~~~~-~~~~~~~~~~~~~~~~----------~i~~~~~~~~~~~l~~~~~-d   86 (228)
                      .+-+-+++++++++++++.. .|.|.++-++. |......... .| .+          -+.+..+.|+++++++.+- -
T Consensus        89 ~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~-~h-~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~  166 (346)
T COG2706          89 SPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVV-KH-TGSGPHERQESPHVHSANFTPDGRYLVVPDLGT  166 (346)
T ss_pred             CCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeee-ec-CCCCCCccccCCccceeeeCCCCCEEEEeecCC
Confidence            34488999999999988764 57899999865 3322211110 11 22          2889999999999998863 2


Q ss_pred             CeEEEEeCCCCceeeEEecc-cccceeEEEEECCCCCEEEEee-CCCeEEEEEccCC-eeEEEEec-------ceeeeee
Q 040370           87 GAIRLWDGVSANCVRSIVGA-HGTAEATSANFTKDQRFVLSCG-KDSTVKLWEVSSG-RLVKQYLG-------ATHTQLR  156 (228)
Q Consensus        87 g~v~iwd~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~-~d~~i~~wd~~~~-~~~~~~~~-------~~~~~~~  156 (228)
                      -.|.+|++..+.....-... ........|.|+|++++.+... -+++|-+|..... ..+..++.       -......
T Consensus       167 Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~  246 (346)
T COG2706         167 DRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWA  246 (346)
T ss_pred             ceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCce
Confidence            46999999877543221110 1145568899999999877655 5889999998763 22222221       1134456


Q ss_pred             eEEEECCCCcEEEEeeCCCCeEEEEEcCCcce-eE--EeecCCCCCcEEEEeCCCCcEEEEecCC-CCEEEeee
Q 040370          157 FQAVFNDTEEFVLSIDEPSNEIVIWDALTAEK-VA--KWSSNHIGAPRWIEHSPAEAAFITCGTD-RSVRFWKE  226 (228)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~-~~--~~~~~~~~~v~~~~~~~~~~~l~s~~~d-g~i~vwd~  226 (228)
                      ..+..+++|+++.++......|.+|.+..... +.  .....+....+...|+|.+++|++++.+ ..|.+|.+
T Consensus       247 aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~  320 (346)
T COG2706         247 AAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFER  320 (346)
T ss_pred             eEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEE
Confidence            77889999999999987777899987754322 21  1213444558899999999999998864 45777764

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=99.46  E-value=3.9e-10  Score=78.02  Aligned_cols=200  Identities=15%  Similarity=0.141  Sum_probs=130.5

Q ss_pred             EEEeCCCCEEEEecCCCeEEEEEcccc--eEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCCCceeeE
Q 040370           25 VSFHPSGDFLLAGTDHPIAHLYDVNTF--QCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRS  102 (228)
Q Consensus        25 ~~~~~~~~~l~~~~~d~~i~vw~~~~~--~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~  102 (228)
                      ++.+++|+.||+-. |..|.|-..++.  ..+...+.+... ...=.-++|+||+..||.+...|+|+++|+.. ..+..
T Consensus         3 ~~~~~~Gk~lAi~q-d~~iEiRsa~Ddf~si~~kcqVpkD~-~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g-~~lf~   79 (282)
T PF15492_consen    3 LALSSDGKLLAILQ-DQCIEIRSAKDDFSSIIGKCQVPKDP-NPQWRKLAWSPDCTLLAYAESTGTIRVFDLMG-SELFV   79 (282)
T ss_pred             eeecCCCcEEEEEe-ccEEEEEeccCCchheeEEEecCCCC-CchheEEEECCCCcEEEEEcCCCeEEEEeccc-ceeEE
Confidence            56677888887654 677877766553  222333333322 34457899999999999999999999999864 33333


Q ss_pred             Eeccc-----ccceeEEEEECCC------CCEEEEeeCCCeEEEEEccCC-----eeEEEEecce-eeeeeeEEEECCCC
Q 040370          103 IVGAH-----GTAEATSANFTKD------QRFVLSCGKDSTVKLWEVSSG-----RLVKQYLGAT-HTQLRFQAVFNDTE  165 (228)
Q Consensus       103 ~~~~~-----~~~~i~~~~~~~~------~~~l~~~~~d~~i~~wd~~~~-----~~~~~~~~~~-~~~~~~~~~~~~~~  165 (228)
                      +....     -...|..+.|.+.      ...|++-..+|.++-|-+..+     +....+.... .+..+..+.++|..
T Consensus        80 I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h  159 (282)
T PF15492_consen   80 IPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKH  159 (282)
T ss_pred             cCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCC
Confidence            33221     1345666766652      225677778888888776432     2333333211 35678889999998


Q ss_pred             cEEEEeeCCCC----------eEEEEEcCCcceeEEe----------------------------ecCCCCCcEEEEeCC
Q 040370          166 EFVLSIDEPSN----------EIVIWDALTAEKVAKW----------------------------SSNHIGAPRWIEHSP  207 (228)
Q Consensus       166 ~~~~~~~~~d~----------~i~i~d~~~~~~~~~~----------------------------~~~~~~~v~~~~~~~  207 (228)
                      +.++++|....          .+..|.+-++.+....                            .......|..+..||
T Consensus       160 ~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSP  239 (282)
T PF15492_consen  160 RLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSP  239 (282)
T ss_pred             CEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECC
Confidence            88888776432          3556655333211110                            012355788999999


Q ss_pred             CCcEEEEecCCCCEEEeeec
Q 040370          208 AEAAFITCGTDRSVRFWKEI  227 (228)
Q Consensus       208 ~~~~l~s~~~dg~i~vwd~~  227 (228)
                      ||..||+...+|.|.+|++.
T Consensus       240 dg~~La~ih~sG~lsLW~iP  259 (282)
T PF15492_consen  240 DGSLLACIHFSGSLSLWEIP  259 (282)
T ss_pred             CCCEEEEEEcCCeEEEEecC
Confidence            99999999999999999974

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.46  E-value=3.6e-11  Score=92.41  Aligned_cols=171  Identities=10%  Similarity=0.065  Sum_probs=107.9

Q ss_pred             eEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEec-C--CeEEEEeCCCCceeeEEecccccceeEEEEEC
Q 040370           42 IAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASK-D--GAIRLWDGVSANCVRSIVGAHGTAEATSANFT  118 (228)
Q Consensus        42 ~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d--g~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~  118 (228)
                      .|.++|...........    . ...+....|+|+|+.|+..+. +  ..|.+||+.+++.......   ........|+
T Consensus       199 ~l~i~d~dG~~~~~l~~----~-~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~---~g~~~~~~wS  270 (448)
T PRK04792        199 QLMIADYDGYNEQMLLR----S-PEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSF---PGINGAPRFS  270 (448)
T ss_pred             EEEEEeCCCCCceEeec----C-CCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCC---CCCcCCeeEC
Confidence            56667765543221111    1 557888999999998887654 3  2588999988765332221   2233468999


Q ss_pred             CCCCEEEE-eeCCCe--EEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCC--eEEEEEcCCcceeEEee
Q 040370          119 KDQRFVLS-CGKDST--VKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSN--EIVIWDALTAEKVAKWS  193 (228)
Q Consensus       119 ~~~~~l~~-~~~d~~--i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~--~i~i~d~~~~~~~~~~~  193 (228)
                      ||++.|+. .+.++.  |+++|+.+++... +..  +........|+|+++.++.++..++  .|+++|+.+++......
T Consensus       271 PDG~~La~~~~~~g~~~Iy~~dl~tg~~~~-lt~--~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~  347 (448)
T PRK04792        271 PDGKKLALVLSKDGQPEIYVVDIATKALTR-ITR--HRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTF  347 (448)
T ss_pred             CCCCEEEEEEeCCCCeEEEEEECCCCCeEE-Ccc--CCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEec
Confidence            99998764 455664  8888988765433 322  2334466789999998887665444  56667777776443321


Q ss_pred             cCCCCCcEEEEeCCCCcEEEEecC-CCCEEEee
Q 040370          194 SNHIGAPRWIEHSPAEAAFITCGT-DRSVRFWK  225 (228)
Q Consensus       194 ~~~~~~v~~~~~~~~~~~l~s~~~-dg~i~vwd  225 (228)
                      .+  .......|+|+|++|+..+. ++...||-
T Consensus       348 ~g--~~~~~~~~SpDG~~l~~~~~~~g~~~I~~  378 (448)
T PRK04792        348 EG--EQNLGGSITPDGRSMIMVNRTNGKFNIAR  378 (448)
T ss_pred             CC--CCCcCeeECCCCCEEEEEEecCCceEEEE
Confidence            22  22345789999998877654 45455543

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.46  E-value=1.3e-13  Score=103.10  Aligned_cols=208  Identities=14%  Similarity=0.204  Sum_probs=141.4

Q ss_pred             eeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccce-EEe--eeccceeeeccceeeEEeCCCCCeEEEEecCC
Q 040370           11 RAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQ-CYL--SANVPEISVNGAINQVRYSSTGGMYVTASKDG   87 (228)
Q Consensus        11 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~-~~~--~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg   87 (228)
                      +...+.+|...|+.++--.+.+.+++++.|.+|++|.++... ...  ..+.....|+.+|.++.|-.+.++++++  ||
T Consensus       727 rL~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~  804 (1034)
T KOG4190|consen  727 RLCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DG  804 (1034)
T ss_pred             eeecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cC
Confidence            455667999999999887788899999999999999987521 111  1111112338899999999888877764  78


Q ss_pred             eEEEEeCCCCceeeEEecccccceeEEEEECC--CCCEEEEe-eCCCeEEEEEccCCeeEEEEecc---eeeeeeeEEEE
Q 040370           88 AIRLWDGVSANCVRSIVGAHGTAEATSANFTK--DQRFVLSC-GKDSTVKLWEVSSGRLVKQYLGA---THTQLRFQAVF  161 (228)
Q Consensus        88 ~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~-~~d~~i~~wd~~~~~~~~~~~~~---~~~~~~~~~~~  161 (228)
                      -|++||.--++.+..+......+.+..+..-|  +...++.| +...+|+++|.+..+....++..   .......+++.
T Consensus       805 giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaV  884 (1034)
T KOG4190|consen  805 GIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAV  884 (1034)
T ss_pred             cceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEe
Confidence            99999988777665443322222333333333  34444444 67889999999998877666532   23355677888


Q ss_pred             CCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEE
Q 040370          162 NDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRF  223 (228)
Q Consensus       162 ~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~v  223 (228)
                      .+.|+.++++-+ +|.|.+.|.++|+.+..+ ..-.-....++ .|..+.|+....|.++.+
T Consensus       885 a~~GN~lAa~LS-nGci~~LDaR~G~vINsw-rpmecdllqla-apsdq~L~~saldHslaV  943 (1034)
T KOG4190|consen  885 ADKGNKLAAALS-NGCIAILDARNGKVINSW-RPMECDLLQLA-APSDQALAQSALDHSLAV  943 (1034)
T ss_pred             ccCcchhhHHhc-CCcEEEEecCCCceeccC-Ccccchhhhhc-CchhHHHHhhcccceeEe
Confidence            899999888766 699999999999988877 33222333333 245555665556666655

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=99.44  E-value=1.1e-12  Score=89.09  Aligned_cols=199  Identities=12%  Similarity=0.140  Sum_probs=122.4

Q ss_pred             eEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEE----------eCCCCCeEEEEecCCeEEE
Q 040370           22 VRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVR----------YSSTGGMYVTASKDGAIRL   91 (228)
Q Consensus        22 v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~----------~~~~~~~l~~~~~dg~v~i   91 (228)
                      ++.+.+. ....|+++..++.+.....-.+.+.........  .++..+++          .+-.++.++++..||.+.+
T Consensus        39 ~~~~~~v-~~~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~--i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v  115 (319)
T KOG4714|consen   39 LSKVSLS-AEYILFTGETSSQIISLGKGRGRCISLWERDDG--IDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAV  115 (319)
T ss_pred             EEEeech-hhheeecccchhheeeeccceEEEechhhcccC--cCceeeeeccCCCCCcccccccCCceEecCCCceEEE
Confidence            5555554 344567777777666665544433222111100  11222222          2223567999999999999


Q ss_pred             EeCCCCc-eeeEEecccccceeEEEEECCCCCEEEEeeC-----CCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCC
Q 040370           92 WDGVSAN-CVRSIVGAHGTAEATSANFTKDQRFVLSCGK-----DSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTE  165 (228)
Q Consensus        92 wd~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-----d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (228)
                      ++.+.-. ...++...+  ..-.+.+....++.+.++..     -+..+.|+++..+....-.  .....+.+++-+|..
T Consensus       116 ~s~~~~~~~~~~i~~~~--~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~--~~~~~v~~l~~hp~q  191 (319)
T KOG4714|consen  116 FSTDKDLALMSRIPSIH--SGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSK--KALDAVTALCSHPAQ  191 (319)
T ss_pred             EechHHHhhhhhccccc--ccccccceeecccEEecCCcceEeeccceeeecccccccccccc--cccccchhhhCCccc
Confidence            9987521 111111111  01112222223444444321     1235566665433222111  123347888899999


Q ss_pred             cEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCC-CCcEEEEecCCCCEEEeeec
Q 040370          166 EFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSP-AEAAFITCGTDRSVRFWKEI  227 (228)
Q Consensus       166 ~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~vwd~~  227 (228)
                      ..++++|++||.+.+||.++...+..+...|+.+++.+.|+| ++..|+++++||.+-.||..
T Consensus       192 q~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas  254 (319)
T KOG4714|consen  192 QHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAS  254 (319)
T ss_pred             ccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCC
Confidence            999999999999999999999877777789999999999999 67899999999999999853

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.44  E-value=2.3e-12  Score=107.56  Aligned_cols=159  Identities=16%  Similarity=0.240  Sum_probs=126.7

Q ss_pred             ccceeeEEeCCCCCeEEEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeE
Q 040370           65 NGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLV  144 (228)
Q Consensus        65 ~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~  144 (228)
                      -..|.++.=+|...+.+||+.||.+++|....++.+..+.... ...++.+.|+.+|+.+..+..||.+-+|... .++.
T Consensus      2208 v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g-~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~ 2285 (2439)
T KOG1064|consen 2208 VENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAG-NSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PKPY 2285 (2439)
T ss_pred             cCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccC-cchhhhhhhcccCCceeeeccCCceeecccC-Ccce
Confidence            4567888889988999999999999999999999888887765 4889999999999999999999999999986 4444


Q ss_pred             EEEecceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEe
Q 040370          145 KQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFW  224 (228)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vw  224 (228)
                      ...+.  |......+.|-.....-.-...+++.+.+||..-......+...|.+.++++++-|..++|++||.+|.|++|
T Consensus      2286 ~s~qc--hnk~~~Df~Fi~s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr~G~v~l~ 2363 (2439)
T KOG1064|consen 2286 TSWQC--HNKALSDFRFIGSLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGRKGEVCLF 2363 (2439)
T ss_pred             ecccc--CCccccceeeeehhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCCcCcEEEe
Confidence            44444  5556666666552222222234578999999765444444446899999999999999999999999999999


Q ss_pred             eec
Q 040370          225 KEI  227 (228)
Q Consensus       225 d~~  227 (228)
                      |++
T Consensus      2364 D~r 2366 (2439)
T KOG1064|consen 2364 DIR 2366 (2439)
T ss_pred             ehH
Confidence            975

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.41  E-value=6.3e-10  Score=93.27  Aligned_cols=205  Identities=11%  Similarity=0.122  Sum_probs=131.4

Q ss_pred             ceEEEEEeCCCCEEEEe-cCCCeEEEEEcccceEEeeeccc------ee------eeccceeeEEeCC-CCCeEEEEecC
Q 040370           21 NVRSVSFHPSGDFLLAG-TDHPIAHLYDVNTFQCYLSANVP------EI------SVNGAINQVRYSS-TGGMYVTASKD   86 (228)
Q Consensus        21 ~v~~~~~~~~~~~l~~~-~~d~~i~vw~~~~~~~~~~~~~~------~~------~~~~~i~~~~~~~-~~~~l~~~~~d   86 (228)
                      ....++++++++.|+++ ..++.|+++|+.++.........      .+      ..-.....++++| ++..+++.+.+
T Consensus       625 ~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~  704 (1057)
T PLN02919        625 RPQGLAYNAKKNLLYVADTENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQ  704 (1057)
T ss_pred             CCcEEEEeCCCCEEEEEeCCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCC
Confidence            35788999988766554 44578999998776532211100      00      0012346799999 56667777788


Q ss_pred             CeEEEEeCCCCceeeEEecc-------------cccceeEEEEECCCCCEE-EEeeCCCeEEEEEccCCeeEEEEecc--
Q 040370           87 GAIRLWDGVSANCVRSIVGA-------------HGTAEATSANFTKDQRFV-LSCGKDSTVKLWEVSSGRLVKQYLGA--  150 (228)
Q Consensus        87 g~v~iwd~~~~~~~~~~~~~-------------~~~~~i~~~~~~~~~~~l-~~~~~d~~i~~wd~~~~~~~~~~~~~--  150 (228)
                      +.|++||..++.... +...             ..-.....++++|+++.| ++-+.++.|++||+.++.......+.  
T Consensus       705 ~~I~v~d~~~g~v~~-~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~  783 (1057)
T PLN02919        705 HQIWEYNISDGVTRV-FSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPT  783 (1057)
T ss_pred             CeEEEEECCCCeEEE-EecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccc
Confidence            999999987765321 1110             001234679999998854 45556789999999876532111000  


Q ss_pred             -----------------eeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeec------------CCCCCcE
Q 040370          151 -----------------THTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSS------------NHIGAPR  201 (228)
Q Consensus       151 -----------------~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~------------~~~~~v~  201 (228)
                                       ..-.....+++++++..++ +...++.|++||..++........            +......
T Consensus       784 ~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYV-ADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~  862 (1057)
T PLN02919        784 FSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYV-ADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPA  862 (1057)
T ss_pred             cCcccccccCCCCchhhhhccCCceeeEeCCCcEEE-EECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCce
Confidence                             0011234677888887544 455579999999887655432211            1223578


Q ss_pred             EEEeCCCCcEEEEecCCCCEEEeeec
Q 040370          202 WIEHSPAEAAFITCGTDRSVRFWKEI  227 (228)
Q Consensus       202 ~~~~~~~~~~l~s~~~dg~i~vwd~~  227 (228)
                      .++++++|+++++-+.+++|++||+.
T Consensus       863 GIavd~dG~lyVaDt~Nn~Irvid~~  888 (1057)
T PLN02919        863 GLALGENGRLFVADTNNSLIRYLDLN  888 (1057)
T ss_pred             EEEEeCCCCEEEEECCCCEEEEEECC
Confidence            89999999999999999999999963

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.40  E-value=9.7e-12  Score=87.77  Aligned_cols=205  Identities=19%  Similarity=0.230  Sum_probs=139.0

Q ss_pred             cCcceEEEEEeCCC--CEEEEecCCCeEEEEEcccceEEe---------------eeccc-----------------eee
Q 040370           18 DTHNVRSVSFHPSG--DFLLAGTDHPIAHLYDVNTFQCYL---------------SANVP-----------------EIS   63 (228)
Q Consensus        18 ~~~~v~~~~~~~~~--~~l~~~~~d~~i~vw~~~~~~~~~---------------~~~~~-----------------~~~   63 (228)
                      -...|..+.|.+++  ..++..+.|.+|++|.+.......               .++.+                 ...
T Consensus        83 ieEKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNa  162 (433)
T KOG1354|consen   83 IEEKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANA  162 (433)
T ss_pred             hhhhhhhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeecccc
Confidence            35678999998854  567788889999999875422111               00110                 112


Q ss_pred             eccceeeEEeCCCCCeEEEEecCCeEEEEeCCCCceeeEEec---c---cccceeEEEEECC-CCCEEEEeeCCCeEEEE
Q 040370           64 VNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVG---A---HGTAEATSANFTK-DQRFVLSCGKDSTVKLW  136 (228)
Q Consensus        64 ~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~---~---~~~~~i~~~~~~~-~~~~l~~~~~d~~i~~w  136 (228)
                      |.--|+++.++.|+..++++ .|-.|.+|+++-......+..   +   .-..-|++..|+| ..+.++-.+..|+|++-
T Consensus       163 HtyhiNSIS~NsD~Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLc  241 (433)
T KOG1354|consen  163 HTYHINSISVNSDKETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLC  241 (433)
T ss_pred             ceeEeeeeeecCccceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEe
Confidence            35668999999999888876 478899999875433222211   1   1134678899999 56778888899999999


Q ss_pred             EccCCeeEE----EEecce----------eeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCC-cceeEEeecCCC----
Q 040370          137 EVSSGRLVK----QYLGAT----------HTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALT-AEKVAKWSSNHI----  197 (228)
Q Consensus       137 d~~~~~~~~----~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~-~~~~~~~~~~~~----  197 (228)
                      |+|...+.-    .+..+.          .-..+..+.|+++|+|+++-..  -+|++||+.. .+++.+. .-|.    
T Consensus       242 DmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy--ltvk~wD~nme~~pv~t~-~vh~~lr~  318 (433)
T KOG1354|consen  242 DMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY--LTVKLWDLNMEAKPVETY-PVHEYLRS  318 (433)
T ss_pred             echhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc--ceeEEEeccccCCcceEE-eehHhHHH
Confidence            998533211    111100          1235678899999999998654  8999999954 4444444 3332    


Q ss_pred             --------CC---cEEEEeCCCCcEEEEecCCCCEEEeee
Q 040370          198 --------GA---PRWIEHSPAEAAFITCGTDRSVRFWKE  226 (228)
Q Consensus       198 --------~~---v~~~~~~~~~~~l~s~~~dg~i~vwd~  226 (228)
                              ..   -..++|+.++.+++||+..+.++++++
T Consensus       319 kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~  358 (433)
T KOG1354|consen  319 KLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNL  358 (433)
T ss_pred             HHHHHhhccchhheeEEEEcCCcceEecccccceEEEecC
Confidence                    12   234789889999999999999999983

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.40  E-value=2.3e-11  Score=85.79  Aligned_cols=160  Identities=14%  Similarity=0.246  Sum_probs=106.8

Q ss_pred             EeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeC
Q 040370           15 VIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDG   94 (228)
Q Consensus        15 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~   94 (228)
                      ...|...+..+-|+-....+++.+.|..+.---.+.+..+.....     ....+++.+.-.  +...|...|.|.+-.+
T Consensus       110 ~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~-----~~~~t~~~~d~~--~~fvGd~~gqvt~lr~  182 (404)
T KOG1409|consen  110 YLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNF-----ETPASALQFDAL--YAFVGDHSGQITMLKL  182 (404)
T ss_pred             hhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEe-----eccCCCCceeeE--EEEecccccceEEEEE
Confidence            346889999999998888999999988764444444443222221     111222222211  5566666777666655


Q ss_pred             CC--CceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEee
Q 040370           95 VS--ANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSID  172 (228)
Q Consensus        95 ~~--~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (228)
                      ..  -..+.++.++  ...+.+++|.|....|++|..|..+.+||+.-.+-. .+....+...+..+...+.-..+++.+
T Consensus       183 ~~~~~~~i~~~~~h--~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~-~~el~gh~~kV~~l~~~~~t~~l~S~~  259 (404)
T KOG1409|consen  183 EQNGCQLITTFNGH--TGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGT-AYELQGHNDKVQALSYAQHTRQLISCG  259 (404)
T ss_pred             eecCCceEEEEcCc--ccceEEEEEcCCCcEEEeccccCceEEEeccCCcce-eeeeccchhhhhhhhhhhhheeeeecc
Confidence            43  4556666665  889999999999999999999999999999654322 222223566666666666666777765


Q ss_pred             CCCCeEEEEEcCC
Q 040370          173 EPSNEIVIWDALT  185 (228)
Q Consensus       173 ~~d~~i~i~d~~~  185 (228)
                      . ||.|.+|+++.
T Consensus       260 e-dg~i~~w~mn~  271 (404)
T KOG1409|consen  260 E-DGGIVVWNMNV  271 (404)
T ss_pred             C-CCeEEEEeccc
Confidence            5 89999999843

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=99.40  E-value=3.4e-12  Score=90.06  Aligned_cols=163  Identities=13%  Similarity=0.164  Sum_probs=125.1

Q ss_pred             EEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCCC-----ceeeEEeccccc
Q 040370           35 LAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSA-----NCVRSIVGAHGT  109 (228)
Q Consensus        35 ~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~-----~~~~~~~~~~~~  109 (228)
                      ++.+.+..|-+-|++++.... +..     .+.|.++.|...+++++.|..+|.|...|++.+     .+...+. |  .
T Consensus       228 fs~G~sqqv~L~nvetg~~qs-f~s-----ksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly-h--~  298 (425)
T KOG2695|consen  228 FSVGLSQQVLLTNVETGHQQS-FQS-----KSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY-H--D  298 (425)
T ss_pred             ecccccceeEEEEeecccccc-ccc-----chhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEE-c--C
Confidence            344456678899998876422 221     778999999988999999999999999999865     2333333 2  7


Q ss_pred             ceeEEEEECC-CCCEEEEeeCCCeEEEEEccCCee---EEEEecceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCC
Q 040370          110 AEATSANFTK-DQRFVLSCGKDSTVKLWEVSSGRL---VKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALT  185 (228)
Q Consensus       110 ~~i~~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~  185 (228)
                      ..|+++..-. ++++|++.+.+|+|++||++.-+.   +.++++|........+...+....++++| +|...+||.++.
T Consensus       299 Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~G-dDcytRiWsl~~  377 (425)
T KOG2695|consen  299 SSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVG-DDCYTRIWSLDS  377 (425)
T ss_pred             cchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEcc-CeeEEEEEeccc
Confidence            7888888776 788999999999999999997666   88899887777777777888888888855 489999999999


Q ss_pred             cceeEEeecCC---CCCcEEEEeCC
Q 040370          186 AEKVAKWSSNH---IGAPRWIEHSP  207 (228)
Q Consensus       186 ~~~~~~~~~~~---~~~v~~~~~~~  207 (228)
                      +..+.+.+...   ...+.+++|..
T Consensus       378 ghLl~tipf~~s~~e~d~~sv~~~s  402 (425)
T KOG2695|consen  378 GHLLCTIPFPYSASEVDIPSVAFDS  402 (425)
T ss_pred             CceeeccCCCCccccccccceehhc
Confidence            99888874322   22455566643

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.40  E-value=1.2e-11  Score=86.32  Aligned_cols=209  Identities=16%  Similarity=0.236  Sum_probs=137.6

Q ss_pred             cCcceEEEEEeCCCCEEEEecCCCeEEEEEcccce-EEe----eeccce--------eeeccceeeEEeCCCC--CeEEE
Q 040370           18 DTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQ-CYL----SANVPE--------ISVNGAINQVRYSSTG--GMYVT   82 (228)
Q Consensus        18 ~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~-~~~----~~~~~~--------~~~~~~i~~~~~~~~~--~~l~~   82 (228)
                      ....|+++.|...|.++++|...|.|.++.-+... +..    .++.+.        ......|..+.|..++  ..++.
T Consensus        25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl  104 (460)
T COG5170          25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL  104 (460)
T ss_pred             ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence            45689999999999999999999999999766533 111    111111        0114568888887643  36777


Q ss_pred             EecCCeEEEEeCCCCcee-----------------------------------------eEEecccccceeEEEEECCCC
Q 040370           83 ASKDGAIRLWDGVSANCV-----------------------------------------RSIVGAHGTAEATSANFTKDQ  121 (228)
Q Consensus        83 ~~~dg~v~iwd~~~~~~~-----------------------------------------~~~~~~~~~~~i~~~~~~~~~  121 (228)
                      .+.|.+|++|.+......                                         ..+....|..-+.++.|+.|.
T Consensus       105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~  184 (460)
T COG5170         105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK  184 (460)
T ss_pred             ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence            788999999986543100                                         001111236678899999998


Q ss_pred             CEEEEeeCCCeEEEEEccCCeeEEE---Eecce---eeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeE-----
Q 040370          122 RFVLSCGKDSTVKLWEVSSGRLVKQ---YLGAT---HTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVA-----  190 (228)
Q Consensus       122 ~~l~~~~~d~~i~~wd~~~~~~~~~---~~~~~---~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~-----  190 (228)
                      +.++++ .|=.|.+|++.-......   ++.+.   -...+.+..|+|....++.-++..|.|++-|+|......     
T Consensus       185 et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~kl  263 (460)
T COG5170         185 ETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKL  263 (460)
T ss_pred             heeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhh
Confidence            888877 567899999875432222   22211   133467788898876655545556999999998543211     


Q ss_pred             -Ee---------ecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeeecC
Q 040370          191 -KW---------SSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEIL  228 (228)
Q Consensus       191 -~~---------~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~l  228 (228)
                       ..         ..+-...|..+.|+++|+++++-+. -+|++||..|
T Consensus       264 fe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm  310 (460)
T COG5170         264 FELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNM  310 (460)
T ss_pred             hhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEeccc
Confidence             11         1123456888999999999987654 5799999876

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=99.40  E-value=4e-10  Score=77.28  Aligned_cols=198  Identities=15%  Similarity=0.096  Sum_probs=128.6

Q ss_pred             EEEEeC-----CCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCC-CCeEEEEecCCeEEEEeCCCC
Q 040370           24 SVSFHP-----SGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSST-GGMYVTASKDGAIRLWDGVSA   97 (228)
Q Consensus        24 ~~~~~~-----~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~v~iwd~~~~   97 (228)
                      .+.|-|     ...+||.|+..|...+|...+.+......-  .+ ...|+-+.=..+ .-.+..++.|.++++.+++-+
T Consensus        72 g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd--~s-nn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~  148 (344)
T KOG4532|consen   72 GMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCD--VS-NNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGD  148 (344)
T ss_pred             cccccchHhhccccEEEeccccceeeeecccCcccceeeec--cc-ccchhhhhhhcccccceeeccCCcceeEEEEecC
Confidence            455655     456899999999999999987653322221  11 222221111111 224667888999999888755


Q ss_pred             ceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCC-eeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCC
Q 040370           98 NCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSG-RLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSN  176 (228)
Q Consensus        98 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  176 (228)
                      .........  ...+.+++++++++++++.+....|..|.+... +.+.............+..|+.....+++ +.+||
T Consensus       149 s~~~~~h~~--~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv-~~Qdg  225 (344)
T KOG4532|consen  149 SNKFAVHNQ--NLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAV-VFQDG  225 (344)
T ss_pred             cccceeecc--ccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEE-EecCC
Confidence            443333222  245889999999999999999999999998753 33333333334555677778877766666 55589


Q ss_pred             eEEEEEcCCcceeEEe----ecCCCCCcEEEEeCCCCc--EEEEecCCCCEEEeeec
Q 040370          177 EIVIWDALTAEKVAKW----SSNHIGAPRWIEHSPAEA--AFITCGTDRSVRFWKEI  227 (228)
Q Consensus       177 ~i~i~d~~~~~~~~~~----~~~~~~~v~~~~~~~~~~--~l~s~~~dg~i~vwd~~  227 (228)
                      .+.|||+|....+...    ...|.+.+..+.|++.|.  +|+..-.-+.+.+-|++
T Consensus       226 ~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R  282 (344)
T KOG4532|consen  226 TCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTR  282 (344)
T ss_pred             cEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcc
Confidence            9999999986654433    246899999999998553  44444344556666653

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.39  E-value=5.2e-11  Score=84.07  Aligned_cols=201  Identities=12%  Similarity=0.192  Sum_probs=145.7

Q ss_pred             CcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCCCc
Q 040370           19 THNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSAN   98 (228)
Q Consensus        19 ~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~   98 (228)
                      +.+++++.+.++...|++|-.+|++.-+.+...-...........|...+..+.|+.....+++.+.|..+.---.+.+.
T Consensus        68 P~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~  147 (404)
T KOG1409|consen   68 PSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGN  147 (404)
T ss_pred             CCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCC
Confidence            57899999999999999999999998887754322222222223348899999999888899999999877655555555


Q ss_pred             eeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccC--CeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCC
Q 040370           99 CVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSS--GRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSN  176 (228)
Q Consensus        99 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  176 (228)
                      .+.....   ....+++.+.-.  +...|...|.|..-.+..  -.++.++.+  +...+.+..|.+....++++.+ |.
T Consensus       148 ~lg~Y~~---~~~~t~~~~d~~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~~--h~~~~~~l~Wd~~~~~LfSg~~-d~  219 (404)
T KOG1409|consen  148 RLGGYNF---ETPASALQFDAL--YAFVGDHSGQITMLKLEQNGCQLITTFNG--HTGEVTCLKWDPGQRLLFSGAS-DH  219 (404)
T ss_pred             cccceEe---eccCCCCceeeE--EEEecccccceEEEEEeecCCceEEEEcC--cccceEEEEEcCCCcEEEeccc-cC
Confidence            4433222   111122222211  566777777776665543  345555655  7888999999998888888666 79


Q ss_pred             eEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370          177 EIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEI  227 (228)
Q Consensus       177 ~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~  227 (228)
                      .+.+||+--.+-......+|...|..+..-+--+.|++++.||.|.+|+..
T Consensus       220 ~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn  270 (404)
T KOG1409|consen  220 SVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMN  270 (404)
T ss_pred             ceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEecc
Confidence            999999976666655557999999999888888899999999999999963

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.38  E-value=3.2e-10  Score=93.46  Aligned_cols=197  Identities=11%  Similarity=0.148  Sum_probs=137.2

Q ss_pred             CcceEEEEEeCCCCEEEEecCCCeEEEE----EcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeC
Q 040370           19 THNVRSVSFHPSGDFLLAGTDHPIAHLY----DVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDG   94 (228)
Q Consensus        19 ~~~v~~~~~~~~~~~l~~~~~d~~i~vw----~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~   94 (228)
                      ...|.++.|-++...++.+..+|.|.+.    +.........     +.....|.+++||||+..++....++++.+.+ 
T Consensus        75 ~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~V-----G~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt-  148 (928)
T PF04762_consen   75 NDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIEIV-----GSVDSGILAASWSPDEELLALVTGEGNLLLMT-  148 (928)
T ss_pred             CCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeEEE-----EEEcCcEEEEEECCCcCEEEEEeCCCEEEEEe-
Confidence            4679999999999999999999999999    4444332211     22277899999999999999999899888864 


Q ss_pred             CCCcee------------------------eEEeccc----------------------ccceeEEEEECCCCCEEEEee
Q 040370           95 VSANCV------------------------RSIVGAH----------------------GTAEATSANFTKDQRFVLSCG  128 (228)
Q Consensus        95 ~~~~~~------------------------~~~~~~~----------------------~~~~i~~~~~~~~~~~l~~~~  128 (228)
                      ++.+.+                        ..|.+..                      ....-..++|-.||+++|+.+
T Consensus       149 ~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss  228 (928)
T PF04762_consen  149 RDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSS  228 (928)
T ss_pred             ccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEE
Confidence            111111                        1110000                      012345788999999999877


Q ss_pred             C---C---CeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCC--CCeEEEEEcCCcceeEEeec---CCC
Q 040370          129 K---D---STVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEP--SNEIVIWDALTAEKVAKWSS---NHI  197 (228)
Q Consensus       129 ~---d---~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--d~~i~i~d~~~~~~~~~~~~---~~~  197 (228)
                      -   .   +.+|||+- .|....+-+.  ....-..++|.|.|..++++...  ...|.+|. |+|-....+..   ...
T Consensus       229 ~~~~~~~~R~iRVy~R-eG~L~stSE~--v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfE-rNGLrhgeF~l~~~~~~  304 (928)
T PF04762_consen  229 VEPETGSRRVIRVYSR-EGELQSTSEP--VDGLEGALSWRPSGNLIASSQRLPDRHDVVFFE-RNGLRHGEFTLRFDPEE  304 (928)
T ss_pred             EEcCCCceeEEEEECC-CceEEecccc--CCCccCCccCCCCCCEEEEEEEcCCCcEEEEEe-cCCcEeeeEecCCCCCC
Confidence            4   2   57999995 4665544432  33445678999999999887642  34566777 56655554422   345


Q ss_pred             CCcEEEEeCCCCcEEEEecCCCCEEEeee
Q 040370          198 GAPRWIEHSPAEAAFITCGTDRSVRFWKE  226 (228)
Q Consensus       198 ~~v~~~~~~~~~~~l~s~~~dg~i~vwd~  226 (228)
                      ..|..+.|++++..||..-.|. |.+|-.
T Consensus       305 ~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~  332 (928)
T PF04762_consen  305 EKVIELAWNSDSEILAVWLEDR-VQLWTR  332 (928)
T ss_pred             ceeeEEEECCCCCEEEEEecCC-ceEEEe
Confidence            6899999999999999977665 999954

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.37  E-value=2e-11  Score=94.11  Aligned_cols=121  Identities=12%  Similarity=0.178  Sum_probs=97.9

Q ss_pred             cCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEE------------eeeccceeeeccceeeEEeCCCCCeEEEEec
Q 040370           18 DTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCY------------LSANVPEISVNGAINQVRYSSTGGMYVTASK   85 (228)
Q Consensus        18 ~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~------------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~   85 (228)
                      ......|++|+.+..++|+|+.||.++|..+.+...-            ..-+...+| ++.|.-+.|+.+.+.|-|...
T Consensus        13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH-~~sV~vvTWNe~~QKLTtSDt   91 (1189)
T KOG2041|consen   13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGH-NASVMVVTWNENNQKLTTSDT   91 (1189)
T ss_pred             CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccC-cceEEEEEeccccccccccCC
Confidence            3467899999999999999999999999988653311            112233445 899999999999999999999


Q ss_pred             CCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEcc
Q 040370           86 DGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVS  139 (228)
Q Consensus        86 dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~  139 (228)
                      +|.|.+|-+-++.....+.....++.|.+++|+.+|..++....||.|.+=.++
T Consensus        92 ~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvd  145 (1189)
T KOG2041|consen   92 SGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVD  145 (1189)
T ss_pred             CceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeec
Confidence            999999999888766555555557889999999999999999999988776554

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.36  E-value=1e-11  Score=95.76  Aligned_cols=218  Identities=16%  Similarity=0.262  Sum_probs=143.5

Q ss_pred             CCcCCccccc-eeEEEeecCcceEEEEEeC-CCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCC
Q 040370            1 FFDFSKATAK-RAFRVIQDTHNVRSVSFHP-SGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGG   78 (228)
Q Consensus         1 iwd~~~~~~~-~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~   78 (228)
                      +|++...... -.+-+.+|...|+.+.|+| ....+++++-|-.+..||+.+..........  - ......++|+-...
T Consensus        95 iwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~--w-~s~asqVkwnyk~p  171 (1081)
T KOG0309|consen   95 IWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSS--W-RSAASQVKWNYKDP  171 (1081)
T ss_pred             hhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeec--c-cccCceeeecccCc
Confidence            4666654433 3445568999999999999 4568899999999999999886532211111  1 45667899987555


Q ss_pred             eEEEEecCCeEEEEeCCCCc-eeeEEecccccceeEEEEECC-CCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeee
Q 040370           79 MYVTASKDGAIRLWDGVSAN-CVRSIVGAHGTAEATSANFTK-DQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLR  156 (228)
Q Consensus        79 ~l~~~~~dg~v~iwd~~~~~-~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~  156 (228)
                      .+.+.+....|.+||.+.+. ++..++.+  ...++.++|+. .-..+.+++.|++|+.||............ .....+
T Consensus       172 ~vlasshg~~i~vwd~r~gs~pl~s~K~~--vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~v-tt~~pi  248 (1081)
T KOG0309|consen  172 NVLASSHGNDIFVWDLRKGSTPLCSLKGH--VSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTV-TTNFPI  248 (1081)
T ss_pred             chhhhccCCceEEEeccCCCcceEEeccc--ceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceec-cccCcc
Confidence            56666677889999999875 44555553  77888888876 334688999999999999876433222111 123344


Q ss_pred             eEEEECCCCcE--EEEeeCCCCeEEEEEc---------CCc-ceeEEeecCCCCCcEEEEeCCCC----------cEEEE
Q 040370          157 FQAVFNDTEEF--VLSIDEPSNEIVIWDA---------LTA-EKVAKWSSNHIGAPRWIEHSPAE----------AAFIT  214 (228)
Q Consensus       157 ~~~~~~~~~~~--~~~~~~~d~~i~i~d~---------~~~-~~~~~~~~~~~~~v~~~~~~~~~----------~~l~s  214 (228)
                      ....+-|-+.-  +.-.-+ +..+.+++.         .++ +++..+ .+|...|....|-..+          -.|+|
T Consensus       249 w~~r~~Pfg~g~~~mp~~G-~n~v~~~~c~n~d~e~n~~~~~~pVh~F-~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVT  326 (1081)
T KOG0309|consen  249 WRGRYLPFGEGYCIMPMVG-GNMVPQLRCENSDLEWNVFDLNTPVHTF-VGHDDVVLEFLWRKRKECDGDYDSRDFQLVT  326 (1081)
T ss_pred             eeccccccCceeEeccccC-CeeeeeccccchhhhhccccCCcceeee-cCcchHHHHHhhhhcccccCCCCccceeEEE
Confidence            45555554432  221112 234444433         332 355666 7999988777664422          27999


Q ss_pred             ecCCCCEEEeee
Q 040370          215 CGTDRSVRFWKE  226 (228)
Q Consensus       215 ~~~dg~i~vwd~  226 (228)
                      -+.|..+++|-+
T Consensus       327 WSkD~~lrlWpI  338 (1081)
T KOG0309|consen  327 WSKDQTLRLWPI  338 (1081)
T ss_pred             eecCCceEeeec
Confidence            999999999975

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.35  E-value=1.1e-09  Score=80.88  Aligned_cols=175  Identities=10%  Similarity=0.061  Sum_probs=130.6

Q ss_pred             EeC-CCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCC-eEEEEeCCCCceeeEEe
Q 040370           27 FHP-SGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDG-AIRLWDGVSANCVRSIV  104 (228)
Q Consensus        27 ~~~-~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-~v~iwd~~~~~~~~~~~  104 (228)
                      |++ +|++++..+. |...|.+...+-.++.-.      .+.|.-..+..+++-++.|..|| .+-|+|.++++..+...
T Consensus       327 fa~~~Gd~ia~VSR-GkaFi~~~~~~~~iqv~~------~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~  399 (668)
T COG4946         327 FAVVNGDYIALVSR-GKAFIMRPWDGYSIQVGK------KGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEK  399 (668)
T ss_pred             hccCCCcEEEEEec-CcEEEECCCCCeeEEcCC------CCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeC
Confidence            444 6788887775 667777766655433222      56688888888888899999999 89999998877555544


Q ss_pred             cccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeC---CCCeEEEE
Q 040370          105 GAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDE---PSNEIVIW  181 (228)
Q Consensus       105 ~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~d~~i~i~  181 (228)
                      .   -+.|.++..+++|++++.+.....+.+.|+.+++....-+  .....+....|+|++++++-+--   --..|+++
T Consensus       400 ~---lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idk--S~~~lItdf~~~~nsr~iAYafP~gy~tq~Ikly  474 (668)
T COG4946         400 D---LGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDK--SEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLY  474 (668)
T ss_pred             C---ccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecc--cccceeEEEEEcCCceeEEEecCcceeeeeEEEE
Confidence            3   5689999999999999999999999999999987543332  26778899999999999887533   12579999


Q ss_pred             EcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEe
Q 040370          182 DALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITC  215 (228)
Q Consensus       182 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~  215 (228)
                      |+.+++.....  ...+.=.+-+|.|++++|.--
T Consensus       475 dm~~~Kiy~vT--T~ta~DfsPaFD~d~ryLYfL  506 (668)
T COG4946         475 DMDGGKIYDVT--TPTAYDFSPAFDPDGRYLYFL  506 (668)
T ss_pred             ecCCCeEEEec--CCcccccCcccCCCCcEEEEE
Confidence            99888766554  222333456788999877643

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=99.34  E-value=4e-11  Score=86.10  Aligned_cols=160  Identities=13%  Similarity=0.197  Sum_probs=106.2

Q ss_pred             eEEEEEeCCCCEEEEecCCCeEEEEEcccceE----EeeeccceeeeccceeeEEeCCCCCeEEEE---ecCCeEEEEeC
Q 040370           22 VRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQC----YLSANVPEISVNGAINQVRYSSTGGMYVTA---SKDGAIRLWDG   94 (228)
Q Consensus        22 v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~----~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~---~~dg~v~iwd~   94 (228)
                      ...+..+|+++++|++..+....+++......    ......     ...-+.+.|..+......+   +....+.+|..
T Consensus        65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v-----~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~  139 (390)
T KOG3914|consen   65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCV-----PKRPTAISFIREDTSVLVADKAGDVYSFDILSA  139 (390)
T ss_pred             ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeec-----ccCcceeeeeeccceEEEEeecCCceeeeeecc
Confidence            44456678899999998888877777665332    111111     2233445554444444443   44455666665


Q ss_pred             CCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCC
Q 040370           95 VSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEP  174 (228)
Q Consensus        95 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (228)
                      ..+... .+.+|  -..+..++++||+++++++..|..|++-.......+..+-. .|...+..++.-++.. ++++++ 
T Consensus       140 ~~~~~~-~~lGh--vSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~Iesfcl-GH~eFVS~isl~~~~~-LlS~sG-  213 (390)
T KOG3914|consen  140 DSGRCE-PILGH--VSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCL-GHKEFVSTISLTDNYL-LLSGSG-  213 (390)
T ss_pred             cccCcc-hhhhh--hhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhcc-ccHhheeeeeeccCce-eeecCC-
Confidence            553333 23343  77899999999999999999999999988776555555532 2677777777766544 555555 


Q ss_pred             CCeEEEEEcCCcceeEEe
Q 040370          175 SNEIVIWDALTAEKVAKW  192 (228)
Q Consensus       175 d~~i~i~d~~~~~~~~~~  192 (228)
                      |+++++||+++|+.+.++
T Consensus       214 D~tlr~Wd~~sgk~L~t~  231 (390)
T KOG3914|consen  214 DKTLRLWDITSGKLLDTC  231 (390)
T ss_pred             CCcEEEEecccCCccccc
Confidence            899999999999987655

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.33  E-value=3.5e-10  Score=84.66  Aligned_cols=150  Identities=15%  Similarity=0.244  Sum_probs=109.9

Q ss_pred             CeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEe--cCCeEEEEeCCCCceeeEEecccccceeEEEEEC
Q 040370           41 PIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTAS--KDGAIRLWDGVSANCVRSIVGAHGTAEATSANFT  118 (228)
Q Consensus        41 ~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~  118 (228)
                      .++++.+++.......+..     .++|+++.|+|+++.|+++.  .--.+.|+|++ +..+..+.    .++=+++-|+
T Consensus       251 q~Lyll~t~g~s~~V~L~k-----~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df~----egpRN~~~fn  320 (566)
T KOG2315|consen  251 QTLYLLATQGESVSVPLLK-----EGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDFP----EGPRNTAFFN  320 (566)
T ss_pred             ceEEEEEecCceEEEecCC-----CCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeCC----CCCccceEEC
Confidence            4678888774343333322     78999999999998777654  45679999975 66666554    4456789999


Q ss_pred             CCCCEEEEeeCC---CeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCC-----CCeEEEEEcCCcceeE
Q 040370          119 KDQRFVLSCGKD---STVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEP-----SNEIVIWDALTAEKVA  190 (228)
Q Consensus       119 ~~~~~l~~~~~d---~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~i~i~d~~~~~~~~  190 (228)
                      |.|++++.++-+   |.+-+||+.+.+++..+..    ...+.+.|+|+|++++++...     |+.++||+. +|..+.
T Consensus       321 p~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a----~~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhy-tG~~l~  395 (566)
T KOG2315|consen  321 PHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKA----ANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHY-TGSLLH  395 (566)
T ss_pred             CCCCEEEEeecCCCCCceEEEeccchhhcccccc----CCceEEEEcCCCcEEEEEeccccEEecCCeEEEEe-cCceee
Confidence            999999988865   6899999999888877753    334678899999999987654     789999997 566555


Q ss_pred             EeecCCCCCcEEEEeCC
Q 040370          191 KWSSNHIGAPRWIEHSP  207 (228)
Q Consensus       191 ~~~~~~~~~v~~~~~~~  207 (228)
                      ..  ...+....+.|-|
T Consensus       396 ~~--~f~sEL~qv~W~P  410 (566)
T KOG2315|consen  396 EK--MFKSELLQVEWRP  410 (566)
T ss_pred             hh--hhhHhHhheeeee
Confidence            43  1222567777766

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.32  E-value=9.4e-12  Score=91.44  Aligned_cols=163  Identities=18%  Similarity=0.230  Sum_probs=129.9

Q ss_pred             eccceeeEEeCCCCCeEEEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECC--CCCEEEEeeCCCeEEEEEccC-
Q 040370           64 VNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTK--DQRFVLSCGKDSTVKLWEVSS-  140 (228)
Q Consensus        64 ~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~~d~~i~~wd~~~-  140 (228)
                      |.+.|+.+.|+..|..+++|+.|..|.+||...++....+...| ...|.-..|-|  +...+++++.||.+++=.+.. 
T Consensus       141 H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH-~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t  219 (559)
T KOG1334|consen  141 HKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGH-CNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILET  219 (559)
T ss_pred             CCCccceeeecccCceeeccCccceEEeehhhccCccccccccc-ccchhhhhccCCCCCcCceeccccCceeeeeeccc
Confidence            48899999999999999999999999999999998888777655 55666666877  446799999999999977654 


Q ss_pred             CeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEee--cCCCC---CcEEEEeCCCC-cEEEE
Q 040370          141 GRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWS--SNHIG---APRWIEHSPAE-AAFIT  214 (228)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~--~~~~~---~v~~~~~~~~~-~~l~s  214 (228)
                      +....+.....|...+..++.-|+..+-+.+++.|+.+.-+|++.+.+...+.  ..+..   ....++..|.. .++++
T Consensus       220 ~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faV  299 (559)
T KOG1334|consen  220 GYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAV  299 (559)
T ss_pred             cceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCcccccc
Confidence            33333444455788888999999999888888889999999999876644432  23444   57788999954 48999


Q ss_pred             ecCCCCEEEeeec
Q 040370          215 CGTDRSVRFWKEI  227 (228)
Q Consensus       215 ~~~dg~i~vwd~~  227 (228)
                      ++.|..+++||.+
T Consensus       300 gG~dqf~RvYD~R  312 (559)
T KOG1334|consen  300 GGSDQFARVYDQR  312 (559)
T ss_pred             CChhhhhhhhccc
Confidence            9999999999864

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=99.29  E-value=1.2e-10  Score=83.76  Aligned_cols=153  Identities=16%  Similarity=0.242  Sum_probs=107.8

Q ss_pred             ceeeEEeCCCCCeEEEEecCCeEEEEeCCCCce----eeEEecccccceeEEEEECCCCCEEEEeeCC---CeEEEEEcc
Q 040370           67 AINQVRYSSTGGMYVTASKDGAIRLWDGVSANC----VRSIVGAHGTAEATSANFTKDQRFVLSCGKD---STVKLWEVS  139 (228)
Q Consensus        67 ~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~----~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---~~i~~wd~~  139 (228)
                      ....+..+|.+++++.+..+....+++......    ......   ...-+++.|..+......+..-   ..+.+|...
T Consensus        64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v---~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~  140 (390)
T KOG3914|consen   64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCV---PKRPTAISFIREDTSVLVADKAGDVYSFDILSAD  140 (390)
T ss_pred             cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeec---ccCcceeeeeeccceEEEEeecCCceeeeeeccc
Confidence            345566788899999888888877777664432    222222   2233445555544444444444   445555544


Q ss_pred             CCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCC
Q 040370          140 SGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDR  219 (228)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg  219 (228)
                      .+..... .+  |-..+..++++|++++++++.. |..|++-.......+..+..+|..-|..++.-++ ..|+++|.|+
T Consensus       141 ~~~~~~~-lG--hvSml~dVavS~D~~~IitaDR-DEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~sGD~  215 (390)
T KOG3914|consen  141 SGRCEPI-LG--HVSMLLDVAVSPDDQFIITADR-DEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSGSGDK  215 (390)
T ss_pred             ccCcchh-hh--hhhhhheeeecCCCCEEEEecC-CceEEEEecCcccchhhhccccHhheeeeeeccC-ceeeecCCCC
Confidence            4333322 23  7788999999999999998665 8999999988888888887899999999999765 4599999999


Q ss_pred             CEEEeeec
Q 040370          220 SVRFWKEI  227 (228)
Q Consensus       220 ~i~vwd~~  227 (228)
                      ++++||+.
T Consensus       216 tlr~Wd~~  223 (390)
T KOG3914|consen  216 TLRLWDIT  223 (390)
T ss_pred             cEEEEecc
Confidence            99999974

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.29  E-value=3.3e-11  Score=93.12  Aligned_cols=211  Identities=16%  Similarity=0.252  Sum_probs=148.3

Q ss_pred             ccceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccce-EEeeeccceeeeccceeeEEeCCCC--CeEEEEe
Q 040370            8 TAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQ-CYLSANVPEISVNGAINQVRYSSTG--GMYVTAS   84 (228)
Q Consensus         8 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~--~~l~~~~   84 (228)
                      +..+.+.+ .-..++.++..+|.|+-+|.++.-|. .+.|+...- +..-+....   .-.|-.+.|+|..  .+-++..
T Consensus        14 tf~kslsl-~v~~~~~a~si~p~grdi~lAsr~gl-~i~dld~p~~ppr~l~h~t---pw~vad~qws~h~a~~~wiVst   88 (1081)
T KOG0309|consen   14 TFGKSLSL-KVDGGFNAVSINPSGRDIVLASRQGL-YIIDLDDPFTPPRWLHHIT---PWQVADVQWSPHPAKPYWIVST   88 (1081)
T ss_pred             ccCceeEE-EecCcccceeeccccchhhhhhhcCe-EEEeccCCCCCceeeeccC---cchhcceecccCCCCceeEEec
Confidence            33344443 34678899999999999999998774 577776532 111111100   2346677888753  3444444


Q ss_pred             cCCeEEEEeCCCC-ceeeEEecccccceeEEEEECCC-CCEEEEeeCCCeEEEEEccCCeeE-EEEecceeeeeeeEEEE
Q 040370           85 KDGAIRLWDGVSA-NCVRSIVGAHGTAEATSANFTKD-QRFVLSCGKDSTVKLWEVSSGRLV-KQYLGATHTQLRFQAVF  161 (228)
Q Consensus        85 ~dg~v~iwd~~~~-~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~d~~i~~wd~~~~~~~-~~~~~~~~~~~~~~~~~  161 (228)
                      ....-.+|++... .....+..|.+...++.+.|+|. ...+++++.|-.+..||+++.... ..+..  -......+.|
T Consensus        89 s~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~--w~s~asqVkw  166 (1081)
T KOG0309|consen   89 SNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSS--WRSAASQVKW  166 (1081)
T ss_pred             CcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeec--ccccCceeee
Confidence            5566778987643 33445556666899999999994 467899999999999999986543 33322  3344567788


Q ss_pred             CCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCC-CCcEEEEecCCCCEEEeee
Q 040370          162 NDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSP-AEAAFITCGTDRSVRFWKE  226 (228)
Q Consensus       162 ~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~vwd~  226 (228)
                      +-....++++.. .+.|++||.+.|..+.....+|...|+.++|.. ....+.+++.||+|++||-
T Consensus       167 nyk~p~vlassh-g~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y  231 (1081)
T KOG0309|consen  167 NYKDPNVLASSH-GNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDY  231 (1081)
T ss_pred             cccCcchhhhcc-CCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecc
Confidence            877777777555 488999999998877666688999999999976 4557899999999999984

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=99.29  E-value=2.3e-10  Score=90.33  Aligned_cols=183  Identities=15%  Similarity=0.172  Sum_probs=129.6

Q ss_pred             CCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCCCceeeEEeccccc
Q 040370           30 SGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGT  109 (228)
Q Consensus        30 ~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~  109 (228)
                      ++..++.|+-...+..+|+.+.+........    .+.|.-++.  +++.+++|...|+|.+-|.++.+.+.++..|  .
T Consensus       146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~----a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aH--s  217 (1118)
T KOG1275|consen  146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVS----ASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFDAH--S  217 (1118)
T ss_pred             CCcceeecchhhheeeeecccceeeeeeecc----CCceEEEEe--cCcEEEeecccceEEeecCCcCceeeeeecc--c
Confidence            3455666666667778888887765544432    334555555  5789999999999999999999999999987  6


Q ss_pred             ceeEEEEECCCCCEEEEeeC---------CCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCCeEEE
Q 040370          110 AEATSANFTKDQRFVLSCGK---------DSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVI  180 (228)
Q Consensus       110 ~~i~~~~~~~~~~~l~~~~~---------d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i  180 (228)
                      +.+..+..  .|+.|++++.         |.-|+|||+|..+.+.-+.-+..+   .-+.|.|.-...++..+..|...+
T Consensus       218 ~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P---~flrf~Psl~t~~~V~S~sGq~q~  292 (1118)
T KOG1275|consen  218 GSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP---QFLRFHPSLTTRLAVTSQSGQFQF  292 (1118)
T ss_pred             cceeeeec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc---hhhhhcccccceEEEEecccceee
Confidence            67766544  5889999884         567899999988776555432222   345666765444443444599999


Q ss_pred             EE---cCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEee
Q 040370          181 WD---ALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWK  225 (228)
Q Consensus       181 ~d---~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd  225 (228)
                      -|   +.+...-..........+.++.++++++.++.|..+|.|.+|.
T Consensus       293 vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  293 VDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA  340 (1118)
T ss_pred             ccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence            98   3333222222233445599999999999999999999999995

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=99.28  E-value=1e-11  Score=87.63  Aligned_cols=132  Identities=15%  Similarity=0.263  Sum_probs=103.9

Q ss_pred             cCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCC-CCCeEEEEecCCeEEEEeCCC
Q 040370           18 DTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSS-TGGMYVTASKDGAIRLWDGVS   96 (228)
Q Consensus        18 ~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~v~iwd~~~   96 (228)
                      ..+.|.++.|...++++..|+.+|.|..+|++....-.........|.+.|+++..-. ++++|.+.+.+|.|++||++.
T Consensus       251 sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~  330 (425)
T KOG2695|consen  251 SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRA  330 (425)
T ss_pred             cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhhhhccccceEeeccCcCceeEeeehh
Confidence            4678899999988999999999999999999875321122222333488899988776 788999999999999999987


Q ss_pred             Cce---eeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEec
Q 040370           97 ANC---VRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLG  149 (228)
Q Consensus        97 ~~~---~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~  149 (228)
                      -+.   +....+|.+...-.-+...+....++++++|-..++|.++.+..+.++.-
T Consensus       331 ~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf  386 (425)
T KOG2695|consen  331 TKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPF  386 (425)
T ss_pred             hhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeeccCC
Confidence            666   77777775444444455677778899999999999999999998887753

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=99.27  E-value=1.7e-08  Score=71.94  Aligned_cols=183  Identities=11%  Similarity=0.128  Sum_probs=124.7

Q ss_pred             EEEeCCCCEEEEec-----CCCeEEEEEcc-cceEEeeeccceeeeccceeeEEeCCCCCeEEEEe--------------
Q 040370           25 VSFHPSGDFLLAGT-----DHPIAHLYDVN-TFQCYLSANVPEISVNGAINQVRYSSTGGMYVTAS--------------   84 (228)
Q Consensus        25 ~~~~~~~~~l~~~~-----~d~~i~vw~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--------------   84 (228)
                      -.|+|||++|++.-     ..|.|-|||.. ..+.+..+...    .-....+.+.|+|+.|+.+.              
T Consensus        56 g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~----GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kL  131 (305)
T PF07433_consen   56 GVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSH----GIGPHELLLMPDGETLVVANGGIETHPDSGRAKL  131 (305)
T ss_pred             EEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCC----CcChhhEEEcCCCCEEEEEcCCCccCcccCceec
Confidence            57999999999864     35899999999 44444444332    33456788999998777763              


Q ss_pred             ----cCCeEEEEeCCCCceeeEEec--ccccceeEEEEECCCCCEEEEeeCCC-------eEEEEEccCCeeEEEEecc-
Q 040370           85 ----KDGAIRLWDGVSANCVRSIVG--AHGTAEATSANFTKDQRFVLSCGKDS-------TVKLWEVSSGRLVKQYLGA-  150 (228)
Q Consensus        85 ----~dg~v~iwd~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~l~~~~~d~-------~i~~wd~~~~~~~~~~~~~-  150 (228)
                          .+-++...|..+|+.+.+...  ..+..++..+++.++|..++..-..|       -+.+++.  ++.+..+... 
T Consensus       132 Nl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~--g~~~~~~~~p~  209 (305)
T PF07433_consen  132 NLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRR--GGALRLLPAPE  209 (305)
T ss_pred             ChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcC--CCcceeccCCh
Confidence                234466667788887776544  34477899999999987655543333       2334433  3323333221 


Q ss_pred             ----eeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecC
Q 040370          151 ----THTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGT  217 (228)
Q Consensus       151 ----~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~  217 (228)
                          .-..++-++++++++..+++++-..+.+.+||..+++.+...   ....+..++-.+++ +++|.+.
T Consensus       210 ~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~---~l~D~cGva~~~~~-f~~ssG~  276 (305)
T PF07433_consen  210 EQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSV---PLPDACGVAPTDDG-FLVSSGQ  276 (305)
T ss_pred             HHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeecc---ccCceeeeeecCCc-eEEeCCC
Confidence                134677889999999999998888899999999999988765   23456677776666 6666554

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=99.27  E-value=1e-07  Score=67.80  Aligned_cols=190  Identities=10%  Similarity=0.049  Sum_probs=126.0

Q ss_pred             EEEEeC-CCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeC-CCCCeEEEEecCCeEEEEeCCCCceee
Q 040370           24 SVSFHP-SGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYS-STGGMYVTASKDGAIRLWDGVSANCVR  101 (228)
Q Consensus        24 ~~~~~~-~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~l~~~~~dg~v~iwd~~~~~~~~  101 (228)
                      ++.|.+ ++.++++-...+.|..|+..+++... ..      ......+++. +++ .++.+..++ +.++|+.+++...
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~------~~~~~G~~~~~~~g-~l~v~~~~~-~~~~d~~~g~~~~   74 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-ID------LPGPNGMAFDRPDG-RLYVADSGG-IAVVDPDTGKVTV   74 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EE------SSSEEEEEEECTTS-EEEEEETTC-EEEEETTTTEEEE
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-Ee------cCCCceEEEEccCC-EEEEEEcCc-eEEEecCCCcEEE
Confidence            578888 67777777788999999998876543 11      1225667777 565 455555544 5555988886544


Q ss_pred             EEec--c-cccceeEEEEECCCCCEEEEeeCC--------CeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEE
Q 040370          102 SIVG--A-HGTAEATSANFTKDQRFVLSCGKD--------STVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLS  170 (228)
Q Consensus       102 ~~~~--~-~~~~~i~~~~~~~~~~~l~~~~~d--------~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (228)
                      ....  . ......+.+++.|+|+..++....        |.|..++.. ++......   .-.....++|+|+++.+++
T Consensus        75 ~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~---~~~~pNGi~~s~dg~~lyv  150 (246)
T PF08450_consen   75 LADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD---GLGFPNGIAFSPDGKTLYV  150 (246)
T ss_dssp             EEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE---EESSEEEEEEETTSSEEEE
T ss_pred             EeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec---CcccccceEECCcchheee
Confidence            4433  1 135678899999999977766543        557777776 44433332   3444568999999999888


Q ss_pred             eeCCCCeEEEEEcCCcce----eEEee--cCCCCCcEEEEeCCCCcEEEEecCCCCEEEeee
Q 040370          171 IDEPSNEIVIWDALTAEK----VAKWS--SNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKE  226 (228)
Q Consensus       171 ~~~~d~~i~i~d~~~~~~----~~~~~--~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~  226 (228)
                      +.+..+.|..+++.....    ...+.  ....+....+++..+|++.++.-..+.|.+++.
T Consensus       151 ~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p  212 (246)
T PF08450_consen  151 ADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDP  212 (246)
T ss_dssp             EETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEET
T ss_pred             cccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECC
Confidence            887789999999864322    11121  122234788999999998888777888888874

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=99.23  E-value=1.5e-07  Score=67.06  Aligned_cols=185  Identities=14%  Similarity=0.166  Sum_probs=116.6

Q ss_pred             eEEEEEe-CCCCEEEEecCCCeEEEEEcccceEEeeeccc-eeeeccceeeEEeCCCCCeEEEEecC--------CeEEE
Q 040370           22 VRSVSFH-PSGDFLLAGTDHPIAHLYDVNTFQCYLSANVP-EISVNGAINQVRYSSTGGMYVTASKD--------GAIRL   91 (228)
Q Consensus        22 v~~~~~~-~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~d--------g~v~i   91 (228)
                      ...+++. +++ .|+.+...+ +.++|..+++........ ........+.+++.|+|++.++....        |.|..
T Consensus        42 ~~G~~~~~~~g-~l~v~~~~~-~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~  119 (246)
T PF08450_consen   42 PNGMAFDRPDG-RLYVADSGG-IAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYR  119 (246)
T ss_dssp             EEEEEEECTTS-EEEEEETTC-EEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEE
T ss_pred             CceEEEEccCC-EEEEEEcCc-eEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEE
Confidence            6777787 565 455555544 456699888654444432 11125678999999999977776543        56777


Q ss_pred             EeCCCCceeeEEecccccceeEEEEECCCCCEEE-EeeCCCeEEEEEccCCee----EEEEe-cceeeeeeeEEEECCCC
Q 040370           92 WDGVSANCVRSIVGAHGTAEATSANFTKDQRFVL-SCGKDSTVKLWEVSSGRL----VKQYL-GATHTQLRFQAVFNDTE  165 (228)
Q Consensus        92 wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~d~~i~~wd~~~~~~----~~~~~-~~~~~~~~~~~~~~~~~  165 (228)
                      ++.. ++.......   -...+.++|+|+++.|+ +-+..+.|..+++.....    ...+. ........-.+++..++
T Consensus       120 ~~~~-~~~~~~~~~---~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G  195 (246)
T PF08450_consen  120 IDPD-GKVTVVADG---LGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDG  195 (246)
T ss_dssp             EETT-SEEEEEEEE---ESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS
T ss_pred             ECCC-CeEEEEecC---cccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCC
Confidence            7776 554433333   34568999999998765 566778899999864221    12221 11112235678888888


Q ss_pred             cEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEe-CCCCcE-EEEe
Q 040370          166 EFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEH-SPAEAA-FITC  215 (228)
Q Consensus       166 ~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~-l~s~  215 (228)
                      ...++.-. .+.|.++|.. |+.+..+... ...+++++| -++.+. ++|.
T Consensus       196 ~l~va~~~-~~~I~~~~p~-G~~~~~i~~p-~~~~t~~~fgg~~~~~L~vTt  244 (246)
T PF08450_consen  196 NLWVADWG-GGRIVVFDPD-GKLLREIELP-VPRPTNCAFGGPDGKTLYVTT  244 (246)
T ss_dssp             -EEEEEET-TTEEEEEETT-SCEEEEEE-S-SSSEEEEEEESTTSSEEEEEE
T ss_pred             CEEEEEcC-CCEEEEECCC-ccEEEEEcCC-CCCEEEEEEECCCCCEEEEEe
Confidence            87666554 5999999976 8888777544 458999999 455444 4443

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.22  E-value=4.3e-08  Score=82.61  Aligned_cols=201  Identities=11%  Similarity=0.123  Sum_probs=130.6

Q ss_pred             EEEEEeCC-CCEEEEecCCCeEEEEEcccceEEeeecc-ce-e--------eeccceeeEEeCCCCCeEEEEe-cCCeEE
Q 040370           23 RSVSFHPS-GDFLLAGTDHPIAHLYDVNTFQCYLSANV-PE-I--------SVNGAINQVRYSSTGGMYVTAS-KDGAIR   90 (228)
Q Consensus        23 ~~~~~~~~-~~~l~~~~~d~~i~vw~~~~~~~~~~~~~-~~-~--------~~~~~i~~~~~~~~~~~l~~~~-~dg~v~   90 (228)
                      ..+++++. +..+++-+.++.|+++|..... ...... .. +        ..-.....+++.++++.|+.+. .++.|+
T Consensus       571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~-i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir  649 (1057)
T PLN02919        571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGNF-IVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALR  649 (1057)
T ss_pred             ceEEEECCCCeEEEEECCCCeEEEEeCCCCE-EEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEE
Confidence            46788874 5667777788999999986543 222211 00 0        0012357899999888666554 457799


Q ss_pred             EEeCCCCceeeEEeccc-------c--------cceeEEEEECC-CCCEEEEeeCCCeEEEEEccCCeeEEEEecce---
Q 040370           91 LWDGVSANCVRSIVGAH-------G--------TAEATSANFTK-DQRFVLSCGKDSTVKLWEVSSGRLVKQYLGAT---  151 (228)
Q Consensus        91 iwd~~~~~~~~~~~~~~-------~--------~~~i~~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~---  151 (228)
                      ++|..++. +..+....       .        -.....++++| ++..+++.+.++.|++||..++... .+.+..   
T Consensus       650 ~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~~  727 (1057)
T PLN02919        650 EIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYER  727 (1057)
T ss_pred             EEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCccc
Confidence            99987654 33332100       0        01235789999 5666677778899999999876542 221110   


Q ss_pred             ----------eeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEee-----------cC---------CCCCcE
Q 040370          152 ----------HTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWS-----------SN---------HIGAPR  201 (228)
Q Consensus       152 ----------~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~-----------~~---------~~~~v~  201 (228)
                                .......++++|++..++++...++.|++||+.++.......           .+         ......
T Consensus       728 ~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~  807 (1057)
T PLN02919        728 NLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPL  807 (1057)
T ss_pred             cCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCc
Confidence                      112345688999999888888878999999998765321110           00         112346


Q ss_pred             EEEeCCCCcEEEEecCCCCEEEeee
Q 040370          202 WIEHSPAEAAFITCGTDRSVRFWKE  226 (228)
Q Consensus       202 ~~~~~~~~~~l~s~~~dg~i~vwd~  226 (228)
                      .++++++|+++++-..+++|++||.
T Consensus       808 Gvavd~dG~LYVADs~N~rIrviD~  832 (1057)
T PLN02919        808 GVLCAKDGQIYVADSYNHKIKKLDP  832 (1057)
T ss_pred             eeeEeCCCcEEEEECCCCEEEEEEC
Confidence            8999999999999999999999986

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.20  E-value=5e-08  Score=71.81  Aligned_cols=103  Identities=15%  Similarity=0.073  Sum_probs=80.5

Q ss_pred             CeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEec----------CCeEEEEeCCCCceeeEEecccc--
Q 040370           41 PIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASK----------DGAIRLWDGVSANCVRSIVGAHG--  108 (228)
Q Consensus        41 ~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----------dg~v~iwd~~~~~~~~~~~~~~~--  108 (228)
                      +.|.+.|..+++.+.......     .-..+ ++|+++.++.+..          +..|.+||..+.+.+..+.....  
T Consensus        27 ~~v~ViD~~~~~v~g~i~~G~-----~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~  100 (352)
T TIGR02658        27 TQVYTIDGEAGRVLGMTDGGF-----LPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPR  100 (352)
T ss_pred             ceEEEEECCCCEEEEEEEccC-----CCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCch
Confidence            899999999998877766532     22334 9999998877665          78999999999999988875321  


Q ss_pred             ---cceeEEEEECCCCCEEEEee-C-CCeEEEEEccCCeeEEEEec
Q 040370          109 ---TAEATSANFTKDQRFVLSCG-K-DSTVKLWEVSSGRLVKQYLG  149 (228)
Q Consensus       109 ---~~~i~~~~~~~~~~~l~~~~-~-d~~i~~wd~~~~~~~~~~~~  149 (228)
                         ......++++|||++|+... . +..|.+.|+.+++.+..+..
T Consensus       101 ~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~v  146 (352)
T TIGR02658       101 FLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDV  146 (352)
T ss_pred             hhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeC
Confidence               12234788999999988766 3 68999999999999888764

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.20  E-value=2.9e-11  Score=90.83  Aligned_cols=161  Identities=16%  Similarity=0.222  Sum_probs=117.0

Q ss_pred             ccceeeEEeCCCCCeEEEEecCCeEEEEeCCCC-----ceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEcc
Q 040370           65 NGAINQVRYSSTGGMYVTASKDGAIRLWDGVSA-----NCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVS  139 (228)
Q Consensus        65 ~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~-----~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~  139 (228)
                      ...|..++--.+.+-+++++.|.+|++|.++..     .....+....|+.+|.++.|-.+.++++++  ||.|.+||.-
T Consensus       735 ~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~giHlWDPF  812 (1034)
T KOG4190|consen  735 QEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGGIHLWDPF  812 (1034)
T ss_pred             HHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCcceeeccc
Confidence            677777776667788999999999999998742     112223333348899999999998888776  7889999988


Q ss_pred             CCeeEEEEecceeeeeeeEEEECC--CCcEEEEeeCCCCeEEEEEcCCcceeEEee----cCCCCCcEEEEeCCCCcEEE
Q 040370          140 SGRLVKQYLGATHTQLRFQAVFND--TEEFVLSIDEPSNEIVIWDALTAEKVAKWS----SNHIGAPRWIEHSPAEAAFI  213 (228)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~l~  213 (228)
                      -++++..+...........+..-+  +...++++++...+++++|.+..+-...+.    .+.+.-+.+++..+.|+.++
T Consensus       813 igr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lA  892 (1034)
T KOG4190|consen  813 IGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLA  892 (1034)
T ss_pred             ccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhh
Confidence            777766554333333333333323  455666666777999999999988766653    23446688999999999999


Q ss_pred             EecCCCCEEEeeec
Q 040370          214 TCGTDRSVRFWKEI  227 (228)
Q Consensus       214 s~~~dg~i~vwd~~  227 (228)
                      .+-.+|+|.+-|.+
T Consensus       893 a~LSnGci~~LDaR  906 (1034)
T KOG4190|consen  893 AALSNGCIAILDAR  906 (1034)
T ss_pred             HHhcCCcEEEEecC
Confidence            99899998887754

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.18  E-value=2.9e-08  Score=82.26  Aligned_cols=201  Identities=10%  Similarity=0.167  Sum_probs=130.0

Q ss_pred             cCcceEEEEEeCCCCEEEEecC------CCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEec---CCe
Q 040370           18 DTHNVRSVSFHPSGDFLLAGTD------HPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASK---DGA   88 (228)
Q Consensus        18 ~~~~v~~~~~~~~~~~l~~~~~------d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---dg~   88 (228)
                      +...-..++|-.||+++|+.+-      -..++||+-+ |.........    .+--.+++|.|.|+++|+...   ...
T Consensus       208 ~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v----~gLe~~l~WrPsG~lIA~~q~~~~~~~  282 (928)
T PF04762_consen  208 WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPV----DGLEGALSWRPSGNLIASSQRLPDRHD  282 (928)
T ss_pred             cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccC----CCccCCccCCCCCCEEEEEEEcCCCcE
Confidence            4456778999999999998763      2589999976 5543332211    333457899999999888764   345


Q ss_pred             EEEEeCCCCceeeEEecc--cccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeE--EEEecceeeeeeeEEEECCC
Q 040370           89 IRLWDGVSANCVRSIVGA--HGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLV--KQYLGATHTQLRFQAVFNDT  164 (228)
Q Consensus        89 v~iwd~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~--~~~~~~~~~~~~~~~~~~~~  164 (228)
                      |.+|. ++|-....+...  .....|..+.|++++..|+....|. |.+|-..+-..-  +.+... .......+.|+|.
T Consensus       283 VvFfE-rNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~-~~~~~~~~~Wdpe  359 (928)
T PF04762_consen  283 VVFFE-RNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFS-SSESVNFVKWDPE  359 (928)
T ss_pred             EEEEe-cCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEcc-CCCCCCceEECCC
Confidence            77777 556555555443  2366889999999999999987665 999988775432  222211 1222334778886


Q ss_pred             CcEEEEeeCCCCeEEEEEc----CCc----------------ceeE--------------EeecCCCCCcEEEEeCCCCc
Q 040370          165 EEFVLSIDEPSNEIVIWDA----LTA----------------EKVA--------------KWSSNHIGAPRWIEHSPAEA  210 (228)
Q Consensus       165 ~~~~~~~~~~d~~i~i~d~----~~~----------------~~~~--------------~~~~~~~~~v~~~~~~~~~~  210 (228)
                      ..+-+.....+|.+..++.    ..+                ..+.              ...-....+|.+++|++++.
T Consensus       360 ~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~  439 (928)
T PF04762_consen  360 KPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNS  439 (928)
T ss_pred             CCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCC
Confidence            6553333332355544432    111                0000              00113467899999999988


Q ss_pred             EEEEecCCCCEEEeee
Q 040370          211 AFITCGTDRSVRFWKE  226 (228)
Q Consensus       211 ~l~s~~~dg~i~vwd~  226 (228)
                      .+++-..||.+.+|..
T Consensus       440 ~~avl~~d~~l~~~~~  455 (928)
T PF04762_consen  440 RFAVLTSDGSLSIYEW  455 (928)
T ss_pred             eEEEEECCCCEEEEEe
Confidence            8999999999999984

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=99.18  E-value=1.4e-08  Score=69.91  Aligned_cols=180  Identities=9%  Similarity=-0.016  Sum_probs=122.1

Q ss_pred             EEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCCC-ceeeEEecccccce
Q 040370           33 FLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSA-NCVRSIVGAHGTAE  111 (228)
Q Consensus        33 ~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~-~~~~~~~~~~~~~~  111 (228)
                      .+..++.|.++++.+++.+........+    .-.+.++.++++++++++.+....|..|.+... +.+..+........
T Consensus       130 ~~~i~sndht~k~~~~~~~s~~~~~h~~----~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~  205 (344)
T KOG4532|consen  130 PLNIASNDHTGKTMVVSGDSNKFAVHNQ----NLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDH  205 (344)
T ss_pred             ceeeccCCcceeEEEEecCcccceeecc----ccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCC
Confidence            3556777888888887765432222211    123788999999999999999999999988753 33333233323445


Q ss_pred             eEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEE---ecceeeeeeeEEEECCCCc--EEEEeeCCCCeEEEEEcCCc
Q 040370          112 ATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQY---LGATHTQLRFQAVFNDTEE--FVLSIDEPSNEIVIWDALTA  186 (228)
Q Consensus       112 i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~--~~~~~~~~d~~i~i~d~~~~  186 (228)
                      -.+..|+.....+|++..||++.|||++....+...   ..+.|.+.+..+.|++.|.  .++.+-. -+.+.+-|+|++
T Consensus       206 gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEh-fs~~hv~D~R~~  284 (344)
T KOG4532|consen  206 GFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEH-FSRVHVVDTRNY  284 (344)
T ss_pred             ceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecC-cceEEEEEcccC
Confidence            577889999999999999999999999976544332   2233777888889997663  3444443 489999999998


Q ss_pred             ceeEEee------cCCCCC-cEEEEeCCCCcEEEEecC
Q 040370          187 EKVAKWS------SNHIGA-PRWIEHSPAEAAFITCGT  217 (228)
Q Consensus       187 ~~~~~~~------~~~~~~-v~~~~~~~~~~~l~s~~~  217 (228)
                      .....+.      ..|... +..-.|+.++.-+.+..+
T Consensus       285 ~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e  322 (344)
T KOG4532|consen  285 VNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNE  322 (344)
T ss_pred             ceeeEEecCccccccccccccccccccCCCcccccccc
Confidence            7655542      123333 667777776655554443

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.18  E-value=5.7e-09  Score=78.51  Aligned_cols=216  Identities=15%  Similarity=0.207  Sum_probs=133.4

Q ss_pred             CCcCCccccceeEEEeecCcceE-EEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCe
Q 040370            1 FFDFSKATAKRAFRVIQDTHNVR-SVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGM   79 (228)
Q Consensus         1 iwd~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~   79 (228)
                      |||+.++..++.+..+.....+. -..||.|++++|.-..+ .|.||+..+...+......    ...|....|+|.++.
T Consensus       286 IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~-sisIyEtpsf~lld~Kslk----i~gIr~FswsP~~~l  360 (698)
T KOG2314|consen  286 IWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGN-SISIYETPSFMLLDKKSLK----ISGIRDFSWSPTSNL  360 (698)
T ss_pred             EEEccccchhcceeccCCCccccceEEeccCCceeEEeccc-eEEEEecCceeeecccccC----CccccCcccCCCcce
Confidence            69999888888777764444433 46899999999977664 6889998775443322221    456777888888776


Q ss_pred             EEEEecC-----CeEEEEeCCCCceeeEE-------------------------------------------ec------
Q 040370           80 YVTASKD-----GAIRLWDGVSANCVRSI-------------------------------------------VG------  105 (228)
Q Consensus        80 l~~~~~d-----g~v~iwd~~~~~~~~~~-------------------------------------------~~------  105 (228)
                      ||--...     ..+.+-.+.+++.++..                                           ..      
T Consensus       361 lAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve  440 (698)
T KOG2314|consen  361 LAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVE  440 (698)
T ss_pred             EEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCce
Confidence            6543211     11222211111111100                                           00      


Q ss_pred             -ccccceeEEEEECCCCCEEEEeeC---CCeEEEEEccC-Ce---eEEEEecceeeeeeeEEEECCCCcEEEEeeC--CC
Q 040370          106 -AHGTAEATSANFTKDQRFVLSCGK---DSTVKLWEVSS-GR---LVKQYLGATHTQLRFQAVFNDTEEFVLSIDE--PS  175 (228)
Q Consensus       106 -~~~~~~i~~~~~~~~~~~l~~~~~---d~~i~~wd~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~d  175 (228)
                       -.-...|...+|.|.|+.+++-+.   ..++.+|.+++ ..   .+..+    .......+.|+|.|+++++++-  ..
T Consensus       441 ~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~----dk~~~N~vfwsPkG~fvvva~l~s~~  516 (698)
T KOG2314|consen  441 VVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKEL----DKKFANTVFWSPKGRFVVVAALVSRR  516 (698)
T ss_pred             eeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhh----cccccceEEEcCCCcEEEEEEecccc
Confidence             001446778899999987776543   34688898873 22   22222    2345678899999999887643  36


Q ss_pred             CeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecC------CCCEEEeee
Q 040370          176 NEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGT------DRSVRFWKE  226 (228)
Q Consensus       176 ~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~------dg~i~vwd~  226 (228)
                      |.+.++|+........-...| ...+.+.|.|.|+|++|++.      |..-++|+.
T Consensus       517 g~l~F~D~~~a~~k~~~~~eh-~~at~veWDPtGRYvvT~ss~wrhk~d~GYri~tf  572 (698)
T KOG2314|consen  517 GDLEFYDTDYADLKDTASPEH-FAATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTF  572 (698)
T ss_pred             cceEEEecchhhhhhccCccc-cccccceECCCCCEEEEeeehhhhccccceEEEEe
Confidence            899999987533333322233 34678999999999999986      344555553

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.18  E-value=7.1e-09  Score=81.07  Aligned_cols=143  Identities=12%  Similarity=0.181  Sum_probs=103.9

Q ss_pred             CCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCC-----CCeEEEEecCCeEEEEeCCCCceeeEEe
Q 040370           30 SGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSST-----GGMYVTASKDGAIRLWDGVSANCVRSIV  104 (228)
Q Consensus        30 ~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-----~~~l~~~~~dg~v~iwd~~~~~~~~~~~  104 (228)
                      +|.++++|+.||.|.|-.+.+.+.......     ..++.+++++|+     .+.+++|+.-| +.++.-+-........
T Consensus        82 ~Gey~asCS~DGkv~I~sl~~~~~~~~~df-----~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~  155 (846)
T KOG2066|consen   82 EGEYVASCSDDGKVVIGSLFTDDEITQYDF-----KRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVV  155 (846)
T ss_pred             CCceEEEecCCCcEEEeeccCCccceeEec-----CCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCcccee
Confidence            499999999999999999988776554443     678999999997     56899999988 7777643222222223


Q ss_pred             cccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecce----eeeeeeEEEECCCCcEEEEeeCCCCeEEE
Q 040370          105 GAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGAT----HTQLRFQAVFNDTEEFVLSIDEPSNEIVI  180 (228)
Q Consensus       105 ~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~d~~i~i  180 (228)
                      .+...++|.++.|.  |+++|-++.+| |++||+.+.+.+..++.+.    .......+.|.++.+.++.-+   .+|++
T Consensus       156 l~~~eG~I~~i~W~--g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVIGW~---d~v~i  229 (846)
T KOG2066|consen  156 LSEGEGPIHSIKWR--GNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVIGWG---DSVKI  229 (846)
T ss_pred             eecCccceEEEEec--CcEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEEEecC---CeEEE
Confidence            44458899999997  78888888777 9999999888777665432    223345567777666555432   57888


Q ss_pred             EEcC
Q 040370          181 WDAL  184 (228)
Q Consensus       181 ~d~~  184 (228)
                      ..++
T Consensus       230 ~~I~  233 (846)
T KOG2066|consen  230 CSIK  233 (846)
T ss_pred             EEEe
Confidence            8777

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.17  E-value=4.4e-08  Score=73.04  Aligned_cols=192  Identities=14%  Similarity=0.162  Sum_probs=132.3

Q ss_pred             cceEEEEEeCC--CCEEEE-----ecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEe--------
Q 040370           20 HNVRSVSFHPS--GDFLLA-----GTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTAS--------   84 (228)
Q Consensus        20 ~~v~~~~~~~~--~~~l~~-----~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--------   84 (228)
                      ..|....|+|.  +..||.     .+..+++++|.+..+..+.......    ..=..+.|++.|++++.--        
T Consensus       174 ~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk----~~~~qLkW~~~g~~ll~l~~t~~ksnK  249 (561)
T COG5354         174 VGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFK----VSGVQLKWQVLGKYLLVLVMTHTKSNK  249 (561)
T ss_pred             cceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEe----ecccEEEEecCCceEEEEEEEeeeccc
Confidence            56888889995  344553     5678899999998776655544432    2234578999888765321        


Q ss_pred             ---cCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEe--eCCCeEEEEEccCCeeEEEEecceeeeeeeEE
Q 040370           85 ---KDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSC--GKDSTVKLWEVSSGRLVKQYLGATHTQLRFQA  159 (228)
Q Consensus        85 ---~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~  159 (228)
                         ....+.+++++........ ..  .++|...+|.|.++.+++.  -.+..+.++|++.. ....+    .......+
T Consensus       250 syfgesnLyl~~~~e~~i~V~~-~~--~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~----Pe~~rNT~  321 (561)
T COG5354         250 SYFGESNLYLLRITERSIPVEK-DL--KDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYF----PEQKRNTI  321 (561)
T ss_pred             ceeccceEEEEeecccccceec-cc--cccceeeeecccCCceeEEecccccceeecccccc-eEEec----CCcccccc
Confidence               1256788888744433332 22  7799999999988776554  57888999999865 33333    34445678


Q ss_pred             EECCCCcEEEEeeCC--CCeEEEEEcCCcceeE-EeecCCCCCcEEEEeCCCCcEEEEec------CCCCEEEeee
Q 040370          160 VFNDTEEFVLSIDEP--SNEIVIWDALTAEKVA-KWSSNHIGAPRWIEHSPAEAAFITCG------TDRSVRFWKE  226 (228)
Q Consensus       160 ~~~~~~~~~~~~~~~--d~~i~i~d~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~s~~------~dg~i~vwd~  226 (228)
                      .|+|.+++++..|-.  -|.+.+||........ .+ .+  ....-+.|+|+++++.+.-      .|..|+|||+
T Consensus       322 ~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~-~~--~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v  394 (561)
T COG5354         322 FFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAF-NG--LNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDV  394 (561)
T ss_pred             cccCcccEEEEecCCccccceEEeccCCceEEEEEe-ec--CCceEeeccCCceEEEecCCCcccccCcceEEEEe
Confidence            899999999996652  3789999976655554 33 22  2345578999999888764      3788999996

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=99.16  E-value=5.1e-08  Score=69.01  Aligned_cols=184  Identities=15%  Similarity=0.136  Sum_probs=117.2

Q ss_pred             CCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCCCceeeEE-ecccc
Q 040370           30 SGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSI-VGAHG  108 (228)
Q Consensus        30 ~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~-~~~~~  108 (228)
                      ++..+++++.++.+..||..+|+.+......... ...   .  ...+..++.++.++.+..+|..+|+..... .....
T Consensus        35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~-~~~---~--~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~  108 (238)
T PF13360_consen   35 DGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPI-SGA---P--VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSP  108 (238)
T ss_dssp             ETTEEEEEETTSEEEEEETTTSEEEEEEECSSCG-GSG---E--EEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSC
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEeeccccc-cce---e--eecccccccccceeeeEecccCCcceeeeecccccc
Confidence            5677777889999999999999988777653211 111   1  224556777778889999999999988874 32210


Q ss_pred             cc-eeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeee---------eeeEEEECCCCcEEEEeeCCCCe-
Q 040370          109 TA-EATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQ---------LRFQAVFNDTEEFVLSIDEPSNE-  177 (228)
Q Consensus       109 ~~-~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~d~~-  177 (228)
                      .. .........+++.++.+..++.|..+|+++|+.+..........         ....+.+ .++ .++++.. ++. 
T Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~v~~~~~-~g~~  185 (238)
T PF13360_consen  109 PAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVI-SDG-RVYVSSG-DGRV  185 (238)
T ss_dssp             TCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEEC-CTT-EEEEECC-TSSE
T ss_pred             ccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEE-ECC-EEEEEcC-CCeE
Confidence            11 11122222237788888889999999999999987776532111         0122222 234 5555555 464 


Q ss_pred             EEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370          178 IVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEI  227 (228)
Q Consensus       178 i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~  227 (228)
                      +.+ |..+++..-..  . ...+..+ ..+++..|+.++.++.|..||+.
T Consensus       186 ~~~-d~~tg~~~w~~--~-~~~~~~~-~~~~~~~l~~~~~~~~l~~~d~~  230 (238)
T PF13360_consen  186 VAV-DLATGEKLWSK--P-ISGIYSL-PSVDGGTLYVTSSDGRLYALDLK  230 (238)
T ss_dssp             EEE-ETTTTEEEEEE--C-SS-ECEC-EECCCTEEEEEETTTEEEEEETT
T ss_pred             EEE-ECCCCCEEEEe--c-CCCccCC-ceeeCCEEEEEeCCCEEEEEECC
Confidence            555 99999866433  2 2233332 33567777777799999999964

...

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=99.14  E-value=1.6e-10  Score=57.14  Aligned_cols=38  Identities=21%  Similarity=0.395  Sum_probs=34.6

Q ss_pred             ceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEee
Q 040370          187 EKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWK  225 (228)
Q Consensus       187 ~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd  225 (228)
                      +++..+ .+|.++|.+++|+|++.+|++++.|+.|++||
T Consensus         2 ~~~~~~-~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    2 KCVRTF-RGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEE-ESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             eEEEEE-cCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            455566 79999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.14  E-value=7.8e-08  Score=73.36  Aligned_cols=142  Identities=7%  Similarity=0.057  Sum_probs=92.5

Q ss_pred             ceeeEEeCCCCCe-EEEEec---CCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEe-eC--CCeEEEEEcc
Q 040370           67 AINQVRYSSTGGM-YVTASK---DGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSC-GK--DSTVKLWEVS  139 (228)
Q Consensus        67 ~i~~~~~~~~~~~-l~~~~~---dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~--d~~i~~wd~~  139 (228)
                      ......|+|+|+. ++..+.   +..|.++|+.+++.......   ........|+|||+.++.. +.  +..|.++|+.
T Consensus       189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~---~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~  265 (419)
T PRK04043        189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASS---QGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTN  265 (419)
T ss_pred             CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecC---CCcEEeeEECCCCCEEEEEEccCCCcEEEEEECC
Confidence            5678899999984 554333   35699999988876554432   4445667899999876643 33  3568888987


Q ss_pred             CCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCC--eEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecC
Q 040370          140 SGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSN--EIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGT  217 (228)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~--~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~  217 (228)
                      +++.. .+..  .........|+|+|+.++.+....+  .|++.|+.+++.......+.  .  ...|+|+|+.|+..+.
T Consensus       266 ~g~~~-~LT~--~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~--~--~~~~SPDG~~Ia~~~~  338 (419)
T PRK04043        266 TKTLT-QITN--YPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGK--N--NSSVSTYKNYIVYSSR  338 (419)
T ss_pred             CCcEE-Eccc--CCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCC--c--CceECCCCCEEEEEEc
Confidence            76543 3322  1222345679999988777664333  68888888776643331221  1  2489999998877664


Q ss_pred             C
Q 040370          218 D  218 (228)
Q Consensus       218 d  218 (228)
                      .
T Consensus       339 ~  339 (419)
T PRK04043        339 E  339 (419)
T ss_pred             C
Confidence            3

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=99.12  E-value=2.1e-09  Score=73.43  Aligned_cols=190  Identities=12%  Similarity=0.104  Sum_probs=112.6

Q ss_pred             eCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEec-----CCeEEEEeCCCCceeeE
Q 040370           28 HPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASK-----DGAIRLWDGVSANCVRS  102 (228)
Q Consensus        28 ~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-----dg~v~iwd~~~~~~~~~  102 (228)
                      +--+..++++..||.+.+.+.+.... ...+.+..+ .+ --+.+....++.+.++..     -+..+.|+++..+....
T Consensus        98 s~~~t~V~~~~~dg~~~v~s~~~~~~-~~~~i~~~~-~~-~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~  174 (319)
T KOG4714|consen   98 TMTDNRVCIGYADGSLAVFSTDKDLA-LMSRIPSIH-SG-SASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIP  174 (319)
T ss_pred             cccCCceEecCCCceEEEEechHHHh-hhhhccccc-cc-ccccceeecccEEecCCcceEeeccceeeecccccccccc
Confidence            33567899999999999999876221 111111111 11 112223334554444331     23456666654433222


Q ss_pred             EecccccceeEEEEECC-CCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCCeEEEE
Q 040370          103 IVGAHGTAEATSANFTK-DQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIW  181 (228)
Q Consensus       103 ~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~  181 (228)
                      -...  ...|.+++-+| ..+.+++|+.||.+-+||.++...+..+. ..|...+..+.|+|....-+.++++||.+..|
T Consensus       175 ~~~~--~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l-~ahk~~i~eV~FHpk~p~~Lft~sedGslw~w  251 (319)
T KOG4714|consen  175 SKKA--LDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLL-KAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHW  251 (319)
T ss_pred             cccc--cccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHH-HHhhhhhhheeccCCCchheeEecCCCcEEEE
Confidence            2221  33489999999 45677888999999999999875443332 23778889999999765544445668999999


Q ss_pred             EcCCcceeEEe---------ec---------------CCCCCcEEEEeCCCCcEEEEecCCCCEEEeee
Q 040370          182 DALTAEKVAKW---------SS---------------NHIGAPRWIEHSPAEAAFITCGTDRSVRFWKE  226 (228)
Q Consensus       182 d~~~~~~~~~~---------~~---------------~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~  226 (228)
                      |..+ ..+..-         ..               .-...|++  |.--|..|++|+.-+.|.+.+-
T Consensus       252 das~-~~l~i~~~~s~~s~WLsgD~v~s~i~i~~ll~~~~~Sins--fDV~g~~lVcgtd~eaIyl~~~  317 (319)
T KOG4714|consen  252 DAST-TFLSISNQASVISSWLSGDPVKSRIEITSLLPSRSLSINS--FDVLGPCLVCGTDAEAIYLTRH  317 (319)
T ss_pred             cCCC-ceEEecCccccccccccCCcccceEeeeccccccceeeee--eeccCceEEeccccceEEEecc
Confidence            9763 221110         00               01112222  3335778999998888988763

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.11  E-value=3.9e-08  Score=73.30  Aligned_cols=199  Identities=12%  Similarity=0.122  Sum_probs=130.9

Q ss_pred             cCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecC-----------
Q 040370           18 DTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKD-----------   86 (228)
Q Consensus        18 ~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----------   86 (228)
                      ..-++..++|||.|.+|++....+ |.+|.-.....+..+.      ...|..+.|+|.+++|.+=+..           
T Consensus        31 ~~~p~~~~~~SP~G~~l~~~~~~~-V~~~~g~~~~~l~~~~------~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp  103 (561)
T COG5354          31 ENWPVAYVSESPLGTYLFSEHAAG-VECWGGPSKAKLVRFR------HPDVKYLDFSPNEKYLVTWSREPIIEPEIEISP  103 (561)
T ss_pred             cCcchhheeecCcchheehhhccc-eEEccccchhheeeee------cCCceecccCcccceeeeeccCCccChhhccCC
Confidence            456889999999999999887765 7899887766443333      4578999999999999986543           


Q ss_pred             ----CeEEEEeCCCCceeeEEecccc-------------------------------------------cceeEEEEECC
Q 040370           87 ----GAIRLWDGVSANCVRSIVGAHG-------------------------------------------TAEATSANFTK  119 (228)
Q Consensus        87 ----g~v~iwd~~~~~~~~~~~~~~~-------------------------------------------~~~i~~~~~~~  119 (228)
                          ..+.+||+.++..+..+.....                                           ...+....|+|
T Consensus       104 ~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~~sl~i~e~t~n~~~~p~~~lr~~gi~dFsisP  183 (561)
T COG5354         104 FTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVGSSLYIHEITDNIEEHPFKNLRPVGILDFSISP  183 (561)
T ss_pred             ccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhccCeEEEEecCCccccCchhhccccceeeEEecC
Confidence                3499999988776655433211                                           13345555666


Q ss_pred             CC--CEEE-----EeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeC----------CCCeEEEEE
Q 040370          120 DQ--RFVL-----SCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDE----------PSNEIVIWD  182 (228)
Q Consensus       120 ~~--~~l~-----~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~d~~i~i~d  182 (228)
                      .+  ..|+     ..+.++.+++|.+..+..+.+...  -...-..+.|++.+.++++-..          ....+++++
T Consensus       184 ~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~l--fk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~  261 (561)
T COG5354         184 EGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNL--FKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLR  261 (561)
T ss_pred             CCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeee--EeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEe
Confidence            32  2233     234556677777765554443322  2334457788888888765321          125678888


Q ss_pred             cCCcceeEEeecCCCCCcEEEEeCCCCcEEEEec--CCCCEEEeeec
Q 040370          183 ALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCG--TDRSVRFWKEI  227 (228)
Q Consensus       183 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~--~dg~i~vwd~~  227 (228)
                      ++.......  ....++|...+|.|.++.+++.+  .+-.+.++|+.
T Consensus       262 ~~e~~i~V~--~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr  306 (561)
T COG5354         262 ITERSIPVE--KDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLR  306 (561)
T ss_pred             eccccccee--ccccccceeeeecccCCceeEEecccccceeecccc
Confidence            763333332  25688999999999888776655  56667777653

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.11  E-value=6.3e-11  Score=93.47  Aligned_cols=192  Identities=19%  Similarity=0.278  Sum_probs=137.3

Q ss_pred             EEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCC--eEE
Q 040370           13 FRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDG--AIR   90 (228)
Q Consensus        13 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg--~v~   90 (228)
                      ..+..|+...+|++|+-+.+.|+.|+..|.|+++++.+|........    |.++|+-+.-+.+|..+++.+.-.  ...
T Consensus      1095 ~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~nc----H~SavT~vePs~dgs~~Ltsss~S~Plsa 1170 (1516)
T KOG1832|consen 1095 RSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNC----HQSAVTLVEPSVDGSTQLTSSSSSSPLSA 1170 (1516)
T ss_pred             hhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccc----cccccccccccCCcceeeeeccccCchHH
Confidence            34456889999999999999999999999999999999886554443    388999999999998777665432  478


Q ss_pred             EEeCCC-CceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecce--eeeeeeEEEECCCCcE
Q 040370           91 LWDGVS-ANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGAT--HTQLRFQAVFNDTEEF  167 (228)
Q Consensus        91 iwd~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~  167 (228)
                      +|++.+ +.....+      ..-.++.|+...+.-+.|.......+||+.++..+.++....  .......+.|+|+...
T Consensus      1171 LW~~~s~~~~~Hsf------~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~L 1244 (1516)
T KOG1832|consen 1171 LWDASSTGGPRHSF------DEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTL 1244 (1516)
T ss_pred             HhccccccCccccc------cccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcce
Confidence            899864 2333333      344678888765555566666679999999988777643211  1223356789999998


Q ss_pred             EEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370          168 VLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEI  227 (228)
Q Consensus       168 ~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~  227 (228)
                      ++-    ||  .+||++..+.++.+ .... .-..-.|+|+|..++.-++     |||++
T Consensus      1245 Iln----dG--vLWDvR~~~aIh~F-D~ft-~~~~G~FHP~g~eVIINSE-----IwD~R 1291 (1516)
T KOG1832|consen 1245 ILN----DG--VLWDVRIPEAIHRF-DQFT-DYGGGGFHPSGNEVIINSE-----IWDMR 1291 (1516)
T ss_pred             Eee----Cc--eeeeeccHHHHhhh-hhhe-ecccccccCCCceEEeech-----hhhhH
Confidence            875    44  47999988877776 2222 2223358999988887664     66654

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=99.11  E-value=6.4e-10  Score=54.98  Aligned_cols=37  Identities=19%  Similarity=0.469  Sum_probs=34.3

Q ss_pred             eeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEE
Q 040370           11 RAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYD   47 (228)
Q Consensus        11 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~   47 (228)
                      ....+.+|..+|++++|+|++.+|++|+.|+.|++||
T Consensus         3 ~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    3 CVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             EEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            4567779999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.08  E-value=1.7e-08  Score=76.11  Aligned_cols=182  Identities=10%  Similarity=0.121  Sum_probs=126.0

Q ss_pred             eEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEec-----------CCeEE
Q 040370           22 VRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASK-----------DGAIR   90 (228)
Q Consensus        22 v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-----------dg~v~   90 (228)
                      =+-+.|||.|.||++--..| |.+|--++....+.+.      ...|.-+.|||..++|+|-+.           ...++
T Consensus       213 etyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~RF~------Hp~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~  285 (698)
T KOG2314|consen  213 ETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQRFY------HPGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLI  285 (698)
T ss_pred             eeeEEecCCceEEEEEeccc-eeeecCccHHHHHhcc------CCCceeeecCCccceEEEecCCccccCcccCCCceEE
Confidence            35688999999999988776 6799766655444333      345888999999999998752           25799


Q ss_pred             EEeCCCCceeeEEeccccccee-EEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEE
Q 040370           91 LWDGVSANCVRSIVGAHGTAEA-TSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVL  169 (228)
Q Consensus        91 iwd~~~~~~~~~~~~~~~~~~i-~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (228)
                      |||+.+|...+.+.....+..+ .-..||.|++++|.-..+ .|.||+..+..++..-..  ....+....|+|.+..++
T Consensus       286 IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~-sisIyEtpsf~lld~Ksl--ki~gIr~FswsP~~~llA  362 (698)
T KOG2314|consen  286 IWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGN-SISIYETPSFMLLDKKSL--KISGIRDFSWSPTSNLLA  362 (698)
T ss_pred             EEEccccchhcceeccCCCccccceEEeccCCceeEEeccc-eEEEEecCceeeeccccc--CCccccCcccCCCcceEE
Confidence            9999999988888764323333 346899999999877664 699999776443322211  344566778888877766


Q ss_pred             EeeCC----CCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEE
Q 040370          170 SIDEP----SNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFIT  214 (228)
Q Consensus       170 ~~~~~----d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s  214 (228)
                      --...    -..+.+-.+.+++.+.+. .-+.-.=..+.|..+|.+|+.
T Consensus       363 Ywtpe~~~~parvtL~evPs~~~iRt~-nlfnVsDckLhWQk~gdyLcv  410 (698)
T KOG2314|consen  363 YWTPETNNIPARVTLMEVPSKREIRTK-NLFNVSDCKLHWQKSGDYLCV  410 (698)
T ss_pred             EEcccccCCcceEEEEecCccceeeec-cceeeeccEEEeccCCcEEEE
Confidence            53322    135667777777666654 334444455778788888874

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=99.05  E-value=6.7e-08  Score=79.04  Aligned_cols=198  Identities=12%  Similarity=0.189  Sum_probs=132.5

Q ss_pred             cceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeC----C
Q 040370           20 HNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDG----V   95 (228)
Q Consensus        20 ~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~----~   95 (228)
                      ..|.++.|..+.+.++.+...|.|.+-|.++......-.     ....|.+++|+||++.++..+..+++.+-+-    -
T Consensus        69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~-----vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i  143 (1265)
T KOG1920|consen   69 DEIVSVQFLADTNSICVITALGDIILVDPETLELEIVGN-----VDNGISAASWSPDEELLALITGRQTLLFMTKDFEPI  143 (1265)
T ss_pred             cceEEEEEecccceEEEEecCCcEEEEcccccceeeeee-----ccCceEEEeecCCCcEEEEEeCCcEEEEEeccccch
Confidence            589999999999999999999999999888765432222     2678999999999999998888888776532    0


Q ss_pred             C-------------------CceeeEEecccc-------------------cceeEEEEECCCCCEEEEe-----eCCCe
Q 040370           96 S-------------------ANCVRSIVGAHG-------------------TAEATSANFTKDQRFVLSC-----GKDST  132 (228)
Q Consensus        96 ~-------------------~~~~~~~~~~~~-------------------~~~i~~~~~~~~~~~l~~~-----~~d~~  132 (228)
                      .                   |+....+.+..+                   ...=+.+.|--||+++++.     ...+.
T Consensus       144 ~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~Rk  223 (1265)
T KOG1920|consen  144 AEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRK  223 (1265)
T ss_pred             hccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCcee
Confidence            0                   111111111000                   0112358899999999873     23378


Q ss_pred             EEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeC--CCCeEEEEEcCCcceeEEee---cCCCCCcEEEEeCC
Q 040370          133 VKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDE--PSNEIVIWDALTAEKVAKWS---SNHIGAPRWIEHSP  207 (228)
Q Consensus       133 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~~---~~~~~~v~~~~~~~  207 (228)
                      |++||-+ +..-..-..  ....-.++.|-|.|..+++...  .|+.|.+|. ++|-....+.   .....++..++|+.
T Consensus       224 irV~drE-g~Lns~se~--~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffE-rNGL~hg~f~l~~p~de~~ve~L~Wns  299 (1265)
T KOG1920|consen  224 IRVYDRE-GALNSTSEP--VEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFE-RNGLRHGEFVLPFPLDEKEVEELAWNS  299 (1265)
T ss_pred             EEEeccc-chhhcccCc--ccccccceeecCCCCeEeeeeecCCCCcEEEEe-cCCccccccccCCcccccchheeeecC
Confidence            9999976 433222211  3334467889999998887643  356799998 4444333221   22334589999999


Q ss_pred             CCcEEEE---ecCCCCEEEeee
Q 040370          208 AEAAFIT---CGTDRSVRFWKE  226 (228)
Q Consensus       208 ~~~~l~s---~~~dg~i~vwd~  226 (228)
                      ++..|+.   ......|++|-+
T Consensus       300 ~sdiLAv~~~~~e~~~v~lwt~  321 (1265)
T KOG1920|consen  300 NSDILAVVTSNLENSLVQLWTT  321 (1265)
T ss_pred             CCCceeeeecccccceEEEEEe
Confidence            9999887   555555999954

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.03  E-value=3.9e-08  Score=71.35  Aligned_cols=206  Identities=12%  Similarity=0.082  Sum_probs=123.3

Q ss_pred             EEEeecCcceEEEEEeCCCC-EEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCC-CCeEEEEecCCeEE
Q 040370           13 FRVIQDTHNVRSVSFHPSGD-FLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSST-GGMYVTASKDGAIR   90 (228)
Q Consensus        13 ~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~v~   90 (228)
                      .-+..|...|..++|+|..+ ++..++.+..|+|.|+++...+..+..     ...+.+++|.-+ .+++..|..+|.|.
T Consensus       187 q~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a-----~~~~wSC~wDlde~h~IYaGl~nG~Vl  261 (463)
T KOG1645|consen  187 QILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIA-----YNQIWSCCWDLDERHVIYAGLQNGMVL  261 (463)
T ss_pred             hcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheec-----cCCceeeeeccCCcceeEEeccCceEE
Confidence            34456788999999999766 788899999999999999887766654     467999999875 45788888999999


Q ss_pred             EEeCCCCceee-EEeccc-------------------------------------------------ccceeEEEEECCC
Q 040370           91 LWDGVSANCVR-SIVGAH-------------------------------------------------GTAEATSANFTKD  120 (228)
Q Consensus        91 iwd~~~~~~~~-~~~~~~-------------------------------------------------~~~~i~~~~~~~~  120 (228)
                      +||++..+... .+....                                                 ..+...++++++.
T Consensus       262 vyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~l~f~ei~~s~~~~p~vlele~pG~cismqy~~~  341 (463)
T KOG1645|consen  262 VYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTVLQFYEIVFSAECLPCVLELEPPGICISMQYHGV  341 (463)
T ss_pred             EEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehhhhhhhhhccccCCCcccccCCCcceeeeeecCc
Confidence            99998653211 111100                                                 0122333333332


Q ss_pred             CCEEEEeeCC-C------eEE-EEEccCCeeEEEEecce-----eee-eeeEEEECCCCcEEEEeeCCCCeEEEEEcCCc
Q 040370          121 QRFVLSCGKD-S------TVK-LWEVSSGRLVKQYLGAT-----HTQ-LRFQAVFNDTEEFVLSIDEPSNEIVIWDALTA  186 (228)
Q Consensus       121 ~~~l~~~~~d-~------~i~-~wd~~~~~~~~~~~~~~-----~~~-~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~  186 (228)
                      .+.++..... .      .+- --|-++|..+...+...     ... ....+.-.++..+++..+...+.+.+||..++
T Consensus       342 snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s~  421 (463)
T KOG1645|consen  342 SNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHSF  421 (463)
T ss_pred             cceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEeccchh
Confidence            2322222111 0      000 01112222222111100     000 01112224566788887777799999999999


Q ss_pred             ceeEEeecCCCCCcEEEEeCC-CC-cEEEEecCCCCEEEeee
Q 040370          187 EKVAKWSSNHIGAPRWIEHSP-AE-AAFITCGTDRSVRFWKE  226 (228)
Q Consensus       187 ~~~~~~~~~~~~~v~~~~~~~-~~-~~l~s~~~dg~i~vwd~  226 (228)
                      +.+..+  .-..+|..+.... ++ .+|++- .|..++|++.
T Consensus       422 evvQ~l--~~~epv~Dicp~~~n~~syLa~L-Td~~v~Iyk~  460 (463)
T KOG1645|consen  422 EVVQTL--ALSEPVLDICPNDTNGSSYLALL-TDDRVHIYKN  460 (463)
T ss_pred             heeeec--ccCcceeecceeecCCcchhhhe-ecceEEEEec
Confidence            999887  3447787776543 33 355544 5667888764

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=99.02  E-value=7.4e-08  Score=75.56  Aligned_cols=209  Identities=12%  Similarity=0.098  Sum_probs=143.7

Q ss_pred             ceeEEEeecCcceEEEEEeCCC------------CEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCC--
Q 040370           10 KRAFRVIQDTHNVRSVSFHPSG------------DFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSS--   75 (228)
Q Consensus        10 ~~~~~~~~~~~~v~~~~~~~~~------------~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--   75 (228)
                      +....+..|...|+.+.|.|..            -.||++...|.|.+||...+..+..+..+    ..++..++|-+  
T Consensus        46 q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~----~~~~qdl~W~~~r  121 (1062)
T KOG1912|consen   46 QLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHS----NDSVQDLCWVPAR  121 (1062)
T ss_pred             hhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCC----Ccchhheeeeecc
Confidence            3344445688999999998721            25778888999999999887655444432    77888898866  


Q ss_pred             -CC-CeEEEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECC-CCCEEEEeeCCCeEEEEEccC-------CeeEE
Q 040370           76 -TG-GMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTK-DQRFVLSCGKDSTVKLWEVSS-------GRLVK  145 (228)
Q Consensus        76 -~~-~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~~wd~~~-------~~~~~  145 (228)
                       +. ..|++-....++.+|+..+|+...+....  .....|+.+.| |.+.+..-+..|.+.+-+.-.       ++..+
T Consensus       122 d~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys--~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~q  199 (1062)
T KOG1912|consen  122 DDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYS--HEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQ  199 (1062)
T ss_pred             CcchheeEEecCCcEEEEEEccCCceeeccccC--CcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEE
Confidence             33 46677777889999999999988777664  45677799999 667777667777777766432       12211


Q ss_pred             EEecce--------------eee---------eeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEE
Q 040370          146 QYLGAT--------------HTQ---------LRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRW  202 (228)
Q Consensus       146 ~~~~~~--------------~~~---------~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~  202 (228)
                      .-..+.              +..         ....++|+|.-+.++.... ...+.++|++-..++.... -..+.+.-
T Consensus       200 I~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~-prellv~dle~~~~l~vvp-ier~~akf  277 (1062)
T KOG1912|consen  200 ITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITF-PRELLVFDLEYECCLAVVP-IERGGAKF  277 (1062)
T ss_pred             EecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEe-ccceEEEcchhhceeEEEE-eccCCcce
Confidence            111100              000         1123567888777666666 4899999998888887763 33455556


Q ss_pred             EEeCCC--CcEEEEecCCCCEEEeee
Q 040370          203 IEHSPA--EAAFITCGTDRSVRFWKE  226 (228)
Q Consensus       203 ~~~~~~--~~~l~s~~~dg~i~vwd~  226 (228)
                      +.+-|+  ...|++...||.+.+|-.
T Consensus       278 v~vlP~~~rd~LfclH~nG~ltirvr  303 (1062)
T KOG1912|consen  278 VDVLPDPRRDALFCLHSNGRLTIRVR  303 (1062)
T ss_pred             eEeccCCCcceEEEEecCCeEEEEEe
Confidence            667665  457999999999999964

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.00  E-value=1.8e-07  Score=70.89  Aligned_cols=180  Identities=12%  Similarity=0.001  Sum_probs=111.1

Q ss_pred             CEEEEecCCCeEEEEEcccceEEeeeccceeeec---cceeeEEeCC--CCCeEEEEecCCeEEEEeCCCCceeeEEecc
Q 040370           32 DFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVN---GAINQVRYSS--TGGMYVTASKDGAIRLWDGVSANCVRSIVGA  106 (228)
Q Consensus        32 ~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~---~~i~~~~~~~--~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~  106 (228)
                      ..++.+..++.+..+|.++|+...........-.   .....+.-+|  .+..++.++.+|.+..+|.++++........
T Consensus       191 ~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~  270 (377)
T TIGR03300       191 GGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDAS  270 (377)
T ss_pred             CEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeeccC
Confidence            4677788889999999999886654332110000   0011111112  3557888888999999999999877655421


Q ss_pred             cccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCc
Q 040370          107 HGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTA  186 (228)
Q Consensus       107 ~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~  186 (228)
                         . .....  ..+..++.++.+|.+..+|..+++.+...... ..........  .+..+++.+. +|.++++|..++
T Consensus       271 ---~-~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~-~~~~~ssp~i--~g~~l~~~~~-~G~l~~~d~~tG  340 (377)
T TIGR03300       271 ---S-YQGPA--VDDNRLYVTDADGVVVALDRRSGSELWKNDEL-KYRQLTAPAV--VGGYLVVGDF-EGYLHWLSREDG  340 (377)
T ss_pred             ---C-ccCce--EeCCEEEEECCCCeEEEEECCCCcEEEccccc-cCCccccCEE--ECCEEEEEeC-CCEEEEEECCCC
Confidence               1 11111  24667888889999999999999876554221 1111111111  3456666554 799999999999


Q ss_pred             ceeEEeecCCCCCcE-EEEeCCCCcEEEEecCCCCEEEe
Q 040370          187 EKVAKWSSNHIGAPR-WIEHSPAEAAFITCGTDRSVRFW  224 (228)
Q Consensus       187 ~~~~~~~~~~~~~v~-~~~~~~~~~~l~s~~~dg~i~vw  224 (228)
                      +.+.++. .+...+. ...+. + ..|+.++.||.|..|
T Consensus       341 ~~~~~~~-~~~~~~~~sp~~~-~-~~l~v~~~dG~l~~~  376 (377)
T TIGR03300       341 SFVARLK-TDGSGIASPPVVV-G-DGLLVQTRDGDLYAF  376 (377)
T ss_pred             CEEEEEE-cCCCccccCCEEE-C-CEEEEEeCCceEEEe
Confidence            9988873 3333222 22222 3 358888899998765

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=99.00  E-value=1.9e-06  Score=61.73  Aligned_cols=201  Identities=12%  Similarity=0.105  Sum_probs=133.5

Q ss_pred             cceEEEEEeC-CCCEEEEecCCC-eEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEec-----CCeEEEE
Q 040370           20 HNVRSVSFHP-SGDFLLAGTDHP-IAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASK-----DGAIRLW   92 (228)
Q Consensus        20 ~~v~~~~~~~-~~~~l~~~~~d~-~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-----dg~v~iw   92 (228)
                      .....++.+| ....++.+-.-| ...+||..+++....+..+...|-  --.-.|+++|++|++.-.     .|.|-||
T Consensus         5 ~RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHF--yGHg~fs~dG~~LytTEnd~~~g~G~IgVy   82 (305)
T PF07433_consen    5 ARGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHF--YGHGVFSPDGRLLYTTENDYETGRGVIGVY   82 (305)
T ss_pred             ccccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEE--ecCEEEcCCCCEEEEeccccCCCcEEEEEE
Confidence            3455678888 556666676655 467899999988776665543321  123679999999998744     4889999


Q ss_pred             eCC-CCceeeEEecccccceeEEEEECCCCCEEEEee------------------CCCeEEEEEccCCeeEEEEec--ce
Q 040370           93 DGV-SANCVRSIVGAHGTAEATSANFTKDQRFVLSCG------------------KDSTVKLWEVSSGRLVKQYLG--AT  151 (228)
Q Consensus        93 d~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~------------------~d~~i~~wd~~~~~~~~~~~~--~~  151 (228)
                      |.. +-+.+.++..+  ......+.+.||++.|+.+-                  .+.++.+.|.++|+.+.+...  ..
T Consensus        83 d~~~~~~ri~E~~s~--GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~  160 (305)
T PF07433_consen   83 DAARGYRRIGEFPSH--GIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDL  160 (305)
T ss_pred             ECcCCcEEEeEecCC--CcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccc
Confidence            998 55666777665  44556788999998777663                  233566677788888777554  33


Q ss_pred             eeeeeeEEEECCCCcEEEEeeCC----C--CeEEEEEcCCcceeEEee------cCCCCCcEEEEeCCCCcEEEEe-cCC
Q 040370          152 HTQLRFQAVFNDTEEFVLSIDEP----S--NEIVIWDALTAEKVAKWS------SNHIGAPRWIEHSPAEAAFITC-GTD  218 (228)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~----d--~~i~i~d~~~~~~~~~~~------~~~~~~v~~~~~~~~~~~l~s~-~~d  218 (228)
                      +...+.-+++.+++..++..-.+    +  --+-+++.  ++.+..+.      ..-.+.+-+|++++++.+++.+ =.-
T Consensus       161 ~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~--g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrG  238 (305)
T PF07433_consen  161 HQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRR--GGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRG  238 (305)
T ss_pred             cccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcC--CCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCC
Confidence            56667778888887766654321    0  12333332  22222221      2345678999999999877554 478


Q ss_pred             CCEEEeee
Q 040370          219 RSVRFWKE  226 (228)
Q Consensus       219 g~i~vwd~  226 (228)
                      +.+.+||.
T Consensus       239 g~~~~~d~  246 (305)
T PF07433_consen  239 GRVAVWDA  246 (305)
T ss_pred             CEEEEEEC
Confidence            88999985

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.99  E-value=7.9e-08  Score=73.15  Aligned_cols=125  Identities=12%  Similarity=0.148  Sum_probs=86.8

Q ss_pred             EEEeecCcceEEEEEeC-CCCEEEEe----cCCCe----EEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEE
Q 040370           13 FRVIQDTHNVRSVSFHP-SGDFLLAG----TDHPI----AHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTA   83 (228)
Q Consensus        13 ~~~~~~~~~v~~~~~~~-~~~~l~~~----~~d~~----i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~   83 (228)
                      +....-.....++.|+. +...+.+.    +.+|.    -.+|++..++. +............+.+++++|+...++.|
T Consensus       199 L~yirTE~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~kl-qrvsvtsipL~s~v~~ca~sp~E~kLvlG  277 (545)
T PF11768_consen  199 LSYIRTENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKL-QRVSVTSIPLPSQVICCARSPSEDKLVLG  277 (545)
T ss_pred             EEEEEecCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCce-eEEEEEEEecCCcceEEecCcccceEEEE
Confidence            33334455567788876 44444442    33443    34566655442 22233333447889999999999999999


Q ss_pred             ecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCe
Q 040370           84 SKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGR  142 (228)
Q Consensus        84 ~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~  142 (228)
                      +.||+|.+||...+..... +.   .-..+.++|+|+|..+++|+..|.+.+||+.-..
T Consensus       278 C~DgSiiLyD~~~~~t~~~-ka---~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALsp  332 (545)
T PF11768_consen  278 CEDGSIILYDTTRGVTLLA-KA---EFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSP  332 (545)
T ss_pred             ecCCeEEEEEcCCCeeeee-ee---cccceEEEEcCCCcEEEEEcCCceEEEEEeecCc
Confidence            9999999999876633322 22   4567889999999999999999999999986543

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.99  E-value=2e-08  Score=70.63  Aligned_cols=203  Identities=18%  Similarity=0.185  Sum_probs=129.3

Q ss_pred             CcceEEEEEeCCC--CEEEEecCCCeEEEEEcccceEE----------------------eee-----------------
Q 040370           19 THNVRSVSFHPSG--DFLLAGTDHPIAHLYDVNTFQCY----------------------LSA-----------------   57 (228)
Q Consensus        19 ~~~v~~~~~~~~~--~~l~~~~~d~~i~vw~~~~~~~~----------------------~~~-----------------   57 (228)
                      ...|..+.|..++  ..++..+.|.+|++|.+......                      +.+                 
T Consensus        85 eEKin~I~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~  164 (460)
T COG5170          85 EEKINAIEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPC  164 (460)
T ss_pred             HHHhhheeeecCCCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccc
Confidence            4568888887643  46777788999999987543100                      000                 


Q ss_pred             ccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCCCceeeEE---eccc---ccceeEEEEECC-CCCEEEEeeCC
Q 040370           58 NVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSI---VGAH---GTAEATSANFTK-DQRFVLSCGKD  130 (228)
Q Consensus        58 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~---~~~~---~~~~i~~~~~~~-~~~~l~~~~~d  130 (228)
                      +.....|..-|+++.|+.+.+.++++ .|-.|.+|+++-......+   +.+.   -...|++..|+| ..+.+...+..
T Consensus       165 rvyaNaH~yhiNSiS~NsD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSk  243 (460)
T COG5170         165 RVYANAHPYHINSISFNSDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSK  243 (460)
T ss_pred             eeccccceeEeeeeeecCchheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCC
Confidence            00001224567889999888777765 5678999998754322222   2111   134578889999 45567777788


Q ss_pred             CeEEEEEccCCeeE------EEE--ecc------eeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCC
Q 040370          131 STVKLWEVSSGRLV------KQY--LGA------THTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNH  196 (228)
Q Consensus       131 ~~i~~wd~~~~~~~------~~~--~~~------~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~  196 (228)
                      |.|++-|+|.....      ...  .+.      .....+..+.|+++|+++++-..  -++++||++..+.+......|
T Consensus       244 G~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy--ltvkiwDvnm~k~pikTi~~h  321 (460)
T COG5170         244 GEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY--LTVKIWDVNMAKNPIKTIPMH  321 (460)
T ss_pred             CcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc--ceEEEEecccccCCceeechH
Confidence            99999999853221      111  000      02345678899999999998665  899999998765443332222


Q ss_pred             ------------CCCc---EEEEeCCCCcEEEEecCCCCEEEe
Q 040370          197 ------------IGAP---RWIEHSPAEAAFITCGTDRSVRFW  224 (228)
Q Consensus       197 ------------~~~v---~~~~~~~~~~~l~s~~~dg~i~vw  224 (228)
                                  ...|   ..+.|+.+...+++|+..+..-++
T Consensus       322 ~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiy  364 (460)
T COG5170         322 CDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIY  364 (460)
T ss_pred             HHHHHHHHhhhhccceeeeEEEEecCCcccccccccccceeee
Confidence                        1222   346788888888888877665554

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.98  E-value=1.1e-07  Score=74.59  Aligned_cols=184  Identities=12%  Similarity=0.116  Sum_probs=125.8

Q ss_pred             CcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCCCc
Q 040370           19 THNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSAN   98 (228)
Q Consensus        19 ~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~   98 (228)
                      ...+.|++++  ++.|+-|+.+|.|++++..... ...+.    | ...      ..+|.++++|+.||.|.|-.+-+.+
T Consensus        39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~~~-~~~~~----~-s~~------~~~Gey~asCS~DGkv~I~sl~~~~  104 (846)
T KOG2066|consen   39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQGNP-KTNFD----H-SSS------ILEGEYVASCSDDGKVVIGSLFTDD  104 (846)
T ss_pred             hhHHHHHHhh--cceeeeccccceEEEEecCCcc-ccccc----c-ccc------ccCCceEEEecCCCcEEEeeccCCc
Confidence            3556777774  6789999999999999876532 11111    1 111      5579999999999999999998888


Q ss_pred             eeeEEecccccceeEEEEECCC-----CCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeC
Q 040370           99 CVRSIVGAHGTAEATSANFTKD-----QRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDE  173 (228)
Q Consensus        99 ~~~~~~~~~~~~~i~~~~~~~~-----~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (228)
                      ....+..   ..++.+++++|+     .+.+++|+.-| +.++.-+=.........+...+.+.++.|.  |.+++-+ .
T Consensus       105 ~~~~~df---~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWa-n  177 (846)
T KOG2066|consen  105 EITQYDF---KRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWA-N  177 (846)
T ss_pred             cceeEec---CCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEe-c
Confidence            7777665   668999999997     56799999888 777653321111222334466778888885  5566654 3


Q ss_pred             CCCeEEEEEcCCcceeEEeecCCCC-----CcEEEEeCCCCcEEEEecCCCCEEEeee
Q 040370          174 PSNEIVIWDALTAEKVAKWSSNHIG-----APRWIEHSPAEAAFITCGTDRSVRFWKE  226 (228)
Q Consensus       174 ~d~~i~i~d~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~l~s~~~dg~i~vwd~  226 (228)
                       |-.|++||..+.+.+..+...+..     -...+.|.++.++++  |...+|+|..+
T Consensus       178 -d~Gv~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVI--GW~d~v~i~~I  232 (846)
T KOG2066|consen  178 -DDGVKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVI--GWGDSVKICSI  232 (846)
T ss_pred             -CCCcEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEEE--ecCCeEEEEEE
Confidence             567999999998888777544422     234577776655444  34445766654

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.98  E-value=2e-07  Score=73.83  Aligned_cols=194  Identities=13%  Similarity=0.171  Sum_probs=124.0

Q ss_pred             EEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCC-----eEEEEeCCCC---
Q 040370           26 SFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDG-----AIRLWDGVSA---   97 (228)
Q Consensus        26 ~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-----~v~iwd~~~~---   97 (228)
                      +|++.+..++.|+.+|.|.+.+-. .+....++...   .+-|..+....+.++|++-++|+     .+++||++.-   
T Consensus        30 c~~s~~~~vvigt~~G~V~~Ln~s-~~~~~~fqa~~---~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n  105 (933)
T KOG2114|consen   30 CCSSSTGSVVIGTADGRVVILNSS-FQLIRGFQAYE---QSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKN  105 (933)
T ss_pred             EEcCCCceEEEeeccccEEEeccc-ceeeehheecc---hhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCC
Confidence            457788999999999987776632 22223333221   22244444443446788777664     4999998643   


Q ss_pred             c---ee---eEE--ecccccceeEEEEECCCCCEEEEeeCCCeEEEEEcc--CCeeEEEEecceeeeeeeEEEECCCCcE
Q 040370           98 N---CV---RSI--VGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVS--SGRLVKQYLGATHTQLRFQAVFNDTEEF  167 (228)
Q Consensus        98 ~---~~---~~~--~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (228)
                      +   ++   +.+  ..+....++.+++.+.+-+.+++|-.+|.|..+.-+  ..+-.+....+....+++.+.+..++..
T Consensus       106 ~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s  185 (933)
T KOG2114|consen  106 NSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKS  185 (933)
T ss_pred             CCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCce
Confidence            1   22   111  122236788999999999999999999999988532  1111222233446778899999888877


Q ss_pred             -EEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeee
Q 040370          168 -VLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKE  226 (228)
Q Consensus       168 -~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~  226 (228)
                       ++++..  ..|.+|.+....+.......|..+++|..+++....+++++.. .+.+|+.
T Consensus       186 ~lFv~Tt--~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~e-~l~fY~s  242 (933)
T KOG2114|consen  186 VLFVATT--EQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGSE-FLYFYDS  242 (933)
T ss_pred             eEEEEec--ceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecCc-eEEEEcC
Confidence             333333  7899999874443444446788899999999866545555433 4666653

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.97  E-value=3.8e-07  Score=63.57  Aligned_cols=171  Identities=13%  Similarity=0.193  Sum_probs=111.3

Q ss_pred             ceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccc--eeeeccceeeEEeCCC------CCeEEEEecCCeEEEE
Q 040370           21 NVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVP--EISVNGAINQVRYSST------GGMYVTASKDGAIRLW   92 (228)
Q Consensus        21 ~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~------~~~l~~~~~dg~v~iw   92 (228)
                      .=+.++|+||+..||.+...|+|+++|+...+........  .+.....|..+.|.+.      ...|+.-..+|.++-|
T Consensus        45 QWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy  124 (282)
T PF15492_consen   45 QWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSY  124 (282)
T ss_pred             hheEEEECCCCcEEEEEcCCCeEEEEecccceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeE
Confidence            3467999999999999999999999999864432211111  1112456777777542      2256666778887777


Q ss_pred             eCCCC-----ceeeEEec-ccccceeEEEEECCCCCEEEEeeCCC-----------eEEEEEccCCeeEEE---------
Q 040370           93 DGVSA-----NCVRSIVG-AHGTAEATSANFTKDQRFVLSCGKDS-----------TVKLWEVSSGRLVKQ---------  146 (228)
Q Consensus        93 d~~~~-----~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~d~-----------~i~~wd~~~~~~~~~---------  146 (228)
                      -+..+     +....+.. .+....|.++.++|..++|+.|+...           -+..|.+-++.+-..         
T Consensus       125 ~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~  204 (282)
T PF15492_consen  125 LVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDI  204 (282)
T ss_pred             EEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccc
Confidence            65322     22233222 12266899999999988887776321           255565433211000         


Q ss_pred             -----------E-------ecceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEe
Q 040370          147 -----------Y-------LGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKW  192 (228)
Q Consensus       147 -----------~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~  192 (228)
                                 +       ........+..+..+|++..+++... +|.|.+|++.+-.....+
T Consensus       205 ~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~-sG~lsLW~iPsL~~~~~W  267 (282)
T PF15492_consen  205 TASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHF-SGSLSLWEIPSLRLQRSW  267 (282)
T ss_pred             cccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEc-CCeEEEEecCcchhhccc
Confidence                       0       01123567788999999999999877 699999999988877776

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.96  E-value=1.6e-08  Score=74.27  Aligned_cols=207  Identities=15%  Similarity=0.118  Sum_probs=141.4

Q ss_pred             eecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEec-CCeEEEEeC
Q 040370           16 IQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASK-DGAIRLWDG   94 (228)
Q Consensus        16 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~v~iwd~   94 (228)
                      .-|...|+.+.-. ..+++.+++.||.++.|.-..-..+........| ...|.+++.+-++..+.|.+. |..++++|+
T Consensus         6 ymhrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraH-L~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDv   83 (558)
T KOG0882|consen    6 YMHRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAH-LGVILSLAVSYDGWLFRSVEDPDHSVKVFDV   83 (558)
T ss_pred             hcccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHH-HHHHHhhhccccceeEeeccCcccceeEEEe
Confidence            3577778877554 5779999999999999986553333333322233 778889999999999999777 999999999


Q ss_pred             CCCceeeEEecccccceeEEEEECCC-C--CEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEe
Q 040370           95 VSANCVRSIVGAHGTAEATSANFTKD-Q--RFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSI  171 (228)
Q Consensus        95 ~~~~~~~~~~~~~~~~~i~~~~~~~~-~--~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (228)
                      ++-..+..++...-++.+..+ .++. .  ..-++.-.++.+.++|-....+...+....|..++....+++.+..+++.
T Consensus        84 En~DminmiKL~~lPg~a~wv-~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSi  162 (558)
T KOG0882|consen   84 ENFDMINMIKLVDLPGFAEWV-TSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSI  162 (558)
T ss_pred             eccchhhhcccccCCCceEEe-cCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeec
Confidence            887665444443213222222 2221 1  22233446788999998765433333334478889999999999988886


Q ss_pred             eCCCCeEEEEEcCC-cceeE-----Eee--------cCCCCCcEEEEeCCCCcEEEEecCCCCEEEeee
Q 040370          172 DEPSNEIVIWDALT-AEKVA-----KWS--------SNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKE  226 (228)
Q Consensus       172 ~~~d~~i~i~d~~~-~~~~~-----~~~--------~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~  226 (228)
                      .. .|.|.-|.... .+.+.     .+.        ........++.|+|++..+.+-+.|..|++++.
T Consensus       163 D~-~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~  230 (558)
T KOG0882|consen  163 DI-SGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVF  230 (558)
T ss_pred             cc-cceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEe
Confidence            65 59999998762 11111     110        123456788999999999999999999999875

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.96  E-value=2e-08  Score=76.24  Aligned_cols=78  Identities=21%  Similarity=0.282  Sum_probs=64.9

Q ss_pred             EEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEe
Q 040370           14 RVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWD   93 (228)
Q Consensus        14 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd   93 (228)
                      ..+.....|.|++++|+.+.|+.|+.||.|.+||...+..... +.     .-..+.++|+|+|..+++|+..|.+.+||
T Consensus       254 tsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~-ka-----~~~P~~iaWHp~gai~~V~s~qGelQ~FD  327 (545)
T PF11768_consen  254 TSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA-KA-----EFIPTLIAWHPDGAIFVVGSEQGELQCFD  327 (545)
T ss_pred             EEEecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeee-ee-----cccceEEEEcCCCcEEEEEcCCceEEEEE
Confidence            3346788999999999999999999999999999987653322 11     33468899999999999999999999999


Q ss_pred             CCCC
Q 040370           94 GVSA   97 (228)
Q Consensus        94 ~~~~   97 (228)
                      +.-.
T Consensus       328 ~ALs  331 (545)
T PF11768_consen  328 MALS  331 (545)
T ss_pred             eecC
Confidence            7643

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=98.95  E-value=8.1e-09  Score=80.19  Aligned_cols=157  Identities=8%  Similarity=0.125  Sum_probs=121.7

Q ss_pred             ccceeeEEeCCCCCeEEEEecCCeEEEEeCCCCce---------------eeEEecccccceeEEEEECCCCCEEEEeeC
Q 040370           65 NGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANC---------------VRSIVGAHGTAEATSANFTKDQRFVLSCGK  129 (228)
Q Consensus        65 ~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~---------------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  129 (228)
                      .....|+.|+....+++.|+.||.+++..+.+...               -+.+.+|  ...|..+.|+.+.+.|-+...
T Consensus        14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH--~~sV~vvTWNe~~QKLTtSDt   91 (1189)
T KOG2041|consen   14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGH--NASVMVVTWNENNQKLTTSDT   91 (1189)
T ss_pred             CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccC--cceEEEEEeccccccccccCC
Confidence            56789999999999999999999999998765321               1233444  788999999999999999999


Q ss_pred             CCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCC
Q 040370          130 DSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAE  209 (228)
Q Consensus       130 d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~  209 (228)
                      +|.|.+|-+-.+.....+........+.+++|+.+|..+...-. ||.|.+=.+...+....-.  .......+.|++|.
T Consensus        92 ~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYe-DGavIVGsvdGNRIwgKeL--kg~~l~hv~ws~D~  168 (1189)
T KOG2041|consen   92 SGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYE-DGAVIVGSVDGNRIWGKEL--KGQLLAHVLWSEDL  168 (1189)
T ss_pred             CceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEc-cCCEEEEeeccceecchhc--chheccceeecccH
Confidence            99999999998887777666667888899999999998877555 7888776654333222211  11234468899999


Q ss_pred             cEEEEecCCCCEEEeee
Q 040370          210 AAFITCGTDRSVRFWKE  226 (228)
Q Consensus       210 ~~l~s~~~dg~i~vwd~  226 (228)
                      +.++.+-..|.+.++|.
T Consensus       169 ~~~Lf~~ange~hlydn  185 (1189)
T KOG2041|consen  169 EQALFKKANGETHLYDN  185 (1189)
T ss_pred             HHHHhhhcCCcEEEecc
Confidence            88888888888988874

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.92  E-value=6.5e-07  Score=67.88  Aligned_cols=183  Identities=14%  Similarity=0.082  Sum_probs=111.5

Q ss_pred             CCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCCCceeeEEeccccc
Q 040370           30 SGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGT  109 (228)
Q Consensus        30 ~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~  109 (228)
                      .+..+++++.++.+..+|..+|+.+.........    ......  ++..++.++.+|.+..+|.++|+.+......   
T Consensus        64 ~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~----~~~p~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~---  134 (377)
T TIGR03300        64 AGGKVYAADADGTVVALDAETGKRLWRVDLDERL----SGGVGA--DGGLVFVGTEKGEVIALDAEDGKELWRAKLS---  134 (377)
T ss_pred             ECCEEEEECCCCeEEEEEccCCcEeeeecCCCCc----ccceEE--cCCEEEEEcCCCEEEEEECCCCcEeeeeccC---
Confidence            4678888989999999999999987766553211    112222  4667888889999999999999987765542   


Q ss_pred             ceeEE-EEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeee---eeEEEECCCCcEEEEeeCCCCeEEEEEcCC
Q 040370          110 AEATS-ANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQL---RFQAVFNDTEEFVLSIDEPSNEIVIWDALT  185 (228)
Q Consensus       110 ~~i~~-~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~  185 (228)
                      ..+.+ ...  .+..++.++.++.++.+|.++++.+..+........   ....... + ..++.+ ..++.+..+|.++
T Consensus       135 ~~~~~~p~v--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~-~-~~v~~~-~~~g~v~ald~~t  209 (377)
T TIGR03300       135 SEVLSPPLV--ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA-D-GGVLVG-FAGGKLVALDLQT  209 (377)
T ss_pred             ceeecCCEE--ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE-C-CEEEEE-CCCCEEEEEEccC
Confidence            22221 111  345677788899999999999988776653211100   0111111 2 344443 3468999999999


Q ss_pred             cceeEEeecCCCC------CcEEEEeCC--CCcEEEEecCCCCEEEeee
Q 040370          186 AEKVAKWSSNHIG------APRWIEHSP--AEAAFITCGTDRSVRFWKE  226 (228)
Q Consensus       186 ~~~~~~~~~~~~~------~v~~~~~~~--~~~~l~s~~~dg~i~vwd~  226 (228)
                      |+...........      ....+.-+|  .+..++.++.+|.+..||.
T Consensus       210 G~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~  258 (377)
T TIGR03300       210 GQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDL  258 (377)
T ss_pred             CCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEEC
Confidence            8876543211100      000011111  2445666666777777764

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.90  E-value=3.9e-06  Score=59.36  Aligned_cols=146  Identities=16%  Similarity=0.117  Sum_probs=94.9

Q ss_pred             CCCeEEEEEcccceEEeeeccceeeeccceeeEE--eCCCCCeEEEEecCCeEEEEeCCCCceeeEEecccccceeEEEE
Q 040370           39 DHPIAHLYDVNTFQCYLSANVPEISVNGAINQVR--YSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSAN  116 (228)
Q Consensus        39 ~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~--~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~  116 (228)
                      .+|.|..+|..+|+.+.......     ......  ..+++..+++++.++.+..||..+|+.+............  . 
T Consensus         1 ~~g~l~~~d~~tG~~~W~~~~~~-----~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~--~-   72 (238)
T PF13360_consen    1 DDGTLSALDPRTGKELWSYDLGP-----GIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGA--P-   72 (238)
T ss_dssp             -TSEEEEEETTTTEEEEEEECSS-----SCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSG--E-
T ss_pred             CCCEEEEEECCCCCEEEEEECCC-----CCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccce--e-
Confidence            36899999999999887775421     122222  2235667888889999999999999988777653211111  1 


Q ss_pred             ECCCCCEEEEeeCCCeEEEEEccCCeeEEEE-ecceeee-eeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeec
Q 040370          117 FTKDQRFVLSCGKDSTVKLWEVSSGRLVKQY-LGATHTQ-LRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSS  194 (228)
Q Consensus       117 ~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~  194 (228)
                       ...+..++.++.++.++.+|.++|+.+... ....... ..........+..+++... ++.|..+|.++|+.+.....
T Consensus        73 -~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~l~~~d~~tG~~~w~~~~  150 (238)
T PF13360_consen   73 -VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTS-SGKLVALDPKTGKLLWKYPV  150 (238)
T ss_dssp             -EEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEET-CSEEEEEETTTTEEEEEEES
T ss_pred             -eecccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEec-cCcEEEEecCCCcEEEEeec
Confidence             113556677778889999999999998874 3221110 1111111222666666555 59999999999999877743

...

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.89  E-value=1.3e-06  Score=68.18  Aligned_cols=186  Identities=12%  Similarity=0.129  Sum_probs=119.7

Q ss_pred             CCCEEEEecC-CCeEEEEEcccceEEeeeccceeeeccceeeEEe-------------------CCCCCeEEE-EecCCe
Q 040370           30 SGDFLLAGTD-HPIAHLYDVNTFQCYLSANVPEISVNGAINQVRY-------------------SSTGGMYVT-ASKDGA   88 (228)
Q Consensus        30 ~~~~l~~~~~-d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~-------------------~~~~~~l~~-~~~dg~   88 (228)
                      ||++|..-.. +..|...+++..++.+....+.   ...+..+.|                   +|+|+.+.. .-..+.
T Consensus       140 dGr~~findk~n~Rvari~l~~~~~~~i~~iPn---~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~l~~~~ey~~~  216 (635)
T PRK02888        140 DGRYLFINDKANTRVARIRLDVMKCDKITELPN---VQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKDLDDPKKYRSL  216 (635)
T ss_pred             ceeEEEEecCCCcceEEEECccEeeceeEeCCC---ccCccccCccccCCccEEEeCcccccccCCCCCEeecccceeEE
Confidence            6778877654 5667777777766555444433   223333333                   334443322 222356


Q ss_pred             EEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeC---------------------------------------
Q 040370           89 IRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGK---------------------------------------  129 (228)
Q Consensus        89 v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---------------------------------------  129 (228)
                      +.+.|.++.+....+...   .....++++|+++++++.+.                                       
T Consensus       217 vSvID~etmeV~~qV~Vd---gnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~vkdGK~~~V  293 (635)
T PRK02888        217 FTAVDAETMEVAWQVMVD---GNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEAVKAGKFKTI  293 (635)
T ss_pred             EEEEECccceEEEEEEeC---CCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHHHHHhhhCCCEEEE
Confidence            777787777666665552   24456778888888776651                                       


Q ss_pred             -CCeEEEEEccC-----CeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcce------------eEE
Q 040370          130 -DSTVKLWEVSS-----GRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEK------------VAK  191 (228)
Q Consensus       130 -d~~i~~wd~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~------------~~~  191 (228)
                       ++.|.+.|.++     .+.+..+.   -......+.++|+++++++++..++++.++|+.+.+.            ..+
T Consensus       294 ~gn~V~VID~~t~~~~~~~v~~yIP---VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvae  370 (635)
T PRK02888        294 GGSKVPVVDGRKAANAGSALTRYVP---VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAE  370 (635)
T ss_pred             CCCEEEEEECCccccCCcceEEEEE---CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEe
Confidence             24466777665     23333333   3344567889999999999999999999999988653            222


Q ss_pred             eecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeee
Q 040370          192 WSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKE  226 (228)
Q Consensus       192 ~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~  226 (228)
                      . .- .......+|.++|....|---|..|-.||+
T Consensus       371 v-ev-GlGPLHTaFDg~G~aytslf~dsqv~kwn~  403 (635)
T PRK02888        371 P-EL-GLGPLHTAFDGRGNAYTTLFLDSQIVKWNI  403 (635)
T ss_pred             e-cc-CCCcceEEECCCCCEEEeEeecceeEEEeh
Confidence            2 12 334556789999988888888999999996

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.89  E-value=4.2e-10  Score=85.83  Aligned_cols=201  Identities=13%  Similarity=0.166  Sum_probs=128.1

Q ss_pred             cCcceEEEEEeC--CCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCC-CCCeEEEEe----cCCeEE
Q 040370           18 DTHNVRSVSFHP--SGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSS-TGGMYVTAS----KDGAIR   90 (228)
Q Consensus        18 ~~~~v~~~~~~~--~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~----~dg~v~   90 (228)
                      ....+.|+++.-  +...+++|..+|.|.+-............  ...+....++++|++ |.+.||+|-    .|..+.
T Consensus        55 dtqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~--tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~  132 (783)
T KOG1008|consen   55 DTQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEV--TPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLK  132 (783)
T ss_pred             cCCCceeehhhcCCchhhhhhccccCceEEeecCCccccccee--cccccccccccccccccHHHHHhhhhhhcccCCcc
Confidence            455678888765  34578899999999998877543221111  112267899999998 566777763    367899


Q ss_pred             EEeCCCC--cee--eEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCee-EEEEecceeeeeeeEEEECC-C
Q 040370           91 LWDGVSA--NCV--RSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRL-VKQYLGATHTQLRFQAVFND-T  164 (228)
Q Consensus        91 iwd~~~~--~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~-~~~~~~~~~~~~~~~~~~~~-~  164 (228)
                      |||+.++  .+.  ..+... ......+++|..+.+.+.+|...+.++++|++.... ...+    ....+..+...| .
T Consensus       133 Iwdi~s~ltvPke~~~fs~~-~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~sv----nTk~vqG~tVdp~~  207 (783)
T KOG1008|consen  133 IWDINSLLTVPKESPLFSSS-TLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSV----NTKYVQGITVDPFS  207 (783)
T ss_pred             ceecccccCCCccccccccc-cccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhh----hhhhcccceecCCC
Confidence            9999876  221  122221 134456888888889999999999999999984322 1122    222344556667 4


Q ss_pred             CcEEEEeeCCCCeEEEEE-cCCcceeEEeecCC----CCCcEEEEeCCCC-cEEEEec-CCCCEEEeeec
Q 040370          165 EEFVLSIDEPSNEIVIWD-ALTAEKVAKWSSNH----IGAPRWIEHSPAE-AAFITCG-TDRSVRFWKEI  227 (228)
Q Consensus       165 ~~~~~~~~~~d~~i~i~d-~~~~~~~~~~~~~~----~~~v~~~~~~~~~-~~l~s~~-~dg~i~vwd~~  227 (228)
                      ..|+.+ .. ||.|.+|| .++-+.+.......    ...+..++|+|.. .++++.. ..++|+++|+.
T Consensus       208 ~nY~cs-~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~  275 (783)
T KOG1008|consen  208 PNYFCS-NS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC  275 (783)
T ss_pred             CCceec-cc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence            455544 44 79999999 55544433321222    2348999999943 3455555 45678888764

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.87  E-value=7.2e-06  Score=57.78  Aligned_cols=204  Identities=11%  Similarity=0.127  Sum_probs=115.3

Q ss_pred             EeecCcceEEEEEeCCCC-EEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEe
Q 040370           15 VIQDTHNVRSVSFHPSGD-FLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWD   93 (228)
Q Consensus        15 ~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd   93 (228)
                      +.+-...+..++|+|+.+ ++++....+.|..++.+ |+.+.......   .+..-.|++..++.++++.-.++.+.+++
T Consensus        17 l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g---~~D~EgI~y~g~~~~vl~~Er~~~L~~~~   92 (248)
T PF06977_consen   17 LPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDG---FGDYEGITYLGNGRYVLSEERDQRLYIFT   92 (248)
T ss_dssp             -TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS----SSEEEEEE-STTEEEEEETTTTEEEEEE
T ss_pred             CCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCC---CCCceeEEEECCCEEEEEEcCCCcEEEEE
Confidence            334456799999999755 66677778888888864 67666655432   45678899987777777666689999998


Q ss_pred             CCCCc------eeeEEe--cc-cccceeEEEEECCCCCEEEEeeCCCeEEEEEccC---CeeEEEEec------ceeeee
Q 040370           94 GVSAN------CVRSIV--GA-HGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSS---GRLVKQYLG------ATHTQL  155 (228)
Q Consensus        94 ~~~~~------~~~~~~--~~-~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~---~~~~~~~~~------~~~~~~  155 (228)
                      +....      ....+.  .. .+...+-.++|+|.++.|+.+-...-..+|.++.   ...+.....      ......
T Consensus        93 ~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  172 (248)
T PF06977_consen   93 IDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRD  172 (248)
T ss_dssp             E----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS-
T ss_pred             EeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceecc
Confidence            84321      112222  11 1245688999999888888777776677777654   222221111      112234


Q ss_pred             eeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeec--CC------CCCcEEEEeCCCCcEEEEecCCCCEEEe
Q 040370          156 RFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSS--NH------IGAPRWIEHSPAEAAFITCGTDRSVRFW  224 (228)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~--~~------~~~v~~~~~~~~~~~l~s~~~dg~i~vw  224 (228)
                      ...+.++|....+++-+.....+..+| .+|+.+..+.-  +.      -.+.-.|+|.++|++.+++ +-+...+|
T Consensus       173 ~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs-EpNlfy~f  247 (248)
T PF06977_consen  173 LSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVS-EPNLFYRF  247 (248)
T ss_dssp             --EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEE-TTTEEEEE
T ss_pred             ccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEc-CCceEEEe
Confidence            567788888776666666679999999 67776665421  11      1357789999999765554 55544443

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=98.80  E-value=1.5e-06  Score=66.22  Aligned_cols=185  Identities=16%  Similarity=0.152  Sum_probs=112.9

Q ss_pred             ecCcceEEEEEeCCCCEEEEe---cCC-CeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEE-ecCCe--E
Q 040370           17 QDTHNVRSVSFHPSGDFLLAG---TDH-PIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTA-SKDGA--I   89 (228)
Q Consensus        17 ~~~~~v~~~~~~~~~~~l~~~---~~d-~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~--v   89 (228)
                      .....+..-+|+|++..++-.   ... ..+.++++++++.......     .+.-..-+|+|+|+.++-+ ..||.  |
T Consensus       190 ~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~-----~g~~~~P~fspDG~~l~f~~~rdg~~~i  264 (425)
T COG0823         190 DSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNF-----NGNNGAPAFSPDGSKLAFSSSRDGSPDI  264 (425)
T ss_pred             ccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeecc-----CCccCCccCCCCCCEEEEEECCCCCccE
Confidence            345677778899998876643   222 4689999998875554442     3344557899999877644 45665  6


Q ss_pred             EEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeC-CC--eEEEEEccCCeeEEEEecceeeeeeeEEEECCCCc
Q 040370           90 RLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGK-DS--TVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEE  166 (228)
Q Consensus        90 ~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~--~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (228)
                      .+.|+..++..+ +...  .+.-..-.|+|||++++-.+. .|  .|.++|.+.+.. ..+..  .........++|+++
T Consensus       265 y~~dl~~~~~~~-Lt~~--~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~--~~~~~~~p~~SpdG~  338 (425)
T COG0823         265 YLMDLDGKNLPR-LTNG--FGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTF--SGGGNSNPVWSPDGD  338 (425)
T ss_pred             EEEcCCCCccee-cccC--CccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeec--cCCCCcCccCCCCCC
Confidence            666877766443 3332  333346789999998876653 34  477777765544 33332  122223778999999


Q ss_pred             EEEEeeCCCCe--EEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEE
Q 040370          167 FVLSIDEPSNE--IVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFIT  214 (228)
Q Consensus       167 ~~~~~~~~d~~--i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s  214 (228)
                      +++.....+|.  |.+.|+.++.....+  ........-.|.|+++.++.
T Consensus       339 ~i~~~~~~~g~~~i~~~~~~~~~~~~~l--t~~~~~e~ps~~~ng~~i~~  386 (425)
T COG0823         339 KIVFESSSGGQWDIDKNDLASGGKIRIL--TSTYLNESPSWAPNGRMIMF  386 (425)
T ss_pred             EEEEEeccCCceeeEEeccCCCCcEEEc--cccccCCCCCcCCCCceEEE
Confidence            99987754455  777777666643222  22222223345555554443

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.79  E-value=2.1e-07  Score=68.63  Aligned_cols=207  Identities=11%  Similarity=0.071  Sum_probs=136.5

Q ss_pred             EeecCcceEEEEEeCCCCEEEEecC-CCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCC-C-eEE-EEecCCeEE
Q 040370           15 VIQDTHNVRSVSFHPSGDFLLAGTD-HPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTG-G-MYV-TASKDGAIR   90 (228)
Q Consensus        15 ~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~-~l~-~~~~dg~v~   90 (228)
                      +..|...|.+++.+-++-.+.+.+. |..++++|+++-......+....  .+.+. ...+|.. . .++ +.-.+|.+.
T Consensus        49 FraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~l--Pg~a~-wv~skGd~~s~IAVs~~~sg~i~  125 (558)
T KOG0882|consen   49 FRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDL--PGFAE-WVTSKGDKISLIAVSLFKSGKIF  125 (558)
T ss_pred             hHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccccC--CCceE-EecCCCCeeeeEEeecccCCCcE
Confidence            3357788889999999999999777 99999999998665433333211  12221 1222221 1 333 334679999


Q ss_pred             EEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccC------CeeEEEEe-------cceeeeeee
Q 040370           91 LWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSS------GRLVKQYL-------GATHTQLRF  157 (228)
Q Consensus        91 iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~------~~~~~~~~-------~~~~~~~~~  157 (228)
                      ++|-....+.......-+..+|..+.+++.+..+++....|.|.-|....      .+....++       -........
T Consensus       126 VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pt  205 (558)
T KOG0882|consen  126 VVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPT  205 (558)
T ss_pred             EECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCcc
Confidence            99977655333333333388999999999999999999999999998762      11111111       111344567


Q ss_pred             EEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEee-------------------------------cCCC-CCcEEEEe
Q 040370          158 QAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWS-------------------------------SNHI-GAPRWIEH  205 (228)
Q Consensus       158 ~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~-------------------------------~~~~-~~v~~~~~  205 (228)
                      ++.++|++..+...+. |..|++++.++++....+.                               ..|. ..-+.+.|
T Consensus       206 s~Efsp~g~qistl~~-DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~f  284 (558)
T KOG0882|consen  206 SFEFSPDGAQISTLNP-DRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVF  284 (558)
T ss_pred             ceEEccccCcccccCc-ccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEE
Confidence            8899999999998875 8999999999887544331                               0111 23345678


Q ss_pred             CCCCcEEEEecCCCCEEEeee
Q 040370          206 SPAEAAFITCGTDRSVRFWKE  226 (228)
Q Consensus       206 ~~~~~~l~s~~~dg~i~vwd~  226 (228)
                      ...+++|+-++-=| |++.++
T Consensus       285 des~~flly~t~~g-ikvin~  304 (558)
T KOG0882|consen  285 DESGNFLLYGTILG-IKVINL  304 (558)
T ss_pred             cCCCCEEEeeccee-EEEEEe
Confidence            88888888776544 555543

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.76  E-value=7.1e-06  Score=62.87  Aligned_cols=144  Identities=16%  Similarity=0.199  Sum_probs=83.3

Q ss_pred             ecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCC
Q 040370           17 QDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVS   96 (228)
Q Consensus        17 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~   96 (228)
                      ........+.++|+|+++++++ +|.-.|+.....+...         .+.-...+|.+.+ .+|+-...+.|.++.--+
T Consensus        30 ~~~~~p~~ls~npngr~v~V~g-~geY~iyt~~~~r~k~---------~G~g~~~vw~~~n-~yAv~~~~~~I~I~kn~~   98 (443)
T PF04053_consen   30 SCEIYPQSLSHNPNGRFVLVCG-DGEYEIYTALAWRNKA---------FGSGLSFVWSSRN-RYAVLESSSTIKIYKNFK   98 (443)
T ss_dssp             E-SS--SEEEE-TTSSEEEEEE-TTEEEEEETTTTEEEE---------EEE-SEEEE-TSS-EEEEE-TTS-EEEEETTE
T ss_pred             CCCcCCeeEEECCCCCEEEEEc-CCEEEEEEccCCcccc---------cCceeEEEEecCc-cEEEEECCCeEEEEEcCc
Confidence            4455689999999999999854 6777888844433211         3445678898844 577777788999963223


Q ss_pred             CceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCC
Q 040370           97 ANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSN  176 (228)
Q Consensus        97 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  176 (228)
                      .+....+...   ..+..+-.   |..|...+.+ .|.+||..+++.+.++..    ..+..+.|++++.+++..+.  .
T Consensus        99 ~~~~k~i~~~---~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v----~~vk~V~Ws~~g~~val~t~--~  165 (443)
T PF04053_consen   99 NEVVKSIKLP---FSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDV----SAVKYVIWSDDGELVALVTK--D  165 (443)
T ss_dssp             E-TT-----S---S-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS-----E-EEEEE-TTSSEEEEE-S---
T ss_pred             cccceEEcCC---cccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEec----CCCcEEEEECCCCEEEEEeC--C
Confidence            3333344432   22333422   7777766554 899999999999998864    23688999999999998775  5


Q ss_pred             eEEEEEcC
Q 040370          177 EIVIWDAL  184 (228)
Q Consensus       177 ~i~i~d~~  184 (228)
                      .+.+++..
T Consensus       166 ~i~il~~~  173 (443)
T PF04053_consen  166 SIYILKYN  173 (443)
T ss_dssp             SEEEEEE-
T ss_pred             eEEEEEec
Confidence            67776644

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.74  E-value=2.5e-06  Score=66.78  Aligned_cols=134  Identities=15%  Similarity=0.198  Sum_probs=87.2

Q ss_pred             CCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEe-----------------------------------
Q 040370           40 HPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTAS-----------------------------------   84 (228)
Q Consensus        40 d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-----------------------------------   84 (228)
                      .+.+.+.|.++.+.......     .+....++++|+|+++++.+                                   
T Consensus       214 ~~~vSvID~etmeV~~qV~V-----dgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~vkdG  288 (635)
T PRK02888        214 RSLFTAVDAETMEVAWQVMV-----DGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEAVKAG  288 (635)
T ss_pred             eEEEEEEECccceEEEEEEe-----CCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHHHHHhhhCC
Confidence            35566667776655444433     33445677788887776664                                   


Q ss_pred             -----cCCeEEEEeCCC-----CceeeEEecccccceeEEEEECCCCCEEEEee-CCCeEEEEEccCCee----------
Q 040370           85 -----KDGAIRLWDGVS-----ANCVRSIVGAHGTAEATSANFTKDQRFVLSCG-KDSTVKLWEVSSGRL----------  143 (228)
Q Consensus        85 -----~dg~v~iwd~~~-----~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~i~~wd~~~~~~----------  143 (228)
                           .++.|.+.|..+     .+....+..   ......+.++|||+++++++ .+.++.|+|+.+.+.          
T Consensus       289 K~~~V~gn~V~VID~~t~~~~~~~v~~yIPV---GKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~  365 (635)
T PRK02888        289 KFKTIGGSKVPVVDGRKAANAGSALTRYVPV---PKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRD  365 (635)
T ss_pred             CEEEECCCEEEEEECCccccCCcceEEEEEC---CCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccc
Confidence                 124577777776     344555544   45678899999999877665 588999999987553          


Q ss_pred             --EEEEecceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCC
Q 040370          144 --VKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALT  185 (228)
Q Consensus       144 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~  185 (228)
                        ..+..   -........|.++|. .+++-.-|..|..|++..
T Consensus       366 ~vvaeve---vGlGPLHTaFDg~G~-aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        366 AVVAEPE---LGLGPLHTAFDGRGN-AYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             eEEEeec---cCCCcceEEECCCCC-EEEeEeecceeEEEehHH
Confidence              22221   122334567788875 555555589999999876

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=98.74  E-value=3.8e-05  Score=58.27  Aligned_cols=194  Identities=17%  Similarity=0.147  Sum_probs=135.2

Q ss_pred             eEEEEEeCCCCEEE-EecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEec---CCeEEEEeCCCC
Q 040370           22 VRSVSFHPSGDFLL-AGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASK---DGAIRLWDGVSA   97 (228)
Q Consensus        22 v~~~~~~~~~~~l~-~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---dg~v~iwd~~~~   97 (228)
                      -..++.++.+..++ ....++.|.+.|....+.......     ......++++|+++.+..+..   ++.+.+.|..++
T Consensus        76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~v-----G~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~  150 (381)
T COG3391          76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPV-----GLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATN  150 (381)
T ss_pred             ccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeee-----ccCCceEEECCCCCEEEEEecccCCceEEEEeCCCC
Confidence            34677888777544 445568899999777665555443     235678999999987776655   689999999988


Q ss_pred             ceeeEEecccccceeEEEEECCCCCEEEEee-CCCeEEEEEccCCeeEEEEe---cceeeeeeeEEEECCCCcEEEEeeC
Q 040370           98 NCVRSIVGAHGTAEATSANFTKDQRFVLSCG-KDSTVKLWEVSSGRLVKQYL---GATHTQLRFQAVFNDTEEFVLSIDE  173 (228)
Q Consensus        98 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~i~~wd~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~  173 (228)
                      +........  ..+ ..++++|+++.++... .++.|.+.|........ -.   ..........+.+.|++.++.+...
T Consensus       151 ~~~~~~~vG--~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~  226 (381)
T COG3391         151 KVTATIPVG--NTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-GSVGSLVGVGTGPAGIAVDPDGNRVYVAND  226 (381)
T ss_pred             eEEEEEecC--CCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceec-cccccccccCCCCceEEECCCCCEEEEEec
Confidence            888875553  234 8899999999766555 78899999977655443 11   0112334467788999998777666


Q ss_pred             CC--CeEEEEEcCCcceeEE-eecCCCCCcEEEEeCCCCcEEEEecC-CCCEEEee
Q 040370          174 PS--NEIVIWDALTAEKVAK-WSSNHIGAPRWIEHSPAEAAFITCGT-DRSVRFWK  225 (228)
Q Consensus       174 ~d--~~i~i~d~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~s~~~-dg~i~vwd  225 (228)
                      .+  +.+...|..++..... ...+.. ....+..+|+|..+..... .+.+.+-|
T Consensus       227 ~~~~~~v~~id~~~~~v~~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid  281 (381)
T COG3391         227 GSGSNNVLKIDTATGNVTATDLPVGSG-APRGVAVDPAGKAAYVANSQGGTVSVID  281 (381)
T ss_pred             cCCCceEEEEeCCCceEEEeccccccC-CCCceeECCCCCEEEEEecCCCeEEEEe
Confidence            44  6899999988877766 222333 5677889999998877743 35555544

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.72  E-value=5.3e-07  Score=71.80  Aligned_cols=71  Identities=20%  Similarity=0.346  Sum_probs=59.3

Q ss_pred             ceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCC
Q 040370           21 NVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGV   95 (228)
Q Consensus        21 ~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~   95 (228)
                      .+++++|+|..-.|+.|-.-|.+.+|...+.+......   .| ..+|..+.|||+|..++++..-|.|.+|...
T Consensus        61 hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~---th-~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   61 HATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVE---TH-PAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             ehhhhccChHHHHHhhccccceeEEEecCCceeeeecc---CC-CCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence            35679999999899999999999999987755433222   23 8899999999999999999999999999765

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.71  E-value=5.3e-07  Score=72.08  Aligned_cols=150  Identities=13%  Similarity=0.174  Sum_probs=112.1

Q ss_pred             ceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEec---------CCeEEE
Q 040370           21 NVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASK---------DGAIRL   91 (228)
Q Consensus        21 ~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---------dg~v~i   91 (228)
                      .|+-++.  +++.+.+|...|+|.+-|.++.+.+..+..+    .+.|.++..  .|+.|++|+.         |..|+|
T Consensus       179 ~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aH----s~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkV  250 (1118)
T KOG1275|consen  179 GVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIHTFDAH----SGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKV  250 (1118)
T ss_pred             ceEEEEe--cCcEEEeecccceEEeecCCcCceeeeeecc----ccceeeeec--cCCeEEEeecccccccccccchhhh
Confidence            4555554  6889999999999999999999888777654    667766555  6899999874         567899


Q ss_pred             EeCCCCceeeEEecccccceeEEEEECC-CCCEEEEeeCCCeEEEEE---ccCCeeEEEEecceeeeeeeEEEECCCCcE
Q 040370           92 WDGVSANCVRSIVGAHGTAEATSANFTK-DQRFVLSCGKDSTVKLWE---VSSGRLVKQYLGATHTQLRFQAVFNDTEEF  167 (228)
Q Consensus        92 wd~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~~wd---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (228)
                      ||++..+.+..+..+..   ..-+.|+| -...++.++..|...+-|   +.+.. ...+..+.....+..+.+++++..
T Consensus       251 YDLRmmral~PI~~~~~---P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~-~~~~~v~p~~s~i~~fDiSsn~~a  326 (1118)
T KOG1275|consen  251 YDLRMMRALSPIQFPYG---PQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPP-AGVKMVNPNGSGISAFDISSNGDA  326 (1118)
T ss_pred             hhhhhhhccCCcccccC---chhhhhcccccceEEEEecccceeeccccccCCCc-cceeEEccCCCcceeEEecCCCce
Confidence            99999888777766432   24567888 345788888999999999   33321 222222334555888999999999


Q ss_pred             EEEeeCCCCeEEEEEc
Q 040370          168 VLSIDEPSNEIVIWDA  183 (228)
Q Consensus       168 ~~~~~~~d~~i~i~d~  183 (228)
                      ++.+.. +|.|.+|--
T Consensus       327 lafgd~-~g~v~~wa~  341 (1118)
T KOG1275|consen  327 LAFGDH-EGHVNLWAD  341 (1118)
T ss_pred             EEEecc-cCcEeeecC
Confidence            988666 799999973

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=98.71  E-value=2.4e-05  Score=59.25  Aligned_cols=201  Identities=17%  Similarity=0.207  Sum_probs=115.4

Q ss_pred             ceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEe------e----------------------------------eccc
Q 040370           21 NVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYL------S----------------------------------ANVP   60 (228)
Q Consensus        21 ~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~------~----------------------------------~~~~   60 (228)
                      .|+.+.|.++...|++|...|.|.||.....+...      .                                  ....
T Consensus         3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~   82 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL   82 (395)
T ss_dssp             -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred             eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence            58899999999999999999999999875432211      0                                  0000


Q ss_pred             eeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCCCceeeEEeccc------ccceeEEEEECC-----CC---CEEEE
Q 040370           61 EISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAH------GTAEATSANFTK-----DQ---RFVLS  126 (228)
Q Consensus        61 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~------~~~~i~~~~~~~-----~~---~~l~~  126 (228)
                      ... .++|++++.| +=.+++.|.++|.+.|.|+|....+..-....      ....++++.|.-     |+   -.+++
T Consensus        83 ~~~-~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~v  160 (395)
T PF08596_consen   83 DAK-QGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLV  160 (395)
T ss_dssp             ----S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEE
T ss_pred             ecc-CCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEE
Confidence            012 5789999997 44489999999999999998877766543322      244677777762     33   46889


Q ss_pred             eeCCCeEEEEEcc-C--CeeEEEEecc--eeeeeeeEEE-ECC---------------------CCcEEEEeeCCCCeEE
Q 040370          127 CGKDSTVKLWEVS-S--GRLVKQYLGA--THTQLRFQAV-FND---------------------TEEFVLSIDEPSNEIV  179 (228)
Q Consensus       127 ~~~d~~i~~wd~~-~--~~~~~~~~~~--~~~~~~~~~~-~~~---------------------~~~~~~~~~~~d~~i~  179 (228)
                      |...|.+.+|.+. .  +.....+...  .+...+..+. ++.                     ...++++++  +..++
T Consensus       161 GTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvS--e~~ir  238 (395)
T PF08596_consen  161 GTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVS--ESDIR  238 (395)
T ss_dssp             EETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE---SSEEE
T ss_pred             EeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEc--ccceE
Confidence            9999999999875 1  2222222111  1122222222 211                     112444443  48999


Q ss_pred             EEEcCCcceeEEeecCCCCCcEEEEeC-----CCCcEEEEecCCCCEEEeee
Q 040370          180 IWDALTAEKVAKWSSNHIGAPRWIEHS-----PAEAAFITCGTDRSVRFWKE  226 (228)
Q Consensus       180 i~d~~~~~~~~~~~~~~~~~v~~~~~~-----~~~~~l~s~~~dg~i~vwd~  226 (228)
                      ++...+.+...+.. ...-....+.+-     ..+..|++-..+|.|+++.+
T Consensus       239 v~~~~~~k~~~K~~-~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SL  289 (395)
T PF08596_consen  239 VFKPPKSKGAHKSF-DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSL  289 (395)
T ss_dssp             EE-TT---EEEEE--SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEET
T ss_pred             EEeCCCCcccceee-ccccccceEEEEeecccCCceEEEEEECCCcEEEEEC
Confidence            99998888777663 222223334442     35667888889999999976

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=98.67  E-value=1.6e-06  Score=68.42  Aligned_cols=152  Identities=17%  Similarity=0.213  Sum_probs=111.1

Q ss_pred             cceeeEEeCCCCCeEEEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCC------------CEEEEeeCCCeE
Q 040370           66 GAINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQ------------RFVLSCGKDSTV  133 (228)
Q Consensus        66 ~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~------------~~l~~~~~d~~i  133 (228)
                      ..-.++.|+|.| +|+-|+ ...|.+-|.++-+.++.+..|  +..|+.+.|.|..            -.|+++...|.|
T Consensus        16 sN~~A~Dw~~~G-LiAygs-hslV~VVDs~s~q~iqsie~h--~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrI   91 (1062)
T KOG1912|consen   16 SNRNAADWSPSG-LIAYGS-HSLVSVVDSRSLQLIQSIELH--QSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRI   91 (1062)
T ss_pred             ccccccccCccc-eEEEec-CceEEEEehhhhhhhhccccC--ccceeEEEeccCCCchhccCccccceeEEeccccCcE
Confidence            336778999887 455555 468999999999999998876  7889999998732            257788888999


Q ss_pred             EEEEccCCeeEEEEecceeeeeeeEEEECC---CC-cEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCC-C
Q 040370          134 KLWEVSSGRLVKQYLGATHTQLRFQAVFND---TE-EFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSP-A  208 (228)
Q Consensus       134 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~-~  208 (228)
                      .+||...+..+..+..  +...+..++|-+   +. ..+++..+ ...+.+|+..+|+.+-.. ........++.+.| |
T Consensus        92 il~d~~~~s~~~~l~~--~~~~~qdl~W~~~rd~Srd~LlaIh~-ss~lvLwntdtG~k~Wk~-~ys~~iLs~f~~DPfd  167 (1062)
T KOG1912|consen   92 ILVDFVLASVINWLSH--SNDSVQDLCWVPARDDSRDVLLAIHG-SSTLVLWNTDTGEKFWKY-DYSHEILSCFRVDPFD  167 (1062)
T ss_pred             EEEEehhhhhhhhhcC--CCcchhheeeeeccCcchheeEEecC-CcEEEEEEccCCceeecc-ccCCcceeeeeeCCCC
Confidence            9999998877777765  455556666543   34 34444444 589999999999998887 34445667788888 6


Q ss_pred             CcEEEEecCCCCEEEee
Q 040370          209 EAAFITCGTDRSVRFWK  225 (228)
Q Consensus       209 ~~~l~s~~~dg~i~vwd  225 (228)
                      .+.+..-+..|.+.+-+
T Consensus       168 ~rh~~~l~s~g~vl~~~  184 (1062)
T KOG1912|consen  168 SRHFCVLGSKGFVLSCK  184 (1062)
T ss_pred             cceEEEEccCceEEEEe
Confidence            66666666666665543

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.66  E-value=8.9e-06  Score=64.95  Aligned_cols=182  Identities=12%  Similarity=0.118  Sum_probs=114.2

Q ss_pred             cCcc-eEEEEEeCCCCEEEEecCCC-----eEEEEEcccce------EE---eeeccceeeeccceeeEEeCCCCCeEEE
Q 040370           18 DTHN-VRSVSFHPSGDFLLAGTDHP-----IAHLYDVNTFQ------CY---LSANVPEISVNGAINQVRYSSTGGMYVT   82 (228)
Q Consensus        18 ~~~~-v~~~~~~~~~~~l~~~~~d~-----~i~vw~~~~~~------~~---~~~~~~~~~~~~~i~~~~~~~~~~~l~~   82 (228)
                      +... |..+....+.++|++.+.|+     .++||+++.-+      +.   .......+....++.+++.+.+-+.++.
T Consensus        63 ~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~  142 (933)
T KOG2114|consen   63 YEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVC  142 (933)
T ss_pred             cchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEE
Confidence            3444 44443333446777765543     59999987532      22   1111111111567889999999889999


Q ss_pred             EecCCeEEEEeCC--CCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEE
Q 040370           83 ASKDGAIRLWDGV--SANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAV  160 (228)
Q Consensus        83 ~~~dg~v~iwd~~--~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~  160 (228)
                      |-.+|.|..+.-+  ..+-.+....+....+|+.+++..+++.++-+..-..|.+|.+.. +.+.......++....+..
T Consensus       143 Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~g-r~p~~~~ld~~G~~lnCss  221 (933)
T KOG2114|consen  143 GFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSG-RTPSLKVLDNNGISLNCSS  221 (933)
T ss_pred             EecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecC-CCcceeeeccCCccceeee
Confidence            9999999998422  222223333444588999999999888733333456799999974 4422222233666777777


Q ss_pred             ECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEE
Q 040370          161 FNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRW  202 (228)
Q Consensus       161 ~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~  202 (228)
                      +++....++++++  ..+.+||....++...+..+|......
T Consensus       222 ~~~~t~qfIca~~--e~l~fY~sd~~~~cfaf~~g~kk~~~~  261 (933)
T KOG2114|consen  222 FSDGTYQFICAGS--EFLYFYDSDGRGPCFAFEVGEKKEMLV  261 (933)
T ss_pred             cCCCCccEEEecC--ceEEEEcCCCcceeeeecCCCeEEEEE
Confidence            8777765666555  789999988777777774466554433

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.65  E-value=2.6e-05  Score=59.61  Aligned_cols=182  Identities=12%  Similarity=0.039  Sum_probs=109.8

Q ss_pred             CEEEEecCCCeEEEEEcccceEEeeeccceee--e-ccceeeEEeCC--CCCeEEEEecCCeEEEEeCCCCceeeEEecc
Q 040370           32 DFLLAGTDHPIAHLYDVNTFQCYLSANVPEIS--V-NGAINQVRYSS--TGGMYVTASKDGAIRLWDGVSANCVRSIVGA  106 (228)
Q Consensus        32 ~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~--~-~~~i~~~~~~~--~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~  106 (228)
                      ..++.++.+|.+...|.++|+...........  . ......+.-+|  .+..++.++.+|.+.-+|..+++.+-.....
T Consensus       206 ~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~  285 (394)
T PRK11138        206 GGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREYG  285 (394)
T ss_pred             CEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecCC
Confidence            35666777888989999888765544321100  0 00111122233  3456777888999999999999876554332


Q ss_pred             cccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCc
Q 040370          107 HGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTA  186 (228)
Q Consensus       107 ~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~  186 (228)
                         . ...+.  ..+..++.++.++.+..+|..+++.+-........ .......  .+..+++... ||.+...|..+|
T Consensus       286 ---~-~~~~~--~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~-~~~sp~v--~~g~l~v~~~-~G~l~~ld~~tG  355 (394)
T PRK11138        286 ---S-VNDFA--VDGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHR-LLTAPVL--YNGYLVVGDS-EGYLHWINREDG  355 (394)
T ss_pred             ---C-ccCcE--EECCEEEEEcCCCeEEEEECCCCcEEEcccccCCC-cccCCEE--ECCEEEEEeC-CCEEEEEECCCC
Confidence               1 11121  24667888889999999999998775543211111 1111111  2455555444 799999999999


Q ss_pred             ceeEEeecCCCCCcEE-EEeCCCCcEEEEecCCCCEEEeee
Q 040370          187 EKVAKWSSNHIGAPRW-IEHSPAEAAFITCGTDRSVRFWKE  226 (228)
Q Consensus       187 ~~~~~~~~~~~~~v~~-~~~~~~~~~l~s~~~dg~i~vwd~  226 (228)
                      +.+.+.... ...+.+ ..+  .+..|+.++.||.+..+++
T Consensus       356 ~~~~~~~~~-~~~~~s~P~~--~~~~l~v~t~~G~l~~~~~  393 (394)
T PRK11138        356 RFVAQQKVD-SSGFLSEPVV--ADDKLLIQARDGTVYAITR  393 (394)
T ss_pred             CEEEEEEcC-CCcceeCCEE--ECCEEEEEeCCceEEEEeC
Confidence            988776332 222222 122  3446888899999988775

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.64  E-value=1.1e-05  Score=61.74  Aligned_cols=140  Identities=13%  Similarity=0.122  Sum_probs=79.5

Q ss_pred             ccceeeEEeCCCCCeEEEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeE
Q 040370           65 NGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLV  144 (228)
Q Consensus        65 ~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~  144 (228)
                      .-....+.++|+|+.++.+ .||...|+.....+...       .+......|.+.++ +|+-...++|.++.--+.+..
T Consensus        32 ~~~p~~ls~npngr~v~V~-g~geY~iyt~~~~r~k~-------~G~g~~~vw~~~n~-yAv~~~~~~I~I~kn~~~~~~  102 (443)
T PF04053_consen   32 EIYPQSLSHNPNGRFVLVC-GDGEYEIYTALAWRNKA-------FGSGLSFVWSSRNR-YAVLESSSTIKIYKNFKNEVV  102 (443)
T ss_dssp             SS--SEEEE-TTSSEEEEE-ETTEEEEEETTTTEEEE-------EEE-SEEEE-TSSE-EEEE-TTS-EEEEETTEE-TT
T ss_pred             CcCCeeEEECCCCCEEEEE-cCCEEEEEEccCCcccc-------cCceeEEEEecCcc-EEEEECCCeEEEEEcCccccc
Confidence            4457889999999988884 57888888743333322       22335678888554 666666888999742222332


Q ss_pred             EEEecceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEe
Q 040370          145 KQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFW  224 (228)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vw  224 (228)
                      ..+....   .+..+. .  |..+...+.  +.|.+||+.+++.+.++.   -.+|..+.|++++.+++..+.+ .+.+.
T Consensus       103 k~i~~~~---~~~~If-~--G~LL~~~~~--~~i~~yDw~~~~~i~~i~---v~~vk~V~Ws~~g~~val~t~~-~i~il  170 (443)
T PF04053_consen  103 KSIKLPF---SVEKIF-G--GNLLGVKSS--DFICFYDWETGKLIRRID---VSAVKYVIWSDDGELVALVTKD-SIYIL  170 (443)
T ss_dssp             -----SS----EEEEE----SSSEEEEET--TEEEEE-TTT--EEEEES---S-E-EEEEE-TTSSEEEEE-S--SEEEE
T ss_pred             eEEcCCc---ccceEE-c--CcEEEEECC--CCEEEEEhhHcceeeEEe---cCCCcEEEEECCCCEEEEEeCC-eEEEE
Confidence            2343221   122222 2  777777654  689999999999999882   2348999999999999998866 46665


Q ss_pred             e
Q 040370          225 K  225 (228)
Q Consensus       225 d  225 (228)
                      +
T Consensus       171 ~  171 (443)
T PF04053_consen  171 K  171 (443)
T ss_dssp             E
T ss_pred             E
Confidence            5

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.62  E-value=1.5e-06  Score=67.61  Aligned_cols=120  Identities=16%  Similarity=0.108  Sum_probs=90.9

Q ss_pred             cCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCCC
Q 040370           18 DTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSA   97 (228)
Q Consensus        18 ~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~   97 (228)
                      +...|.--+++..+++++.|+.-|.+++|+-..++.......  +. .+.+..+..+++..++|.|+..|.|.++-++.+
T Consensus        32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~--~~-~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~  108 (726)
T KOG3621|consen   32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNE--GA-TGITCVRSVSSVEYLVAAGTASGRVSVFQLNKE  108 (726)
T ss_pred             CcceEEEEEeecCCceEEEecccceEEEEecCchhhhccccc--Cc-cceEEEEEecchhHhhhhhcCCceEEeehhhcc
Confidence            445566566677899999999999999999887764332221  12 456667788999999999999999999988764


Q ss_pred             ceeeEE-e---cccccceeEEEEECCCCCEEEEeeCCCeEEEEEccC
Q 040370           98 NCVRSI-V---GAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSS  140 (228)
Q Consensus        98 ~~~~~~-~---~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~  140 (228)
                      .+.... .   ...++..|++++|++++..+++|...|.|..-.+..
T Consensus       109 ~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen  109 LPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS  155 (726)
T ss_pred             CCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence            332211 1   112378999999999999999999999999888776

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.59  E-value=5.6e-07  Score=69.12  Aligned_cols=96  Identities=17%  Similarity=0.303  Sum_probs=77.9

Q ss_pred             cCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeecccee-eEEeCCCCCeEEEEecCCeEEEEeCCC
Q 040370           18 DTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAIN-QVRYSSTGGMYVTASKDGAIRLWDGVS   96 (228)
Q Consensus        18 ~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~l~~~~~dg~v~iwd~~~   96 (228)
                      -...|.-+.|+|.-..+|.+..+|.|.+..+. .+.+..+..+    ...++ +++|.|||+.++.|-.||+|++-|+++
T Consensus        19 l~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p----~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~   93 (665)
T KOG4640|consen   19 LPINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIP----GENVTASLCWRPDGKLLAVGFKDGTIRLHDVEK   93 (665)
T ss_pred             cccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCC----CCccceeeeecCCCCEEEEEecCCeEEEEEccC
Confidence            35678889999999999999999999999988 5555666544    44455 999999999999999999999999999


Q ss_pred             CceeeEEecccccceeEEEEECC
Q 040370           97 ANCVRSIVGAHGTAEATSANFTK  119 (228)
Q Consensus        97 ~~~~~~~~~~~~~~~i~~~~~~~  119 (228)
                      +..+....... ...|.++.|.+
T Consensus        94 ~~~l~~~~~s~-e~~is~~~w~~  115 (665)
T KOG4640|consen   94 GGRLVSFLFSV-ETDISKGIWDR  115 (665)
T ss_pred             CCceecccccc-ccchheeeccc
Confidence            98877643222 56778888863

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.59  E-value=6.4e-05  Score=52.30  Aligned_cols=123  Identities=12%  Similarity=0.047  Sum_probs=88.8

Q ss_pred             CCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCCCceeeEEecccccc
Q 040370           31 GDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTA  110 (228)
Q Consensus        31 ~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~  110 (228)
                      ..+++.|+..+.+.--|..+|+.......     ..+|.+-+.- -|++++.|...|.+++.+.++|+....+.... ..
T Consensus        23 kT~v~igSHs~~~~avd~~sG~~~We~il-----g~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~-~v   95 (354)
T KOG4649|consen   23 KTLVVIGSHSGIVIAVDPQSGNLIWEAIL-----GVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILE-TV   95 (354)
T ss_pred             ceEEEEecCCceEEEecCCCCcEEeehhh-----CceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehh-hh
Confidence            45677888899999999999987765443     3334333322 46789999999999999999998888776642 22


Q ss_pred             eeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECC
Q 040370          111 EATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFND  163 (228)
Q Consensus       111 ~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (228)
                      .+ .....+++..+..|+.|++.+..|.++...+.+.+-  ........+..|
T Consensus        96 k~-~a~~d~~~glIycgshd~~~yalD~~~~~cVykskc--gG~~f~sP~i~~  145 (354)
T KOG4649|consen   96 KV-RAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKC--GGGTFVSPVIAP  145 (354)
T ss_pred             cc-ceEEcCCCceEEEecCCCcEEEecccccceEEeccc--CCceeccceecC
Confidence            22 244577899999999999999999999888877654  223333444455

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=98.57  E-value=6e-05  Score=55.95  Aligned_cols=179  Identities=12%  Similarity=0.080  Sum_probs=104.5

Q ss_pred             CeEEEEEcccceEEeeeccceeeeccceeeEEeCCC----CCeEEEEec----------CCeEEEEeCCCC----ceeeE
Q 040370           41 PIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSST----GGMYVTASK----------DGAIRLWDGVSA----NCVRS  102 (228)
Q Consensus        41 ~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~l~~~~~----------dg~v~iwd~~~~----~~~~~  102 (228)
                      ..|++.|..+.+.+.........+...+..+.+..+    ..+++.|..          .|.|.++++...    ..+..
T Consensus         2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~   81 (321)
T PF03178_consen    2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL   81 (321)
T ss_dssp             -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred             cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence            367888888877766655544222223334445432    457776653          289999999884    23333


Q ss_pred             EecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCe-eEEEEecceeeeeeeEEEECCCCcEEEEeeCCCCeEEEE
Q 040370          103 IVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGR-LVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIW  181 (228)
Q Consensus       103 ~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~  181 (228)
                      +......++|++++-- ++. |+.+ .++.|.+|++...+ ....-... ....+.++.  ..+++++++... ..+.++
T Consensus        82 i~~~~~~g~V~ai~~~-~~~-lv~~-~g~~l~v~~l~~~~~l~~~~~~~-~~~~i~sl~--~~~~~I~vgD~~-~sv~~~  154 (321)
T PF03178_consen   82 IHSTEVKGPVTAICSF-NGR-LVVA-VGNKLYVYDLDNSKTLLKKAFYD-SPFYITSLS--VFKNYILVGDAM-KSVSLL  154 (321)
T ss_dssp             EEEEEESS-EEEEEEE-TTE-EEEE-ETTEEEEEEEETTSSEEEEEEE--BSSSEEEEE--EETTEEEEEESS-SSEEEE
T ss_pred             EEEEeecCcceEhhhh-CCE-EEEe-ecCEEEEEEccCcccchhhheec-ceEEEEEEe--ccccEEEEEEcc-cCEEEE
Confidence            3222336788888755 344 4444 35789999998877 33332221 222333433  336688887664 667766


Q ss_pred             EcCC-cceeEEe-ecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeee
Q 040370          182 DALT-AEKVAKW-SSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKE  226 (228)
Q Consensus       182 d~~~-~~~~~~~-~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~  226 (228)
                      ..+. ...+..+ .......++++.|-++++.++.+..+|.+.++..
T Consensus       155 ~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~  201 (321)
T PF03178_consen  155 RYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRY  201 (321)
T ss_dssp             EEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE
T ss_pred             EEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEE
Confidence            4443 2222222 2234556888888866678999999999998865

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.56  E-value=1.3e-06  Score=63.67  Aligned_cols=75  Identities=15%  Similarity=0.193  Sum_probs=64.6

Q ss_pred             ccceeeEEeCCCCC-eEEEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCC-CCEEEEeeCCCeEEEEEccCCe
Q 040370           65 NGAINQVRYSSTGG-MYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKD-QRFVLSCGKDSTVKLWEVSSGR  142 (228)
Q Consensus        65 ~~~i~~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~d~~i~~wd~~~~~  142 (228)
                      ...|..++|+|..+ ++..++.+..|+|.|+++......+..   ...+++++|.-+ .++++.|...|.|.+||++..+
T Consensus       193 g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a---~~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~  269 (463)
T KOG1645|consen  193 GSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIA---YNQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPE  269 (463)
T ss_pred             chhhhhhccCccccceeeeeccCceEEEEecccceeeeheec---cCCceeeeeccCCcceeEEeccCceEEEEEccCCC
Confidence            67899999999766 788999999999999999988888776   468899999885 4678889999999999999754

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.55  E-value=4.4e-05  Score=58.37  Aligned_cols=183  Identities=8%  Similarity=0.012  Sum_probs=101.6

Q ss_pred             CEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCC--CCCeEEEEecCCeEEEEeCCCCceeeEEeccccc
Q 040370           32 DFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSS--TGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGT  109 (228)
Q Consensus        32 ~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~  109 (228)
                      ..++.++.++.+..+|.++|+.+...........  ... .-+|  .+..++.++.+|.+...|..+++...........
T Consensus       161 ~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~--~~~-~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~  237 (394)
T PRK11138        161 GLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLT--LRG-ESAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPT  237 (394)
T ss_pred             CEEEEECCCCEEEEEEccCCCEeeeecCCCCccc--ccC-CCCCEEECCEEEEEcCCCEEEEEEccCChhhheeccccCC
Confidence            3455566677777777777776655543210000  000 0111  1235667778899999999988876554321100


Q ss_pred             --c---eeEEEEECC--CCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEE
Q 040370          110 --A---EATSANFTK--DQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWD  182 (228)
Q Consensus       110 --~---~i~~~~~~~--~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d  182 (228)
                        .   ....+..+|  .+..++.++.++.+..+|..+++.+-+.....    ...+.  ..+..+++... ++.+..+|
T Consensus       238 ~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~----~~~~~--~~~~~vy~~~~-~g~l~ald  310 (394)
T PRK11138        238 GATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREYGS----VNDFA--VDGGRIYLVDQ-NDRVYALD  310 (394)
T ss_pred             CccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecCCC----ccCcE--EECCEEEEEcC-CCeEEEEE
Confidence              0   011111223  35567778889999999999998765543211    11111  13455555554 69999999


Q ss_pred             cCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeee
Q 040370          183 ALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKE  226 (228)
Q Consensus       183 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~  226 (228)
                      ..+++.+-...........+...  .+.+|+.++.||.+.+.|.
T Consensus       311 ~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld~  352 (394)
T PRK11138        311 TRGGVELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWINR  352 (394)
T ss_pred             CCCCcEEEcccccCCCcccCCEE--ECCEEEEEeCCCEEEEEEC
Confidence            99988765432111111111111  2456677778888877664

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.54  E-value=9.3e-07  Score=70.48  Aligned_cols=119  Identities=9%  Similarity=0.137  Sum_probs=89.1

Q ss_pred             EEeecCcceEEEEEeCCCCEEEEec----CCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeE
Q 040370           14 RVIQDTHNVRSVSFHPSGDFLLAGT----DHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAI   89 (228)
Q Consensus        14 ~~~~~~~~v~~~~~~~~~~~l~~~~----~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v   89 (228)
                      ++......-+-..|+|...+||+++    ..|.|.||- ++|++......     .-.+++++|+|..-.|+.|-.-|.+
T Consensus        10 E~~Dsdavsti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~-----P~hatSLCWHpe~~vLa~gwe~g~~   83 (1416)
T KOG3617|consen   10 EFLDSDAVSTISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVTY-----PVHATSLCWHPEEFVLAQGWEMGVS   83 (1416)
T ss_pred             ecccccccccccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCccccc-----ceehhhhccChHHHHHhhcccccee
Confidence            3333344445578999999998775    467888884 55664333322     2235779999998889999999999


Q ss_pred             EEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccC
Q 040370           90 RLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSS  140 (228)
Q Consensus        90 ~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~  140 (228)
                      .+|...+.+.-.....|  +.+|..+.|+++|..++++..-|.+.+|....
T Consensus        84 ~v~~~~~~e~htv~~th--~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~  132 (1416)
T KOG3617|consen   84 DVQKTNTTETHTVVETH--PAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDV  132 (1416)
T ss_pred             EEEecCCceeeeeccCC--CCCceeEEecCCCCeEEEcCCCceeEEEEeee
Confidence            99997765544444333  88999999999999999999999999998763

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=98.49  E-value=1.4e-05  Score=61.05  Aligned_cols=145  Identities=11%  Similarity=0.070  Sum_probs=94.7

Q ss_pred             ccceeeEEeCCCCCeEEEEe---cC-CeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEE-eeCCCe--EEEEE
Q 040370           65 NGAINQVRYSSTGGMYVTAS---KD-GAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLS-CGKDST--VKLWE  137 (228)
Q Consensus        65 ~~~i~~~~~~~~~~~l~~~~---~d-g~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-~~~d~~--i~~wd  137 (228)
                      ...+..-+|+|+++.++..+   .. ..+.++|+++++.......   ...-...+|+|||+.|+- ...||.  |+++|
T Consensus       192 ~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~---~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~d  268 (425)
T COG0823         192 GSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNF---NGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMD  268 (425)
T ss_pred             CcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeecc---CCccCCccCCCCCCEEEEEECCCCCccEEEEc
Confidence            44566778999988665442   22 4699999999887766653   334456789999987664 445554  77788


Q ss_pred             ccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCCe--EEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEe
Q 040370          138 VSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNE--IVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITC  215 (228)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~--i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~  215 (228)
                      +...+..+ +..  .........|+|+|++++.++...|.  |.+++...+......  ...+.-..-.|+|+|++++..
T Consensus       269 l~~~~~~~-Lt~--~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT--~~~~~~~~p~~SpdG~~i~~~  343 (425)
T COG0823         269 LDGKNLPR-LTN--GFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLT--FSGGGNSNPVWSPDGDKIVFE  343 (425)
T ss_pred             CCCCccee-ccc--CCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEee--ccCCCCcCccCCCCCCEEEEE
Confidence            87766333 332  23333478899999999888776665  555565555442222  222222267899999998877


Q ss_pred             cC
Q 040370          216 GT  217 (228)
Q Consensus       216 ~~  217 (228)
                      +.
T Consensus       344 ~~  345 (425)
T COG0823         344 SS  345 (425)
T ss_pred             ec
Confidence            74

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.49  E-value=8.4e-05  Score=61.82  Aligned_cols=157  Identities=13%  Similarity=0.143  Sum_probs=105.9

Q ss_pred             ccceeeEEeCCCCCeEEEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEc----cC
Q 040370           65 NGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEV----SS  140 (228)
Q Consensus        65 ~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~----~~  140 (228)
                      ...|.++.|..+.+.++.+..+|.|.+-|.++......-..   ...|.+++|+||++.++..+.++++.+-+-    -.
T Consensus        68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~v---d~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~  144 (1265)
T KOG1920|consen   68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELEIVGNV---DNGISAASWSPDEELLALITGRQTLLFMTKDFEPIA  144 (1265)
T ss_pred             CcceEEEEEecccceEEEEecCCcEEEEcccccceeeeeec---cCceEEEeecCCCcEEEEEeCCcEEEEEeccccchh
Confidence            45899999999999999999999999998877654332222   567999999999999998888887766432    11


Q ss_pred             C-------------------eeEEEEecce-------------------eeeeeeEEEECCCCcEEEEee---CCC-CeE
Q 040370          141 G-------------------RLVKQYLGAT-------------------HTQLRFQAVFNDTEEFVLSID---EPS-NEI  178 (228)
Q Consensus       141 ~-------------------~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~---~~d-~~i  178 (228)
                      .                   +.-..+.+..                   ....-..+.|..+|.+++++.   ..+ +.|
T Consensus       145 E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~Rki  224 (1265)
T KOG1920|consen  145 EKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKI  224 (1265)
T ss_pred             ccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeE
Confidence            1                   1111121100                   011224588999999988743   223 799


Q ss_pred             EEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEec---CCCCEEEeee
Q 040370          179 VIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCG---TDRSVRFWKE  226 (228)
Q Consensus       179 ~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~---~dg~i~vwd~  226 (228)
                      ++||.. |..-..- ....+.-.+++|-|.|..+++-.   .|+.|.+|..
T Consensus       225 rV~drE-g~Lns~s-e~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffEr  273 (1265)
T KOG1920|consen  225 RVYDRE-GALNSTS-EPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFER  273 (1265)
T ss_pred             EEeccc-chhhccc-CcccccccceeecCCCCeEeeeeecCCCCcEEEEec
Confidence            999965 4333222 33445556799999999988754   4566777753

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=98.48  E-value=1.7e-08  Score=77.35  Aligned_cols=164  Identities=14%  Similarity=0.190  Sum_probs=108.2

Q ss_pred             eecCcceEEEEEeC-CCCEEEEec----CCCeEEEEEcccc--eEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCe
Q 040370           16 IQDTHNVRSVSFHP-SGDFLLAGT----DHPIAHLYDVNTF--QCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGA   88 (228)
Q Consensus        16 ~~~~~~v~~~~~~~-~~~~l~~~~----~d~~i~vw~~~~~--~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~   88 (228)
                      .++..+.++++|++ |.+.||+|-    .|..+.|||+.++  .+......... ......+++|..+.+.+++|.....
T Consensus        99 p~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~-~l~gqns~cwlrd~klvlaGm~sr~  177 (783)
T KOG1008|consen   99 PGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSS-TLDGQNSVCWLRDTKLVLAGMTSRS  177 (783)
T ss_pred             ccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccc-cccCccccccccCcchhhcccccch
Confidence            45678899999999 778888774    3678999999886  22222222111 1445668899988899999999999


Q ss_pred             EEEEeCCCCc-eeeEEecccccceeEEEEECC-CCCEEEEeeCCCeEEEEE-ccCCee-EEEEec--ceeeeeeeEEEEC
Q 040370           89 IRLWDGVSAN-CVRSIVGAHGTAEATSANFTK-DQRFVLSCGKDSTVKLWE-VSSGRL-VKQYLG--ATHTQLRFQAVFN  162 (228)
Q Consensus        89 v~iwd~~~~~-~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~~wd-~~~~~~-~~~~~~--~~~~~~~~~~~~~  162 (228)
                      ++++|++... ....+.    ...+..+...| .++|+++-. |+.|.+|| .++-+. +..+..  .........++|.
T Consensus       178 ~~ifdlRqs~~~~~svn----Tk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~ayc  252 (783)
T KOG1008|consen  178 VHIFDLRQSLDSVSSVN----TKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYC  252 (783)
T ss_pred             hhhhhhhhhhhhhhhhh----hhhcccceecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEec
Confidence            9999998432 222222    33566777888 777777665 99999999 443222 211111  1123357788888


Q ss_pred             CCCcEEEEee-CCCCeEEEEEcCC
Q 040370          163 DTEEFVLSID-EPSNEIVIWDALT  185 (228)
Q Consensus       163 ~~~~~~~~~~-~~d~~i~i~d~~~  185 (228)
                      |...-++++. .+.++|++||+..
T Consensus       253 Ptrtglla~l~RdS~tIrlydi~~  276 (783)
T KOG1008|consen  253 PTRTGLLAVLSRDSITIRLYDICV  276 (783)
T ss_pred             cCCcchhhhhccCcceEEEecccc
Confidence            8765444433 3458899999853

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=98.40  E-value=8.7e-05  Score=44.89  Aligned_cols=100  Identities=15%  Similarity=0.238  Sum_probs=67.7

Q ss_pred             eEEEEEeC-CC---CEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCCC
Q 040370           22 VRSVSFHP-SG---DFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSA   97 (228)
Q Consensus        22 v~~~~~~~-~~---~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~   97 (228)
                      |+++++.. ++   +.|++|+.|..|++|+-+.  .+.....     .+.|+++.-... ..|+.+..+|+|-+|+-  .
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e--~~~Ei~e-----~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~--~   71 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE--IVAEITE-----TDKVTSLCSLGG-GRFAYALANGTVGVYDR--S   71 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc--EEEEEec-----ccceEEEEEcCC-CEEEEEecCCEEEEEeC--c
Confidence            67777765 32   6899999999999998653  3333332     567888887765 56999999999999985  2


Q ss_pred             ceeeEEecccccceeEEEEECC-C--C-CEEEEeeCCCeEE
Q 040370           98 NCVRSIVGAHGTAEATSANFTK-D--Q-RFVLSCGKDSTVK  134 (228)
Q Consensus        98 ~~~~~~~~~~~~~~i~~~~~~~-~--~-~~l~~~~~d~~i~  134 (228)
                      +.+...+.   +..+.++.+.. +  | ..|++|-.+|.|-
T Consensus        72 ~RlWRiKS---K~~~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   72 QRLWRIKS---KNQVTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             ceeeeecc---CCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence            33333333   22355554443 3  2 3689999998774

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=98.37  E-value=8.2e-05  Score=60.55  Aligned_cols=144  Identities=5%  Similarity=-0.067  Sum_probs=91.3

Q ss_pred             CeEEEE-ecCCeEEEEeCCCCceeeEEecccccceeEEEEECC-----CCCEEEEeeCCCeEEEEEccCCe-eEEEEecc
Q 040370           78 GMYVTA-SKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTK-----DQRFVLSCGKDSTVKLWEVSSGR-LVKQYLGA  150 (228)
Q Consensus        78 ~~l~~~-~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~-----~~~~l~~~~~d~~i~~wd~~~~~-~~~~~~~~  150 (228)
                      ++|+.- .....|+-.|++.|+.+..+..+. ..+|..++-..     +....+.|-.+..+..||.|-.. .+..-..+
T Consensus       494 ~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~-~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k  572 (794)
T PF08553_consen  494 NMILLDPNNPNKLYKMDLERGKVVEEWKVHD-DIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSK  572 (794)
T ss_pred             ceEeecCCCCCceEEEecCCCcEEEEeecCC-CcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeecccc
Confidence            344433 345789999999999999998864 33455443221     13345677788899999998642 22111111


Q ss_pred             --eeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeee
Q 040370          151 --THTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKE  226 (228)
Q Consensus       151 --~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~  226 (228)
                        .......+++...+ .+++++ +.+|.||+|| +.+....+...+-..+|..|..+.||+++++.+ +..+.+.+.
T Consensus       573 ~Y~~~~~Fs~~aTt~~-G~iavg-s~~G~IRLyd-~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t  646 (794)
T PF08553_consen  573 QYSSKNNFSCFATTED-GYIAVG-SNKGDIRLYD-RLGKRAKTALPGLGDPIIGIDVTADGKWILATC-KTYLLLIDT  646 (794)
T ss_pred             ccccCCCceEEEecCC-ceEEEE-eCCCcEEeec-ccchhhhhcCCCCCCCeeEEEecCCCcEEEEee-cceEEEEEE
Confidence              12223344444444 445553 4479999999 455555555567788999999999999887665 445666654

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=98.37  E-value=0.00045  Score=52.49  Aligned_cols=197  Identities=12%  Similarity=0.103  Sum_probs=104.5

Q ss_pred             ecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccce----eeeccceeeEEeCC-----CC---CeEEEEe
Q 040370           17 QDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPE----ISVNGAINQVRYSS-----TG---GMYVTAS   84 (228)
Q Consensus        17 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~----~~~~~~i~~~~~~~-----~~---~~l~~~~   84 (228)
                      ...++|++++.| |=-++|.|..+|.+.|.|++....+.......    ......++++.|.-     |+   -.+++|.
T Consensus        84 ~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGT  162 (395)
T PF08596_consen   84 AKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGT  162 (395)
T ss_dssp             --S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEE
T ss_pred             ccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEEe
Confidence            457899999997 55699999999999999998877665533322    11145688888862     22   3788999


Q ss_pred             cCCeEEEEeCCC---CceeeEEecc--cccceeEEEE-ECCC-C-------------------CEEEEeeCCCeEEEEEc
Q 040370           85 KDGAIRLWDGVS---ANCVRSIVGA--HGTAEATSAN-FTKD-Q-------------------RFVLSCGKDSTVKLWEV  138 (228)
Q Consensus        85 ~dg~v~iwd~~~---~~~~~~~~~~--~~~~~i~~~~-~~~~-~-------------------~~l~~~~~d~~i~~wd~  138 (228)
                      ..|.+.+|.+.-   +.....+...  .+..++..+. ++.+ +                   +-++....+..++++..
T Consensus       163 n~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~  242 (395)
T PF08596_consen  163 NSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFKP  242 (395)
T ss_dssp             TTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-T
T ss_pred             CCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEeC
Confidence            999999998751   2111111111  1134444433 3222 0                   12344445678999999


Q ss_pred             cCCeeEEEEecceeeeeeeEEEEC-----CCCcEEEEeeCCCCeEEEEEcCCcceeEEeecC---CCCCcEEEEeCCCCc
Q 040370          139 SSGRLVKQYLGATHTQLRFQAVFN-----DTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSN---HIGAPRWIEHSPAEA  210 (228)
Q Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~---~~~~v~~~~~~~~~~  210 (228)
                      .+.+...+...  .......+.+-     ..+..+++.. .+|.+++|.+...+.+......   ....+....++++|.
T Consensus       243 ~~~k~~~K~~~--~~~~~~~~~vv~~~~~~~~~~Lv~l~-~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis~~Gd  319 (395)
T PF08596_consen  243 PKSKGAHKSFD--DPFLCSSASVVPTISRNGGYCLVCLF-NNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSISRNGD  319 (395)
T ss_dssp             T---EEEEE-S--S-EEEEEEEEEEEE-EEEEEEEEEEE-TTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-TTS-
T ss_pred             CCCcccceeec--cccccceEEEEeecccCCceEEEEEE-CCCcEEEEECCCchHhhcccCCCccccccccccEECCCCC
Confidence            88777665542  22222233332     2333444444 4799999999998888776322   122345567788888


Q ss_pred             EEEEecC
Q 040370          211 AFITCGT  217 (228)
Q Consensus       211 ~l~s~~~  217 (228)
                      .++-.|.
T Consensus       320 i~~~~gp  326 (395)
T PF08596_consen  320 IFYWTGP  326 (395)
T ss_dssp             EEEE-SS
T ss_pred             EEEEeCc
Confidence            7766654

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.36  E-value=0.00042  Score=52.22  Aligned_cols=193  Identities=13%  Similarity=0.109  Sum_probs=106.8

Q ss_pred             eCCCCEEEEec---------CCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCCCc
Q 040370           28 HPSGDFLLAGT---------DHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSAN   98 (228)
Q Consensus        28 ~~~~~~l~~~~---------~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~   98 (228)
                      |||+++++...         ..+.+.++|+++++.......     ...+....|+|+|+.++... ++.|.+.+..+++
T Consensus         1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-----~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~   74 (353)
T PF00930_consen    1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-----PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQ   74 (353)
T ss_dssp             -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-----ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSE
T ss_pred             CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-----ccccccceeecCCCeeEEEe-cCceEEEECCCCC
Confidence            57787777632         246789999999775443332     46788999999999888775 6789999987774


Q ss_pred             eeeEEecccc---------------cceeEEEEECCCCCEEEEeeCC-Ce------------------------------
Q 040370           99 CVRSIVGAHG---------------TAEATSANFTKDQRFVLSCGKD-ST------------------------------  132 (228)
Q Consensus        99 ~~~~~~~~~~---------------~~~i~~~~~~~~~~~l~~~~~d-~~------------------------------  132 (228)
                      ..+.......               -..-..+.|+||+++|+....| ..                              
T Consensus        75 ~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~  154 (353)
T PF00930_consen   75 ETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDP  154 (353)
T ss_dssp             EEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS-
T ss_pred             eEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCc
Confidence            4332221100               0123568899999988866432 11                              


Q ss_pred             -----EEEEEccCCeeEEEEec---ceeeeeeeEEEECCCCc-EEEEeeCCC---CeEEEEEcCCcceeEEeecCCCCC-
Q 040370          133 -----VKLWEVSSGRLVKQYLG---ATHTQLRFQAVFNDTEE-FVLSIDEPS---NEIVIWDALTAEKVAKWSSNHIGA-  199 (228)
Q Consensus       133 -----i~~wd~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~-~~~~~~~~d---~~i~i~d~~~~~~~~~~~~~~~~~-  199 (228)
                           +.++|+.+++....-..   ......+..+.|.+++. .++.....+   ..+.+.|..++...........+. 
T Consensus       155 np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv  234 (353)
T PF00930_consen  155 NPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWV  234 (353)
T ss_dssp             --EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSS
T ss_pred             CCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcce
Confidence                 33344444432211100   11344566778888887 433333222   346667777765543332222222 


Q ss_pred             --cEEEEeC-CC-CcEEEEecCCCCEEEeee
Q 040370          200 --PRWIEHS-PA-EAAFITCGTDRSVRFWKE  226 (228)
Q Consensus       200 --v~~~~~~-~~-~~~l~s~~~dg~i~vwd~  226 (228)
                        -....+. ++ +.+|.....||--.|+-+
T Consensus       235 ~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~  265 (353)
T PF00930_consen  235 DVYDPPHFLGPDGNEFLWISERDGYRHLYLY  265 (353)
T ss_dssp             SSSSEEEE-TTTSSEEEEEEETTSSEEEEEE
T ss_pred             eeecccccccCCCCEEEEEEEcCCCcEEEEE
Confidence              2345554 54 445555557776666543

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=98.35  E-value=0.00056  Score=52.04  Aligned_cols=164  Identities=13%  Similarity=0.147  Sum_probs=118.1

Q ss_pred             cceEEEEEeCCCCEEEEecC---CCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEe-cCCeEEEEeCC
Q 040370           20 HNVRSVSFHPSGDFLLAGTD---HPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTAS-KDGAIRLWDGV   95 (228)
Q Consensus        20 ~~v~~~~~~~~~~~l~~~~~---d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~v~iwd~~   95 (228)
                      .....++++|+++.+.++..   ++.+.+.|..+.+........    ..+ ..+++.|+|+.++... .++.|.+.|.+
T Consensus       116 ~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG----~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~  190 (381)
T COG3391         116 LGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVG----NTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTS  190 (381)
T ss_pred             cCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecC----CCc-ceEEECCCCCeEEEEecCCCeEEEEeCC
Confidence            36678999999988876654   688999998888876663321    223 8899999999666555 78999999977


Q ss_pred             CCceee-E----EecccccceeEEEEECCCCCEEEEeeCC---CeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcE
Q 040370           96 SANCVR-S----IVGAHGTAEATSANFTKDQRFVLSCGKD---STVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEF  167 (228)
Q Consensus        96 ~~~~~~-~----~~~~~~~~~i~~~~~~~~~~~l~~~~~d---~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (228)
                      .....+ .    ...   ......+.++|+++++......   +.+...|..++.....-...... ....+...|++.+
T Consensus       191 ~~~v~~~~~~~~~~~---~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~-~~~~v~~~p~g~~  266 (381)
T COG3391         191 GNSVVRGSVGSLVGV---GTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSG-APRGVAVDPAGKA  266 (381)
T ss_pred             Ccceecccccccccc---CCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccC-CCCceeECCCCCE
Confidence            665543 1    111   2334678899999976665544   58999999887766552222122 4567888999999


Q ss_pred             EEEeeCCCCeEEEEEcCCcceeEEe
Q 040370          168 VLSIDEPSNEIVIWDALTAEKVAKW  192 (228)
Q Consensus       168 ~~~~~~~d~~i~i~d~~~~~~~~~~  192 (228)
                      +.+.....+.+.+.|..+.......
T Consensus       267 ~yv~~~~~~~V~vid~~~~~v~~~~  291 (381)
T COG3391         267 AYVANSQGGTVSVIDGATDRVVKTG  291 (381)
T ss_pred             EEEEecCCCeEEEEeCCCCceeeee
Confidence            9888666689999998887776665

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.35  E-value=6.3e-07  Score=71.79  Aligned_cols=149  Identities=16%  Similarity=0.267  Sum_probs=109.1

Q ss_pred             ccceeeEEeCCCCCeEEEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCC--eEEEEEccC-C
Q 040370           65 NGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDS--TVKLWEVSS-G  141 (228)
Q Consensus        65 ~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~--~i~~wd~~~-~  141 (228)
                      ....+|++|+-+.++|+.|+..|.|+++++.+|........|  ...++.+.-+.+|..+++.+.-.  -..+|++.+ +
T Consensus      1101 ~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH--~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~~ 1178 (1516)
T KOG1832|consen 1101 TALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCH--QSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASSTG 1178 (1516)
T ss_pred             ccceeeEEeecCCceEEeeeccceEEEEEccCcccccccccc--ccccccccccCCcceeeeeccccCchHHHhcccccc
Confidence            677899999999999999999999999999999988888887  78899998888998877665443  467899864 3


Q ss_pred             eeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecC---CCCCcEEEEeCCCCcEEEEecCC
Q 040370          142 RLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSN---HIGAPRWIEHSPAEAAFITCGTD  218 (228)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~s~~~d  218 (228)
                      ...+.+..      ..++.|+.....-+.+.. .....+||+.++.++.++..+   ....-+...|+|+..+++   .|
T Consensus      1179 ~~~Hsf~e------d~~vkFsn~~q~r~~gt~-~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl---nd 1248 (1516)
T KOG1832|consen 1179 GPRHSFDE------DKAVKFSNSLQFRALGTE-ADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL---ND 1248 (1516)
T ss_pred             Cccccccc------cceeehhhhHHHHHhccc-ccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe---eC
Confidence            34444432      235566655444444344 367889999999887774332   222346788999988776   45


Q ss_pred             CCEEEeeec
Q 040370          219 RSVRFWKEI  227 (228)
Q Consensus       219 g~i~vwd~~  227 (228)
                      |.  +||++
T Consensus      1249 Gv--LWDvR 1255 (1516)
T KOG1832|consen 1249 GV--LWDVR 1255 (1516)
T ss_pred             ce--eeeec
Confidence            53  78865

>PRK13616 lipoprotein LpqB; Provisional

Probab=98.33  E-value=0.00025  Score=56.65  Aligned_cols=184  Identities=10%  Similarity=0.063  Sum_probs=100.6

Q ss_pred             cceEEEEEeCCCCEEEEec------CCC--eEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecC-----
Q 040370           20 HNVRSVSFHPSGDFLLAGT------DHP--IAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKD-----   86 (228)
Q Consensus        20 ~~v~~~~~~~~~~~l~~~~------~d~--~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----   86 (228)
                      ..+...+++|+|+.++...      .|.  .|.+++.. +.. .....     ....+.-.|+|+|+.+++....     
T Consensus       350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~-~~lt~-----g~~~t~PsWspDG~~lw~v~dg~~~~~  422 (591)
T PRK13616        350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVA-VQVLE-----GHSLTRPSWSLDADAVWVVVDGNTVVR  422 (591)
T ss_pred             cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-Ccc-eeeec-----CCCCCCceECCCCCceEEEecCcceEE
Confidence            4677889999999887654      243  44444542 222 22211     2247788999998877776532     


Q ss_pred             -------CeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEE---EEccCCeeEEEEe-----cce
Q 040370           87 -------GAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKL---WEVSSGRLVKQYL-----GAT  151 (228)
Q Consensus        87 -------g~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~---wd~~~~~~~~~~~-----~~~  151 (228)
                             +.+.+.+++.++...     .....|..+.|+|||..++... ++.|.+   -....|.  ..+.     ...
T Consensus       423 v~~~~~~gql~~~~vd~ge~~~-----~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~--~~l~~~~~l~~~  494 (591)
T PRK13616        423 VIRDPATGQLARTPVDASAVAS-----RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQ--YALTNPREVGPG  494 (591)
T ss_pred             EeccCCCceEEEEeccCchhhh-----ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCc--eeecccEEeecc
Confidence                   223333333333222     1145699999999999888765 467777   4433443  1121     111


Q ss_pred             eeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEee-cCCCCCcEEEEeCCCCcEEEEecCCCCE
Q 040370          152 HTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWS-SNHIGAPRWIEHSPAEAAFITCGTDRSV  221 (228)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~s~~~dg~i  221 (228)
                      .......+.|.+++..++.....+..+...++. |.....+. .....++..++-+++  .++....+|.+
T Consensus       495 l~~~~~~l~W~~~~~L~V~~~~~~~~v~~v~vD-G~~~~~~~~~n~~~~v~~vaa~~~--~iyv~~~~g~~  562 (591)
T PRK13616        495 LGDTAVSLDWRTGDSLVVGRSDPEHPVWYVNLD-GSNSDALPSRNLSAPVVAVAASPS--TVYVTDARAVL  562 (591)
T ss_pred             cCCccccceEecCCEEEEEecCCCCceEEEecC-CccccccCCCCccCceEEEecCCc--eEEEEcCCceE
Confidence            222346788999998665544333334444443 22221211 123567777877763  34444556544

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=98.33  E-value=0.00059  Score=51.47  Aligned_cols=208  Identities=13%  Similarity=0.105  Sum_probs=101.3

Q ss_pred             cceEEEEEe-----------CCCCEEEEec-CCCeEEEEEcccc----eEEeeeccceeee---ccceeeEEeCCCCCeE
Q 040370           20 HNVRSVSFH-----------PSGDFLLAGT-DHPIAHLYDVNTF----QCYLSANVPEISV---NGAINQVRYSSTGGMY   80 (228)
Q Consensus        20 ~~v~~~~~~-----------~~~~~l~~~~-~d~~i~vw~~~~~----~~~~~~~~~~~~~---~~~i~~~~~~~~~~~l   80 (228)
                      .+....-|+           .+.++|+..+ ..+.|.|.|+.+.    +..+.........   -.....+..-|+|+.+
T Consensus        65 DElHH~GWNaCSsc~~~~~~~~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~im  144 (461)
T PF05694_consen   65 DELHHSGWNACSSCHYGDPSKERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIM  144 (461)
T ss_dssp             --B---EES--GGSTT--TT--S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EE
T ss_pred             CccccccCcccccccCCCCcccCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEE
Confidence            456666665           2456666655 7789999998742    3333332211110   1223344556789888


Q ss_pred             EEEec------CCeEEEEeCCCCceeeEEecccc-cceeEEEEECCCCCEEEEee--------------------CCCeE
Q 040370           81 VTASK------DGAIRLWDGVSANCVRSIVGAHG-TAEATSANFTKDQRFVLSCG--------------------KDSTV  133 (228)
Q Consensus        81 ~~~~~------dg~v~iwd~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~--------------------~d~~i  133 (228)
                      +++-.      -|-+.+.|-++.+.......... ...-..+.+.|..+.++|..                    ...++
T Consensus       145 IS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l  224 (461)
T PF05694_consen  145 ISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSL  224 (461)
T ss_dssp             EEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EE
T ss_pred             EEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeE
Confidence            87632      25688889888777776655321 33446788888888888775                    34689


Q ss_pred             EEEEccCCeeEEEEecceeeeeeeEEEE--CCCCcEEEEeeCCCCeEEEEEc-CCcc----eeEEeec----CC------
Q 040370          134 KLWEVSSGRLVKQYLGATHTQLRFQAVF--NDTEEFVLSIDEPSNEIVIWDA-LTAE----KVAKWSS----NH------  196 (228)
Q Consensus       134 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~d~~i~i~d~-~~~~----~~~~~~~----~~------  196 (228)
                      .+||+.+.+.++++...........+.|  .|+..+-++++.-..+|..|-- ..++    .+..+..    +-      
T Consensus       225 ~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml  304 (461)
T PF05694_consen  225 HVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEML  304 (461)
T ss_dssp             EEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGG
T ss_pred             EEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccc
Confidence            9999999999999876544445555555  5666666655544466665543 3332    1222211    00      


Q ss_pred             ------CCCcEEEEeCCCCcEEEEec-CCCCEEEeeec
Q 040370          197 ------IGAPRWIEHSPAEAAFITCG-TDRSVRFWKEI  227 (228)
Q Consensus       197 ------~~~v~~~~~~~~~~~l~s~~-~dg~i~vwd~~  227 (228)
                            ..-|+.|..|.|.++|..+. .+|.|+.||+.
T Consensus       305 ~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDIS  342 (461)
T PF05694_consen  305 KPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDIS  342 (461)
T ss_dssp             GGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-S
T ss_pred             cccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecC
Confidence                  24578999999999887766 68999999974

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=98.31  E-value=0.00015  Score=43.84  Aligned_cols=104  Identities=15%  Similarity=0.091  Sum_probs=64.3

Q ss_pred             eeeEEeCC---CC-CeEEEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCee
Q 040370           68 INQVRYSS---TG-GMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRL  143 (228)
Q Consensus        68 i~~~~~~~---~~-~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~  143 (228)
                      |+++++..   +| +.|++|+.|..|++|+-  .+.+.++..   ...+.++.-... ..++.+..+|+|-+|+-.  +.
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~e---~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~--~R   73 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEITE---TDKVTSLCSLGG-GRFAYALANGTVGVYDRS--QR   73 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEec---ccceEEEEEcCC-CEEEEEecCCEEEEEeCc--ce
Confidence            45565543   32 58999999999999974  466666665   557777776655 669999999999999853  33


Q ss_pred             EEEEecceeeeeeeEEEECCCCcEEEEeeCCCCeEE
Q 040370          144 VKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIV  179 (228)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~  179 (228)
                      +-..+...............+|..-+.+|-.+|.|-
T Consensus        74 lWRiKSK~~~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   74 LWRIKSKNQVTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             eeeeccCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence            333333222222222233344444444454467764

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=98.30  E-value=0.00063  Score=50.60  Aligned_cols=197  Identities=12%  Similarity=0.115  Sum_probs=111.1

Q ss_pred             cCcceEEEEEeC---C----CCEEEEecC----------CCeEEEEEcccc----eEEeeeccceeeeccceeeEEeCCC
Q 040370           18 DTHNVRSVSFHP---S----GDFLLAGTD----------HPIAHLYDVNTF----QCYLSANVPEISVNGAINQVRYSST   76 (228)
Q Consensus        18 ~~~~v~~~~~~~---~----~~~l~~~~~----------d~~i~vw~~~~~----~~~~~~~~~~~~~~~~i~~~~~~~~   76 (228)
                      ..+.+.+++.-.   +    ..+|++|+.          .|.|.++++...    ..+...  ......++|++++-- +
T Consensus        22 ~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i--~~~~~~g~V~ai~~~-~   98 (321)
T PF03178_consen   22 PNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLI--HSTEVKGPVTAICSF-N   98 (321)
T ss_dssp             TTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEE--EEEEESS-EEEEEEE-T
T ss_pred             CCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEE--EEEeecCcceEhhhh-C
Confidence            344555555433   2    567777653          289999999984    111111  112227889888766 3


Q ss_pred             CCeEEEEecCCeEEEEeCCCCc-eeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccC-CeeEEEEecceeee
Q 040370           77 GGMYVTASKDGAIRLWDGVSAN-CVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSS-GRLVKQYLGATHTQ  154 (228)
Q Consensus        77 ~~~l~~~~~dg~v~iwd~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~-~~~~~~~~~~~~~~  154 (228)
                      +. ++.+. ++.|.+|++...+ ....-..+ ....+.++...  +++++.|..-..+.++..+. ++.+..+.......
T Consensus        99 ~~-lv~~~-g~~l~v~~l~~~~~l~~~~~~~-~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~  173 (321)
T PF03178_consen   99 GR-LVVAV-GNKLYVYDLDNSKTLLKKAFYD-SPFYITSLSVF--KNYILVGDAMKSVSLLRYDEENNKLILVARDYQPR  173 (321)
T ss_dssp             TE-EEEEE-TTEEEEEEEETTSSEEEEEEE--BSSSEEEEEEE--TTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-B
T ss_pred             CE-EEEee-cCEEEEEEccCcccchhhheec-ceEEEEEEecc--ccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCc
Confidence            44 44443 4789999998887 44333332 24466666554  56899999888888875543 33344443333455


Q ss_pred             eeeEEEECCCCcEEEEeeCCCCeEEEEEcCC-------cc-eeEE-eecCCCCCcEEE---EeCCC--C------cEEEE
Q 040370          155 LRFQAVFNDTEEFVLSIDEPSNEIVIWDALT-------AE-KVAK-WSSNHIGAPRWI---EHSPA--E------AAFIT  214 (228)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~-------~~-~~~~-~~~~~~~~v~~~---~~~~~--~------~~l~s  214 (228)
                      .+.++.+-+++..++++.. +|.+.++....       +. .+.. ........|+++   .+.|.  +      ..++-
T Consensus       174 ~v~~~~~l~d~~~~i~~D~-~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~  252 (321)
T PF03178_consen  174 WVTAAEFLVDEDTIIVGDK-DGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILY  252 (321)
T ss_dssp             EEEEEEEE-SSSEEEEEET-TSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEE
T ss_pred             cEEEEEEecCCcEEEEEcC-CCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEEeeecCCCCcccccceEEE
Confidence            6777777755566666555 79999997752       12 2221 112334567777   55552  2      24777


Q ss_pred             ecCCCCEEE
Q 040370          215 CGTDRSVRF  223 (228)
Q Consensus       215 ~~~dg~i~v  223 (228)
                      ++.+|.|-.
T Consensus       253 ~T~~G~Ig~  261 (321)
T PF03178_consen  253 GTVDGSIGV  261 (321)
T ss_dssp             EETTS-EEE
T ss_pred             EecCCEEEE
Confidence            788998874

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.28  E-value=0.00075  Score=50.87  Aligned_cols=204  Identities=13%  Similarity=0.036  Sum_probs=105.0

Q ss_pred             CcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceee-------------eccceeeEEeCCCCCeEEEEec
Q 040370           19 THNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEIS-------------VNGAINQVRYSSTGGMYVTASK   85 (228)
Q Consensus        19 ~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~-------------~~~~i~~~~~~~~~~~l~~~~~   85 (228)
                      ...+....|+|+|+.++... ++.|.+.+..+++..+........             .-+.-..+.|||++++|+....
T Consensus        42 ~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~  120 (353)
T PF00930_consen   42 PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRF  120 (353)
T ss_dssp             ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEE
T ss_pred             ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEE
Confidence            56788999999999999876 468999988777544322211000             0112367889999998887643


Q ss_pred             C-Ce-----------------------------------EEEEeCCCCceee-EEe--cccccceeEEEEECCCCCEEEE
Q 040370           86 D-GA-----------------------------------IRLWDGVSANCVR-SIV--GAHGTAEATSANFTKDQRFVLS  126 (228)
Q Consensus        86 d-g~-----------------------------------v~iwd~~~~~~~~-~~~--~~~~~~~i~~~~~~~~~~~l~~  126 (228)
                      | ..                                   +.++|+.+++... ...  .......+..+.|.++++.++.
T Consensus       121 d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~  200 (353)
T PF00930_consen  121 DEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWV  200 (353)
T ss_dssp             E-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEE
T ss_pred             CCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEE
Confidence            2 11                                   2334444443321 111  0112456788889888884443


Q ss_pred             ee--CCC---eEEEEEccCCeeEEEEecceeeee---eeEEEEC-CCCcEEEEeeCCCCeEEE--EEcCCcceeEEeecC
Q 040370          127 CG--KDS---TVKLWEVSSGRLVKQYLGATHTQL---RFQAVFN-DTEEFVLSIDEPSNEIVI--WDALTAEKVAKWSSN  195 (228)
Q Consensus       127 ~~--~d~---~i~~wd~~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~d~~i~i--~d~~~~~~~~~~~~~  195 (228)
                      .-  .+.   .+.++|..++......... ....   .....+. +++..++.....||--+|  ++...+. ...+ ..
T Consensus       201 ~~~nR~q~~~~l~~~d~~tg~~~~~~~e~-~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~-~~~l-T~  277 (353)
T PF00930_consen  201 QWLNRDQNRLDLVLCDASTGETRVVLEET-SDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGK-PRQL-TS  277 (353)
T ss_dssp             EEEETTSTEEEEEEEEECTTTCEEEEEEE-SSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSE-EEES-S-
T ss_pred             EEcccCCCEEEEEEEECCCCceeEEEEec-CCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccc-eecc-cc
Confidence            33  222   4667788766543333211 1111   1234443 555544444445665444  4554444 2233 34


Q ss_pred             CCCCcEE-EEeCCCCcEE-EEecCC--CCEEEeee
Q 040370          196 HIGAPRW-IEHSPAEAAF-ITCGTD--RSVRFWKE  226 (228)
Q Consensus       196 ~~~~v~~-~~~~~~~~~l-~s~~~d--g~i~vwd~  226 (228)
                      ..-.|.. +.++++++.| +++..+  +.-.+|.+
T Consensus       278 G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v  312 (353)
T PF00930_consen  278 GDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRV  312 (353)
T ss_dssp             SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEE
T ss_pred             CceeecccceEcCCCCEEEEEecCCCCCceEEEEE
Confidence            4555644 6677766544 355442  24445543

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.28  E-value=1.2e-05  Score=62.91  Aligned_cols=116  Identities=10%  Similarity=0.096  Sum_probs=81.2

Q ss_pred             cceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcce
Q 040370          109 TAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEK  188 (228)
Q Consensus       109 ~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~  188 (228)
                      ...+.--+++..+++++.|+.-|.+++|.-..++. ..++.............++...++++ |+..|.|.++-+....+
T Consensus        33 ~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~-~~~~~~~~~~~~~~~~vs~~e~lvAa-gt~~g~V~v~ql~~~~p  110 (726)
T KOG3621|consen   33 PARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEM-RKLKNEGATGITCVRSVSSVEYLVAA-GTASGRVSVFQLNKELP  110 (726)
T ss_pred             cceEEEEEeecCCceEEEecccceEEEEecCchhh-hcccccCccceEEEEEecchhHhhhh-hcCCceEEeehhhccCC
Confidence            44555556677899999999999999999665543 33332223344455556666655555 55569999998876443


Q ss_pred             eEEe-----ecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeee
Q 040370          189 VAKW-----SSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKE  226 (228)
Q Consensus       189 ~~~~-----~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~  226 (228)
                      ....     ...|...|++++|++++..+++|...|.|..-.+
T Consensus       111 ~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L  153 (726)
T KOG3621|consen  111 RDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTEL  153 (726)
T ss_pred             CcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEe
Confidence            2222     1347789999999999999999999999876554

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.27  E-value=7.9e-06  Score=63.07  Aligned_cols=94  Identities=15%  Similarity=0.181  Sum_probs=73.9

Q ss_pred             ccceeeEEeCCCCCeEEEEecCCeEEEEeCCCCceeeEEecccccceeE-EEEECCCCCEEEEeeCCCeEEEEEccCCee
Q 040370           65 NGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEAT-SANFTKDQRFVLSCGKDSTVKLWEVSSGRL  143 (228)
Q Consensus        65 ~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~  143 (228)
                      ...+.-+.|+|.-..+|++..+|.|.+..++ .+.+..+..+  ...++ +++|.|||+.|+.|-.||+|++-|+.++..
T Consensus        20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p--~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~   96 (665)
T KOG4640|consen   20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIP--GENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGR   96 (665)
T ss_pred             ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCC--CCccceeeeecCCCCEEEEEecCCeEEEEEccCCCc
Confidence            3457789999999999999999999999987 6667777654  44455 999999999999999999999999999887


Q ss_pred             EEEEecceeeeeeeEEEEC
Q 040370          144 VKQYLGATHTQLRFQAVFN  162 (228)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~  162 (228)
                      +..... .....+....|.
T Consensus        97 l~~~~~-s~e~~is~~~w~  114 (665)
T KOG4640|consen   97 LVSFLF-SVETDISKGIWD  114 (665)
T ss_pred             eecccc-ccccchheeecc
Confidence            766321 133445555554

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.24  E-value=0.00066  Score=48.11  Aligned_cols=190  Identities=16%  Similarity=0.174  Sum_probs=104.6

Q ss_pred             EEeCCCCEEEEecC-----CCeEEEEEcccceE-EeeeccceeeeccceeeEEeCCCCCeEEEEecC-------------
Q 040370           26 SFHPSGDFLLAGTD-----HPIAHLYDVNTFQC-YLSANVPEISVNGAINQVRYSSTGGMYVTASKD-------------   86 (228)
Q Consensus        26 ~~~~~~~~l~~~~~-----d~~i~vw~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-------------   86 (228)
                      .|||||.+|++.-+     -|.|-|||...+-. +..+..   + .-....+.+.+||+.++.+...             
T Consensus       120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t---~-GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lN  195 (366)
T COG3490         120 VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFST---H-GIGPHEVTLMADGRTLVVANGGIETHPDFGRTELN  195 (366)
T ss_pred             ccCCCCcEEEeecCCCCCCCceEEEEecccccceeccccc---C-CcCcceeEEecCCcEEEEeCCceecccccCccccc
Confidence            58999999987543     37899999885321 112221   1 3445778999999988876420             


Q ss_pred             -----CeEEEEeCCCCceeeEEecc--cccceeEEEEECCCCCEEEEeeCCCe-----EEEEEccCCeeEEEEecce---
Q 040370           87 -----GAIRLWDGVSANCVRSIVGA--HGTAEATSANFTKDQRFVLSCGKDST-----VKLWEVSSGRLVKQYLGAT---  151 (228)
Q Consensus        87 -----g~v~iwd~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~d~~-----i~~wd~~~~~~~~~~~~~~---  151 (228)
                           -++.+.|..+++.+.+....  ...-.+..++..+||...+.+-..|.     -.+=-...++.+.-+....   
T Consensus       196 ldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~  275 (366)
T COG3490         196 LDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQT  275 (366)
T ss_pred             hhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHH
Confidence                 12333343444444333222  22446677777777765544432221     1111112233333222111   


Q ss_pred             --eeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEe
Q 040370          152 --HTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFW  224 (228)
Q Consensus       152 --~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vw  224 (228)
                        -...+-+++.+.+...++.++-..+...+||..+|..+......   ....++-  ...-++..+.+|.+.++
T Consensus       276 ~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~l~---daaGva~--~~~gf~vssg~G~~~~~  345 (366)
T COG3490         276 AAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEAALP---DAAGVAA--AKGGFAVSSGQGRIIFY  345 (366)
T ss_pred             HHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEeccccc---cccccee--ccCceEEecCCceEEec
Confidence              13345567777777788877777788899999999887664211   1222222  22235555566776654

>smart00320 WD40 WD40 repeats

Probab=98.23  E-value=5.4e-06  Score=39.93  Aligned_cols=36  Identities=17%  Similarity=0.452  Sum_probs=31.2

Q ss_pred             eEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEee
Q 040370          189 VAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWK  225 (228)
Q Consensus       189 ~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd  225 (228)
                      ...+ ..|...+.++.|.+++.++++++.|+.+++|+
T Consensus         5 ~~~~-~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        5 LKTL-KGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEE-EecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            3444 46888999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=98.21  E-value=0.00011  Score=59.83  Aligned_cols=138  Identities=11%  Similarity=0.079  Sum_probs=92.8

Q ss_pred             cCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCC-----CCCeEEEEecCCeEEEEeCCCCc--eee-EEeccccc
Q 040370           38 TDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSS-----TGGMYVTASKDGAIRLWDGVSAN--CVR-SIVGAHGT  109 (228)
Q Consensus        38 ~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-----~~~~l~~~~~dg~v~iwd~~~~~--~~~-~~~~~~~~  109 (228)
                      .....|+-.|++.|+.+.......   ..+|..++-..     ....-+.|-.+..+..||+|-..  .+. ........
T Consensus       501 ~~~~~ly~mDLe~GKVV~eW~~~~---~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~  577 (794)
T PF08553_consen  501 NNPNKLYKMDLERGKVVEEWKVHD---DIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSK  577 (794)
T ss_pred             CCCCceEEEecCCCcEEEEeecCC---CcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccC
Confidence            345778888999999888776643   23344443221     12345677788899999998643  221 11111224


Q ss_pred             ceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEc
Q 040370          110 AEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDA  183 (228)
Q Consensus       110 ~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~  183 (228)
                      ....|++-+.+| +||.|+.+|.||+||- .++...+.. +.-..++..+..+.+|+++++++.  ..+.+++.
T Consensus       578 ~~Fs~~aTt~~G-~iavgs~~G~IRLyd~-~g~~AKT~l-p~lG~pI~~iDvt~DGkwilaTc~--tyLlLi~t  646 (794)
T PF08553_consen  578 NNFSCFATTEDG-YIAVGSNKGDIRLYDR-LGKRAKTAL-PGLGDPIIGIDVTADGKWILATCK--TYLLLIDT  646 (794)
T ss_pred             CCceEEEecCCc-eEEEEeCCCcEEeecc-cchhhhhcC-CCCCCCeeEEEecCCCcEEEEeec--ceEEEEEE
Confidence            566777777665 6999999999999994 444333322 225688999999999999999885  77888875

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>smart00320 WD40 WD40 repeats

Probab=98.20  E-value=8.5e-06  Score=39.19  Aligned_cols=36  Identities=31%  Similarity=0.492  Sum_probs=31.5

Q ss_pred             eEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEE
Q 040370           12 AFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYD   47 (228)
Q Consensus        12 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~   47 (228)
                      ...+..|...|.++.|++++..+++++.|+.+++|+
T Consensus         5 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        5 LKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            344557889999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=98.19  E-value=0.001  Score=52.46  Aligned_cols=195  Identities=11%  Similarity=0.080  Sum_probs=109.6

Q ss_pred             CCEEEEecCCCeEEEEEcccceEEeeecccee--eeccce--eeEEeCCCCCeEEEEecCCeEEEEeCCCCceeeEEecc
Q 040370           31 GDFLLAGTDHPIAHLYDVNTFQCYLSANVPEI--SVNGAI--NQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGA  106 (228)
Q Consensus        31 ~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~--~~~~~i--~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~  106 (228)
                      +..++.++.++.+.-.|.++++.+........  .....+  ..+... ++..++.++.+|.|.-+|.++++.+-.....
T Consensus        61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~  139 (488)
T cd00216          61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKFGNN  139 (488)
T ss_pred             CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeeecCC
Confidence            45677788889999999999987766654321  000001  011111 2257888889999999999999988777653


Q ss_pred             cccceeEEEEECC--CCCEEEEee---------CCCeEEEEEccCCeeEEEEecceeee-------------------ee
Q 040370          107 HGTAEATSANFTK--DQRFVLSCG---------KDSTVKLWEVSSGRLVKQYLGATHTQ-------------------LR  156 (228)
Q Consensus       107 ~~~~~i~~~~~~~--~~~~l~~~~---------~d~~i~~wd~~~~~~~~~~~~~~~~~-------------------~~  156 (228)
                      .....-..+.-+|  .+..++.++         .++.+.-+|..+++.+-.+.......                   .-
T Consensus       140 ~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw  219 (488)
T cd00216         140 DQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSW  219 (488)
T ss_pred             CCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCcc
Confidence            2100001111122  124455553         36789999999999887765421100                   00


Q ss_pred             eEEEECCCCcEEEEeeCC-----------------CCeEEEEEcCCcceeEEeecCCCC-----CcEEEEeC----CCCc
Q 040370          157 FQAVFNDTEEFVLSIDEP-----------------SNEIVIWDALTAEKVAKWSSNHIG-----APRWIEHS----PAEA  210 (228)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~-----------------d~~i~i~d~~~~~~~~~~~~~~~~-----~v~~~~~~----~~~~  210 (228)
                      ......+.+..+++..++                 ++.+.-+|.++|+..-.....+..     ......+.    -++.
T Consensus       220 ~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~  299 (488)
T cd00216         220 ASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGK  299 (488)
T ss_pred             CCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCC
Confidence            123334445555554431                 137999999999988776432211     00000111    1232


Q ss_pred             ---EEEEecCCCCEEEeee
Q 040370          211 ---AFITCGTDRSVRFWKE  226 (228)
Q Consensus       211 ---~l~s~~~dg~i~vwd~  226 (228)
                         .++.++.+|.+...|.
T Consensus       300 ~~~~V~~g~~~G~l~ald~  318 (488)
T cd00216         300 PVPAIVHAPKNGFFYVLDR  318 (488)
T ss_pred             eeEEEEEECCCceEEEEEC
Confidence               5667777887766654

The alignment model contains an 8-bladed beta-propeller.

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.17  E-value=0.0017  Score=50.17  Aligned_cols=196  Identities=13%  Similarity=0.118  Sum_probs=102.5

Q ss_pred             eEEEEEeCCCCEEEEe-----cCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCC---------
Q 040370           22 VRSVSFHPSGDFLLAG-----TDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDG---------   87 (228)
Q Consensus        22 v~~~~~~~~~~~l~~~-----~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg---------   87 (228)
                      +....++|+++++|.+     ++...+++.|+++++.+.....     ......+.|.++++.|+....+.         
T Consensus       126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~-----~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~  200 (414)
T PF02897_consen  126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIE-----NPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGY  200 (414)
T ss_dssp             EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEE-----EEESEEEEECTTSSEEEEEECSTTTSS-CCGC
T ss_pred             eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccc-----ccccceEEEeCCCCEEEEEEeCcccccccCCC
Confidence            4467889999999854     2334699999999976543211     11223499999988776554332         


Q ss_pred             --eEEEEeCCCCcee--eEEecccccceeEEEEECCCCCEEEEeeC---C-CeEEEEEccCC----eeEEEEecceeeee
Q 040370           88 --AIRLWDGVSANCV--RSIVGAHGTAEATSANFTKDQRFVLSCGK---D-STVKLWEVSSG----RLVKQYLGATHTQL  155 (228)
Q Consensus        88 --~v~iwd~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---d-~~i~~wd~~~~----~~~~~~~~~~~~~~  155 (228)
                        .|+.|.+.+....  ..+...........+..++++++++....   + ..+.+.|+..+    .....+... ....
T Consensus       201 ~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~-~~~~  279 (414)
T PF02897_consen  201 PRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPR-EDGV  279 (414)
T ss_dssp             CEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEES-SSS-
T ss_pred             CcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCC-CCce
Confidence              3788888766433  33333321222667889999998775432   2 45888888764    222333221 1111


Q ss_pred             eeEEEECCCCcEEEEeeC--CCCeEEEEEcCCcce--eEEeecCCCC--CcEEEEeCCCCcEE-EEecCCCC--EEEeee
Q 040370          156 RFQAVFNDTEEFVLSIDE--PSNEIVIWDALTAEK--VAKWSSNHIG--APRWIEHSPAEAAF-ITCGTDRS--VRFWKE  226 (228)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~--~d~~i~i~d~~~~~~--~~~~~~~~~~--~v~~~~~~~~~~~l-~s~~~dg~--i~vwd~  226 (228)
                      ...+.. ..+.+.+.+..  .++.|...++.+...  .......+..  .+..+..  .+.+| +.--.++.  |+++++
T Consensus       280 ~~~v~~-~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~--~~~~Lvl~~~~~~~~~l~v~~~  356 (414)
T PF02897_consen  280 EYYVDH-HGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSL--FKDYLVLSYRENGSSRLRVYDL  356 (414)
T ss_dssp             EEEEEE-ETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEE--ETTEEEEEEEETTEEEEEEEET
T ss_pred             EEEEEc-cCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEE--ECCEEEEEEEECCccEEEEEEC
Confidence            122222 24444444432  246777777776653  2212234444  3444443  33344 44444443  555553

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=98.15  E-value=0.00038  Score=50.94  Aligned_cols=195  Identities=11%  Similarity=0.079  Sum_probs=113.8

Q ss_pred             EEEEeCCCCEEEEe--cCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCC-CCcee
Q 040370           24 SVSFHPSGDFLLAG--TDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGV-SANCV  100 (228)
Q Consensus        24 ~~~~~~~~~~l~~~--~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~-~~~~~  100 (228)
                      .++++.++++++..  +-...|.|.|+...+.+.....+.      +..+--++ .+-|.+-+.||.+.-..+. .|+..
T Consensus        99 ~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PG------C~~iyP~~-~~~F~~lC~DGsl~~v~Ld~~Gk~~  171 (342)
T PF06433_consen   99 MFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPG------CWLIYPSG-NRGFSMLCGDGSLLTVTLDADGKEA  171 (342)
T ss_dssp             GEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTS------EEEEEEEE-TTEEEEEETTSCEEEEEETSTSSEE
T ss_pred             ceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCC------EEEEEecC-CCceEEEecCCceEEEEECCCCCEe
Confidence            45778888887764  445678899999888777666532      22222222 2458888899999998887 45543


Q ss_pred             eEEec--ccccceeE-EEEECCCCCEEEEeeCCCeEEEEEccCCeeE--EEEecc--------eeeeeeeEEEECCCCcE
Q 040370          101 RSIVG--AHGTAEAT-SANFTKDQRFVLSCGKDSTVKLWEVSSGRLV--KQYLGA--------THTQLRFQAVFNDTEEF  167 (228)
Q Consensus       101 ~~~~~--~~~~~~i~-~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~--~~~~~~--------~~~~~~~~~~~~~~~~~  167 (228)
                      ++...  +....++. .-++...+..++-.+.+|.|+--|+......  ..+...        -.+.....+++++....
T Consensus       172 ~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~r  251 (342)
T PF06433_consen  172 QKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGR  251 (342)
T ss_dssp             EEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTE
T ss_pred             EeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCe
Confidence            22211  11112222 2334444455555778999999998765422  222110        01222334566665544


Q ss_pred             EEEeeC-------CC--CeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCc-EEEE-ecCCCCEEEeeec
Q 040370          168 VLSIDE-------PS--NEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEA-AFIT-CGTDRSVRFWKEI  227 (228)
Q Consensus       168 ~~~~~~-------~d--~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s-~~~dg~i~vwd~~  227 (228)
                      +++...       .|  ..|-++|+.+++.+.++...  .++.+|+.+.+.+ +|++ ...++.+.+||..
T Consensus       252 lyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~--~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~  320 (342)
T PF06433_consen  252 LYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLE--HPIDSIAVSQDDKPLLYALSAGDGTLDVYDAA  320 (342)
T ss_dssp             EEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEE--EEESEEEEESSSS-EEEEEETTTTEEEEEETT
T ss_pred             EEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCC--CccceEEEccCCCcEEEEEcCCCCeEEEEeCc
Confidence            443221       12  25777899999999998533  3677899988654 6654 4568999999963

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=98.13  E-value=0.0018  Score=48.95  Aligned_cols=189  Identities=12%  Similarity=0.129  Sum_probs=92.8

Q ss_pred             EeCCCCEEEEe--c----CCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEec---------------
Q 040370           27 FHPSGDFLLAG--T----DHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASK---------------   85 (228)
Q Consensus        27 ~~~~~~~l~~~--~----~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---------------   85 (228)
                      .-|+|+.++++  .    .-|-+.+.|-++.+........... ...-....|.|..+.++|...               
T Consensus       137 clp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~-~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~  215 (461)
T PF05694_consen  137 CLPDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGP-QPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDL  215 (461)
T ss_dssp             E-SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT-------EEEETTTTEEEE-B---HHHHTT---TTTH
T ss_pred             ecCCccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCC-CCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHh
Confidence            34688888864  2    2356778888877665554433221 334467788888888888642               


Q ss_pred             -----CCeEEEEeCCCCceeeEEecccccceeEEEEEC--CCCCE-EEEeeCCCeEEEEEc-cCCee----EEEEecce-
Q 040370           86 -----DGAIRLWDGVSANCVRSIVGAHGTAEATSANFT--KDQRF-VLSCGKDSTVKLWEV-SSGRL----VKQYLGAT-  151 (228)
Q Consensus        86 -----dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~-l~~~~~d~~i~~wd~-~~~~~----~~~~~~~~-  151 (228)
                           ..++.+||+.+.+.++.+...........+.|.  |+..+ ++.+.-..+|..|-- +.++.    +..+.... 
T Consensus       216 ~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v  295 (461)
T PF05694_consen  216 EAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKV  295 (461)
T ss_dssp             HHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE-
T ss_pred             hcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCccc
Confidence                 368999999999999999876434445556665  44444 333334445554433 44432    11221100 


Q ss_pred             --------------eeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEe---ecC---------------CCCC
Q 040370          152 --------------HTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKW---SSN---------------HIGA  199 (228)
Q Consensus       152 --------------~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~---~~~---------------~~~~  199 (228)
                                    -+..++.+..+.+.+++.+++-..|.++.||+.........   ..+               -.+.
T Consensus       296 ~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~Gg  375 (461)
T PF05694_consen  296 EGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGG  375 (461)
T ss_dssp             -SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S-
T ss_pred             CcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCC
Confidence                          13457888999999999999999999999999765433322   111               1123


Q ss_pred             cEEEEeCCCCcEEEEec
Q 040370          200 PRWIEHSPAEAAFITCG  216 (228)
Q Consensus       200 v~~~~~~~~~~~l~s~~  216 (228)
                      ..-+..|.||+.|....
T Consensus       376 PqMvqlS~DGkRlYvTn  392 (461)
T PF05694_consen  376 PQMVQLSLDGKRLYVTN  392 (461)
T ss_dssp             ---EEE-TTSSEEEEE-
T ss_pred             CCeEEEccCCeEEEEEe
Confidence            35677888888776543

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=98.07  E-value=0.0026  Score=50.15  Aligned_cols=160  Identities=13%  Similarity=0.178  Sum_probs=95.8

Q ss_pred             EEEeCCCCEEEEecCCC------------------eEEEEEcccceEEeeeccceee------eccc-eeeEEeCCCCC-
Q 040370           25 VSFHPSGDFLLAGTDHP------------------IAHLYDVNTFQCYLSANVPEIS------VNGA-INQVRYSSTGG-   78 (228)
Q Consensus        25 ~~~~~~~~~l~~~~~d~------------------~i~vw~~~~~~~~~~~~~~~~~------~~~~-i~~~~~~~~~~-   78 (228)
                      .++.+.+..++.++.++                  .|.-.|.++|+.....+.....      ...+ +..+. .-++. 
T Consensus       222 pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~-~~~g~~  300 (488)
T cd00216         222 PTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIK-PKDGKP  300 (488)
T ss_pred             eeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEecc-ccCCCe
Confidence            34444566777777665                  7999999999988776542110      0000 11111 01233 


Q ss_pred             --eEEEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEe------------------eCCCeEEEEEc
Q 040370           79 --MYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSC------------------GKDSTVKLWEV  138 (228)
Q Consensus        79 --~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~------------------~~d~~i~~wd~  138 (228)
                        .++.++.+|.+...|.++|+.+-.....     ...+..+|  ..++.+                  ..+|.+.-.|+
T Consensus       301 ~~~V~~g~~~G~l~ald~~tG~~~W~~~~~-----~~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~  373 (488)
T cd00216         301 VPAIVHAPKNGFFYVLDRTTGKLISARPEV-----EQPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDP  373 (488)
T ss_pred             eEEEEEECCCceEEEEECCCCcEeeEeEee-----ccccccCC--ceEEEccccccccCcccccCCCCCCCceEEEEEeC
Confidence              5788889999999999999988765432     11223333  223222                  24678889999


Q ss_pred             cCCeeEEEEecceee------eeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEee
Q 040370          139 SSGRLVKQYLGATHT------QLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWS  193 (228)
Q Consensus       139 ~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~  193 (228)
                      .+++.+-+.......      ...........+..+++++ .||.++.+|.++|+.+-+..
T Consensus       374 ~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~-~dG~l~ald~~tG~~lW~~~  433 (488)
T cd00216         374 KTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGA-ADGYFRAFDATTGKELWKFR  433 (488)
T ss_pred             CCCcEeeEeeCCccccccccCCcccCcceEecCCeEEEEC-CCCeEEEEECCCCceeeEEE
Confidence            999887666532110      0000000112345666655 48999999999999988874

The alignment model contains an 8-bladed beta-propeller.

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.06  E-value=0.0013  Score=46.13  Aligned_cols=109  Identities=14%  Similarity=0.083  Sum_probs=81.2

Q ss_pred             CCeEEEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeee
Q 040370           77 GGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLR  156 (228)
Q Consensus        77 ~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~  156 (228)
                      ..+++.|+..+.+.--|..+|+...+...   ...+.+-+.- -|++++.|+..|.+++.+..+|.+...+..  .....
T Consensus        23 kT~v~igSHs~~~~avd~~sG~~~We~il---g~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~--~~~vk   96 (354)
T KOG4649|consen   23 KTLVVIGSHSGIVIAVDPQSGNLIWEAIL---GVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVI--LETVK   96 (354)
T ss_pred             ceEEEEecCCceEEEecCCCCcEEeehhh---CceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeee--hhhhc
Confidence            45788899999999999999987765443   2233332222 477899999999999999999988777754  23333


Q ss_pred             eEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEe
Q 040370          157 FQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKW  192 (228)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~  192 (228)
                      ......+++..+..+ +.|+..+..|.++...+.+.
T Consensus        97 ~~a~~d~~~glIycg-shd~~~yalD~~~~~cVyks  131 (354)
T KOG4649|consen   97 VRAQCDFDGGLIYCG-SHDGNFYALDPKTYGCVYKS  131 (354)
T ss_pred             cceEEcCCCceEEEe-cCCCcEEEecccccceEEec
Confidence            455667788888775 45899999999998888775

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=98.05  E-value=0.0017  Score=45.95  Aligned_cols=193  Identities=12%  Similarity=0.058  Sum_probs=113.8

Q ss_pred             eEEEeecCc--ceEEEEEeCCCCEEEEecCCC--eEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCC
Q 040370           12 AFRVIQDTH--NVRSVSFHPSGDFLLAGTDHP--IAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDG   87 (228)
Q Consensus        12 ~~~~~~~~~--~v~~~~~~~~~~~l~~~~~d~--~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg   87 (228)
                      +++...|..  -...+.|..++.++-+.+.-|  .|+.+|+.+++.......+.......   ++.. +++...-.=.++
T Consensus        35 vv~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEG---it~~-~d~l~qLTWk~~  110 (264)
T PF05096_consen   35 VVETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEG---ITIL-GDKLYQLTWKEG  110 (264)
T ss_dssp             EEEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEE---EEEE-TTEEEEEESSSS
T ss_pred             EEEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCcccccee---EEEE-CCEEEEEEecCC
Confidence            444455654  455788877787777777655  78999999998776655543222222   3332 233444445789


Q ss_pred             eEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeee---eeeEEEECCC
Q 040370           88 AIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQ---LRFQAVFNDT  164 (228)
Q Consensus        88 ~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~---~~~~~~~~~~  164 (228)
                      ...+||..+.+.+.++...   ..-..++  .+++.|+.......++++|..+.+....+.......   ....+-+. +
T Consensus       111 ~~f~yd~~tl~~~~~~~y~---~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~  184 (264)
T PF05096_consen  111 TGFVYDPNTLKKIGTFPYP---GEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-N  184 (264)
T ss_dssp             EEEEEETTTTEEEEEEE-S---SS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-T
T ss_pred             eEEEEccccceEEEEEecC---CcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-c
Confidence            9999999999988888764   3456666  456677777777789999998877766664332222   22233333 2


Q ss_pred             CcEEEEeeCCCCeEEEEEcCCcceeEEeec-----------C---CCCCcEEEEeCCCCc-EEEEe
Q 040370          165 EEFVLSIDEPSNEIVIWDALTAEKVAKWSS-----------N---HIGAPRWIEHSPAEA-AFITC  215 (228)
Q Consensus       165 ~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~-----------~---~~~~v~~~~~~~~~~-~l~s~  215 (228)
                       ..+.+---....|...|..+|+....+..           .   ...-.+.|++.|..+ +++||
T Consensus       185 -G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG  249 (264)
T PF05096_consen  185 -GKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG  249 (264)
T ss_dssp             -TEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred             -CEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence             34444444457788888888887765520           0   134578899988655 45555

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.05  E-value=0.0018  Score=46.14  Aligned_cols=194  Identities=16%  Similarity=0.157  Sum_probs=123.0

Q ss_pred             ecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCC
Q 040370           17 QDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVS   96 (228)
Q Consensus        17 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~   96 (228)
                      +-...+.++.|+|+.+.|++..+.+.-.|+=...|+.+.......   -.....+.+..++++.++--.++.+.++.+..
T Consensus        83 g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g---~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~  159 (316)
T COG3204          83 GETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTG---FSDPETIEYIGGNQFVIVDERDRALYLFTVDA  159 (316)
T ss_pred             cccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccc---cCChhHeEEecCCEEEEEehhcceEEEEEEcC
Confidence            445669999999999988888777777777777888887776654   33456788887887777777788888887765


Q ss_pred             CceeeE-----Ee--c-ccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEE---Eecce-----eeeeeeEEE
Q 040370           97 ANCVRS-----IV--G-AHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQ---YLGAT-----HTQLRFQAV  160 (228)
Q Consensus        97 ~~~~~~-----~~--~-~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~---~~~~~-----~~~~~~~~~  160 (228)
                      ......     +.  . .+.....-.++|.|....|+.+-+-.-+.+|....+.....   ...+.     .-..+..+.
T Consensus       160 ~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~  239 (316)
T COG3204         160 DTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLE  239 (316)
T ss_pred             CccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccce
Confidence            532211     11  1 11144567899999888888887777777777653321111   11100     123355677


Q ss_pred             ECCCCcEEEEeeCCCCeEEEEEcCCcceeEEee--cC------CCCCcEEEEeCCCCcEEEE
Q 040370          161 FNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWS--SN------HIGAPRWIEHSPAEAAFIT  214 (228)
Q Consensus       161 ~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~--~~------~~~~v~~~~~~~~~~~l~s  214 (228)
                      |++....+++-+.+++.+.-.|.. |+.+..+.  .+      ...+.-.++..++|.+.++
T Consensus       240 ~~~~~~~LLVLS~ESr~l~Evd~~-G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~lYIv  300 (316)
T COG3204         240 FNAITNSLLVLSDESRRLLEVDLS-GEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGNLYIV  300 (316)
T ss_pred             ecCCCCcEEEEecCCceEEEEecC-CCeeeeEEeccCCCCCcccCCCcceeEECCCCCEEEE
Confidence            887777777667767888888854 44433331  11      1113445777777764443

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=98.04  E-value=9.7e-06  Score=55.04  Aligned_cols=141  Identities=9%  Similarity=0.017  Sum_probs=81.1

Q ss_pred             EEEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEE
Q 040370           80 YVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQA  159 (228)
Q Consensus        80 l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~  159 (228)
                      +..-+.||.|.-++++..+....-...+...    .....-+..+++|+.+|.|++|....-......... ....+.+.
T Consensus        33 l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~----~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s-~~e~i~~~  107 (238)
T KOG2444|consen   33 LRATSADGLVRERKVRKHKESCRSERFIDEG----QRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCS-GEESIDLG  107 (238)
T ss_pred             hccccCCcccccchhhhhhhhhhhhhhhhcc----eeecccCceEEeecccceEEEecCCccchHHHhhhc-ccccceec
Confidence            4445667888888776543221111111011    111123567899999999999987621111111100 11222222


Q ss_pred             EECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCC-CCcEEEEeCCCCcEEEEe--cCCCCEEEeee
Q 040370          160 VFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHI-GAPRWIEHSPAEAAFITC--GTDRSVRFWKE  226 (228)
Q Consensus       160 ~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~s~--~~dg~i~vwd~  226 (228)
                      ...-+...+.+++..||.|+.|+....+.+... ..|. .+......+..+..++.+  |.|..++.|++
T Consensus       108 Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~-g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~v  176 (238)
T KOG2444|consen  108 IPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYV-GQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNV  176 (238)
T ss_pred             cccccccceeEEeccCCceeeeccccCceeeee-ccccCCCcceeEEecCCceEEeeccccchhhhhcch
Confidence            222223336666666899999999888777766 5666 566666666667777777  77888888875

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=98.01  E-value=0.0027  Score=46.64  Aligned_cols=195  Identities=12%  Similarity=0.076  Sum_probs=109.1

Q ss_pred             ecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEee-eccceeeeccceeeEEeCCCCCeEEEEec----------
Q 040370           17 QDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLS-ANVPEISVNGAINQVRYSSTGGMYVTASK----------   85 (228)
Q Consensus        17 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----------   85 (228)
                      .+.+.+.++..-..+..|+++. .| +.+++.+++..... ............+.+...|+|.+.++...          
T Consensus        63 ~~p~~~~~~~~~d~~g~Lv~~~-~g-~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~  140 (307)
T COG3386          63 PSPGGFSSGALIDAGGRLIACE-HG-VRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEER  140 (307)
T ss_pred             ECCCCcccceeecCCCeEEEEc-cc-cEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccC
Confidence            3444555554444444555443 33 56777766655222 22222222456788899999986664433          


Q ss_pred             -CCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCC-CeEEEEEccC--Cee---EEEEecceeeeeeeE
Q 040370           86 -DGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKD-STVKLWEVSS--GRL---VKQYLGATHTQLRFQ  158 (228)
Q Consensus        86 -dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-~~i~~wd~~~--~~~---~~~~~~~~~~~~~~~  158 (228)
                       -|.|+..|. .+...+.+..+  -..-+.++|+||++.|+.+... +.|.-|++..  +..   .............-.
T Consensus       141 ~~G~lyr~~p-~g~~~~l~~~~--~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG  217 (307)
T COG3386         141 PTGSLYRVDP-DGGVVRLLDDD--LTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDG  217 (307)
T ss_pred             CcceEEEEcC-CCCEEEeecCc--EEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCc
Confidence             133444444 45544444432  3345789999999887777654 7788887752  111   111111112334445


Q ss_pred             EEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCC-CCc-EEEEecCC
Q 040370          159 AVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSP-AEA-AFITCGTD  218 (228)
Q Consensus       159 ~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~-~~~-~l~s~~~d  218 (228)
                      ++...++.+.++.....+.|.+|+.. ++.+.... -....+++++|-- +.+ +++|+...
T Consensus       218 ~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~-lP~~~~t~~~FgG~~~~~L~iTs~~~  277 (307)
T COG3386         218 MAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIK-LPVKRPTNPAFGGPDLNTLYITSARS  277 (307)
T ss_pred             eEEeCCCCEEEecccCCceEEEECCC-CcEEEEEE-CCCCCCccceEeCCCcCEEEEEecCC
Confidence            66667777775444322399999987 88888774 3336778888854 444 44444443

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.98  E-value=0.00036  Score=53.43  Aligned_cols=145  Identities=12%  Similarity=0.126  Sum_probs=94.0

Q ss_pred             CCCEEE-EecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCC-------eEEEEecCCeEEEEeCCCCce--
Q 040370           30 SGDFLL-AGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGG-------MYVTASKDGAIRLWDGVSANC--   99 (228)
Q Consensus        30 ~~~~l~-~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-------~l~~~~~dg~v~iwd~~~~~~--   99 (228)
                      +.++|+ .+.....++-.|++.|+.+.....     ...|+-+.+.|+.+       .-+.|-.|..|.-||++-...  
T Consensus       344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~-----~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~k  418 (644)
T KOG2395|consen  344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKF-----EDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNK  418 (644)
T ss_pred             ccceEeeCCCCcCcceeeecccceeeeEeec-----cCCcceeeccCCcchhcccccccEEeecCCceEEecccccCcce
Confidence            334444 455556678888899988776655     33477788888643       234566788899999884332  


Q ss_pred             eeEEec--ccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCCe
Q 040370          100 VRSIVG--AHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNE  177 (228)
Q Consensus       100 ~~~~~~--~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  177 (228)
                      +...+.  ........|.+-..+ .+++.|+.+|.||+||- .+....+.. +.-..++..+..+.+|.++++++.  ..
T Consensus       419 l~~~q~kqy~~k~nFsc~aTT~s-G~IvvgS~~GdIRLYdr-i~~~AKTAl-PgLG~~I~hVdvtadGKwil~Tc~--ty  493 (644)
T KOG2395|consen  419 LAVVQSKQYSTKNNFSCFATTES-GYIVVGSLKGDIRLYDR-IGRRAKTAL-PGLGDAIKHVDVTADGKWILATCK--TY  493 (644)
T ss_pred             eeeeeccccccccccceeeecCC-ceEEEeecCCcEEeehh-hhhhhhhcc-cccCCceeeEEeeccCcEEEEecc--cE
Confidence            111111  111334455555544 47999999999999996 444433322 225677888888899999999875  67


Q ss_pred             EEEEEcC
Q 040370          178 IVIWDAL  184 (228)
Q Consensus       178 i~i~d~~  184 (228)
                      +.+.+..
T Consensus       494 LlLi~t~  500 (644)
T KOG2395|consen  494 LLLIDTL  500 (644)
T ss_pred             EEEEEEe
Confidence            7777653

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.92  E-value=0.0014  Score=50.42  Aligned_cols=146  Identities=8%  Similarity=0.046  Sum_probs=93.8

Q ss_pred             CCCCeE-EEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCC-------EEEEeeCCCeEEEEEccCCee--E
Q 040370           75 STGGMY-VTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQR-------FVLSCGKDSTVKLWEVSSGRL--V  144 (228)
Q Consensus        75 ~~~~~l-~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-------~l~~~~~d~~i~~wd~~~~~~--~  144 (228)
                      .+.++| .++.....++-.|++.|+.+..+..+.   .|+-+.+.|+.+       .-+.|-.|..|.-||.|-...  +
T Consensus       343 ~dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~---di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl  419 (644)
T KOG2395|consen  343 ADSNLILMDGGEQDKLYKLDIERGKIVEEWKFED---DINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKL  419 (644)
T ss_pred             cccceEeeCCCCcCcceeeecccceeeeEeeccC---CcceeeccCCcchhcccccccEEeecCCceEEecccccCccee
Confidence            344444 455556678888999999999998853   377777887643       234566788899999984322  1


Q ss_pred             EEEeccee-eeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEE
Q 040370          145 KQYLGATH-TQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRF  223 (228)
Q Consensus       145 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~v  223 (228)
                      ...+.+.- ...-+.+.-.....+++++ +.+|.|++||- .+....+...+...+|..+..+.+|++++..+ +..+.+
T Consensus       420 ~~~q~kqy~~k~nFsc~aTT~sG~Ivvg-S~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlL  496 (644)
T KOG2395|consen  420 AVVQSKQYSTKNNFSCFATTESGYIVVG-SLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATC-KTYLLL  496 (644)
T ss_pred             eeeeccccccccccceeeecCCceEEEe-ecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEec-ccEEEE
Confidence            11111111 1111222222344566664 44799999995 77766666678889999999999999877655 344555


Q ss_pred             eee
Q 040370          224 WKE  226 (228)
Q Consensus       224 wd~  226 (228)
                      -++
T Consensus       497 i~t  499 (644)
T KOG2395|consen  497 IDT  499 (644)
T ss_pred             EEE
Confidence            443

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=97.91  E-value=0.0039  Score=45.23  Aligned_cols=145  Identities=17%  Similarity=0.115  Sum_probs=84.5

Q ss_pred             CCCEEEEecCCCeEEEEEccc-ceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCCCceeeEEe----
Q 040370           30 SGDFLLAGTDHPIAHLYDVNT-FQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIV----  104 (228)
Q Consensus        30 ~~~~l~~~~~d~~i~vw~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~----  104 (228)
                      .++.|+.|+++| +.+++... ........      ...|..+...|+-+.+++-+ |+.+.++++..-.......    
T Consensus         6 ~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~------~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~   77 (275)
T PF00780_consen    6 WGDRLLVGTEDG-LYVYDLSDPSKPTRILK------LSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAF   77 (275)
T ss_pred             CCCEEEEEECCC-EEEEEecCCccceeEee------cceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccc
Confidence            678899999998 88999832 22222221      34499999999877666654 5999999987654333110    


Q ss_pred             --------cccccceeEEEE--ECCCCCEEEEeeCCCeEEEEEccCC-----eeEEEEecceeeeeeeEEEECCCCcEEE
Q 040370          105 --------GAHGTAEATSAN--FTKDQRFVLSCGKDSTVKLWEVSSG-----RLVKQYLGATHTQLRFQAVFNDTEEFVL  169 (228)
Q Consensus       105 --------~~~~~~~i~~~~--~~~~~~~l~~~~~d~~i~~wd~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (228)
                              .......+...+  -...+...+.....+.|.+|.....     +....+.   -+..+..+.|.  ++.++
T Consensus        78 ~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~---lp~~~~~i~~~--~~~i~  152 (275)
T PF00780_consen   78 PKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS---LPDPPSSIAFL--GNKIC  152 (275)
T ss_pred             cccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE---cCCCcEEEEEe--CCEEE
Confidence                    001122333333  1223334444445568999888653     2334443   34555666666  44444


Q ss_pred             EeeCCCCeEEEEEcCCccee
Q 040370          170 SIDEPSNEIVIWDALTAEKV  189 (228)
Q Consensus       170 ~~~~~d~~i~i~d~~~~~~~  189 (228)
                      .+..  ....+.|+.++...
T Consensus       153 v~~~--~~f~~idl~~~~~~  170 (275)
T PF00780_consen  153 VGTS--KGFYLIDLNTGSPS  170 (275)
T ss_pred             EEeC--CceEEEecCCCCce
Confidence            4333  56778888766543

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PHA02713 hypothetical protein; Provisional

Probab=97.90  E-value=0.0021  Score=51.44  Aligned_cols=186  Identities=9%  Similarity=0.014  Sum_probs=90.2

Q ss_pred             CCCEEEEecCC------CeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCC-----eEEEEeCCCCc
Q 040370           30 SGDFLLAGTDH------PIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDG-----AIRLWDGVSAN   98 (228)
Q Consensus        30 ~~~~l~~~~~d------~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-----~v~iwd~~~~~   98 (228)
                      ++..++.|+.+      ..+..||..+..-......+..  ......+..  +++..+.|+.++     .+..||..+.+
T Consensus       303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~--R~~~~~~~~--~g~IYviGG~~~~~~~~sve~Ydp~~~~  378 (557)
T PHA02713        303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKN--RCRFSLAVI--DDTIYAIGGQNGTNVERTIECYTMGDDK  378 (557)
T ss_pred             CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcch--hhceeEEEE--CCEEEEECCcCCCCCCceEEEEECCCCe
Confidence            56666777743      3477788877653322222211  112222222  577777887654     48889988764


Q ss_pred             eeeEEecccccceeEEEEECCCCCEEEEeeCCC-----------------------eEEEEEccCCeeEEEEecceeeee
Q 040370           99 CVRSIVGAHGTAEATSANFTKDQRFVLSCGKDS-----------------------TVKLWEVSSGRLVKQYLGATHTQL  155 (228)
Q Consensus        99 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~-----------------------~i~~wd~~~~~~~~~~~~~~~~~~  155 (228)
                      -...-...........+.+  +++..+.|+.++                       .+..||.++.+....-... ....
T Consensus       379 W~~~~~mp~~r~~~~~~~~--~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~-~~r~  455 (557)
T PHA02713        379 WKMLPDMPIALSSYGMCVL--DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFW-TGTI  455 (557)
T ss_pred             EEECCCCCcccccccEEEE--CCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCC-cccc
Confidence            3321111111111112222  577777777542                       4778888776543221111 1111


Q ss_pred             eeEEEECCCCcEEEEeeCCC-----CeEEEEEcCC-ccee--EEeecCCCCCcEEEEeCCCCcEEEEecCCC--CEEEee
Q 040370          156 RFQAVFNDTEEFVLSIDEPS-----NEIVIWDALT-AEKV--AKWSSNHIGAPRWIEHSPAEAAFITCGTDR--SVRFWK  225 (228)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~d-----~~i~i~d~~~-~~~~--~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg--~i~vwd  225 (228)
                      ...++. -++...+.+|..+     ..+..||..+ .+-.  ..+ .........+.+  +++..++||.||  .+..||
T Consensus       456 ~~~~~~-~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m-~~~r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd  531 (557)
T PHA02713        456 RPGVVS-HKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTT-ESRLSALHTILH--DNTIMMLHCYESYMLQDTFN  531 (557)
T ss_pred             cCcEEE-ECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEcccc-CcccccceeEEE--CCEEEEEeeecceeehhhcC
Confidence            111221 2344334433311     2467899876 3322  222 111222222333  788889999888  555565


Q ss_pred             e
Q 040370          226 E  226 (228)
Q Consensus       226 ~  226 (228)
                      +
T Consensus       532 ~  532 (557)
T PHA02713        532 V  532 (557)
T ss_pred             c
Confidence            4

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.88  E-value=0.0066  Score=46.76  Aligned_cols=170  Identities=12%  Similarity=0.103  Sum_probs=83.7

Q ss_pred             eEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCCCceeeEEeccccc-----ceeEEEE
Q 040370           42 IAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGT-----AEATSAN  116 (228)
Q Consensus        42 ~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~-----~~i~~~~  116 (228)
                      .|.||+.. |+.+......    .+.|.++.|+.+. .|+.-..||.++++|+. |+....+......     ..+....
T Consensus        62 ~I~iys~s-G~ll~~i~w~----~~~iv~~~wt~~e-~LvvV~~dG~v~vy~~~-G~~~fsl~~~i~~~~v~e~~i~~~~  134 (410)
T PF04841_consen   62 SIQIYSSS-GKLLSSIPWD----SGRIVGMGWTDDE-ELVVVQSDGTVRVYDLF-GEFQFSLGEEIEEEKVLECRIFAIW  134 (410)
T ss_pred             EEEEECCC-CCEeEEEEEC----CCCEEEEEECCCC-eEEEEEcCCEEEEEeCC-CceeechhhhccccCcccccccccc
Confidence            48888865 4444444332    3789999999765 46666789999999986 3331111110001     1122223


Q ss_pred             ECCCCCEEEEeeCCCeEEEEEccCCe-eEEEEec-ce-------eeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcc
Q 040370          117 FTKDQRFVLSCGKDSTVKLWEVSSGR-LVKQYLG-AT-------HTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAE  187 (228)
Q Consensus       117 ~~~~~~~l~~~~~d~~i~~wd~~~~~-~~~~~~~-~~-------~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~  187 (228)
                      +..+|-.+++  .++.+.+..--... ....+.. +.       .........+..+....+.... ++.+.+.+-...+
T Consensus       135 ~~~~GivvLt--~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~-g~~i~~i~~~~~~  211 (410)
T PF04841_consen  135 FYKNGIVVLT--GNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLAN-GETIYIIDENSFK  211 (410)
T ss_pred             cCCCCEEEEC--CCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEec-CCEEEEEEccccc
Confidence            3334533333  34444443221111 1111100 00       0000000112223332222222 2444433322211


Q ss_pred             eeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeee
Q 040370          188 KVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKE  226 (228)
Q Consensus       188 ~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~  226 (228)
                      .   +  ...+++..++.||+++++|.-..+|.+.+...
T Consensus       212 ~---i--~~~~~i~~iavSpng~~iAl~t~~g~l~v~ss  245 (410)
T PF04841_consen  212 Q---I--DSDGPIIKIAVSPNGKFIALFTDSGNLWVVSS  245 (410)
T ss_pred             c---c--cCCCCeEEEEECCCCCEEEEEECCCCEEEEEC
Confidence            1   1  23468999999999999999999999887653

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=97.87  E-value=0.004  Score=44.19  Aligned_cols=158  Identities=10%  Similarity=0.116  Sum_probs=92.7

Q ss_pred             ccceeeEEeCCCCC-eEEEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCe-
Q 040370           65 NGAINQVRYSSTGG-MYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGR-  142 (228)
Q Consensus        65 ~~~i~~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~-  142 (228)
                      ...+..++|+|+.+ ++++....+.|...+. +|+.++.+.... ....-.+++..++.++++.-.++.+.++++.... 
T Consensus        21 ~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g-~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~   98 (248)
T PF06977_consen   21 LDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDG-FGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTT   98 (248)
T ss_dssp             -S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS--SSEEEEEE-STTEEEEEETTTTEEEEEEE----T
T ss_pred             cCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCC-CCCceeEEEECCCEEEEEEcCCCcEEEEEEecccc
Confidence            44599999999755 6667778889988886 578888776643 4567788888888887777778999999984321 


Q ss_pred             -----eEEEEe--c-ceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCC---cceeEEe-------ecCCCCCcEEEE
Q 040370          143 -----LVKQYL--G-ATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALT---AEKVAKW-------SSNHIGAPRWIE  204 (228)
Q Consensus       143 -----~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~---~~~~~~~-------~~~~~~~v~~~~  204 (228)
                           ....+.  . .......-.++|++.+..++++-. ..-..+|.++.   .......       .......+.+++
T Consensus        99 ~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE-~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~  177 (248)
T PF06977_consen   99 SLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKE-RKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLS  177 (248)
T ss_dssp             T--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEE-SSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEE
T ss_pred             ccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeC-CCChhhEEEccccCccceeeccccccccccceeccccceE
Confidence                 112222  1 113344678999998777777655 34555666543   2111111       012445688899


Q ss_pred             eCC-CCcEEEEecCCCCEEEee
Q 040370          205 HSP-AEAAFITCGTDRSVRFWK  225 (228)
Q Consensus       205 ~~~-~~~~l~s~~~dg~i~vwd  225 (228)
                      ++| .+.+++.+..+..|...|
T Consensus       178 ~~p~t~~lliLS~es~~l~~~d  199 (248)
T PF06977_consen  178 YDPRTGHLLILSDESRLLLELD  199 (248)
T ss_dssp             EETTTTEEEEEETTTTEEEEE-
T ss_pred             EcCCCCeEEEEECCCCeEEEEC
Confidence            999 456777777777777665

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=97.87  E-value=7.8e-05  Score=37.84  Aligned_cols=34  Identities=24%  Similarity=0.416  Sum_probs=30.1

Q ss_pred             cCcceEEEEEeCCCCEEEEecCCCeEEEEEcccce
Q 040370           18 DTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQ   52 (228)
Q Consensus        18 ~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~   52 (228)
                      ...+|.+++|+|..++||.|+.+|.|.++.+ +++
T Consensus        10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~q   43 (47)
T PF12894_consen   10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQ   43 (47)
T ss_pred             CCCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCc
Confidence            3567999999999999999999999999998 444

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.86  E-value=0.0036  Score=50.28  Aligned_cols=149  Identities=8%  Similarity=0.023  Sum_probs=88.1

Q ss_pred             cceeeEEeCCCCCeEEEEe------cCC--eEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCC-------
Q 040370           66 GAINQVRYSSTGGMYVTAS------KDG--AIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKD-------  130 (228)
Q Consensus        66 ~~i~~~~~~~~~~~l~~~~------~dg--~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-------  130 (228)
                      ..+...+.+|+|+.++...      .|.  .|.+.+. .+.. ..+..   ......-.|+|+|..+++....       
T Consensus       350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~-~~lt~---g~~~t~PsWspDG~~lw~v~dg~~~~~v~  424 (591)
T PRK13616        350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPL-GGVA-VQVLE---GHSLTRPSWSLDADAVWVVVDGNTVVRVI  424 (591)
T ss_pred             cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeC-CCcc-eeeec---CCCCCCceECCCCCceEEEecCcceEEEe
Confidence            4678899999999877654      243  4555564 2222 33332   2237788999998877776533       


Q ss_pred             -----CeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCCeEEE---EEcCCcceeE----EeecCCCC
Q 040370          131 -----STVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVI---WDALTAEKVA----KWSSNHIG  198 (228)
Q Consensus       131 -----~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i---~d~~~~~~~~----~~~~~~~~  198 (228)
                           +.+.+.+++.++...     .....+..+.|+|+|..++....  +.|.+   -....|....    .+...-..
T Consensus       425 ~~~~~gql~~~~vd~ge~~~-----~~~g~Issl~wSpDG~RiA~i~~--g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~  497 (591)
T PRK13616        425 RDPATGQLARTPVDASAVAS-----RVPGPISELQLSRDGVRAAMIIG--GKVYLAVVEQTEDGQYALTNPREVGPGLGD  497 (591)
T ss_pred             ccCCCceEEEEeccCchhhh-----ccCCCcCeEEECCCCCEEEEEEC--CEEEEEEEEeCCCCceeecccEEeecccCC
Confidence                 223333333322211     12345889999999999888764  77777   3433443111    12122333


Q ss_pred             CcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370          199 APRWIEHSPAEAAFITCGTDRSVRFWKEI  227 (228)
Q Consensus       199 ~v~~~~~~~~~~~l~s~~~dg~i~vwd~~  227 (228)
                      .+.++.|.+++.++ .+..++.-.+|.+.
T Consensus       498 ~~~~l~W~~~~~L~-V~~~~~~~~v~~v~  525 (591)
T PRK13616        498 TAVSLDWRTGDSLV-VGRSDPEHPVWYVN  525 (591)
T ss_pred             ccccceEecCCEEE-EEecCCCCceEEEe
Confidence            46889999998855 44555555566643

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.86  E-value=0.0072  Score=46.71  Aligned_cols=116  Identities=11%  Similarity=0.135  Sum_probs=72.6

Q ss_pred             eeeEEeCCCCCeEEEE-ecCC----eEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCC-----------
Q 040370           68 INQVRYSSTGGMYVTA-SKDG----AIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDS-----------  131 (228)
Q Consensus        68 i~~~~~~~~~~~l~~~-~~dg----~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~-----------  131 (228)
                      +....++|++++++.+ +..|    .+++.|+++++.+.....   ......+.|.++++.|+....+.           
T Consensus       126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~---~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~  202 (414)
T PF02897_consen  126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIE---NPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPR  202 (414)
T ss_dssp             EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEE---EEESEEEEECTTSSEEEEEECSTTTSS-CCGCCE
T ss_pred             eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccc---ccccceEEEeCCCCEEEEEEeCcccccccCCCCc
Confidence            3457899999988755 3444    599999999976653322   11223499999988776554332           


Q ss_pred             eEEEEEccCCeeE--EEEecceeeeeeeEEEECCCCcEEEEeeCC--C-CeEEEEEcCCc
Q 040370          132 TVKLWEVSSGRLV--KQYLGATHTQLRFQAVFNDTEEFVLSIDEP--S-NEIVIWDALTA  186 (228)
Q Consensus       132 ~i~~wd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--d-~~i~i~d~~~~  186 (228)
                      .|+.|.+.+...-  ..+...........+..++++++++.....  + ..+.+.|+..+
T Consensus       203 ~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~  262 (414)
T PF02897_consen  203 QVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDG  262 (414)
T ss_dssp             EEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCT
T ss_pred             EEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEecccc
Confidence            4788888765432  333332222225677889999998764432  3 45888888764

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.86  E-value=7.1e-05  Score=61.57  Aligned_cols=104  Identities=17%  Similarity=0.282  Sum_probs=73.4

Q ss_pred             CCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCCCceeeEEecccc-
Q 040370           30 SGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHG-  108 (228)
Q Consensus        30 ~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~-  108 (228)
                      .+..++.|+..|.+-..|+...-..  . ....+..++|++++|+.+|..++.|-.+|.|.+||+..++..+.+..+.+ 
T Consensus        98 ~~~~ivi~Ts~ghvl~~d~~~nL~~--~-~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap  174 (1206)
T KOG2079|consen   98 VVVPIVIGTSHGHVLLSDMTGNLGP--L-HQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAP  174 (1206)
T ss_pred             eeeeEEEEcCchhhhhhhhhcccch--h-hcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCc
Confidence            4567888999999988887653211  1 11112278999999999999999999999999999999988887766421 


Q ss_pred             cceeEEEEECCCCCEEEEeeCCCeEEEEEc
Q 040370          109 TAEATSANFTKDQRFVLSCGKDSTVKLWEV  138 (228)
Q Consensus       109 ~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~  138 (228)
                      ...+.-+.+..++..++++...|.  +|.+
T Consensus       175 ~t~vi~v~~t~~nS~llt~D~~Gs--f~~l  202 (1206)
T KOG2079|consen  175 VTGVIFVGRTSQNSKLLTSDTGGS--FWKL  202 (1206)
T ss_pred             cceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence            122333344445557888887775  5543

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.86  E-value=0.0053  Score=45.11  Aligned_cols=191  Identities=13%  Similarity=0.108  Sum_probs=111.4

Q ss_pred             EEEeCCCC-EEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCCCceeeEE
Q 040370           25 VSFHPSGD-FLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSI  103 (228)
Q Consensus        25 ~~~~~~~~-~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~  103 (228)
                      -.|.++.. ++.+--..+.|.-|+..+++......      .+.+.++..-..+..|+++..  -+.+++.+++.....+
T Consensus        30 P~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~~~~------p~~~~~~~~~d~~g~Lv~~~~--g~~~~~~~~~~~~t~~  101 (307)
T COG3386          30 PVWDPDRGALLWVDILGGRIHRLDPETGKKRVFPS------PGGFSSGALIDAGGRLIACEH--GVRLLDPDTGGKITLL  101 (307)
T ss_pred             ccCcCCCCEEEEEeCCCCeEEEecCCcCceEEEEC------CCCcccceeecCCCeEEEEcc--ccEEEeccCCceeEEe
Confidence            34667666 44455667888888887665332222      233344444334445555533  3666676655553333


Q ss_pred             ecc---cccceeEEEEECCCCCEEEEeeC-----------CCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEE
Q 040370          104 VGA---HGTAEATSANFTKDQRFVLSCGK-----------DSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVL  169 (228)
Q Consensus       104 ~~~---~~~~~i~~~~~~~~~~~l~~~~~-----------d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (228)
                      ...   ......+.....|+|.+-++...           -|.++.+|. .+.....+..  +-.....++|+|+++.++
T Consensus       102 ~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~--~~~~~NGla~SpDg~tly  178 (307)
T COG3386         102 AEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDD--DLTIPNGLAFSPDGKTLY  178 (307)
T ss_pred             ccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecC--cEEecCceEECCCCCEEE
Confidence            221   11244567788888886665443           133444443 4444444433  345567899999999999


Q ss_pred             EeeCCCCeEEEEEcCC--c----ceeEEeecCCCCCcEEEEeCCCCcEEEEecCCC-CEEEeee
Q 040370          170 SIDEPSNEIVIWDALT--A----EKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDR-SVRFWKE  226 (228)
Q Consensus       170 ~~~~~d~~i~i~d~~~--~----~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg-~i~vwd~  226 (228)
                      .+.+..+.|.-|++..  +    +..........+..-.++...+|.+.+++..+| .|.+|+.
T Consensus       179 ~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~p  242 (307)
T COG3386         179 VADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNP  242 (307)
T ss_pred             EEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECC
Confidence            9888778999887752  1    111222123456677788888888776555544 7777764

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=97.80  E-value=0.011  Score=47.07  Aligned_cols=193  Identities=10%  Similarity=0.007  Sum_probs=113.0

Q ss_pred             CCEEEEecCCCeEEEEEcccceEEeeeccceeeeccce-------eeEEeCCCCCeEEEEecCCeEEEEeCCCCceeeEE
Q 040370           31 GDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAI-------NQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSI  103 (228)
Q Consensus        31 ~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i-------~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~  103 (228)
                      +..+++++.++.|.-.|.++|+.+..............       ..+++  .+..++.++.|+.+.-.|.++|+.+-..
T Consensus        69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk~~W~~  146 (527)
T TIGR03075        69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGKVVWSK  146 (527)
T ss_pred             CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCCCEEeec
Confidence            55777777788999999999998776654211000010       11122  2346778888999999999999988765


Q ss_pred             ecccccceeEEEEECC--CCCEEEEee------CCCeEEEEEccCCeeEEEEecceee----------------------
Q 040370          104 VGAHGTAEATSANFTK--DQRFVLSCG------KDSTVKLWEVSSGRLVKQYLGATHT----------------------  153 (228)
Q Consensus       104 ~~~~~~~~i~~~~~~~--~~~~l~~~~------~d~~i~~wd~~~~~~~~~~~~~~~~----------------------  153 (228)
                      ....... -..+.-+|  .+..++.+.      .+|.|.-+|.++|+.+-.+......                      
T Consensus       147 ~~~~~~~-~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~  225 (527)
T TIGR03075       147 KNGDYKA-GYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPG  225 (527)
T ss_pred             ccccccc-cccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCCC
Confidence            5321110 01111122  123455543      2689999999999887665432110                      


Q ss_pred             --------eeeeEEEECCCCcEEEEeeCC----C-----------CeEEEEEcCCcceeEEeecCCCC--------CcEE
Q 040370          154 --------QLRFQAVFNDTEEFVLSIDEP----S-----------NEIVIWDALTAEKVAKWSSNHIG--------APRW  202 (228)
Q Consensus       154 --------~~~~~~~~~~~~~~~~~~~~~----d-----------~~i~i~d~~~~~~~~~~~~~~~~--------~v~~  202 (228)
                              ..-....+.+....++...++    +           ..|.-.|+++|+..-.++..|..        +..=
T Consensus       226 ~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l  305 (527)
T TIGR03075       226 DAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMIL  305 (527)
T ss_pred             CccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcEE
Confidence                    000123556656655554432    1           26777899999987776432211        1111


Q ss_pred             EEeCCCCc---EEEEecCCCCEEEeee
Q 040370          203 IEHSPAEA---AFITCGTDRSVRFWKE  226 (228)
Q Consensus       203 ~~~~~~~~---~l~s~~~dg~i~vwd~  226 (228)
                      +....+|+   .++.+..+|.+.+.|.
T Consensus       306 ~d~~~~G~~~~~v~~~~K~G~~~vlDr  332 (527)
T TIGR03075       306 FDLKKDGKPRKLLAHADRNGFFYVLDR  332 (527)
T ss_pred             EEeccCCcEEEEEEEeCCCceEEEEEC
Confidence            22324565   7788899999988875

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.76  E-value=0.0065  Score=43.32  Aligned_cols=148  Identities=14%  Similarity=0.203  Sum_probs=92.6

Q ss_pred             cceeeEEeCCCC-CeEEEEecCCe-EEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCC-----CeEEEEEc
Q 040370           66 GAINQVRYSSTG-GMYVTASKDGA-IRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKD-----STVKLWEV  138 (228)
Q Consensus        66 ~~i~~~~~~~~~-~~l~~~~~dg~-v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----~~i~~wd~  138 (228)
                      ..-..++|+|.. .-++.+-.-|+ ..++|.+..+.+..+......-.--.=.|+|||.+|+..-.|     |.|-+||.
T Consensus        68 aR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~  147 (366)
T COG3490          68 ARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDA  147 (366)
T ss_pred             cccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEec
Confidence            445678898854 44555555554 678999888777666544322222234699999999876544     68999999


Q ss_pred             cCC-eeEEEEecceeeeeeeEEEECCCCcEEEEeeCC-----------------CCeEEEEEcCCcceeEEeec---CCC
Q 040370          139 SSG-RLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEP-----------------SNEIVIWDALTAEKVAKWSS---NHI  197 (228)
Q Consensus       139 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------d~~i~i~d~~~~~~~~~~~~---~~~  197 (228)
                      +.+ +.+..+..  +......+.+.++|+.++..++.                 ..++.+.|..+|+.+.+...   .+.
T Consensus       148 r~~fqrvgE~~t--~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~  225 (366)
T COG3490         148 REGFQRVGEFST--HGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQ  225 (366)
T ss_pred             ccccceeccccc--CCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhh
Confidence            853 22333333  55566778889999998886541                 12344445455554433211   244


Q ss_pred             CCcEEEEeCCCCcEEEEe
Q 040370          198 GAPRWIEHSPAEAAFITC  215 (228)
Q Consensus       198 ~~v~~~~~~~~~~~l~s~  215 (228)
                      -.+..++..+||..++.+
T Consensus       226 lSiRHld~g~dgtvwfgc  243 (366)
T COG3490         226 LSIRHLDIGRDGTVWFGC  243 (366)
T ss_pred             cceeeeeeCCCCcEEEEE
Confidence            567778888888766554

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.74  E-value=0.00027  Score=58.41  Aligned_cols=104  Identities=15%  Similarity=0.166  Sum_probs=71.8

Q ss_pred             CCCeEEEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEeccee-ee
Q 040370           76 TGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATH-TQ  154 (228)
Q Consensus        76 ~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~-~~  154 (228)
                      .+..++.|+..|.+...|+... .-.-..+.+...+|++++|+.+|..++.|-.+|.|.+||+..++..+.+..+.+ ..
T Consensus        98 ~~~~ivi~Ts~ghvl~~d~~~n-L~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t  176 (1206)
T KOG2079|consen   98 VVVPIVIGTSHGHVLLSDMTGN-LGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVT  176 (1206)
T ss_pred             eeeeEEEEcCchhhhhhhhhcc-cchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccc
Confidence            3556888999999999997653 221233344578999999999999999999999999999999888877754332 22


Q ss_pred             eeeEEEECCCCcEEEEeeCCCCeEEEEEc
Q 040370          155 LRFQAVFNDTEEFVLSIDEPSNEIVIWDA  183 (228)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~d~~i~i~d~  183 (228)
                      .+....+..++..++++.. .|.  +|.+
T Consensus       177 ~vi~v~~t~~nS~llt~D~-~Gs--f~~l  202 (1206)
T KOG2079|consen  177 GVIFVGRTSQNSKLLTSDT-GGS--FWKL  202 (1206)
T ss_pred             eEEEEEEeCCCcEEEEccC-CCc--eEEE
Confidence            3344444445555555433 354  5543

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=97.70  E-value=0.00019  Score=36.40  Aligned_cols=33  Identities=9%  Similarity=0.215  Sum_probs=29.6

Q ss_pred             ccceeeEEeCCCCCeEEEEecCCeEEEEeCCCCc
Q 040370           65 NGAINQVRYSSTGGMYVTASKDGAIRLWDGVSAN   98 (228)
Q Consensus        65 ~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~   98 (228)
                      ...|.+++|+|...++|.++.+|.|.++.+ +++
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~q   43 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQ   43 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCc
Confidence            567999999999999999999999999998 444

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.66  E-value=0.016  Score=44.76  Aligned_cols=178  Identities=10%  Similarity=0.117  Sum_probs=90.0

Q ss_pred             cceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccce-----eeEEeCCCCCeEEEEecCCeEEEEeC
Q 040370           20 HNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAI-----NQVRYSSTGGMYVTASKDGAIRLWDG   94 (228)
Q Consensus        20 ~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i-----~~~~~~~~~~~l~~~~~dg~v~iwd~   94 (228)
                      +.|.++.|+.+ ..|++-..||.++++|+....   .+.....-....|     ....+..+|-.+++  .++.+.+.+-
T Consensus        81 ~~iv~~~wt~~-e~LvvV~~dG~v~vy~~~G~~---~fsl~~~i~~~~v~e~~i~~~~~~~~GivvLt--~~~~~~~v~n  154 (410)
T PF04841_consen   81 GRIVGMGWTDD-EELVVVQSDGTVRVYDLFGEF---QFSLGEEIEEEKVLECRIFAIWFYKNGIVVLT--GNNRFYVVNN  154 (410)
T ss_pred             CCEEEEEECCC-CeEEEEEcCCEEEEEeCCCce---eechhhhccccCcccccccccccCCCCEEEEC--CCCeEEEEeC
Confidence            78999999875 455667789999999986333   1111110002222     22233335533333  3444444432


Q ss_pred             CCCc-eeeEEecc---cc----cceeEE-EEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCC
Q 040370           95 VSAN-CVRSIVGA---HG----TAEATS-ANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTE  165 (228)
Q Consensus        95 ~~~~-~~~~~~~~---~~----~~~i~~-~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (228)
                      .... ..+.+...   ..    ...... ..++.+....+....++.+.+.+-...+.   +.   ....+..++.+|++
T Consensus       155 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i~---~~~~i~~iavSpng  228 (410)
T PF04841_consen  155 IDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ---ID---SDGPIIKIAVSPNG  228 (410)
T ss_pred             ccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc---cc---CCCCeEEEEECCCC
Confidence            1111 11111110   00    000000 12333444444444445555443222111   11   23467899999999


Q ss_pred             cEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCc
Q 040370          166 EFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEA  210 (228)
Q Consensus       166 ~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~  210 (228)
                      ++++.-.. +|.+.+....-.+....+...-......+.|.-+..
T Consensus       229 ~~iAl~t~-~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~da  272 (410)
T PF04841_consen  229 KFIALFTD-SGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDA  272 (410)
T ss_pred             CEEEEEEC-CCCEEEEECcccceeEEeecCcCCCCcEEEEECCCc
Confidence            99988766 699988876656666555444445666777765443

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=97.63  E-value=0.0083  Score=44.99  Aligned_cols=164  Identities=15%  Similarity=0.093  Sum_probs=78.1

Q ss_pred             EcccceEEeeecccee-eeccceeeEEeCCCCCeEEEEec-C--CeEEEEeCCCCceeeEEecccccceeEEEEECCCCC
Q 040370           47 DVNTFQCYLSANVPEI-SVNGAINQVRYSSTGGMYVTASK-D--GAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQR  122 (228)
Q Consensus        47 ~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~-d--g~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  122 (228)
                      |..+|..+..+..... .|.-..+.=+|.++|+.|+.++. |  ..+.+.|+.+++..+......  .......++|+++
T Consensus        16 D~~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g--~~~~g~~~s~~~~   93 (386)
T PF14583_consen   16 DPDTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPG--DNTFGGFLSPDDR   93 (386)
T ss_dssp             -TTT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS---B-TTT-EE-TTSS
T ss_pred             CCCCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCC--CCccceEEecCCC
Confidence            5556655554443322 11233344567888876665554 4  457777998888776655432  2222455678888


Q ss_pred             EEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCC---------------------CCeEEEE
Q 040370          123 FVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEP---------------------SNEIVIW  181 (228)
Q Consensus       123 ~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------d~~i~i~  181 (228)
                      .++-...+..++-.|+++.+....+..+..-........+.++..++..-..                     ...|.-.
T Consensus        94 ~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~i  173 (386)
T PF14583_consen   94 ALYYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTI  173 (386)
T ss_dssp             EEEEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEE
T ss_pred             eEEEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEE
Confidence            8776666678999999998765555443222222233334555554432110                     2456667


Q ss_pred             EcCCcceeEEeecCCCCCcEEEEeCCCCcEEEE
Q 040370          182 DALTAEKVAKWSSNHIGAPRWIEHSPAEAAFIT  214 (228)
Q Consensus       182 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s  214 (228)
                      |+++|+....+.  -...+..+.|+|....+++
T Consensus       174 dl~tG~~~~v~~--~~~wlgH~~fsP~dp~li~  204 (386)
T PF14583_consen  174 DLKTGERKVVFE--DTDWLGHVQFSPTDPTLIM  204 (386)
T ss_dssp             ETTT--EEEEEE--ESS-EEEEEEETTEEEEEE
T ss_pred             ECCCCceeEEEe--cCccccCcccCCCCCCEEE
Confidence            888877655552  3446677889985444433

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=97.61  E-value=0.024  Score=45.66  Aligned_cols=180  Identities=13%  Similarity=0.086  Sum_probs=91.4

Q ss_pred             CCCEEEEecCC------CeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCe-----EEEEeCCCCc
Q 040370           30 SGDFLLAGTDH------PIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGA-----IRLWDGVSAN   98 (228)
Q Consensus        30 ~~~~l~~~~~d------~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~-----v~iwd~~~~~   98 (228)
                      ++...++|+.|      .++..||...++-.........  .........  +|...+.|+.||.     +-.||.++.+
T Consensus       332 ~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~--R~~~~v~~l--~g~iYavGG~dg~~~l~svE~YDp~~~~  407 (571)
T KOG4441|consen  332 NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTK--RSDFGVAVL--DGKLYAVGGFDGEKSLNSVECYDPVTNK  407 (571)
T ss_pred             CCEEEEEccccCCCcccceEEEecCCCCceeccCCccCc--cccceeEEE--CCEEEEEeccccccccccEEEecCCCCc
Confidence            55677888888      3677888877763332222211  111222222  6788889998864     7778877654


Q ss_pred             eeeEEecccccceeEEEEECCCCCEEEEeeCCC------eEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEee
Q 040370           99 CVRSIVGAHGTAEATSANFTKDQRFVLSCGKDS------TVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSID  172 (228)
Q Consensus        99 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~------~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (228)
                      ....-.........-...  -++...++|+.++      .+..||..+.+....-......... .++.  -+..+++.|
T Consensus       408 W~~va~m~~~r~~~gv~~--~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~-g~a~--~~~~iYvvG  482 (571)
T KOG4441|consen  408 WTPVAPMLTRRSGHGVAV--LGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGF-GVAV--LNGKIYVVG  482 (571)
T ss_pred             ccccCCCCcceeeeEEEE--ECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccc-eEEE--ECCEEEEEC
Confidence            332221111011111122  2577788888554      5778888876543322211111111 1111  234444444


Q ss_pred             CCCC-----eEEEEEcCCcceeEEeecC-CCCCcEEEEeCCCCcEEEEecCCCC
Q 040370          173 EPSN-----EIVIWDALTAEKVAKWSSN-HIGAPRWIEHSPAEAAFITCGTDRS  220 (228)
Q Consensus       173 ~~d~-----~i~i~d~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~dg~  220 (228)
                      +.|+     ++..||..+.+-...-... ....+-...+  ++...+.||.||.
T Consensus       483 G~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~--~~~ly~vGG~~~~  534 (571)
T KOG4441|consen  483 GFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVVL--GGKLYAVGGFDGN  534 (571)
T ss_pred             CccCCCccceEEEEcCCCCceeEcccCccccccccEEEE--CCEEEEEecccCc
Confidence            4444     3777888776544332111 1222222222  6777888887764

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=97.52  E-value=0.00011  Score=50.00  Aligned_cols=106  Identities=8%  Similarity=0.129  Sum_probs=58.0

Q ss_pred             CCeEEEEecCCeEEEEeCCCCceeeEEeccccccee-EEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeee
Q 040370           77 GGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEA-TSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQL  155 (228)
Q Consensus        77 ~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i-~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~  155 (228)
                      +..++.|+.+|.|.+|+.............. ...+ ..+.-..++.+..+++.||.|+.|++.-.+.+.....+.. ..
T Consensus        70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~-~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~-~~  147 (238)
T KOG2444|consen   70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSG-EESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNF-ES  147 (238)
T ss_pred             CceEEeecccceEEEecCCccchHHHhhhcc-cccceeccccccccceeEEeccCCceeeeccccCceeeeeccccC-CC
Confidence            4578999999999999976322111111111 1222 2233333566889999999999999987766655443211 22


Q ss_pred             eeEEEECCCCcEEEEe-eCCCCeEEEEEcC
Q 040370          156 RFQAVFNDTEEFVLSI-DEPSNEIVIWDAL  184 (228)
Q Consensus       156 ~~~~~~~~~~~~~~~~-~~~d~~i~i~d~~  184 (228)
                      .........++++..+ -+.|..++.|++.
T Consensus       148 ~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve  177 (238)
T KOG2444|consen  148 GEELIVVGSDEFLKIADTSHDRVLKKWNVE  177 (238)
T ss_pred             cceeEEecCCceEEeeccccchhhhhcchh
Confidence            2233333333333332 1224555555553

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=97.50  E-value=0.017  Score=46.52  Aligned_cols=112  Identities=14%  Similarity=0.150  Sum_probs=73.6

Q ss_pred             eeeEEeCCCCCeEEEEecCCeEEEEeCCCCceeeEEecccccceeEEEEEC--CCCCEEEEeeCCCeEEEEEcc-----C
Q 040370           68 INQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFT--KDQRFVLSCGKDSTVKLWEVS-----S  140 (228)
Q Consensus        68 i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~l~~~~~d~~i~~wd~~-----~  140 (228)
                      +.-+.-+.-++..++-+....+.|||.+.+........ .....|.++.|.  |+++.+++.+..+.|.+|--.     +
T Consensus        32 ~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f-~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~  110 (631)
T PF12234_consen   32 PSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESF-SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTN  110 (631)
T ss_pred             cceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeee-cCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhc
Confidence            34444555455444444556799999988875444332 226788999886  488999999999999998542     1


Q ss_pred             ----CeeEEEEecce-eeeeeeEEEECCCCcEEEEeeCCCCeEEEEEc
Q 040370          141 ----GRLVKQYLGAT-HTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDA  183 (228)
Q Consensus       141 ----~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~  183 (228)
                          ...+..+.... .+..+....|.++|..++++|   +.+.|+|-
T Consensus       111 ~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG---Nqlfv~dk  155 (631)
T PF12234_consen  111 KGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG---NQLFVFDK  155 (631)
T ss_pred             CCcccceeEEEEeecCCCCCccceeEecCCeEEEEeC---CEEEEECC
Confidence                12333332221 235677888999998887764   67888874

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PHA03098 kelch-like protein; Provisional

Probab=97.39  E-value=0.034  Score=44.64  Aligned_cols=187  Identities=9%  Similarity=0.049  Sum_probs=87.5

Q ss_pred             CCCEEEEecCCC------eEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecC-----CeEEEEeCCCCc
Q 040370           30 SGDFLLAGTDHP------IAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKD-----GAIRLWDGVSAN   98 (228)
Q Consensus        30 ~~~~l~~~~~d~------~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~v~iwd~~~~~   98 (228)
                      ++..++.|+.++      .+..||..+.+-......+..  ......+..  +++.++.|+.+     ..+..||..+++
T Consensus       294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~--R~~~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~~~~  369 (534)
T PHA03098        294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYP--RKNPGVTVF--NNRIYVIGGIYNSISLNTVESWKPGESK  369 (534)
T ss_pred             CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcc--cccceEEEE--CCEEEEEeCCCCCEecceEEEEcCCCCc
Confidence            455666666432      567788877664332222211  122222223  56777777765     357788887665


Q ss_pred             eeeEEecccccceeEEEEECCCCCEEEEeeCC------CeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEee
Q 040370           99 CVRSIVGAHGTAEATSANFTKDQRFVLSCGKD------STVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSID  172 (228)
Q Consensus        99 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d------~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (228)
                      ....-.... ...-.+++. -+++..+.|+.+      ..+..||+.+.+....-..+ ......++.. .++...+.+|
T Consensus       370 W~~~~~lp~-~r~~~~~~~-~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p-~~r~~~~~~~-~~~~iyv~GG  445 (534)
T PHA03098        370 WREEPPLIF-PRYNPCVVN-VNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLP-ISHYGGCAIY-HDGKIYVIGG  445 (534)
T ss_pred             eeeCCCcCc-CCccceEEE-ECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCC-ccccCceEEE-ECCEEEEECC
Confidence            332211111 111112222 256666777632      35888998876543321111 1111111222 2344444433


Q ss_pred             CCC-------CeEEEEEcCCcceeEEeecCC-CCCcEEEEeCCCCcEEEEecCC-----CCEEEeee
Q 040370          173 EPS-------NEIVIWDALTAEKVAKWSSNH-IGAPRWIEHSPAEAAFITCGTD-----RSVRFWKE  226 (228)
Q Consensus       173 ~~d-------~~i~i~d~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~s~~~d-----g~i~vwd~  226 (228)
                      ..+       ..+.+||..+.+-...-.... ......+.+  ++..++.||.+     +.+.+||+
T Consensus       446 ~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~  510 (534)
T PHA03098        446 ISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF--NNKIYVVGGDKYEYYINEIEVYDD  510 (534)
T ss_pred             ccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEE--CCEEEEEcCCcCCcccceeEEEeC
Confidence            211       238888987664322110011 111122222  67777777754     35667764

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=97.38  E-value=0.03  Score=41.09  Aligned_cols=153  Identities=14%  Similarity=0.143  Sum_probs=81.4

Q ss_pred             ccceeeEEeCCCCCeEEEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEc-cCCee
Q 040370           65 NGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEV-SSGRL  143 (228)
Q Consensus        65 ~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~-~~~~~  143 (228)
                      .+.+..+..+++|+++++++....+.-||.-... -...... ....|.++.|.|++...+.+ ..|.|++=+. ...+.
T Consensus       144 ~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~-w~~~~r~-~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~  220 (302)
T PF14870_consen  144 SGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTT-WQPHNRN-SSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGET  220 (302)
T ss_dssp             ---EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS--EEEE---SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEE
T ss_pred             cceeEeEEECCCCcEEEEECcccEEEEecCCCcc-ceEEccC-ccceehhceecCCCCEEEEe-CCcEEEEccCCCCccc
Confidence            5678888899999999888776667788754322 2222221 26789999999998765544 8898988772 22222


Q ss_pred             EEE--EecceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeec--CCCCCcEEEEeCCCCcEEEEecCCC
Q 040370          144 VKQ--YLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSS--NHIGAPRWIEHSPAEAAFITCGTDR  219 (228)
Q Consensus       144 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~s~~~dg  219 (228)
                      -..  .........+..+++.+++...+++++  |.+ +.....|+.-.+...  .-......+.|.++.+-++. +.+|
T Consensus       221 w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~--G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~l-G~~G  296 (302)
T PF14870_consen  221 WSEPIIPIKTNGYGILDLAYRPPNEIWAVGGS--GTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVL-GQDG  296 (302)
T ss_dssp             E---B-TTSS--S-EEEEEESSSS-EEEEEST--T-E-EEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE--STT
T ss_pred             cccccCCcccCceeeEEEEecCCCCEEEEeCC--ccE-EEeCCCCccceECccccCCCCceEEEEEcCCCceEEE-CCCc
Confidence            111  111113334688899988777776554  544 344456665555432  33556888999766555554 5688


Q ss_pred             CEEEe
Q 040370          220 SVRFW  224 (228)
Q Consensus       220 ~i~vw  224 (228)
                      .+.-|
T Consensus       297 ~ll~~  301 (302)
T PF14870_consen  297 VLLRY  301 (302)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            77554

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=97.36  E-value=0.032  Score=41.21  Aligned_cols=159  Identities=8%  Similarity=0.009  Sum_probs=91.0

Q ss_pred             CEEEEecCCCeEEEEEcc-cceEEeeeccceeeeccc-eeeEEeCCCCCeEEEEecCCeEEEEeCCCCcee--eEEeccc
Q 040370           32 DFLLAGTDHPIAHLYDVN-TFQCYLSANVPEISVNGA-INQVRYSSTGGMYVTASKDGAIRLWDGVSANCV--RSIVGAH  107 (228)
Q Consensus        32 ~~l~~~~~d~~i~vw~~~-~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~--~~~~~~~  107 (228)
                      +.|.+-|.||.+.-..+. .|+..............+ +..-++...+..++--+.+|.|+--|+......  ..+....
T Consensus       148 ~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t  227 (342)
T PF06433_consen  148 RGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLT  227 (342)
T ss_dssp             TEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-
T ss_pred             CceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccC
Confidence            457788889999999887 454432221110000111 222334444445555778899999888655422  2221110


Q ss_pred             --------ccceeEEEEECCCCCEEEEeeC---C-------CeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCc-EE
Q 040370          108 --------GTAEATSANFTKDQRFVLSCGK---D-------STVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEE-FV  168 (228)
Q Consensus       108 --------~~~~i~~~~~~~~~~~l~~~~~---d-------~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  168 (228)
                              ..+...-+++++..+.|+.--.   +       ..|.++|+.+++.+.++..   ...+.++..+.+.. .+
T Consensus       228 ~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l---~~~~~Si~Vsqd~~P~L  304 (342)
T PF06433_consen  228 DAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL---EHPIDSIAVSQDDKPLL  304 (342)
T ss_dssp             HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE---EEEESEEEEESSSS-EE
T ss_pred             ccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC---CCccceEEEccCCCcEE
Confidence                    0122344677775555544321   1       2588999999999999874   23344666666554 56


Q ss_pred             EEeeCCCCeEEEEEcCCcceeEEee
Q 040370          169 LSIDEPSNEIVIWDALTAEKVAKWS  193 (228)
Q Consensus       169 ~~~~~~d~~i~i~d~~~~~~~~~~~  193 (228)
                      ++....++.+.+||..+|+.+.+..
T Consensus       305 ~~~~~~~~~l~v~D~~tGk~~~~~~  329 (342)
T PF06433_consen  305 YALSAGDGTLDVYDAATGKLVRSIE  329 (342)
T ss_dssp             EEEETTTTEEEEEETTT--EEEEE-
T ss_pred             EEEcCCCCeEEEEeCcCCcEEeehh
Confidence            5555557999999999999988873

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=97.34  E-value=0.038  Score=41.62  Aligned_cols=139  Identities=12%  Similarity=0.029  Sum_probs=73.3

Q ss_pred             EEeCCCCEEEEecC---CCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCCCceeeE
Q 040370           26 SFHPSGDFLLAGTD---HPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRS  102 (228)
Q Consensus        26 ~~~~~~~~l~~~~~---d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~  102 (228)
                      +|.++|+.|+.++.   ...+.+.|+.+++..+.....    ........++|+.+.++-...+..|+-.|+++.+....
T Consensus        42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~----g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~v  117 (386)
T PF14583_consen   42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGP----GDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVV  117 (386)
T ss_dssp             -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-----B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEE
T ss_pred             CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCC----CCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEE
Confidence            45678877765544   456777788888876655432    12223466778888776665667899999999876555


Q ss_pred             EecccccceeEEEEE--CCCCCEEEEee----------------------CCCeEEEEEccCCeeEEEEecceeeeeeeE
Q 040370          103 IVGAHGTAEATSANF--TKDQRFVLSCG----------------------KDSTVKLWEVSSGRLVKQYLGATHTQLRFQ  158 (228)
Q Consensus       103 ~~~~~~~~~i~~~~~--~~~~~~l~~~~----------------------~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~  158 (228)
                      ...+  ...+-...|  +.++..++-.-                      -...|.-.|+++|+....+.   .....--
T Consensus       118 y~~p--~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~---~~~wlgH  192 (386)
T PF14583_consen  118 YEVP--DDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFE---DTDWLGH  192 (386)
T ss_dssp             EE----TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEE---ESS-EEE
T ss_pred             EECC--cccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEe---cCccccC
Confidence            5443  333333344  34555543221                      12346666787776554444   4455567


Q ss_pred             EEECCCCcEEEEeeC
Q 040370          159 AVFNDTEEFVLSIDE  173 (228)
Q Consensus       159 ~~~~~~~~~~~~~~~  173 (228)
                      +.++|....+++-+-
T Consensus       193 ~~fsP~dp~li~fCH  207 (386)
T PF14583_consen  193 VQFSPTDPTLIMFCH  207 (386)
T ss_dssp             EEEETTEEEEEEEEE
T ss_pred             cccCCCCCCEEEEec
Confidence            788888887777654

>PHA02713 hypothetical protein; Provisional

Probab=97.32  E-value=0.0088  Score=48.05  Aligned_cols=151  Identities=7%  Similarity=0.048  Sum_probs=73.9

Q ss_pred             CCCEEEEecCCC-----eEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCC-----------------
Q 040370           30 SGDFLLAGTDHP-----IAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDG-----------------   87 (228)
Q Consensus        30 ~~~~l~~~~~d~-----~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-----------------   87 (228)
                      +++..+.|+.++     .+..||..+.+-......+..  ......+..  +++..+.|+.++                 
T Consensus       351 ~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~--r~~~~~~~~--~g~IYviGG~~~~~~~~~~~~~~~~~~~~  426 (557)
T PHA02713        351 DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIA--LSSYGMCVL--DQYIYIIGGRTEHIDYTSVHHMNSIDMEE  426 (557)
T ss_pred             CCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcc--cccccEEEE--CCEEEEEeCCCcccccccccccccccccc
Confidence            566777777653     478899887653332222211  111122222  577777777542                 


Q ss_pred             ------eEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCC------CeEEEEEccC-CeeEEEEecceeee
Q 040370           88 ------AIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKD------STVKLWEVSS-GRLVKQYLGATHTQ  154 (228)
Q Consensus        88 ------~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d------~~i~~wd~~~-~~~~~~~~~~~~~~  154 (228)
                            .+..||.++.+-...-........ .+++ .-+++..+.|+.+      ..+..||.++ .+....-.......
T Consensus       427 ~~~~~~~ve~YDP~td~W~~v~~m~~~r~~-~~~~-~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~  504 (557)
T PHA02713        427 DTHSSNKVIRYDTVNNIWETLPNFWTGTIR-PGVV-SHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLS  504 (557)
T ss_pred             cccccceEEEECCCCCeEeecCCCCccccc-CcEE-EECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccc
Confidence                  477788877654322211111111 1122 2246666677654      2467899887 44432211111111


Q ss_pred             eeeEEEECCCCcEEEEeeCCCC--eEEEEEcCCccee
Q 040370          155 LRFQAVFNDTEEFVLSIDEPSN--EIVIWDALTAEKV  189 (228)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~d~--~i~i~d~~~~~~~  189 (228)
                      ....+..  ++ .+.+.|+.++  .+..||..+.+-.
T Consensus       505 ~~~~~~~--~~-~iyv~Gg~~~~~~~e~yd~~~~~W~  538 (557)
T PHA02713        505 ALHTILH--DN-TIMMLHCYESYMLQDTFNVYTYEWN  538 (557)
T ss_pred             cceeEEE--CC-EEEEEeeecceeehhhcCccccccc
Confidence            1111221  33 4444454456  6777887766544

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=97.28  E-value=0.032  Score=44.94  Aligned_cols=113  Identities=12%  Similarity=0.158  Sum_probs=73.9

Q ss_pred             ceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeC--CCCCeEEEEecCCeEEEEeCCC--
Q 040370           21 NVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYS--STGGMYVTASKDGAIRLWDGVS--   96 (228)
Q Consensus        21 ~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~l~~~~~dg~v~iwd~~~--   96 (228)
                      ...-+.-+.-++..++-+....+.|||...+..........   .+.|.++.|.  |+++.+++.+-...|.++.-..  
T Consensus        31 ~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~---~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~d  107 (631)
T PF12234_consen   31 NPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSE---DDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYD  107 (631)
T ss_pred             CcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecC---CCceeeceeeecCCCCEEEEEEcCcEEEEEEccchh
Confidence            44444445545544455556689999999887544433321   6789999995  5888899999999999985321  


Q ss_pred             -------CceeeEEec-ccccceeEEEEECCCCCEEEEeeCCCeEEEEEc
Q 040370           97 -------ANCVRSIVG-AHGTAEATSANFTKDQRFVLSCGKDSTVKLWEV  138 (228)
Q Consensus        97 -------~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~  138 (228)
                             ...++.+.. .+...+|.+..|.++|..++.+  ++.+.|+|-
T Consensus       108 y~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s--GNqlfv~dk  155 (631)
T PF12234_consen  108 YTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS--GNQLFVFDK  155 (631)
T ss_pred             hhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEe--CCEEEEECC
Confidence                   123333322 1224678899999998765544  356888874

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=97.25  E-value=0.065  Score=42.36  Aligned_cols=122  Identities=12%  Similarity=0.105  Sum_probs=73.1

Q ss_pred             eecCcceEEEEEeCC----CCEEEEecCCCeEEEEEcccc-----eEEeee--ccceeeeccceeeEEeCCCCCeEEEEe
Q 040370           16 IQDTHNVRSVSFHPS----GDFLLAGTDHPIAHLYDVNTF-----QCYLSA--NVPEISVNGAINQVRYSSTGGMYVTAS   84 (228)
Q Consensus        16 ~~~~~~v~~~~~~~~----~~~l~~~~~d~~i~vw~~~~~-----~~~~~~--~~~~~~~~~~i~~~~~~~~~~~l~~~~   84 (228)
                      ++.-+.|..+.|.|-    ...|++......|.||.+...     +.....  ...+ ...---..+.|+|....|+.-.
T Consensus        53 iGqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e-~~pvLpQGCVWHPk~~iL~VLT  131 (671)
T PF15390_consen   53 IGQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIRE-PFPVLPQGCVWHPKKAILTVLT  131 (671)
T ss_pred             eeccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccC-CcccCCCcccccCCCceEEEEe
Confidence            344566999999993    334555566788999998632     111111  1000 0011124577999988777766


Q ss_pred             cCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCC-CeEEEEEcc
Q 040370           85 KDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKD-STVKLWEVS  139 (228)
Q Consensus        85 ~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-~~i~~wd~~  139 (228)
                      ....=.+.+++......+... ...+.|.|.+|.+||+.|+.+-.. =.-++||-.
T Consensus       132 ~~dvSV~~sV~~d~srVkaDi-~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~  186 (671)
T PF15390_consen  132 ARDVSVLPSVHCDSSRVKADI-KTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSA  186 (671)
T ss_pred             cCceeEeeeeeeCCceEEEec-cCCceEEEEEecCcCCEEEEEeCCeEEEEEecCc
Confidence            655555666654433333222 227899999999999987765432 346788843

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=97.13  E-value=0.12  Score=43.19  Aligned_cols=197  Identities=14%  Similarity=0.109  Sum_probs=113.7

Q ss_pred             CCCEEEEecCCCeEEEEEcccceEEeeeccceeeec----cceeeEEeC----------------CCCCeEEEEecCCeE
Q 040370           30 SGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVN----GAINQVRYS----------------STGGMYVTASKDGAI   89 (228)
Q Consensus        30 ~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~----~~i~~~~~~----------------~~~~~l~~~~~dg~v   89 (228)
                      .+..++.++.++.|.-.|..+|+.+..+........    .....+.+.                ..+..++.++.|+.+
T Consensus       193 vgg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~L  272 (764)
T TIGR03074       193 VGDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARL  272 (764)
T ss_pred             ECCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeE
Confidence            356777788889999999999998877654321100    011223331                134478889899999


Q ss_pred             EEEeCCCCceeeEEecccc----------cceeEEEEECC--CCCEEEEeeC----------CCeEEEEEccCCeeEEEE
Q 040370           90 RLWDGVSANCVRSIVGAHG----------TAEATSANFTK--DQRFVLSCGK----------DSTVKLWEVSSGRLVKQY  147 (228)
Q Consensus        90 ~iwd~~~~~~~~~~~~~~~----------~~~i~~~~~~~--~~~~l~~~~~----------d~~i~~wd~~~~~~~~~~  147 (228)
                      .-.|.++|+....+.....          ...-..+.-.|  .+..++.|+.          +|.|+-+|.++|+.+-.+
T Consensus       273 iALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~  352 (764)
T TIGR03074       273 IALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW  352 (764)
T ss_pred             EEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence            9999999998876543110          00000111122  2345666643          688999999999988776


Q ss_pred             eccee-------e---------eeeeEEEECCCCcEEEEeeC-----------------CCCeEEEEEcCCcceeEEeec
Q 040370          148 LGATH-------T---------QLRFQAVFNDTEEFVLSIDE-----------------PSNEIVIWDALTAEKVAKWSS  194 (228)
Q Consensus       148 ~~~~~-------~---------~~~~~~~~~~~~~~~~~~~~-----------------~d~~i~i~d~~~~~~~~~~~~  194 (228)
                      .....       .         ..-....+.+....++...+                 ..+.|.-.|.++|+..-.+..
T Consensus       353 ~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~  432 (764)
T TIGR03074       353 DPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQT  432 (764)
T ss_pred             ecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEecc
Confidence            42100       0         00012334444444333211                 125677778888888777644


Q ss_pred             CCCC--------CcEEEEeCC-CCc---EEEEecCCCCEEEeee
Q 040370          195 NHIG--------APRWIEHSP-AEA---AFITCGTDRSVRFWKE  226 (228)
Q Consensus       195 ~~~~--------~v~~~~~~~-~~~---~l~s~~~dg~i~vwd~  226 (228)
                      .|..        +..=+.+.. +|+   .++.++.+|.+.+.|.
T Consensus       433 ~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr  476 (764)
T TIGR03074       433 VHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDR  476 (764)
T ss_pred             cCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEEC
Confidence            2321        111122322 453   7888999999998885

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PRK10115 protease 2; Provisional

Probab=97.12  E-value=0.12  Score=42.87  Aligned_cols=194  Identities=6%  Similarity=-0.040  Sum_probs=98.8

Q ss_pred             ceEEEEEeCCCCEEEEec-----CCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecC------CeE
Q 040370           21 NVRSVSFHPSGDFLLAGT-----DHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKD------GAI   89 (228)
Q Consensus        21 ~v~~~~~~~~~~~l~~~~-----~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d------g~v   89 (228)
                      .+..+.++|++++|+.+.     +.-.|++.|+.+++.+....      ...-..++|.++++.|+....+      ..|
T Consensus       128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i------~~~~~~~~w~~D~~~~~y~~~~~~~~~~~~v  201 (686)
T PRK10115        128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELL------DNVEPSFVWANDSWTFYYVRKHPVTLLPYQV  201 (686)
T ss_pred             EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccc------cCcceEEEEeeCCCEEEEEEecCCCCCCCEE
Confidence            477789999999988643     33468888998775321111      1111458999998866655432      367


Q ss_pred             EEEeCCCC--ceeeEEecccccceeEEEEECCCCCEEEEeeC---CCeEEEEEcc--CCeeEEEEecceeeeeeeEEEEC
Q 040370           90 RLWDGVSA--NCVRSIVGAHGTAEATSANFTKDQRFVLSCGK---DSTVKLWEVS--SGRLVKQYLGATHTQLRFQAVFN  162 (228)
Q Consensus        90 ~iwd~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---d~~i~~wd~~--~~~~~~~~~~~~~~~~~~~~~~~  162 (228)
                      ..+++.++  +....+.... .........+.++++++..+.   ++.+.+++..  +++....+..  ......... +
T Consensus       202 ~~h~lgt~~~~d~lv~~e~~-~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~-~  277 (686)
T PRK10115        202 WRHTIGTPASQDELVYEEKD-DTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPR--RKDHEYSLD-H  277 (686)
T ss_pred             EEEECCCChhHCeEEEeeCC-CCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEEC--CCCCEEEEE-e
Confidence            77888877  3333333221 111123344547777664443   3578888853  3332222221  111112222 2


Q ss_pred             CCCcEEEEeeC--CCCeEEEEEcCCcceeEEeecCCC-CCcEEEEeCCCCcEEEEecCCCCEEEee
Q 040370          163 DTEEFVLSIDE--PSNEIVIWDALTAEKVAKWSSNHI-GAPRWIEHSPAEAAFITCGTDRSVRFWK  225 (228)
Q Consensus       163 ~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~s~~~dg~i~vwd  225 (228)
                      ..+.+.+.+..  ....|...++........+..... ..+..+.+. .+.++++...+|.-+++-
T Consensus       278 ~~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~  342 (686)
T PRK10115        278 YQHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQ  342 (686)
T ss_pred             CCCEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEE
Confidence            33444444432  123444445442222222322222 367777776 334555555666655543

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=97.12  E-value=0.13  Score=43.22  Aligned_cols=175  Identities=11%  Similarity=0.090  Sum_probs=103.8

Q ss_pred             CeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecC--------------CeEEEEeCCCCceeeEEecc
Q 040370           41 PIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKD--------------GAIRLWDGVSANCVRSIVGA  106 (228)
Q Consensus        41 ~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d--------------g~v~iwd~~~~~~~~~~~~~  106 (228)
                      +.+++-.++.-+.......+.   ......+++.+....+++.+..              ..++++|-++.+.+...+..
T Consensus       693 ~~l~i~tid~iqkl~irtvpl---~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~hef~  769 (1096)
T KOG1897|consen  693 GALTIGTIDEIQKLHIRTVPL---GESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSSHEFE  769 (1096)
T ss_pred             CceEEEEecchhhcceeeecC---CCChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCceeEEeecccc
Confidence            445566555433222222222   4556677777744444444321              24677777666554433221


Q ss_pred             --cccceeEEEEECCC-CCEEEEee----------CCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeC
Q 040370          107 --HGTAEATSANFTKD-QRFVLSCG----------KDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDE  173 (228)
Q Consensus       107 --~~~~~i~~~~~~~~-~~~l~~~~----------~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (228)
                        .....+.++.|..| +.+++.|.          ..|.|.++.+...+.+.......-...+.++.. -+++++++.+ 
T Consensus       770 ~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~-fngkllA~In-  847 (1096)
T KOG1897|consen  770 RNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVE-FNGKLLAGIN-  847 (1096)
T ss_pred             ccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhh-hCCeEEEecC-
Confidence              12334556668877 66777775          357888888877444444433222333333321 2455555543 


Q ss_pred             CCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEE
Q 040370          174 PSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRF  223 (228)
Q Consensus       174 ~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~v  223 (228)
                        ..|++|++.+.+.+..- ..+..++..+...-.+..++.|..-+++.+
T Consensus       848 --~~vrLye~t~~~eLr~e-~~~~~~~~aL~l~v~gdeI~VgDlm~Sitl  894 (1096)
T KOG1897|consen  848 --QSVRLYEWTTERELRIE-CNISNPIIALDLQVKGDEIAVGDLMRSITL  894 (1096)
T ss_pred             --cEEEEEEccccceehhh-hcccCCeEEEEEEecCcEEEEeeccceEEE
Confidence              78999999888666554 678888999998888999999887666654

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=97.11  E-value=0.058  Score=39.17  Aligned_cols=195  Identities=12%  Similarity=0.128  Sum_probs=105.3

Q ss_pred             CcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeecc----------ceeeeccceeeEE--eCCCCCeEEEEecC
Q 040370           19 THNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANV----------PEISVNGAINQVR--YSSTGGMYVTASKD   86 (228)
Q Consensus        19 ~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~----------~~~~~~~~i~~~~--~~~~~~~l~~~~~d   86 (228)
                      ..+|..+...|+-+.|++-+ |+.+.++++...........          ........+...+  -.+.+...+.....
T Consensus        35 ~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~k  113 (275)
T PF00780_consen   35 LSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVK  113 (275)
T ss_pred             cceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEEC
Confidence            34599999999877777665 49999999987554332110          0011123344444  11233334444445


Q ss_pred             CeEEEEeCCCC-----ceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEeccee---------
Q 040370           87 GAIRLWDGVSA-----NCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATH---------  152 (228)
Q Consensus        87 g~v~iwd~~~~-----~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~---------  152 (228)
                      ..|.+|.....     +..+++..   ...+.+++|.  ++.++.|..+ ...+.|+.++.....+.....         
T Consensus       114 k~i~i~~~~~~~~~f~~~~ke~~l---p~~~~~i~~~--~~~i~v~~~~-~f~~idl~~~~~~~l~~~~~~~~~~~~~~~  187 (275)
T PF00780_consen  114 KKILIYEWNDPRNSFSKLLKEISL---PDPPSSIAFL--GNKICVGTSK-GFYLIDLNTGSPSELLDPSDSSSSFKSRNS  187 (275)
T ss_pred             CEEEEEEEECCcccccceeEEEEc---CCCcEEEEEe--CCEEEEEeCC-ceEEEecCCCCceEEeCccCCcchhhhccc
Confidence            68998887653     34455555   5678889888  5567777654 488899987655433321111         


Q ss_pred             eeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370          153 TQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEI  227 (228)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~  227 (228)
                      ......+.--+++.++++.   |..-.+.| ..|++.....-.=...+.++++  ...+|+..+.+ .|.||++.
T Consensus       188 ~~~~~~~~~~~~~e~Ll~~---~~~g~fv~-~~G~~~r~~~i~W~~~p~~~~~--~~pyli~~~~~-~iEV~~~~  255 (275)
T PF00780_consen  188 SSKPLGIFQLSDNEFLLCY---DNIGVFVN-KNGEPSRKSTIQWSSAPQSVAY--SSPYLIAFSSN-SIEVRSLE  255 (275)
T ss_pred             CCCceEEEEeCCceEEEEe---cceEEEEc-CCCCcCcccEEEcCCchhEEEE--ECCEEEEECCC-EEEEEECc
Confidence            1112223233445666542   23333334 3444333110112234555655  33477776654 49998863

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=97.11  E-value=0.076  Score=42.89  Aligned_cols=180  Identities=14%  Similarity=0.088  Sum_probs=92.3

Q ss_pred             CCCEEEEecCC------CeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecC------CeEEEEeCCCC
Q 040370           30 SGDFLLAGTDH------PIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKD------GAIRLWDGVSA   97 (228)
Q Consensus        30 ~~~~l~~~~~d------~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d------g~v~iwd~~~~   97 (228)
                      .+..++.|+.+      ..+..+|..+++-......+.   ...-.+++.. ++...++|+.|      .++..||.++.
T Consensus       284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~---~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~  359 (571)
T KOG4441|consen  284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPS---PRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTN  359 (571)
T ss_pred             CCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCc---ccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCC
Confidence            45667777776      367888988875444333332   2223444444 45788888888      35788898877


Q ss_pred             ceeeEEecccccceeEEEEECCCCCEEEEeeCCCe-----EEEEEccCCeeEEEEecceeeeeeeEEEE-CCCCcEEEEe
Q 040370           98 NCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDST-----VKLWEVSSGRLVKQYLGATHTQLRFQAVF-NDTEEFVLSI  171 (228)
Q Consensus        98 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~-----i~~wd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  171 (228)
                      +-...-........ .+++ .-+|...+.|+.||.     +..||.++.+.-..-...  . ....... .-++...+++
T Consensus       360 ~W~~~a~M~~~R~~-~~v~-~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~--~-~r~~~gv~~~~g~iYi~G  434 (571)
T KOG4441|consen  360 QWTPVAPMNTKRSD-FGVA-VLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPML--T-RRSGHGVAVLGGKLYIIG  434 (571)
T ss_pred             ceeccCCccCcccc-ceeE-EECCEEEEEeccccccccccEEEecCCCCcccccCCCC--c-ceeeeEEEEECCEEEEEc
Confidence            64332221110111 1111 116888899998864     778888775543222111  1 1111111 1234444444


Q ss_pred             eCCC-----CeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCC
Q 040370          172 DEPS-----NEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDR  219 (228)
Q Consensus       172 ~~~d-----~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg  219 (228)
                      |...     ..+..||..+..-...-.-.....-..++ .-++.+.+.||.|+
T Consensus       435 G~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a-~~~~~iYvvGG~~~  486 (571)
T KOG4441|consen  435 GGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVA-VLNGKIYVVGGFDG  486 (571)
T ss_pred             CcCCCccccceEEEEcCCCCceeecCCcccccccceEE-EECCEEEEECCccC
Confidence            3211     35778888766533221100000011122 12677777888776

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=97.10  E-value=0.085  Score=41.75  Aligned_cols=153  Identities=9%  Similarity=0.086  Sum_probs=86.4

Q ss_pred             CcceEEEEEeCCCCEEE-Eec--CCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCC----CCeEEEEecCCeEEE
Q 040370           19 THNVRSVSFHPSGDFLL-AGT--DHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSST----GGMYVTASKDGAIRL   91 (228)
Q Consensus        19 ~~~v~~~~~~~~~~~l~-~~~--~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~l~~~~~dg~v~i   91 (228)
                      -.++..++|. ||+.++ +.-  .+|.++.=|-.   .+..        -..|..+.|.|-    ...+++......|.|
T Consensus        19 iHPvhGlaWT-DGkqVvLT~L~l~~gE~kfGds~---viGq--------FEhV~GlsW~P~~~~~~paLLAVQHkkhVtV   86 (671)
T PF15390_consen   19 IHPVHGLAWT-DGKQVVLTDLQLHNGEPKFGDSK---VIGQ--------FEHVHGLSWAPPCTADTPALLAVQHKKHVTV   86 (671)
T ss_pred             hccccceEec-CCCEEEEEeeeeeCCccccCCcc---Eeec--------cceeeeeeecCcccCCCCceEEEeccceEEE
Confidence            3578899997 665554 321  22332221111   1110        245888999984    224555666789999


Q ss_pred             EeCCC-----CceeeEEeccc-c--cceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECC
Q 040370           92 WDGVS-----ANCVRSIVGAH-G--TAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFND  163 (228)
Q Consensus        92 wd~~~-----~~~~~~~~~~~-~--~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (228)
                      |.+..     ++.+.....+. .  ..--..+.|+|....|+.-.....-.+++++......+... .....+.+.+|.+
T Consensus        87 WqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi-~~~G~IhCACWT~  165 (671)
T PF15390_consen   87 WQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADI-KTSGLIHCACWTK  165 (671)
T ss_pred             EEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEec-cCCceEEEEEecC
Confidence            98752     22221111110 0  11224578999888777665554445666654332222211 2566788999999


Q ss_pred             CCcEEEEeeCCCCeEEEEEcC
Q 040370          164 TEEFVLSIDEPSNEIVIWDAL  184 (228)
Q Consensus       164 ~~~~~~~~~~~d~~i~i~d~~  184 (228)
                      +|..++++-+..=.-++||-.
T Consensus       166 DG~RLVVAvGSsLHSyiWd~~  186 (671)
T PF15390_consen  166 DGQRLVVAVGSSLHSYIWDSA  186 (671)
T ss_pred             cCCEEEEEeCCeEEEEEecCc
Confidence            998777665534667888853

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.10  E-value=0.058  Score=38.88  Aligned_cols=159  Identities=11%  Similarity=0.126  Sum_probs=104.1

Q ss_pred             ccceeeEEeCCCCCeEEEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeE
Q 040370           65 NGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLV  144 (228)
Q Consensus        65 ~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~  144 (228)
                      ...+.++.|+|+.+.|++......-.++=..+|+.++++.... -...-.+.+..++++.++--.++.+.++.+......
T Consensus        85 ~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g-~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~  163 (316)
T COG3204          85 TANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTG-FSDPETIEYIGGNQFVIVDERDRALYLFTVDADTTV  163 (316)
T ss_pred             cccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccc-cCChhHeEEecCCEEEEEehhcceEEEEEEcCCccE
Confidence            4559999999999988888888887777667899888886643 233456777878888888888899988877654322


Q ss_pred             EEEe-------ccee-eeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEe--ecCC-------CCCcEEEEeCC
Q 040370          145 KQYL-------GATH-TQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKW--SSNH-------IGAPRWIEHSP  207 (228)
Q Consensus       145 ~~~~-------~~~~-~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~--~~~~-------~~~v~~~~~~~  207 (228)
                      ....       ...+ ....-.++|.|....++.+-.. .-+.||....+......  ...+       -..|.++.|++
T Consensus       164 ~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr-~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~  242 (316)
T COG3204         164 ISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKER-NPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNA  242 (316)
T ss_pred             EeccceEEeccccCCCCcCceeeecCCCCceEEEEEcc-CCcEEEEEecCCcccccccccCcccccceEeeccccceecC
Confidence            2111       1111 3445678899998888887664 66777766533311111  0111       23467788887


Q ss_pred             -CCcEEEEecCCCCEEEee
Q 040370          208 -AEAAFITCGTDRSVRFWK  225 (228)
Q Consensus       208 -~~~~l~s~~~dg~i~vwd  225 (228)
                       .+.+|+-+.+++.+.-.|
T Consensus       243 ~~~~LLVLS~ESr~l~Evd  261 (316)
T COG3204         243 ITNSLLVLSDESRRLLEVD  261 (316)
T ss_pred             CCCcEEEEecCCceEEEEe
Confidence             556667666766655443

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=97.09  E-value=0.058  Score=38.74  Aligned_cols=153  Identities=12%  Similarity=0.067  Sum_probs=93.2

Q ss_pred             ceEEEEEeCCCCEEEEec---CCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEe-CCC
Q 040370           21 NVRSVSFHPSGDFLLAGT---DHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWD-GVS   96 (228)
Q Consensus        21 ~v~~~~~~~~~~~l~~~~---~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd-~~~   96 (228)
                      .+.+.+++++++.+|...   ....+.++...  ........     ...+..-.|++++...+....+...+++. ..+
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~~~-----g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~   97 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG--GPVRPVLT-----GGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSAS   97 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCC--Ccceeecc-----CCccccccccCCCCEEEEEcCCCceEEEEecCC
Confidence            789999999999887655   33445554433  32222211     44678889999988777766666667663 333


Q ss_pred             Ccee-eEEecccccceeEEEEECCCCCEEEEee---CCCeEEEEEccCCe-e-EEEEe-----cceeeeeeeEEEECCCC
Q 040370           97 ANCV-RSIVGAHGTAEATSANFTKDQRFVLSCG---KDSTVKLWEVSSGR-L-VKQYL-----GATHTQLRFQAVFNDTE  165 (228)
Q Consensus        97 ~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~---~d~~i~~wd~~~~~-~-~~~~~-----~~~~~~~~~~~~~~~~~  165 (228)
                      ++.. ...........|..+.++|||..++...   .++.|.+--+.... - ...+.     .......+..+.|.+++
T Consensus        98 g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~  177 (253)
T PF10647_consen   98 GTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDS  177 (253)
T ss_pred             CcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCC
Confidence            3322 2222221122899999999999877665   35677776553211 0 11111     11123467789999999


Q ss_pred             cEEEEeeCCCCeEEE
Q 040370          166 EFVLSIDEPSNEIVI  180 (228)
Q Consensus       166 ~~~~~~~~~d~~i~i  180 (228)
                      ..++.+...+..+..
T Consensus       178 ~L~V~~~~~~~~~~~  192 (253)
T PF10647_consen  178 TLVVLGRSAGGPVVR  192 (253)
T ss_pred             EEEEEeCCCCCceeE
Confidence            988888776665554

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=97.05  E-value=0.029  Score=43.03  Aligned_cols=85  Identities=18%  Similarity=0.269  Sum_probs=59.6

Q ss_pred             cceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCC----------------CcEEEEee
Q 040370          109 TAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDT----------------EEFVLSID  172 (228)
Q Consensus       109 ~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~  172 (228)
                      ...+.+++.+|++++.++...=|.|.++|+.++..++.+++-............+.                ..+++.-.
T Consensus       307 ~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIya  386 (415)
T PF14655_consen  307 KREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYA  386 (415)
T ss_pred             CceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEe
Confidence            45688999999999988888889999999999888877766432222211111111                22444444


Q ss_pred             CCCCeEEEEEcCCcceeEEee
Q 040370          173 EPSNEIVIWDALTAEKVAKWS  193 (228)
Q Consensus       173 ~~d~~i~i~d~~~~~~~~~~~  193 (228)
                      -.-|.|.||.+++|..+..+.
T Consensus       387 prRg~lEvW~~~~g~Rv~a~~  407 (415)
T PF14655_consen  387 PRRGILEVWSMRQGPRVAAFN  407 (415)
T ss_pred             ccCCeEEEEecCCCCEEEEEE
Confidence            556999999999998887763

>PHA03098 kelch-like protein; Provisional

Probab=97.04  E-value=0.038  Score=44.34  Aligned_cols=150  Identities=9%  Similarity=0.006  Sum_probs=70.7

Q ss_pred             CCCEEEEecCC-----CeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecC------CeEEEEeCCCCc
Q 040370           30 SGDFLLAGTDH-----PIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKD------GAIRLWDGVSAN   98 (228)
Q Consensus        30 ~~~~l~~~~~d-----~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d------g~v~iwd~~~~~   98 (228)
                      ++..++.|+.+     ..+..||..+.+-......+..  .... +++. -+++..+.|+.+      ..+..||+.+.+
T Consensus       342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~--r~~~-~~~~-~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~  417 (534)
T PHA03098        342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFP--RYNP-CVVN-VNNLIYVIGGISKNDELLKTVECFSLNTNK  417 (534)
T ss_pred             CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcC--Cccc-eEEE-ECCEEEEECCcCCCCcccceEEEEeCCCCe
Confidence            56667777754     3567788776653322222211  1111 1222 256666667632      458889987765


Q ss_pred             eeeEEecccccceeEEEEECCCCCEEEEeeCC--------CeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEE
Q 040370           99 CVRSIVGAHGTAEATSANFTKDQRFVLSCGKD--------STVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLS  170 (228)
Q Consensus        99 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d--------~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (228)
                      ....-.... ...-.++. ..++..++.|+.+        ..+.+||..+.+....-...........+..  ++...+.
T Consensus       418 W~~~~~~p~-~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~  493 (534)
T PHA03098        418 WSKGSPLPI-SHYGGCAI-YHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF--NNKIYVV  493 (534)
T ss_pred             eeecCCCCc-cccCceEE-EECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEE--CCEEEEE
Confidence            332211111 11111222 2245666666643        2388899887654332111101111111222  4444444


Q ss_pred             eeCC----CCeEEEEEcCCcc
Q 040370          171 IDEP----SNEIVIWDALTAE  187 (228)
Q Consensus       171 ~~~~----d~~i~i~d~~~~~  187 (228)
                      +|..    ...+.+||..+.+
T Consensus       494 GG~~~~~~~~~v~~yd~~~~~  514 (534)
T PHA03098        494 GGDKYEYYINEIEVYDDKTNT  514 (534)
T ss_pred             cCCcCCcccceeEEEeCCCCE
Confidence            4432    2468888876553

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=97.02  E-value=0.12  Score=41.36  Aligned_cols=156  Identities=12%  Similarity=0.139  Sum_probs=93.9

Q ss_pred             CCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCC--CCCeEEEEe------cCCeEEEEeCCCCceeeE
Q 040370           31 GDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSS--TGGMYVTAS------KDGAIRLWDGVSANCVRS  102 (228)
Q Consensus        31 ~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~------~dg~v~iwd~~~~~~~~~  102 (228)
                      +..++.++.|+.+.-.|.++|+.+.............+.   -+|  .+..++.+.      .+|.|.-+|.++|+.+-.
T Consensus       120 ~~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~t---ssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~  196 (527)
T TIGR03075       120 DGKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTIT---AAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWR  196 (527)
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEEeeccccccccccccc---CCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEe
Confidence            356777888999999999999987766542111001111   122  123455543      268999999999987765


Q ss_pred             Eecccc-----------------------------ccee-EEEEECCCCCEEEEeeCC-----C-----------eEEEE
Q 040370          103 IVGAHG-----------------------------TAEA-TSANFTKDQRFVLSCGKD-----S-----------TVKLW  136 (228)
Q Consensus       103 ~~~~~~-----------------------------~~~i-~~~~~~~~~~~l~~~~~d-----~-----------~i~~w  136 (228)
                      +.....                             ...+ ..+++.|...+++.+..+     +           .|.-.
T Consensus       197 ~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAl  276 (527)
T TIGR03075       197 RYTVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVAR  276 (527)
T ss_pred             ccCcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEE
Confidence            433210                             1111 134666766666655421     2           57778


Q ss_pred             EccCCeeEEEEecceeeee-------eeEEEECCCCc--EEEEeeCCCCeEEEEEcCCccee
Q 040370          137 EVSSGRLVKQYLGATHTQL-------RFQAVFNDTEE--FVLSIDEPSNEIVIWDALTAEKV  189 (228)
Q Consensus       137 d~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~--~~~~~~~~d~~i~i~d~~~~~~~  189 (228)
                      |+++|+..-.++...|...       ...+....+++  -+++.+..+|.+++.|.++|+.+
T Consensus       277 d~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i  338 (527)
T TIGR03075       277 DPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL  338 (527)
T ss_pred             ccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence            8999998877765433221       12222223554  45656667899999999999875

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=97.01  E-value=0.071  Score=38.48  Aligned_cols=134  Identities=16%  Similarity=0.165  Sum_probs=76.5

Q ss_pred             CcCCccccceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEE
Q 040370            2 FDFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYV   81 (228)
Q Consensus         2 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~   81 (228)
                      .|++.+..+.......-.+--.++..  .|++..++..|.-..+.|+.+............. ...-..++.|  |++-.
T Consensus       111 vDIS~P~sP~~~~~lnt~gyaygv~v--sGn~aYVadlddgfLivdvsdpssP~lagrya~~-~~d~~~v~IS--Gn~AY  185 (370)
T COG5276         111 VDISTPDSPTLIGFLNTDGYAYGVYV--SGNYAYVADLDDGFLIVDVSDPSSPQLAGRYALP-GGDTHDVAIS--GNYAY  185 (370)
T ss_pred             EeccCCCCcceeccccCCceEEEEEe--cCCEEEEeeccCcEEEEECCCCCCceeeeeeccC-CCCceeEEEe--cCeEE
Confidence            46666665555554444444555555  5788887774444568888765422111111111 2333556665  77778


Q ss_pred             EEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCe
Q 040370           82 TASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGR  142 (228)
Q Consensus        82 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~  142 (228)
                      .+..|+-+.+-|+.+......+........+.++..+++..+++..  +.-+.+-|..+.+
T Consensus       186 vA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy--~egvlivd~s~~s  244 (370)
T COG5276         186 VAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVY--DEGVLIVDVSGPS  244 (370)
T ss_pred             EEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEc--ccceEEEecCCCC
Confidence            8888999999999876544333322213367777777665555544  3336666665444

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=96.97  E-value=0.062  Score=41.82  Aligned_cols=144  Identities=10%  Similarity=0.123  Sum_probs=84.3

Q ss_pred             CCCEEE-EecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCC-------eEEEEecCCeEEEEeCCCCc-ee
Q 040370           30 SGDFLL-AGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGG-------MYVTASKDGAIRLWDGVSAN-CV  100 (228)
Q Consensus        30 ~~~~l~-~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-------~l~~~~~dg~v~iwd~~~~~-~~  100 (228)
                      +.++|+ .|.....++-.|++.|+.+.....     ...+ -+.|.|..+       .-+.|-.+..|.--|.+-.. .+
T Consensus       478 dssli~~dg~~~~kLykmDIErGkvveeW~~-----~ddv-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi  551 (776)
T COG5167         478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDL-----KDDV-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKI  551 (776)
T ss_pred             CcceEEecCCCcccceeeecccceeeeEeec-----CCcc-eeecCCchhHHhcCccceEEeecccceEEecccccCCce
Confidence            444444 455556677778888887665554     2333 567777532       23345455556556766432 22


Q ss_pred             eEE--ecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCCeE
Q 040370          101 RSI--VGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEI  178 (228)
Q Consensus       101 ~~~--~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i  178 (228)
                      ...  +.........+.. .-.+.+++.++..|-|++||--.-+....+.+  -...+..+....+|.++++++.  ..+
T Consensus       552 ~v~esKdY~tKn~Fss~~-tTesGyIa~as~kGDirLyDRig~rAKtalP~--lG~aIk~idvta~Gk~ilaTCk--~yl  626 (776)
T COG5167         552 KVVESKDYKTKNKFSSGM-TTESGYIAAASRKGDIRLYDRIGKRAKTALPG--LGDAIKHIDVTANGKHILATCK--NYL  626 (776)
T ss_pred             eeeeehhccccccccccc-cccCceEEEecCCCceeeehhhcchhhhcCcc--cccceeeeEeecCCcEEEEeec--ceE
Confidence            221  1111122222222 22456899999999999999533222222222  4566777888899999999886  788


Q ss_pred             EEEEcC
Q 040370          179 VIWDAL  184 (228)
Q Consensus       179 ~i~d~~  184 (228)
                      .+-|++
T Consensus       627 lL~d~~  632 (776)
T COG5167         627 LLTDVP  632 (776)
T ss_pred             EEEecc
Confidence            888764

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=96.92  E-value=0.12  Score=39.45  Aligned_cols=146  Identities=14%  Similarity=0.108  Sum_probs=76.8

Q ss_pred             cceEEEEEeCCCCEEEEec-----------CCC-eEEEEEcccc--eEEeeeccceeeeccceeeEEeCCCCCeEEEEec
Q 040370           20 HNVRSVSFHPSGDFLLAGT-----------DHP-IAHLYDVNTF--QCYLSANVPEISVNGAINQVRYSSTGGMYVTASK   85 (228)
Q Consensus        20 ~~v~~~~~~~~~~~l~~~~-----------~d~-~i~vw~~~~~--~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~   85 (228)
                      .....|+|.++|+.+++-.           ..+ .|.+++-.++  +..... ..... ....+.+++.+++ +++ ++.
T Consensus        14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~-vfa~~-l~~p~Gi~~~~~G-lyV-~~~   89 (367)
T TIGR02604        14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSN-VFAEE-LSMVTGLAVAVGG-VYV-ATP   89 (367)
T ss_pred             CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeE-EeecC-CCCccceeEecCC-EEE-eCC
Confidence            5677899999999877643           223 6777765432  211111 11111 2345789998888 444 444


Q ss_pred             CCeEEEEeCCCC-----ceeeE---Eecc--cccceeEEEEECCCCCEEEEeeCC-------------------CeEEEE
Q 040370           86 DGAIRLWDGVSA-----NCVRS---IVGA--HGTAEATSANFTKDQRFVLSCGKD-------------------STVKLW  136 (228)
Q Consensus        86 dg~v~iwd~~~~-----~~~~~---~~~~--~~~~~i~~~~~~~~~~~l~~~~~d-------------------~~i~~w  136 (228)
                      ....++.|....     +....   +...  +.......+.|.|||.+.++-+..                   +.|.-+
T Consensus        90 ~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~  169 (367)
T TIGR02604        90 PDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRY  169 (367)
T ss_pred             CeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEE
Confidence            444444454321     11111   2111  012346789999999876654421                   345555


Q ss_pred             EccCCeeEEEEecceeeeeeeEEEECCCCcEEEEee
Q 040370          137 EVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSID  172 (228)
Q Consensus       137 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (228)
                      |...++. ..+..  .......++|++++..+++-.
T Consensus       170 ~pdg~~~-e~~a~--G~rnp~Gl~~d~~G~l~~tdn  202 (367)
T TIGR02604       170 NPDGGKL-RVVAH--GFQNPYGHSVDSWGDVFFCDN  202 (367)
T ss_pred             ecCCCeE-EEEec--CcCCCccceECCCCCEEEEcc
Confidence            6554432 22211  223345688889887766533

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.91  E-value=0.011  Score=49.95  Aligned_cols=118  Identities=7%  Similarity=-0.007  Sum_probs=78.1

Q ss_pred             cceeEEEEECCCCCEEE--EeeCCCeEEEEEccCCeeEE-----EEe----cceeeeeeeEEEECCCCcEEEEeeCCCCe
Q 040370          109 TAEATSANFTKDQRFVL--SCGKDSTVKLWEVSSGRLVK-----QYL----GATHTQLRFQAVFNDTEEFVLSIDEPSNE  177 (228)
Q Consensus       109 ~~~i~~~~~~~~~~~l~--~~~~d~~i~~wd~~~~~~~~-----~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  177 (228)
                      ..++..+...+|+...+  ..+.+-.|..||+++-..-.     -+.    .........++.|+|.-....+....|+.
T Consensus       100 ~~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dls  179 (1405)
T KOG3630|consen  100 EIPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLS  179 (1405)
T ss_pred             cccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccc
Confidence            45666677777765443  33344579999998632211     011    11134455677888877766666667899


Q ss_pred             EEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370          178 IVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEI  227 (228)
Q Consensus       178 i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~  227 (228)
                      |++..+........- ..-....++++|+|.|+.++.|-..|++.-|...
T Consensus       180 l~V~~~~~~~~~v~s-~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~  228 (1405)
T KOG3630|consen  180 LRVKSTKQLAQNVTS-FPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS  228 (1405)
T ss_pred             hhhhhhhhhhhhhcc-cCcccceeeEEeccccceeeEecCCCeEEEeecc
Confidence            998877544333322 2445678999999999999999999999877643

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=96.73  E-value=0.14  Score=37.69  Aligned_cols=187  Identities=12%  Similarity=0.118  Sum_probs=88.5

Q ss_pred             ceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCCCcee
Q 040370           21 NVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANCV  100 (228)
Q Consensus        21 ~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~  100 (228)
                      ...++.|.. .+.+++| ..+. .+...+.++.-........- .+....+....++...+ .+..|.|..= .+.++.-
T Consensus        63 ~l~~I~f~~-~~g~ivG-~~g~-ll~T~DgG~tW~~v~l~~~l-pgs~~~i~~l~~~~~~l-~~~~G~iy~T-~DgG~tW  136 (302)
T PF14870_consen   63 HLNSISFDG-NEGWIVG-EPGL-LLHTTDGGKTWERVPLSSKL-PGSPFGITALGDGSAEL-AGDRGAIYRT-TDGGKTW  136 (302)
T ss_dssp             EEEEEEEET-TEEEEEE-ETTE-EEEESSTTSS-EE----TT--SS-EEEEEEEETTEEEE-EETT--EEEE-SSTTSSE
T ss_pred             eEEEEEecC-CceEEEc-CCce-EEEecCCCCCcEEeecCCCC-CCCeeEEEEcCCCcEEE-EcCCCcEEEe-CCCCCCe
Confidence            366777764 3344444 4453 35555555544333221100 22233343333443333 3445554432 2344444


Q ss_pred             eEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCCeEEE
Q 040370          101 RSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVI  180 (228)
Q Consensus       101 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i  180 (228)
                      +.+... ....+..+..++++.+++++.......-||.........-..  ....+..+.|.|++...+++.  .|.|++
T Consensus       137 ~~~~~~-~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~--~~~riq~~gf~~~~~lw~~~~--Gg~~~~  211 (302)
T PF14870_consen  137 QAVVSE-TSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRN--SSRRIQSMGFSPDGNLWMLAR--GGQIQF  211 (302)
T ss_dssp             EEEE-S-----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE----SSS-EEEEEE-TTS-EEEEET--TTEEEE
T ss_pred             eEcccC-CcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccC--ccceehhceecCCCCEEEEeC--CcEEEE
Confidence            443332 256788888999999998887777677888643222222111  456788899999988877653  488887


Q ss_pred             EE-cCCcceeEE--eec-CCCCCcEEEEeCCCCcEEEEecCC
Q 040370          181 WD-ALTAEKVAK--WSS-NHIGAPRWIEHSPAEAAFITCGTD  218 (228)
Q Consensus       181 ~d-~~~~~~~~~--~~~-~~~~~v~~~~~~~~~~~l~s~~~d  218 (228)
                      =+ ....+....  ... ...-.+..++|.+++...++|+..
T Consensus       212 s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G  253 (302)
T PF14870_consen  212 SDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSG  253 (302)
T ss_dssp             EE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEESTT
T ss_pred             ccCCCCccccccccCCcccCceeeEEEEecCCCCEEEEeCCc
Confidence            76 222222221  101 122347889999988877766643

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=96.73  E-value=0.013  Score=28.85  Aligned_cols=31  Identities=23%  Similarity=0.388  Sum_probs=25.5

Q ss_pred             cceeeEEeCCCC---CeEEEEecCCeEEEEeCCC
Q 040370           66 GAINQVRYSSTG---GMYVTASKDGAIRLWDGVS   96 (228)
Q Consensus        66 ~~i~~~~~~~~~---~~l~~~~~dg~v~iwd~~~   96 (228)
                      +.|.+++|+|+.   .+|+.+-.-|.|.|+|+++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            468999999853   4788777789999999985

It contains a characteristic DLL sequence motif.

>PHA02790 Kelch-like protein; Provisional

Probab=96.66  E-value=0.24  Score=39.34  Aligned_cols=183  Identities=8%  Similarity=-0.048  Sum_probs=87.1

Q ss_pred             CCCEEEEecCCC-----eEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecC--CeEEEEeCCCCceeeE
Q 040370           30 SGDFLLAGTDHP-----IAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKD--GAIRLWDGVSANCVRS  102 (228)
Q Consensus        30 ~~~~l~~~~~d~-----~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d--g~v~iwd~~~~~~~~~  102 (228)
                      ++..+++|+.++     .+..||..+++-......+..  ......+.  -++...+.|+.+  ..+..||..+++....
T Consensus       271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~--r~~~~~v~--~~~~iYviGG~~~~~sve~ydp~~n~W~~~  346 (480)
T PHA02790        271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSP--RLYASGVP--ANNKLYVVGGLPNPTSVERWFHGDAAWVNM  346 (480)
T ss_pred             CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCch--hhcceEEE--ECCEEEEECCcCCCCceEEEECCCCeEEEC
Confidence            455667777543     566788877654333322211  11122222  256777777754  3578888766543222


Q ss_pred             EecccccceeEEEEECCCCCEEEEeeCCC---eEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCCeEE
Q 040370          103 IVGAHGTAEATSANFTKDQRFVLSCGKDS---TVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIV  179 (228)
Q Consensus       103 ~~~~~~~~~i~~~~~~~~~~~l~~~~~d~---~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~  179 (228)
                      -......... +++ .-+++..+.|+.++   .+..||.++.+....-........ ..++ .- +..+.+.|   |.+.
T Consensus       347 ~~l~~~r~~~-~~~-~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~-~~~~-~~-~~~IYv~G---G~~e  418 (480)
T PHA02790        347 PSLLKPRCNP-AVA-SINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYK-SCAL-VF-GRRLFLVG---RNAE  418 (480)
T ss_pred             CCCCCCCccc-EEE-EECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCcccc-ceEE-EE-CCEEEEEC---CceE
Confidence            1111101111 121 22577777777553   477888877654332111101111 1111 12 33444444   3467


Q ss_pred             EEEcCCcceeEEeecCC-CCCcEEEEeCCCCcEEEEecCC-----CCEEEeee
Q 040370          180 IWDALTAEKVAKWSSNH-IGAPRWIEHSPAEAAFITCGTD-----RSVRFWKE  226 (228)
Q Consensus       180 i~d~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~s~~~d-----g~i~vwd~  226 (228)
                      +||.++.+-...-...+ ......+.  -+++..+.||.+     ..+..||.
T Consensus       419 ~ydp~~~~W~~~~~m~~~r~~~~~~v--~~~~IYviGG~~~~~~~~~ve~Yd~  469 (480)
T PHA02790        419 FYCESSNTWTLIDDPIYPRDNPELII--VDNKLLLIGGFYRGSYIDTIEVYNN  469 (480)
T ss_pred             EecCCCCcEeEcCCCCCCccccEEEE--ECCEEEEECCcCCCcccceEEEEEC
Confidence            88887654322211111 11222222  267788888764     34667775

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=96.65  E-value=0.33  Score=40.95  Aligned_cols=196  Identities=13%  Similarity=0.081  Sum_probs=100.1

Q ss_pred             cCcceEEEEEeCC--C----CEEEEecCCCeEEEEEc-ccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEE
Q 040370           18 DTHNVRSVSFHPS--G----DFLLAGTDHPIAHLYDV-NTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIR   90 (228)
Q Consensus        18 ~~~~v~~~~~~~~--~----~~l~~~~~d~~i~vw~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~   90 (228)
                      -...|.|++++|-  +    ++++.|..+..+.+.-. .+.................|.-..+-.+..+|.++..||.+.
T Consensus       529 ~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~  608 (1096)
T KOG1897|consen  529 FEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALL  608 (1096)
T ss_pred             ecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEE
Confidence            3578999999983  2    26788887766655443 333332222222111133455555655678999999999988


Q ss_pred             EEeCC--CCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEE
Q 040370           91 LWDGV--SANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFV  168 (228)
Q Consensus        91 iwd~~--~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (228)
                      .+-+.  ++.....-+.+-+..++.--.|+..++.-+-+..|+-..+|.-+ ++....-..-.....+....-+.....+
T Consensus       609 ~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n-~kLv~spls~kev~~~c~f~s~a~~d~l  687 (1096)
T KOG1897|consen  609 YFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSN-GKLVYSPLSLKEVNHMCPFNSDAYPDSL  687 (1096)
T ss_pred             EEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecC-CcEEEeccchHHhhhhcccccccCCceE
Confidence            77554  44332222222224566666666655544444456666666643 4443332111111111111111223344


Q ss_pred             EEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEec
Q 040370          169 LSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCG  216 (228)
Q Consensus       169 ~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~  216 (228)
                      +.+..  +.+.+.-+..-+.+......-...+..+++.+....+++.+
T Consensus       688 ~~~~~--~~l~i~tid~iqkl~irtvpl~~~prrI~~q~~sl~~~v~s  733 (1096)
T KOG1897|consen  688 ASANG--GALTIGTIDEIQKLHIRTVPLGESPRRICYQESSLTFGVLS  733 (1096)
T ss_pred             EEecC--CceEEEEecchhhcceeeecCCCChhheEecccceEEEEEe
Confidence            44333  77777766544333222123345567777777555555443

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=96.64  E-value=0.15  Score=36.70  Aligned_cols=149  Identities=9%  Similarity=0.002  Sum_probs=89.6

Q ss_pred             cceeeEEeCCCCCeEEEEe---cCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEE-ccCC
Q 040370           66 GAINQVRYSSTGGMYVTAS---KDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWE-VSSG  141 (228)
Q Consensus        66 ~~i~~~~~~~~~~~l~~~~---~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd-~~~~  141 (228)
                      ..+.+.+++++++.++...   ....+.++..  +........   ...+..-.|++++...+....+...+++. ..++
T Consensus        24 ~~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~--~~~~~~~~~---g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g   98 (253)
T PF10647_consen   24 YDVTSPAVSPDGSRVAAVSEGDGGRSLYVGPA--GGPVRPVLT---GGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASG   98 (253)
T ss_pred             ccccceEECCCCCeEEEEEEcCCCCEEEEEcC--CCcceeecc---CCccccccccCCCCEEEEEcCCCceEEEEecCCC
Confidence            3688999999998776655   3344555543  333333322   34778889999977766666666666663 3333


Q ss_pred             eeEE-EEecceeeeeeeEEEECCCCcEEEEeeC--CCCeEEEEEcC---Cc--ce---eEEeecCCCCCcEEEEeCCCCc
Q 040370          142 RLVK-QYLGATHTQLRFQAVFNDTEEFVLSIDE--PSNEIVIWDAL---TA--EK---VAKWSSNHIGAPRWIEHSPAEA  210 (228)
Q Consensus       142 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~d~~i~i~d~~---~~--~~---~~~~~~~~~~~v~~~~~~~~~~  210 (228)
                      +... ..........+..+.++|+|..++....  .++.|.+--+.   .+  ..   ...........+..+.|.+++.
T Consensus        99 ~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~  178 (253)
T PF10647_consen   99 TGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDST  178 (253)
T ss_pred             cceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCE
Confidence            3222 2221111127889999999998877652  24667666443   22  01   1111123356889999999998


Q ss_pred             EEEEecCCC
Q 040370          211 AFITCGTDR  219 (228)
Q Consensus       211 ~l~s~~~dg  219 (228)
                      +++.+...+
T Consensus       179 L~V~~~~~~  187 (253)
T PF10647_consen  179 LVVLGRSAG  187 (253)
T ss_pred             EEEEeCCCC
Confidence            877766544

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=96.56  E-value=0.23  Score=37.92  Aligned_cols=147  Identities=9%  Similarity=0.070  Sum_probs=79.4

Q ss_pred             cceeeEEeCCCCCeEEEEe-----------cCC-eEEEEeCCC--Cce--eeEEecccccceeEEEEECCCCCEEEEeeC
Q 040370           66 GAINQVRYSSTGGMYVTAS-----------KDG-AIRLWDGVS--ANC--VRSIVGAHGTAEATSANFTKDQRFVLSCGK  129 (228)
Q Consensus        66 ~~i~~~~~~~~~~~l~~~~-----------~dg-~v~iwd~~~--~~~--~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  129 (228)
                      .....|+|.++|+++++-.           ..+ .|.+++-.+  ++.  ...+...  -.....+++.+++  |+.+..
T Consensus        14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~--l~~p~Gi~~~~~G--lyV~~~   89 (367)
T TIGR02604        14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEE--LSMVTGLAVAVGG--VYVATP   89 (367)
T ss_pred             CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecC--CCCccceeEecCC--EEEeCC
Confidence            3457789999998776642           223 677775433  222  2233221  3345788898888  444444


Q ss_pred             CCeEEEEEccCC-----ee--EE-EEecce--eeeeeeEEEECCCCcEEEEeeCC------------------CCeEEEE
Q 040370          130 DSTVKLWEVSSG-----RL--VK-QYLGAT--HTQLRFQAVFNDTEEFVLSIDEP------------------SNEIVIW  181 (228)
Q Consensus       130 d~~i~~wd~~~~-----~~--~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~------------------d~~i~i~  181 (228)
                      ....++.|....     +.  +. .+....  +......+.+.|++...++.+..                  .+.|.-+
T Consensus        90 ~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~  169 (367)
T TIGR02604        90 PDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRY  169 (367)
T ss_pred             CeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEE
Confidence            443334454321     11  11 121110  12335678889998877765531                  1445556


Q ss_pred             EcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCC
Q 040370          182 DALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTD  218 (228)
Q Consensus       182 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d  218 (228)
                      +...++. ..+..+ ......++|+|+|+++++-..+
T Consensus       170 ~pdg~~~-e~~a~G-~rnp~Gl~~d~~G~l~~tdn~~  204 (367)
T TIGR02604       170 NPDGGKL-RVVAHG-FQNPYGHSVDSWGDVFFCDNDD  204 (367)
T ss_pred             ecCCCeE-EEEecC-cCCCccceECCCCCEEEEccCC
Confidence            6544432 233233 3446789999999887764433

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.56  E-value=0.087  Score=40.44  Aligned_cols=143  Identities=13%  Similarity=0.124  Sum_probs=86.6

Q ss_pred             eeEEeCCCCCeEEEEecCCeEEEEeCCCC--ceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeE--
Q 040370           69 NQVRYSSTGGMYVTASKDGAIRLWDGVSA--NCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLV--  144 (228)
Q Consensus        69 ~~~~~~~~~~~l~~~~~dg~v~iwd~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~--  144 (228)
                      +.+-|...++ .+.+-..|.+.-|-+...  .....+... ..++|.++.|++|.+.+|.--.+.+|.+++....+..  
T Consensus        26 ngvFfDDaNk-qlfavrSggatgvvvkgpndDVpiSfdm~-d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~  103 (657)
T KOG2377|consen   26 NGVFFDDANK-QLFAVRSGGATGVVVKGPNDDVPISFDMD-DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLE  103 (657)
T ss_pred             cceeeccCcc-eEEEEecCCeeEEEEeCCCCCCCceeeec-CCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhH
Confidence            3444543333 333334455555654432  223333332 2669999999999999999999999999987432221  


Q ss_pred             EEEecceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEec
Q 040370          145 KQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCG  216 (228)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~  216 (228)
                      ...+.......+...+|..+....+..   +..+.+|-....+...+....|.-.|+.-.|.++.+.++-++
T Consensus       104 ~~~~ck~k~~~IlGF~W~~s~e~A~i~---~~G~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t  172 (657)
T KOG2377|consen  104 YTQECKTKNANILGFCWTSSTEIAFIT---DQGIEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLST  172 (657)
T ss_pred             HHHHhccCcceeEEEEEecCeeEEEEe---cCCeEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeec
Confidence            122222234457778888775544443   345777776555444444467888899999999877544443

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=96.51  E-value=0.15  Score=35.69  Aligned_cols=95  Identities=14%  Similarity=0.127  Sum_probs=63.2

Q ss_pred             EEEEEeCCCCEEE-EecCCCeEEEEE--cccceEEe-----eeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeC
Q 040370           23 RSVSFHPSGDFLL-AGTDHPIAHLYD--VNTFQCYL-----SANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDG   94 (228)
Q Consensus        23 ~~~~~~~~~~~l~-~~~~d~~i~vw~--~~~~~~~~-----~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~   94 (228)
                      +.++|+.+.+.+. +-+.+-+|.-||  ..+|....     .++..........-.++...+|++.+++-..++|...|+
T Consensus       161 Ngl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp  240 (310)
T KOG4499|consen  161 NGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDP  240 (310)
T ss_pred             ccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECC
Confidence            4678887666655 456677777777  55554221     111100000112234555668888888888999999999


Q ss_pred             CCCceeeEEecccccceeEEEEECC
Q 040370           95 VSANCVRSIVGAHGTAEATSANFTK  119 (228)
Q Consensus        95 ~~~~~~~~~~~~~~~~~i~~~~~~~  119 (228)
                      .+|+.+.++...  ...+++++|--
T Consensus       241 ~tGK~L~eiklP--t~qitsccFgG  263 (310)
T KOG4499|consen  241 TTGKILLEIKLP--TPQITSCCFGG  263 (310)
T ss_pred             CCCcEEEEEEcC--CCceEEEEecC
Confidence            999999999887  67899999975

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=96.47  E-value=0.43  Score=40.04  Aligned_cols=162  Identities=14%  Similarity=0.088  Sum_probs=91.8

Q ss_pred             CCEEEEecCCCeEEEEEcccceEEeeecccee--------eeccceeeEEeCC--CCCeEEEEec----------CCeEE
Q 040370           31 GDFLLAGTDHPIAHLYDVNTFQCYLSANVPEI--------SVNGAINQVRYSS--TGGMYVTASK----------DGAIR   90 (228)
Q Consensus        31 ~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~--------~~~~~i~~~~~~~--~~~~l~~~~~----------dg~v~   90 (228)
                      +..++.++.|+.+.-.|.++|+....+.....        .....-..+.-.|  .+..++.|+.          +|.|+
T Consensus       260 ~~rV~~~T~Dg~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~  339 (764)
T TIGR03074       260 ARRIILPTSDARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIR  339 (764)
T ss_pred             CCEEEEecCCCeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEE
Confidence            45788888999999999999987765432100        0000000111122  2345666643          68899


Q ss_pred             EEeCCCCceeeEEeccc---------------cccee-EEEEECCCCCEEEEee------------------CCCeEEEE
Q 040370           91 LWDGVSANCVRSIVGAH---------------GTAEA-TSANFTKDQRFVLSCG------------------KDSTVKLW  136 (228)
Q Consensus        91 iwd~~~~~~~~~~~~~~---------------~~~~i-~~~~~~~~~~~l~~~~------------------~d~~i~~w  136 (228)
                      -+|.++|+.+-.+....               ....+ ..++++++...++.+.                  ..+.|.-.
T Consensus       340 A~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvAL  419 (764)
T TIGR03074       340 AFDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVAL  419 (764)
T ss_pred             EEECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEE
Confidence            99999999887664310               00111 2344555444444322                  23456777


Q ss_pred             EccCCeeEEEEecceeeee-------eeEEEECC-CCc--EEEEeeCCCCeEEEEEcCCcceeEEe
Q 040370          137 EVSSGRLVKQYLGATHTQL-------RFQAVFND-TEE--FVLSIDEPSNEIVIWDALTAEKVAKW  192 (228)
Q Consensus       137 d~~~~~~~~~~~~~~~~~~-------~~~~~~~~-~~~--~~~~~~~~d~~i~i~d~~~~~~~~~~  192 (228)
                      |.++|+..-.++...|...       ..-+.+.. +++  -++..+..+|.++++|.++|+.+...
T Consensus       420 D~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~  485 (764)
T TIGR03074       420 DATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPV  485 (764)
T ss_pred             eCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeec
Confidence            8888888777654222111       11122222 442  24445666899999999999887654

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=96.44  E-value=0.076  Score=40.82  Aligned_cols=83  Identities=16%  Similarity=0.230  Sum_probs=58.5

Q ss_pred             cceeeEEeCCCCCeEEEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCC-C----------------C-EEEEe
Q 040370           66 GAINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKD-Q----------------R-FVLSC  127 (228)
Q Consensus        66 ~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~-~----------------~-~l~~~  127 (228)
                      ..+.++..+|.+++.++...=|.|.++|+.++..++.+++.. ...+.-+..... .                . +++-+
T Consensus       308 R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYR-dAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIya  386 (415)
T PF14655_consen  308 REGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYR-DAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYA  386 (415)
T ss_pred             ceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCc-cceEEEEEeecccccccccccccCCCCcceEEEEEEe
Confidence            357889999999988888777999999999998888877643 222211111111 1                1 23456


Q ss_pred             eCCCeEEEEEccCCeeEEEEec
Q 040370          128 GKDSTVKLWEVSSGRLVKQYLG  149 (228)
Q Consensus       128 ~~d~~i~~wd~~~~~~~~~~~~  149 (228)
                      -.-|.|.||.++++..+..+..
T Consensus       387 prRg~lEvW~~~~g~Rv~a~~v  408 (415)
T PF14655_consen  387 PRRGILEVWSMRQGPRVAAFNV  408 (415)
T ss_pred             ccCCeEEEEecCCCCEEEEEEe
Confidence            6788999999999988877754

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=96.40  E-value=0.23  Score=36.20  Aligned_cols=204  Identities=12%  Similarity=0.182  Sum_probs=115.4

Q ss_pred             ceEEEEEeCCCCEEEEecCCCeEEEEEccc------ce-EEeeecccee-eeccceeeEEeCCCCC------------eE
Q 040370           21 NVRSVSFHPSGDFLLAGTDHPIAHLYDVNT------FQ-CYLSANVPEI-SVNGAINQVRYSSTGG------------MY   80 (228)
Q Consensus        21 ~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~------~~-~~~~~~~~~~-~~~~~i~~~~~~~~~~------------~l   80 (228)
                      .-..|+++|.+.+-++....+...+||...      .+ .+.....+.. ......+.+.|+....            .+
T Consensus        24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F  103 (336)
T TIGR03118        24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF  103 (336)
T ss_pred             ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence            456799999888878777788999999861      11 1222221111 1134567777774332            36


Q ss_pred             EEEecCCeEEEEeCCCCce-----eeEEecccccceeEEEEECC--CCCEEEEee-CCCeEEEEEccCCeeE--EEEecc
Q 040370           81 VTASKDGAIRLWDGVSANC-----VRSIVGAHGTAEATSANFTK--DQRFVLSCG-KDSTVKLWEVSSGRLV--KQYLGA  150 (228)
Q Consensus        81 ~~~~~dg~v~iwd~~~~~~-----~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~-~d~~i~~wd~~~~~~~--~~~~~~  150 (228)
                      +.+++||+|.-|...-...     ...+........-..+++..  .+.+|+.+. ..++|.++|-.-.+..  ..+...
T Consensus       104 if~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP  183 (336)
T TIGR03118       104 LFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDP  183 (336)
T ss_pred             EEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCC
Confidence            7889999999998543222     12221111122234455553  345555554 5688999985422211  001100


Q ss_pred             --------------eeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEee-cCCCCCcEEEEeCC------CC
Q 040370          151 --------------THTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWS-SNHIGAPRWIEHSP------AE  209 (228)
Q Consensus       151 --------------~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~v~~~~~~~------~~  209 (228)
                                    ...-.+.-..-.++...-+.+.+ -|.|.+||. .++.+.++. .+.-...+.++..|      .+
T Consensus       184 ~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G-~G~VdvFd~-~G~l~~r~as~g~LNaPWG~a~APa~FG~~sg  261 (336)
T TIGR03118       184 ALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAG-LGYVNVFTL-NGQLLRRVASSGRLNAPWGLAIAPESFGSLSG  261 (336)
T ss_pred             CCCCCCCCcceEEECCeEEEEEEecCCcccccccCCC-cceEEEEcC-CCcEEEEeccCCcccCCceeeeChhhhCCCCC
Confidence                          01122222333333333333333 489999996 577776662 34555677788766      56


Q ss_pred             cEEEEecCCCCEEEeee
Q 040370          210 AAFITCGTDRSVRFWKE  226 (228)
Q Consensus       210 ~~l~s~~~dg~i~vwd~  226 (228)
                      .+|+---.||+|..||.
T Consensus       262 ~lLVGNFGDG~InaFD~  278 (336)
T TIGR03118       262 ALLVGNFGDGTINAYDP  278 (336)
T ss_pred             CeEEeecCCceeEEecC
Confidence            77777668999999985

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>PRK13684 Ycf48-like protein; Provisional

Probab=96.37  E-value=0.28  Score=36.88  Aligned_cols=156  Identities=11%  Similarity=0.120  Sum_probs=84.2

Q ss_pred             CcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCCCc
Q 040370           19 THNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSAN   98 (228)
Q Consensus        19 ~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~   98 (228)
                      ...+.++.+.|++.+++++. .|.+..-.-..++.........   ...++++.+.++++.++.+ ..|.+++=..+.+.
T Consensus       172 ~g~~~~i~~~~~g~~v~~g~-~G~i~~s~~~gg~tW~~~~~~~---~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~  246 (334)
T PRK13684        172 AGVVRNLRRSPDGKYVAVSS-RGNFYSTWEPGQTAWTPHQRNS---SRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLE  246 (334)
T ss_pred             cceEEEEEECCCCeEEEEeC-CceEEEEcCCCCCeEEEeeCCC---cccceeeeEcCCCCEEEEe-cCCEEEEccCCCCC
Confidence            34678889988887766655 4544321112222222222211   5678999999998876665 56776543344444


Q ss_pred             eeeEEecc--cccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEec-ceeeeeeeEEEECCCCcEEEEeeCCC
Q 040370           99 CVRSIVGA--HGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLG-ATHTQLRFQAVFNDTEEFVLSIDEPS  175 (228)
Q Consensus        99 ~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~d  175 (228)
                      .-.....+  .....+.++.+.+++..++ ++.+|.+.. ....++.-..... .........+.+..++..+++ |. .
T Consensus       247 sW~~~~~~~~~~~~~l~~v~~~~~~~~~~-~G~~G~v~~-S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~-G~-~  322 (334)
T PRK13684        247 SWSKPIIPEITNGYGYLDLAYRTPGEIWA-GGGNGTLLV-SKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVL-GQ-R  322 (334)
T ss_pred             ccccccCCccccccceeeEEEcCCCCEEE-EcCCCeEEE-eCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEE-CC-C
Confidence            33322221  1134578888998777555 445665543 3444443322211 111224556666666666554 44 4


Q ss_pred             CeEEEEEc
Q 040370          176 NEIVIWDA  183 (228)
Q Consensus       176 ~~i~i~d~  183 (228)
                      |.|..|+-
T Consensus       323 G~il~~~~  330 (334)
T PRK13684        323 GVLLRYVG  330 (334)
T ss_pred             ceEEEecC
Confidence            88877763

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=96.36  E-value=0.12  Score=32.65  Aligned_cols=115  Identities=9%  Similarity=0.035  Sum_probs=67.4

Q ss_pred             eEEeCCCCCeEEEEecCCeEEEEeCCCC--------ceeeEEecccccceeEEEE---ECC--CCCEEEEeeCCCeEEEE
Q 040370           70 QVRYSSTGGMYVTASKDGAIRLWDGVSA--------NCVRSIVGAHGTAEATSAN---FTK--DQRFVLSCGKDSTVKLW  136 (228)
Q Consensus        70 ~~~~~~~~~~l~~~~~dg~v~iwd~~~~--------~~~~~~~~~~~~~~i~~~~---~~~--~~~~l~~~~~d~~i~~w  136 (228)
                      .-+|......|+.++.-|.|.|++....        ..+..+..   ...|++++   +.|  +...|+.|+. ..+..|
T Consensus         3 iGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNi---n~~italaaG~l~~~~~~D~LliGt~-t~llaY   78 (136)
T PF14781_consen    3 IGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNI---NQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAY   78 (136)
T ss_pred             EEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEEC---CCceEEEEEEecCCCCCcCEEEEecc-ceEEEE
Confidence            3456666667888888999999987643        23444444   44566665   433  3345666654 569999


Q ss_pred             EccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCccee
Q 040370          137 EVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKV  189 (228)
Q Consensus       137 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~  189 (228)
                      |+.+...+.....+..-..+..-.+......++..|+ +..|.-||..-.+..
T Consensus        79 DV~~N~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivGG-ncsi~Gfd~~G~e~f  130 (136)
T PF14781_consen   79 DVENNSDLFYKEVPDGVNAIVIGKLGDIPSPLVIVGG-NCSIQGFDYEGNEIF  130 (136)
T ss_pred             EcccCchhhhhhCccceeEEEEEecCCCCCcEEEECc-eEEEEEeCCCCcEEE
Confidence            9987665544333222222222234443344444455 488888886544443

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=96.34  E-value=0.13  Score=42.20  Aligned_cols=119  Identities=12%  Similarity=0.149  Sum_probs=76.5

Q ss_pred             cceEEEEEeC--CCCEEEEecCCCeEEEEEccc-------c----eE----EeeeccceeeeccceeeEEeC--CCCCeE
Q 040370           20 HNVRSVSFHP--SGDFLLAGTDHPIAHLYDVNT-------F----QC----YLSANVPEISVNGAINQVRYS--STGGMY   80 (228)
Q Consensus        20 ~~v~~~~~~~--~~~~l~~~~~d~~i~vw~~~~-------~----~~----~~~~~~~~~~~~~~i~~~~~~--~~~~~l   80 (228)
                      ..|+-|....  +...|+.+.+||.|.+|..++       .    +.    ..............++.++++  ...++|
T Consensus       101 HtIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlI  180 (717)
T PF08728_consen  101 HTINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLI  180 (717)
T ss_pred             ceeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEE
Confidence            4466665544  567888999999999997632       1    00    000011122235678999998  778899


Q ss_pred             EEEecCCeEEEEeCCCC-ceeeEEecccccceeEEEEECCCC---C---EEEEeeCCCeEEEEEc
Q 040370           81 VTASKDGAIRLWDGVSA-NCVRSIVGAHGTAEATSANFTKDQ---R---FVLSCGKDSTVKLWEV  138 (228)
Q Consensus        81 ~~~~~dg~v~iwd~~~~-~~~~~~~~~~~~~~i~~~~~~~~~---~---~l~~~~~d~~i~~wd~  138 (228)
                      |+++....|.||-.... +.......+.+...|.+++|-++.   .   .+++++-.|.+.+|++
T Consensus       181 AVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  181 AVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             EEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            99998888888865432 111111122235568888887743   2   7888999999999888

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.34  E-value=0.067  Score=45.53  Aligned_cols=148  Identities=9%  Similarity=-0.011  Sum_probs=92.7

Q ss_pred             cceEEEEEeCCCCEEEE--ecCCCeEEEEEcccceEEee--------eccceeeeccceeeEEeCCCC-CeEEEEecCCe
Q 040370           20 HNVRSVSFHPSGDFLLA--GTDHPIAHLYDVNTFQCYLS--------ANVPEISVNGAINQVRYSSTG-GMYVTASKDGA   88 (228)
Q Consensus        20 ~~v~~~~~~~~~~~l~~--~~~d~~i~vw~~~~~~~~~~--------~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~   88 (228)
                      -++..+...+|+...++  .+++-.|..||+++......        ....... .....++.|+|.- ...+.+..|+.
T Consensus       101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek-~vf~~~~~wnP~vp~n~av~l~dls  179 (1405)
T KOG3630|consen  101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEK-PVFQLKNVWNPLVPLNSAVDLSDLS  179 (1405)
T ss_pred             ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhcc-ccccccccccCCccchhhhhccccc
Confidence            35556666677655543  33445788999876432111        0111111 3345678899853 34677778999


Q ss_pred             EEEEeCCCCce-eeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecce--eeeeeeEEEECCCC
Q 040370           89 IRLWDGVSANC-VRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGAT--HTQLRFQAVFNDTE  165 (228)
Q Consensus        89 v~iwd~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~  165 (228)
                      |++..+..... ...+..   ....++++|+|.|+.++.|-..|++.-|... ++....+....  ....+.+++|-...
T Consensus       180 l~V~~~~~~~~~v~s~p~---t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~Wl~t~  255 (1405)
T KOG3630|consen  180 LRVKSTKQLAQNVTSFPV---TNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTWLSTQ  255 (1405)
T ss_pred             hhhhhhhhhhhhhcccCc---ccceeeEEeccccceeeEecCCCeEEEeecc-cceeecccCCCcCCCcceeEEEEecce
Confidence            99887653322 222222   5678999999999999999999999999764 34333333221  23567888888877


Q ss_pred             cEEEEee
Q 040370          166 EFVLSID  172 (228)
Q Consensus       166 ~~~~~~~  172 (228)
                      .++++-+
T Consensus       256 eflvvy~  262 (1405)
T KOG3630|consen  256 EFLVVYG  262 (1405)
T ss_pred             eEEEEec
Confidence            7777644

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=96.33  E-value=0.024  Score=27.93  Aligned_cols=31  Identities=29%  Similarity=0.495  Sum_probs=26.4

Q ss_pred             cceEEEEEeCC-C--CEEEEecCCCeEEEEEccc
Q 040370           20 HNVRSVSFHPS-G--DFLLAGTDHPIAHLYDVNT   50 (228)
Q Consensus        20 ~~v~~~~~~~~-~--~~l~~~~~d~~i~vw~~~~   50 (228)
                      +.|+++.|+|+ +  ++|+.+-..|.|.|+|+++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            46899999984 4  6888888889999999985

It contains a characteristic DLL sequence motif.

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=96.25  E-value=0.095  Score=36.71  Aligned_cols=77  Identities=19%  Similarity=0.180  Sum_probs=52.3

Q ss_pred             CcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeee----cccee------eeccceeeEEeCCCCCeEEEEecCCe
Q 040370           19 THNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSA----NVPEI------SVNGAINQVRYSSTGGMYVTASKDGA   88 (228)
Q Consensus        19 ~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~----~~~~~------~~~~~i~~~~~~~~~~~l~~~~~dg~   88 (228)
                      ..++..+.  .++++|++-+.+|.+++||+.+++.....    .....      .....|..+..+.+|.-+++-+ +|.
T Consensus        12 gs~~~~l~--~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~   88 (219)
T PF07569_consen   12 GSPVSFLE--CNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGD   88 (219)
T ss_pred             CCceEEEE--eCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCC
Confidence            33444444  47889999999999999999998765433    11110      1256788888888887666654 577


Q ss_pred             EEEEeCCCCc
Q 040370           89 IRLWDGVSAN   98 (228)
Q Consensus        89 v~iwd~~~~~   98 (228)
                      .+.|+..-+.
T Consensus        89 ~y~y~~~L~~   98 (219)
T PF07569_consen   89 SYSYSPDLGC   98 (219)
T ss_pred             EEEeccccce
Confidence            8888865443

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=96.18  E-value=0.52  Score=38.86  Aligned_cols=149  Identities=14%  Similarity=0.166  Sum_probs=84.8

Q ss_pred             CCEEEEecCCCeEEEEEcccceEEee------e-ccce--------e---eeccceeeEEeCC--CCCeEEEEecCCeEE
Q 040370           31 GDFLLAGTDHPIAHLYDVNTFQCYLS------A-NVPE--------I---SVNGAINQVRYSS--TGGMYVTASKDGAIR   90 (228)
Q Consensus        31 ~~~l~~~~~d~~i~vw~~~~~~~~~~------~-~~~~--------~---~~~~~i~~~~~~~--~~~~l~~~~~dg~v~   90 (228)
                      .+++++|. .+.|.||++........      + ..+.        .   .....|+.|....  ....|+.|..||.|.
T Consensus        49 ~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~  127 (717)
T PF08728_consen   49 RNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVL  127 (717)
T ss_pred             CCEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEE
Confidence            66676665 57899999865332110      0 0000        0   0012355554433  445888999999999


Q ss_pred             EEeCCC-------C----c---------eeeEEecccccceeEEEEEC--CCCCEEEEeeCCCeEEEEEccCCe-eEEEE
Q 040370           91 LWDGVS-------A----N---------CVRSIVGAHGTAEATSANFT--KDQRFVLSCGKDSTVKLWEVSSGR-LVKQY  147 (228)
Q Consensus        91 iwd~~~-------~----~---------~~~~~~~~~~~~~i~~~~~~--~~~~~l~~~~~d~~i~~wd~~~~~-~~~~~  147 (228)
                      +|.+++       .    .         +...+.   ....+++++++  ...+++|+++....|.||-..... .....
T Consensus       128 ~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~---v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~  204 (717)
T PF08728_consen  128 AYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR---VGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHV  204 (717)
T ss_pred             EEEHHHHHHHHHhhccccccccccccCCCCeEee---cCCceeEEEEEecCcceEEEEecCCceEEEEEEeccccccccc
Confidence            996521       1    0         111122   25578999998  778888888888888887665421 11111


Q ss_pred             ecceeeeeeeEEEECCCC-----cEEEEeeCCCCeEEEEEc
Q 040370          148 LGATHTQLRFQAVFNDTE-----EFVLSIDEPSNEIVIWDA  183 (228)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~~d~~i~i~d~  183 (228)
                      ..+.+...+.++.|-++.     ...+++.+-.|.+.+|++
T Consensus       205 ~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  205 PSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             cccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            112244445566665443     224444444699998887

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=96.16  E-value=0.37  Score=36.19  Aligned_cols=106  Identities=14%  Similarity=0.189  Sum_probs=55.0

Q ss_pred             ceEEEEEeCCCCEEEEecCCCeEEEEEcccceE---EeeeccceeeeccceeeEEeCCC---CCeEEEEec-C-------
Q 040370           21 NVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQC---YLSANVPEISVNGAINQVRYSST---GGMYVTASK-D-------   86 (228)
Q Consensus        21 ~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~---~~~~~~~~~~~~~~i~~~~~~~~---~~~l~~~~~-d-------   86 (228)
                      ..++|+|.|+++.+++ ...|.|++++ ..+..   +................++++|+   ..+|..... .       
T Consensus         3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~   80 (331)
T PF07995_consen    3 NPRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN   80 (331)
T ss_dssp             SEEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred             CceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence            4678999999877665 5599999999 34433   22221111111557889999994   233333332 1       


Q ss_pred             -CeEEEEeCCCC-------cee-eEEec-ccccceeEEEEECCCCCEEEEee
Q 040370           87 -GAIRLWDGVSA-------NCV-RSIVG-AHGTAEATSANFTKDQRFVLSCG  128 (228)
Q Consensus        87 -g~v~iwd~~~~-------~~~-~~~~~-~~~~~~i~~~~~~~~~~~l~~~~  128 (228)
                       ..|.-|....+       +.+ ..+.. ....-....+.|.||+.+.++.+
T Consensus        81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G  132 (331)
T PF07995_consen   81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVG  132 (331)
T ss_dssp             EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB
T ss_pred             ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeC
Confidence             23444444332       111 11122 01122346699999997666655

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=96.13  E-value=0.45  Score=36.82  Aligned_cols=144  Identities=9%  Similarity=0.126  Sum_probs=83.4

Q ss_pred             CCeEEEEecCCeEEEEeCCCCc-----eeeEEecccccceeEEEEECC----CCCEEEEeeCCCeEEEEEccCC--e---
Q 040370           77 GGMYVTASKDGAIRLWDGVSAN-----CVRSIVGAHGTAEATSANFTK----DQRFVLSCGKDSTVKLWEVSSG--R---  142 (228)
Q Consensus        77 ~~~l~~~~~dg~v~iwd~~~~~-----~~~~~~~~~~~~~i~~~~~~~----~~~~l~~~~~d~~i~~wd~~~~--~---  142 (228)
                      ...+++|+..|.++||+...+.     .+.+.+.   +.+|..+..-+    .....++.-.-+.+.+|.+...  .   
T Consensus        37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l---~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~  113 (418)
T PF14727_consen   37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQL---KDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEH  113 (418)
T ss_pred             ccEEEEeccccEEEEEccCCCCCCCccEEEEEec---CCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCccc
Confidence            4589999999999999986543     2222222   56777766432    2223333356677888887321  1   


Q ss_pred             ----eEEEEecceeeeeeeEEEEC----CCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEE
Q 040370          143 ----LVKQYLGATHTQLRFQAVFN----DTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFIT  214 (228)
Q Consensus       143 ----~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s  214 (228)
                          .+.....|.-......++.-    ..++..++.-+.||.+.+|+-+.......+ .. .--...+.+.+..+.|++
T Consensus       114 g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~l-p~-~llPgPl~Y~~~tDsfvt  191 (418)
T PF14727_consen  114 GNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFL-PD-FLLPGPLCYCPRTDSFVT  191 (418)
T ss_pred             CcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEc-CC-CCCCcCeEEeecCCEEEE
Confidence                12222222222222333322    233566666777999999996554433333 22 222334678888888999


Q ss_pred             ecCCCCEEEee
Q 040370          215 CGTDRSVRFWK  225 (228)
Q Consensus       215 ~~~dg~i~vwd  225 (228)
                      ++.+..+.-|+
T Consensus       192 ~sss~~l~~Yk  202 (418)
T PF14727_consen  192 ASSSWTLECYK  202 (418)
T ss_pred             ecCceeEEEec
Confidence            98888777765

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=96.07  E-value=0.33  Score=34.80  Aligned_cols=119  Identities=11%  Similarity=0.116  Sum_probs=76.6

Q ss_pred             cceeeEEeCCCCCeEEEEecCC--eEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCee
Q 040370           66 GAINQVRYSSTGGMYVTASKDG--AIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRL  143 (228)
Q Consensus        66 ~~i~~~~~~~~~~~l~~~~~dg--~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~  143 (228)
                      .-...+.|..++.++-+.+.-|  .|+.+|+.+++......... ..---.++.. +++...-.-.++...+||..+.+.
T Consensus        45 aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~-~~FgEGit~~-~d~l~qLTWk~~~~f~yd~~tl~~  122 (264)
T PF05096_consen   45 AFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPP-RYFGEGITIL-GDKLYQLTWKEGTGFVYDPNTLKK  122 (264)
T ss_dssp             -EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TT-T--EEEEEEE-TTEEEEEESSSSEEEEEETTTTEE
T ss_pred             ccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCc-cccceeEEEE-CCEEEEEEecCCeEEEEccccceE
Confidence            3456778867787777777666  69999999998876665532 2222344444 344555666889999999999998


Q ss_pred             EEEEecceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEe
Q 040370          144 VKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKW  192 (228)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~  192 (228)
                      +.++.-.. .  -..++  .++..++.+.+ ...++++|..+.+....+
T Consensus       123 ~~~~~y~~-E--GWGLt--~dg~~Li~SDG-S~~L~~~dP~~f~~~~~i  165 (264)
T PF05096_consen  123 IGTFPYPG-E--GWGLT--SDGKRLIMSDG-SSRLYFLDPETFKEVRTI  165 (264)
T ss_dssp             EEEEE-SS-S----EEE--ECSSCEEEE-S-SSEEEEE-TTT-SEEEEE
T ss_pred             EEEEecCC-c--ceEEE--cCCCEEEEECC-ccceEEECCcccceEEEE
Confidence            88886532 2  23333  45666777666 489999998877665554

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=96.06  E-value=0.36  Score=35.09  Aligned_cols=162  Identities=12%  Similarity=0.145  Sum_probs=95.6

Q ss_pred             eEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEE
Q 040370           12 AFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRL   91 (228)
Q Consensus        12 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i   91 (228)
                      .+....-.+-+..+.++  +++...+..+.-++|.|+.+............  .+--.++..  .|++...+..|.-+.+
T Consensus        79 l~~~i~~~~l~~Dv~vs--e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt--~gyaygv~v--sGn~aYVadlddgfLi  152 (370)
T COG5276          79 LLSVINARDLFADVRVS--EEYVYVADWSSGLRIVDISTPDSPTLIGFLNT--DGYAYGVYV--SGNYAYVADLDDGFLI  152 (370)
T ss_pred             eEEEEehhhhhheeEec--ccEEEEEcCCCceEEEeccCCCCcceeccccC--CceEEEEEe--cCCEEEEeeccCcEEE
Confidence            34444455667777775  56677777777799999987653222221110  233344555  4888888886666778


Q ss_pred             EeCCCCceee---EEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeee-eeeEEEECCCCcE
Q 040370           92 WDGVSANCVR---SIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQ-LRFQAVFNDTEEF  167 (228)
Q Consensus        92 wd~~~~~~~~---~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  167 (228)
                      .|+.+.+...   .....  ...-..++.+  |++-..+..|+-+.+.|+.+......+ ++.... ....+..+++..+
T Consensus       153 vdvsdpssP~lagrya~~--~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli-~~~n~g~g~~sv~vsdnr~y  227 (370)
T COG5276         153 VDVSDPSSPQLAGRYALP--GGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLI-GSYNTGPGTYSVSVSDNRAY  227 (370)
T ss_pred             EECCCCCCceeeeeeccC--CCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEE-EEEecCCceEEEEecCCeeE
Confidence            8887654332   22221  2222445554  788888889999999999875543332 222222 5566666666666


Q ss_pred             EEEeeCCCCeEEEEEcCCcc
Q 040370          168 VLSIDEPSNEIVIWDALTAE  187 (228)
Q Consensus       168 ~~~~~~~d~~i~i~d~~~~~  187 (228)
                      ++..+   -.+.+-|..+.+
T Consensus       228 ~vvy~---egvlivd~s~~s  244 (370)
T COG5276         228 LVVYD---EGVLIVDVSGPS  244 (370)
T ss_pred             EEEcc---cceEEEecCCCC
Confidence            65532   345666665544

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=96.05  E-value=0.28  Score=33.86  Aligned_cols=105  Identities=19%  Similarity=0.218  Sum_probs=60.1

Q ss_pred             CEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecC---C---eEEEE-eCCC----Ccee
Q 040370           32 DFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKD---G---AIRLW-DGVS----ANCV  100 (228)
Q Consensus        32 ~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g---~v~iw-d~~~----~~~~  100 (228)
                      +.|..+.....|.+|++...++........   -+.|..+.++..|++++|--++   .   .+|+| |.+.    .+++
T Consensus        29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T---v~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v  105 (215)
T PF14761_consen   29 DALFVAASGCKVEVYDLEQEECPLLCTFST---VGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPV  105 (215)
T ss_pred             ceEEEEcCCCEEEEEEcccCCCceeEEEcc---hhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcE
Confidence            445444556789999998444333222222   5789999999999999987432   2   56665 2111    1111


Q ss_pred             e-E--------------------EecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCC
Q 040370          101 R-S--------------------IVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSG  141 (228)
Q Consensus       101 ~-~--------------------~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~  141 (228)
                      . .                    +..+- ..++.+++..|-..-|+.|+ ++.+.+|.+...
T Consensus       106 ~vRiaG~~v~~~~~~~~~~qleiiElPl-~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~~  165 (215)
T PF14761_consen  106 RVRIAGHRVTPSFNESSKDQLEIIELPL-SEPPLCIACCPVTGNLLVGC-GNKLVLFTLKYQ  165 (215)
T ss_pred             EEEEcccccccCCCCccccceEEEEecC-CCCCCEEEecCCCCCEEEEc-CCEEEEEEEEEE
Confidence            1 1                    11111 34566777777333344554 456888877543

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=96.05  E-value=0.081  Score=37.05  Aligned_cols=66  Identities=11%  Similarity=0.129  Sum_probs=47.9

Q ss_pred             ECCCCcEEEEeeCCCCeEEEEEcCCcceeEEe------ec-------CCCCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370          161 FNDTEEFVLSIDEPSNEIVIWDALTAEKVAKW------SS-------NHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEI  227 (228)
Q Consensus       161 ~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~------~~-------~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~  227 (228)
                      +...+.++++... +|.+++||+++++.+..-      ..       .....|..+.++.+|.-+++-+ +|....|+..
T Consensus        18 l~~~~~~Ll~iT~-~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~   95 (219)
T PF07569_consen   18 LECNGSYLLAITS-SGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPD   95 (219)
T ss_pred             EEeCCCEEEEEeC-CCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEeccc
Confidence            3456777777666 699999999988765443      11       2456788899998888777665 5788888865


Q ss_pred             C
Q 040370          228 L  228 (228)
Q Consensus       228 l  228 (228)
                      |
T Consensus        96 L   96 (219)
T PF07569_consen   96 L   96 (219)
T ss_pred             c
Confidence            4

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.04  E-value=0.2  Score=38.61  Aligned_cols=105  Identities=9%  Similarity=0.114  Sum_probs=63.7

Q ss_pred             ccceeeEEeCCCCCeEEEEecCCeEEEEeCCCCceee--EEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCe
Q 040370           65 NGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVR--SIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGR  142 (228)
Q Consensus        65 ~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~  142 (228)
                      .++|.++.|++|.+.+|.--.+.+|.+.+....+...  ..........|....|+.+ .-+|.....| +-+|-....+
T Consensus        66 ~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pek  143 (657)
T KOG2377|consen   66 KGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPEK  143 (657)
T ss_pred             CCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchhh
Confidence            6799999999999999999999999999874322221  1112222456888999876 4455554444 6666554322


Q ss_pred             -eEEEEecceeeeeeeEEEECCCCcEEEEeeC
Q 040370          143 -LVKQYLGATHTQLRFQAVFNDTEEFVLSIDE  173 (228)
Q Consensus       143 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (228)
                       .++..+.  +...+.-..|.++.+.++.+.+
T Consensus       144 rslRlVks--~~~nvnWy~yc~et~v~LL~t~  173 (657)
T KOG2377|consen  144 RSLRLVKS--HNLNVNWYMYCPETAVILLSTT  173 (657)
T ss_pred             hhhhhhhh--cccCccEEEEccccceEeeecc
Confidence             2222222  3344455556666665554433

>PHA02790 Kelch-like protein; Provisional

Probab=95.91  E-value=0.66  Score=36.90  Aligned_cols=106  Identities=8%  Similarity=-0.048  Sum_probs=53.4

Q ss_pred             CCCEEEEecCC--CeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCC---eEEEEeCCCCceeeEEe
Q 040370           30 SGDFLLAGTDH--PIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDG---AIRLWDGVSANCVRSIV  104 (228)
Q Consensus        30 ~~~~l~~~~~d--~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg---~v~iwd~~~~~~~~~~~  104 (228)
                      ++...+.|+.+  ..+..||..+++-......+..  ......+..  +|+..+.|+.++   .+..||.++.+-...-.
T Consensus       318 ~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~--r~~~~~~~~--~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~  393 (480)
T PHA02790        318 NNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKP--RCNPAVASI--NNVIYVIGGHSETDTTTEYLLPNHDQWQFGPS  393 (480)
T ss_pred             CCEEEEECCcCCCCceEEEECCCCeEEECCCCCCC--CcccEEEEE--CCEEEEecCcCCCCccEEEEeCCCCEEEeCCC
Confidence            56666777753  3577788766543322222211  111122222  577777777553   47788887665332211


Q ss_pred             cccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeE
Q 040370          105 GAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLV  144 (228)
Q Consensus       105 ~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~  144 (228)
                      ........ +++ .-+++..+.|   |.+.+||.++.+..
T Consensus       394 m~~~r~~~-~~~-~~~~~IYv~G---G~~e~ydp~~~~W~  428 (480)
T PHA02790        394 TYYPHYKS-CAL-VFGRRLFLVG---RNAEFYCESSNTWT  428 (480)
T ss_pred             CCCccccc-eEE-EECCEEEEEC---CceEEecCCCCcEe
Confidence            11101111 221 2245555666   35778998876554

>PRK10115 protease 2; Provisional

Probab=95.91  E-value=0.84  Score=38.10  Aligned_cols=112  Identities=13%  Similarity=0.133  Sum_probs=66.7

Q ss_pred             ceeeEEeCCCCCeEEEEe-----cCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCC------CeEEE
Q 040370           67 AINQVRYSSTGGMYVTAS-----KDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKD------STVKL  135 (228)
Q Consensus        67 ~i~~~~~~~~~~~l~~~~-----~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d------~~i~~  135 (228)
                      .+..+.++|++++|+.+.     +...+++.|+.++..+.....   ... ..++|.+|++.|+....+      ..|+.
T Consensus       128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~---~~~-~~~~w~~D~~~~~y~~~~~~~~~~~~v~~  203 (686)
T PRK10115        128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLD---NVE-PSFVWANDSWTFYYVRKHPVTLLPYQVWR  203 (686)
T ss_pred             EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCcccc---Ccc-eEEEEeeCCCEEEEEEecCCCCCCCEEEE
Confidence            467788999999877553     224588999988864332222   112 458999998876655432      36888


Q ss_pred             EEccCC--eeEEEEecceeeeeeeEEEECCCCcEEEEeeC--CCCeEEEEEc
Q 040370          136 WEVSSG--RLVKQYLGATHTQLRFQAVFNDTEEFVLSIDE--PSNEIVIWDA  183 (228)
Q Consensus       136 wd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~d~~i~i~d~  183 (228)
                      +++.++  +....+........ .....+.++.+++....  .++.+.+++.
T Consensus       204 h~lgt~~~~d~lv~~e~~~~~~-~~~~~s~d~~~l~i~~~~~~~~~~~l~~~  254 (686)
T PRK10115        204 HTIGTPASQDELVYEEKDDTFY-VSLHKTTSKHYVVIHLASATTSEVLLLDA  254 (686)
T ss_pred             EECCCChhHCeEEEeeCCCCEE-EEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence            888877  33333332212122 23334446766554332  3467888884

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=95.87  E-value=0.38  Score=33.78  Aligned_cols=137  Identities=10%  Similarity=0.084  Sum_probs=78.0

Q ss_pred             ccceeeEEeCCCCCeEEEEecC---------CeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEE-EeeCCCeEE
Q 040370           65 NGAINQVRYSSTGGMYVTASKD---------GAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVL-SCGKDSTVK  134 (228)
Q Consensus        65 ~~~i~~~~~~~~~~~l~~~~~d---------g~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~d~~i~  134 (228)
                      +.+.+.-..+|+|++++-.-.|         |.++.|-..  ..+..+...  -.--+.++|+.+.+.+. +-+.+-+|.
T Consensus       108 knR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~--h~v~~i~~~--v~IsNgl~Wd~d~K~fY~iDsln~~V~  183 (310)
T KOG4499|consen  108 KNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAG--HQVELIWNC--VGISNGLAWDSDAKKFYYIDSLNYEVD  183 (310)
T ss_pred             hcccccCccCCCCceeeeeeccccccccccccEEEEeccC--CCceeeehh--ccCCccccccccCcEEEEEccCceEEe
Confidence            4567778889999984422222         334444321  111111111  12235688888777655 445666787


Q ss_pred             EEE--ccCCee-----EEEEecce--eeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEe
Q 040370          135 LWE--VSSGRL-----VKQYLGAT--HTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEH  205 (228)
Q Consensus       135 ~wd--~~~~~~-----~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~  205 (228)
                      -||  ..+|..     +..++...  .....-.++...+|...+++-. .++|...|..+|+.+.++. -....+++++|
T Consensus       184 a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~n-g~~V~~~dp~tGK~L~eik-lPt~qitsccF  261 (310)
T KOG4499|consen  184 AYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFN-GGTVQKVDPTTGKILLEIK-LPTPQITSCCF  261 (310)
T ss_pred             eeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEec-CcEEEEECCCCCcEEEEEE-cCCCceEEEEe
Confidence            777  545432     22222210  1111122334455665555444 5999999999999999884 44778999999


Q ss_pred             CC
Q 040370          206 SP  207 (228)
Q Consensus       206 ~~  207 (228)
                      --
T Consensus       262 gG  263 (310)
T KOG4499|consen  262 GG  263 (310)
T ss_pred             cC
Confidence            64

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.84  E-value=0.61  Score=38.32  Aligned_cols=179  Identities=12%  Similarity=0.146  Sum_probs=83.7

Q ss_pred             cceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCCCce
Q 040370           20 HNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANC   99 (228)
Q Consensus        20 ~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~   99 (228)
                      .++-.+.|+.+. .|++...+|++.+|++-.... .............|..+.+..+|-.++  ..+|.+.+-+-.....
T Consensus        84 ~~lI~mgWs~~e-eLI~v~k~g~v~Vy~~~ge~i-e~~svg~e~~~~~I~ec~~f~~GVavl--t~~g~v~~i~~~~~~~  159 (829)
T KOG2280|consen   84 GELIGMGWSDDE-ELICVQKDGTVHVYGLLGEFI-ESNSVGFESQMSDIVECRFFHNGVAVL--TVSGQVILINGVEEPK  159 (829)
T ss_pred             CCeeeecccCCc-eEEEEeccceEEEeecchhhh-cccccccccccCceeEEEEecCceEEE--ecCCcEEEEcCCCcch
Confidence            378889998554 566678899999999864332 221111111134465566655663333  3445554443222212


Q ss_pred             eeEEec-ccccceeEEEEECCCCC---EEEEee-CCCeEEEEEccCCe-eEEEEecceeeeeeeEEEECCCCcEEEEeeC
Q 040370          100 VRSIVG-AHGTAEATSANFTKDQR---FVLSCG-KDSTVKLWEVSSGR-LVKQYLGATHTQLRFQAVFNDTEEFVLSIDE  173 (228)
Q Consensus       100 ~~~~~~-~~~~~~i~~~~~~~~~~---~l~~~~-~d~~i~~wd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (228)
                      ..+++. +....+-.|-...+++.   .++-.. ..+ ..++-...+. ....+..  ....+..+..+|+.++++.-..
T Consensus       160 ~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~~~q~~~~~~--~~~~~~ki~VS~n~~~laLyt~  236 (829)
T KOG2280|consen  160 LRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVEESRVQLHALSW--PNSSVVKISVSPNRRFLALYTE  236 (829)
T ss_pred             hhhCCCCCCccCCCcceeEecCCCcceeEEeechhhh-hcccceecccccccccCC--CCceEEEEEEcCCcceEEEEec
Confidence            222222 11111112222222211   111111 000 1111111111 1111111  2355677888899998887666


Q ss_pred             CCCeEEEEEcCCcceeEEeecCCCCCcEEEEeC
Q 040370          174 PSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHS  206 (228)
Q Consensus       174 ~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~  206 (228)
                       .|.|.+-+....+....+...-..+.-.++|.
T Consensus       237 -~G~i~~vs~D~~~~lce~~~~~~~~p~qm~Wc  268 (829)
T KOG2280|consen  237 -TGKIWVVSIDLSQILCEFNCTDHDPPKQMAWC  268 (829)
T ss_pred             -CCcEEEEecchhhhhhccCCCCCCchHhceee
Confidence             58888888776666555532222333345553

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=95.76  E-value=0.52  Score=34.50  Aligned_cols=186  Identities=12%  Similarity=0.097  Sum_probs=98.6

Q ss_pred             cceEEEEEeCCCC------------EEEEecCCCeEEEEEcccceE---Eeeeccceeeeccce-eeEEeCC--CCCeEE
Q 040370           20 HNVRSVSFHPSGD------------FLLAGTDHPIAHLYDVNTFQC---YLSANVPEISVNGAI-NQVRYSS--TGGMYV   81 (228)
Q Consensus        20 ~~v~~~~~~~~~~------------~l~~~~~d~~i~vw~~~~~~~---~~~~~~~~~~~~~~i-~~~~~~~--~~~~l~   81 (228)
                      ...+.+.|+....            .++.+++||+|.-|...-+..   .......... .+.| ..+++..  .+.+|.
T Consensus        77 ~~PTGiVfN~~~~F~vt~~g~~~~a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~-~gavYkGLAi~~~~~~~~LY  155 (336)
T TIGR03118        77 GTPTGQVFNGSDTFVVSGEGITGPSRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQ-QGNVYKGLAVGPTGGGDYLY  155 (336)
T ss_pred             CCccEEEEeCCCceEEcCCCcccceeEEEEeCCceEEeecCcCCcccccccEEEEccCC-CcceeeeeEEeecCCCceEE
Confidence            4677888875333            356778899999998543222   0111110000 1222 3445443  355565


Q ss_pred             EEe-cCCeEEEEeCCCCceee--EEecc--------------cccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeE
Q 040370           82 TAS-KDGAIRLWDGVSANCVR--SIVGA--------------HGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLV  144 (228)
Q Consensus        82 ~~~-~dg~v~iwd~~~~~~~~--~~~~~--------------~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~  144 (228)
                      .+. ..++|.++|-.-.+...  .+...              ...-.|+-..-.++...=+.|..-|.|-+||+ .++.+
T Consensus       156 aadF~~g~IDVFd~~f~~~~~~g~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~-~G~l~  234 (336)
T TIGR03118       156 AANFRQGRIDVFKGSFRPPPLPGSFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTL-NGQLL  234 (336)
T ss_pred             EeccCCCceEEecCccccccCCCCccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcC-CCcEE
Confidence            554 57889999854222110  01000              00111222222333333334445578999997 47788


Q ss_pred             EEEecceeeeeeeEEEECC-----CCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCC-----CcEEEEeCC
Q 040370          145 KQYLGATHTQLRFQAVFND-----TEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIG-----APRWIEHSP  207 (228)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~-----~v~~~~~~~  207 (228)
                      +++.....-.....++..|     -...++++...||+|..||..+++.+..+......     .++.|+|..
T Consensus       235 ~r~as~g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGn  307 (336)
T TIGR03118       235 RRVASSGRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGN  307 (336)
T ss_pred             EEeccCCcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCC
Confidence            8775333333333444333     23445666666999999999999888777433222     456777754

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=95.62  E-value=0.095  Score=40.26  Aligned_cols=166  Identities=16%  Similarity=0.162  Sum_probs=99.6

Q ss_pred             cCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeec---ccee-eEEeCCCCCeEEEEecCCeEEEE-
Q 040370           18 DTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVN---GAIN-QVRYSSTGGMYVTASKDGAIRLW-   92 (228)
Q Consensus        18 ~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~---~~i~-~~~~~~~~~~l~~~~~dg~v~iw-   92 (228)
                      ....|..+-..|||+.+..-+. .++.++++.+...... +.......   ..|+ .+..-..|.-++.++.||.|.-| 
T Consensus       219 ~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~r-kl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWF  296 (733)
T COG4590         219 PFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIR-KLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQWF  296 (733)
T ss_pred             CccchHhhEECCCCCEEEEecC-CeEEEEeecccccchh-hhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeeee
Confidence            4567888889999999887665 5788998876432211 11111101   1222 22223356678889999999888 


Q ss_pred             eCCCCc-----eeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcE
Q 040370           93 DGVSAN-----CVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEF  167 (228)
Q Consensus        93 d~~~~~-----~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (228)
                      |++.+.     .++.++..  ..++..+.-..+.+-+++-+..|++.++.-...+.+-. +.  .......+.++|.+.+
T Consensus       297 dvr~~~~p~l~h~R~f~l~--pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~-~~--~~~~~~~~~~Sp~~~~  371 (733)
T COG4590         297 DVRRDGQPHLNHIRNFKLA--PAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLF-ER--AYQAPQLVAMSPNQAY  371 (733)
T ss_pred             eeecCCCCcceeeeccccC--cccceeeccccccceEEEEcCCCceeeeecccCcceeh-hh--hhcCcceeeeCcccch
Confidence            554332     12222221  34444443333455677888888888876544333221 11  2234567889999999


Q ss_pred             EEEeeCCCCeEEEEEcCCcceeEEe
Q 040370          168 VLSIDEPSNEIVIWDALTAEKVAKW  192 (228)
Q Consensus       168 ~~~~~~~d~~i~i~d~~~~~~~~~~  192 (228)
                      +++-.  .|.++++.+.+..+..++
T Consensus       372 Ll~e~--~gki~~~~l~Nr~Peisw  394 (733)
T COG4590         372 LLSED--QGKIRLAQLENRNPEISW  394 (733)
T ss_pred             heeec--CCceEEEEecCCCCCccH
Confidence            98854  389999998776654443

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=95.61  E-value=0.16  Score=40.96  Aligned_cols=74  Identities=16%  Similarity=0.304  Sum_probs=45.0

Q ss_pred             CCCCeEEEEecCCeEEEEeCCC----CceeeEEecc--------------------cccceeEEEEECC----CCCEEEE
Q 040370           75 STGGMYVTASKDGAIRLWDGVS----ANCVRSIVGA--------------------HGTAEATSANFTK----DQRFVLS  126 (228)
Q Consensus        75 ~~~~~l~~~~~dg~v~iwd~~~----~~~~~~~~~~--------------------~~~~~i~~~~~~~----~~~~l~~  126 (228)
                      ++...++.+..||.+.......    +.........                    ........+++++    +..++++
T Consensus       156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t  235 (547)
T PF11715_consen  156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT  235 (547)
T ss_dssp             -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred             cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence            3566788888899888877654    2221111110                    0123445566666    6789999


Q ss_pred             eeCCCeEEEEEccCCeeEEEEe
Q 040370          127 CGKDSTVKLWEVSSGRLVKQYL  148 (228)
Q Consensus       127 ~~~d~~i~~wd~~~~~~~~~~~  148 (228)
                      .+.|+++|+||+.+++++....
T Consensus       236 l~~D~~LRiW~l~t~~~~~~~~  257 (547)
T PF11715_consen  236 LSRDHTLRIWSLETGQCLATID  257 (547)
T ss_dssp             EETTSEEEEEETTTTCEEEEEE
T ss_pred             EeCCCeEEEEECCCCeEEEEec
Confidence            9999999999999999866653

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=95.54  E-value=1.2  Score=37.24  Aligned_cols=77  Identities=14%  Similarity=0.262  Sum_probs=52.3

Q ss_pred             cceeeEEeCCCCCeEEEEecCCeEEEEeCCC---------Cce-e--eEE------ecccccceeEEEEECCC---CCEE
Q 040370           66 GAINQVRYSSTGGMYVTASKDGAIRLWDGVS---------ANC-V--RSI------VGAHGTAEATSANFTKD---QRFV  124 (228)
Q Consensus        66 ~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~---------~~~-~--~~~------~~~~~~~~i~~~~~~~~---~~~l  124 (228)
                      -.|..+..+|+|.+++..+..|.+.+.=.+.         ++. +  +.+      ........|..+.|+|.   +..|
T Consensus        85 f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l  164 (717)
T PF10168_consen   85 FEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHL  164 (717)
T ss_pred             eeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeE
Confidence            4688899999999999888866544432211         111 1  111      11123568889999995   5789


Q ss_pred             EEeeCCCeEEEEEccCCe
Q 040370          125 LSCGKDSTVKLWEVSSGR  142 (228)
Q Consensus       125 ~~~~~d~~i~~wd~~~~~  142 (228)
                      +.-..|+++|+||+...+
T Consensus       165 ~vLtsdn~lR~y~~~~~~  182 (717)
T PF10168_consen  165 VVLTSDNTLRLYDISDPQ  182 (717)
T ss_pred             EEEecCCEEEEEecCCCC
Confidence            999999999999997643

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=95.46  E-value=0.77  Score=34.46  Aligned_cols=151  Identities=10%  Similarity=0.126  Sum_probs=86.1

Q ss_pred             CcceEEEEEeCCCCEEEEecCCCe------EEEEEcccc----eEEeee---c--cceee----eccceeeEEeCCCCCe
Q 040370           19 THNVRSVSFHPSGDFLLAGTDHPI------AHLYDVNTF----QCYLSA---N--VPEIS----VNGAINQVRYSSTGGM   79 (228)
Q Consensus        19 ~~~v~~~~~~~~~~~l~~~~~d~~------i~vw~~~~~----~~~~~~---~--~~~~~----~~~~i~~~~~~~~~~~   79 (228)
                      -+.+..+.+.|++..+++.+++|.      +...++...    ..+...   .  ...+.    ..-...+|++.+++.+
T Consensus        19 ~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~   98 (326)
T PF13449_consen   19 FGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSF   98 (326)
T ss_pred             cCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCE
Confidence            367889999976666777777777      555555431    111100   0  00000    0113457888777877


Q ss_pred             EEEEecC------CeEEEEeCCCCceeeEEe-------------cccccceeEEEEECCCCCEEEEeeCC-----C--e-
Q 040370           80 YVTASKD------GAIRLWDGVSANCVRSIV-------------GAHGTAEATSANFTKDQRFVLSCGKD-----S--T-  132 (228)
Q Consensus        80 l~~~~~d------g~v~iwd~~~~~~~~~~~-------------~~~~~~~i~~~~~~~~~~~l~~~~~d-----~--~-  132 (228)
                      +++.-.+      ..|..++.. |+....+.             ........-+++++|+++.|+++.+.     +  . 
T Consensus        99 ~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~  177 (326)
T PF13449_consen   99 WISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRAN  177 (326)
T ss_pred             EEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCcccc
Confidence            7776666      788888876 65544431             11235567899999999977666432     2  1 


Q ss_pred             ------EEE--EEccC-CeeEEEE--ecce-----eeeeeeEEEECCCCcEEEE
Q 040370          133 ------VKL--WEVSS-GRLVKQY--LGAT-----HTQLRFQAVFNDTEEFVLS  170 (228)
Q Consensus       133 ------i~~--wd~~~-~~~~~~~--~~~~-----~~~~~~~~~~~~~~~~~~~  170 (228)
                            +++  ||..+ ++....+  ....     ....+..+.+-+++++++.
T Consensus       178 ~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL  231 (326)
T PF13449_consen  178 PDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL  231 (326)
T ss_pred             cccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence                  444  55544 3222222  2211     2455677888888887665

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=95.44  E-value=0.0016  Score=49.72  Aligned_cols=142  Identities=16%  Similarity=0.225  Sum_probs=95.4

Q ss_pred             eeEEeCCCCCeEEEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEE-EeeCCCeEEEEEccCCeeEEEE
Q 040370           69 NQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVL-SCGKDSTVKLWEVSSGRLVKQY  147 (228)
Q Consensus        69 ~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~d~~i~~wd~~~~~~~~~~  147 (228)
                      ....|-|.+.-++.++.+..+..|| +.++.......   ++....++|..++..++ .+-..+.+.+||+.+... ..+
T Consensus        38 i~~~w~~e~~nlavaca~tiv~~YD-~agq~~le~n~---tg~aldm~wDkegdvlavlAek~~piylwd~n~eyt-qqL  112 (615)
T KOG2247|consen   38 IIHRWRPEGHNLAVACANTIVIYYD-KAGQVILELNP---TGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYT-QQL  112 (615)
T ss_pred             ceeeEecCCCceehhhhhhHHHhhh-hhcceecccCC---chhHhhhhhccccchhhhhhhcCCCeeechhhhhhH-HHH
Confidence            3456777766688888889999999 45555555444   45667788888776544 455678899999975322 222


Q ss_pred             ecceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCC
Q 040370          148 LGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDR  219 (228)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg  219 (228)
                      ... ....-.-..|++....++... ..+.+.+++..+.+..... ..|...+.++++.+.+. .+.++.|.
T Consensus       113 E~g-g~~s~sll~wsKg~~el~ig~-~~gn~viynhgtsR~iiv~-Gkh~RRgtq~av~lEd~-vil~dcd~  180 (615)
T KOG2247|consen  113 ESG-GTSSKSLLAWSKGTPELVIGN-NAGNIVIYNHGTSRRIIVM-GKHQRRGTQIAVTLEDY-VILCDCDN  180 (615)
T ss_pred             hcc-CcchHHHHhhccCCccccccc-cccceEEEeccchhhhhhh-cccccceeEEEecccce-eeecCcHH
Confidence            211 111222366777777777754 4699999999888777766 34889999999998664 44444443

>PRK13684 Ycf48-like protein; Provisional

Probab=95.40  E-value=0.82  Score=34.44  Aligned_cols=153  Identities=11%  Similarity=0.108  Sum_probs=84.6

Q ss_pred             ccceeeEEeCCCCCeEEEEecCCeEEE-EeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCee
Q 040370           65 NGAINQVRYSSTGGMYVTASKDGAIRL-WDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRL  143 (228)
Q Consensus        65 ~~~i~~~~~~~~~~~l~~~~~dg~v~i-wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~  143 (228)
                      ...+..+.+.|++.+++++. .|.+.. +| ..++........ ....++++.+.++++.++.+ ..|.+++=....+..
T Consensus       172 ~g~~~~i~~~~~g~~v~~g~-~G~i~~s~~-~gg~tW~~~~~~-~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~s  247 (334)
T PRK13684        172 AGVVRNLRRSPDGKYVAVSS-RGNFYSTWE-PGQTAWTPHQRN-SSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLES  247 (334)
T ss_pred             cceEEEEEECCCCeEEEEeC-CceEEEEcC-CCCCeEEEeeCC-CcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCc
Confidence            45688899999887665554 455543 22 222333333332 25688999999988876665 567664323333332


Q ss_pred             EEEEecc--eeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEee--cCCCCCcEEEEeCCCCcEEEEecCCC
Q 040370          144 VKQYLGA--THTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWS--SNHIGAPRWIEHSPAEAAFITCGTDR  219 (228)
Q Consensus       144 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~s~~~dg  219 (228)
                      -.....+  ........+.+.+++..+++ +. +|.+. .....++.-....  ..-......+.|..+++.++ .+..|
T Consensus       248 W~~~~~~~~~~~~~l~~v~~~~~~~~~~~-G~-~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~~G  323 (334)
T PRK13684        248 WSKPIIPEITNGYGYLDLAYRTPGEIWAG-GG-NGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFV-LGQRG  323 (334)
T ss_pred             cccccCCccccccceeeEEEcCCCCEEEE-cC-CCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEE-ECCCc
Confidence            2221111  01233566778887765554 44 46555 3444444433331  12223577788776666555 55678


Q ss_pred             CEEEee
Q 040370          220 SVRFWK  225 (228)
Q Consensus       220 ~i~vwd  225 (228)
                      .|.-|+
T Consensus       324 ~il~~~  329 (334)
T PRK13684        324 VLLRYV  329 (334)
T ss_pred             eEEEec
Confidence            877665

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=95.34  E-value=0.84  Score=34.16  Aligned_cols=67  Identities=7%  Similarity=0.047  Sum_probs=35.5

Q ss_pred             CCCeEEEEec-----CCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCC----eEEEEEccCCee
Q 040370           76 TGGMYVTASK-----DGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDS----TVKLWEVSSGRL  143 (228)
Q Consensus        76 ~~~~l~~~~~-----dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~----~i~~wd~~~~~~  143 (228)
                      +++..+.|+.     ...+..||+.+.+-...-.... ...........+++..+.|+.++    .+..||+++.+.
T Consensus       123 ~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~-~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W  198 (323)
T TIGR03548       123 DGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPG-EPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQW  198 (323)
T ss_pred             CCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCC-CCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCee
Confidence            4666666664     2468888988765332211111 11111122233567777777654    356889887654

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=95.32  E-value=0.017  Score=47.76  Aligned_cols=166  Identities=12%  Similarity=0.057  Sum_probs=90.8

Q ss_pred             ecCcceEEEEEeC-CCCEEEEecCCCeEEEEEccc--ceEE----eeeccceeeeccceeeEEeCC---CCCeEEEEecC
Q 040370           17 QDTHNVRSVSFHP-SGDFLLAGTDHPIAHLYDVNT--FQCY----LSANVPEISVNGAINQVRYSS---TGGMYVTASKD   86 (228)
Q Consensus        17 ~~~~~v~~~~~~~-~~~~l~~~~~d~~i~vw~~~~--~~~~----~~~~~~~~~~~~~i~~~~~~~---~~~~l~~~~~d   86 (228)
                      +.++.|-.+.|-. +...++  -.-|.+.||+++-  |+..    .....+.   ...+.-+.|.|   +.-++..+-.+
T Consensus       130 gf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~---gs~~~~V~wcp~~~~~~~ic~~~~~  204 (1283)
T KOG1916|consen  130 GFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPY---GSDPQLVSWCPIAVNKVYICYGLKG  204 (1283)
T ss_pred             cCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcC---CCCcceeeecccccccceeeeccCC
Confidence            4567777777743 323333  3346788998763  3321    1111111   33445555655   55677778888


Q ss_pred             CeEEEEeCCCCceeeEEeccc---------ccceeEEEEECCCCCEEEEeeCCCeEEEEEcc-----CCeeEEEEeccee
Q 040370           87 GAIRLWDGVSANCVRSIVGAH---------GTAEATSANFTKDQRFVLSCGKDSTVKLWEVS-----SGRLVKQYLGATH  152 (228)
Q Consensus        87 g~v~iwd~~~~~~~~~~~~~~---------~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~-----~~~~~~~~~~~~~  152 (228)
                      +.+++....+... ..+..|.         ..+.+.--..+|||..++.++.||.+++|.+.     ..+++...+.+..
T Consensus       205 ~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~  283 (1283)
T KOG1916|consen  205 GEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDK  283 (1283)
T ss_pred             CceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCC
Confidence            9998887654322 1122221         01112222379999999999999998888653     2334444444332


Q ss_pred             eeeeeEEEECCC---------CcEEEEeeCCCCeEEEEEcCCccee
Q 040370          153 TQLRFQAVFNDT---------EEFVLSIDEPSNEIVIWDALTAEKV  189 (228)
Q Consensus       153 ~~~~~~~~~~~~---------~~~~~~~~~~d~~i~i~d~~~~~~~  189 (228)
                      ...++.. +...         -.+++.+...+..+++|....-+++
T Consensus       284 ~p~vC~l-c~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl  328 (1283)
T KOG1916|consen  284 HPRVCWL-CHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL  328 (1283)
T ss_pred             CCceeee-eccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence            2222222 3322         2344555555678888886655554

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=95.29  E-value=0.61  Score=33.22  Aligned_cols=131  Identities=8%  Similarity=0.076  Sum_probs=73.6

Q ss_pred             EEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCC---CeEEEEEccC----CeeEEEEecceeeeeeeEEEE
Q 040370           89 IRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKD---STVKLWEVSS----GRLVKQYLGATHTQLRFQAVF  161 (228)
Q Consensus        89 v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---~~i~~wd~~~----~~~~~~~~~~~~~~~~~~~~~  161 (228)
                      -.+||+.+++... +.... ..-+.+-.+-+||+.+.+|+..   ..+++++...    .........-...........
T Consensus        48 s~~yD~~tn~~rp-l~v~t-d~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~  125 (243)
T PF07250_consen   48 SVEYDPNTNTFRP-LTVQT-DTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATT  125 (243)
T ss_pred             EEEEecCCCcEEe-ccCCC-CCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceE
Confidence            4578988876432 32221 3344455678899999988752   3588887644    111111000112333445556


Q ss_pred             CCCCcEEEEeeCCCCeEEEEEcCCc-ceeEE--eec-----CCCCCcEEEEeCCCCcEEEEecCCCCE
Q 040370          162 NDTEEFVLSIDEPSNEIVIWDALTA-EKVAK--WSS-----NHIGAPRWIEHSPAEAAFITCGTDRSV  221 (228)
Q Consensus       162 ~~~~~~~~~~~~~d~~i~i~d~~~~-~~~~~--~~~-----~~~~~v~~~~~~~~~~~l~s~~~dg~i  221 (228)
                      -++|+.++.+|.......+|.-+.. .....  +..     ....--.-+...|+|++++.+..+..|
T Consensus       126 L~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s~i  193 (243)
T PF07250_consen  126 LPDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGSII  193 (243)
T ss_pred             CCCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCcEE
Confidence            6899999998887666777765321 11111  111     011122346678999999998876544

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=95.29  E-value=0.61  Score=32.29  Aligned_cols=100  Identities=9%  Similarity=0.203  Sum_probs=59.9

Q ss_pred             CEEEEeeCCCeEEEEEccC--CeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCC-----eEEEE-EcCCc----cee
Q 040370          122 RFVLSCGKDSTVKLWEVSS--GRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSN-----EIVIW-DALTA----EKV  189 (228)
Q Consensus       122 ~~l~~~~~d~~i~~wd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~-----~i~i~-d~~~~----~~~  189 (228)
                      +.|+.+.....|.+|++.+  .+...++.   .-+.+..+.++..|+|+++.-....     .+|+| +.+..    .++
T Consensus        29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~---Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v  105 (215)
T PF14761_consen   29 DALFVAASGCKVEVYDLEQEECPLLCTFS---TVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPV  105 (215)
T ss_pred             ceEEEEcCCCEEEEEEcccCCCceeEEEc---chhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcE
Confidence            3444445667899999983  33445554   3467789999999999998754322     45665 22211    111


Q ss_pred             E---------------------EeecCCCCCcEEEEeCC-CCcEEEEecCCCCEEEeee
Q 040370          190 A---------------------KWSSNHIGAPRWIEHSP-AEAAFITCGTDRSVRFWKE  226 (228)
Q Consensus       190 ~---------------------~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~vwd~  226 (228)
                      .                     .....-..++.+++..| .|++++ |+ ++.+.+|.+
T Consensus       106 ~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlV-g~-~~~l~lf~l  162 (215)
T PF14761_consen  106 RVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLV-GC-GNKLVLFTL  162 (215)
T ss_pred             EEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEE-Ec-CCEEEEEEE
Confidence            1                     11112345677888888 555554 43 457888875

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=95.16  E-value=1.1  Score=34.59  Aligned_cols=148  Identities=10%  Similarity=0.068  Sum_probs=81.1

Q ss_pred             eeeEEeCCCCCeEEEEecCCeEEEEeCCCCcee-eEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCe----
Q 040370           68 INQVRYSSTGGMYVTASKDGAIRLWDGVSANCV-RSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGR----  142 (228)
Q Consensus        68 i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~----  142 (228)
                      ...+..++++.+++.+.....++-||  .++.. ....... ...+.++.+.+++..++++ .+|.+.. ....++    
T Consensus       241 f~~v~~~~dG~~~~vg~~G~~~~s~d--~G~~~W~~~~~~~-~~~l~~v~~~~dg~l~l~g-~~G~l~~-S~d~G~~~~~  315 (398)
T PLN00033        241 FSTVNRSPDGDYVAVSSRGNFYLTWE--PGQPYWQPHNRAS-ARRIQNMGWRADGGLWLLT-RGGGLYV-SKGTGLTEED  315 (398)
T ss_pred             eeeEEEcCCCCEEEEECCccEEEecC--CCCcceEEecCCC-ccceeeeeEcCCCCEEEEe-CCceEEE-ecCCCCcccc
Confidence            34455667777666665433333444  23321 2222222 5678899999998877665 5565433 333343    


Q ss_pred             -eEEEEecceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEee--cCCCCCcEEEEeCCCCcEEEEecCCC
Q 040370          143 -LVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWS--SNHIGAPRWIEHSPAEAAFITCGTDR  219 (228)
Q Consensus       143 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~s~~~dg  219 (228)
                       .............+..+.+.+++..+++ |. .|.+..-. ..++.-....  ..-....+.+.|.++++.+++ +.+|
T Consensus       316 ~~f~~~~~~~~~~~l~~v~~~~d~~~~a~-G~-~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~-G~~G  391 (398)
T PLN00033        316 FDFEEADIKSRGFGILDVGYRSKKEAWAA-GG-SGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVL-GNDG  391 (398)
T ss_pred             cceeecccCCCCcceEEEEEcCCCcEEEE-EC-CCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCceEEE-eCCc
Confidence             1222221112234677788877776665 44 37665543 4454433332  223457889999777665555 5678


Q ss_pred             CEEEe
Q 040370          220 SVRFW  224 (228)
Q Consensus       220 ~i~vw  224 (228)
                      .|.-|
T Consensus       392 ~il~~  396 (398)
T PLN00033        392 VLLRY  396 (398)
T ss_pred             EEEEe
Confidence            76554

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=95.08  E-value=0.0036  Score=47.88  Aligned_cols=139  Identities=19%  Similarity=0.243  Sum_probs=89.6

Q ss_pred             eEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEE-EEecCCeEEEEeCCCCcee
Q 040370           22 VRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYV-TASKDGAIRLWDGVSANCV  100 (228)
Q Consensus        22 v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~dg~v~iwd~~~~~~~  100 (228)
                      .....|-|.+.-++.++.+..+..||-.. +.......     .+....++|..++..++ .+-..+.+.+||+.+....
T Consensus        37 pi~~~w~~e~~nlavaca~tiv~~YD~ag-q~~le~n~-----tg~aldm~wDkegdvlavlAek~~piylwd~n~eytq  110 (615)
T KOG2247|consen   37 PIIHRWRPEGHNLAVACANTIVIYYDKAG-QVILELNP-----TGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQ  110 (615)
T ss_pred             cceeeEecCCCceehhhhhhHHHhhhhhc-ceecccCC-----chhHhhhhhccccchhhhhhhcCCCeeechhhhhhHH
Confidence            34456778777788888888898998554 32222222     45567788888776544 5567789999999765322


Q ss_pred             eEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEE
Q 040370          101 RSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLS  170 (228)
Q Consensus       101 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (228)
                      +.-.+.  ...-.-+.|++....++.+...+.+.+++..+.+.+...-.  |.....+.++.+.+..+..
T Consensus       111 qLE~gg--~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gk--h~RRgtq~av~lEd~vil~  176 (615)
T KOG2247|consen  111 QLESGG--TSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGK--HQRRGTQIAVTLEDYVILC  176 (615)
T ss_pred             HHhccC--cchHHHHhhccCCccccccccccceEEEeccchhhhhhhcc--cccceeEEEecccceeeec
Confidence            221121  11122277898888899998999999999876655443322  4555666777666555443

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=95.06  E-value=0.68  Score=36.45  Aligned_cols=145  Identities=9%  Similarity=0.081  Sum_probs=86.6

Q ss_pred             CCCCeEE-EEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCC-------EEEEeeCCCeEEEEEccC-CeeEE
Q 040370           75 STGGMYV-TASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQR-------FVLSCGKDSTVKLWEVSS-GRLVK  145 (228)
Q Consensus        75 ~~~~~l~-~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-------~l~~~~~d~~i~~wd~~~-~~~~~  145 (228)
                      .+..+++ .|.....++-.|++.|+.+..+..+.   .+ -+.|.|+.+       .-+.|-.+..|.-.|.+. |..+.
T Consensus       477 ~dssli~~dg~~~~kLykmDIErGkvveeW~~~d---dv-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~  552 (776)
T COG5167         477 NDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKD---DV-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIK  552 (776)
T ss_pred             CCcceEEecCCCcccceeeecccceeeeEeecCC---cc-eeecCCchhHHhcCccceEEeecccceEEecccccCCcee
Confidence            3444443 55666778888999999999888753   23 567777532       234555666677777764 32222


Q ss_pred             EEecce-eeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEe
Q 040370          146 QYLGAT-HTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFW  224 (228)
Q Consensus       146 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vw  224 (228)
                      ...... ....-.+........|+++++. .|.|++|| |-|....+...+....|..+..+.+|+++++.+.. .+.+-
T Consensus       553 v~esKdY~tKn~Fss~~tTesGyIa~as~-kGDirLyD-Rig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~-yllL~  629 (776)
T COG5167         553 VVESKDYKTKNKFSSGMTTESGYIAAASR-KGDIRLYD-RIGKRAKTALPGLGDAIKHIDVTANGKHILATCKN-YLLLT  629 (776)
T ss_pred             eeeehhccccccccccccccCceEEEecC-CCceeeeh-hhcchhhhcCcccccceeeeEeecCCcEEEEeecc-eEEEE
Confidence            221100 1111122222345567777555 69999999 44544444446777889999999999987766543 44444


Q ss_pred             ee
Q 040370          225 KE  226 (228)
Q Consensus       225 d~  226 (228)
                      |+
T Consensus       630 d~  631 (776)
T COG5167         630 DV  631 (776)
T ss_pred             ec
Confidence            43

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=95.06  E-value=0.048  Score=45.27  Aligned_cols=119  Identities=13%  Similarity=0.211  Sum_probs=70.0

Q ss_pred             cceEEEEEeC---CCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceee-----------EEeCCCCCeEEEEec
Q 040370           20 HNVRSVSFHP---SGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQ-----------VRYSSTGGMYVTASK   85 (228)
Q Consensus        20 ~~v~~~~~~~---~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~-----------~~~~~~~~~l~~~~~   85 (228)
                      ..+.-+.|.|   +..++..+-.++.+++....+...    .....| ...+..           -..+|||+.|++++.
T Consensus       181 s~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~----~l~rsH-s~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~  255 (1283)
T KOG1916|consen  181 SDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR----SLFRSH-SQRVTDMAFFAEGVLKLASLSPDGTVFAWAIS  255 (1283)
T ss_pred             CCcceeeecccccccceeeeccCCCceeEeeechHHH----HHHHhc-CCCcccHHHHhhchhhheeeCCCCcEEEEeec
Confidence            3445566655   677888888899999887765332    111112 222222           236899999999999


Q ss_pred             CCeEEEEeCC-----CCceeeEEecccccceeEEEEECCCCC---------EEEEe-eCCCeEEEEEccCCeeE
Q 040370           86 DGAIRLWDGV-----SANCVRSIVGAHGTAEATSANFTKDQR---------FVLSC-GKDSTVKLWEVSSGRLV  144 (228)
Q Consensus        86 dg~v~iwd~~-----~~~~~~~~~~~~~~~~i~~~~~~~~~~---------~l~~~-~~d~~i~~wd~~~~~~~  144 (228)
                      ||.++.|.+.     .-++....+.|.....+..+ ++.+..         +++++ ..+..+++|.....+++
T Consensus       256 dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~l-c~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl  328 (1283)
T KOG1916|consen  256 DGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWL-CHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL  328 (1283)
T ss_pred             CCccceeeeeeeccccHhhhhccCCCCCCCceeee-eccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence            9999888653     23344555554322233333 443221         23333 34556888887665555

>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.98  E-value=1.7  Score=37.91  Aligned_cols=36  Identities=17%  Similarity=0.294  Sum_probs=29.5

Q ss_pred             cCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceE
Q 040370           18 DTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQC   53 (228)
Q Consensus        18 ~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~   53 (228)
                      -......++|+|....+|.++..|.|+++-...-+.
T Consensus        34 ~~~~~~~~afD~~q~llai~t~tg~i~~yg~~~ve~   69 (993)
T KOG1983|consen   34 FPSTPSALAFDPTQGLLAIGTRTGAIKIYGQPGVEF   69 (993)
T ss_pred             CCCCCcceeeccccceEEEEEecccEEEecccceEE
Confidence            345677899999999999999999999998665443

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=94.95  E-value=1.9  Score=36.14  Aligned_cols=79  Identities=18%  Similarity=0.258  Sum_probs=53.4

Q ss_pred             CcceEEEEEeCCCCEEEEecCCCeEEEEEccc----------ceEEe---eec----cceeeeccceeeEEeCCC---CC
Q 040370           19 THNVRSVSFHPSGDFLLAGTDHPIAHLYDVNT----------FQCYL---SAN----VPEISVNGAINQVRYSST---GG   78 (228)
Q Consensus        19 ~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~----------~~~~~---~~~----~~~~~~~~~i~~~~~~~~---~~   78 (228)
                      .-.|..+.++|+|.++|..+..|.. |-.+..          ++...   ...    ....+....|..+.|+|.   +.
T Consensus        84 ~f~v~~i~~n~~g~~lal~G~~~v~-V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~  162 (717)
T PF10168_consen   84 LFEVHQISLNPTGSLLALVGPRGVV-VLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDS  162 (717)
T ss_pred             ceeEEEEEECCCCCEEEEEcCCcEE-EEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCC
Confidence            4578999999999999988876644 444421          11111   110    011122457889999996   57


Q ss_pred             eEEEEecCCeEEEEeCCCCc
Q 040370           79 MYVTASKDGAIRLWDGVSAN   98 (228)
Q Consensus        79 ~l~~~~~dg~v~iwd~~~~~   98 (228)
                      .|+.-..|+.+++||+...+
T Consensus       163 ~l~vLtsdn~lR~y~~~~~~  182 (717)
T PF10168_consen  163 HLVVLTSDNTLRLYDISDPQ  182 (717)
T ss_pred             eEEEEecCCEEEEEecCCCC
Confidence            89999999999999997644

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=94.88  E-value=0.19  Score=40.54  Aligned_cols=76  Identities=16%  Similarity=0.182  Sum_probs=45.0

Q ss_pred             CCCCEEEEecCCCeEEEEEccc----ceEEeeecccee------------------eeccceeeEEeCC----CCCeEEE
Q 040370           29 PSGDFLLAGTDHPIAHLYDVNT----FQCYLSANVPEI------------------SVNGAINQVRYSS----TGGMYVT   82 (228)
Q Consensus        29 ~~~~~l~~~~~d~~i~vw~~~~----~~~~~~~~~~~~------------------~~~~~i~~~~~~~----~~~~l~~   82 (228)
                      ++...++.+..||.+.......    +...........                  ........++.++    +..++++
T Consensus       156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t  235 (547)
T PF11715_consen  156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT  235 (547)
T ss_dssp             -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred             cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence            4677888888899888887664    111111100000                  0023345566665    6779999


Q ss_pred             EecCCeEEEEeCCCCceeeEEe
Q 040370           83 ASKDGAIRLWDGVSANCVRSIV  104 (228)
Q Consensus        83 ~~~dg~v~iwd~~~~~~~~~~~  104 (228)
                      .+.|+.+|+||+.+++++....
T Consensus       236 l~~D~~LRiW~l~t~~~~~~~~  257 (547)
T PF11715_consen  236 LSRDHTLRIWSLETGQCLATID  257 (547)
T ss_dssp             EETTSEEEEEETTTTCEEEEEE
T ss_pred             EeCCCeEEEEECCCCeEEEEec
Confidence            9999999999999999866553

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=94.87  E-value=0.57  Score=29.75  Aligned_cols=114  Identities=6%  Similarity=0.034  Sum_probs=64.9

Q ss_pred             EEEEeCCCCEEEEecCCCeEEEEEcccceEEee---eccceeeeccceeeEEeCC-----CCCeEEEEecCCeEEEEeCC
Q 040370           24 SVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLS---ANVPEISVNGAINQVRYSS-----TGGMYVTASKDGAIRLWDGV   95 (228)
Q Consensus        24 ~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~---~~~~~~~~~~~i~~~~~~~-----~~~~l~~~~~dg~v~iwd~~   95 (228)
                      .-.|......|++++.-|.|.|++.........   ...........|++++-.+     +...|+.|+. ..+..||+.
T Consensus         3 iGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt~-t~llaYDV~   81 (136)
T PF14781_consen    3 IGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAYDVE   81 (136)
T ss_pred             EEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEecc-ceEEEEEcc
Confidence            345666667888888999999998764321110   0111112256677775433     2446666664 679999998


Q ss_pred             CCceeeEEecccccceeEEEEEC---C-CCCEEEEeeCCCeEEEEEccCCe
Q 040370           96 SANCVRSIVGAHGTAEATSANFT---K-DQRFVLSCGKDSTVKLWEVSSGR  142 (228)
Q Consensus        96 ~~~~~~~~~~~~~~~~i~~~~~~---~-~~~~l~~~~~d~~i~~wd~~~~~  142 (228)
                      +...+..-..   ...+.++.+-   . +...++.| .+-.|.-||..-.+
T Consensus        82 ~N~d~Fyke~---~DGvn~i~~g~~~~~~~~l~ivG-Gncsi~Gfd~~G~e  128 (136)
T PF14781_consen   82 NNSDLFYKEV---PDGVNAIVIGKLGDIPSPLVIVG-GNCSIQGFDYEGNE  128 (136)
T ss_pred             cCchhhhhhC---ccceeEEEEEecCCCCCcEEEEC-ceEEEEEeCCCCcE
Confidence            8765543333   3445555543   2 23444444 45566667654433

>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]

Probab=94.86  E-value=2.3  Score=36.64  Aligned_cols=177  Identities=7%  Similarity=-0.004  Sum_probs=91.0

Q ss_pred             eEEEEEcccceEEeeeccceeeeccceeeEEeCCCCC--eEEEEe-----------cCCeEEEEeCC-CCceeeEEeccc
Q 040370           42 IAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGG--MYVTAS-----------KDGAIRLWDGV-SANCVRSIVGAH  107 (228)
Q Consensus        42 ~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~l~~~~-----------~dg~v~iwd~~-~~~~~~~~~~~~  107 (228)
                      .|++.|..+++.+...........-.+..+.|+....  ++++|.           .+|.++.|++- +++.+.-+..  
T Consensus       854 ~I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh~--  931 (1205)
T KOG1898|consen  854 SIRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLHK--  931 (1205)
T ss_pred             eEEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeeeec--
Confidence            4777887777765555444332233566677765433  333332           23456666653 3332222211  


Q ss_pred             ccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcC-Cc
Q 040370          108 GTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDAL-TA  186 (228)
Q Consensus       108 ~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~-~~  186 (228)
                      ..-+-.-.+..|-..++++| ....+++||+...+++++.+....+..+..+.+  .+..++++...++ +.++-.+ ..
T Consensus       932 T~~~~~v~Ai~~f~~~~Lag-vG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt--~~~RI~VgD~qeS-V~~~~y~~~~ 1007 (1205)
T KOG1898|consen  932 TEIPGPVGAICPFQGRVLAG-VGRFLRLYDLGKKKLLRKCELKFIPNRISSIQT--YGARIVVGDIQES-VHFVRYRRED 1007 (1205)
T ss_pred             cCCCccceEEeccCCEEEEe-cccEEEEeeCChHHHHhhhhhccCceEEEEEee--cceEEEEeeccce-EEEEEEecCC
Confidence            12222234556656665555 457899999988777766654333444544443  4566777666544 3333332 33


Q ss_pred             ceeEEee-cCCCCCcEEEEeCCCCcEEEEecCCCCEEEee
Q 040370          187 EKVAKWS-SNHIGAPRWIEHSPAEAAFITCGTDRSVRFWK  225 (228)
Q Consensus       187 ~~~~~~~-~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd  225 (228)
                      +.+..+. ..-...|+++.+- |...+|.+..=|.+.+-+
T Consensus      1008 n~l~~fadD~~pR~Vt~~~~l-D~~tvagaDrfGNi~~vR 1046 (1205)
T KOG1898|consen 1008 NQLIVFADDPVPRHVTALELL-DYDTVAGADRFGNIAVVR 1046 (1205)
T ss_pred             CeEEEEeCCCccceeeEEEEe-cCCceeeccccCcEEEEE
Confidence            3343332 1223345555443 444566666656555443

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=94.81  E-value=2.2  Score=36.23  Aligned_cols=163  Identities=12%  Similarity=0.178  Sum_probs=96.4

Q ss_pred             ecCcceEEEEEe---C----CCCEEEEecCCCeEEEEEcccce---------------EEeeeccceeeeccceeeEEeC
Q 040370           17 QDTHNVRSVSFH---P----SGDFLLAGTDHPIAHLYDVNTFQ---------------CYLSANVPEISVNGAINQVRYS   74 (228)
Q Consensus        17 ~~~~~v~~~~~~---~----~~~~l~~~~~d~~i~vw~~~~~~---------------~~~~~~~~~~~~~~~i~~~~~~   74 (228)
                      ....+|..|+|.   .    ...+|++=. ...+.|+...-.+               ++..+...... ..+...++|+
T Consensus        77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vrt-~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tg-g~~~aDv~Fn  154 (765)
T PF10214_consen   77 DDGSPIKQIKFATLSESFDEKSRWLAVRT-ETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTG-GFPHADVAFN  154 (765)
T ss_pred             CCCCCeeEEEecccccccCCcCcEEEEEc-CCEEEEEEcccccccccccCCccccccceeEEechhhcC-CCccceEEec
Confidence            457899999998   2    223555544 4566777722111               11222211111 4467889999


Q ss_pred             C-CCCeEEEEecCCeEEEEeCCCCc----eeeEEecc---------cccceeEEEEECCCCCEEEEeeCCCeEEEEEccC
Q 040370           75 S-TGGMYVTASKDGAIRLWDGVSAN----CVRSIVGA---------HGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSS  140 (228)
Q Consensus        75 ~-~~~~l~~~~~dg~v~iwd~~~~~----~~~~~~~~---------~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~  140 (228)
                      | +.+.||.....|...||++....    ........         ........+.|.++.+.|+.++. ..+.++|+++
T Consensus       155 P~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r-~~l~~~d~~~  233 (765)
T PF10214_consen  155 PWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNR-SKLMLIDFES  233 (765)
T ss_pred             cCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcC-CceEEEECCC
Confidence            9 56689999999999999992111    11111111         11123347888888788887765 4689999987


Q ss_pred             CeeEEEEecceeeeeeeEEEECCC--CcEEEEeeCCCCeEEEEEcCC
Q 040370          141 GRLVKQYLGATHTQLRFQAVFNDT--EEFVLSIDEPSNEIVIWDALT  185 (228)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~d~~i~i~d~~~  185 (228)
                      ......+........+..+.-++.  +..++. .+  ..|...|+..
T Consensus       234 ~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiL-Ts--~eiiw~~~~~  277 (765)
T PF10214_consen  234 NWQTEYLVTAKTWSWILDVKRSPDNPSHVFIL-TS--KEIIWLDVKS  277 (765)
T ss_pred             CCccchhccCCChhheeeEEecCCccceEEEE-ec--CeEEEEEccC
Confidence            765332333335566777777776  223333 22  6677778766

These proteins are found in fungi.

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=94.76  E-value=0.21  Score=24.26  Aligned_cols=32  Identities=16%  Similarity=0.152  Sum_probs=26.1

Q ss_pred             CCCcEEEEeeCCCCeEEEEEcCCcceeEEeec
Q 040370          163 DTEEFVLSIDEPSNEIVIWDALTAEKVAKWSS  194 (228)
Q Consensus       163 ~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~  194 (228)
                      |+++.++++...++.|.++|..+++....+..
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v   32 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV   32 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence            56788888887789999999988888877743

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=94.37  E-value=1.9  Score=33.43  Aligned_cols=149  Identities=10%  Similarity=0.138  Sum_probs=79.6

Q ss_pred             eEEEEEeCCCCEEEEecCCCeEEEEEcccceEE-eeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCCCc--
Q 040370           22 VRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCY-LSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSAN--   98 (228)
Q Consensus        22 v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~--   98 (228)
                      ...+..++++.+++.+..-..++-||  .+... .......   ...+..+.|.+++..++++ .+|.+.. ....++  
T Consensus       241 f~~v~~~~dG~~~~vg~~G~~~~s~d--~G~~~W~~~~~~~---~~~l~~v~~~~dg~l~l~g-~~G~l~~-S~d~G~~~  313 (398)
T PLN00033        241 FSTVNRSPDGDYVAVSSRGNFYLTWE--PGQPYWQPHNRAS---ARRIQNMGWRADGGLWLLT-RGGGLYV-SKGTGLTE  313 (398)
T ss_pred             eeeEEEcCCCCEEEEECCccEEEecC--CCCcceEEecCCC---ccceeeeeEcCCCCEEEEe-CCceEEE-ecCCCCcc
Confidence            44456667777777666433222233  23221 2222221   5678999999998877665 5566544 333443  


Q ss_pred             ---eeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEe-cceeeeeeeEEEECCCCcEEEEeeCC
Q 040370           99 ---CVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYL-GATHTQLRFQAVFNDTEEFVLSIDEP  174 (228)
Q Consensus        99 ---~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (228)
                         .............+.++.|.+++..+++| ..|.+..-. ..++.-.... ........+.+.|.++++-.++ |. 
T Consensus       314 ~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G-~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~-G~-  389 (398)
T PLN00033        314 EDFDFEEADIKSRGFGILDVGYRSKKEAWAAG-GSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVL-GN-  389 (398)
T ss_pred             cccceeecccCCCCcceEEEEEcCCCcEEEEE-CCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCceEEE-eC-
Confidence               22222222123458889999877755555 667655543 4444323222 1112344567777776665555 44 


Q ss_pred             CCeEEEE
Q 040370          175 SNEIVIW  181 (228)
Q Consensus       175 d~~i~i~  181 (228)
                      +|.|.-|
T Consensus       390 ~G~il~~  396 (398)
T PLN00033        390 DGVLLRY  396 (398)
T ss_pred             CcEEEEe
Confidence            4776654

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=94.34  E-value=2  Score=33.77  Aligned_cols=109  Identities=11%  Similarity=0.101  Sum_probs=60.5

Q ss_pred             cceeeEEeCCCCCeEEEEecCCeEEEEeCCCCcee--eEEe---cccccceeEEEEECCCC------CEEEEee------
Q 040370           66 GAINQVRYSSTGGMYVTASKDGAIRLWDGVSANCV--RSIV---GAHGTAEATSANFTKDQ------RFVLSCG------  128 (228)
Q Consensus        66 ~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~--~~~~---~~~~~~~i~~~~~~~~~------~~l~~~~------  128 (228)
                      ...+.|+|.|++++|++--..|.|++++..++...  ..+.   ..........++++|+-      .+|+...      
T Consensus        30 ~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~~~  109 (454)
T TIGR03606        30 NKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKNGD  109 (454)
T ss_pred             CCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccCCC
Confidence            34688999999987776654699999986554321  1111   11125667899999873      2444332      


Q ss_pred             ----CCCeEEEEEccCC--e---eEEEEecc--eeeeeeeEEEECCCCcEEEEeeCC
Q 040370          129 ----KDSTVKLWEVSSG--R---LVKQYLGA--THTQLRFQAVFNDTEEFVLSIDEP  174 (228)
Q Consensus       129 ----~d~~i~~wd~~~~--~---~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~  174 (228)
                          ....|.-|.+...  .   ....+...  ........+.|.|++...+++|..
T Consensus       110 ~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD~  166 (454)
T TIGR03606       110 KELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGEQ  166 (454)
T ss_pred             CCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECCC
Confidence                1234544554321  1   11111110  112234567799999877777653

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=94.29  E-value=3  Score=35.49  Aligned_cols=119  Identities=12%  Similarity=0.061  Sum_probs=75.7

Q ss_pred             CcceEEEEEeC-CCCEEEEecCCCeEEEEEcccceE-----Eeeeccceeee------ccceeeEEeCCCCCeEEEEecC
Q 040370           19 THNVRSVSFHP-SGDFLLAGTDHPIAHLYDVNTFQC-----YLSANVPEISV------NGAINQVRYSSTGGMYVTASKD   86 (228)
Q Consensus        19 ~~~v~~~~~~~-~~~~l~~~~~d~~i~vw~~~~~~~-----~~~~~~~~~~~------~~~i~~~~~~~~~~~l~~~~~d   86 (228)
                      ..+...++|+| +...||+....|.-.||++.....     ........++.      ...-..+.|.++.+.|+.++. 
T Consensus       145 g~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r-  223 (765)
T PF10214_consen  145 GFPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNR-  223 (765)
T ss_pred             CCccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcC-
Confidence            34788899999 667999999999999999922111     11010000110      122346789888777887765 


Q ss_pred             CeEEEEeCCCCceeeEEecccccceeEEEEECCC--CCEEEEeeCCCeEEEEEccC
Q 040370           87 GAIRLWDGVSANCVRSIVGAHGTAEATSANFTKD--QRFVLSCGKDSTVKLWEVSS  140 (228)
Q Consensus        87 g~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~d~~i~~wd~~~  140 (228)
                      ..+.++|+++......+........|..+.-+|.  +..++-.  ...|...|+..
T Consensus       224 ~~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLT--s~eiiw~~~~~  277 (765)
T PF10214_consen  224 SKLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILT--SKEIIWLDVKS  277 (765)
T ss_pred             CceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEEe--cCeEEEEEccC
Confidence            5788999987765332333333677888888886  2333332  36788888876

These proteins are found in fungi.

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=94.14  E-value=1.9  Score=32.54  Aligned_cols=106  Identities=15%  Similarity=0.215  Sum_probs=56.1

Q ss_pred             ceeeEEeCCCCCeEEEEecCCeEEEEeCCCCce---eeEEe--cccccceeEEEEECCC---CCEEEEeeC-C-------
Q 040370           67 AINQVRYSSTGGMYVTASKDGAIRLWDGVSANC---VRSIV--GAHGTAEATSANFTKD---QRFVLSCGK-D-------  130 (228)
Q Consensus        67 ~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~---~~~~~--~~~~~~~i~~~~~~~~---~~~l~~~~~-d-------  130 (228)
                      ..+.|+|.|+|++++ +...|.|++++ ..+..   +..+.  ..........++++|+   ..+|+.... .       
T Consensus         3 ~P~~~a~~pdG~l~v-~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~   80 (331)
T PF07995_consen    3 NPRSMAFLPDGRLLV-AERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN   80 (331)
T ss_dssp             SEEEEEEETTSCEEE-EETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred             CceEEEEeCCCcEEE-EeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence            357899999987665 45699999999 44443   22221  1123557799999994   334433332 1       


Q ss_pred             -CeEEEEEccCC-------eeEE-EEec-ceeeeeeeEEEECCCCcEEEEeeCC
Q 040370          131 -STVKLWEVSSG-------RLVK-QYLG-ATHTQLRFQAVFNDTEEFVLSIDEP  174 (228)
Q Consensus       131 -~~i~~wd~~~~-------~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  174 (228)
                       ..|.-|....+       +.+. .+.. .........+.|.|++...++.|..
T Consensus        81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~  134 (331)
T PF07995_consen   81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDG  134 (331)
T ss_dssp             EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-T
T ss_pred             ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCC
Confidence             23444544433       1111 1111 0122344568899999777776653

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>TIGR03032 conserved hypothetical protein TIGR03032

Probab=94.12  E-value=1.7  Score=32.12  Aligned_cols=88  Identities=13%  Similarity=0.114  Sum_probs=57.1

Q ss_pred             EEeCCCCCeEEEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCC--------------------
Q 040370           71 VRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKD--------------------  130 (228)
Q Consensus        71 ~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d--------------------  130 (228)
                      -.|+ +|++.++=+..|.+.-+|.++|+.......   ++....++|.  |.++++|-..                    
T Consensus       208 PRWh-dgrLwvldsgtGev~~vD~~~G~~e~Va~v---pG~~rGL~f~--G~llvVgmSk~R~~~~f~glpl~~~l~~~~  281 (335)
T TIGR03032       208 PRWY-QGKLWLLNSGRGELGYVDPQAGKFQPVAFL---PGFTRGLAFA--GDFAFVGLSKLRESRVFGGLPIEERLDALG  281 (335)
T ss_pred             CcEe-CCeEEEEECCCCEEEEEcCCCCcEEEEEEC---CCCCccccee--CCEEEEEeccccCCCCcCCCchhhhhhhhc
Confidence            3455 677788888889999999888876555444   4456778887  7776655321                    


Q ss_pred             CeEEEEEccCCeeEEEEecceeeeeeeEEEECCC
Q 040370          131 STVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDT  164 (228)
Q Consensus       131 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (228)
                      .-|.+.|+++|..+..++-...-..++.+..-|.
T Consensus       282 CGv~vidl~tG~vv~~l~feg~v~EifdV~vLPg  315 (335)
T TIGR03032       282 CGVAVIDLNSGDVVHWLRFEGVIEEIYDVAVLPG  315 (335)
T ss_pred             ccEEEEECCCCCEEEEEEeCCceeEEEEEEEecC
Confidence            2366777777777666654434445555555554

This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=94.12  E-value=3  Score=34.84  Aligned_cols=69  Identities=14%  Similarity=0.251  Sum_probs=47.2

Q ss_pred             cCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEe
Q 040370           18 DTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWD   93 (228)
Q Consensus        18 ~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd   93 (228)
                      ....++++.-+|.+..++.+..||.|++|+............     ..+-..+.|...|  ++++..|..+.-|.
T Consensus        13 ~~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~~~-----~~p~~nlv~tnhg--l~~~tsdrr~la~~   81 (1636)
T KOG3616|consen   13 EDEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKICEE-----AKPKENLVFTNHG--LVTATSDRRALAWK   81 (1636)
T ss_pred             ccceeeeeeecCCCceEEEEecCCcEEEEeecccchhhhhhh-----cCCccceeeeccc--eEEEeccchhheee
Confidence            345678888899999999999999999999876443221111     2233445565555  66666777777775

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=94.05  E-value=0.88  Score=30.59  Aligned_cols=30  Identities=7%  Similarity=0.072  Sum_probs=24.5

Q ss_pred             CCCcEEEEeCCCC------cEEEEecCCCCEEEeee
Q 040370          197 IGAPRWIEHSPAE------AAFITCGTDRSVRFWKE  226 (228)
Q Consensus       197 ~~~v~~~~~~~~~------~~l~s~~~dg~i~vwd~  226 (228)
                      ...+.+++|||.|      .+|++...+|.|.||..
T Consensus        85 ~~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~  120 (173)
T PF12657_consen   85 SSQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGP  120 (173)
T ss_pred             cccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEec
Confidence            3478999999943      47888999999999964

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=93.81  E-value=2.6  Score=33.16  Aligned_cols=61  Identities=8%  Similarity=0.075  Sum_probs=39.8

Q ss_pred             ecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeecccee---eeccceeeEEeCCCC
Q 040370           17 QDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEI---SVNGAINQVRYSSTG   77 (228)
Q Consensus        17 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~   77 (228)
                      ..-.....|+|.|++++|++--..|.|++++..++........+..   .-.+....|+++|+-
T Consensus        27 ~GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF   90 (454)
T TIGR03606        27 SGLNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF   90 (454)
T ss_pred             CCCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence            3456788999999998777665469999998665432222111111   015678999999874

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=93.78  E-value=1.5  Score=30.32  Aligned_cols=191  Identities=13%  Similarity=0.100  Sum_probs=98.2

Q ss_pred             eEEEeecCcce--EEEEEeCCCCEEEEecC--CCeEEEEEcccceEEeeeccce-eeeccceeeEEeCCCCCeE-EEEec
Q 040370           12 AFRVIQDTHNV--RSVSFHPSGDFLLAGTD--HPIAHLYDVNTFQCYLSANVPE-ISVNGAINQVRYSSTGGMY-VTASK   85 (228)
Q Consensus        12 ~~~~~~~~~~v--~~~~~~~~~~~l~~~~~--d~~i~vw~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l-~~~~~   85 (228)
                      +.+...|...-  ..+.+. ++.++.+.+.  ...|++||+.+++......... .-....++.+     +..+ .-.-.
T Consensus        36 vi~~yphDs~sfTQGL~~~-~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~-----gd~~y~LTw~  109 (262)
T COG3823          36 VIRTYPHDSTSFTQGLEYL-DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKL-----GDYFYQLTWK  109 (262)
T ss_pred             EEEeccCchhhhhcceeee-CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeec-----cceEEEEEec
Confidence            44444554432  234443 4555555543  4579999999988766555431 1111222211     2222 22336


Q ss_pred             CCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeE---EEEC
Q 040370           86 DGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQ---AVFN  162 (228)
Q Consensus        86 dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~---~~~~  162 (228)
                      +|.-..+|.++.+.+..+..   .+.-..++.  |++.|+.++...+++.-|.++.....+........++..   +.|-
T Consensus       110 egvaf~~d~~t~~~lg~~~y---~GeGWgLt~--d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V  184 (262)
T COG3823         110 EGVAFKYDADTLEELGRFSY---EGEGWGLTS--DDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV  184 (262)
T ss_pred             cceeEEEChHHhhhhccccc---CCcceeeec--CCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee
Confidence            78888999998888877766   334455543  455577776666777777765443333322111222211   1111


Q ss_pred             CCCcEEEEeeCCCCeEEEEEcCCcceeEEe-----------ecCCCCCcEEEEeCCCC-cEEEEe
Q 040370          163 DTEEFVLSIDEPSNEIVIWDALTAEKVAKW-----------SSNHIGAPRWIEHSPAE-AAFITC  215 (228)
Q Consensus       163 ~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~-----------~~~~~~~v~~~~~~~~~-~~l~s~  215 (228)
                       +|...+- --.+..|...|..+|+.+..+           ...+..-.+.+++.|++ ++++||
T Consensus       185 -dG~lyAN-Vw~t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG  247 (262)
T COG3823         185 -DGELYAN-VWQTTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG  247 (262)
T ss_pred             -ccEEEEe-eeeecceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence             1221111 111234444455555544332           12455567889999977 555555

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=93.60  E-value=3  Score=33.17  Aligned_cols=78  Identities=12%  Similarity=0.135  Sum_probs=51.7

Q ss_pred             ceeeEEeCCCCCeEEEEecCCeEEEEeC---------CCCceee---------EEecccccceeEEEEECCCC---CEEE
Q 040370           67 AINQVRYSSTGGMYVTASKDGAIRLWDG---------VSANCVR---------SIVGAHGTAEATSANFTKDQ---RFVL  125 (228)
Q Consensus        67 ~i~~~~~~~~~~~l~~~~~dg~v~iwd~---------~~~~~~~---------~~~~~~~~~~i~~~~~~~~~---~~l~  125 (228)
                      .|..+..++.|..++-++.+|.+.++=.         +.++...         .+......-.+.-.+|+|+.   ..|.
T Consensus       105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~  184 (741)
T KOG4460|consen  105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLV  184 (741)
T ss_pred             EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEE
Confidence            4667788999999998889997766531         2232111         11111123456678899965   5777


Q ss_pred             EeeCCCeEEEEEccCCeeE
Q 040370          126 SCGKDSTVKLWEVSSGRLV  144 (228)
Q Consensus       126 ~~~~d~~i~~wd~~~~~~~  144 (228)
                      .-+.|..||+||+.....+
T Consensus       185 iL~sdnviRiy~lS~~tel  203 (741)
T KOG4460|consen  185 LLTSDNVIRIYSLSEPTEL  203 (741)
T ss_pred             EEecCcEEEEEecCCcchh
Confidence            7888999999999765544

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=93.50  E-value=0.43  Score=23.11  Aligned_cols=32  Identities=9%  Similarity=0.182  Sum_probs=23.7

Q ss_pred             CCCCeEEEEe-cCCeEEEEeCCCCceeeEEecc
Q 040370           75 STGGMYVTAS-KDGAIRLWDGVSANCVRSIVGA  106 (228)
Q Consensus        75 ~~~~~l~~~~-~dg~v~iwd~~~~~~~~~~~~~  106 (228)
                      |+++.++++. .++.|.++|..+++....+...
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg   33 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVG   33 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECC
Confidence            5666565544 5789999999888887777663

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>PLN02193 nitrile-specifier protein

Probab=93.25  E-value=3.5  Score=32.82  Aligned_cols=112  Identities=10%  Similarity=0.095  Sum_probs=53.8

Q ss_pred             CCCEEEEecCC-----CeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCC-----eEEEEeCCCCce
Q 040370           30 SGDFLLAGTDH-----PIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDG-----AIRLWDGVSANC   99 (228)
Q Consensus        30 ~~~~l~~~~~d-----~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-----~v~iwd~~~~~~   99 (228)
                      ++..++.|+.+     ..+.++|+.+.+-..............-.+++. -++++++.|+.++     .+..||+.+.+-
T Consensus       228 ~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~-~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W  306 (470)
T PLN02193        228 GSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAA-DEENVYVFGGVSATARLKTLDSYNIVDKKW  306 (470)
T ss_pred             CCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEE-ECCEEEEECCCCCCCCcceEEEEECCCCEE
Confidence            45555666654     357788888765433221100000111112222 2456666666543     467788776543


Q ss_pred             eeEEec---ccccceeEEEEECCCCCEEEEeeCC----CeEEEEEccCCeeE
Q 040370          100 VRSIVG---AHGTAEATSANFTKDQRFVLSCGKD----STVKLWEVSSGRLV  144 (228)
Q Consensus       100 ~~~~~~---~~~~~~i~~~~~~~~~~~l~~~~~d----~~i~~wd~~~~~~~  144 (228)
                      ...-..   ...... ..++. -+++.++.++.+    ..+.+||+.+.+..
T Consensus       307 ~~~~~~~~~~~~R~~-~~~~~-~~gkiyviGG~~g~~~~dv~~yD~~t~~W~  356 (470)
T PLN02193        307 FHCSTPGDSFSIRGG-AGLEV-VQGKVWVVYGFNGCEVDDVHYYDPVQDKWT  356 (470)
T ss_pred             EeCCCCCCCCCCCCC-cEEEE-ECCcEEEEECCCCCccCceEEEECCCCEEE
Confidence            221100   000111 11221 246666666655    45899999886654

>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast)

Probab=93.18  E-value=4.2  Score=33.56  Aligned_cols=169  Identities=10%  Similarity=0.098  Sum_probs=88.8

Q ss_pred             cCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCC------CCeEEEEec-C---C
Q 040370           18 DTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSST------GGMYVTASK-D---G   87 (228)
Q Consensus        18 ~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~------~~~l~~~~~-d---g   87 (228)
                      -.+.|..+.|.++++.+++...+|.|.+||...+...........+ ...+.-=.|-++      ..++++-+. +   -
T Consensus       128 l~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~-~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k~  206 (670)
T PF10395_consen  128 LDDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKS-SINVSYSKFVNDFELENGKDLLLTVSQLSNSKL  206 (670)
T ss_pred             cccceEEEEEecCCCEEEEEEcCCcEEEEecccccccccccccccc-ccceehhhhhcccccccCCceEEEEEEcCCCcE
Confidence            4678999999999999999999999999999433322211111111 111111123221      234444443 2   3


Q ss_pred             eEEEEeCC-CCceeeEEecc-cccceeEEEEECC-CCCEEEEeeCCCeEEEEEccCCeeEEEEecce---ee-eeeeEEE
Q 040370           88 AIRLWDGV-SANCVRSIVGA-HGTAEATSANFTK-DQRFVLSCGKDSTVKLWEVSSGRLVKQYLGAT---HT-QLRFQAV  160 (228)
Q Consensus        88 ~v~iwd~~-~~~~~~~~~~~-~~~~~i~~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~---~~-~~~~~~~  160 (228)
                      ..+++.+. .......+... ..........|.. +|....-  .+++|.+|++.+.+...++....   .. ....++.
T Consensus       207 ~ykL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l--~~~~i~~ysip~f~~~~tI~l~~ii~~~~~~~vSl~  284 (670)
T PF10395_consen  207 SYKLISLSNESSSIFELSSTILENFGLEDSKFCYQFGKLYQL--SKKTISSYSIPNFQIQKTISLPSIIDKESDDLVSLK  284 (670)
T ss_pred             EEEEEEeccCCcceEEeehheeccCCcccceEEEeCCEEEEE--eCCEEEEEEcCCceEEEEEEechhhccccccceEee
Confidence            46777771 22223333200 0011222223333 4443322  67899999998877766665331   11 1223333


Q ss_pred             ECCCCcEEEEeeCCCCeEEEEEcCCcceeEEe
Q 040370          161 FNDTEEFVLSIDEPSNEIVIWDALTAEKVAKW  192 (228)
Q Consensus       161 ~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~  192 (228)
                       .|..+.++.+.  ++.|++.|+.-...+.++
T Consensus       285 -~~s~nRvLLs~--~nkIyLld~~~~siLse~  313 (670)
T PF10395_consen  285 -PPSPNRVLLSV--NNKIYLLDLKFESILSEF  313 (670)
T ss_pred             -cCCCCeEEEEc--CCEEEEEeehhhhhhhhh
Confidence             23444444433  489999998765555544

It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].

>PLN02193 nitrile-specifier protein

Probab=92.94  E-value=3.9  Score=32.55  Aligned_cols=140  Identities=7%  Similarity=-0.019  Sum_probs=62.4

Q ss_pred             CCCeEEEEecC-----CeEEEEeCCCCceeeEEecc--cccceeEEEEECCCCCEEEEeeCCC-----eEEEEEccCCee
Q 040370           76 TGGMYVTASKD-----GAIRLWDGVSANCVRSIVGA--HGTAEATSANFTKDQRFVLSCGKDS-----TVKLWEVSSGRL  143 (228)
Q Consensus        76 ~~~~l~~~~~d-----g~v~iwd~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~d~-----~i~~wd~~~~~~  143 (228)
                      ++.+.+.|+.+     ..+..+|+.+.+-...-...  .....-.+++. -+++.++.|+.++     .+..||+.+.+.
T Consensus       228 ~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~-~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W  306 (470)
T PLN02193        228 GSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAA-DEENVYVFGGVSATARLKTLDSYNIVDKKW  306 (470)
T ss_pred             CCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEE-ECCEEEEECCCCCCCCcceEEEEECCCCEE
Confidence            45566666654     35888898876533221110  00111122222 2456666776543     467888877654


Q ss_pred             EEEEec--ceeeeeeeEEEECCCCcEEEEeeCC---CCeEEEEEcCCcceeEEeecC---CCCCcEEEEeCCCCcEEEEe
Q 040370          144 VKQYLG--ATHTQLRFQAVFNDTEEFVLSIDEP---SNEIVIWDALTAEKVAKWSSN---HIGAPRWIEHSPAEAAFITC  215 (228)
Q Consensus       144 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~s~  215 (228)
                      ...-..  .........+.. -++...+..|..   -..+.+||+.+.+-......+   ......++ ..-++++++.|
T Consensus       307 ~~~~~~~~~~~~R~~~~~~~-~~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~-~~~~~~iyv~G  384 (470)
T PLN02193        307 FHCSTPGDSFSIRGGAGLEV-VQGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFAS-AAVGKHIVIFG  384 (470)
T ss_pred             EeCCCCCCCCCCCCCcEEEE-ECCcEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEE-EEECCEEEEEC
Confidence            321110  000000111111 134444444431   146889998776533221100   01111111 22256778888


Q ss_pred             cCC
Q 040370          216 GTD  218 (228)
Q Consensus       216 ~~d  218 (228)
                      +.+
T Consensus       385 G~~  387 (470)
T PLN02193        385 GEI  387 (470)
T ss_pred             Ccc
Confidence            853

>PLN02153 epithiospecifier protein

Probab=92.84  E-value=3.2  Score=31.34  Aligned_cols=112  Identities=13%  Similarity=0.173  Sum_probs=53.4

Q ss_pred             CCCEEEEecCC-------CeEEEEEcccceEEeeeccceeeecc--ceeeEEeCCCCCeEEEEecC-----CeEEEEeCC
Q 040370           30 SGDFLLAGTDH-------PIAHLYDVNTFQCYLSANVPEISVNG--AINQVRYSSTGGMYVTASKD-----GAIRLWDGV   95 (228)
Q Consensus        30 ~~~~l~~~~~d-------~~i~vw~~~~~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~l~~~~~d-----g~v~iwd~~   95 (228)
                      +++.++.|+.+       ..+.+||+.+.+-.............  ....+.+  ++++++.|+.+     ..+.+||+.
T Consensus        32 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~  109 (341)
T PLN02153         32 GDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAV--GTKLYIFGGRDEKREFSDFYSYDTV  109 (341)
T ss_pred             CCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEE--CCEEEEECCCCCCCccCcEEEEECC
Confidence            45666666653       35778888776533221111000000  1122233  45666676643     357888987


Q ss_pred             CCceeeEEecc----cccceeEEEEECCCCCEEEEeeCC-----------CeEEEEEccCCeeE
Q 040370           96 SANCVRSIVGA----HGTAEATSANFTKDQRFVLSCGKD-----------STVKLWEVSSGRLV  144 (228)
Q Consensus        96 ~~~~~~~~~~~----~~~~~i~~~~~~~~~~~l~~~~~d-----------~~i~~wd~~~~~~~  144 (228)
                      +.+-...-...    .....-.+++. -+++.++.|+.+           ..+.+||+++.+..
T Consensus       110 t~~W~~~~~~~~~~~p~~R~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~  172 (341)
T PLN02153        110 KNEWTFLTKLDEEGGPEARTFHSMAS-DENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWV  172 (341)
T ss_pred             CCEEEEeccCCCCCCCCCceeeEEEE-ECCEEEEECCccCCCccCCCcccceEEEEECCCCeEe
Confidence            65433211100    00111122222 245666676653           24778898876543

>COG5290 IkappaB kinase complex, IKAP component [Transcription]

Probab=92.77  E-value=5.3  Score=33.66  Aligned_cols=92  Identities=13%  Similarity=0.193  Sum_probs=49.3

Q ss_pred             EEEEECCCCCEEEEeeCCC-----eEEEEEccCCeeEEEEe-cceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCc
Q 040370          113 TSANFTKDQRFVLSCGKDS-----TVKLWEVSSGRLVKQYL-GATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTA  186 (228)
Q Consensus       113 ~~~~~~~~~~~l~~~~~d~-----~i~~wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~  186 (228)
                      .-+.|-|.|..+++-..||     .|.++.- +|-.-..+. ...........+|+.....++.+-  .+.+.+|-..+-
T Consensus       250 ~~LSWkpqgS~~ati~td~~~~S~~ViFfEr-NGLrHGef~lr~~~dEk~~~~~wn~~s~vlav~~--~n~~~lwttkNy  326 (1243)
T COG5290         250 HQLSWKPQGSKYATIGTDGCSTSESVIFFER-NGLRHGEFDLRVGCDEKAFLENWNLLSTVLAVAE--GNLLKLWTTKNY  326 (1243)
T ss_pred             hccccccCCceeeeeccCCCCCcceEEEEcc-CCcccCCccccCCchhhhhhhhhhHHHHHHHHhh--cceEEEEEccce
Confidence            3478999999999887665     2445442 221111110 000122334455555555444433  378999987665


Q ss_pred             ceeEEeecCCCCCcEEEEeCCC
Q 040370          187 EKVAKWSSNHIGAPRWIEHSPA  208 (228)
Q Consensus       187 ~~~~~~~~~~~~~v~~~~~~~~  208 (228)
                      .-.... ......+.-+.|+|.
T Consensus       327 hWYLK~-e~~ip~~s~vkwhpe  347 (1243)
T COG5290         327 HWYLKV-ERQIPGISYVKWHPE  347 (1243)
T ss_pred             EEEEEE-eecCCCcceeeeccc
Confidence            443333 233445666788884

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=92.70  E-value=0.58  Score=22.35  Aligned_cols=32  Identities=13%  Similarity=0.332  Sum_probs=20.4

Q ss_pred             EeecCcceEEEEEeCCCCEEEEec-CC--CeEEEE
Q 040370           15 VIQDTHNVRSVSFHPSGDFLLAGT-DH--PIAHLY   46 (228)
Q Consensus        15 ~~~~~~~v~~~~~~~~~~~l~~~~-~d--~~i~vw   46 (228)
                      +......-....|+|||+.|+-++ .+  |.-.||
T Consensus         4 ~t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen    4 LTNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             ES-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred             cccCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence            334566778899999999887544 44  555554

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=92.48  E-value=0.33  Score=40.01  Aligned_cols=68  Identities=16%  Similarity=0.289  Sum_probs=46.8

Q ss_pred             ccceeeEEeCCCCCeEEEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEE
Q 040370           65 NGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWE  137 (228)
Q Consensus        65 ~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd  137 (228)
                      ...++++.-+|.++.++.++.||.|++|+....+..+....   ..+-..+.|...|  |++...|+.+.-|.
T Consensus        14 ~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~~~---~~p~~nlv~tnhg--l~~~tsdrr~la~~   81 (1636)
T KOG3616|consen   14 DEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKICEE---AKPKENLVFTNHG--LVTATSDRRALAWK   81 (1636)
T ss_pred             cceeeeeeecCCCceEEEEecCCcEEEEeecccchhhhhhh---cCCccceeeeccc--eEEEeccchhheee
Confidence            45677888899999999999999999999765544322222   2233445565444  66666777777776

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=92.13  E-value=3.6  Score=30.19  Aligned_cols=56  Identities=9%  Similarity=0.197  Sum_probs=39.4

Q ss_pred             CCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEee------CCCeEEEEEccCCee
Q 040370           86 DGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCG------KDSTVKLWEVSSGRL  143 (228)
Q Consensus        86 dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~------~d~~i~~wd~~~~~~  143 (228)
                      -..|++||..+.+-...-..-  .+.|+.+.|..+.+.++.|.      ....+..||+.+...
T Consensus        15 C~~lC~yd~~~~qW~~~g~~i--~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w   76 (281)
T PF12768_consen   15 CPGLCLYDTDNSQWSSPGNGI--SGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTW   76 (281)
T ss_pred             CCEEEEEECCCCEeecCCCCc--eEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCee
Confidence            346999998776644433332  67899999987777776664      355788999887654

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=92.05  E-value=4.1  Score=30.66  Aligned_cols=161  Identities=14%  Similarity=0.205  Sum_probs=91.9

Q ss_pred             ccceeeEEeCCCCCeEEEEecCCe------EEEEeCCC--C--cee-----eEEeccc------ccceeEEEEECCCCCE
Q 040370           65 NGAINQVRYSSTGGMYVTASKDGA------IRLWDGVS--A--NCV-----RSIVGAH------GTAEATSANFTKDQRF  123 (228)
Q Consensus        65 ~~~i~~~~~~~~~~~l~~~~~dg~------v~iwd~~~--~--~~~-----~~~~~~~------~~~~i~~~~~~~~~~~  123 (228)
                      -+.+..+.+.|++..+++.+.+|.      +...++..  +  ..+     ..+....      .....-++++.+++.+
T Consensus        19 ~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~   98 (326)
T PF13449_consen   19 FGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSF   98 (326)
T ss_pred             cCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCE
Confidence            456788999876666777777777      66555543  1  111     1111110      0113347788778888


Q ss_pred             EEEeeCC------CeEEEEEccCCeeEEEEec-------------ceeeeeeeEEEECCCCcEEEEeeCC----CC--e-
Q 040370          124 VLSCGKD------STVKLWEVSSGRLVKQYLG-------------ATHTQLRFQAVFNDTEEFVLSIDEP----SN--E-  177 (228)
Q Consensus       124 l~~~~~d------~~i~~wd~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~----d~--~-  177 (228)
                      +++.-.+      ..|+.++.. |+....+..             .......-.++.+|++..+++....    |+  . 
T Consensus        99 ~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~  177 (326)
T PF13449_consen   99 WISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRAN  177 (326)
T ss_pred             EEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCcccc
Confidence            8877777      788888876 665544421             1233455678999999965554321    22  1 


Q ss_pred             ------EEE--EEcCC-cceeEEe--ecC------CCCCcEEEEeCCCCcEEEEec-----CCCCEEEeee
Q 040370          178 ------IVI--WDALT-AEKVAKW--SSN------HIGAPRWIEHSPAEAAFITCG-----TDRSVRFWKE  226 (228)
Q Consensus       178 ------i~i--~d~~~-~~~~~~~--~~~------~~~~v~~~~~~~~~~~l~s~~-----~dg~i~vwd~  226 (228)
                            +++  ||..+ ++....+  ...      ....+..+.+-+++++|+.=-     ....++|+.+
T Consensus       178 ~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~~~~~~ri~~v  248 (326)
T PF13449_consen  178 PDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPGTGNYKRIYRV  248 (326)
T ss_pred             cccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCCccceEEEEEE
Confidence                  444  55544 3222222  111      356788899999998776422     2345666554

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=91.90  E-value=6.6  Score=32.76  Aligned_cols=173  Identities=12%  Similarity=0.113  Sum_probs=79.3

Q ss_pred             CeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCCCceeeEEec--ccccceeEEEEEC
Q 040370           41 PIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVG--AHGTAEATSANFT  118 (228)
Q Consensus        41 ~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~--~~~~~~i~~~~~~  118 (228)
                      ..|+|++.. |.......-.    ...+-.+.|+.+. .|+.-..+|++++|++- |+.+.....  ......|..+.+.
T Consensus        64 ~~I~If~~s-G~lL~~~~w~----~~~lI~mgWs~~e-eLI~v~k~g~v~Vy~~~-ge~ie~~svg~e~~~~~I~ec~~f  136 (829)
T KOG2280|consen   64 PYIRIFNIS-GQLLGRILWK----HGELIGMGWSDDE-ELICVQKDGTVHVYGLL-GEFIESNSVGFESQMSDIVECRFF  136 (829)
T ss_pred             eeEEEEecc-ccchHHHHhc----CCCeeeecccCCc-eEEEEeccceEEEeecc-hhhhcccccccccccCceeEEEEe
Confidence            457777764 3333322221    3478889999665 47777899999999975 333322111  1112234444444


Q ss_pred             CCCCEEEEeeCCCeEEEE-EccCCeeEEEEec-ceeeeeeeEEEECCC--CcEEEE-eeCCCCeEEEEEcCCcc-eeEEe
Q 040370          119 KDQRFVLSCGKDSTVKLW-EVSSGRLVKQYLG-ATHTQLRFQAVFNDT--EEFVLS-IDEPSNEIVIWDALTAE-KVAKW  192 (228)
Q Consensus       119 ~~~~~l~~~~~d~~i~~w-d~~~~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~-~~~~d~~i~i~d~~~~~-~~~~~  192 (228)
                      .+|-.+.+  .+|.+.+- +... ..+.++.. +.......+....++  ...++. .....+ ..++....+. ....+
T Consensus       137 ~~GVavlt--~~g~v~~i~~~~~-~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~~~q~~~~  212 (829)
T KOG2280|consen  137 HNGVAVLT--VSGQVILINGVEE-PKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVEESRVQLHAL  212 (829)
T ss_pred             cCceEEEe--cCCcEEEEcCCCc-chhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhh-hcccceeccccccccc
Confidence            45533333  34544443 2222 12222211 001111122222222  112211 111000 1111111111 11122


Q ss_pred             ecCCCCCcEEEEeCCCCcEEEEecCCCCEEEee
Q 040370          193 SSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWK  225 (228)
Q Consensus       193 ~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd  225 (228)
                       ....+.+..+..||+.++|+-=..+|.|.+-+
T Consensus       213 -~~~~~~~~ki~VS~n~~~laLyt~~G~i~~vs  244 (829)
T KOG2280|consen  213 -SWPNSSVVKISVSPNRRFLALYTETGKIWVVS  244 (829)
T ss_pred             -CCCCceEEEEEEcCCcceEEEEecCCcEEEEe
Confidence             12235677788888888888877888776644

>PLN02153 epithiospecifier protein

Probab=91.86  E-value=4.4  Score=30.63  Aligned_cols=69  Identities=10%  Similarity=0.099  Sum_probs=33.5

Q ss_pred             CCCEEEEecCC-----CeEEEEEcccceEEeeeccce--eeeccceeeEEeCCCCCeEEEEecC-----------CeEEE
Q 040370           30 SGDFLLAGTDH-----PIAHLYDVNTFQCYLSANVPE--ISVNGAINQVRYSSTGGMYVTASKD-----------GAIRL   91 (228)
Q Consensus        30 ~~~~l~~~~~d-----~~i~vw~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~l~~~~~d-----------g~v~i   91 (228)
                      +++.++.|+.+     ..+.+||..+.+-........  ......-.+++. -+++.++.|+.+           ..+.+
T Consensus        85 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~v~~  163 (341)
T PLN02153         85 GTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMAS-DENHVYVFGGVSKGGLMKTPERFRTIEA  163 (341)
T ss_pred             CCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEE-ECCEEEEECCccCCCccCCCcccceEEE
Confidence            45666666643     357788887755332211100  000011112222 245666666643           24778


Q ss_pred             EeCCCCce
Q 040370           92 WDGVSANC   99 (228)
Q Consensus        92 wd~~~~~~   99 (228)
                      ||+.+.+-
T Consensus       164 yd~~~~~W  171 (341)
T PLN02153        164 YNIADGKW  171 (341)
T ss_pred             EECCCCeE
Confidence            88876543

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=91.49  E-value=9.8  Score=33.93  Aligned_cols=138  Identities=9%  Similarity=0.111  Sum_probs=82.2

Q ss_pred             ecCCeEEEEeCCCCceeeEEecccccceeEEEE--------ECCCCCEEEEeeCCCeEEEEEccCCee-------EEEEe
Q 040370           84 SKDGAIRLWDGVSANCVRSIVGAHGTAEATSAN--------FTKDQRFVLSCGKDSTVKLWEVSSGRL-------VKQYL  148 (228)
Q Consensus        84 ~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~--------~~~~~~~l~~~~~d~~i~~wd~~~~~~-------~~~~~  148 (228)
                      +.|..+.+|+.+++.....+.+.  ...|..+.        |.|.=++++.-+.--.|.++-+.-.+.       ...+.
T Consensus        96 TiDn~L~lWny~~~~e~~~~d~~--shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~  173 (1311)
T KOG1900|consen   96 TIDNNLFLWNYESDNELAEYDGL--SHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFK  173 (1311)
T ss_pred             EeCCeEEEEEcCCCCccccccch--hhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCccccccccee
Confidence            35789999999997766666554  22333332        333334555544555666665432111       11122


Q ss_pred             cceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEc----CCc---c-----------------eeEEeecCCCCCcEEEE
Q 040370          149 GATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDA----LTA---E-----------------KVAKWSSNHIGAPRWIE  204 (228)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~----~~~---~-----------------~~~~~~~~~~~~v~~~~  204 (228)
                      ....+..+.++....+|+.+++ |. ||  .+|.+    ..+   +                 .+..+...+..+|..++
T Consensus       174 i~~dg~~V~~I~~t~nGRIF~~-G~-dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~  249 (1311)
T KOG1900|consen  174 ISVDGVSVNCITYTENGRIFFA-GR-DG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQIT  249 (1311)
T ss_pred             eecCCceEEEEEeccCCcEEEe-ec-CC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeE
Confidence            2234566777776777776665 44 46  44433    111   0                 01112125677999999


Q ss_pred             eCCCCcEEEEecCCCCEEEeeec
Q 040370          205 HSPAEAAFITCGTDRSVRFWKEI  227 (228)
Q Consensus       205 ~~~~~~~l~s~~~dg~i~vwd~~  227 (228)
                      .......+.+=++.|+|.+|++.
T Consensus       250 ID~SR~IlY~lsek~~v~~Y~i~  272 (1311)
T KOG1900|consen  250 IDNSRNILYVLSEKGTVSAYDIG  272 (1311)
T ss_pred             eccccceeeeeccCceEEEEEcc
Confidence            99989999999999999999973

>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]

Probab=91.39  E-value=9.1  Score=33.35  Aligned_cols=195  Identities=11%  Similarity=0.116  Sum_probs=96.8

Q ss_pred             cCcceEEEEEeCCC------CEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeC---CCC-----C-eEEE
Q 040370           18 DTHNVRSVSFHPSG------DFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYS---STG-----G-MYVT   82 (228)
Q Consensus        18 ~~~~v~~~~~~~~~------~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~-----~-~l~~   82 (228)
                      -+..|.|+++.++.      ++++.|+.|++++++.+....++..+.....  ..++.++.+-   .++     + ++.+
T Consensus       581 l~~~vac~ai~~~~~g~krsrfla~a~~d~~vriisL~p~d~l~~ls~q~l--~~~~~s~~iv~~~~~~~~~~~~L~l~~  658 (1205)
T KOG1898|consen  581 LSTDVACLAIGQDPEGEKRSRFLALASVDNMVRIISLDPSDCLQPLSVQGL--SSPPESLCIVEMEATGGTDVAQLYLLI  658 (1205)
T ss_pred             eceeehhhccCCCCcchhhcceeeeeccccceeEEEecCcceEEEcccccc--CCCccceEEEEecccCCccceeEEEEe
Confidence            45678899998754      5799999999999999987766665543322  3344444442   223     1 5667


Q ss_pred             EecCCeEEEE--eCCCCceee---EEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeee
Q 040370           83 ASKDGAIRLW--DGVSANCVR---SIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRF  157 (228)
Q Consensus        83 ~~~dg~v~iw--d~~~~~~~~---~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~  157 (228)
                      |-.+|.+.-.  |.-+|+..-   .+.+. .+.....+....+...|+..+.+...+  +.+.......+... ......
T Consensus       659 GL~NGvllR~~id~v~G~l~d~rtR~lG~-~pvkLf~~~~~~~s~vL~lSsr~wl~y--~~~~~~h~t~Isy~-~l~~as  734 (1205)
T KOG1898|consen  659 GLRNGVLLRFVIDTVTGQLLDIRTRFLGL-RPVKLFPISMRGQSDVLALSSRPWLLY--TYQQEFHLTPISYS-TLEHAS  734 (1205)
T ss_pred             cccccEEEEEEecccccceeeeheeeecc-ccceEEEEeecCcceeEEecCChhhhh--hhcceeeeeccccc-chhccc
Confidence            7777765544  333443221   11111 022223333344445555555544333  33222222222111 111111


Q ss_pred             EEEECCCCcEEEEeeCCCCeEEEEEcCCc-ceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCC
Q 040370          158 QAVFNDTEEFVLSIDEPSNEIVIWDALTA-EKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRS  220 (228)
Q Consensus       158 ~~~~~~~~~~~~~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~  220 (228)
                      .++......-++....  ..+++.-+... +........+......+..+|....|+.+-.|..
T Consensus       735 ~~~S~qcpeGiv~i~~--n~l~i~~~~~~g~~~n~~~~~l~~tprkvv~h~es~lLii~~td~~  796 (1205)
T KOG1898|consen  735 PFCSEQCPEGIVAISK--NTLRIIALDKLGKVLNVDGFPLAYTPRKVVIHPESGLLIIGRTDHN  796 (1205)
T ss_pred             cccccCCCcchhhhhh--hhhheeeehhhcccccccccccccCcceEEEecCCCeEEEEEeccc
Confidence            1221112222222222  44555544332 3333222355667788888888887777766543

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=91.33  E-value=5.8  Score=30.99  Aligned_cols=59  Identities=14%  Similarity=0.107  Sum_probs=41.5

Q ss_pred             CCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeC
Q 040370           31 GDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDG   94 (228)
Q Consensus        31 ~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~   94 (228)
                      ..++++-+-||.+.+++-+.......+...     --.-.+.|.|....|++++.+..+.-|..
T Consensus       145 ~~~IcVQS~DG~L~~feqe~~~f~~~lp~~-----llPgPl~Y~~~tDsfvt~sss~~l~~Yky  203 (418)
T PF14727_consen  145 RDFICVQSMDGSLSFFEQESFAFSRFLPDF-----LLPGPLCYCPRTDSFVTASSSWTLECYKY  203 (418)
T ss_pred             ceEEEEEecCceEEEEeCCcEEEEEEcCCC-----CCCcCeEEeecCCEEEEecCceeEEEecH
Confidence            467888899999999997764432222221     11234678888888999999888888864

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=91.11  E-value=3.3  Score=27.83  Aligned_cols=31  Identities=10%  Similarity=0.203  Sum_probs=25.2

Q ss_pred             ceeEEEEECCCC------CEEEEeeCCCeEEEEEccC
Q 040370          110 AEATSANFTKDQ------RFVLSCGKDSTVKLWEVSS  140 (228)
Q Consensus       110 ~~i~~~~~~~~~------~~l~~~~~d~~i~~wd~~~  140 (228)
                      ..+..++|+|.|      -.|++.+.++.|.+|....
T Consensus        86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~  122 (173)
T PF12657_consen   86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG  122 (173)
T ss_pred             ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence            478899999954      3688889999999998663

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]

Probab=90.87  E-value=11  Score=33.41  Aligned_cols=174  Identities=10%  Similarity=0.125  Sum_probs=87.8

Q ss_pred             eEEEEEcccceEEeeeccceeeeccceeeEEe---C--C--C--CCeEEEEec---------CCeEEEEeCCC-----C-
Q 040370           42 IAHLYDVNTFQCYLSANVPEISVNGAINQVRY---S--S--T--GGMYVTASK---------DGAIRLWDGVS-----A-   97 (228)
Q Consensus        42 ~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~---~--~--~--~~~l~~~~~---------dg~v~iwd~~~-----~-   97 (228)
                      .|.+.+.++.+.+......+.   .-+.+++.   .  .  .  ..++++|..         .|.+.|+|+-.     + 
T Consensus      1005 ~i~LisP~sw~vi~~iefq~~---E~v~~~k~v~L~~~~t~~~~k~ylavGT~~~~gEDv~~RGr~hi~diIeVVPepgk 1081 (1366)
T KOG1896|consen 1005 SIQLISPESWEVIDKIEFQEN---EHVLHMKYVILDDEETTKGKKPYLAVGTAFIQGEDVPARGRIHIFDIIEVVPEPGK 1081 (1366)
T ss_pred             eeEEecCCccccccccccCcc---ceeeEEEEEEEEecccccCCcceEEEEEeecccccccCcccEEEEEEEEecCCCCC
Confidence            455555555555444444332   23333333   1  1  1  237777642         48899998632     2 


Q ss_pred             ----ceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEc-cCCeeEEEEecceeeeeeeEEEECCCCcEEEEee
Q 040370           98 ----NCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEV-SSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSID  172 (228)
Q Consensus        98 ----~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (228)
                          ..++.+.....+++|..++ .-+|. |+++ ....|.+|++ +....+..-.. ..+..+  .....-+++++++.
T Consensus      1082 P~t~~KlKel~~eE~KGtVsavc-eV~G~-l~~~-~GqKI~v~~l~r~~~ligVaFi-D~~~yv--~s~~~vknlIl~gD 1155 (1366)
T KOG1896|consen 1082 PFTKNKLKELYIEEQKGTVSAVC-EVRGH-LLSS-QGQKIIVRKLDRDSELIGVAFI-DLPLYV--HSMKVVKNLILAGD 1155 (1366)
T ss_pred             CcccceeeeeehhhcccceEEEE-EeccE-EEEc-cCcEEEEEEeccCCcceeeEEe-ccceeE--Eehhhhhhheehhh
Confidence                2334444334466776664 22454 4444 3467999999 44443322111 111122  22222355666654


Q ss_pred             CCCCeEEEEEcCCcce-eEEeec-CCCCCcEEEEeCCCCc--EEEEecCCCCEEEee
Q 040370          173 EPSNEIVIWDALTAEK-VAKWSS-NHIGAPRWIEHSPAEA--AFITCGTDRSVRFWK  225 (228)
Q Consensus       173 ~~d~~i~i~d~~~~~~-~~~~~~-~~~~~v~~~~~~~~~~--~l~s~~~dg~i~vwd  225 (228)
                      -. ..|.+.-...... +..+.. ...-.+.++.|--+|.  .++.+..|+.|+++-
T Consensus      1156 V~-ksisfl~fqeep~rlsL~srd~~~l~v~s~EFLVdg~~L~flvsDa~rNi~vy~ 1211 (1366)
T KOG1896|consen 1156 VM-KSISFLGFQEEPYRLSLLSRDFEPLNVYSTEFLVDGSNLSFLVSDADRNIHVYM 1211 (1366)
T ss_pred             hh-hceEEEEEccCceEEEEeecCCchhhceeeeeEEcCCeeEEEEEcCCCcEEEEE
Confidence            43 5555554433222 222211 1223577777766654  577888899988864

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=90.27  E-value=5.9  Score=29.25  Aligned_cols=172  Identities=15%  Similarity=0.167  Sum_probs=88.9

Q ss_pred             CeEEEEEcccceEEeeeccceee--eccceeeEEeCCCC-----CeEE-EEecCCeEEEEeCCCCceeeEEecccc----
Q 040370           41 PIAHLYDVNTFQCYLSANVPEIS--VNGAINQVRYSSTG-----GMYV-TASKDGAIRLWDGVSANCVRSIVGAHG----  108 (228)
Q Consensus        41 ~~i~vw~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~-----~~l~-~~~~dg~v~iwd~~~~~~~~~~~~~~~----  108 (228)
                      ..|.+||+.+++.++.+..+..-  ..+.+..+.+....     .++. +=+..+.|.|+|+.+++..+.+.....    
T Consensus        34 pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~  113 (287)
T PF03022_consen   34 PKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPD  113 (287)
T ss_dssp             -EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-S
T ss_pred             cEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceecc
Confidence            47899999999987776654321  14567777776521     2333 334456899999998876555432211    


Q ss_pred             -------------cceeEEEEECC---CCCEEEEeeCCCeEEEEEccC-----Ce---------eEEEEecceeeeeeeE
Q 040370          109 -------------TAEATSANFTK---DQRFVLSCGKDSTVKLWEVSS-----GR---------LVKQYLGATHTQLRFQ  158 (228)
Q Consensus       109 -------------~~~i~~~~~~~---~~~~l~~~~~d~~i~~wd~~~-----~~---------~~~~~~~~~~~~~~~~  158 (228)
                                   ...+..++.+|   +++.|+-..-.+ -++|.+.+     ..         .+..+ +. .......
T Consensus       114 ~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss-~~ly~v~T~~L~~~~~~~~~~~~~~v~~l-G~-k~~~s~g  190 (287)
T PF03022_consen  114 AGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS-RKLYRVPTSVLRDPSLSDAQALASQVQDL-GD-KGSQSDG  190 (287)
T ss_dssp             SEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT--SEEEEEEHHHHCSTT--HHH-HHHT-EEE-EE----SECE
T ss_pred             ccceeccCceEecCCCccccccCCCCCCccEEEEEeCCC-CcEEEEEHHHhhCccccccccccccceec-cc-cCCCCce
Confidence                         12255566655   555555444332 12332221     10         11111 11 1123345


Q ss_pred             EEECCCCcEEEEeeCCCCeEEEEEcCCcc---eeEEee-cCC-CCCcEEEEeCC--CCcEEEEec
Q 040370          159 AVFNDTEEFVLSIDEPSNEIVIWDALTAE---KVAKWS-SNH-IGAPRWIEHSP--AEAAFITCG  216 (228)
Q Consensus       159 ~~~~~~~~~~~~~~~~d~~i~i~d~~~~~---~~~~~~-~~~-~~~v~~~~~~~--~~~~l~s~~  216 (228)
                      +..+++|...++- -..+.|..|+..+.-   ....+. ... -..+.++.+.+  +|.+.+.+.
T Consensus       191 ~~~D~~G~ly~~~-~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~sn  254 (287)
T PF03022_consen  191 MAIDPNGNLYFTD-VEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLSN  254 (287)
T ss_dssp             EEEETTTEEEEEE-CCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE-
T ss_pred             EEECCCCcEEEec-CCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEEC
Confidence            6667766665554 446999999987621   112221 222 45778899998  777666543

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast)

Probab=89.98  E-value=10  Score=31.51  Aligned_cols=156  Identities=10%  Similarity=0.126  Sum_probs=81.0

Q ss_pred             ccceeeEEeCCCCCeEEEEecCCeEEEEeCCCCc--eeeEEecccccceeEEEEECC------CCCEEEEeeC-C---Ce
Q 040370           65 NGAINQVRYSSTGGMYVTASKDGAIRLWDGVSAN--CVRSIVGAHGTAEATSANFTK------DQRFVLSCGK-D---ST  132 (228)
Q Consensus        65 ~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~--~~~~~~~~~~~~~i~~~~~~~------~~~~l~~~~~-d---~~  132 (228)
                      ...|..+.|.++++.+++...+|.|.+||...+.  ....+...+...-+.+ .|-+      ...++++.+. +   -.
T Consensus       129 ~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys-~fv~~~~~~~~~~~ll~v~~~~~~k~~  207 (670)
T PF10395_consen  129 DDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYS-KFVNDFELENGKDLLLTVSQLSNSKLS  207 (670)
T ss_pred             ccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehh-hhhcccccccCCceEEEEEEcCCCcEE
Confidence            6789999999999999999999999999993332  2122322221111222 2222      2344554444 2   24


Q ss_pred             EEEEEcc-CCeeEEEEe---cceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecC----CC-CCcEEE
Q 040370          133 VKLWEVS-SGRLVKQYL---GATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSN----HI-GAPRWI  203 (228)
Q Consensus       133 i~~wd~~-~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~----~~-~~v~~~  203 (228)
                      .+++.+. ....+..+.   .......-..+++....-|.+    .++.|.+|++.+.+...++...    .. ..+.++
T Consensus       208 ykL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l----~~~~i~~ysip~f~~~~tI~l~~ii~~~~~~~vSl  283 (670)
T PF10395_consen  208 YKLISLSNESSSIFELSSTILENFGLEDSKFCYQFGKLYQL----SKKTISSYSIPNFQIQKTISLPSIIDKESDDLVSL  283 (670)
T ss_pred             EEEEEeccCCcceEEeehheeccCCcccceEEEeCCEEEEE----eCCEEEEEEcCCceEEEEEEechhhccccccceEe
Confidence            6777771 112222221   111111223344442222333    2589999999887766555322    11 233344


Q ss_pred             EeCCCCcEEEEecCCCCEEEeeec
Q 040370          204 EHSPAEAAFITCGTDRSVRFWKEI  227 (228)
Q Consensus       204 ~~~~~~~~l~s~~~dg~i~vwd~~  227 (228)
                      .--...+.|++.  ++.|.+.|+.
T Consensus       284 ~~~s~nRvLLs~--~nkIyLld~~  305 (670)
T PF10395_consen  284 KPPSPNRVLLSV--NNKIYLLDLK  305 (670)
T ss_pred             ecCCCCeEEEEc--CCEEEEEeeh
Confidence            322234445443  5578887753

It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].

>smart00564 PQQ beta-propeller repeat

Probab=89.41  E-value=1.2  Score=20.12  Aligned_cols=25  Identities=16%  Similarity=0.210  Sum_probs=20.3

Q ss_pred             CEEEEeeCCCeEEEEEccCCeeEEE
Q 040370          122 RFVLSCGKDSTVKLWEVSSGRLVKQ  146 (228)
Q Consensus       122 ~~l~~~~~d~~i~~wd~~~~~~~~~  146 (228)
                      ..++.++.++.+..+|.++|+.+-.
T Consensus         7 ~~v~~~~~~g~l~a~d~~~G~~~W~   31 (33)
T smart00564        7 GTVYVGSTDGTLYALDAKTGEILWT   31 (33)
T ss_pred             CEEEEEcCCCEEEEEEcccCcEEEE
Confidence            3577888899999999998887654

Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.

>PF01011 PQQ: PQQ enzyme repeat family

Probab=89.32  E-value=1.5  Score=20.91  Aligned_cols=28  Identities=14%  Similarity=0.017  Sum_probs=22.8

Q ss_pred             EEEEecCCCeEEEEEcccceEEeeeccc
Q 040370           33 FLLAGTDHPIAHLYDVNTFQCYLSANVP   60 (228)
Q Consensus        33 ~l~~~~~d~~i~vw~~~~~~~~~~~~~~   60 (228)
                      .++.++.+|.+.-.|.++|+.+...+..
T Consensus         2 ~v~~~~~~g~l~AlD~~TG~~~W~~~~~   29 (38)
T PF01011_consen    2 RVYVGTPDGYLYALDAKTGKVLWKFQTG   29 (38)
T ss_dssp             EEEEETTTSEEEEEETTTTSEEEEEESS
T ss_pred             EEEEeCCCCEEEEEECCCCCEEEeeeCC
Confidence            4566789999999999999988777653

; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=89.18  E-value=8.6  Score=29.60  Aligned_cols=190  Identities=14%  Similarity=0.160  Sum_probs=98.5

Q ss_pred             CCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCe--EEEEec-C---CeEEEEeCCCC-ceeeE
Q 040370           30 SGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGM--YVTASK-D---GAIRLWDGVSA-NCVRS  102 (228)
Q Consensus        30 ~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--l~~~~~-d---g~v~iwd~~~~-~~~~~  102 (228)
                      ...+++....++-+.+||++..+ +..+.......-.-...+.+  .|+.  |+.++. +   ..|++|.+... ..+..
T Consensus        67 ~kSlIigTdK~~GL~VYdL~Gk~-lq~~~~Gr~NNVDvrygf~l--~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~~  143 (381)
T PF02333_consen   67 AKSLIIGTDKKGGLYVYDLDGKE-LQSLPVGRPNNVDVRYGFPL--NGKTVDLAVASDRSDGRNSLRLFRIDPDTGELTD  143 (381)
T ss_dssp             GG-EEEEEETTTEEEEEETTS-E-EEEE-SS-EEEEEEEEEEEE--TTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEEE
T ss_pred             ccceEEEEeCCCCEEEEcCCCcE-EEeecCCCcceeeeecceec--CCceEEEEEEecCcCCCCeEEEEEecCCCCcceE
Confidence            45678888888999999998644 34333211110111122233  3332  444443 2   46999977531 22333


Q ss_pred             Eecc-----cccceeEEEEE--CC-CCC-EEEEeeCCCeEEEEEcc---CC----eeEEEEecceeeeeeeEEEECCCCc
Q 040370          103 IVGA-----HGTAEATSANF--TK-DQR-FVLSCGKDSTVKLWEVS---SG----RLVKQYLGATHTQLRFQAVFNDTEE  166 (228)
Q Consensus       103 ~~~~-----~~~~~i~~~~~--~~-~~~-~l~~~~~d~~i~~wd~~---~~----~~~~~~~~~~~~~~~~~~~~~~~~~  166 (228)
                      +...     .....++.+++  ++ ++. +.+....+|.+..|.+.   ++    +.++.+..   ...+..+.......
T Consensus       144 v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~---~sQ~EGCVVDDe~g  220 (381)
T PF02333_consen  144 VTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV---GSQPEGCVVDDETG  220 (381)
T ss_dssp             -CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE----SS-EEEEEEETTTT
T ss_pred             cCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC---CCcceEEEEecccC
Confidence            2211     11234566665  34 444 66677889998888775   22    34666654   23455666777777


Q ss_pred             EEEEeeCCCCeEEEEEcCCc-----ceeEEeec-CCCCCcEEEEeC--CCC-cE-EEEecCCCCEEEeee
Q 040370          167 FVLSIDEPSNEIVIWDALTA-----EKVAKWSS-NHIGAPRWIEHS--PAE-AA-FITCGTDRSVRFWKE  226 (228)
Q Consensus       167 ~~~~~~~~d~~i~i~d~~~~-----~~~~~~~~-~~~~~v~~~~~~--~~~-~~-l~s~~~dg~i~vwd~  226 (228)
                      .++.+- ++..|.-|+....     ..+..... .....|-.|++-  +++ .| |+|.-.+++..||+.
T Consensus       221 ~LYvgE-E~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r  289 (381)
T PF02333_consen  221 RLYVGE-EDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDR  289 (381)
T ss_dssp             EEEEEE-TTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEES
T ss_pred             CEEEec-CccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEec
Confidence            777754 4678888877522     11211111 233567777764  333 34 445546778999885

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]

Probab=89.14  E-value=10  Score=30.41  Aligned_cols=112  Identities=11%  Similarity=0.080  Sum_probs=56.6

Q ss_pred             CCEEEEecCCC------eEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEec------CCeEEEEeCCCCc
Q 040370           31 GDFLLAGTDHP------IAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASK------DGAIRLWDGVSAN   98 (228)
Q Consensus        31 ~~~l~~~~~d~------~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~------dg~v~iwd~~~~~   98 (228)
                      ..+++.|+.+.      .+..+|+.+.+........... .......+..-+.+.++.|+.      ...+.++|+.+.+
T Consensus       123 ~~l~lfGG~~~~~~~~~~l~~~d~~t~~W~~l~~~~~~P-~~r~~Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~~~  201 (482)
T KOG0379|consen  123 DKLYLFGGTDKKYRNLNELHSLDLSTRTWSLLSPTGDPP-PPRAGHSATVVGTKLVVFGGIGGTGDSLNDLHIYDLETST  201 (482)
T ss_pred             CeEEEEccccCCCCChhheEeccCCCCcEEEecCcCCCC-CCcccceEEEECCEEEEECCccCcccceeeeeeecccccc
Confidence            45566677774      7888888887644333322211 122222222223445555543      3568889988776


Q ss_pred             eeeEEecccccc--eeEEEEECCCCCEEEEeeCC-C-----eEEEEEccCCeeE
Q 040370           99 CVRSIVGAHGTA--EATSANFTKDQRFVLSCGKD-S-----TVKLWEVSSGRLV  144 (228)
Q Consensus        99 ~~~~~~~~~~~~--~i~~~~~~~~~~~l~~~~~d-~-----~i~~wd~~~~~~~  144 (228)
                      -.+.......+.  .-.+++.. .+++++.++.+ +     -+.+.|+.+.+..
T Consensus       202 W~~~~~~g~~P~pR~gH~~~~~-~~~~~v~gG~~~~~~~l~D~~~ldl~~~~W~  254 (482)
T KOG0379|consen  202 WSELDTQGEAPSPRYGHAMVVV-GNKLLVFGGGDDGDVYLNDVHILDLSTWEWK  254 (482)
T ss_pred             ceecccCCCCCCCCCCceEEEE-CCeEEEEeccccCCceecceEeeecccceee
Confidence            333222211111  11222222 35566666665 2     4777888875544

>PF14779 BBS1: Ciliary BBSome complex subunit 1

Probab=89.07  E-value=6.8  Score=28.27  Aligned_cols=72  Identities=8%  Similarity=0.079  Sum_probs=46.4

Q ss_pred             ccceeeEEeCC----C---CCeEEEEecCCeEEEEeCCCCceeeEEecccccceeEEE-EECCCCCEEEEeeCCCeEEEE
Q 040370           65 NGAINQVRYSS----T---GGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSA-NFTKDQRFVLSCGKDSTVKLW  136 (228)
Q Consensus        65 ~~~i~~~~~~~----~---~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~l~~~~~d~~i~~w  136 (228)
                      ...|+|++--.    +   -..++.|.++|.|.|.|.+............-+..+... .|..-.-.++.+++||.|++.
T Consensus       176 ~t~ITcm~tikk~~~d~~a~scLViGTE~~~i~iLd~~af~il~~~~lpsvPv~i~~~G~~devdyRI~Va~Rdg~iy~i  255 (257)
T PF14779_consen  176 QTVITCMATIKKSSADEDAVSCLVIGTESGEIYILDPQAFTILKQVQLPSVPVFISVSGQYDEVDYRIVVACRDGKIYTI  255 (257)
T ss_pred             CceeEEeeeecccccCCCCcceEEEEecCCeEEEECchhheeEEEEecCCCceEEEEEeeeeccceEEEEEeCCCEEEEE
Confidence            44677776532    1   237999999999999999888877777765222222111 122123457888899988764

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=88.26  E-value=8.2  Score=28.21  Aligned_cols=197  Identities=12%  Similarity=0.062  Sum_probs=114.4

Q ss_pred             cceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCCCce
Q 040370           20 HNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANC   99 (228)
Q Consensus        20 ~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~   99 (228)
                      ..-..++-.|||..-+++...+.|--.|..+|+..... ...   ...-..|..-|+|..-++-+.. .|.-.|.++.+.
T Consensus        62 ~ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~yp-Lg~---Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~ev  136 (353)
T COG4257          62 SAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYP-LGS---GASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEV  136 (353)
T ss_pred             CCccccccCCCCceEEecCccccceecCCCCCceEEEe-cCC---CCCCceEEECCCCCeeEecCcc-eeEEecCcccce
Confidence            44566777788877777777777777788888764433 222   4456778888988866654433 455566655543


Q ss_pred             e-eEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCCeE
Q 040370          100 V-RSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEI  178 (228)
Q Consensus       100 ~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i  178 (228)
                      . ..+...+.........|.+.|++-+++... .---.|... ..+..+... .......++..|+|..-+++-. ++.|
T Consensus       137 t~f~lp~~~a~~nlet~vfD~~G~lWFt~q~G-~yGrLdPa~-~~i~vfpaP-qG~gpyGi~atpdGsvwyasla-gnai  212 (353)
T COG4257         137 TRFPLPLEHADANLETAVFDPWGNLWFTGQIG-AYGRLDPAR-NVISVFPAP-QGGGPYGICATPDGSVWYASLA-GNAI  212 (353)
T ss_pred             EEeecccccCCCcccceeeCCCccEEEeeccc-cceecCccc-CceeeeccC-CCCCCcceEECCCCcEEEEecc-ccce
Confidence            2 233334446677888899999988887522 111111111 122333222 2334456777888888777544 4667


Q ss_pred             EEEEcCCcceeEEe-ecCCCCCcEEEEeCCCCcEEEEecCCCCEEEee
Q 040370          179 VIWDALTAEKVAKW-SSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWK  225 (228)
Q Consensus       179 ~i~d~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd  225 (228)
                      -..|..++.....- .......-..+.-+|.+..-+|....+.+..+|
T Consensus       213 aridp~~~~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfd  260 (353)
T COG4257         213 ARIDPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFD  260 (353)
T ss_pred             EEcccccCCcceecCCCcccccccccccCccCcEEEeccCCceeeEeC
Confidence            77776666322211 122223344555567777777766666666555

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=88.07  E-value=10  Score=29.18  Aligned_cols=141  Identities=11%  Similarity=0.144  Sum_probs=80.8

Q ss_pred             CeEEEEEccc--ceEEeeecc---ceeeeccceeeEEe--CC-CCC-eEEEEecCCeEEEEeCC---CC----ceeeEEe
Q 040370           41 PIAHLYDVNT--FQCYLSANV---PEISVNGAINQVRY--SS-TGG-MYVTASKDGAIRLWDGV---SA----NCVRSIV  104 (228)
Q Consensus        41 ~~i~vw~~~~--~~~~~~~~~---~~~~~~~~i~~~~~--~~-~~~-~l~~~~~dg~v~iwd~~---~~----~~~~~~~  104 (228)
                      ..|++|.+..  +.. .....   +...-...+..+++  +| +|. +++....+|.+..|.+.   .+    +.++++.
T Consensus       127 n~l~~f~id~~~g~L-~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~  205 (381)
T PF02333_consen  127 NSLRLFRIDPDTGEL-TDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFK  205 (381)
T ss_dssp             -EEEEEEEETTTTEE-EE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE
T ss_pred             CeEEEEEecCCCCcc-eEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEec
Confidence            5799998863  332 22211   11110234566665  44 354 66677889988888764   22    3566666


Q ss_pred             cccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCC-----eeEEEEecceeeeee--eEEEECCC-CcEEEEeeCCCC
Q 040370          105 GAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSG-----RLVKQYLGATHTQLR--FQAVFNDT-EEFVLSIDEPSN  176 (228)
Q Consensus       105 ~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~-----~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~d~  176 (228)
                      .   ...+..+.......+|+.+-++.-|.-|+.+..     +.+....+.....-+  ..+...++ ..|+++++..++
T Consensus       206 ~---~sQ~EGCVVDDe~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~  282 (381)
T PF02333_consen  206 V---GSQPEGCVVDDETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDN  282 (381)
T ss_dssp             ----SS-EEEEEEETTTTEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGT
T ss_pred             C---CCcceEEEEecccCCEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCC
Confidence            5   457888889988889999999988988887621     222222121111122  22322333 468888888789


Q ss_pred             eEEEEEcCC
Q 040370          177 EIVIWDALT  185 (228)
Q Consensus       177 ~i~i~d~~~  185 (228)
                      +..+||.+.
T Consensus       283 sf~Vy~r~~  291 (381)
T PF02333_consen  283 SFAVYDREG  291 (381)
T ss_dssp             EEEEEESST
T ss_pred             eEEEEecCC
Confidence            999999765

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]

Probab=87.77  E-value=2.9  Score=35.16  Aligned_cols=140  Identities=15%  Similarity=0.167  Sum_probs=81.4

Q ss_pred             EEEEecCCCeEEEEEcccceE-EeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEE--------EeCCCCceeeEE
Q 040370           33 FLLAGTDHPIAHLYDVNTFQC-YLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRL--------WDGVSANCVRSI  103 (228)
Q Consensus        33 ~l~~~~~d~~i~vw~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i--------wd~~~~~~~~~~  103 (228)
                      .+..|++++.+.++.-..+.. .......... ...+.++.+++..  +..|.-||++-.        ||.+   +...+
T Consensus       549 Tic~gtq~ssisissss~~s~ke~~~~~~spe-~~~v~~l~~ss~S--lgagl~dgt~a~y~rap~gSwd~e---p~~~~  622 (925)
T KOG3522|consen  549 TICLGTQTSSISISSSSLDSIKEVTSEPPSPE-HESVKLLLFSSGS--LGAGLIDGTLAVYGRAPSGSWDGE---PNISI  622 (925)
T ss_pred             cccccCccceeEEeeccCCcccceeccCCCCc-hhhhhhhhccccc--cccCccCCccccccCCCCCCCCCC---Ccccc
Confidence            567788999999998763221 1111111111 5567777776542  445555555544        4433   11222


Q ss_pred             ecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecce-eeeeeeEEEECCCCcEEEEeeCCCCeEEEEE
Q 040370          104 VGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGAT-HTQLRFQAVFNDTEEFVLSIDEPSNEIVIWD  182 (228)
Q Consensus       104 ~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d  182 (228)
                      ..  ...++.+.++..|   ++-++.+|.|.++...+.........+. +...++.+.+...+-++..+.+  ..++.++
T Consensus       623 ~~--g~lPvrsla~~ed---~~was~gG~V~vi~~tt~~~~~~leahqee~~~Vthm~~~~~gVwvafasG--~~~rlfh  695 (925)
T KOG3522|consen  623 PT--GSLPVRSLAFQED---FVWASEGGCVHVIPSTTFIRSWDLEAHQEEAHSVTHMLYLDNGVWVAFASG--DEERLFH  695 (925)
T ss_pred             cc--CCccccchhhhhc---eeeeecCCceEEEechhccccchhHHHHhhcceEEEEEeeCCceEEEEcCC--CEEEEec
Confidence            22  2557777776544   5677789999999987755544443322 4556777777777777666554  4566555


Q ss_pred             cCC
Q 040370          183 ALT  185 (228)
Q Consensus       183 ~~~  185 (228)
                      ..+
T Consensus       696 tet  698 (925)
T KOG3522|consen  696 TET  698 (925)
T ss_pred             ccc
Confidence            444

>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins

Probab=87.38  E-value=12  Score=29.28  Aligned_cols=30  Identities=17%  Similarity=0.227  Sum_probs=24.2

Q ss_pred             CCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370          198 GAPRWIEHSPAEAAFITCGTDRSVRFWKEI  227 (228)
Q Consensus       198 ~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~  227 (228)
                      ..|.++...+..+.|++...+|.|.+|++.
T Consensus       190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~  219 (422)
T PF08801_consen  190 PKIVQVAVDPSRRLLYTLTSDGSIQVWDLG  219 (422)
T ss_dssp             --EEEEEEETTTTEEEEEESSE-EEEEEE-
T ss_pred             hceeeEEecCCcCEEEEEeCCCcEEEEEEe
Confidence            348889998888999999999999999974

RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=87.30  E-value=11  Score=28.82  Aligned_cols=112  Identities=17%  Similarity=0.076  Sum_probs=67.5

Q ss_pred             CEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCCCceeeEEecccccce
Q 040370           32 DFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAE  111 (228)
Q Consensus        32 ~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~  111 (228)
                      ..+.++..+|.|.-.|.++++.+....... . ...+..-.+..+|+ ++.++.+|.+..+|.++++..-...... ...
T Consensus        69 g~v~~~~~~G~i~A~d~~~g~~~W~~~~~~-~-~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~-~~~  144 (370)
T COG1520          69 GTVYVGTRDGNIFALNPDTGLVKWSYPLLG-A-VAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGG-SPY  144 (370)
T ss_pred             CeEEEecCCCcEEEEeCCCCcEEecccCcC-c-ceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCC-CeE
Confidence            345556778888888988888655443331 0 11122222222565 7888889999999998898887776642 011


Q ss_pred             eEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEe
Q 040370          112 ATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYL  148 (228)
Q Consensus       112 i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~  148 (228)
                      +..-....++ .++.++.++.+.-.|..+++..-...
T Consensus       145 ~~~~~v~~~~-~v~~~s~~g~~~al~~~tG~~~W~~~  180 (370)
T COG1520         145 YASPPVVGDG-TVYVGTDDGHLYALNADTGTLKWTYE  180 (370)
T ss_pred             EecCcEEcCc-EEEEecCCCeEEEEEccCCcEEEEEe
Confidence            1111222233 34444467888888888887766544

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=87.27  E-value=9.6  Score=27.89  Aligned_cols=161  Identities=10%  Similarity=0.079  Sum_probs=90.3

Q ss_pred             CcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCCCc
Q 040370           19 THNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSAN   98 (228)
Q Consensus        19 ~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~   98 (228)
                      ...-..+..-||+..-++-+.. -|.-.|-++.+. ..+..+..+.........|.+.|++-+++.. |.-=-.|.. ..
T Consensus       103 Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~ev-t~f~lp~~~a~~nlet~vfD~~G~lWFt~q~-G~yGrLdPa-~~  178 (353)
T COG4257         103 GASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEV-TRFPLPLEHADANLETAVFDPWGNLWFTGQI-GAYGRLDPA-RN  178 (353)
T ss_pred             CCCCceEEECCCCCeeEecCcc-eeEEecCcccce-EEeecccccCCCcccceeeCCCccEEEeecc-ccceecCcc-cC
Confidence            3344455556666554443322 344445444443 3344444444677888999999998888863 221111221 12


Q ss_pred             eeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEeccee-eeeeeEEEECCCCcEEEEeeCCCCe
Q 040370           99 CVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATH-TQLRFQAVFNDTEEFVLSIDEPSNE  177 (228)
Q Consensus        99 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~~  177 (228)
                      .+..+.... ...-+.++..|+|..-++.-.+..|-..|..++. ...+..... ......+..+|.+..-++.-. .+.
T Consensus       179 ~i~vfpaPq-G~gpyGi~atpdGsvwyaslagnaiaridp~~~~-aev~p~P~~~~~gsRriwsdpig~~wittwg-~g~  255 (353)
T COG4257         179 VISVFPAPQ-GGGPYGICATPDGSVWYASLAGNAIARIDPFAGH-AEVVPQPNALKAGSRRIWSDPIGRAWITTWG-TGS  255 (353)
T ss_pred             ceeeeccCC-CCCCcceEECCCCcEEEEeccccceEEcccccCC-cceecCCCcccccccccccCccCcEEEeccC-Cce
Confidence            233333332 4455778899999988887778888888887762 223322211 222333444566666666444 477


Q ss_pred             EEEEEcCCc
Q 040370          178 IVIWDALTA  186 (228)
Q Consensus       178 i~i~d~~~~  186 (228)
                      +..||..+.
T Consensus       256 l~rfdPs~~  264 (353)
T COG4257         256 LHRFDPSVT  264 (353)
T ss_pred             eeEeCcccc
Confidence            887776544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	228
2h9l_A	329	Wdr5delta23 Length = 329		1e-13
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		2e-13
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		2e-13
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		2e-13
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		2e-13
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		2e-13
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		2e-13
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		2e-13
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		2e-13
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		2e-13
2g99_A	308	Structural Basis For The Specific Recognition Of Me		2e-13
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		2e-13
2gnq_A	336	Structure Of Wdr5 Length = 336		2e-13
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		2e-13
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		3e-13
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		4e-13
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		1e-12
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		2e-09
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		8e-08
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		7e-05
2ovp_B	445	Structure Of The Skp1-Fbw7 Complex Length = 445		4e-06
2qxv_A	361	Structural Basis Of Ezh2 Recognition By Eed Length		1e-05
3iiw_A	365	Crystal Structure Of Eed In Complex With A Trimethy		1e-05
3jzn_A	366	Structure Of Eed In Apo Form Length = 366		1e-05
3iiy_A	365	Crystal Structure Of Eed In Complex With A Trimethy		1e-05
3jpx_A	402	Eed: A Novel Histone Trimethyllysine Binder Within		1e-05
1p22_A	435	Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex		2e-05
3dm0_A	694	Maltose Binding Protein Fusion With Rack1 From A. T		3e-05
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		3e-05
3iza_B	1263	Structure Of An Apoptosome-Procaspase-9 Card Comple		5e-05
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		1e-04
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		1e-04
3zey_7	318	High-resolution Cryo-electron Microscopy Structure		1e-04
1r5m_A	425	Crystal Structure Of The C-Terminal Wd40 Domain Of		1e-04
4aow_A	340	Crystal Structure Of The Human Rack1 Protein At A R		2e-04
2zkq_a	317	Structure Of A Mammalian Ribosomal 40s Subunit With		2e-04
3mks_B	464	Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH		2e-04
3zwl_B	369	Structure Of Eukaryotic Translation Initiation Fact		3e-04
1nex_B	464	Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp		5e-04
4gqb_B	344	Crystal Structure Of The Human Prmt5:mep50 Complex		9e-04

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 72.8 bits (177), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 52/222 (23%), Positives = 108/222 (48%), Gaps = 11/222 (4%)
Query: 8   TAKRAFRVIQDTHN-VRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNG 66
           ++ +  + ++   N V   +F+P  + +++G+      ++DV T +C     +P  S   
Sbjct: 112 SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL--KTLPAHS--D 167
Query: 67  AINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLS 126
            ++ V ++  G + V++S DG  R+WD  S  C+++++        +   F+ + +++L+
Sbjct: 168 PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID-DDNPPVSFVKFSPNGKYILA 226
Query: 127 CGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDT-EEFVLSIDEPSNEIVIWDALT 185
              D+T+KLW+ S G+ +K Y G  + +    A F+ T  ++++S  E  N + IW+  T
Sbjct: 227 ATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSE-DNLVYIWNLQT 285
Query: 186 AEKVAKWSSNHIGAPRWIEHSPAEAAFITCG--TDRSVRFWK 225
            E V K    H          P E    +     D++++ WK
Sbjct: 286 KEIVQKL-QGHTDVVISTACHPTENIIASAALENDKTIKLWK 326

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 72.8 bits (177), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 52/222 (23%), Positives = 108/222 (48%), Gaps = 11/222 (4%)
Query: 8   TAKRAFRVIQDTHN-VRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNG 66
           ++ +  + ++   N V   +F+P  + +++G+      ++DV T +C     +P  S   
Sbjct: 101 SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL--KTLPAHS--D 156
Query: 67  AINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLS 126
            ++ V ++  G + V++S DG  R+WD  S  C+++++        +   F+ + +++L+
Sbjct: 157 PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID-DDNPPVSFVKFSPNGKYILA 215
Query: 127 CGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDT-EEFVLSIDEPSNEIVIWDALT 185
              D+T+KLW+ S G+ +K Y G  + +    A F+ T  ++++S  E  N + IW+  T
Sbjct: 216 ATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSE-DNLVYIWNLQT 274
Query: 186 AEKVAKWSSNHIGAPRWIEHSPAEAAFITCG--TDRSVRFWK 225
            E V K    H          P E    +     D++++ WK
Sbjct: 275 KEIVQKL-QGHTDVVISTACHPTENIIASAALENDKTIKLWK 315

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 72.8 bits (177), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 52/222 (23%), Positives = 108/222 (48%), Gaps = 11/222 (4%)
Query: 8   TAKRAFRVIQDTHN-VRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNG 66
           ++ +  + ++   N V   +F+P  + +++G+      ++DV T +C     +P  S   
Sbjct: 95  SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL--KTLPAHS--D 150
Query: 67  AINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLS 126
            ++ V ++  G + V++S DG  R+WD  S  C+++++        +   F+ + +++L+
Sbjct: 151 PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID-DDNPPVSFVKFSPNGKYILA 209
Query: 127 CGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDT-EEFVLSIDEPSNEIVIWDALT 185
              D+T+KLW+ S G+ +K Y G  + +    A F+ T  ++++S  E  N + IW+  T
Sbjct: 210 ATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSE-DNLVYIWNLQT 268
Query: 186 AEKVAKWSSNHIGAPRWIEHSPAEAAFITCG--TDRSVRFWK 225
            E V K    H          P E    +     D++++ WK
Sbjct: 269 KEIVQKL-QGHTDVVISTACHPTENIIASAALENDKTIKLWK 309

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 72.8 bits (177), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 52/222 (23%), Positives = 108/222 (48%), Gaps = 11/222 (4%)
Query: 8   TAKRAFRVIQDTHN-VRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNG 66
           ++ +  + ++   N V   +F+P  + +++G+      ++DV T +C     +P  S   
Sbjct: 95  SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL--KTLPAHS--D 150
Query: 67  AINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLS 126
            ++ V ++  G + V++S DG  R+WD  S  C+++++        +   F+ + +++L+
Sbjct: 151 PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID-DDNPPVSFVKFSPNGKYILA 209
Query: 127 CGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDT-EEFVLSIDEPSNEIVIWDALT 185
              D+T+KLW+ S G+ +K Y G  + +    A F+ T  ++++S  E  N + IW+  T
Sbjct: 210 ATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSE-DNLVYIWNLQT 268
Query: 186 AEKVAKWSSNHIGAPRWIEHSPAEAAFITCG--TDRSVRFWK 225
            E V K    H          P E    +     D++++ WK
Sbjct: 269 KEIVQKL-QGHTDVVISTACHPTENIIASAALENDKTIKLWK 309

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 72.8 bits (177), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 52/222 (23%), Positives = 108/222 (48%), Gaps = 11/222 (4%)
Query: 8   TAKRAFRVIQDTHN-VRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNG 66
           ++ +  + ++   N V   +F+P  + +++G+      ++DV T +C     +P  S   
Sbjct: 96  SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL--KTLPAHS--D 151
Query: 67  AINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLS 126
            ++ V ++  G + V++S DG  R+WD  S  C+++++        +   F+ + +++L+
Sbjct: 152 PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID-DDNPPVSFVKFSPNGKYILA 210
Query: 127 CGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDT-EEFVLSIDEPSNEIVIWDALT 185
              D+T+KLW+ S G+ +K Y G  + +    A F+ T  ++++S  E  N + IW+  T
Sbjct: 211 ATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSE-DNLVYIWNLQT 269
Query: 186 AEKVAKWSSNHIGAPRWIEHSPAEAAFITCG--TDRSVRFWK 225
            E V K    H          P E    +     D++++ WK
Sbjct: 270 KEIVQKL-QGHTDVVISTACHPTENIIASAALENDKTIKLWK 310

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 72.4 bits (176), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 52/222 (23%), Positives = 108/222 (48%), Gaps = 11/222 (4%)
Query: 8   TAKRAFRVIQDTHN-VRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNG 66
           ++ +  + ++   N V   +F+P  + +++G+      ++DV T +C     +P  S   
Sbjct: 94  SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL--KTLPAHS--D 149
Query: 67  AINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLS 126
            ++ V ++  G + V++S DG  R+WD  S  C+++++        +   F+ + +++L+
Sbjct: 150 PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID-DDNPPVSFVKFSPNGKYILA 208
Query: 127 CGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDT-EEFVLSIDEPSNEIVIWDALT 185
              D+T+KLW+ S G+ +K Y G  + +    A F+ T  ++++S  E  N + IW+  T
Sbjct: 209 ATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSE-DNLVYIWNLQT 267
Query: 186 AEKVAKWSSNHIGAPRWIEHSPAEAAFITCG--TDRSVRFWK 225
            E V K    H          P E    +     D++++ WK
Sbjct: 268 KEIVQKL-QGHTDVVISTACHPTENIIASAALENDKTIKLWK 308

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 72.4 bits (176), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 52/222 (23%), Positives = 108/222 (48%), Gaps = 11/222 (4%)
Query: 8   TAKRAFRVIQDTHN-VRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNG 66
           ++ +  + ++   N V   +F+P  + +++G+      ++DV T +C     +P  S   
Sbjct: 101 SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL--KTLPAHS--D 156
Query: 67  AINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLS 126
            ++ V ++  G + V++S DG  R+WD  S  C+++++        +   F+ + +++L+
Sbjct: 157 PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID-DDNPPVSFVKFSPNGKYILA 215
Query: 127 CGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDT-EEFVLSIDEPSNEIVIWDALT 185
              D+T+KLW+ S G+ +K Y G  + +    A F+ T  ++++S  E  N + IW+  T
Sbjct: 216 ATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSE-DNLVYIWNLQT 274
Query: 186 AEKVAKWSSNHIGAPRWIEHSPAEAAFITCG--TDRSVRFWK 225
            E V K    H          P E    +     D++++ WK
Sbjct: 275 KEIVQKL-QGHTDVVISTACHPTENIIASAALENDKTIKLWK 315

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 72.4 bits (176), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 52/222 (23%), Positives = 108/222 (48%), Gaps = 11/222 (4%)
Query: 8   TAKRAFRVIQDTHN-VRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNG 66
           ++ +  + ++   N V   +F+P  + +++G+      ++DV T +C     +P  S   
Sbjct: 101 SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL--KTLPAHS--D 156
Query: 67  AINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLS 126
            ++ V ++  G + V++S DG  R+WD  S  C+++++        +   F+ + +++L+
Sbjct: 157 PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID-DDNPPVSFVKFSPNGKYILA 215
Query: 127 CGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDT-EEFVLSIDEPSNEIVIWDALT 185
              D+T+KLW+ S G+ +K Y G  + +    A F+ T  ++++S  E  N + IW+  T
Sbjct: 216 ATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSE-DNLVYIWNLQT 274
Query: 186 AEKVAKWSSNHIGAPRWIEHSPAEAAFITCG--TDRSVRFWK 225
            E V K    H          P E    +     D++++ WK
Sbjct: 275 KEIVQKL-QGHTDVVISTACHPTENIIASAALENDKTIKLWK 315

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 72.4 bits (176), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 52/222 (23%), Positives = 108/222 (48%), Gaps = 11/222 (4%)
Query: 8   TAKRAFRVIQDTHN-VRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNG 66
           ++ +  + ++   N V   +F+P  + +++G+      ++DV T +C     +P  S   
Sbjct: 100 SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL--KTLPAHS--D 155
Query: 67  AINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLS 126
            ++ V ++  G + V++S DG  R+WD  S  C+++++        +   F+ + +++L+
Sbjct: 156 PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID-DDNPPVSFVKFSPNGKYILA 214
Query: 127 CGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDT-EEFVLSIDEPSNEIVIWDALT 185
              D+T+KLW+ S G+ +K Y G  + +    A F+ T  ++++S  E  N + IW+  T
Sbjct: 215 ATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSE-DNLVYIWNLQT 273
Query: 186 AEKVAKWSSNHIGAPRWIEHSPAEAAFITCG--TDRSVRFWK 225
            E V K    H          P E    +     D++++ WK
Sbjct: 274 KEIVQKL-QGHTDVVISTACHPTENIIASAALENDKTIKLWK 314

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 72.4 bits (176), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 50/221 (22%), Positives = 103/221 (46%), Gaps = 9/221 (4%)
Query: 8   TAKRAFRVIQDTHN-VRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNG 66
           ++ +  + ++   N V   +F+P  + +++G+      ++DV T +C     +P  S   
Sbjct: 98  SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL--KTLPAHS--D 153
Query: 67  AINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLS 126
            ++ V ++  G + V++S DG  R+WD  S  C+++++        +   F+ + +++L+
Sbjct: 154 PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID-DDNPPVSFVKFSPNGKYILA 212
Query: 127 CGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTA 186
              D+T+KLW+ S G+ +K Y G  + +    A F+ T    +      N + IW+  T 
Sbjct: 213 ATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTK 272
Query: 187 EKVAKWSSNHIGAPRWIEHSPAEAAFITCG--TDRSVRFWK 225
           E V K    H          P E    +     D++++ WK
Sbjct: 273 EIVQKLQG-HTDVVISTACHPTENIIASAALENDKTIKLWK 312

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 72.4 bits (176), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 52/222 (23%), Positives = 108/222 (48%), Gaps = 11/222 (4%)
Query: 8   TAKRAFRVIQDTHN-VRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNG 66
           ++ +  + ++   N V   +F+P  + +++G+      ++DV T +C     +P  S   
Sbjct: 91  SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL--KTLPAHS--D 146
Query: 67  AINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLS 126
            ++ V ++  G + V++S DG  R+WD  S  C+++++        +   F+ + +++L+
Sbjct: 147 PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID-DDNPPVSFVKFSPNGKYILA 205
Query: 127 CGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDT-EEFVLSIDEPSNEIVIWDALT 185
              D+T+KLW+ S G+ +K Y G  + +    A F+ T  ++++S  E  N + IW+  T
Sbjct: 206 ATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSE-DNLVYIWNLQT 264
Query: 186 AEKVAKWSSNHIGAPRWIEHSPAEAAFITCG--TDRSVRFWK 225
            E V K    H          P E    +     D++++ WK
Sbjct: 265 KEIVQKL-QGHTDVVISTACHPTENIIASAALENDKTIKLWK 305

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 72.4 bits (176), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 52/222 (23%), Positives = 107/222 (48%), Gaps = 11/222 (4%)
Query: 8   TAKRAFRVIQDTHN-VRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNG 66
           ++ +  + ++   N V   +F+P  + +++G+      ++DV T  C     +P  S   
Sbjct: 98  SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCL--KTLPAHS--D 153
Query: 67  AINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLS 126
            ++ V ++  G + V++S DG  R+WD  S  C+++++        +   F+ + +++L+
Sbjct: 154 PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID-DDNPPVSFVKFSPNGKYILA 212
Query: 127 CGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDT-EEFVLSIDEPSNEIVIWDALT 185
              D+T+KLW+ S G+ +K Y G  + +    A F+ T  ++++S  E  N + IW+  T
Sbjct: 213 ATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSE-DNMVYIWNLQT 271
Query: 186 AEKVAKWSSNHIGAPRWIEHSPAEAAFITCG--TDRSVRFWK 225
            E V K    H          P E    +     D++++ WK
Sbjct: 272 KEIVQKL-QGHTDVVISTACHPTENIIASAALENDKTIKLWK 312

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 72.4 bits (176), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 52/219 (23%), Positives = 106/219 (48%), Gaps = 11/219 (5%)
Query: 11  RAFRVIQDTHN-VRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAIN 69
           +  + ++   N V   +F+P  + +++G+      ++DV T +C     +P  S    ++
Sbjct: 122 KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL--KTLPAHS--DPVS 177
Query: 70  QVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGK 129
            V ++  G + V++S DG  R+WD  S  C+++++        +   F+ + +++L+   
Sbjct: 178 AVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID-DDNPPVSFVKFSPNGKYILAATL 236
Query: 130 DSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDT-EEFVLSIDEPSNEIVIWDALTAEK 188
           D+T+KLW+ S G+ +K Y G  + +    A F+ T  ++++S  E  N + IW+  T E 
Sbjct: 237 DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSE-DNLVYIWNLQTKEI 295
Query: 189 VAKWSSNHIGAPRWIEHSPAEAAFITCG--TDRSVRFWK 225
           V K    H          P E    +     D++++ WK
Sbjct: 296 VQKL-QGHTDVVISTACHPTENIIASAALENDKTIKLWK 333

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 72.4 bits (176), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 52/219 (23%), Positives = 106/219 (48%), Gaps = 11/219 (5%)
Query: 11  RAFRVIQDTHN-VRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAIN 69
           +  + ++   N V   +F+P  + +++G+      ++DV T +C     +P  S    ++
Sbjct: 120 KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL--KTLPAHS--DPVS 175
Query: 70  QVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGK 129
            V ++  G + V++S DG  R+WD  S  C+++++        +   F+ + +++L+   
Sbjct: 176 AVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID-DDNPPVSFVKFSPNGKYILAATL 234
Query: 130 DSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDT-EEFVLSIDEPSNEIVIWDALTAEK 188
           D+T+KLW+ S G+ +K Y G  + +    A F+ T  ++++S  E  N + IW+  T E 
Sbjct: 235 DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSE-DNLVYIWNLQTKEI 293
Query: 189 VAKWSSNHIGAPRWIEHSPAEAAFITCG--TDRSVRFWK 225
           V K    H          P E    +     D++++ WK
Sbjct: 294 VQKL-QGHTDVVISTACHPTENIIASAALENDKTIKLWK 331

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 57.4 bits (137), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 47/224 (20%), Positives = 94/224 (41%), Gaps = 13/224 (5%)
Query: 3   DFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDV--NTFQCYLSANVP 60
           +F K      F +   T  V SV F P+G++L + +   +  ++      F+  +S +  
Sbjct: 10  EFVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKL 69
Query: 61  EISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKD 120
            IS       V +SS   + V+AS D  +++WD  S  C++++ G   +      NF   
Sbjct: 70  GIS------DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGH--SNYVFCCNFNPQ 121
Query: 121 QRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVI 180
              ++S   D +V++W+V +G+ +K      H+       FN     ++S         I
Sbjct: 122 SNLIVSGSFDESVRIWDVKTGKCLKTL--PAHSDPVSAVHFNRDGSLIVS-SSYDGLCRI 178
Query: 181 WDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFW 224
           WD  + + +     +      +++ SP     +    D +++ W
Sbjct: 179 WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 222

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 57.0 bits (136), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 47/224 (20%), Positives = 94/224 (41%), Gaps = 13/224 (5%)
Query: 3   DFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDV--NTFQCYLSANVP 60
           +F K      F +   T  V SV F P+G++L + +   +  ++      F+  +S +  
Sbjct: 10  EFVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKL 69
Query: 61  EISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKD 120
            IS       V +SS   + V+AS D  +++WD  S  C++++ G   +      NF   
Sbjct: 70  GIS------DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGH--SNYVFCCNFNPQ 121
Query: 121 QRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVI 180
              ++S   D +V++W+V +G+ +K      H+       FN     ++S         I
Sbjct: 122 SNLIVSGSFDESVRIWDVKTGKCLKTL--PAHSDPVSAVHFNRDGSLIVS-SSYDGLCRI 178
Query: 181 WDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFW 224
           WD  + + +     +      +++ SP     +    D +++ W
Sbjct: 179 WDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 222

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 70.1 bits (170), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 51/222 (22%), Positives = 106/222 (47%), Gaps = 11/222 (4%)
Query: 8   TAKRAFRVIQDTHN-VRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNG 66
           ++ +  + ++   N V   +F+P  + +++G+      ++DV T  C     +P  S   
Sbjct: 98  SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCL--KTLPAHS--D 153
Query: 67  AINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLS 126
            ++ V ++  G + V++S DG  R+WD  S  C+++++        +   F+ + +++L+
Sbjct: 154 PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID-DDNPPVSFVKFSPNGKYILA 212
Query: 127 CGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDT-EEFVLSIDEPSNEIVIWDALT 185
              D+ +KLW+ S G+ +K Y G  + +    A F+ T  ++++S  E  N + IW+  T
Sbjct: 213 ATLDNDLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSE-DNMVYIWNLQT 271
Query: 186 AEKVAKWSSNHIGAPRWIEHSPAEAAFITCG--TDRSVRFWK 225
            E V K    H          P E    +     D++++ WK
Sbjct: 272 KEIVQKL-QGHTDVVISTACHPTENIIASAALENDKTIKLWK 312

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 55/229 (24%), Positives = 91/229 (39%), Gaps = 31/229 (13%)
Query: 20  HNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGM 79
            ++ S+ + PSGD L++G+      ++D+ T QC L+     +S+   +  V  S   G 
Sbjct: 166 QDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLT-----LSIEDGVTTVAVSPGDGK 220
Query: 80  YVTA-SKDGAIRLWDGVSANCVRSIVGAH--GTAEATSAN---FTKDQRFVLSCGKDSTV 133
           Y+ A S D A+R+WD  +   V  +   +  GT    S     FT+D + V+S   D +V
Sbjct: 221 YIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSV 280
Query: 134 KLWEV------------SSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIW 181
           KLW +            +SG     Y+G  H            +E++LS       ++ W
Sbjct: 281 KLWNLQNANNKSDSKTPNSGTCEVTYIG--HKDFVLSVATTQNDEYILS-GSKDRGVLFW 337
Query: 182 DALTAEKVAKWSSNH-----IGAPRWIEHSPAEAAFITCGTDRSVRFWK 225
           D  +   +     +      +         P    F T   D   R WK
Sbjct: 338 DKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWK 386

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 53.9 bits (128), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 44/181 (24%), Positives = 79/181 (43%), Gaps = 25/181 (13%)
Query: 20  HNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGM 79
           HNV SVS  P+GD +++ +      +++V T  C  +           +  VR +  G +
Sbjct: 193 HNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFT----GHREWVRMVRPNQDGTL 248
Query: 80  YVTASKDGAIRLWDGVSANCV------RSIVGA---------HGTAEATSANFTKDQR-- 122
             + S D  +R+W   +  C       R +V              +EAT +   K  +  
Sbjct: 249 IASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPG 308
Query: 123 -FVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIW 181
            F+LS  +D T+K+W+VS+G  +   +G  H       +F+   +F+LS  +    + +W
Sbjct: 309 PFLLSGSRDKTIKMWDVSTGMCLMTLVG--HDNWVRGVLFHSGGKFILSCADDKT-LRVW 365
Query: 182 D 182
           D
Sbjct: 366 D 366

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 43.9 bits (102), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 35/157 (22%), Positives = 66/157 (42%), Gaps = 6/157 (3%)
Query: 68  INQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSC 127
           + +V +     + V+AS+D  I++WD  + +  R++ G   + +  S  F    + + SC
Sbjct: 111 VTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDIS--FDHSGKLLASC 168
Query: 128 GKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAE 187
             D T+KLW+      ++   G  H       + N       S D+    I +W+  T  
Sbjct: 169 SADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKT---IKMWEVQTGY 225
Query: 188 KVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFW 224
            V  + + H    R +  +       +C  D++VR W
Sbjct: 226 CVKTF-TGHREWVRMVRPNQDGTLIASCSNDQTVRVW 261

>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445

Iteration: 1
 Score = 48.1 bits (113), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 44/168 (26%), Positives = 79/168 (47%), Gaps = 18/168 (10%)
Query: 22  VRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYV 81
           VR V +   G  +++G    +  ++D  T  C  +       + G  N+V      G++V
Sbjct: 242 VRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHT-------LQGHTNRVYSLQFDGIHV 292
Query: 82  -TASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSS 140
            + S D +IR+WD  + NC+ ++ G       TS    KD   ++S   DSTVK+W++ +
Sbjct: 293 VSGSLDTSIRVWDVETGNCIHTLTGHQ---SLTSGMELKDN-ILVSGNADSTVKIWDIKT 348
Query: 141 GRLVKQYLGATHTQLRFQAV-FNDTEEFVLSIDEPSNEIVIWDALTAE 187
           G+ ++   G    Q     + FN  + FV++  +    + +WD  T E
Sbjct: 349 GQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGT-VKLWDLKTGE 393

>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed Length = 361

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Query: 66  GAINQVRYSSTG-GMYVTASKDGAIRLWDGVSANCVRSIVGAHG-TAEATSANFTKDQRF 123
            AIN++++      + ++ SKD A+RLW+  +   V    G  G   E  SA++      
Sbjct: 111 NAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEK 170
Query: 124 VLSCGKDSTVKLWEVSSGRLV 144
           ++SCG D ++KLW ++S R++
Sbjct: 171 IMSCGMDHSLKLWRINSKRMM 191

>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated Histone H3k27 Peptide Length = 365

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Query: 66  GAINQVRYSSTG-GMYVTASKDGAIRLWDGVSANCVRSIVGAHG-TAEATSANFTKDQRF 123
            AIN++++      + ++ SKD A+RLW+  +   V    G  G   E  SA++      
Sbjct: 115 NAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEK 174
Query: 124 VLSCGKDSTVKLWEVSSGRLV 144
           ++SCG D ++KLW ++S R++
Sbjct: 175 IMSCGMDHSLKLWRINSKRMM 195

>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form Length = 366

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Query: 66  GAINQVRYSSTG-GMYVTASKDGAIRLWDGVSANCVRSIVGAHG-TAEATSANFTKDQRF 123
            AIN++++      + ++ SKD A+RLW+  +   V    G  G   E  SA++      
Sbjct: 116 NAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEK 175
Query: 124 VLSCGKDSTVKLWEVSSGRLV 144
           ++SCG D ++KLW ++S R++
Sbjct: 176 IMSCGMDHSLKLWRINSKRMM 196

>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated Histone H1k26 Peptide Length = 365

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Query: 66  GAINQVRYSSTG-GMYVTASKDGAIRLWDGVSANCVRSIVGAHG-TAEATSANFTKDQRF 123
            AIN++++      + ++ SKD A+RLW+  +   V    G  G   E  SA++      
Sbjct: 115 NAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEK 174
Query: 124 VLSCGKDSTVKLWEVSSGRLV 144
           ++SCG D ++KLW ++S R++
Sbjct: 175 IMSCGMDHSLKLWRINSKRMM 195

>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The Eed-Ezh2 Polycomb Complex Length = 402

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Query: 66  GAINQVRYSSTG-GMYVTASKDGAIRLWDGVSANCVRSIVGAHG-TAEATSANFTKDQRF 123
            AIN++++      + ++ SKD A+RLW+  +   V    G  G   E  SA++      
Sbjct: 152 NAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEK 211
Query: 124 VLSCGKDSTVKLWEVSSGRLV 144
           ++SCG D ++KLW ++S R++
Sbjct: 212 IMSCGMDHSLKLWRINSKRMM 232

>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/102 (25%), Positives = 48/102 (47%), Gaps = 9/102 (8%)
Query: 81  VTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSS 140
           V+  +D  I++WD  +  C R + G  G+          D+R +++   DSTV++W+V++
Sbjct: 147 VSGLRDNTIKIWDKNTLECKRILTGHTGSVLC----LQYDERVIITGSSDSTVRVWDVNT 202
Query: 141 GRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWD 182
           G ++   +   H +      FN+      S D     I +WD
Sbjct: 203 GEMLNTLIH--HCEAVLHLRFNNGMMVTCSKDR---SIAVWD 239

>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Query: 68  INQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSC 127
           +  V  SS G   ++ S DG +RLWD  +    R  VG   T +  S  F+ D R ++S 
Sbjct: 433 VEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGH--TKDVLSVAFSLDNRQIVSA 490
Query: 128 GKDSTVKLW 136
            +D T+KLW
Sbjct: 491 SRDRTIKLW 499

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 48/224 (21%), Positives = 92/224 (41%), Gaps = 28/224 (12%)
Query: 10  KRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAIN 69
           K   R+   + +VR V+F P G  + + +D     L++ N  Q   +      SV G   
Sbjct: 7   KERNRLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVWG--- 62
Query: 70  QVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGK 129
            V +S  G    +AS D  ++LW+  +   ++++ G   +    +  F+ D + + S   
Sbjct: 63  -VAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVA--FSPDGQTIASASD 118
Query: 130 DSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWD------- 182
           D TVKLW   +G+L++   G  H+   +   F+   + + S  +    + +W+       
Sbjct: 119 DKTVKLWN-RNGQLLQTLTG--HSSSVWGVAFSPDGQTIASASD-DKTVKLWNRNGQLLQ 174
Query: 183 ALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKE 226
            LT    + W          +  SP      +   D++V+ W  
Sbjct: 175 TLTGHSSSVWG---------VAFSPDGQTIASASDDKTVKLWNR 209

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 50/233 (21%), Positives = 98/233 (42%), Gaps = 23/233 (9%)
Query: 7   ATAKRAFRVIQDTHNVRSVSF-HPSGDFLLA-GTDHPIAHLYDVNTFQCYLSANVPEISV 64
           AT K      + +  V    F + S   LLA G++     L+D+N  +C  +        
Sbjct: 694 ATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTM----FGH 749
Query: 65  NGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFV 124
             ++N  R+S    +  + S DG +RLWD  SAN  +SI         +S +  +D   +
Sbjct: 750 TNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFF--LSSEDPPEDVEVI 807
Query: 125 LSC------------GKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSID 172
           + C               + V L+++ +  L+ +     H+ +++          V+++ 
Sbjct: 808 VKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALS 867
Query: 173 EPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWK 225
           +   E  +W+  +  KVA     H+     +  SP  ++F+T   D+++R W+
Sbjct: 868 QYCVE--LWNIDSRLKVAD-CRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWE 917

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 50/233 (21%), Positives = 98/233 (42%), Gaps = 23/233 (9%)
Query: 7   ATAKRAFRVIQDTHNVRSVSF-HPSGDFLLA-GTDHPIAHLYDVNTFQCYLSANVPEISV 64
           AT K      + +  V    F + S   LLA G++     L+D+N  +C  +        
Sbjct: 687 ATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTM----FGH 742
Query: 65  NGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFV 124
             ++N  R+S    +  + S DG +RLWD  SAN  +SI         +S +  +D   +
Sbjct: 743 TNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFF--LSSEDPPEDVEVI 800
Query: 125 LSC------------GKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSID 172
           + C               + V L+++ +  L+ +     H+ +++          V+++ 
Sbjct: 801 VKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALS 860
Query: 173 EPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWK 225
           +   E  +W+  +  KVA     H+     +  SP  ++F+T   D+++R W+
Sbjct: 861 QYCVE--LWNIDSRLKVAD-CRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWE 910

>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/135 (26%), Positives = 68/135 (50%), Gaps = 11/135 (8%)
Query: 22  VRSVSFHPSGDFLLAGT-DHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMY 80
           V  V+   +G+F ++ + DH +  L+++   QC        +     +  V +S      
Sbjct: 70  VSDVALSNNGNFAVSASWDHSL-RLWNLQNGQCQYKF----LGHTKDVLSVAFSPDNRQI 124
Query: 81  VTASKDGAIRLWDGVSANCVRSIV-GAHGTAEATSANFTK--DQRFVLSCGKDSTVKLWE 137
           V+  +D A+R+W+ V   C+ ++  GAH T   +   F+   D   ++S G D+ VK+W+
Sbjct: 125 VSGGRDNALRVWN-VKGECMHTLSRGAH-TDWVSCVRFSPSLDAPVIVSGGWDNLVKVWD 182
Query: 138 VSSGRLVKQYLGATH 152
           +++GRLV    G T+
Sbjct: 183 LATGRLVTDLKGHTN 197

>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2 Length = 425

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/83 (28%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Query: 62  ISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQ 121
           I  +G I+ + ++ T  + ++AS DG +R+W G + N      G   +    SA++  D 
Sbjct: 244 IGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGH--SQSIVSASWVGDD 301
Query: 122 RFVLSCGKDSTVKLWEVSSGRLV 144
           + V+SC  D +V+LW +    L+
Sbjct: 302 K-VISCSMDGSVRLWSLKQNTLL 323

>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/171 (22%), Positives = 75/171 (43%), Gaps = 19/171 (11%)
Query: 65  NGAINQVRYSST-GGMYVTASKDGAIRLWD--------GVSANCVRSIVGAHGTAEATSA 115
           NG + Q+  +     M ++AS+D  I +W         G+    +R    +H  ++    
Sbjct: 38  NGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRG--HSHFVSDVV-- 93
Query: 116 NFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPS 175
             + D +F LS   D T++LW++++G   ++++G  HT+      F+     ++S     
Sbjct: 94  -ISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVG--HTKDVLSVAFSSDNRQIVS-GSRD 149
Query: 176 NEIVIWDALTAEKVAKWSSNHIGAPRWIEHSP--AEAAFITCGTDRSVRFW 224
             I +W+ L   K      +H      +  SP  +    ++CG D+ V+ W
Sbjct: 150 KTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVW 200

>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/171 (22%), Positives = 75/171 (43%), Gaps = 19/171 (11%)
Query: 65  NGAINQVRYSST-GGMYVTASKDGAIRLWD--------GVSANCVRSIVGAHGTAEATSA 115
           NG + Q+  +     M ++AS+D  I +W         G+    +R    +H  ++    
Sbjct: 15  NGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRG--HSHFVSDVV-- 70
Query: 116 NFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPS 175
             + D +F LS   D T++LW++++G   ++++G  HT+      F+     ++S     
Sbjct: 71  -ISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVG--HTKDVLSVAFSSDNRQIVS-GSRD 126
Query: 176 NEIVIWDALTAEKVAKWSSNHIGAPRWIEHSP--AEAAFITCGTDRSVRFW 224
             I +W+ L   K      +H      +  SP  +    ++CG D+ V+ W
Sbjct: 127 KTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVW 177

>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/137 (23%), Positives = 65/137 (47%), Gaps = 13/137 (9%)
Query: 32  DFLLAGTDHPIAHLYD-VNT-FQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAI 89
           ++++ G D  +  +YD +N  F   LS +      +G +  ++Y+  GG+ V+ S D  +
Sbjct: 133 NYVITGADDKMIRVYDSINKKFLLQLSGH------DGGVWALKYAH-GGILVSGSTDRTV 185
Query: 90  RLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLG 149
           R+WD     C     G + T         K+ +++++  +D+T+ +W++     V  + G
Sbjct: 186 RVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDH-G 244
Query: 150 ATHTQLRFQAVFNDTEE 166
             H    +  VF+  EE
Sbjct: 245 EEHD---YPLVFHTPEE 258

>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor Eif3i Complex With Eif3b C-Terminus (655-700) Length = 369

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 35/154 (22%), Positives = 68/154 (44%), Gaps = 30/154 (19%)
Query: 68  INQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSAN-FTKDQRFVLS 126
           + QV+Y+  G +  + SKD +  +W  ++   + ++ G  GT  +   + FTK   + ++
Sbjct: 35  LTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTK---YCVT 91
Query: 127 CGKDSTVKLWEVSSGRLVKQYLGATHTQL--------RFQAVFND--------------- 163
              D ++KLW+VS+G+ V  +      +          F A+ ++               
Sbjct: 92  GSADYSIKLWDVSNGQCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIER 151
Query: 164 ---TEEFVLSIDEPSNEIVIWDALTAEKVAKWSS 194
              T E     +EP ++I+  + L A  VA WS+
Sbjct: 152 DSATHELTKVSEEPIHKIITHEGLDAATVAGWST 185

>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 32/137 (23%), Positives = 64/137 (46%), Gaps = 13/137 (9%)
Query: 32  DFLLAGTDHPIAHLYD-VNT-FQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAI 89
           ++++ G D     +YD +N  F   LS +      +G +  ++Y+  GG+ V+ S D  +
Sbjct: 133 NYVITGADDKXIRVYDSINKKFLLQLSGH------DGGVWALKYAH-GGILVSGSTDRTV 185
Query: 90  RLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLG 149
           R+WD     C     G + T         K+ +++++  +D+T+ +W++     V  + G
Sbjct: 186 RVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDH-G 244
Query: 150 ATHTQLRFQAVFNDTEE 166
             H    +  VF+  EE
Sbjct: 245 EEHD---YPLVFHTPEE 258

>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex Length = 344

Iteration: 1
 Score = 40.4 bits (93), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 41/167 (24%), Positives = 73/167 (43%), Gaps = 13/167 (7%)
Query: 34  LLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWD 93
           +L  +D     L++++  +  + +   +   +  ++ V   S+G   V+ SKD  I++WD
Sbjct: 96  ILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWD 155
Query: 94  GVSANCVRSIVGAHGT-AEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQ------ 146
            ++   V S   AH       +A+  KD  F LSC +D+ + LW+    +   Q      
Sbjct: 156 -LAQQVVLSSYRAHAAQVTCVAASPHKDSVF-LSCSEDNRILLWDTRCPKPASQIGCSAP 213
Query: 147 -YLGAT---HTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKV 189
            YL  +   H Q     VF D    V  +D  S   V+  A+ ++ V
Sbjct: 214 GYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCV 260

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	228
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
3jro_A	753	Fusion protein of protein transport protein SEC13	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	100.0
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	100.0
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	100.0
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	100.0
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.98
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.98
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.97
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.97
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.97
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.96
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.95
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.95
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.95
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.95
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.95
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.95
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.94
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.94
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.94
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.94
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.94
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.93
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.93
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.93
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.93
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.93
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.92
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.92
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.92
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.91
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.91
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.91
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.9
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.9
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.9
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.9
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.9
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.89
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.89
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.89
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.88
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.88
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.87
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.87
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.85
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.85
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.85
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.85
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.83
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.82
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.82
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.82
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.82
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.81
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.81
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.81
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.8
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.8
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.79
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.78
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.78
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.78
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.78
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.77
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.77
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.75
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.74
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.74
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.74
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.73
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.73
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.73
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.72
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.71
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.71
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.71
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.71
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.71
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.69
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.69
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.67
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.66
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.65
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.65
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.64
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.64
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.64
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.61
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.61
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.59
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.59
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.58
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.57
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.56
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.56
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.55
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.54
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.54
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.53
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.51
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.5
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.49
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.48
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	99.48
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.47
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.47
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	99.45
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.45
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.43
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.42
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	99.41
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	99.4
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	99.38
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.34
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.3
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.28
2p4o_A	306	Hypothetical protein; putative lactonase, structur	99.27
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.26
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.26
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.22
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.22
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	99.2
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.16
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	99.15
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	99.13
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	99.13
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.09
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.08
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.02
3v65_B	386	Low-density lipoprotein receptor-related protein;	99.02
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.02
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.02
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	99.0
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.97
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.96
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.92
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.92
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.88
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.88
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	98.85
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.84
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.81
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.79
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.79
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.78
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	98.78
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.78
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.75
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.75
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.74
3kya_A	496	Putative phosphatase; structural genomics, joint c	98.73
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.73
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.71
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.68
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.66
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	98.66
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.65
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.64
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.64
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.63
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.62
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.62
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.61
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.6
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.54
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.53
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.51
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	98.47
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	98.46
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.46
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.46
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.43
3kya_A	496	Putative phosphatase; structural genomics, joint c	98.37
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.36
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	98.35
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	98.29
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.28
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	98.25
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	98.17
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	98.15
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	98.12
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	98.1
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	98.08
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	97.94
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	97.9
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	97.78
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	97.77
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	97.76
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	97.74
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	97.74
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	97.72
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	97.63
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	97.59
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	97.59
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	97.5
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	97.49
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	97.47
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	97.45
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	97.43
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	97.41
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	97.4
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	97.4
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	97.39
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	97.29
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	97.28
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	97.28
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	97.26
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	97.18
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	97.15
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	97.11
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	97.05
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	96.97
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	96.94
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	96.94
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	96.92
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	96.88
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	96.83
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	96.81
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	96.74
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	96.58
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	96.47
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	96.44
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	96.1
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	95.91
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	95.76
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	95.62
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	95.31
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	95.21
3ott_A	758	Two-component system sensor histidine kinase; beta	94.86
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	94.73
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	93.45
3q6k_A	381	43.2 kDa salivary protein; beta propeller, binding	93.44
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	92.3
3ott_A	758	Two-component system sensor histidine kinase; beta	92.25
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	92.03
3zwu_A	592	Alkaline phosphatase PHOX; hydrolase, beta-propell	91.5
1wp5_A	323	Topoisomerase IV; broken beta-propeller, hairpin-i	91.45
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	90.02
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	89.3
4a9v_A	592	PHOX; hydrolase, beta-propeller; 1.10A {Pseudomona	89.2
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	89.15
3uc1_A	327	DNA gyrase subunit A; DNA binding protein, topoiso	88.46
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	88.12
1suu_A	312	DNA gyrase subunit A; topoisomerase,DNA gyrase, be	87.37
3zwu_A	592	Alkaline phosphatase PHOX; hydrolase, beta-propell	87.37
4a9v_A	592	PHOX; hydrolase, beta-propeller; 1.10A {Pseudomona	86.71
3no0_A	276	DNA gyrase subunit A; DNA topology, topoisomerase,	85.37
3f7f_A	729	Nucleoporin NUP120; nuclear pore complex, macromol	82.36

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=1.1e-44  Score=267.62  Aligned_cols=219  Identities=18%  Similarity=0.150  Sum_probs=183.7

Q ss_pred             CCcCCccccceeE--EEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCC
Q 040370            1 FFDFSKATAKRAF--RVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGG   78 (228)
Q Consensus         1 iwd~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~   78 (228)
                      |||+...+.....  ...+|...|++++|+|++++|++|+.|++|++||+++++.+..+..   | ...|.+++|+|++.
T Consensus       107 lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~---h-~~~V~~~~~~~~~~  182 (344)
T 4gqb_B          107 LWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRA---H-AAQVTCVAASPHKD  182 (344)
T ss_dssp             EEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC---C-SSCEEEEEECSSCT
T ss_pred             EEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcC---c-CCceEEEEecCCCC
Confidence            5888766554433  3458999999999999999999999999999999999988776643   3 88999999999875


Q ss_pred             -eEEEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECC-CCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeee
Q 040370           79 -MYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTK-DQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLR  156 (228)
Q Consensus        79 -~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~  156 (228)
                       +|++|+.|+.|++||+++++....+....+...+.+++|+| ++++|++|+.|+.|++||+++++.+..+.+  |...+
T Consensus       183 ~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~--h~~~v  260 (344)
T 4gqb_B          183 SVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAV--HSQCV  260 (344)
T ss_dssp             TEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEEC--CSSCE
T ss_pred             CceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcC--CCCCE
Confidence             78999999999999999999888876655567789999999 567889999999999999999999998887  67789


Q ss_pred             eEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCc-EEEEecCCCCEEEeeec
Q 040370          157 FQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEA-AFITCGTDRSVRFWKEI  227 (228)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~dg~i~vwd~~  227 (228)
                      .+++|+|++..++++++.|+.|++||+++++... + .+|.+.|++++|+|+++ +|+++|.||+|++|++.
T Consensus       261 ~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~-~-~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~  330 (344)
T 4gqb_B          261 TGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFR-S-QAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVP  330 (344)
T ss_dssp             EEEEECSSSSCCEEEEETTSCEEEECTTCCEEEE-E-CCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC
T ss_pred             EEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEE-E-cCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECC
Confidence            9999999986655556669999999999887654 4 68999999999999876 57799999999999974

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=3.2e-44  Score=265.25  Aligned_cols=212  Identities=16%  Similarity=0.222  Sum_probs=180.1

Q ss_pred             eEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEE
Q 040370           12 AFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRL   91 (228)
Q Consensus        12 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i   91 (228)
                      ......|...|.+++|+|++ .|++|+.||.|+|||+++++...........|.+.|++++|+|++++|++|+.|++|++
T Consensus        75 ~~~~~~~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~i  153 (344)
T 4gqb_B           75 CSAGVQTEAGVADLTWVGER-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKV  153 (344)
T ss_dssp             CSEEEEESSCEEEEEEETTT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred             eeeeeccCCCEEEEEEeCCC-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEE
Confidence            34445678899999999985 68899999999999999987655544433345899999999999999999999999999


Q ss_pred             EeCCCCceeeEEecccccceeEEEEECCCCC-EEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEE
Q 040370           92 WDGVSANCVRSIVGAHGTAEATSANFTKDQR-FVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLS  170 (228)
Q Consensus        92 wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (228)
                      ||+++++.+..+..|  ...|.+++|+|++. +|++++.|++|++||+++++....+....+...+.++.|+|++..+++
T Consensus       154 wd~~~~~~~~~~~~h--~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~  231 (344)
T 4gqb_B          154 WDLAQQVVLSSYRAH--AAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFV  231 (344)
T ss_dssp             EETTTTEEEEEECCC--SSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEE
T ss_pred             EECCCCcEEEEEcCc--CCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceE
Confidence            999999999998876  77999999999874 789999999999999999998888766556667889999998776666


Q ss_pred             eeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCC-cEEEEecCCCCEEEeeec
Q 040370          171 IDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAE-AAFITCGTDRSVRFWKEI  227 (228)
Q Consensus       171 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~dg~i~vwd~~  227 (228)
                      +++.|+.|++||+++++.+..+ .+|...|++++|+|++ ++|++|+.|++|+|||+.
T Consensus       232 sg~~dg~v~~wd~~~~~~~~~~-~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~  288 (344)
T 4gqb_B          232 FGDENGTVSLVDTKSTSCVLSS-AVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSS  288 (344)
T ss_dssp             EEETTSEEEEEESCC--CCEEE-ECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTT
T ss_pred             EeccCCcEEEEECCCCcEEEEE-cCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECC
Confidence            6667899999999999998888 7899999999999987 579999999999999964

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=1.8e-43  Score=259.25  Aligned_cols=215  Identities=17%  Similarity=0.342  Sum_probs=191.9

Q ss_pred             CCcCCccccceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeE
Q 040370            1 FFDFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMY   80 (228)
Q Consensus         1 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l   80 (228)
                      |||+...  +....+..|...+.+++|+|++++|++|+.|+.|++|++++++....+...    ...|.+++|+|++++|
T Consensus       106 lWd~~~~--~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~----~~~v~~~~~spdg~~l  179 (321)
T 3ow8_A          106 LWDLENG--KQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTR----GKFILSIAYSPDGKYL  179 (321)
T ss_dssp             EEETTTT--EEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECS----SSCEEEEEECTTSSEE
T ss_pred             EEECCCC--CEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCC----CceEEEEEECCCCCEE
Confidence            4777644  344455578889999999999999999999999999999998876554432    6789999999999999


Q ss_pred             EEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEE
Q 040370           81 VTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAV  160 (228)
Q Consensus        81 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~  160 (228)
                      ++|+.||.|++||+++++.+..+..+  ..+|.+++|+|++++|++++.|+.|++||+++++....+.+  |...+..++
T Consensus       180 asg~~dg~i~iwd~~~~~~~~~~~~h--~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~--h~~~v~~~~  255 (321)
T 3ow8_A          180 ASGAIDGIINIFDIATGKLLHTLEGH--AMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSG--HASWVLNVA  255 (321)
T ss_dssp             EEEETTSCEEEEETTTTEEEEEECCC--SSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECC--CSSCEEEEE
T ss_pred             EEEcCCCeEEEEECCCCcEEEEEccc--CCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcC--CCCceEEEE
Confidence            99999999999999999998888776  67899999999999999999999999999999988888876  677889999


Q ss_pred             ECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370          161 FNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEI  227 (228)
Q Consensus       161 ~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~  227 (228)
                      |+|++.++++++. |+.|++||+++++.+..+ .+|...|.+++|+|++++|++++.||.|++||..
T Consensus       256 ~sp~~~~l~s~s~-D~~v~iwd~~~~~~~~~~-~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p  320 (321)
T 3ow8_A          256 FCPDDTHFVSSSS-DKSVKVWDVGTRTCVHTF-FDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP  320 (321)
T ss_dssp             ECTTSSEEEEEET-TSCEEEEETTTTEEEEEE-CCCSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred             ECCCCCEEEEEeC-CCcEEEEeCCCCEEEEEE-cCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence            9999999888666 899999999999998888 7899999999999999999999999999999975

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=3e-43  Score=258.07  Aligned_cols=217  Identities=15%  Similarity=0.236  Sum_probs=193.8

Q ss_pred             CCcCCccccceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeE
Q 040370            1 FFDFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMY   80 (228)
Q Consensus         1 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l   80 (228)
                      |||+..........+.+|...|.+++|+|++.++++++.|+.|++||+.+++....+...    ...+.+++|+|++++|
T Consensus        62 vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~----~~~~~~~~~spdg~~l  137 (321)
T 3ow8_A           62 VWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAG----PVDAWTLAFSPDSQYL  137 (321)
T ss_dssp             EEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECC----TTCCCCEEECTTSSEE
T ss_pred             EEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCC----CccEEEEEECCCCCEE
Confidence            477765554455567799999999999999999999999999999999999877665432    6678999999999999


Q ss_pred             EEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEE
Q 040370           81 VTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAV  160 (228)
Q Consensus        81 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~  160 (228)
                      ++|+.||.|++||+++++....+..+  ...+.+++|+|++++|++|+.|+.|++||+++++.+..+.+  +...+.++.
T Consensus       138 ~~g~~dg~v~i~~~~~~~~~~~~~~~--~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~--h~~~v~~l~  213 (321)
T 3ow8_A          138 ATGTHVGKVNIFGVESGKKEYSLDTR--GKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEG--HAMPIRSLT  213 (321)
T ss_dssp             EEECTTSEEEEEETTTCSEEEEEECS--SSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC--CSSCCCEEE
T ss_pred             EEEcCCCcEEEEEcCCCceeEEecCC--CceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcc--cCCceeEEE
Confidence            99999999999999999988887765  66899999999999999999999999999999999888876  667889999


Q ss_pred             ECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370          161 FNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEI  227 (228)
Q Consensus       161 ~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~  227 (228)
                      |+|++.++++++. |+.|++||+++++....+ .+|...|.+++|+|++++|++++.|+.|++||+.
T Consensus       214 ~spd~~~l~s~s~-dg~i~iwd~~~~~~~~~~-~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~  278 (321)
T 3ow8_A          214 FSPDSQLLVTASD-DGYIKIYDVQHANLAGTL-SGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVG  278 (321)
T ss_dssp             ECTTSCEEEEECT-TSCEEEEETTTCCEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred             EcCCCCEEEEEcC-CCeEEEEECCCcceeEEE-cCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCC
Confidence            9999998887655 899999999999888877 7899999999999999999999999999999964

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=1.9e-43  Score=262.68  Aligned_cols=219  Identities=16%  Similarity=0.184  Sum_probs=183.6

Q ss_pred             CCcCCccccce--eEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCC
Q 040370            1 FFDFSKATAKR--AFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGG   78 (228)
Q Consensus         1 iwd~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~   78 (228)
                      |||+.......  .+...+|...|++++|+|++++|++|+.|+.|++||+++++....+..   | ...|++++|+|++.
T Consensus       119 lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~---h-~~~v~~v~~s~~~~  194 (357)
T 4g56_B          119 LWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNA---H-SSEVNCVAACPGKD  194 (357)
T ss_dssp             EC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECC---C-SSCEEEEEECTTCS
T ss_pred             EeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcC---C-CCCEEEEEEccCCC
Confidence            58887654433  344558999999999999999999999999999999999987776653   2 78899999999875


Q ss_pred             -eEEEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCC-CCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeee
Q 040370           79 -MYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKD-QRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLR  156 (228)
Q Consensus        79 -~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~  156 (228)
                       ++++++.||.|++||+++++....+....+...+.+++|+|+ +.+|++|+.|+.|++||+++++.+..+..  +...+
T Consensus       195 ~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~--~~~~v  272 (357)
T 4g56_B          195 TIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAV--HSQNI  272 (357)
T ss_dssp             SCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECC--CSSCE
T ss_pred             ceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEec--cceeE
Confidence             789999999999999999988877766555778999999996 56889999999999999999998888876  66788


Q ss_pred             eEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCC-CCcEEEEecCCCCEEEeeec
Q 040370          157 FQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSP-AEAAFITCGTDRSVRFWKEI  227 (228)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~vwd~~  227 (228)
                      .+++|+|++..++++++.|+.|++||+++++.+..+  +|.+.|++++|+| ++.+|+|+|.||.|++|++.
T Consensus       273 ~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~--~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~  342 (357)
T 4g56_B          273 TGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL--SHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLP  342 (357)
T ss_dssp             EEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC--CCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC
T ss_pred             EEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC--CCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECC
Confidence            999999998665555666899999999998877654  8999999999999 79999999999999999974

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=3.2e-42  Score=250.93  Aligned_cols=208  Identities=17%  Similarity=0.276  Sum_probs=181.4

Q ss_pred             eeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEE
Q 040370           11 RAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIR   90 (228)
Q Consensus        11 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~   90 (228)
                      ....+.+|...|++++|+|++++|++|+.||.|++||+++++....+...    ..+|.+++|+|++++|++|+.|+.|+
T Consensus         5 ~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~s~s~d~~i~   80 (304)
T 2ynn_A            5 IKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVT----ETPVRAGKFIARKNWIIVGSDDFRIR   80 (304)
T ss_dssp             CEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECC----SSCEEEEEEEGGGTEEEEEETTSEEE
T ss_pred             eEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeecc----CCcEEEEEEeCCCCEEEEECCCCEEE
Confidence            34556789999999999999999999999999999999998876655432    77899999999999999999999999


Q ss_pred             EEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCe-eEEEEecceeeeeeeEEEECCCC-cEE
Q 040370           91 LWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGR-LVKQYLGATHTQLRFQAVFNDTE-EFV  168 (228)
Q Consensus        91 iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~  168 (228)
                      +||+++++.+..+..|  ...|.+++|+|++++|++|+.|++|++||++++. ....+.+  |...+.++.|+|.+ ..+
T Consensus        81 vwd~~~~~~~~~~~~h--~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~--h~~~v~~v~~~p~~~~~l  156 (304)
T 2ynn_A           81 VFNYNTGEKVVDFEAH--PDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEG--HEHFVMCVAFNPKDPSTF  156 (304)
T ss_dssp             EEETTTCCEEEEEECC--SSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECC--CCSCEEEEEECTTCTTEE
T ss_pred             EEECCCCcEEEEEeCC--CCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcc--cCCcEEEEEECCCCCCEE
Confidence            9999999999988876  7789999999999999999999999999999874 4455555  67789999999954 555


Q ss_pred             EEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCC--CCcEEEEecCCCCEEEeeec
Q 040370          169 LSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSP--AEAAFITCGTDRSVRFWKEI  227 (228)
Q Consensus       169 ~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~s~~~dg~i~vwd~~  227 (228)
                      ++ ++.|+.|++||++++.....+..+|...+..+.|+|  ++.+|++++.|+.|++||+.
T Consensus       157 ~s-gs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~  216 (304)
T 2ynn_A          157 AS-GCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQ  216 (304)
T ss_dssp             EE-EETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETT
T ss_pred             EE-EeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCC
Confidence            55 555899999999988887777667888999999987  77899999999999999964

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=3.7e-42  Score=254.24  Aligned_cols=216  Identities=14%  Similarity=0.275  Sum_probs=188.5

Q ss_pred             CCcCCcccc--ceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCC
Q 040370            1 FFDFSKATA--KRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGG   78 (228)
Q Consensus         1 iwd~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~   78 (228)
                      +||+.....  .....+.+|...|.++.|++++. +++++.|+.|++||+++++....+..   | .+.|.+++|+|+++
T Consensus       123 iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~~~~---h-~~~v~~~~~~~~~~  197 (340)
T 1got_B          123 IYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTG---H-TGDVMSLSLAPDTR  197 (340)
T ss_dssp             EEETTTCSBSCEEEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEEEECC---C-SSCEEEEEECTTSS
T ss_pred             EEECccCCCcceeEEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEEEEcC---C-CCceEEEEECCCCC
Confidence            466654332  33455668999999999998775 88999999999999999987765543   3 78899999999999


Q ss_pred             eEEEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeE
Q 040370           79 MYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQ  158 (228)
Q Consensus        79 ~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~  158 (228)
                      ++++|+.||.|++||+++++....+..|  ...|.+++|+|++++|++|+.|+.|++||+++++.+..+....+...+.+
T Consensus       198 ~l~sg~~d~~v~~wd~~~~~~~~~~~~h--~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~  275 (340)
T 1got_B          198 LFVSGACDASAKLWDVREGMCRQTFTGH--ESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITS  275 (340)
T ss_dssp             EEEEEETTSCEEEEETTTCSEEEEECCC--SSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEE
T ss_pred             EEEEEeCCCcEEEEECCCCeeEEEEcCC--cCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEE
Confidence            9999999999999999999988888776  67899999999999999999999999999999888777754434456889


Q ss_pred             EEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEee
Q 040370          159 AVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWK  225 (228)
Q Consensus       159 ~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd  225 (228)
                      +.|+|++.++++++. |+.|++||+.+++....+ .+|.++|.+++|+|++.+|++|+.||.|++||
T Consensus       276 ~~~s~~g~~l~~g~~-d~~i~vwd~~~~~~~~~~-~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd  340 (340)
T 1got_B          276 VSFSKSGRLLLAGYD-DFNCNVWDALKADRAGVL-AGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             EEECTTSSEEEEEET-TSEEEEEETTTCCEEEEE-ECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             EEECCCCCEEEEECC-CCeEEEEEcccCcEeeEe-ecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence            999999999988766 899999999999888877 79999999999999999999999999999997

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=3.3e-42  Score=250.85  Aligned_cols=216  Identities=16%  Similarity=0.266  Sum_probs=181.7

Q ss_pred             CCcCCccccceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeE
Q 040370            1 FFDFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMY   80 (228)
Q Consensus         1 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l   80 (228)
                      |||+...  .....+..|..+|.+++|+|++++|++|+.|+.|++||+.+++....+..   | ...|.+++|+|++++|
T Consensus        39 lWd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~---h-~~~v~~~~~~~~~~~l  112 (304)
T 2ynn_A           39 LWNYETQ--VEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEA---H-PDYIRSIAVHPTKPYV  112 (304)
T ss_dssp             EEETTTT--EEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEEC---C-SSCEEEEEECSSSSEE
T ss_pred             EEECCCC--ceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEeC---C-CCcEEEEEEcCCCCEE
Confidence            5777643  34455667999999999999999999999999999999999987765543   3 8899999999999999


Q ss_pred             EEEecCCeEEEEeCCCCcee-eEEecccccceeEEEEECC-CCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeE
Q 040370           81 VTASKDGAIRLWDGVSANCV-RSIVGAHGTAEATSANFTK-DQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQ  158 (228)
Q Consensus        81 ~~~~~dg~v~iwd~~~~~~~-~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~  158 (228)
                      ++|+.||+|++||++++... ..+..|  ...|.+++|+| ++.+|++|+.|++|++||++++.....+... +...+..
T Consensus       113 ~sgs~D~~v~lWd~~~~~~~~~~~~~h--~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~-~~~~v~~  189 (304)
T 2ynn_A          113 LSGSDDLTVKLWNWENNWALEQTFEGH--EHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTG-QERGVNY  189 (304)
T ss_dssp             EEEETTSCEEEEEGGGTTEEEEEECCC--CSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECC-CTTCEEE
T ss_pred             EEECCCCeEEEEECCCCcchhhhhccc--CCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccC-CcCcEEE
Confidence            99999999999999887544 445554  77899999999 6789999999999999999887766655432 3345566


Q ss_pred             EEECC--CCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370          159 AVFND--TEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEI  227 (228)
Q Consensus       159 ~~~~~--~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~  227 (228)
                      +.+.|  ++.++++++. |+.|++||+++++.+..+ .+|...|.+++|+|++++|++|+.||.|++||+.
T Consensus       190 ~~~~~~~~~~~l~s~s~-D~~i~iWd~~~~~~~~~~-~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~  258 (304)
T 2ynn_A          190 VDYYPLPDKPYMITASD-DLTIKIWDYQTKSCVATL-EGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSS  258 (304)
T ss_dssp             EEECCSTTCCEEEEEET-TSEEEEEETTTTEEEEEE-ECCSSCEEEEEECSSSSEEEEEETTSCEEEEETT
T ss_pred             EEEEEcCCCCEEEEEcC-CCeEEEEeCCCCccceee-CCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECC
Confidence            67765  5667776555 899999999999988888 7899999999999999999999999999999963

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=5.3e-42  Score=259.31  Aligned_cols=215  Identities=21%  Similarity=0.404  Sum_probs=190.3

Q ss_pred             CCcCCccccceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeE
Q 040370            1 FFDFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMY   80 (228)
Q Consensus         1 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l   80 (228)
                      |||+...  .....+.+|...|.+++|+|++++|++|+.|+.|++||+.++.+...+..   | ...|.++.|+|+++++
T Consensus       176 iwd~~~~--~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~---h-~~~v~~~~~~~~g~~l  249 (410)
T 1vyh_C          176 LWDFQGF--ECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTG---H-REWVRMVRPNQDGTLI  249 (410)
T ss_dssp             EEETTSS--CEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEEC---C-SSCEEEEEECTTSSEE
T ss_pred             EEeCCCC--ceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeC---C-CccEEEEEECCCCCEE
Confidence            4777643  33444568999999999999999999999999999999999987765542   3 7889999999999999


Q ss_pred             EEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCC--------------------CCEEEEeeCCCeEEEEEccC
Q 040370           81 VTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKD--------------------QRFVLSCGKDSTVKLWEVSS  140 (228)
Q Consensus        81 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~--------------------~~~l~~~~~d~~i~~wd~~~  140 (228)
                      ++|+.|+.|++||+++++....+..|  ...|.+++|+|+                    +.+|++|+.|+.|++||+++
T Consensus       250 ~s~s~D~~v~vwd~~~~~~~~~~~~h--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~  327 (410)
T 1vyh_C          250 ASCSNDQTVRVWVVATKECKAELREH--RHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVST  327 (410)
T ss_dssp             EEEETTSCEEEEETTTCCEEEEECCC--SSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTT
T ss_pred             EEEcCCCeEEEEECCCCceeeEecCC--CceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCC
Confidence            99999999999999999988888776  678999999996                    66899999999999999999


Q ss_pred             CeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCC
Q 040370          141 GRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRS  220 (228)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~  220 (228)
                      ++.+..+.+  |...+.++.|+|++.++++++. |+.|++||+++++.+..+ .+|...|++++|+|++.+|++|+.||.
T Consensus       328 ~~~~~~~~~--h~~~v~~v~~~~~g~~l~s~s~-D~~i~vwd~~~~~~~~~~-~~h~~~v~~l~~~~~~~~l~sgs~D~~  403 (410)
T 1vyh_C          328 GMCLMTLVG--HDNWVRGVLFHSGGKFILSCAD-DKTLRVWDYKNKRCMKTL-NAHEHFVTSLDFHKTAPYVVTGSVDQT  403 (410)
T ss_dssp             TEEEEEEEC--CSSCEEEEEECSSSSCEEEEET-TTEEEEECCTTSCCCEEE-ECCSSCEEEEEECSSSSCEEEEETTSE
T ss_pred             CceEEEEEC--CCCcEEEEEEcCCCCEEEEEeC-CCeEEEEECCCCceEEEE-cCCCCcEEEEEEcCCCCEEEEEeCCCc
Confidence            999988877  6778899999999999998666 899999999999988887 789999999999999999999999999


Q ss_pred             EEEeeec
Q 040370          221 VRFWKEI  227 (228)
Q Consensus       221 i~vwd~~  227 (228)
                      |++|+++
T Consensus       404 i~vW~~r  410 (410)
T 1vyh_C          404 VKVWECR  410 (410)
T ss_dssp             EEEEC--
T ss_pred             EEEEeCC
Confidence            9999964

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=6e-42  Score=259.01  Aligned_cols=215  Identities=21%  Similarity=0.404  Sum_probs=189.8

Q ss_pred             CCcCCccccceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeE
Q 040370            1 FFDFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMY   80 (228)
Q Consensus         1 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l   80 (228)
                      |||+....  ....+.+|...|.+++|+|++++|++|+.|++|++||+.+++++..+..   | ...|.+++|+|+++++
T Consensus       134 vwd~~~~~--~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~---h-~~~V~~v~~~p~~~~l  207 (410)
T 1vyh_C          134 VWDYETGD--FERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHG---H-DHNVSSVSIMPNGDHI  207 (410)
T ss_dssp             EEETTTCC--CCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCC---C-SSCEEEEEECSSSSEE
T ss_pred             EEECCCCc--EEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcC---C-CCCEEEEEEeCCCCEE
Confidence            57777544  3445668999999999999999999999999999999999887665542   3 7889999999999999


Q ss_pred             EEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEE
Q 040370           81 VTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAV  160 (228)
Q Consensus        81 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~  160 (228)
                      ++|+.|+.|++||++++..+..+..|  ...+.++.++|++.++++|+.|+.|++||+++++....+..  |...+.++.
T Consensus       208 ~s~s~D~~i~~wd~~~~~~~~~~~~h--~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~--h~~~v~~~~  283 (410)
T 1vyh_C          208 VSASRDKTIKMWEVQTGYCVKTFTGH--REWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELRE--HRHVVECIS  283 (410)
T ss_dssp             EEEETTSEEEEEETTTCCEEEEEECC--SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECC--CSSCEEEEE
T ss_pred             EEEeCCCeEEEEECCCCcEEEEEeCC--CccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecC--CCceEEEEE
Confidence            99999999999999999999888876  67899999999999999999999999999999988888866  667788999


Q ss_pred             ECCC--------------------CcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCC
Q 040370          161 FNDT--------------------EEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRS  220 (228)
Q Consensus       161 ~~~~--------------------~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~  220 (228)
                      |+|+                    +.++++ ++.|+.|++||+++++.+..+ .+|...|.+++|+|++++|++|+.||.
T Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~g~~l~s-gs~D~~i~iwd~~~~~~~~~~-~~h~~~v~~v~~~~~g~~l~s~s~D~~  361 (410)
T 1vyh_C          284 WAPESSYSSISEATGSETKKSGKPGPFLLS-GSRDKTIKMWDVSTGMCLMTL-VGHDNWVRGVLFHSGGKFILSCADDKT  361 (410)
T ss_dssp             ECCSCGGGGGGGCCSCC-------CCEEEE-EETTSEEEEEETTTTEEEEEE-ECCSSCEEEEEECSSSSCEEEEETTTE
T ss_pred             EcCcccccchhhhccccccccCCCCCEEEE-EeCCCeEEEEECCCCceEEEE-ECCCCcEEEEEEcCCCCEEEEEeCCCe
Confidence            9986                    445655 455899999999999988887 689999999999999999999999999


Q ss_pred             EEEeeec
Q 040370          221 VRFWKEI  227 (228)
Q Consensus       221 i~vwd~~  227 (228)
                      |++||+.
T Consensus       362 i~vwd~~  368 (410)
T 1vyh_C          362 LRVWDYK  368 (410)
T ss_dssp             EEEECCT
T ss_pred             EEEEECC
Confidence            9999963

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=2.7e-41  Score=250.82  Aligned_cols=207  Identities=20%  Similarity=0.292  Sum_probs=184.3

Q ss_pred             eeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCC--CCCeEEEEecCCe
Q 040370           11 RAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSS--TGGMYVTASKDGA   88 (228)
Q Consensus        11 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~~dg~   88 (228)
                      ....+..|...|.+++|+|++..|++++.|++|++||+++++....+..   | ...|.+++|+|  ++++|++|+.||.
T Consensus       146 ~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~---h-~~~v~~~~~~~~~~g~~l~sgs~Dg~  221 (354)
T 2pbi_B          146 KKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHG---H-GADVLCLDLAPSETGNTFVSGGCDKK  221 (354)
T ss_dssp             GCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEEC---C-SSCEEEEEECCCSSCCEEEEEETTSC
T ss_pred             cceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcC---C-CCCeEEEEEEeCCCCCEEEEEeCCCe
Confidence            4455668999999999999999999999999999999999987665543   3 78899999987  4689999999999


Q ss_pred             EEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEE
Q 040370           89 IRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFV  168 (228)
Q Consensus        89 v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (228)
                      |++||+++++.+..+..|  ...|.+++|+|++++|++++.|++|++||++.++.+..+........+..+.|+|++.++
T Consensus       222 v~~wd~~~~~~~~~~~~h--~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l  299 (354)
T 2pbi_B          222 AMVWDMRSGQCVQAFETH--ESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLL  299 (354)
T ss_dssp             EEEEETTTCCEEEEECCC--SSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEE
T ss_pred             EEEEECCCCcEEEEecCC--CCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEE
Confidence            999999999998888776  778999999999999999999999999999998877776554444567889999999998


Q ss_pred             EEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEee
Q 040370          169 LSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWK  225 (228)
Q Consensus       169 ~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd  225 (228)
                      ++++. |+.|++||+.+++.+..+ .+|.+.|.+++|+|++++|++|+.||.|++|+
T Consensus       300 ~~g~~-d~~i~vwd~~~~~~~~~l-~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          300 FAGYN-DYTINVWDVLKGSRVSIL-FGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA  354 (354)
T ss_dssp             EEEET-TSCEEEEETTTCSEEEEE-CCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred             EEEEC-CCcEEEEECCCCceEEEE-ECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence            88666 899999999999988877 79999999999999999999999999999996

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=2.3e-41  Score=250.43  Aligned_cols=210  Identities=20%  Similarity=0.360  Sum_probs=176.6

Q ss_pred             ceeEEEeecCc-ceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCe
Q 040370           10 KRAFRVIQDTH-NVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGA   88 (228)
Q Consensus        10 ~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~   88 (228)
                      ....++.+|.. .|.+++|+|++++||+|+.|+.|+|||++++..........+| ...|.+++|+|++++|++|+.|+.
T Consensus         6 ~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h-~~~v~~~~~sp~g~~l~s~s~D~~   84 (345)
T 3fm0_A            6 VLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGH-QRTVRKVAWSPCGNYLASASFDAT   84 (345)
T ss_dssp             EEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSC-SSCEEEEEECTTSSEEEEEETTSC
T ss_pred             EEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeecccc-CCcEEEEEECCCCCEEEEEECCCc
Confidence            34455668887 9999999999999999999999999999987654333333334 889999999999999999999999


Q ss_pred             EEEEeCCCCc--eeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCee---EEEEecceeeeeeeEEEECC
Q 040370           89 IRLWDGVSAN--CVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRL---VKQYLGATHTQLRFQAVFND  163 (228)
Q Consensus        89 v~iwd~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~---~~~~~~~~~~~~~~~~~~~~  163 (228)
                      +++||++.+.  ....+..|  ...|.+++|+|++++|++++.|+.|++||++++..   +..+..  |...+..+.|+|
T Consensus        85 v~iw~~~~~~~~~~~~~~~h--~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~--h~~~v~~~~~~p  160 (345)
T 3fm0_A           85 TCIWKKNQDDFECVTTLEGH--ENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNS--HTQDVKHVVWHP  160 (345)
T ss_dssp             EEEEEECCC-EEEEEEECCC--SSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECC--CCSCEEEEEECS
T ss_pred             EEEEEccCCCeEEEEEccCC--CCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecC--cCCCeEEEEECC
Confidence            9999988764  45555554  77999999999999999999999999999987643   334433  677889999999


Q ss_pred             CCcEEEEeeCCCCeEEEEEcCCccee--EEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeee
Q 040370          164 TEEFVLSIDEPSNEIVIWDALTAEKV--AKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKE  226 (228)
Q Consensus       164 ~~~~~~~~~~~d~~i~i~d~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~  226 (228)
                      ++.++++++. |+.|++||.++++..  ..+ .+|...|.+++|+|++++|++++.|+.|++||.
T Consensus       161 ~~~~l~s~s~-d~~i~~w~~~~~~~~~~~~~-~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~  223 (345)
T 3fm0_A          161 SQELLASASY-DDTVKLYREEEDDWVCCATL-EGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQ  223 (345)
T ss_dssp             SSSCEEEEET-TSCEEEEEEETTEEEEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSCEEEEEE
T ss_pred             CCCEEEEEeC-CCcEEEEEecCCCEEEEEEe-cCCCCceEEEEECCCCCEEEEEeCCCeEEEecc
Confidence            9999888666 899999999877533  344 789999999999999999999999999999996

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=9.8e-41  Score=243.85  Aligned_cols=210  Identities=20%  Similarity=0.408  Sum_probs=188.8

Q ss_pred             cceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCe
Q 040370            9 AKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGA   88 (228)
Q Consensus         9 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~   88 (228)
                      ......+.+|..+|++++|+|++++|++|+.||.|++|++.+++....+..   | ...|.+++|+|++++|++|+.||.
T Consensus        13 ~~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~---h-~~~v~~~~~~~~~~~l~s~~~d~~   88 (312)
T 4ery_A           13 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISG---H-KLGISDVAWSSDSNLLVSASDDKT   88 (312)
T ss_dssp             CEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECC---C-SSCEEEEEECTTSSEEEEEETTSE
T ss_pred             ceeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhcc---C-CCceEEEEEcCCCCEEEEECCCCE
Confidence            344566778999999999999999999999999999999998887655542   2 788999999999999999999999


Q ss_pred             EEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEE
Q 040370           89 IRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFV  168 (228)
Q Consensus        89 v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (228)
                      |++||+++++.+..+..+  ...|.+++|+|++++|++++.|+.|++||+++++.+..+..  +...+..+.|+|++.++
T Consensus        89 i~vwd~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l  164 (312)
T 4ery_A           89 LKIWDVSSGKCLKTLKGH--SNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPA--HSDPVSAVHFNRDGSLI  164 (312)
T ss_dssp             EEEEETTTCCEEEEEECC--SSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECC--CSSCEEEEEECTTSSEE
T ss_pred             EEEEECCCCcEEEEEcCC--CCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecC--CCCcEEEEEEcCCCCEE
Confidence            999999999998888876  77899999999999999999999999999999988888766  66778999999999988


Q ss_pred             EEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370          169 LSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEI  227 (228)
Q Consensus       169 ~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~  227 (228)
                      ++++. |+.|++||+++++.+..+...+..++..++|+|++++|++++.||.|++||+.
T Consensus       165 ~~~~~-d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~  222 (312)
T 4ery_A          165 VSSSY-DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS  222 (312)
T ss_dssp             EEEET-TSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETT
T ss_pred             EEEeC-CCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECC
Confidence            88666 89999999999998888766778889999999999999999999999999974

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=3.3e-40  Score=243.81  Aligned_cols=207  Identities=15%  Similarity=0.258  Sum_probs=182.3

Q ss_pred             ceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeE
Q 040370           10 KRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAI   89 (228)
Q Consensus        10 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v   89 (228)
                      +....+.+|..+|.+++|+|++++|++|+.||.|++||+.+++........    ...|.+++|+|+++++++|+.|+.+
T Consensus        46 ~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~----~~~v~~~~~s~~~~~l~s~~~d~~v  121 (340)
T 1got_B           46 RTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLR----SSWVMTCAYAPSGNYVACGGLDNIC  121 (340)
T ss_dssp             CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECS----SSCEEEEEECTTSSEEEEEETTCEE
T ss_pred             hhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecC----CccEEEEEECCCCCEEEEEeCCCeE
Confidence            445567789999999999999999999999999999999998876655432    7789999999999999999999999


Q ss_pred             EEEeCCCCc----eeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCC
Q 040370           90 RLWDGVSAN----CVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTE  165 (228)
Q Consensus        90 ~iwd~~~~~----~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (228)
                      ++||+.+++    ....+..|  ...+.++.|++++. +++++.|+.|++||+++++.+..+.+  |...+.++.|+|++
T Consensus       122 ~iw~~~~~~~~~~~~~~~~~h--~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~~~~--h~~~v~~~~~~~~~  196 (340)
T 1got_B          122 SIYNLKTREGNVRVSRELAGH--TGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTG--HTGDVMSLSLAPDT  196 (340)
T ss_dssp             EEEETTTCSBSCEEEEEEECC--SSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEEEECC--CSSCEEEEEECTTS
T ss_pred             EEEECccCCCcceeEEEecCC--CccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEEEEcC--CCCceEEEEECCCC
Confidence            999998753    33445544  77899999998775 88999999999999999999888876  67788999999999


Q ss_pred             cEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370          166 EFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEI  227 (228)
Q Consensus       166 ~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~  227 (228)
                      .++++++. |+.|++||++++.....+ .+|...|.+++|+|++++|++|+.||.|++||+.
T Consensus       197 ~~l~sg~~-d~~v~~wd~~~~~~~~~~-~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~  256 (340)
T 1got_B          197 RLFVSGAC-DASAKLWDVREGMCRQTF-TGHESDINAICFFPNGNAFATGSDDATCRLFDLR  256 (340)
T ss_dssp             SEEEEEET-TSCEEEEETTTCSEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred             CEEEEEeC-CCcEEEEECCCCeeEEEE-cCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECC
Confidence            98887665 899999999999988887 7899999999999999999999999999999974

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=1.5e-41  Score=252.45  Aligned_cols=212  Identities=13%  Similarity=0.207  Sum_probs=176.3

Q ss_pred             eEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEE
Q 040370           12 AFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRL   91 (228)
Q Consensus        12 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i   91 (228)
                      .....+|...|.+++|+|++.+ ++++.||+|+|||+.+++...........|...|++++|+|++++|++|+.||.|++
T Consensus        87 ~~~~~~~~~~V~~~~~s~d~~~-l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~i  165 (357)
T 4g56_B           87 CTAGVQTEAGVTDVAWVSEKGI-LVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKV  165 (357)
T ss_dssp             CSEEEECSSCEEEEEEETTTEE-EEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEE
T ss_pred             ecccCCCCCCEEEEEEcCCCCE-EEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEE
Confidence            4456689999999999999764 567789999999999887655444333344889999999999999999999999999


Q ss_pred             EeCCCCceeeEEecccccceeEEEEECCCCC-EEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEE
Q 040370           92 WDGVSANCVRSIVGAHGTAEATSANFTKDQR-FVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLS  170 (228)
Q Consensus        92 wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (228)
                      ||+++++.+..+..|  ...|.+++|+|++. ++++++.|+.|++||+++++....+....+...+.++.|+|++..+++
T Consensus       166 wd~~~~~~~~~~~~h--~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la  243 (357)
T 4g56_B          166 WDLSQKAVLKSYNAH--SSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFA  243 (357)
T ss_dssp             EETTTTEEEEEECCC--SSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEE
T ss_pred             EECCCCcEEEEEcCC--CCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEE
Confidence            999999999988876  77899999999875 789999999999999999888777766556777899999999876666


Q ss_pred             eeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCC-cEEEEecCCCCEEEeeec
Q 040370          171 IDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAE-AAFITCGTDRSVRFWKEI  227 (228)
Q Consensus       171 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~dg~i~vwd~~  227 (228)
                      +++.|+.|++||+++++....+ .+|...|++++|+|++ ++|++|+.|++|+|||+.
T Consensus       244 ~g~~d~~i~~wd~~~~~~~~~~-~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~  300 (357)
T 4g56_B          244 CGDETGNVSLVNIKNPDSAQTS-AVHSQNITGLAYSYHSSPFLASISEDCTVAVLDAD  300 (357)
T ss_dssp             EEESSSCEEEEESSCGGGCEEE-CCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTT
T ss_pred             EeecccceeEEECCCCcEeEEE-eccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECC
Confidence            6667899999999999988887 7899999999999987 579999999999999964

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=4.1e-40  Score=241.31  Aligned_cols=209  Identities=17%  Similarity=0.279  Sum_probs=176.1

Q ss_pred             eeEEEeecCcceEEEEEeCCC-CEEEEecCCCeEEEEEcccceE--EeeeccceeeeccceeeEEeCCCCCeEEEEecCC
Q 040370           11 RAFRVIQDTHNVRSVSFHPSG-DFLLAGTDHPIAHLYDVNTFQC--YLSANVPEISVNGAINQVRYSSTGGMYVTASKDG   87 (228)
Q Consensus        11 ~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~vw~~~~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg   87 (228)
                      ...++.+|.++|++++|+|++ ++|++|+.|++|++|++.....  ........+| ...|.+++|+|++++|++|+.|+
T Consensus         9 l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h-~~~v~~~~~s~dg~~l~s~s~D~   87 (319)
T 3frx_A            9 LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGH-SHIVQDCTLTADGAYALSASWDK   87 (319)
T ss_dssp             EEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECC-SSCEEEEEECTTSSEEEEEETTS
T ss_pred             EEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCC-cccEEEEEECCCCCEEEEEeCCC
Confidence            344566899999999999954 8999999999999999875321  1112222333 88999999999999999999999


Q ss_pred             eEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCc-
Q 040370           88 AIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEE-  166 (228)
Q Consensus        88 ~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  166 (228)
                      +|++||+++++....+..|  ...|.+++|+|++.++++|+.|++|++||++. +.+..+.+  |...+..+.+.|... 
T Consensus        88 ~v~~wd~~~~~~~~~~~~h--~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~-~~~~~~~~--h~~~v~~~~~~~~~~~  162 (319)
T 3frx_A           88 TLRLWDVATGETYQRFVGH--KSDVMSVDIDKKASMIISGSRDKTIKVWTIKG-QCLATLLG--HNDWVSQVRVVPNEKA  162 (319)
T ss_dssp             EEEEEETTTTEEEEEEECC--SSCEEEEEECTTSCEEEEEETTSCEEEEETTS-CEEEEECC--CSSCEEEEEECCC---
T ss_pred             EEEEEECCCCCeeEEEccC--CCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC-CeEEEEec--cCCcEEEEEEccCCCC
Confidence            9999999999999888876  77899999999999999999999999999974 56666655  667788888988543 


Q ss_pred             -----EEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370          167 -----FVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEI  227 (228)
Q Consensus       167 -----~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~  227 (228)
                           .+++ ++.|+.|++||+++.+....+ .+|...|.+++|+|++++|++++.||.|++||+.
T Consensus       163 ~~~~~~l~s-~~~d~~i~~wd~~~~~~~~~~-~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~  226 (319)
T 3frx_A          163 DDDSVTIIS-AGNDKMVKAWNLNQFQIEADF-IGHNSNINTLTASPDGTLIASAGKDGEIMLWNLA  226 (319)
T ss_dssp             ---CCEEEE-EETTSCEEEEETTTTEEEEEE-CCCCSCEEEEEECTTSSEEEEEETTCEEEEEETT
T ss_pred             CCCccEEEE-EeCCCEEEEEECCcchhheee-cCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC
Confidence                 4555 555899999999998888777 7899999999999999999999999999999974

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=1.3e-39  Score=241.75  Aligned_cols=208  Identities=16%  Similarity=0.234  Sum_probs=180.0

Q ss_pred             ceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeE
Q 040370           10 KRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAI   89 (228)
Q Consensus        10 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v   89 (228)
                      +....+.+|...|++++|+|++++|++|+.|++|++||..+++.......+    ...|.+++|+|+++.+++|+.|+.+
T Consensus        55 ~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~----~~~v~~~~~sp~g~~lasg~~d~~i  130 (354)
T 2pbi_B           55 KTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMP----CTWVMACAYAPSGCAIACGGLDNKC  130 (354)
T ss_dssp             CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECS----SSCCCEEEECTTSSEEEEESTTSEE
T ss_pred             EEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecC----CCCEEEEEECCCCCEEEEeeCCCCE
Confidence            345567799999999999999999999999999999999888766555432    6789999999999999999999999


Q ss_pred             EEEeCCCC------ceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECC
Q 040370           90 RLWDGVSA------NCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFND  163 (228)
Q Consensus        90 ~iwd~~~~------~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (228)
                      ++|++...      .....+..|  ...|.++.|+|++..|++++.|++|++||+++++.+..+.+  |...+.++.++|
T Consensus       131 ~v~~~~~~~~~~~~~~~~~~~~h--~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~--h~~~v~~~~~~~  206 (354)
T 2pbi_B          131 SVYPLTFDKNENMAAKKKSVAMH--TNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHG--HGADVLCLDLAP  206 (354)
T ss_dssp             EEEECCCCTTCCSGGGCEEEEEC--SSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEEC--CSSCEEEEEECC
T ss_pred             EEEEEeccccccccccceeeecc--CCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcC--CCCCeEEEEEEe
Confidence            99998643      234445544  77899999999999999999999999999999999988877  566677777877


Q ss_pred             C--CcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370          164 T--EEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEI  227 (228)
Q Consensus       164 ~--~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~  227 (228)
                      +  +.++++++. |+.|++||+++++.+..+ .+|...|.+++|+|++.+|++++.|+.|++||+.
T Consensus       207 ~~~g~~l~sgs~-Dg~v~~wd~~~~~~~~~~-~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~  270 (354)
T 2pbi_B          207 SETGNTFVSGGC-DKKAMVWDMRSGQCVQAF-ETHESDVNSVRYYPSGDAFASGSDDATCRLYDLR  270 (354)
T ss_dssp             CSSCCEEEEEET-TSCEEEEETTTCCEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred             CCCCCEEEEEeC-CCeEEEEECCCCcEEEEe-cCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECC
Confidence            4  566666554 899999999999988887 7899999999999999999999999999999974

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=3.7e-40  Score=244.00  Aligned_cols=222  Identities=17%  Similarity=0.318  Sum_probs=177.4

Q ss_pred             CCcCCccccceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeE
Q 040370            1 FFDFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMY   80 (228)
Q Consensus         1 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l   80 (228)
                      |||...........+.+|..+|.+++|+|++++|++|+.|+.|++||+..+...........| ...|.+++|+|++++|
T Consensus        87 iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h-~~~v~~~~~~p~~~~l  165 (345)
T 3fm0_A           87 IWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSH-TQDVKHVVWHPSQELL  165 (345)
T ss_dssp             EEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCC-CSCEEEEEECSSSSCE
T ss_pred             EEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCc-CCCeEEEEECCCCCEE
Confidence            477665555556677789999999999999999999999999999999876533323232333 7889999999999999


Q ss_pred             EEEecCCeEEEEeCCCCcee--eEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCC---------------ee
Q 040370           81 VTASKDGAIRLWDGVSANCV--RSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSG---------------RL  143 (228)
Q Consensus        81 ~~~~~dg~v~iwd~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~---------------~~  143 (228)
                      ++|+.|+.|++||.++++..  ..+..|  ...|.+++|+|++++|++++.|++|++||....               +.
T Consensus       166 ~s~s~d~~i~~w~~~~~~~~~~~~~~~h--~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~  243 (345)
T 3fm0_A          166 ASASYDDTVKLYREEEDDWVCCATLEGH--ESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKC  243 (345)
T ss_dssp             EEEETTSCEEEEEEETTEEEEEEEECCC--SSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEE
T ss_pred             EEEeCCCcEEEEEecCCCEEEEEEecCC--CCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccce
Confidence            99999999999999887643  445544  779999999999999999999999999997432               12


Q ss_pred             EEEEecceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcce--------eEEeecCCCCCcEEEEeCCCC-cEEEE
Q 040370          144 VKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEK--------VAKWSSNHIGAPRWIEHSPAE-AAFIT  214 (228)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~--------~~~~~~~~~~~v~~~~~~~~~-~~l~s  214 (228)
                      +..+.+ .|...+..+.|+|++..+++++. |+.|++|+......        ......+|...|++++|+|++ .+|++
T Consensus       244 ~~~~~~-~h~~~v~~v~~~~~~~~l~s~~~-d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS  321 (345)
T 3fm0_A          244 ICTLSG-FHSRTIYDIAWCQLTGALATACG-DDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLAS  321 (345)
T ss_dssp             EEEECS-SCSSCEEEEEECTTTCCEEEEET-TSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEE
T ss_pred             eEEecC-CCCCcEEEEEEecCCCEEEEEeC-CCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEE
Confidence            222222 25667889999999999888776 79999999875431        122235899999999999987 59999


Q ss_pred             ecCCCCEEEeeec
Q 040370          215 CGTDRSVRFWKEI  227 (228)
Q Consensus       215 ~~~dg~i~vwd~~  227 (228)
                      |+.||.|++|++.
T Consensus       322 ~s~Dg~v~~W~~~  334 (345)
T 3fm0_A          322 CSDDGEVAFWKYQ  334 (345)
T ss_dssp             EETTSCEEEEEEC
T ss_pred             cCCCCcEEEEEec
Confidence            9999999999974

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=1.9e-39  Score=237.80  Aligned_cols=217  Identities=16%  Similarity=0.309  Sum_probs=180.4

Q ss_pred             CCcCCcccc---ceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCC
Q 040370            1 FFDFSKATA---KRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTG   77 (228)
Q Consensus         1 iwd~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~   77 (228)
                      +||+.....   .+...+.+|...|.+++|+|++++|++|+.|++|++||+.+++....+..   | ...|.+++|+|++
T Consensus        44 ~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~---h-~~~v~~~~~~~~~  119 (319)
T 3frx_A           44 SWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVG---H-KSDVMSVDIDKKA  119 (319)
T ss_dssp             EEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEEC---C-SSCEEEEEECTTS
T ss_pred             EecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEcc---C-CCcEEEEEEcCCC
Confidence            466653322   23456678999999999999999999999999999999999987665542   3 8899999999999


Q ss_pred             CeEEEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCC------CCEEEEeeCCCeEEEEEccCCeeEEEEecce
Q 040370           78 GMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKD------QRFVLSCGKDSTVKLWEVSSGRLVKQYLGAT  151 (228)
Q Consensus        78 ~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~------~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~  151 (228)
                      +++++|+.|+.|++||++ ++.+..+..|  ...+.++.|.|.      +..+++++.|+.|++||+++.+....+.+  
T Consensus       120 ~~l~s~s~D~~i~vwd~~-~~~~~~~~~h--~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~--  194 (319)
T 3frx_A          120 SMIISGSRDKTIKVWTIK-GQCLATLLGH--NDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIG--  194 (319)
T ss_dssp             CEEEEEETTSCEEEEETT-SCEEEEECCC--SSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECC--
T ss_pred             CEEEEEeCCCeEEEEECC-CCeEEEEecc--CCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecC--
Confidence            999999999999999986 4556666665  678999999985      44899999999999999999988888776  


Q ss_pred             eeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEee--------------------------------------
Q 040370          152 HTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWS--------------------------------------  193 (228)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~--------------------------------------  193 (228)
                      |...+.++.|+|++.++++++. |+.|++||+++++.+..+.                                      
T Consensus       195 h~~~v~~~~~sp~g~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~~~i~v~~~~~~~~~~~  273 (319)
T 3frx_A          195 HNSNINTLTASPDGTLIASAGK-DGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDD  273 (319)
T ss_dssp             CCSCEEEEEECTTSSEEEEEET-TCEEEEEETTTTEEEEEEECCSCEEEEEECSSSSEEEEEETTEEEEEEETTEEEEEE
T ss_pred             CCCcEEEEEEcCCCCEEEEEeC-CCeEEEEECCCCcEEEEecCCCcEEEEEEcCCCCEEEEEcCCCcEEEEeCcCeeeec
Confidence            6778999999999999988766 8999999998776543321                                      


Q ss_pred             ---------cCCCCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370          194 ---------SNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEI  227 (228)
Q Consensus       194 ---------~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~  227 (228)
                               ..|...+.+++|+|+|++|++|+.||.|++||+.
T Consensus       274 ~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~  316 (319)
T 3frx_A          274 LRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVM  316 (319)
T ss_dssp             ECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEE
T ss_pred             cCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEe
Confidence                     0134467889999999999999999999999974

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=1e-39  Score=237.01  Aligned_cols=220  Identities=19%  Similarity=0.246  Sum_probs=174.4

Q ss_pred             CCcCCccccceeEEEeecCcceEEEEEeC--CCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCC--
Q 040370            1 FFDFSKATAKRAFRVIQDTHNVRSVSFHP--SGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSST--   76 (228)
Q Consensus         1 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--   76 (228)
                      |||+.....+....+.+|..+|.+++|+|  ++++|++|+.|++|++||+++++..... .... |...|.+++|+|+  
T Consensus        35 iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~-~~~~-h~~~v~~v~~~p~~~  112 (297)
T 2pm7_B           35 IFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIA-VHAV-HSASVNSVQWAPHEY  112 (297)
T ss_dssp             EEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCE-EECC-CSSCEEEEEECCGGG
T ss_pred             EEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEE-Eeec-CCCceeEEEeCcCCC
Confidence            57776554455667779999999999986  4899999999999999999876421111 1112 3788999999997  


Q ss_pred             CCeEEEEecCCeEEEEeCCCCce--eeEEecccccceeEEEEECCC-------------CCEEEEeeCCCeEEEEEccCC
Q 040370           77 GGMYVTASKDGAIRLWDGVSANC--VRSIVGAHGTAEATSANFTKD-------------QRFVLSCGKDSTVKLWEVSSG  141 (228)
Q Consensus        77 ~~~l~~~~~dg~v~iwd~~~~~~--~~~~~~~~~~~~i~~~~~~~~-------------~~~l~~~~~d~~i~~wd~~~~  141 (228)
                      +++|++++.|+.|++||++++..  ...+..|  ...|.+++|+|+             +++|++|+.|+.|++||++++
T Consensus       113 g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h--~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~  190 (297)
T 2pm7_B          113 GPMLLVASSDGKVSVVEFKENGTTSPIIIDAH--AIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSD  190 (297)
T ss_dssp             CSEEEEEETTSEEEEEEBCSSSCBCCEEEECC--SSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETT
T ss_pred             CcEEEEEECCCcEEEEEecCCCceeeeeeecc--cCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCC
Confidence            88999999999999999987642  3344444  778999999996             579999999999999999876


Q ss_pred             e----eEEEEecceeeeeeeEEEECCCC---cEEEEeeCCCCeEEEEEcCCcce--eEEee--cCCCCCcEEEEeCCCCc
Q 040370          142 R----LVKQYLGATHTQLRFQAVFNDTE---EFVLSIDEPSNEIVIWDALTAEK--VAKWS--SNHIGAPRWIEHSPAEA  210 (228)
Q Consensus       142 ~----~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~d~~i~i~d~~~~~~--~~~~~--~~~~~~v~~~~~~~~~~  210 (228)
                      +    ....+.+  |...+.++.|+|++   .++++ ++.|+.|++||+++...  .....  ..|...|.+++|+|+++
T Consensus       191 ~~~~~~~~~l~~--H~~~V~~v~~sp~~~~~~~las-~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~  267 (297)
T 2pm7_B          191 AQTYVLESTLEG--HSDWVRDVAWSPTVLLRSYMAS-VSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGN  267 (297)
T ss_dssp             TTEEEEEEEECC--CSSCEEEEEECCCCSSSEEEEE-EETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSC
T ss_pred             CceEEEEEEecC--CCCceEEEEECCCCCCceEEEE-EECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCC
Confidence            5    4445554  77889999999985   55555 55589999999987531  22222  46788999999999999


Q ss_pred             EEEEecCCCCEEEeeec
Q 040370          211 AFITCGTDRSVRFWKEI  227 (228)
Q Consensus       211 ~l~s~~~dg~i~vwd~~  227 (228)
                      +|++++.||.|++|+..
T Consensus       268 ~las~~~D~~v~lw~~~  284 (297)
T 2pm7_B          268 VLALSGGDNKVTLWKEN  284 (297)
T ss_dssp             CEEEEETTSCEEEEEEC
T ss_pred             EEEEEcCCCcEEEEEEC
Confidence            99999999999999974

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=1.3e-39  Score=240.84  Aligned_cols=210  Identities=17%  Similarity=0.277  Sum_probs=172.7

Q ss_pred             eeEEEeecCcceEEEEE-----eC-CCCEEEEecCCCeEEEEEcccceE----EeeeccceeeeccceeeEEeCCCCCeE
Q 040370           11 RAFRVIQDTHNVRSVSF-----HP-SGDFLLAGTDHPIAHLYDVNTFQC----YLSANVPEISVNGAINQVRYSSTGGMY   80 (228)
Q Consensus        11 ~~~~~~~~~~~v~~~~~-----~~-~~~~l~~~~~d~~i~vw~~~~~~~----~~~~~~~~~~~~~~i~~~~~~~~~~~l   80 (228)
                      ....+.+|...|++++|     ++ ++++|++|+.|++|++||+...+.    ........+| ...|.+++|+|++.++
T Consensus        13 ~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h-~~~V~~~~~~~~~~~l   91 (343)
T 2xzm_R           13 KRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGH-NHFVSDLALSQENCFA   91 (343)
T ss_dssp             EEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCC-SSCEEEEEECSSTTEE
T ss_pred             eeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccC-CCceEEEEECCCCCEE
Confidence            34456689999999999     77 899999999999999999975431    1111122233 8899999999999999


Q ss_pred             EEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEE
Q 040370           81 VTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAV  160 (228)
Q Consensus        81 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~  160 (228)
                      ++|+.|++|++||+++++....+..|  ...|.+++|+|++++|++++.|+.|++||+.............+...+.++.
T Consensus        92 ~s~s~D~~v~lwd~~~~~~~~~~~~h--~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~  169 (343)
T 2xzm_R           92 ISSSWDKTLRLWDLRTGTTYKRFVGH--QSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVR  169 (343)
T ss_dssp             EEEETTSEEEEEETTSSCEEEEEECC--CSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEEEEE
T ss_pred             EEEcCCCcEEEEECCCCcEEEEEcCC--CCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCceeeeecccCCCceeeeee
Confidence            99999999999999999998888876  7799999999999999999999999999998543332222224677788999


Q ss_pred             ECCCC----------cEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeee
Q 040370          161 FNDTE----------EFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKE  226 (228)
Q Consensus       161 ~~~~~----------~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~  226 (228)
                      |+|++          .++++++ .|+.|++||. +.+....+ .+|...|.+++|+|++++|++|+.||.|++||+
T Consensus       170 ~~~~~~~~~~~~~~~~~l~s~~-~d~~i~iwd~-~~~~~~~~-~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~  242 (343)
T 2xzm_R          170 YSPIMKSANKVQPFAPYFASVG-WDGRLKVWNT-NFQIRYTF-KAHESNVNHLSISPNGKYIATGGKDKKLLIWDI  242 (343)
T ss_dssp             ECCCCCSCSCCCSSCCEEEEEE-TTSEEEEEET-TTEEEEEE-ECCSSCEEEEEECTTSSEEEEEETTCEEEEEES
T ss_pred             eccccccccccCCCCCEEEEEc-CCCEEEEEcC-CCceeEEE-cCccccceEEEECCCCCEEEEEcCCCeEEEEEC
Confidence            99987          5666655 4899999994 45555555 689999999999999999999999999999997

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=3e-39  Score=243.07  Aligned_cols=216  Identities=23%  Similarity=0.423  Sum_probs=180.5

Q ss_pred             CCcCCccccceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCC-CCCe
Q 040370            1 FFDFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSS-TGGM   79 (228)
Q Consensus         1 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~   79 (228)
                      |||+...  +....+.+|...|.+++|+|++++|++|+.|+.|++||+.+++.......     ...+.+++|+| ++++
T Consensus       149 iwd~~~~--~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~-----~~~v~~~~~~~~~~~~  221 (393)
T 1erj_A          149 IWDIENR--KIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSI-----EDGVTTVAVSPGDGKY  221 (393)
T ss_dssp             EEETTTT--EEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEEC-----SSCEEEEEECSTTCCE
T ss_pred             EEECCCC--cEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEEc-----CCCcEEEEEECCCCCE
Confidence            4777643  34455668999999999999999999999999999999999887655432     56799999999 8999


Q ss_pred             EEEEecCCeEEEEeCCCCceeeEEec-----ccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCe------------
Q 040370           80 YVTASKDGAIRLWDGVSANCVRSIVG-----AHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGR------------  142 (228)
Q Consensus        80 l~~~~~dg~v~iwd~~~~~~~~~~~~-----~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~------------  142 (228)
                      +++|+.||.|++||+++++.+..+..     ..+...|.+++|+|++++|++|+.|+.|++||+++..            
T Consensus       222 l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~  301 (393)
T 1erj_A          222 IAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGT  301 (393)
T ss_dssp             EEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------C
T ss_pred             EEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCc
Confidence            99999999999999999887776631     1236789999999999999999999999999997643            


Q ss_pred             eEEEEecceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCC------CCcEEEEec
Q 040370          143 LVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSP------AEAAFITCG  216 (228)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~------~~~~l~s~~  216 (228)
                      ....+.+  |...+.+++++|++.++++++. |+.|++||.++++.+..+ .+|...|.+++|++      ++++|++|+
T Consensus       302 ~~~~~~~--h~~~v~~~~~~~~~~~l~sgs~-D~~v~iwd~~~~~~~~~l-~~h~~~v~~v~~~~~~~~~p~~~~l~sgs  377 (393)
T 1erj_A          302 CEVTYIG--HKDFVLSVATTQNDEYILSGSK-DRGVLFWDKKSGNPLLML-QGHRNSVISVAVANGSSLGPEYNVFATGS  377 (393)
T ss_dssp             EEEEEEC--CSSCEEEEEECGGGCEEEEEET-TSEEEEEETTTCCEEEEE-ECCSSCEEEEEECSSCTTCTTCEEEEEEE
T ss_pred             ceEEEec--ccCcEEEEEECCCCCEEEEEeC-CCeEEEEECCCCeEEEEE-CCCCCCEEEEEecCCcCcCCCCCEEEEEC
Confidence            2333444  5677889999999999888665 899999999999988877 78999999999876      688999999


Q ss_pred             CCCCEEEeeec
Q 040370          217 TDRSVRFWKEI  227 (228)
Q Consensus       217 ~dg~i~vwd~~  227 (228)
                      .||.|++|++.
T Consensus       378 ~Dg~i~iW~~~  388 (393)
T 1erj_A          378 GDCKARIWKYK  388 (393)
T ss_dssp             TTSEEEEEEEE
T ss_pred             CCCcEEECccc
Confidence            99999999974

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.1e-39  Score=237.72  Aligned_cols=208  Identities=18%  Similarity=0.306  Sum_probs=167.8

Q ss_pred             ceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccce--EEeeeccceeeeccceeeEEeCCCCCeEEEEecCC
Q 040370           10 KRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQ--CYLSANVPEISVNGAINQVRYSSTGGMYVTASKDG   87 (228)
Q Consensus        10 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~--~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg   87 (228)
                      +....+.+|..+|.+++|+|+  +|++|+.|+.|++||+..+.  ....+.  ...|...|.+++|+|++++|++|+.|+
T Consensus         5 ~~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~--~~~h~~~v~~v~~sp~~~~las~s~D~   80 (330)
T 2hes_X            5 NLIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLD--ETAHKKAIRSVAWRPHTSLLAAGSFDS   80 (330)
T ss_dssp             EEEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEEC--TTCCCSCEEEEEECTTSSEEEEEETTS
T ss_pred             ccceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEe--cCCccCCEEEEEECCCCCEEEEEeCCC
Confidence            345566789999999999987  99999999999999998753  222221  122388999999999999999999999


Q ss_pred             eEEEEeCCC-------CceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCC----eeEEEEecceeeeee
Q 040370           88 AIRLWDGVS-------ANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSG----RLVKQYLGATHTQLR  156 (228)
Q Consensus        88 ~v~iwd~~~-------~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~----~~~~~~~~~~~~~~~  156 (228)
                      .|++||++.       .+....+..|  ...|.+++|+|++++|++|+.|++|++||++..    +.+..+..  |...+
T Consensus        81 ~v~iw~~~~~~~~~~~~~~~~~~~~h--~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~--h~~~v  156 (330)
T 2hes_X           81 TVSIWAKEESADRTFEMDLLAIIEGH--ENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQE--HSQDV  156 (330)
T ss_dssp             CEEEEEC-------CCCEEEEEEC------CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECC--CSSCE
T ss_pred             cEEEEEcccCcCccccceeEEEEcCC--CCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEecc--CCCce
Confidence            999999853       2344555554  778999999999999999999999999999532    34555555  67789


Q ss_pred             eEEEECCCCcEEEEeeCCCCeEEEEEcCCc--ceeEEeecCCCCCcEEEEeCCC--CcEEEEecCCCCEEEeeec
Q 040370          157 FQAVFNDTEEFVLSIDEPSNEIVIWDALTA--EKVAKWSSNHIGAPRWIEHSPA--EAAFITCGTDRSVRFWKEI  227 (228)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~--~~~~~~~~~~~~~v~~~~~~~~--~~~l~s~~~dg~i~vwd~~  227 (228)
                      .++.|+|++.++++++. |+.|++||.+++  +.+..+ .+|.+.|.+++|+|+  +.+|++++.|++|++||+.
T Consensus       157 ~~v~~~p~~~~l~s~s~-D~~i~iW~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~  229 (330)
T 2hes_X          157 KHVIWHPSEALLASSSY-DDTVRIWKDYDDDWECVAVL-NGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYM  229 (330)
T ss_dssp             EEEEECSSSSEEEEEET-TSCEEEEEEETTEEEEEEEE-CCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEE
T ss_pred             EEEEECCCCCEEEEEcC-CCeEEEEECCCCCeeEEEEc-cCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEec
Confidence            99999999998888665 899999998776  455555 789999999999998  6789999999999999963

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=5.5e-39  Score=234.62  Aligned_cols=217  Identities=23%  Similarity=0.505  Sum_probs=183.2

Q ss_pred             CCcCCccccceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeE
Q 040370            1 FFDFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMY   80 (228)
Q Consensus         1 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l   80 (228)
                      |||+...  +....+.+|...|.+++|+|++++|++|+.|+.|++||+++++....+..   | ..+|.+++|+|+++++
T Consensus        91 vwd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~---~-~~~v~~~~~~~~~~~l  164 (312)
T 4ery_A           91 IWDVSSG--KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPA---H-SDPVSAVHFNRDGSLI  164 (312)
T ss_dssp             EEETTTC--CEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECC---C-SSCEEEEEECTTSSEE
T ss_pred             EEECCCC--cEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecC---C-CCcEEEEEEcCCCCEE
Confidence            4777644  34455668999999999999999999999999999999999887665543   2 7789999999999999


Q ss_pred             EEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEE
Q 040370           81 VTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAV  160 (228)
Q Consensus        81 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~  160 (228)
                      ++++.||.|++||+++++.+..+...+ ...+..++|+|++++|++++.|+.|++||+++++.+..+..+..........
T Consensus       165 ~~~~~d~~i~~wd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  243 (312)
T 4ery_A          165 VSSSYDGLCRIWDTASGQCLKTLIDDD-NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFAN  243 (312)
T ss_dssp             EEEETTSCEEEEETTTCCEEEEECCSS-CCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEE
T ss_pred             EEEeCCCcEEEEECCCCceeeEEeccC-CCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEE
Confidence            999999999999999998887775543 6689999999999999999999999999999999988887754443333444


Q ss_pred             EC-CCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEec--CCCCEEEeee
Q 040370          161 FN-DTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCG--TDRSVRFWKE  226 (228)
Q Consensus       161 ~~-~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~--~dg~i~vwd~  226 (228)
                      +. +++.++++ ++.|+.|++||+++++.+..+ .+|...|.+++|+|++++|++++  .|+.|++|+.
T Consensus       244 ~~~~~~~~l~s-g~~dg~i~vwd~~~~~~~~~~-~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~  310 (312)
T 4ery_A          244 FSVTGGKWIVS-GSEDNLVYIWNLQTKEIVQKL-QGHTDVVISTACHPTENIIASAALENDKTIKLWKS  310 (312)
T ss_dssp             EECSSSCEEEE-CCTTSCEEEEETTTCCEEEEE-CCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEEC
T ss_pred             EEeCCCcEEEE-ECCCCEEEEEECCCchhhhhh-hccCCcEEEEeecCcCCceEEEEccCCccEEEecC
Confidence            44 45555555 555899999999999988887 78999999999999999999987  6999999986

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.6e-39  Score=237.34  Aligned_cols=219  Identities=15%  Similarity=0.234  Sum_probs=166.1

Q ss_pred             CCcCCccccceeEEE-ee-cCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceE----EeeeccceeeeccceeeEEeC
Q 040370            1 FFDFSKATAKRAFRV-IQ-DTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQC----YLSANVPEISVNGAINQVRYS   74 (228)
Q Consensus         1 iwd~~~~~~~~~~~~-~~-~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~----~~~~~~~~~~~~~~i~~~~~~   74 (228)
                      |||+..........+ .+ |...|.+++|+|++++|++|+.|+.|++|+++....    ........+| ...|.+++|+
T Consensus        38 lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h-~~~V~~v~~s  116 (330)
T 2hes_X           38 LVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGH-ENEVKGVAWS  116 (330)
T ss_dssp             EEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC-----CEEEEEEC
T ss_pred             EEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCC-CCcEEEEEEC
Confidence            477765433333333 23 999999999999999999999999999999864321    0111122233 8899999999


Q ss_pred             CCCCeEEEEecCCeEEEEeCCCC----ceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCC--eeEEEEe
Q 040370           75 STGGMYVTASKDGAIRLWDGVSA----NCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSG--RLVKQYL  148 (228)
Q Consensus        75 ~~~~~l~~~~~dg~v~iwd~~~~----~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~--~~~~~~~  148 (228)
                      |++++|++|+.|+.|++||++..    +.+..+..|  ...|.+++|+|++++|++++.|++|++||++++  +.+..+.
T Consensus       117 p~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h--~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~  194 (330)
T 2hes_X          117 NDGYYLATCSRDKSVWIWETDESGEEYECISVLQEH--SQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLN  194 (330)
T ss_dssp             TTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCC--SSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEEC
T ss_pred             CCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccC--CCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEcc
Confidence            99999999999999999999532    344555554  778999999999999999999999999999876  4566665


Q ss_pred             cceeeeeeeEEEECCC--CcEEEEeeCCCCeEEEEEcCCc--------ceeEEeecCCCCCcEEEEeCCCCcEEEEecCC
Q 040370          149 GATHTQLRFQAVFNDT--EEFVLSIDEPSNEIVIWDALTA--------EKVAKWSSNHIGAPRWIEHSPAEAAFITCGTD  218 (228)
Q Consensus       149 ~~~~~~~~~~~~~~~~--~~~~~~~~~~d~~i~i~d~~~~--------~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d  218 (228)
                      +  |...+.++.|+|+  +..+++ ++.|+.|++||++.+        .....+...|...|.+++|++++ +|++++.|
T Consensus       195 ~--h~~~v~~~~~~~~~~~~~l~s-~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~d  270 (330)
T 2hes_X          195 G--HEGTVWSSDFDKTEGVFRLCS-GSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGAD  270 (330)
T ss_dssp             C--CSSCEEEEEECCSSSSCEEEE-EETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETT
T ss_pred             C--CCCcEEEEEecCCCCeeEEEE-EeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCC
Confidence            5  6778899999998  445555 455899999998765        23333423489999999999765 89999999


Q ss_pred             CCEEEeee
Q 040370          219 RSVRFWKE  226 (228)
Q Consensus       219 g~i~vwd~  226 (228)
                      |.|++||.
T Consensus       271 g~v~iw~~  278 (330)
T 2hes_X          271 GVLAVYEE  278 (330)
T ss_dssp             SCEEEEEE
T ss_pred             CEEEEEEc
Confidence            99999996

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=2.3e-39  Score=235.12  Aligned_cols=204  Identities=13%  Similarity=0.183  Sum_probs=166.0

Q ss_pred             EEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccc--eEEeeeccceeeeccceeeEEeCC--CCCeEEEEecCCeE
Q 040370           14 RVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTF--QCYLSANVPEISVNGAINQVRYSS--TGGMYVTASKDGAI   89 (228)
Q Consensus        14 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~--~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~~dg~v   89 (228)
                      .+.+|...|++++|+|++++||+|+.|++|+|||+...  +....+   .+| .++|.+++|+|  ++++|++|+.|++|
T Consensus         4 ~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l---~gH-~~~V~~v~~s~~~~g~~l~s~s~D~~v   79 (297)
T 2pm7_B            4 IANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTL---TGH-EGPVWRVDWAHPKFGTILASCSYDGKV   79 (297)
T ss_dssp             ECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEE---CCC-SSCEEEEEECCGGGCSEEEEEETTTEE
T ss_pred             eccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEE---ccc-cCCeEEEEecCCCcCCEEEEEcCCCEE
Confidence            34579999999999999999999999999999999753  222222   233 88999999986  38899999999999


Q ss_pred             EEEeCCCCc--eeeEEecccccceeEEEEECCC--CCEEEEeeCCCeEEEEEccCCee--EEEEecceeeeeeeEEEECC
Q 040370           90 RLWDGVSAN--CVRSIVGAHGTAEATSANFTKD--QRFVLSCGKDSTVKLWEVSSGRL--VKQYLGATHTQLRFQAVFND  163 (228)
Q Consensus        90 ~iwd~~~~~--~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~--~~~~~~~~~~~~~~~~~~~~  163 (228)
                      ++||+++++  .+..+..|  ...|.+++|+|+  +.+|++++.|+.|++||++++..  ...+..  |...+..+.|+|
T Consensus        80 ~iWd~~~~~~~~~~~~~~h--~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~--h~~~v~~~~~~p  155 (297)
T 2pm7_B           80 MIWKEENGRWSQIAVHAVH--SASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDA--HAIGVNSASWAP  155 (297)
T ss_dssp             EEEEBSSSCBCCCEEECCC--SSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEEC--CSSCEEEEEECC
T ss_pred             EEEEcCCCceEEEEEeecC--CCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeec--ccCccceEeecC
Confidence            999998874  34445444  778999999997  88999999999999999987632  233433  667788999998


Q ss_pred             CC-------------cEEEEeeCCCCeEEEEEcCCcc----eeEEeecCCCCCcEEEEeCCCC---cEEEEecCCCCEEE
Q 040370          164 TE-------------EFVLSIDEPSNEIVIWDALTAE----KVAKWSSNHIGAPRWIEHSPAE---AAFITCGTDRSVRF  223 (228)
Q Consensus       164 ~~-------------~~~~~~~~~d~~i~i~d~~~~~----~~~~~~~~~~~~v~~~~~~~~~---~~l~s~~~dg~i~v  223 (228)
                      +.             .++++ ++.|+.|++||+++++    ....+ .+|...|.+++|+|++   .+|++++.|++|++
T Consensus       156 ~~~~~~~~~~~~~~~~~l~s-gs~D~~v~lwd~~~~~~~~~~~~~l-~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~i  233 (297)
T 2pm7_B          156 ATIEEDGEHNGTKESRKFVT-GGADNLVKIWKYNSDAQTYVLESTL-EGHSDWVRDVAWSPTVLLRSYMASVSQDRTCII  233 (297)
T ss_dssp             CC------------CCEEEE-EETTSCEEEEEEETTTTEEEEEEEE-CCCSSCEEEEEECCCCSSSEEEEEEETTSCEEE
T ss_pred             CcccccccCCCCCCcceEEE-EcCCCcEEEEEEcCCCceEEEEEEe-cCCCCceEEEEECCCCCCceEEEEEECCCcEEE
Confidence            73             45555 4558999999998766    33444 6899999999999984   89999999999999


Q ss_pred             eeec
Q 040370          224 WKEI  227 (228)
Q Consensus       224 wd~~  227 (228)
                      ||+.
T Consensus       234 Wd~~  237 (297)
T 2pm7_B          234 WTQD  237 (297)
T ss_dssp             EEES
T ss_pred             EEeC
Confidence            9973

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=1.2e-38  Score=239.80  Aligned_cols=208  Identities=18%  Similarity=0.306  Sum_probs=175.6

Q ss_pred             EEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceee--------------eccceeeEEeCCCCC
Q 040370           13 FRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEIS--------------VNGAINQVRYSSTGG   78 (228)
Q Consensus        13 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~--------------~~~~i~~~~~~~~~~   78 (228)
                      .+..+|...|.+++|+|+|++||+|+ ++.+++|++.+++....+......              +...|.+++|+|+++
T Consensus        58 ~~~~~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~  136 (393)
T 1erj_A           58 HKSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGK  136 (393)
T ss_dssp             EEEEECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSS
T ss_pred             EEecCCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCC
Confidence            34457999999999999999999987 678999999998876554332110              122489999999999


Q ss_pred             eEEEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeE
Q 040370           79 MYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQ  158 (228)
Q Consensus        79 ~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~  158 (228)
                      +|++|+.|+.|++||+++++....+..|  ...|.+++|+|++++|++++.|++|++||+++++....+.   +...+..
T Consensus       137 ~l~s~~~d~~i~iwd~~~~~~~~~~~~h--~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~---~~~~v~~  211 (393)
T 1erj_A          137 FLATGAEDRLIRIWDIENRKIVMILQGH--EQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS---IEDGVTT  211 (393)
T ss_dssp             EEEEEETTSCEEEEETTTTEEEEEECCC--SSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE---CSSCEEE
T ss_pred             EEEEEcCCCeEEEEECCCCcEEEEEccC--CCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEE---cCCCcEE
Confidence            9999999999999999999988888776  7789999999999999999999999999999998877765   3456788


Q ss_pred             EEECC-CCcEEEEeeCCCCeEEEEEcCCcceeEEee------cCCCCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370          159 AVFND-TEEFVLSIDEPSNEIVIWDALTAEKVAKWS------SNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEI  227 (228)
Q Consensus       159 ~~~~~-~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~------~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~  227 (228)
                      +.++| ++.++++++. |+.|++||+++++.+..+.      .+|...|.+++|+|++++|++++.||.|++||+.
T Consensus       212 ~~~~~~~~~~l~~~s~-d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~  286 (393)
T 1erj_A          212 VAVSPGDGKYIAAGSL-DRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQ  286 (393)
T ss_dssp             EEECSTTCCEEEEEET-TSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred             EEEECCCCCEEEEEcC-CCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECC
Confidence            89998 6677766554 8999999999988776652      4789999999999999999999999999999974

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=8.6e-39  Score=238.26  Aligned_cols=203  Identities=11%  Similarity=0.131  Sum_probs=167.6

Q ss_pred             cCcceEEEEEeCCCCEEEE--ecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCC
Q 040370           18 DTHNVRSVSFHPSGDFLLA--GTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGV   95 (228)
Q Consensus        18 ~~~~v~~~~~~~~~~~l~~--~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~   95 (228)
                      +...+++++|+|||+++++  ++.|++|+|||+++++.+..+.    + ...|.+++|+|+|+++++++.+ .+++|+..
T Consensus       132 ~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~----~-~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~  205 (365)
T 4h5i_A          132 ADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIE----T-RGEVKDLHFSTDGKVVAYITGS-SLEVISTV  205 (365)
T ss_dssp             TTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEE----C-SSCCCEEEECTTSSEEEEECSS-CEEEEETT
T ss_pred             cccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeC----C-CCceEEEEEccCCceEEeccce-eEEEEEec
Confidence            3456899999999999864  4578999999999998766543    2 6789999999999999999855 56667667


Q ss_pred             CCceeeEEecccccceeEEEEECCCCCEEEEeeCCC----eEEEEEccCCeeEE--EEecceeeeeeeEEEECCCCcEEE
Q 040370           96 SANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDS----TVKLWEVSSGRLVK--QYLGATHTQLRFQAVFNDTEEFVL  169 (228)
Q Consensus        96 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~----~i~~wd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~  169 (228)
                      +++.........+...+.+++|+|+++++++++.|+    .+++||+.......  ......+...+.+++|+|++++++
T Consensus       206 ~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~la  285 (365)
T 4h5i_A          206 TGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAV  285 (365)
T ss_dssp             TCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEE
T ss_pred             cCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceE
Confidence            777665544444478899999999999999999887    68899988765422  222223667789999999999988


Q ss_pred             EeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370          170 SIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEI  227 (228)
Q Consensus       170 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~  227 (228)
                      +++. |+.|+|||+++++++..+..+|..+|++++|+|++++|+|||.|++|+|||+.
T Consensus       286 sgs~-D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip  342 (365)
T 4h5i_A          286 LASN-DNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLP  342 (365)
T ss_dssp             EEET-TSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECC
T ss_pred             EEcC-CCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcC
Confidence            8666 89999999999999988768999999999999999999999999999999974

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=9.7e-39  Score=242.24  Aligned_cols=221  Identities=17%  Similarity=0.313  Sum_probs=183.2

Q ss_pred             CCcCCccccceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccce-------------------
Q 040370            1 FFDFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPE-------------------   61 (228)
Q Consensus         1 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~-------------------   61 (228)
                      |||..++...+.++..+|...|++++|+|+|++|++|+.||.|++||+++++.+.....+.                   
T Consensus       129 lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~~~~l~sgs~d  208 (420)
T 4gga_A          129 LWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRS  208 (420)
T ss_dssp             EEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETT
T ss_pred             EEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeCCCEEEEEeCC
Confidence            6888877777777777888999999999999999999999999999999887654432110                   


Q ss_pred             ------------------eeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCCCce----eeEEecccccceeEEEEECC
Q 040370           62 ------------------ISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANC----VRSIVGAHGTAEATSANFTK  119 (228)
Q Consensus        62 ------------------~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~----~~~~~~~~~~~~i~~~~~~~  119 (228)
                                        ..|...+..+.|+|+++++++++.|+.+++|+..+++.    +.....+  ...|.+++|+|
T Consensus       209 ~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~--~~~V~~~~~~p  286 (420)
T 4gga_A          209 GHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQH--QGAVKAVAWCP  286 (420)
T ss_dssp             SEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCC--SSCEEEEEECT
T ss_pred             CceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeeccc--CCceeeeeeCC
Confidence                              12366788899999999999999999999999987653    3333333  77899999999


Q ss_pred             CCC-EEEE--eeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEe-eCCCCeEEEEEcCCcceeEEeecC
Q 040370          120 DQR-FVLS--CGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSI-DEPSNEIVIWDALTAEKVAKWSSN  195 (228)
Q Consensus       120 ~~~-~l~~--~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~d~~i~i~d~~~~~~~~~~~~~  195 (228)
                      .+. .+++  |+.|+.|++||+++++....+..   ...+..+.|++++..++++ +..|+.|++||+++++++..+ .+
T Consensus       287 ~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~---~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l-~g  362 (420)
T 4gga_A          287 WQSNVLATGGGTSDRHIRIWNVCSGACLSAVDA---HSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAEL-KG  362 (420)
T ss_dssp             TCTTEEEEEECTTTCEEEEEETTTTEEEEEEEC---SSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEE-CC
T ss_pred             CcccEEEEEeecCCCEEEEEeCCccccceeecc---ccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEE-cC
Confidence            654 5554  45899999999999998888764   3456788899998888765 446899999999999999988 79


Q ss_pred             CCCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370          196 HIGAPRWIEHSPAEAAFITCGTDRSVRFWKEI  227 (228)
Q Consensus       196 ~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~  227 (228)
                      |.+.|++++|+|++++|+||+.|++|+|||+.
T Consensus       363 H~~~V~~l~~spdg~~l~S~s~D~tvriWdv~  394 (420)
T 4gga_A          363 HTSRVLSLTMSPDGATVASAAADETLRLWRCF  394 (420)
T ss_dssp             CSSCEEEEEECTTSSCEEEEETTTEEEEECCS
T ss_pred             CCCCEEEEEEcCCCCEEEEEecCCeEEEEECC
Confidence            99999999999999999999999999999974

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=1.3e-39  Score=244.07  Aligned_cols=211  Identities=20%  Similarity=0.318  Sum_probs=179.5

Q ss_pred             EEEeecCcceEEEEEeCC-CCEEEEecCCCeEEEEEcccceEEeeecc--ceeeeccceeeEEeCC-CCCeEEEEecCCe
Q 040370           13 FRVIQDTHNVRSVSFHPS-GDFLLAGTDHPIAHLYDVNTFQCYLSANV--PEISVNGAINQVRYSS-TGGMYVTASKDGA   88 (228)
Q Consensus        13 ~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~vw~~~~~~~~~~~~~--~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~   88 (228)
                      ..+.+|...|.++.|+|+ +..|++|+.|++|++||+.+++....+..  ...| ...|.++.|+| ++++|++|+.||.
T Consensus       151 ~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~~l~sgs~D~~  229 (380)
T 3iz6_a          151 RVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGH-TADVLSLSINSLNANMFISGSCDTT  229 (380)
T ss_dssp             CBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSC-CSCEEEEEECSSSCCEEEEEETTSC
T ss_pred             eeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCC-ccCeEEEEeecCCCCEEEEEECCCe
Confidence            345689999999999996 56799999999999999999887765532  2233 78899999987 7899999999999


Q ss_pred             EEEEeCCC-CceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEeccee-----eeeeeEEEEC
Q 040370           89 IRLWDGVS-ANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATH-----TQLRFQAVFN  162 (228)
Q Consensus        89 v~iwd~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~-----~~~~~~~~~~  162 (228)
                      |++||++. ++.+..+..|  ...|.+++|+|++++|++|+.|++|++||+++++.+..+..+..     ...+..++|+
T Consensus       230 v~~wd~~~~~~~~~~~~~h--~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  307 (380)
T 3iz6_a          230 VRLWDLRITSRAVRTYHGH--EGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFS  307 (380)
T ss_dssp             EEEEETTTTCCCCEEECCC--SSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEEC
T ss_pred             EEEEECCCCCcceEEECCc--CCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEEC
Confidence            99999984 4666777665  77899999999999999999999999999999998887754321     2247889999


Q ss_pred             CCCcEEEEeeCCCCeEEEEEcCCcceeEEee---cCCCCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370          163 DTEEFVLSIDEPSNEIVIWDALTAEKVAKWS---SNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEI  227 (228)
Q Consensus       163 ~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~  227 (228)
                      |++.++++++. ||.|++||..+++....+.   .+|.+.|.+++|+|++++|++|+.||.|++|++.
T Consensus       308 ~~g~~l~~g~~-dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~  374 (380)
T 3iz6_a          308 ISGRLLFAGYS-NGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFS  374 (380)
T ss_dssp             SSSSEEEEECT-TSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECC
T ss_pred             CCCCEEEEEEC-CCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecC
Confidence            99999998665 8999999999888776652   5799999999999999999999999999999963

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=1.2e-39  Score=244.23  Aligned_cols=210  Identities=16%  Similarity=0.269  Sum_probs=174.1

Q ss_pred             ceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeE
Q 040370           10 KRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAI   89 (228)
Q Consensus        10 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v   89 (228)
                      .....+.+|..+|++++|+|++++|++|+.|++|++||+.+++....+..   | ...|.+++|+|++++|++|+.|+.+
T Consensus        57 ~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~---h-~~~v~~~~~s~~g~~las~~~d~~v  132 (380)
T 3iz6_a           57 VCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKL---H-CPWVMECAFAPNGQSVACGGLDSAC  132 (380)
T ss_dssp             EEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEEC---C-CTTCCCCEECTTSSEEEECCSSSCC
T ss_pred             EEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEec---C-CCCEEEEEECCCCCEEEEeeCCCcE
Confidence            34456679999999999999999999999999999999999887665543   2 7789999999999999999999999


Q ss_pred             EEEeCCCCc-------eeeEEecccccceeEEEEECCC-CCEEEEeeCCCeEEEEEccCCeeEEEEec---ceeeeeeeE
Q 040370           90 RLWDGVSAN-------CVRSIVGAHGTAEATSANFTKD-QRFVLSCGKDSTVKLWEVSSGRLVKQYLG---ATHTQLRFQ  158 (228)
Q Consensus        90 ~iwd~~~~~-------~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~d~~i~~wd~~~~~~~~~~~~---~~~~~~~~~  158 (228)
                      ++||+.+..       ....+..|  ...+.++.|.|+ +..|++|+.|++|++||+++++.+..+..   ..|...+..
T Consensus       133 ~iw~~~~~~~~~~~~~~~~~~~gh--~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~  210 (380)
T 3iz6_a          133 SIFNLSSQADRDGNMPVSRVLTGH--KGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLS  210 (380)
T ss_dssp             EEEECCCCSSCCCSSTTCCBCCCC--SSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEE
T ss_pred             EEEECCCCccccCCccceeeccCC--CcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEE
Confidence            999987532       22334444  678899999996 45799999999999999999988877632   236677888


Q ss_pred             EEECCC-CcEEEEeeCCCCeEEEEEcCCc-ceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370          159 AVFNDT-EEFVLSIDEPSNEIVIWDALTA-EKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEI  227 (228)
Q Consensus       159 ~~~~~~-~~~~~~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~  227 (228)
                      +.+++. +.++++ ++.|+.|++||++.. +.+..+ .+|.+.|.+++|+|++++|++|+.||+|++||+.
T Consensus       211 ~~~~~~~~~~l~s-gs~D~~v~~wd~~~~~~~~~~~-~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~  279 (380)
T 3iz6_a          211 LSINSLNANMFIS-GSCDTTVRLWDLRITSRAVRTY-HGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMR  279 (380)
T ss_dssp             EEECSSSCCEEEE-EETTSCEEEEETTTTCCCCEEE-CCCSSCCCEEEECTTSSEEEEECSSSCEEEEETT
T ss_pred             EEeecCCCCEEEE-EECCCeEEEEECCCCCcceEEE-CCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECC
Confidence            899874 455555 555899999999854 555555 7899999999999999999999999999999974

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=1.2e-38  Score=252.05  Aligned_cols=216  Identities=16%  Similarity=0.308  Sum_probs=180.0

Q ss_pred             CCcCCccccceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeE
Q 040370            1 FFDFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMY   80 (228)
Q Consensus         1 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l   80 (228)
                      |||+..+  .....+.+|...|++++|+|+|++||+|+.|++|+|||+.+++..... .... |.+.|.+++|+|+++.|
T Consensus        43 l~~~~~~--~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~-~~~~-~~~~v~~v~fs~dg~~l  118 (611)
T 1nr0_A           43 TVPVGSL--TDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKT-TIPV-FSGPVKDISWDSESKRI  118 (611)
T ss_dssp             EEETTCS--SCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEE-EEEC-SSSCEEEEEECTTSCEE
T ss_pred             EecCCCc--ccCeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeE-eecc-cCCceEEEEECCCCCEE
Confidence            4666533  344556689999999999999999999999999999999765432111 1112 37899999999999999


Q ss_pred             EEEecC----CeEEEEeCCCCceeeEEecccccceeEEEEECCCCC-EEEEeeCCCeEEEEEccCCeeEEEEecceeeee
Q 040370           81 VTASKD----GAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQR-FVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQL  155 (228)
Q Consensus        81 ~~~~~d----g~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~  155 (228)
                      ++++.+    +.|++||.  ++....+..|  ...|.+++|+|++. .|++++.|++|++||.++++....+.+  |...
T Consensus       119 ~~~~~~~~~~~~v~~wd~--~~~~~~l~gh--~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~--H~~~  192 (611)
T 1nr0_A          119 AAVGEGRERFGHVFLFDT--GTSNGNLTGQ--ARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGE--HTKF  192 (611)
T ss_dssp             EEEECCSSCSEEEEETTT--CCBCBCCCCC--SSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECC--CSSC
T ss_pred             EEEECCCCceeEEEEeeC--CCCcceecCC--CCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeecc--ccCc
Confidence            998865    47888884  5555566655  77999999999987 599999999999999999888888876  7788


Q ss_pred             eeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeec------CCCCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370          156 RFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSS------NHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEI  227 (228)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~  227 (228)
                      +.++.|+|++.++++++. |+.|++||+++++....+..      +|.+.|.+++|+|++++|++++.|++|++||+.
T Consensus       193 V~~v~fspdg~~las~s~-D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~  269 (611)
T 1nr0_A          193 VHSVRYNPDGSLFASTGG-DGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVA  269 (611)
T ss_dssp             EEEEEECTTSSEEEEEET-TSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred             eEEEEECCCCCEEEEEEC-CCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence            999999999998888666 89999999999988877633      799999999999999999999999999999964

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=1.2e-39  Score=248.34  Aligned_cols=210  Identities=15%  Similarity=0.153  Sum_probs=173.0

Q ss_pred             EEEeecCcceEEEEEeC-CCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCC-CCCeEEEEecCCeEE
Q 040370           13 FRVIQDTHNVRSVSFHP-SGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSS-TGGMYVTASKDGAIR   90 (228)
Q Consensus        13 ~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~v~   90 (228)
                      .....|...|+|++|+| ++++||+|+.||.|+|||+.+++....... .+| .+.|++++|+| ++++|++|+.||+|+
T Consensus       113 ~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~-~gH-~~~V~~l~f~p~~~~~l~s~s~D~~v~  190 (435)
T 4e54_B          113 QKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKG-IGA-GGSITGLKFNPLNTNQFYASSMEGTTR  190 (435)
T ss_dssp             CEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECC-CSS-SCCCCEEEECSSCTTEEEEECSSSCEE
T ss_pred             ccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEc-cCC-CCCEEEEEEeCCCCCEEEEEeCCCEEE
Confidence            34557899999999999 677999999999999999987764333322 233 88999999998 688999999999999


Q ss_pred             EEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEE
Q 040370           91 LWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLS  170 (228)
Q Consensus        91 iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (228)
                      +||++++........+.....+.+++|+|++++|++|+.||.|++||++. +.+..+..  |...+.++.|+|++..+++
T Consensus       191 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~-~~~~~~~~--h~~~v~~v~~~p~~~~~~~  267 (435)
T 4e54_B          191 LQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDG-KELWNLRM--HKKKVTHVALNPCCDWFLA  267 (435)
T ss_dssp             EEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSS-CBCCCSBC--CSSCEEEEEECTTCSSEEE
T ss_pred             EeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCc-ceeEEEec--ccceEEeeeecCCCceEEE
Confidence            99998765444443333355678999999999999999999999999864 55555655  6778999999999987777


Q ss_pred             eeCCCCeEEEEEcCCcceeEEe--ecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370          171 IDEPSNEIVIWDALTAEKVAKW--SSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEI  227 (228)
Q Consensus       171 ~~~~d~~i~i~d~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~  227 (228)
                      +++.|+.|++||+++.+....+  ..+|...|++++|+|++++|++++.||.|++||+.
T Consensus       268 s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~  326 (435)
T 4e54_B          268 TASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSAS  326 (435)
T ss_dssp             EEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESS
T ss_pred             EecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECC
Confidence            7777999999999887654433  24799999999999999999999999999999964

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=4.3e-38  Score=247.25  Aligned_cols=202  Identities=20%  Similarity=0.426  Sum_probs=176.7

Q ss_pred             ceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeE
Q 040370           10 KRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAI   89 (228)
Q Consensus        10 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v   89 (228)
                      +....+.+|...|++++|+|++++|++++.|+.|++||.. ++....+.   .| ...|++++|+|++++|++++.|+.|
T Consensus       376 ~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~-~~~~~~~~---~~-~~~v~~~~~s~d~~~l~~~~~d~~v  450 (577)
T 2ymu_A          376 QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTLT---GH-SSSVWGVAFSPDDQTIASASDDKTV  450 (577)
T ss_dssp             CEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTT-CCEEEEEE---CC-SSCEEEEEECTTSSEEEEEETTSEE
T ss_pred             CEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCC-CCEEEEec---CC-CCCeEEEEECCCCCEEEEEcCCCEE
Confidence            4455666899999999999999999999999999999964 44444333   23 7899999999999999999999999


Q ss_pred             EEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEE
Q 040370           90 RLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVL  169 (228)
Q Consensus        90 ~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (228)
                      ++||. +++.+..+..+  ...|.+++|+|++++|++++.|+.|++||. +++.+..+.+  |...+.+++|+|++++++
T Consensus       451 ~~w~~-~~~~~~~~~~~--~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~~--h~~~v~~l~~s~dg~~l~  524 (577)
T 2ymu_A          451 KLWNR-NGQLLQTLTGH--SSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTG--HSSSVRGVAFSPDGQTIA  524 (577)
T ss_dssp             EEEET-TSCEEEEEECC--SSCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEEC--CSSCEEEEEECTTSSCEE
T ss_pred             EEEEC-CCCEEEEEcCC--CCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEeC--CCCCEEEEEEcCCCCEEE
Confidence            99996 56777777765  778999999999999999999999999995 6788888877  677889999999999998


Q ss_pred             EeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEee
Q 040370          170 SIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWK  225 (228)
Q Consensus       170 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd  225 (228)
                      +++. |+.|++||. +++.+..+ .+|.+.|++++|+|++++|+|++.|+.|++||
T Consensus       525 s~~~-dg~v~lwd~-~~~~~~~~-~~h~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd  577 (577)
T 2ymu_A          525 SASD-DKTVKLWNR-NGQLLQTL-TGHSSSVWGVAFSPDGQTIASASSDKTVKLWN  577 (577)
T ss_dssp             EEET-TSEEEEECT-TSCEEEEE-ECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             EEEC-cCEEEEEeC-CCCEEEEE-cCCCCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence            8665 899999995 67777777 79999999999999999999999999999997

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=3.2e-38  Score=232.93  Aligned_cols=209  Identities=14%  Similarity=0.213  Sum_probs=168.0

Q ss_pred             EeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCC--CCCeEEEEecCCeEEEE
Q 040370           15 VIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSS--TGGMYVTASKDGAIRLW   92 (228)
Q Consensus        15 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~~dg~v~iw   92 (228)
                      +.+|...|++++|+|++++|++|+.||.|++||+.++............|...|.+++|+|  ++++|++|+.||.|++|
T Consensus         7 ~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vw   86 (351)
T 3f3f_A            7 DSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLW   86 (351)
T ss_dssp             ECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEE
T ss_pred             CcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEE
Confidence            3589999999999999999999999999999999876422111111122388999999999  59999999999999999


Q ss_pred             eCCCC---------ceeeEEecccccceeEEEEECCC--CCEEEEeeCCCeEEEEEccCCeeEE----------------
Q 040370           93 DGVSA---------NCVRSIVGAHGTAEATSANFTKD--QRFVLSCGKDSTVKLWEVSSGRLVK----------------  145 (228)
Q Consensus        93 d~~~~---------~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~----------------  145 (228)
                      |++++         +....+..+  ...|.+++|+|+  ++++++++.|+.|++||+++++.+.                
T Consensus        87 d~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~  164 (351)
T 3f3f_A           87 EEDPDQEECSGRRWNKLCTLNDS--KGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPA  164 (351)
T ss_dssp             EECTTSCTTSSCSEEEEEEECCC--SSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCS
T ss_pred             ecCCCcccccccCcceeeeeccc--CCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccC
Confidence            99886         345555544  789999999999  9999999999999999987654211                


Q ss_pred             ------------------------------------------EEecceeeeeeeEEEECCCC----cEEEEeeCCCCeEE
Q 040370          146 ------------------------------------------QYLGATHTQLRFQAVFNDTE----EFVLSIDEPSNEIV  179 (228)
Q Consensus       146 ------------------------------------------~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~d~~i~  179 (228)
                                                                ......|...+.++.|+|++    .++++++ .||.|+
T Consensus       165 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~-~dg~i~  243 (351)
T 3f3f_A          165 NHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGC-KDGRIR  243 (351)
T ss_dssp             SCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEE-TTSCEE
T ss_pred             CcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEc-CCCeEE
Confidence                                                      11112256678899999998    5666654 589999


Q ss_pred             EEEcCCc----------------------------------------------ceeEEeecCCCCCcEEEEeCCCCcEEE
Q 040370          180 IWDALTA----------------------------------------------EKVAKWSSNHIGAPRWIEHSPAEAAFI  213 (228)
Q Consensus       180 i~d~~~~----------------------------------------------~~~~~~~~~~~~~v~~~~~~~~~~~l~  213 (228)
                      +||++++                                              +.+..+ .+|...|++++|+|++++|+
T Consensus       244 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~s~~~~~l~  322 (351)
T 3f3f_A          244 IFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEH-DDHNGEVWSVSWNLTGTILS  322 (351)
T ss_dssp             EEEEEECC---------------------------------------CCSEEEEEEEEE-CTTSSCEEEEEECSSSCCEE
T ss_pred             EEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEE-ecccccEEEEEEcCCCCEEE
Confidence            9999875                                              334444 68999999999999999999


Q ss_pred             EecCCCCEEEeeec
Q 040370          214 TCGTDRSVRFWKEI  227 (228)
Q Consensus       214 s~~~dg~i~vwd~~  227 (228)
                      +++.||.|++||+.
T Consensus       323 s~~~dg~v~iw~~~  336 (351)
T 3f3f_A          323 SAGDDGKVRLWKAT  336 (351)
T ss_dssp             EEETTSCEEEEEEC
T ss_pred             EecCCCcEEEEecC
Confidence            99999999999975

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=8e-38  Score=228.63  Aligned_cols=223  Identities=17%  Similarity=0.269  Sum_probs=181.8

Q ss_pred             CCcCCccccceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccce-------------------
Q 040370            1 FFDFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPE-------------------   61 (228)
Q Consensus         1 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~-------------------   61 (228)
                      |||..+.+..+.++..+|...|++++|+|++++|++|+.||.|++|++++++.+.....+.                   
T Consensus        49 iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~~~~~l~s~~~~  128 (318)
T 4ggc_A           49 LWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRS  128 (318)
T ss_dssp             EEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEETTEEEEEETT
T ss_pred             EEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEeecCCCEEEEEecC
Confidence            5888877766777777889999999999999999999999999999999887654432110                   


Q ss_pred             ------------------eeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCCCceeeE--EecccccceeEEEEECCCC
Q 040370           62 ------------------ISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRS--IVGAHGTAEATSANFTKDQ  121 (228)
Q Consensus        62 ------------------~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~--~~~~~~~~~i~~~~~~~~~  121 (228)
                                        ..|...+..+.++++++++++++.||.|++||+++++....  .....+...+.++.++|++
T Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  208 (318)
T 4ggc_A          129 GHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQ  208 (318)
T ss_dssp             SEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTS
T ss_pred             CceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCC
Confidence                              12366788999999999999999999999999988753211  1112226789999999966


Q ss_pred             CE---EEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEe-eCCCCeEEEEEcCCcceeEEeecCCC
Q 040370          122 RF---VLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSI-DEPSNEIVIWDALTAEKVAKWSSNHI  197 (228)
Q Consensus       122 ~~---l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~d~~i~i~d~~~~~~~~~~~~~~~  197 (228)
                      ..   +++++.++.|++||.+.........   +...+..+.+.|.+..++++ +..|+.|++||+++++.+..+ .+|.
T Consensus       209 ~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l-~gH~  284 (318)
T 4ggc_A          209 SNVLATGGGTSDRHIRIWNVCSGACLSAVD---AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAEL-KGHT  284 (318)
T ss_dssp             TTEEEEEECTTTCEEEEEETTTCCEEEEEE---CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEE-CCCS
T ss_pred             CcEEEEEecCCCCEEEEEeccccccccccc---ceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEE-cCCC
Confidence            53   3467789999999999877766554   45567788888988887765 456899999999999999988 7999


Q ss_pred             CCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370          198 GAPRWIEHSPAEAAFITCGTDRSVRFWKEI  227 (228)
Q Consensus       198 ~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~  227 (228)
                      +.|++++|+|++++|+|||.||+|+|||+.
T Consensus       285 ~~V~~l~~spdg~~l~S~s~D~~v~iWd~~  314 (318)
T 4ggc_A          285 SRVLSLTMSPDGATVASAAADETLRLWRCF  314 (318)
T ss_dssp             SCEEEEEECTTSSCEEEEETTTEEEEECCS
T ss_pred             CCEEEEEEcCCCCEEEEEecCCeEEEEECC
Confidence            999999999999999999999999999974

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=2.6e-37  Score=227.41  Aligned_cols=215  Identities=12%  Similarity=0.146  Sum_probs=187.0

Q ss_pred             CCcCCccccceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeE
Q 040370            1 FFDFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMY   80 (228)
Q Consensus         1 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l   80 (228)
                      +||+..........+..|...|.+++|+|++++|++++.|+.|++||+++++....+..   | ...|.+++|+|+++++
T Consensus       123 ~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~---~-~~~i~~~~~~~~~~~l  198 (337)
T 1gxr_A          123 IWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQG---H-TDGASCIDISNDGTKL  198 (337)
T ss_dssp             EEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC---C-SSCEEEEEECTTSSEE
T ss_pred             EEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeec---c-cCceEEEEECCCCCEE
Confidence            47777666556667778999999999999999999999999999999999887666543   2 7889999999999999


Q ss_pred             EEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEE
Q 040370           81 VTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAV  160 (228)
Q Consensus        81 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~  160 (228)
                      ++++.||.|++||+++++....+..   ...+.+++|+|+++++++++.|+.|++||+++++.. .+..  +...+..+.
T Consensus       199 ~~~~~dg~i~~~d~~~~~~~~~~~~---~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~-~~~~--~~~~v~~~~  272 (337)
T 1gxr_A          199 WTGGLDNTVRSWDLREGRQLQQHDF---TSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY-QLHL--HESCVLSLK  272 (337)
T ss_dssp             EEEETTSEEEEEETTTTEEEEEEEC---SSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE-EECC--CSSCEEEEE
T ss_pred             EEEecCCcEEEEECCCCceEeeecC---CCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeE-EEcC--CccceeEEE
Confidence            9999999999999999988877653   668999999999999999999999999999987654 3333  677899999


Q ss_pred             ECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeeecC
Q 040370          161 FNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEIL  228 (228)
Q Consensus       161 ~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~l  228 (228)
                      |+|+++++++++. |+.|++||+++++.....  .|...+.+++|+|++++|++++.||.|++||+.+
T Consensus       273 ~~~~~~~l~~~~~-dg~i~~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~  337 (337)
T 1gxr_A          273 FAYCGKWFVSTGK-DNLLNAWRTPYGASIFQS--KESSSVLSCDISVDDKYIVTGSGDKKATVYEVIY  337 (337)
T ss_dssp             ECTTSSEEEEEET-TSEEEEEETTTCCEEEEE--ECSSCEEEEEECTTSCEEEEEETTSCEEEEEEEC
T ss_pred             ECCCCCEEEEecC-CCcEEEEECCCCeEEEEe--cCCCcEEEEEECCCCCEEEEecCCCeEEEEEEeC
Confidence            9999999888766 799999999999887554  6889999999999999999999999999999874

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=2.9e-38  Score=249.83  Aligned_cols=218  Identities=15%  Similarity=0.200  Sum_probs=181.8

Q ss_pred             CCcCCccccceeEEEeecCcceEEEEEeCCCCEEEEecCC----CeEEEEEcccceEEeeeccceeeeccceeeEEeCCC
Q 040370            1 FFDFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDH----PIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSST   76 (228)
Q Consensus         1 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~   76 (228)
                      |||+..........+.+|..+|.+++|+|++++|++++.+    +.|++||.  ++....+   .+| ...|.+++|+|+
T Consensus        85 lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~--~~~~~~l---~gh-~~~v~~v~f~p~  158 (611)
T 1nr0_A           85 IWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDT--GTSNGNL---TGQ-ARAMNSVDFKPS  158 (611)
T ss_dssp             EEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTT--CCBCBCC---CCC-SSCEEEEEECSS
T ss_pred             EeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeC--CCCccee---cCC-CCCceEEEECCC
Confidence            5888655444555667899999999999999999988765    46777774  3332222   233 889999999999


Q ss_pred             CC-eEEEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecc-----
Q 040370           77 GG-MYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGA-----  150 (228)
Q Consensus        77 ~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~-----  150 (228)
                      +. .|++|+.|++|++||.++++....+..|  ...|.+++|+|++++|++++.|++|++||+.+++....+...     
T Consensus       159 ~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H--~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~  236 (611)
T 1nr0_A          159 RPFRIISGSDDNTVAIFEGPPFKFKSTFGEH--TKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNV  236 (611)
T ss_dssp             SSCEEEEEETTSCEEEEETTTBEEEEEECCC--SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSC
T ss_pred             CCeEEEEEeCCCeEEEEECCCCeEeeeeccc--cCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeecccccccc
Confidence            87 5999999999999999988888888776  779999999999999999999999999999999887776421     


Q ss_pred             eeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEe--------------------------------------
Q 040370          151 THTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKW--------------------------------------  192 (228)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~--------------------------------------  192 (228)
                      .|...+..+.|+|++.++++++. |+.|++||+++++....+                                      
T Consensus       237 ~h~~~V~~v~~spdg~~l~s~s~-D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~  315 (611)
T 1nr0_A          237 AHSGSVFGLTWSPDGTKIASASA-DKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGS  315 (611)
T ss_dssp             SSSSCEEEEEECTTSSEEEEEET-TSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTE
T ss_pred             ccCCCEEEEEECCCCCEEEEEeC-CCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCC
Confidence            37788999999999999888766 899999999887654332                                      


Q ss_pred             ----ecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370          193 ----SSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEI  227 (228)
Q Consensus       193 ----~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~  227 (228)
                          ..+|...|.+++|+|++++|++++.|+.|++||+.
T Consensus       316 ~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~  354 (611)
T 1nr0_A          316 IDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDIS  354 (611)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred             cceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECC
Confidence                24789999999999999999999999999999963

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.4e-39  Score=250.35  Aligned_cols=221  Identities=10%  Similarity=0.036  Sum_probs=175.2

Q ss_pred             CCcCCccccce--eEEEeecCcceEEEEEeCC------CCEEEEecCCCeEEEEEcccceEEe----ee----ccceeee
Q 040370            1 FFDFSKATAKR--AFRVIQDTHNVRSVSFHPS------GDFLLAGTDHPIAHLYDVNTFQCYL----SA----NVPEISV   64 (228)
Q Consensus         1 iwd~~~~~~~~--~~~~~~~~~~v~~~~~~~~------~~~l~~~~~d~~i~vw~~~~~~~~~----~~----~~~~~~~   64 (228)
                      |||+.......  ...+..|.+.|.+++|+|+      +.+||+++.||+|++||+..+....    ..    ..... |
T Consensus       187 iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~-h  265 (524)
T 2j04_B          187 IFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSL-A  265 (524)
T ss_dssp             EEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECC-T
T ss_pred             EEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEc-C
Confidence            57776543322  2334567889999999996      5799999999999999998764210    00    01112 3


Q ss_pred             ccceeeEEeCCCCCeEEEEecCCeEEEEeCCCCce-eeEEecccccceeEEE--EECCCC-CEEEEeeCCCeEEEEEccC
Q 040370           65 NGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANC-VRSIVGAHGTAEATSA--NFTKDQ-RFVLSCGKDSTVKLWEVSS  140 (228)
Q Consensus        65 ~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~~~~i~~~--~~~~~~-~~l~~~~~d~~i~~wd~~~  140 (228)
                      ...|++++|+|++ .|++|+.||+|++||++++.. ...+..|  ...|.++  .|+|++ .+|++++.|++|++||+++
T Consensus       266 ~~~v~sv~~s~~~-~lasgs~DgtV~lWD~~~~~~~~~~~~~H--~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~  342 (524)
T 2j04_B          266 DSLITTFDFLSPT-TVVCGFKNGFVAEFDLTDPEVPSFYDQVH--DSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKD  342 (524)
T ss_dssp             TTCEEEEEESSSS-EEEEEETTSEEEEEETTBCSSCSEEEECS--SSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGG
T ss_pred             CCCEEEEEecCCC-eEEEEeCCCEEEEEECCCCCCceEEeecc--cccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCC
Confidence            7899999999864 899999999999999997743 4456555  7789998  578887 8999999999999999999


Q ss_pred             CeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCC
Q 040370          141 GRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRS  220 (228)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~  220 (228)
                      ++.+..+.++.....+.+++|+|++..+++++. |+.|++||++++..+..+ .+|.+.|++++|+|++++|++|+.||+
T Consensus       343 ~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~-d~tv~lwd~~~~~~~~~l-~gH~~~V~sva~Sp~g~~l~Sgs~Dgt  420 (524)
T 2j04_B          343 IATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDG-ASSLRAVPSRAAFAVHPL-VSRETTITAIGVSRLHPMVLAGSADGS  420 (524)
T ss_dssp             HHHHCEEEEECSCCSCCCEEEETTTTEEEEECS-SSEEEEEETTCTTCCEEE-EECSSCEEEEECCSSCCBCEEEETTTE
T ss_pred             CCcccccccccccCcccceEeCCCcCeEEEeCC-CCcEEEEECcccccceee-ecCCCceEEEEeCCCCCeEEEEECCCE
Confidence            887766655322234678999999988777655 799999999999887777 579999999999999999999999999


Q ss_pred             EEEeeec
Q 040370          221 VRFWKEI  227 (228)
Q Consensus       221 i~vwd~~  227 (228)
                      |++||+.
T Consensus       421 v~lwd~~  427 (524)
T 2j04_B          421 LIITNAA  427 (524)
T ss_dssp             EECCBSC
T ss_pred             EEEEech
Confidence            9999863

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=7.9e-39  Score=234.19  Aligned_cols=220  Identities=16%  Similarity=0.187  Sum_probs=171.1

Q ss_pred             CCcCCccccceeEEEeecCcceEEEEEeC--CCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCC--
Q 040370            1 FFDFSKATAKRAFRVIQDTHNVRSVSFHP--SGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSST--   76 (228)
Q Consensus         1 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--   76 (228)
                      |||+..........+.+|..+|.+++|+|  ++++|++|+.|++|++||+++++..... ....| ...|.+++|+|+  
T Consensus        39 lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~-~~~~h-~~~V~~v~~~p~~~  116 (316)
T 3bg1_A           39 IFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSH-EHAGH-DSSVNSVCWAPHDY  116 (316)
T ss_dssp             EEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEE-EECCC-SSCCCEEEECCTTT
T ss_pred             EEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEE-EccCC-CCceEEEEECCCCC
Confidence            57776544344556778999999999986  4899999999999999999886421111 11123 789999999997  


Q ss_pred             CCeEEEEecCCeEEEEeCCCCcee---eEEecccccceeEEEEECCC-----------------CCEEEEeeCCCeEEEE
Q 040370           77 GGMYVTASKDGAIRLWDGVSANCV---RSIVGAHGTAEATSANFTKD-----------------QRFVLSCGKDSTVKLW  136 (228)
Q Consensus        77 ~~~l~~~~~dg~v~iwd~~~~~~~---~~~~~~~~~~~i~~~~~~~~-----------------~~~l~~~~~d~~i~~w  136 (228)
                      +.+|++|+.|+.|++||++.+...   ..+..  +...+.+++|+|+                 +++|++|+.|+.|++|
T Consensus       117 g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~--h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lW  194 (316)
T 3bg1_A          117 GLILACGSSDGAISLLTYTGEGQWEVKKINNA--HTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLW  194 (316)
T ss_dssp             CSCEEEECSSSCEEEEEECSSSCEEECCBTTS--SSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEE
T ss_pred             CcEEEEEcCCCCEEEEecCCCCCcceeeeecc--ccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEE
Confidence            789999999999999999876432   22222  3678899999997                 4689999999999999


Q ss_pred             EccCC---eeEEEEecceeeeeeeEEEECCCC----cEEEEeeCCCCeEEEEEcCCc---ceeEEeecCCCCCcEEEEeC
Q 040370          137 EVSSG---RLVKQYLGATHTQLRFQAVFNDTE----EFVLSIDEPSNEIVIWDALTA---EKVAKWSSNHIGAPRWIEHS  206 (228)
Q Consensus       137 d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~d~~i~i~d~~~~---~~~~~~~~~~~~~v~~~~~~  206 (228)
                      |++..   +....+.+  |...+.++.|+|++    .++++ ++.|+.|++||+++.   .........|...|.+++|+
T Consensus       195 d~~~~~~~~~~~~l~~--h~~~V~~v~~sp~~~~~~~~las-~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~s  271 (316)
T 3bg1_A          195 KEEEDGQWKEEQKLEA--HSDWVRDVAWAPSIGLPTSTIAS-CSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWS  271 (316)
T ss_dssp             EECTTSCEEEEECCBC--CSSCEEEEECCCCSSCSCCEEEE-EETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEEC
T ss_pred             EeCCCCccceeeeccc--CCCceEEEEecCCCCCCCceEEE-EcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEc
Confidence            99754   34555554  67789999999986    55555 555899999998763   21222225688999999999


Q ss_pred             CCCcEEEEecCCCCEEEeeec
Q 040370          207 PAEAAFITCGTDRSVRFWKEI  227 (228)
Q Consensus       207 ~~~~~l~s~~~dg~i~vwd~~  227 (228)
                      |++++|++++.||.|++|+..
T Consensus       272 p~g~~las~~~D~~v~lw~~~  292 (316)
T 3bg1_A          272 ITANILAVSGGDNKVTLWKES  292 (316)
T ss_dssp             TTTCCEEEEESSSCEEEEEEC
T ss_pred             CCCCEEEEEcCCCeEEEEEEC
Confidence            999999999999999999964

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=1.9e-37  Score=229.37  Aligned_cols=216  Identities=14%  Similarity=0.246  Sum_probs=171.7

Q ss_pred             CCcCCccc-----cceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCC
Q 040370            1 FFDFSKAT-----AKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSS   75 (228)
Q Consensus         1 iwd~~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~   75 (228)
                      |||+....     ......+.+|...|.+++|+|++.++++|+.|++|++||+++++....+..   | ...|.+++|+|
T Consensus        53 iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~---h-~~~v~~v~~sp  128 (343)
T 2xzm_R           53 IWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVG---H-QSEVYSVAFSP  128 (343)
T ss_dssp             EEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEEC---C-CSCEEEEEECS
T ss_pred             EEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcC---C-CCcEEEEEECC
Confidence            47765432     233445668999999999999999999999999999999999887665542   3 78999999999


Q ss_pred             CCCeEEEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCC----------CEEEEeeCCCeEEEEEccCCeeEE
Q 040370           76 TGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQ----------RFVLSCGKDSTVKLWEVSSGRLVK  145 (228)
Q Consensus        76 ~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~----------~~l~~~~~d~~i~~wd~~~~~~~~  145 (228)
                      ++++|++++.|+.|++||+.............+...+.+++|+|++          .++++++.|+.|++||. ..+...
T Consensus       129 ~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~  207 (343)
T 2xzm_R          129 DNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRY  207 (343)
T ss_dssp             STTEEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEE
T ss_pred             CCCEEEEEcCCCEEEEEeccCCceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeE
Confidence            9999999999999999999743322222122336789999999986          78999999999999994 456666


Q ss_pred             EEecceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcc-eeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEe
Q 040370          146 QYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAE-KVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFW  224 (228)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vw  224 (228)
                      .+..  |...+.++.|+|++.++++++. |+.|++||+++.. ....+  .+...|.+++|+|++.++++ +.|+.|++|
T Consensus       208 ~~~~--h~~~v~~~~~s~~g~~l~sgs~-dg~v~iwd~~~~~~~~~~~--~~~~~v~~v~~sp~~~~la~-~~d~~v~iw  281 (343)
T 2xzm_R          208 TFKA--HESNVNHLSISPNGKYIATGGK-DKKLLIWDILNLTYPQREF--DAGSTINQIAFNPKLQWVAV-GTDQGVKIF  281 (343)
T ss_dssp             EEEC--CSSCEEEEEECTTSSEEEEEET-TCEEEEEESSCCSSCSEEE--ECSSCEEEEEECSSSCEEEE-EESSCEEEE
T ss_pred             EEcC--ccccceEEEECCCCCEEEEEcC-CCeEEEEECCCCcccceee--cCCCcEEEEEECCCCCEEEE-ECCCCEEEE
Confidence            6665  6778899999999999988766 8999999995443 33333  34567999999999987765 468889999


Q ss_pred             eec
Q 040370          225 KEI  227 (228)
Q Consensus       225 d~~  227 (228)
                      |+.
T Consensus       282 ~~~  284 (343)
T 2xzm_R          282 NLM  284 (343)
T ss_dssp             ESS
T ss_pred             EeC
Confidence            963

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=3.8e-38  Score=230.59  Aligned_cols=206  Identities=14%  Similarity=0.181  Sum_probs=160.4

Q ss_pred             EeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCC--CCCeEEEEecCCeEEEE
Q 040370           15 VIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSS--TGGMYVTASKDGAIRLW   92 (228)
Q Consensus        15 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~~dg~v~iw   92 (228)
                      +.+|...|++++|+|++++||+|+.|++|++||+.+++.... ....+| ...|.+++|+|  ++++|++|+.|++|++|
T Consensus         9 ~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~-~~l~gH-~~~V~~v~~~~~~~~~~l~s~s~D~~v~iW   86 (316)
T 3bg1_A            9 DTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILI-ADLRGH-EGPVWQVAWAHPMYGNILASCSYDRKVIIW   86 (316)
T ss_dssp             -----CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEE-EEEECC-SSCEEEEEECCGGGSSCEEEEETTSCEEEE
T ss_pred             cccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEE-EEEcCC-CccEEEEEeCCCCCCCEEEEEECCCEEEEE
Confidence            347999999999999999999999999999999988753221 112233 88999999986  48899999999999999


Q ss_pred             eCCCCc--eeeEEecccccceeEEEEECCC--CCEEEEeeCCCeEEEEEccCCeeEE-EEecceeeeeeeEEEECCCC--
Q 040370           93 DGVSAN--CVRSIVGAHGTAEATSANFTKD--QRFVLSCGKDSTVKLWEVSSGRLVK-QYLGATHTQLRFQAVFNDTE--  165 (228)
Q Consensus        93 d~~~~~--~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--  165 (228)
                      |+++++  ....+..|  ...|.+++|+|+  +.+|++|+.|+.|++||++.+.... ......|...+..+.|+|+.  
T Consensus        87 d~~~~~~~~~~~~~~h--~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~  164 (316)
T 3bg1_A           87 REENGTWEKSHEHAGH--DSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVP  164 (316)
T ss_dssp             CCSSSCCCEEEEECCC--SSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC
T ss_pred             ECCCCcceEEEEccCC--CCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCC
Confidence            999874  34444444  778999999997  7899999999999999998753221 11122356677788888873  


Q ss_pred             ---------------cEEEEeeCCCCeEEEEEcCCcc---eeEEeecCCCCCcEEEEeCCCC----cEEEEecCCCCEEE
Q 040370          166 ---------------EFVLSIDEPSNEIVIWDALTAE---KVAKWSSNHIGAPRWIEHSPAE----AAFITCGTDRSVRF  223 (228)
Q Consensus       166 ---------------~~~~~~~~~d~~i~i~d~~~~~---~~~~~~~~~~~~v~~~~~~~~~----~~l~s~~~dg~i~v  223 (228)
                                     .+++ +++.|+.|++||++...   ....+ .+|...|.+++|+|++    .+|++++.||+|++
T Consensus       165 ~~~~~~~~~~~~~~~~~l~-sgs~D~~v~lWd~~~~~~~~~~~~l-~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~i  242 (316)
T 3bg1_A          165 GSLIDHPSGQKPNYIKRFA-SGGCDNLIKLWKEEEDGQWKEEQKL-EAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFI  242 (316)
T ss_dssp             ------CCSCCCCCCCBEE-CCBTTSBCCEEEECTTSCEEEEECC-BCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEE
T ss_pred             ccccccccccCccccceEE-EecCCCeEEEEEeCCCCccceeeec-ccCCCceEEEEecCCCCCCCceEEEEcCCCeEEE
Confidence                           3455 45668999999997552   34444 6899999999999986    78999999999999


Q ss_pred             eee
Q 040370          224 WKE  226 (228)
Q Consensus       224 wd~  226 (228)
                      |++
T Consensus       243 w~~  245 (316)
T 3bg1_A          243 WTC  245 (316)
T ss_dssp             EEC
T ss_pred             EEc
Confidence            986

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.7e-37  Score=230.02  Aligned_cols=222  Identities=17%  Similarity=0.256  Sum_probs=178.4

Q ss_pred             CCcCCccccceeEEEeecCcceEEEEEeCC--CCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCC--
Q 040370            1 FFDFSKATAKRAFRVIQDTHNVRSVSFHPS--GDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSST--   76 (228)
Q Consensus         1 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--   76 (228)
                      |||+.....+....+.+|...|++++|+|+  +++|++|+.||.|++||+.+++....... ..| ...|.+++|+|+  
T Consensus        37 iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~-~~~-~~~v~~~~~~~~~~  114 (379)
T 3jrp_A           37 IFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVH-AVH-SASVNSVQWAPHEY  114 (379)
T ss_dssp             EEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEE-CCC-SSCEEEEEECCGGG
T ss_pred             EEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeee-cCC-CcceEEEEeCCCCC
Confidence            577765555666677789999999999986  99999999999999999999863222211 122 788999999999  


Q ss_pred             CCeEEEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECC-------------CCCEEEEeeCCCeEEEEEccCCee
Q 040370           77 GGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTK-------------DQRFVLSCGKDSTVKLWEVSSGRL  143 (228)
Q Consensus        77 ~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~-------------~~~~l~~~~~d~~i~~wd~~~~~~  143 (228)
                      ++++++++.||.|++||++++..........+...|.+++|+|             ++.++++++.|+.|++||+++++.
T Consensus       115 ~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~  194 (379)
T 3jrp_A          115 GPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQ  194 (379)
T ss_dssp             CSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTT
T ss_pred             CCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCc
Confidence            9999999999999999999875443333333378999999999             699999999999999999987653


Q ss_pred             ----EEEEecceeeeeeeEEEECCC---CcEEEEeeCCCCeEEEEEcCCccee---EE-eecCCCCCcEEEEeCCCCcEE
Q 040370          144 ----VKQYLGATHTQLRFQAVFNDT---EEFVLSIDEPSNEIVIWDALTAEKV---AK-WSSNHIGAPRWIEHSPAEAAF  212 (228)
Q Consensus       144 ----~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~d~~i~i~d~~~~~~~---~~-~~~~~~~~v~~~~~~~~~~~l  212 (228)
                          ...+..  |...+.++.|+|+   +.++++++. ||.|++||++++...   .. ....|...|.+++|+|++++|
T Consensus       195 ~~~~~~~~~~--h~~~v~~~~~sp~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l  271 (379)
T 3jrp_A          195 TYVLESTLEG--HSDWVRDVAWSPTVLLRSYLASVSQ-DRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVL  271 (379)
T ss_dssp             EEEEEEEECC--CSSCEEEEEECCCCSSSEEEEEEET-TSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCE
T ss_pred             ceeeEEEEec--ccCcEeEEEECCCCCCCCeEEEEeC-CCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEE
Confidence                233433  6778999999999   777777655 899999999987421   11 113488899999999999999


Q ss_pred             EEecCCCCEEEeeec
Q 040370          213 ITCGTDRSVRFWKEI  227 (228)
Q Consensus       213 ~s~~~dg~i~vwd~~  227 (228)
                      ++++.||.|++|++.
T Consensus       272 ~~~~~dg~i~iw~~~  286 (379)
T 3jrp_A          272 ALSGGDNKVTLWKEN  286 (379)
T ss_dssp             EEEESSSSEEEEEEE
T ss_pred             EEecCCCcEEEEeCC
Confidence            999999999999974

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.1e-37  Score=229.24  Aligned_cols=207  Identities=14%  Similarity=0.205  Sum_probs=172.0

Q ss_pred             EEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccc--eEEeeeccceeeeccceeeEEeCCC--CCeEEEEecCCe
Q 040370           13 FRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTF--QCYLSANVPEISVNGAINQVRYSST--GGMYVTASKDGA   88 (228)
Q Consensus        13 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~--~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~dg~   88 (228)
                      ..+.+|...|++++|+|++++|++|+.||.|++|++...  +....+.   .| ...|++++|+|+  +++|++|+.||.
T Consensus         5 ~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~---~h-~~~v~~~~~~~~~~~~~l~s~~~dg~   80 (379)
T 3jrp_A            5 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLT---GH-EGPVWRVDWAHPKFGTILASCSYDGK   80 (379)
T ss_dssp             CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEEC---CC-SSCEEEEEECCGGGCSEEEEEETTSC
T ss_pred             EEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEec---CC-CCcEEEEEeCCCCCCCEEEEeccCCE
Confidence            345689999999999999999999999999999999843  3333332   23 789999999987  899999999999


Q ss_pred             EEEEeCCCCc--eeeEEecccccceeEEEEECCC--CCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECC-
Q 040370           89 IRLWDGVSAN--CVRSIVGAHGTAEATSANFTKD--QRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFND-  163 (228)
Q Consensus        89 v~iwd~~~~~--~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~-  163 (228)
                      |++||+++++  ....+..+  ...|.+++|+|+  +.++++++.|+.|++||++++..........+...+.++.|+| 
T Consensus        81 v~iwd~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~  158 (379)
T 3jrp_A           81 VLIWKEENGRWSQIAVHAVH--SASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPA  158 (379)
T ss_dssp             EEEEEEETTEEEEEEEECCC--SSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCC
T ss_pred             EEEEEcCCCceeEeeeecCC--CcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCc
Confidence            9999999887  44444443  789999999999  9999999999999999999875433333333677889999999 


Q ss_pred             ------------CCcEEEEeeCCCCeEEEEEcCCccee----EEeecCCCCCcEEEEeCCC---CcEEEEecCCCCEEEe
Q 040370          164 ------------TEEFVLSIDEPSNEIVIWDALTAEKV----AKWSSNHIGAPRWIEHSPA---EAAFITCGTDRSVRFW  224 (228)
Q Consensus       164 ------------~~~~~~~~~~~d~~i~i~d~~~~~~~----~~~~~~~~~~v~~~~~~~~---~~~l~s~~~dg~i~vw  224 (228)
                                  ++.++++++. |+.|++||++++...    ..+ .+|...|.+++|+|+   +.+|++++.||.|++|
T Consensus       159 ~~~~~~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~-~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iw  236 (379)
T 3jrp_A          159 TIEEDGEHNGTKESRKFVTGGA-DNLVKIWKYNSDAQTYVLESTL-EGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIW  236 (379)
T ss_dssp             C----------CTTCEEEEEET-TSCEEEEEEETTTTEEEEEEEE-CCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEE
T ss_pred             cccccccccCCCCCCEEEEEeC-CCeEEEEEecCCCcceeeEEEE-ecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEE
Confidence                        5777777655 899999999876532    333 689999999999999   8999999999999999


Q ss_pred             eec
Q 040370          225 KEI  227 (228)
Q Consensus       225 d~~  227 (228)
                      |+.
T Consensus       237 d~~  239 (379)
T 3jrp_A          237 TQD  239 (379)
T ss_dssp             EES
T ss_pred             eCC
Confidence            974

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=2.5e-36  Score=222.21  Aligned_cols=217  Identities=21%  Similarity=0.327  Sum_probs=183.0

Q ss_pred             CCcCCccccceeE-EE--eecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCC
Q 040370            1 FFDFSKATAKRAF-RV--IQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTG   77 (228)
Q Consensus         1 iwd~~~~~~~~~~-~~--~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~   77 (228)
                      |||+......... .+  .+|...|.+++|+|++++|++++.|+.|++||+.+++.......  ..+...|.+++|+|++
T Consensus        76 iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~--~~~~~~i~~~~~~~~~  153 (337)
T 1gxr_A           76 VWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAEL--TSSAPACYALAISPDS  153 (337)
T ss_dssp             EEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEE--ECSSSCEEEEEECTTS
T ss_pred             EEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeec--ccCCCceEEEEECCCC
Confidence            5777765433222 22  26899999999999999999999999999999998763222211  1227789999999999


Q ss_pred             CeEEEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeee
Q 040370           78 GMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRF  157 (228)
Q Consensus        78 ~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~  157 (228)
                      +++++++.||.|++||+++++....+..+  ...+.+++|+|+++++++++.|+.|++||+++++.+..+.   +...+.
T Consensus       154 ~~l~~~~~dg~v~~~d~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~---~~~~v~  228 (337)
T 1gxr_A          154 KVCFSCCSDGNIAVWDLHNQTLVRQFQGH--TDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD---FTSQIF  228 (337)
T ss_dssp             SEEEEEETTSCEEEEETTTTEEEEEECCC--SSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE---CSSCEE
T ss_pred             CEEEEEeCCCcEEEEeCCCCceeeeeecc--cCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeec---CCCceE
Confidence            99999999999999999999988888765  6789999999999999999999999999999998877765   456788


Q ss_pred             EEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370          158 QAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEI  227 (228)
Q Consensus       158 ~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~  227 (228)
                      .+.|+|++.++++++. |+.|++||+++++... + ..|...|.+++|+|++++|++++.||.|++||+.
T Consensus       229 ~~~~s~~~~~l~~~~~-~~~i~~~~~~~~~~~~-~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~  295 (337)
T 1gxr_A          229 SLGYCPTGEWLAVGME-SSNVEVLHVNKPDKYQ-L-HLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTP  295 (337)
T ss_dssp             EEEECTTSSEEEEEET-TSCEEEEETTSSCEEE-E-CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred             EEEECCCCCEEEEEcC-CCcEEEEECCCCCeEE-E-cCCccceeEEEECCCCCEEEEecCCCcEEEEECC
Confidence            9999999999988766 7999999999887643 3 5899999999999999999999999999999964

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=4.3e-37  Score=232.00  Aligned_cols=225  Identities=15%  Similarity=0.215  Sum_probs=178.9

Q ss_pred             CCcCCcccc--ceeEEEeecCcceEEEEEeC-CCCEEEEecCCCeEEEEEcccceEEe----eeccceeeeccceeeEEe
Q 040370            1 FFDFSKATA--KRAFRVIQDTHNVRSVSFHP-SGDFLLAGTDHPIAHLYDVNTFQCYL----SANVPEISVNGAINQVRY   73 (228)
Q Consensus         1 iwd~~~~~~--~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~vw~~~~~~~~~----~~~~~~~~~~~~i~~~~~   73 (228)
                      |||+.....  .....+.+|...|++++|+| ++++|++|+.||.|++||+.++....    ....... |...|.+++|
T Consensus        61 v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~  139 (402)
T 2aq5_A           61 VLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEG-HTKRVGIVAW  139 (402)
T ss_dssp             EEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEEC-CSSCEEEEEE
T ss_pred             EEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecC-CCCeEEEEEE
Confidence            466643221  22334557999999999999 99999999999999999999874211    1111122 3889999999


Q ss_pred             CCCC-CeEEEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEE-ecce
Q 040370           74 SSTG-GMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQY-LGAT  151 (228)
Q Consensus        74 ~~~~-~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~-~~~~  151 (228)
                      +|++ ++|++++.||.|++||+++++....+....+...|.+++|+|++++|++++.|+.|++||+++++.+..+ ..+ 
T Consensus       140 ~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-  218 (402)
T 2aq5_A          140 HPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPH-  218 (402)
T ss_dssp             CSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSS-
T ss_pred             CcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCC-
Confidence            9998 6999999999999999999998888831222779999999999999999999999999999999988887 342 


Q ss_pred             eeeeeeEEEECCCCcEEEEee--CCCCeEEEEEcCCcce-eEEeecCCCCCcEEEEeCCCCcEEE-EecCCCCEEEeeec
Q 040370          152 HTQLRFQAVFNDTEEFVLSID--EPSNEIVIWDALTAEK-VAKWSSNHIGAPRWIEHSPAEAAFI-TCGTDRSVRFWKEI  227 (228)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~--~~d~~i~i~d~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~-s~~~dg~i~vwd~~  227 (228)
                      ....+..+.|+|++.+++++.  +.|+.|++||+++++. .......|...+.+++|+|++++|+ +++.||.|++||+.
T Consensus       219 ~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~  298 (402)
T 2aq5_A          219 EGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEIT  298 (402)
T ss_dssp             CSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEEC
T ss_pred             CCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEec
Confidence            233478899999988877762  4589999999998765 3333346788899999999999886 55579999999974

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=1.2e-37  Score=236.08  Aligned_cols=201  Identities=16%  Similarity=0.225  Sum_probs=174.2

Q ss_pred             cceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCCCce
Q 040370           20 HNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANC   99 (228)
Q Consensus        20 ~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~   99 (228)
                      ..+....|+|++++|++|+.||.|++||+.+++....+..   | ...|++++|+|++++|++|+.||.|++||+++++.
T Consensus        98 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---h-~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~  173 (420)
T 3vl1_A           98 DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQA---H-VSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSN  173 (420)
T ss_dssp             CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETTS---S-SSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCC
T ss_pred             CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeeccc---c-cCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcC
Confidence            4455557899999999999999999999998877654432   2 78999999999999999999999999999999999


Q ss_pred             eeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecce-e---------------------eeeee
Q 040370          100 VRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGAT-H---------------------TQLRF  157 (228)
Q Consensus       100 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~-~---------------------~~~~~  157 (228)
                      +..+..|  ...|.+++|+|++++|++++.|+.|++||+++++.+..+..+. +                     ...+.
T Consensus       174 ~~~~~~h--~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~  251 (420)
T 3vl1_A          174 PRTLIGH--RATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKN  251 (420)
T ss_dssp             CEEEECC--SSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCC
T ss_pred             ceEEcCC--CCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCccc
Confidence            8888766  7799999999999999999999999999999999888876422 1                     13344


Q ss_pred             EEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCc-EEEEecCCCCEEEeeec
Q 040370          158 QAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEA-AFITCGTDRSVRFWKEI  227 (228)
Q Consensus       158 ~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~dg~i~vwd~~  227 (228)
                      .+.|+|++.++++++. ||.|++||+++++....+...|...|.+++|+|++. +|++++.||.|++||+.
T Consensus       252 ~~~~s~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~  321 (420)
T 3vl1_A          252 NLEFGTYGKYVIAGHV-SGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLR  321 (420)
T ss_dssp             TTCSSCTTEEEEEEET-TSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETT
T ss_pred             ceEEcCCCCEEEEEcC-CCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcC
Confidence            4566888988888666 799999999999988888777999999999999998 99999999999999974

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=1e-36  Score=227.22  Aligned_cols=219  Identities=11%  Similarity=0.077  Sum_probs=184.2

Q ss_pred             CCcCCccccceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeE
Q 040370            1 FFDFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMY   80 (228)
Q Consensus         1 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l   80 (228)
                      |||+..........+.+|...|.+++|+|++++|++++.|+.|++||+++++........ . |...|.+++|+|++++|
T Consensus        34 i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-~-~~~~v~~~~~~~~~~~l  111 (372)
T 1k8k_C           34 IYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVIL-R-INRAARCVRWAPNEKKF  111 (372)
T ss_dssp             EEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECC-C-CSSCEEEEEECTTSSEE
T ss_pred             EEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEee-c-CCCceeEEEECCCCCEE
Confidence            466665543456666789999999999999999999999999999999988754443321 2 27889999999999999


Q ss_pred             EEEecCCeEEEEeCCCCce---eeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEcc------------------
Q 040370           81 VTASKDGAIRLWDGVSANC---VRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVS------------------  139 (228)
Q Consensus        81 ~~~~~dg~v~iwd~~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~------------------  139 (228)
                      ++++.||.|++||++.++.   ...+... +...|.+++|+|++++|++++.|+.|++||++                  
T Consensus       112 ~~~~~d~~v~i~d~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~  190 (372)
T 1k8k_C          112 AVGSGSRVISICYFEQENDWWVCKHIKKP-IRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMP  190 (372)
T ss_dssp             EEEETTSSEEEEEEETTTTEEEEEEECTT-CCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCC
T ss_pred             EEEeCCCEEEEEEecCCCcceeeeeeecc-cCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccc
Confidence            9999999999999988763   3333332 37789999999999999999999999999954                  


Q ss_pred             CCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCC
Q 040370          140 SGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDR  219 (228)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg  219 (228)
                      .++.+..+..  +...+.++.|+|++.++++++. |+.|++||+++++.+..+ ..|..+|.+++|+|++.+|+++ .|+
T Consensus       191 ~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~-d~~i~i~d~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~-~d~  265 (372)
T 1k8k_C          191 FGELMFESSS--SCGWVHGVCFSANGSRVAWVSH-DSTVCLADADKKMAVATL-ASETLPLLAVTFITESSLVAAG-HDC  265 (372)
T ss_dssp             TTCEEEECCC--CSSCEEEEEECSSSSEEEEEET-TTEEEEEEGGGTTEEEEE-ECSSCCEEEEEEEETTEEEEEE-TTS
T ss_pred             hhhheEecCC--CCCeEEEEEECCCCCEEEEEeC-CCEEEEEECCCCceeEEE-ccCCCCeEEEEEecCCCEEEEE-eCC
Confidence            5666666654  6778899999999998888765 899999999999988888 6888999999999999988887 899


Q ss_pred             CEEEeeec
Q 040370          220 SVRFWKEI  227 (228)
Q Consensus       220 ~i~vwd~~  227 (228)
                      .|++|++.
T Consensus       266 ~i~i~~~~  273 (372)
T 1k8k_C          266 FPVLFTYD  273 (372)
T ss_dssp             SCEEEEEE
T ss_pred             eEEEEEcc
Confidence            99999974

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.3e-36  Score=224.82  Aligned_cols=212  Identities=16%  Similarity=0.240  Sum_probs=182.2

Q ss_pred             cccceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecC
Q 040370            7 ATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKD   86 (228)
Q Consensus         7 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d   86 (228)
                      +...+...+.+|...|++++|+|++++|++|+.||.|++||+.+++....+..   | ...|.+++|+|++++|++++.|
T Consensus        20 G~~~~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~---h-~~~v~~~~~~~~~~~l~s~~~d   95 (369)
T 3zwl_B           20 GSHMKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDG---H-TGTIWSIDVDCFTKYCVTGSAD   95 (369)
T ss_dssp             CCSEEEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECC---C-SSCEEEEEECTTSSEEEEEETT
T ss_pred             ccccccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhh---c-CCcEEEEEEcCCCCEEEEEeCC
Confidence            34456778889999999999999999999999999999999999887766543   2 7889999999999999999999


Q ss_pred             CeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCC-----CeEEEEEccCCee-----------EEEEecc
Q 040370           87 GAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKD-----STVKLWEVSSGRL-----------VKQYLGA  150 (228)
Q Consensus        87 g~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----~~i~~wd~~~~~~-----------~~~~~~~  150 (228)
                      |.|++||+++++....+..   ...+.+++|+|+++++++++.+     +.|++||++....           ...+..+
T Consensus        96 g~i~iwd~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~  172 (369)
T 3zwl_B           96 YSIKLWDVSNGQCVATWKS---PVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITH  172 (369)
T ss_dssp             TEEEEEETTTCCEEEEEEC---SSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECC
T ss_pred             CeEEEEECCCCcEEEEeec---CCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCC
Confidence            9999999999998888872   6789999999999999999999     9999999987542           2223332


Q ss_pred             eeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCC-cceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370          151 THTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALT-AEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEI  227 (228)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~  227 (228)
                      .....+..+.|+|++.++++++. |+.|++||+++ .+....+ ..|...|.+++|+|++++|++++.||.|++||+.
T Consensus       173 ~~~~~~~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~  248 (369)
T 3zwl_B          173 EGLDAATVAGWSTKGKYIIAGHK-DGKISKYDVSNNYEYVDSI-DLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVS  248 (369)
T ss_dssp             TTCCCEEEEEECGGGCEEEEEET-TSEEEEEETTTTTEEEEEE-ECCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred             cCccceeEEEEcCCCCEEEEEcC-CCEEEEEECCCCcEeEEEE-ecCCCceeEEEECCCCCEEEEecCCceEEEEECC
Confidence            22237889999999999888666 79999999998 5555555 7899999999999999999999999999999964

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=8e-37  Score=244.91  Aligned_cols=217  Identities=18%  Similarity=0.286  Sum_probs=179.3

Q ss_pred             CCcCCccccceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCC--C
Q 040370            1 FFDFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTG--G   78 (228)
Q Consensus         1 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~   78 (228)
                      |||+...  .....+.+|...|.+++|+|++++|++|+.|++|++||...............| ...|.+++|+|++  .
T Consensus       456 vwd~~~~--~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~~  532 (694)
T 3dm0_A          456 LWDLAAG--VSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGH-RDWVSCVRFSPNTLQP  532 (694)
T ss_dssp             EEETTTT--EEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSC-SSCEEEEEECSCSSSC
T ss_pred             EEECCCC--cceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCC-CCcEEEEEEeCCCCcc
Confidence            5777643  345566789999999999999999999999999999998765443333322333 7889999999986  5


Q ss_pred             eEEEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeE
Q 040370           79 MYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQ  158 (228)
Q Consensus        79 ~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~  158 (228)
                      .+++|+.|+.|++||+++++....+..|  ...|.+++|+|++++|++|+.|+.|++||+++++.+..+..   ...+..
T Consensus       533 ~l~s~s~d~~v~vwd~~~~~~~~~~~~h--~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~---~~~v~~  607 (694)
T 3dm0_A          533 TIVSASWDKTVKVWNLSNCKLRSTLAGH--TGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEA---NSVIHA  607 (694)
T ss_dssp             EEEEEETTSCEEEEETTTCCEEEEECCC--SSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBC---SSCEEE
T ss_pred             eEEEEeCCCeEEEEECCCCcEEEEEcCC--CCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecC---CCcEEE
Confidence            8999999999999999999988888776  77899999999999999999999999999999988877653   456888


Q ss_pred             EEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecC------------------CCCCcEEEEeCCCCcEEEEecCCCC
Q 040370          159 AVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSN------------------HIGAPRWIEHSPAEAAFITCGTDRS  220 (228)
Q Consensus       159 ~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~------------------~~~~v~~~~~~~~~~~l~s~~~dg~  220 (228)
                      ++|+|++.+++++.  ++.|++||+++++.+..+...                  +...+++++|+|++++|++|+.||.
T Consensus       608 ~~~sp~~~~l~~~~--~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~  685 (694)
T 3dm0_A          608 LCFSPNRYWLCAAT--EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGV  685 (694)
T ss_dssp             EEECSSSSEEEEEE--TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSE
T ss_pred             EEEcCCCcEEEEEc--CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCe
Confidence            99999988777654  477999999998877665211                  1123688999999999999999999


Q ss_pred             EEEeeec
Q 040370          221 VRFWKEI  227 (228)
Q Consensus       221 i~vwd~~  227 (228)
                      |++|++.
T Consensus       686 i~iW~i~  692 (694)
T 3dm0_A          686 IRVWGIG  692 (694)
T ss_dssp             EEEEEC-
T ss_pred             EEEEecc
Confidence            9999974

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=1.2e-36  Score=228.10  Aligned_cols=209  Identities=13%  Similarity=0.146  Sum_probs=174.8

Q ss_pred             eeEEEeecCcceEEEEEeCCC-CEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCC-CCCeEEEEecCCe
Q 040370           11 RAFRVIQDTHNVRSVSFHPSG-DFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSS-TGGMYVTASKDGA   88 (228)
Q Consensus        11 ~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~   88 (228)
                      ....+.+|...|++++|+|++ ++|++|+.||.|++||+.+++....... .. |...|.+++|+| ++++|++++.|+.
T Consensus        65 ~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~-h~~~v~~~~~~~~~~~~l~s~~~d~~  142 (383)
T 3ei3_B           65 LHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQG-MG-PGDAITGMKFNQFNTNQLFVSSIRGA  142 (383)
T ss_dssp             EEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECC-CS-TTCBEEEEEEETTEEEEEEEEETTTE
T ss_pred             eEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeec-CC-cCCceeEEEeCCCCCCEEEEEeCCCE
Confidence            344566899999999999998 9999999999999999998776554432 12 388999999999 7899999999999


Q ss_pred             EEEEeCCCCceeeEEecc-cccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcE
Q 040370           89 IRLWDGVSANCVRSIVGA-HGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEF  167 (228)
Q Consensus        89 v~iwd~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (228)
                      |++||++. .....+..+ .+...+.+++|+|++++|++++.|+.|++||+ +++.+..+..  |...+.++.|+|++.+
T Consensus       143 i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~--h~~~v~~~~~~~~~~~  218 (383)
T 3ei3_B          143 TTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKL--HKAKVTHAEFNPRCDW  218 (383)
T ss_dssp             EEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEEC--SSSCEEEEEECSSCTT
T ss_pred             EEEEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEecc--CCCcEEEEEECCCCCC
Confidence            99999986 444455443 22467999999999999999999999999999 4677777766  6778999999999994


Q ss_pred             EEEeeCCCCeEEEEEcCC----cceeEEeecCCCCCcEEEEeCC-CCcEEEEecCCCCEEEeeec
Q 040370          168 VLSIDEPSNEIVIWDALT----AEKVAKWSSNHIGAPRWIEHSP-AEAAFITCGTDRSVRFWKEI  227 (228)
Q Consensus       168 ~~~~~~~d~~i~i~d~~~----~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~vwd~~  227 (228)
                      ++++++.|+.|++||+++    +.....+  +|...|.+++|+| ++++|++++.|+.|++||+.
T Consensus       219 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~  281 (383)
T 3ei3_B          219 LMATSSVDATVKLWDLRNIKDKNSYIAEM--PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSY  281 (383)
T ss_dssp             EEEEEETTSEEEEEEGGGCCSTTCEEEEE--ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETT
T ss_pred             EEEEEeCCCEEEEEeCCCCCcccceEEEe--cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECC
Confidence            444455589999999998    4455554  6999999999999 99999999999999999964

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=1.5e-36  Score=243.31  Aligned_cols=210  Identities=20%  Similarity=0.290  Sum_probs=175.3

Q ss_pred             EEEeecCcceEEEEEeCC-CCEEEEecCCCeEEEEEcccceEE--eeeccceeeeccceeeEEeCCCCCeEEEEecCCeE
Q 040370           13 FRVIQDTHNVRSVSFHPS-GDFLLAGTDHPIAHLYDVNTFQCY--LSANVPEISVNGAINQVRYSSTGGMYVTASKDGAI   89 (228)
Q Consensus        13 ~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~vw~~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v   89 (228)
                      -.+.+|...|++++|+|+ +++|++|+.|++|++|++.+....  .......+| ...|.+++|+|++++|++|+.||.|
T Consensus       376 ~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h-~~~v~~v~~s~~g~~l~sgs~Dg~v  454 (694)
T 3dm0_A          376 GTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGH-SHFVEDVVLSSDGQFALSGSWDGEL  454 (694)
T ss_dssp             EEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECC-SSCEEEEEECTTSSEEEEEETTSEE
T ss_pred             hhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCC-CCcEEEEEECCCCCEEEEEeCCCcE
Confidence            356689999999999986 579999999999999999764311  111122233 8899999999999999999999999


Q ss_pred             EEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEe-cceeeeeeeEEEECCCC--c
Q 040370           90 RLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYL-GATHTQLRFQAVFNDTE--E  166 (228)
Q Consensus        90 ~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--~  166 (228)
                      ++||+.+++....+..|  ...|.+++|+|++++|++++.|++|++||+.......... ...|...+.++.|+|++  .
T Consensus       455 ~vwd~~~~~~~~~~~~h--~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~  532 (694)
T 3dm0_A          455 RLWDLAAGVSTRRFVGH--TKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQP  532 (694)
T ss_dssp             EEEETTTTEEEEEEECC--SSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSC
T ss_pred             EEEECCCCcceeEEeCC--CCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcc
Confidence            99999999998888876  7789999999999999999999999999987544332221 23366778999999987  3


Q ss_pred             EEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370          167 FVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEI  227 (228)
Q Consensus       167 ~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~  227 (228)
                      .+++ ++.|+.|++||+++++....+ .+|.+.|++++|+|++++|++++.||.|++||+.
T Consensus       533 ~l~s-~s~d~~v~vwd~~~~~~~~~~-~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~  591 (694)
T 3dm0_A          533 TIVS-ASWDKTVKVWNLSNCKLRSTL-AGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLA  591 (694)
T ss_dssp             EEEE-EETTSCEEEEETTTCCEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSBCEEEETT
T ss_pred             eEEE-EeCCCeEEEEECCCCcEEEEE-cCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECC
Confidence            4555 555899999999999888777 7899999999999999999999999999999974

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=1.1e-37  Score=236.15  Aligned_cols=217  Identities=15%  Similarity=0.209  Sum_probs=177.2

Q ss_pred             CCcCCccccceeEEE-eecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCe
Q 040370            1 FFDFSKATAKRAFRV-IQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGM   79 (228)
Q Consensus         1 iwd~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~   79 (228)
                      |||+...   ..... .+|...|++++|+|++++|++|+.|+.|++||+.+++....+.   .| ...|.+++|+|++++
T Consensus       123 iwd~~~~---~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~---~h-~~~v~~~~~~~~~~~  195 (420)
T 3vl1_A          123 VLDSNFN---LQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLI---GH-RATVTDIAIIDRGRN  195 (420)
T ss_dssp             EECTTSC---EEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEE---CC-SSCEEEEEEETTTTE
T ss_pred             EEeCCCc---ceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEc---CC-CCcEEEEEEcCCCCE
Confidence            4776633   23333 4899999999999999999999999999999999887665543   23 889999999999999


Q ss_pred             EEEEecCCeEEEEeCCCCceeeEEeccc-cc---------------------ceeEEEEECCCCCEEEEeeCCCeEEEEE
Q 040370           80 YVTASKDGAIRLWDGVSANCVRSIVGAH-GT---------------------AEATSANFTKDQRFVLSCGKDSTVKLWE  137 (228)
Q Consensus        80 l~~~~~dg~v~iwd~~~~~~~~~~~~~~-~~---------------------~~i~~~~~~~~~~~l~~~~~d~~i~~wd  137 (228)
                      |++++.||.|++||+++++....+..+. +.                     ..+.+++|+|++++|++++.||.|++||
T Consensus       196 l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d  275 (420)
T 3vl1_A          196 VLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHN  275 (420)
T ss_dssp             EEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEE
T ss_pred             EEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEE
Confidence            9999999999999999999888886532 12                     3444556689999999999999999999


Q ss_pred             ccCCeeEEEEecceeeeeeeEEEECCCCc-EEEEeeCCCCeEEEEEcCCcce-eEEeecCCCCCcEEEEeCCCCcEEEEe
Q 040370          138 VSSGRLVKQYLGATHTQLRFQAVFNDTEE-FVLSIDEPSNEIVIWDALTAEK-VAKWSSNHIGAPRWIEHSPAEAAFITC  215 (228)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~i~i~d~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~s~  215 (228)
                      +++++.+..+.. .+...+.++.|+|++. +++++ +.||.|++||+++++. +..+...|...+.++.+ +++++|+++
T Consensus       276 ~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~g-~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~  352 (420)
T 3vl1_A          276 VFSKEQTIQLPS-KFTCSCNSLTVDGNNANYIYAG-YENGMLAQWDLRSPECPVGEFLINEGTPINNVYF-AAGALFVSS  352 (420)
T ss_dssp             TTTCCEEEEECC-TTSSCEEEEEECSSCTTEEEEE-ETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEE-ETTEEEEEE
T ss_pred             CCCCceeEEccc-ccCCCceeEEEeCCCCCEEEEE-eCCCeEEEEEcCCCcCchhhhhccCCCCceEEEe-CCCCEEEEe
Confidence            999887777643 2567889999999999 66655 4589999999998765 55554457778888865 578899999


Q ss_pred             cCCCCEEEeeec
Q 040370          216 GTDRSVRFWKEI  227 (228)
Q Consensus       216 ~~dg~i~vwd~~  227 (228)
                      +.||.|++|++.
T Consensus       353 ~~d~~v~iw~~~  364 (420)
T 3vl1_A          353 GFDTSIKLDIIS  364 (420)
T ss_dssp             TTTEEEEEEEEC
T ss_pred             cCCccEEEEecc
Confidence            999999999964

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=2.5e-36  Score=222.64  Aligned_cols=210  Identities=19%  Similarity=0.281  Sum_probs=173.1

Q ss_pred             EEEeecCcceEEEEEeCC-CCEEEEecCCCeEEEEEcccceEEe--eeccceeeeccceeeEEeCCCCCeEEEEecCCeE
Q 040370           13 FRVIQDTHNVRSVSFHPS-GDFLLAGTDHPIAHLYDVNTFQCYL--SANVPEISVNGAINQVRYSSTGGMYVTASKDGAI   89 (228)
Q Consensus        13 ~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~vw~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v   89 (228)
                      .++.+|.+.|++++|+|+ +++|++|+.|++|+|||+.+.+...  ......+| ...|.+++|+|++++|++++.|+.|
T Consensus        32 ~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h-~~~V~~~~~s~dg~~l~s~~~d~~i  110 (340)
T 4aow_A           32 GTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGH-SHFVSDVVISSDGQFALSGSWDGTL  110 (340)
T ss_dssp             EEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCC-SSCEEEEEECTTSSEEEEEETTSEE
T ss_pred             EEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCC-CCCEEEEEECCCCCEEEEEcccccc
Confidence            346689999999999997 6899999999999999998754221  11122233 8899999999999999999999999


Q ss_pred             EEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCc-EE
Q 040370           90 RLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEE-FV  168 (228)
Q Consensus        90 ~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  168 (228)
                      ++|+............+  ...+....+++++++|++++.|+.+++||+....... .....+...+..+.+++++. .+
T Consensus       111 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~  187 (340)
T 4aow_A          111 RLWDLTTGTTTRRFVGH--TKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYT-VQDESHSEWVSCVRFSPNSSNPI  187 (340)
T ss_dssp             EEEETTTTEEEEEEECC--SSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEE-ECSSSCSSCEEEEEECSCSSSCE
T ss_pred             eEEeecccceeeeecCC--CCceeEEEEeecCccceeecCCCeEEEEEeCCCceEE-EEeccccCcccceEEccCCCCcE
Confidence            99999988877777665  5678888999999999999999999999997655433 22333667777888887653 34


Q ss_pred             EEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370          169 LSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEI  227 (228)
Q Consensus       169 ~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~  227 (228)
                      +++++.|+.|++||+++++....+ .+|.++|++++|+|++++|++|+.||.|++||+.
T Consensus       188 ~~s~~~d~~i~i~d~~~~~~~~~~-~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~  245 (340)
T 4aow_A          188 IVSCGWDKLVKVWNLANCKLKTNH-IGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLN  245 (340)
T ss_dssp             EEEEETTSCEEEEETTTTEEEEEE-CCCSSCEEEEEECTTSSEEEEEETTCEEEEEETT
T ss_pred             EEEEcCCCEEEEEECCCCceeeEe-cCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEec
Confidence            444555899999999999988887 7899999999999999999999999999999964

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=1.2e-35  Score=218.93  Aligned_cols=220  Identities=18%  Similarity=0.269  Sum_probs=177.3

Q ss_pred             CCcCCcccc---ceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeecc------------------
Q 040370            1 FFDFSKATA---KRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANV------------------   59 (228)
Q Consensus         1 iwd~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~------------------   59 (228)
                      |||+.....   .....+.+|...|.+++|+|++++|++|+.|+.|++|+............                  
T Consensus        65 vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  144 (340)
T 4aow_A           65 MWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIV  144 (340)
T ss_dssp             EEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEE
T ss_pred             EEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeecccceeeeecCCCCceeEEEEeecCccce
Confidence            588775443   23445568999999999999999999999999999999866543221110                  


Q ss_pred             ---------------------ceeeeccceeeEEeCCCC--CeEEEEecCCeEEEEeCCCCceeeEEecccccceeEEEE
Q 040370           60 ---------------------PEISVNGAINQVRYSSTG--GMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSAN  116 (228)
Q Consensus        60 ---------------------~~~~~~~~i~~~~~~~~~--~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~  116 (228)
                                           ....|...+.+++|++++  .++++++.|+.|++||+++++....+..+  ...|.+++
T Consensus       145 s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h--~~~v~~~~  222 (340)
T 4aow_A          145 SGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGH--TGYLNTVT  222 (340)
T ss_dssp             EEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCC--SSCEEEEE
T ss_pred             eecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCC--CCcEEEEE
Confidence                                 001125678888888754  47889999999999999999888888776  77899999


Q ss_pred             ECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEee---
Q 040370          117 FTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWS---  193 (228)
Q Consensus       117 ~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~---  193 (228)
                      |+|++++|++|+.|+.|++||+++.+.+..+..   ...+..+.++|++.++++ +. |+.|++||++++.....+.   
T Consensus       223 ~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~---~~~v~~~~~~~~~~~~~~-~~-d~~i~iwd~~~~~~~~~~~~~~  297 (340)
T 4aow_A          223 VSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDG---GDIINALCFSPNRYWLCA-AT-GPSIKIWDLEGKIIVDELKQEV  297 (340)
T ss_dssp             ECTTSSEEEEEETTCEEEEEETTTTEEEEEEEC---SSCEEEEEECSSSSEEEE-EE-TTEEEEEETTTTEEEEEECCC-
T ss_pred             ECCCCCEEEEEeCCCeEEEEEeccCceeeeecC---CceEEeeecCCCCceeec-cC-CCEEEEEECCCCeEEEeccccc
Confidence            999999999999999999999999998888764   456788899998766544 44 7999999999877665542   


Q ss_pred             -----cCCCCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370          194 -----SNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEI  227 (228)
Q Consensus       194 -----~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~  227 (228)
                           .+|...|++++|+|++++|++|+.||.|+|||+.
T Consensus       298 ~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~  336 (340)
T 4aow_A          298 ISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVT  336 (340)
T ss_dssp             ------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEE
T ss_pred             eeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCC
Confidence                 3688999999999999999999999999999975

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=2.5e-38  Score=236.68  Aligned_cols=218  Identities=11%  Similarity=0.068  Sum_probs=167.4

Q ss_pred             CCcCCccccceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeE
Q 040370            1 FFDFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMY   80 (228)
Q Consensus         1 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l   80 (228)
                      |||+.....+....+.+|...|.+++|+|++++|++++.|+.|++||+.+++..........| ...|.+++|+|++++|
T Consensus        37 iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l  115 (377)
T 3dwl_C           37 LYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRL-NRAATFVRWSPNEDKF  115 (377)
T ss_dssp             EEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------CCCCEEECCCC-SSCEEEEECCTTSSCC
T ss_pred             EEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEeccc-CCceEEEEECCCCCEE
Confidence            466664432445555689999999999999999999999999999999987611111112223 7899999999999999


Q ss_pred             EEEecCCeEEEEeCCCCce---eeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccC-----------------
Q 040370           81 VTASKDGAIRLWDGVSANC---VRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSS-----------------  140 (228)
Q Consensus        81 ~~~~~dg~v~iwd~~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~-----------------  140 (228)
                      ++++.|+.|++||+++++.   ...+...+ ...|.+++|+|++++|++++.|+.|++||++.                 
T Consensus       116 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~  194 (377)
T 3dwl_C          116 AVGSGARVISVCYFEQENDWWVSKHLKRPL-RSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLP  194 (377)
T ss_dssp             EEEESSSCEEECCC-----CCCCEEECSSC-CSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCC
T ss_pred             EEEecCCeEEEEEECCcccceeeeEeeccc-CCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccc
Confidence            9999999999999998873   56666522 78999999999999999999999999999952                 


Q ss_pred             -CeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcce----eEEeecCCCCCcEEEEeCCCCcEEEEe
Q 040370          141 -GRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEK----VAKWSSNHIGAPRWIEHSPAEAAFITC  215 (228)
Q Consensus       141 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~s~  215 (228)
                       ++.+..+   .+...+.++.|+|++.++++++. |+.|++||+++++.    +..+ .+|..+|.+++|+|++++|+++
T Consensus       195 ~~~~~~~~---~~~~~v~~~~~sp~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~  269 (377)
T 3dwl_C          195 FNTVCAEY---PSGGWVHAVGFSPSGNALAYAGH-DSSVTIAYPSAPEQPPRALITV-KLSQLPLRSLLWANESAIVAAG  269 (377)
T ss_dssp             EEEEEECC---CCSSSEEEEEECTTSSCEEEEET-TTEEC-CEECSTTSCEEECCCE-ECSSSCEEEEEEEETTEEEEEE
T ss_pred             hhhhhhcc---cCCceEEEEEECCCCCEEEEEeC-CCcEEEEECCCCCCcceeeEee-cCCCCceEEEEEcCCCCEEEEE
Confidence             3344444   37778999999999999888766 89999999999887    5555 6899999999999999999999


Q ss_pred             cCCCCEEEeee
Q 040370          216 GTDRSVRFWKE  226 (228)
Q Consensus       216 ~~dg~i~vwd~  226 (228)
                      +.|+.+ +|+.
T Consensus       270 ~~~~~~-~~~~  279 (377)
T 3dwl_C          270 YNYSPI-LLQG  279 (377)
T ss_dssp             SSSSEE-EECC
T ss_pred             cCCcEE-EEEe
Confidence            877655 6654

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=1.2e-36  Score=231.39  Aligned_cols=213  Identities=17%  Similarity=0.327  Sum_probs=175.7

Q ss_pred             cceeEEEeecCcceEEEEEeCCCC-EEEEecCCCeEEEEEcccceE----EeeeccceeeeccceeeEEeCC-CCCeEEE
Q 040370            9 AKRAFRVIQDTHNVRSVSFHPSGD-FLLAGTDHPIAHLYDVNTFQC----YLSANVPEISVNGAINQVRYSS-TGGMYVT   82 (228)
Q Consensus         9 ~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~vw~~~~~~~----~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~   82 (228)
                      ......+.+|...|.+++|+|++. +|++|+.||.|++|++..+..    ........ .|...|.+++|+| ++.+|++
T Consensus       171 ~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~-~h~~~v~~v~~~p~~~~~l~s  249 (430)
T 2xyi_A          171 CQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFT-GHTAVVEDVAWHLLHESLFGS  249 (430)
T ss_dssp             CCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEEC-CCSSCEEEEEECSSCTTEEEE
T ss_pred             CCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeec-CCCCCEeeeEEeCCCCCEEEE
Confidence            456677778999999999999988 999999999999999987321    11112222 2378899999999 6789999


Q ss_pred             EecCCeEEEEeCCCC---ceeeEEecccccceeEEEEECCCCC-EEEEeeCCCeEEEEEccC-CeeEEEEecceeeeeee
Q 040370           83 ASKDGAIRLWDGVSA---NCVRSIVGAHGTAEATSANFTKDQR-FVLSCGKDSTVKLWEVSS-GRLVKQYLGATHTQLRF  157 (228)
Q Consensus        83 ~~~dg~v~iwd~~~~---~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~~wd~~~-~~~~~~~~~~~~~~~~~  157 (228)
                      ++.||.|++||++++   +....+..+  ...|++++|+|++. ++++|+.||.|++||+++ .+.+..+..  |...+.
T Consensus       250 ~~~dg~i~i~d~~~~~~~~~~~~~~~~--~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~--h~~~v~  325 (430)
T 2xyi_A          250 VADDQKLMIWDTRNNNTSKPSHTVDAH--TAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFES--HKDEIF  325 (430)
T ss_dssp             EETTSEEEEEETTCSCSSSCSEEEECC--SSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEC--CSSCEE
T ss_pred             EeCCCeEEEEECCCCCCCcceeEeecC--CCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeec--CCCCEE
Confidence            999999999999987   456666554  77899999999887 688999999999999998 455666665  677899


Q ss_pred             EEEECCCCcEEEEeeCCCCeEEEEEcCCc--------------ceeEEeecCCCCCcEEEEeCCCCc-EEEEecCCCCEE
Q 040370          158 QAVFNDTEEFVLSIDEPSNEIVIWDALTA--------------EKVAKWSSNHIGAPRWIEHSPAEA-AFITCGTDRSVR  222 (228)
Q Consensus       158 ~~~~~~~~~~~~~~~~~d~~i~i~d~~~~--------------~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~dg~i~  222 (228)
                      ++.|+|++..++++++.|+.|++||++..              +.+... .+|...|.+++|+|+++ +|++++.||.|+
T Consensus       326 ~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~  404 (430)
T 2xyi_A          326 QVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIH-GGHTAKISDFSWNPNEPWIICSVSEDNIMQ  404 (430)
T ss_dssp             EEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEEC-CCCSSCEEEEEECSSSTTEEEEEETTSEEE
T ss_pred             EEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEc-CCCCCCceEEEECCCCCCEEEEEECCCCEE
Confidence            99999999876666666899999999872              344444 68999999999999998 999999999999


Q ss_pred             Eeeec
Q 040370          223 FWKEI  227 (228)
Q Consensus       223 vwd~~  227 (228)
                      +|++.
T Consensus       405 iw~~~  409 (430)
T 2xyi_A          405 VWQMA  409 (430)
T ss_dssp             EEEEC
T ss_pred             EeEcc
Confidence            99974

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=9.8e-37  Score=232.25  Aligned_cols=216  Identities=12%  Similarity=0.200  Sum_probs=176.1

Q ss_pred             cceeEEE-eecCcceEEEEEeC-CCCEEEEecCCCeEEEEEccc---ceEEeeeccceeeeccceeeEEeCCCCCeEEEE
Q 040370            9 AKRAFRV-IQDTHNVRSVSFHP-SGDFLLAGTDHPIAHLYDVNT---FQCYLSANVPEISVNGAINQVRYSSTGGMYVTA   83 (228)
Q Consensus         9 ~~~~~~~-~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~vw~~~~---~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~   83 (228)
                      .+....+ .+|...|++++|+| ++++|++|+.||.|++||+.+   +....  ......|...|.+++|+|++++|++|
T Consensus        52 g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~--~~~~~~h~~~v~~~~~~~~~~~l~s~  129 (437)
T 3gre_A           52 GKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYS--SSLTYDCSSTVTQITMIPNFDAFAVS  129 (437)
T ss_dssp             CCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCS--CSEEEECSSCEEEEEECTTSSEEEEE
T ss_pred             ceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccc--eeeeccCCCCEEEEEEeCCCCEEEEE
Confidence            3445566 57899999999999 999999999999999999987   43111  11122348899999999999999999


Q ss_pred             ecCCeEEEEeCC---CCceeeEEecc--------c--ccceeEEEE--ECCCCCEEEEeeCCCeEEEEEccCCeeEEEEe
Q 040370           84 SKDGAIRLWDGV---SANCVRSIVGA--------H--GTAEATSAN--FTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYL  148 (228)
Q Consensus        84 ~~dg~v~iwd~~---~~~~~~~~~~~--------~--~~~~i~~~~--~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~  148 (228)
                      +.||.|++||++   +++.......+        .  +...+.++.  +++++.++++++.|+.|++||+++++.+..+.
T Consensus       130 s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~  209 (437)
T 3gre_A          130 SKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIE  209 (437)
T ss_dssp             ETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             eCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEc
Confidence            999999999995   55444433221        1  244566666  56789999999999999999999999999988


Q ss_pred             cceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeC----CCCcEEEEecCCCCEEEe
Q 040370          149 GATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHS----PAEAAFITCGTDRSVRFW  224 (228)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~l~s~~~dg~i~vw  224 (228)
                      .+.|...+.+++|+|++.++++++. ||.|++||+++++.+..+...|..+|.+++|+    |++.+|++++.||.|++|
T Consensus       210 ~~~h~~~v~~~~~s~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iw  288 (437)
T 3gre_A          210 NSPRHGAVSSICIDEECCVLILGTT-RGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIW  288 (437)
T ss_dssp             CCGGGCCEEEEEECTTSCEEEEEET-TSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEE
T ss_pred             cCCCCCceEEEEECCCCCEEEEEcC-CCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEE
Confidence            7556778999999999999888666 79999999999998888755788899999555    568899999999999999


Q ss_pred             eec
Q 040370          225 KEI  227 (228)
Q Consensus       225 d~~  227 (228)
                      |+.
T Consensus       289 d~~  291 (437)
T 3gre_A          289 NFV  291 (437)
T ss_dssp             ETT
T ss_pred             EcC
Confidence            974

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=1.2e-37  Score=231.59  Aligned_cols=218  Identities=13%  Similarity=0.201  Sum_probs=176.9

Q ss_pred             CCcCCccccceeEEEeecCcceEEEEEeC-CCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCe
Q 040370            1 FFDFSKATAKRAFRVIQDTHNVRSVSFHP-SGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGM   79 (228)
Q Consensus         1 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~   79 (228)
                      |||+...  +....+.+|..+|.+++|+| ++++|++|+.||.|++||+.+++....+.....| ...|.+++|+|++++
T Consensus        99 v~d~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~  175 (366)
T 3k26_A           99 IINPITM--QCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGH-RDEVLSADYDLLGEK  175 (366)
T ss_dssp             EECTTTC--CEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSC-SSCEEEEEECTTSSE
T ss_pred             EEEchhc--eEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccc-cCceeEEEECCCCCE
Confidence            4777644  33445557999999999999 9999999999999999999998877766432333 889999999999999


Q ss_pred             EEEEecCCeEEEEeCCCCceeeEEec--------------------------ccccceeEEEEECCCCCEEEEeeCCCeE
Q 040370           80 YVTASKDGAIRLWDGVSANCVRSIVG--------------------------AHGTAEATSANFTKDQRFVLSCGKDSTV  133 (228)
Q Consensus        80 l~~~~~dg~v~iwd~~~~~~~~~~~~--------------------------~~~~~~i~~~~~~~~~~~l~~~~~d~~i  133 (228)
                      |++++.||.|++||+++++....+..                          ..+...|.+++|+  ++++++++.|+.|
T Consensus       176 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i  253 (366)
T 3k26_A          176 IMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCENAI  253 (366)
T ss_dssp             EEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECSSSEE
T ss_pred             EEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEecCCEE
Confidence            99999999999999988765433321                          0137789999998  7799999999999


Q ss_pred             EEEEccCCee--------------EEEEecceeeeeeeEEEECCC--CcEEEEeeCCCCeEEEEEcCCccee----EEee
Q 040370          134 KLWEVSSGRL--------------VKQYLGATHTQLRFQAVFNDT--EEFVLSIDEPSNEIVIWDALTAEKV----AKWS  193 (228)
Q Consensus       134 ~~wd~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~d~~i~i~d~~~~~~~----~~~~  193 (228)
                      ++||+++++.              +..+..  +...+..+.|+|+  +.++++++. ||.|++||+++++..    ..+ 
T Consensus       254 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~s~~~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~~~-  329 (366)
T 3k26_A          254 VCWKPGKMEDDIDKIKPSESNVTILGRFDY--SQCDIWYMRFSMDFWQKMLALGNQ-VGKLYVWDLEVEDPHKAKCTTL-  329 (366)
T ss_dssp             EEEEESSTTCCGGGCCTTCCCEEEEEEEEC--SSCCSSCCCCEECTTSSEEEEECT-TSCEEEEECCSSSGGGCEEEEE-
T ss_pred             EEEeCCCccccccccccCCcchheeccccc--cCCcEEEEEEcCCCCCcEEEEEec-CCcEEEEECCCCCCccccceEE-
Confidence            9999987643              445544  5566778888888  888887655 899999999987643    244 


Q ss_pred             cCC--CCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370          194 SNH--IGAPRWIEHSPAEAAFITCGTDRSVRFWKEI  227 (228)
Q Consensus       194 ~~~--~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~  227 (228)
                      ..|  ...|.+++|+|++++|++++.||.|++||+.
T Consensus       330 ~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~  365 (366)
T 3k26_A          330 THHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL  365 (366)
T ss_dssp             CCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred             cccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence            455  7899999999999999999999999999974

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=5.5e-36  Score=235.30  Aligned_cols=209  Identities=20%  Similarity=0.439  Sum_probs=179.0

Q ss_pred             CCcCCccccceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeE
Q 040370            1 FFDFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMY   80 (228)
Q Consensus         1 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l   80 (228)
                      +||.+   ..+...+.+|...|.+++|+|++++|++|+.|+.|++|+.. ++....+.   .| ...|.+++|+|++++|
T Consensus       329 ~w~~~---~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~-~~~~~~~~---~~-~~~v~~~~~s~dg~~l  400 (577)
T 2ymu_A          329 LWNRN---GQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTLT---GH-SSSVRGVAFSPDGQTI  400 (577)
T ss_dssp             EEETT---SCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT-CCEEEEEE---CC-SSCEEEEEECTTSSCE
T ss_pred             EEeCC---CCeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCC-CCEEEEec---CC-CCCeEEEEECCCCCEE
Confidence            35554   33455667899999999999999999999999999999964 44444333   23 7889999999999999


Q ss_pred             EEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEE
Q 040370           81 VTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAV  160 (228)
Q Consensus        81 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~  160 (228)
                      ++++.|+.|++||. +++.+..+..+  ...|.+++|+|++++|++++.|+.|++||. +++.+..+..  +...+.+++
T Consensus       401 ~~~~~d~~v~~~~~-~~~~~~~~~~~--~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~--~~~~v~~~~  474 (577)
T 2ymu_A          401 ASASDDKTVKLWNR-NGQLLQTLTGH--SSSVWGVAFSPDDQTIASASDDKTVKLWNR-NGQLLQTLTG--HSSSVRGVA  474 (577)
T ss_dssp             EEEETTSEEEEECT-TCCEEEEEECC--SSCEEEEEECTTSSEEEEEETTSEEEEEET-TSCEEEEEEC--CSSCEEEEE
T ss_pred             EEEeCCCEEEEEeC-CCCEEEEecCC--CCCeEEEEECCCCCEEEEEcCCCEEEEEEC-CCCEEEEEcC--CCCCEEEEE
Confidence            99999999999995 56777777766  778999999999999999999999999996 5677777766  667889999


Q ss_pred             ECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeee
Q 040370          161 FNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKE  226 (228)
Q Consensus       161 ~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~  226 (228)
                      |+|+++++++++. |+.|++||. +++.+..+ .+|...|++++|+|++++|++++.||.|++||.
T Consensus       475 ~spd~~~las~~~-d~~i~iw~~-~~~~~~~~-~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~  537 (577)
T 2ymu_A          475 FSPDGQTIASASD-DKTVKLWNR-NGQLLQTL-TGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR  537 (577)
T ss_dssp             ECTTSCEEEEEET-TSEEEEEET-TSCEEEEE-ECCSSCEEEEEECTTSSCEEEEETTSEEEEECT
T ss_pred             EcCCCCEEEEEeC-CCEEEEEcC-CCCEEEEE-eCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeC
Confidence            9999999988766 899999994 67777777 789999999999999999999999999999984

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=9.1e-38  Score=233.62  Aligned_cols=201  Identities=11%  Similarity=0.067  Sum_probs=160.6

Q ss_pred             ecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccce--EEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeC
Q 040370           17 QDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQ--CYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDG   94 (228)
Q Consensus        17 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~--~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~   94 (228)
                      .+..+|++++|+|++++|++|+.|+.|++||+.++.  ....+.   .| ...|.+++|+|++++|++++.||.|++||+
T Consensus         9 ~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~---~h-~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~   84 (377)
T 3dwl_C            9 ILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFS---DH-DKIVTCVDWAPKSNRIVTCSQDRNAYVYEK   84 (377)
T ss_dssp             ECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBC---CC-SSCEEEEEECTTTCCEEEEETTSSEEEC--
T ss_pred             cCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEe---cC-CceEEEEEEeCCCCEEEEEeCCCeEEEEEc
Confidence            367899999999999999999999999999999873  333332   33 889999999999999999999999999999


Q ss_pred             CCCc---eeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCee---EEEEecceeeeeeeEEEECCCCcEE
Q 040370           95 VSAN---CVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRL---VKQYLGATHTQLRFQAVFNDTEEFV  168 (228)
Q Consensus        95 ~~~~---~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~  168 (228)
                      ++++   ....+..+  ...|.+++|+|++++|++++.|+.|++||+++++.   ...+.. .|...+.++.|+|++.++
T Consensus        85 ~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l  161 (377)
T 3dwl_C           85 RPDGTWKQTLVLLRL--NRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKR-PLRSTILSLDWHPNNVLL  161 (377)
T ss_dssp             ----CCCCEEECCCC--SSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECS-SCCSCEEEEEECTTSSEE
T ss_pred             CCCCceeeeeEeccc--CCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeec-ccCCCeEEEEEcCCCCEE
Confidence            9877   44444443  78999999999999999999999999999998763   455543 267789999999999988


Q ss_pred             EEeeCCCCeEEEEEcCC------------------cceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370          169 LSIDEPSNEIVIWDALT------------------AEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEI  227 (228)
Q Consensus       169 ~~~~~~d~~i~i~d~~~------------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~  227 (228)
                      ++++. |+.|++||++.                  ++....+  +|...|.+++|+|++++|++++.||.|++||+.
T Consensus       162 ~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~  235 (377)
T 3dwl_C          162 AAGCA-DRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY--PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPS  235 (377)
T ss_dssp             EEEES-SSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC--CCSSSEEEEEECTTSSCEEEEETTTEEC-CEEC
T ss_pred             EEEeC-CCEEEEEEEEecccCCCccccccccccchhhhhhcc--cCCceEEEEEECCCCCEEEEEeCCCcEEEEECC
Confidence            88766 79999999852                  3344444  899999999999999999999999999999974

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.3e-35  Score=219.50  Aligned_cols=219  Identities=20%  Similarity=0.283  Sum_probs=183.8

Q ss_pred             CCcCCccccceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccce-------------------
Q 040370            1 FFDFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPE-------------------   61 (228)
Q Consensus         1 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~-------------------   61 (228)
                      |||+...  +....+.+|...|.+++|+|++++|++++.||.|++||+.+++.........                   
T Consensus        58 vwd~~~~--~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  135 (369)
T 3zwl_B           58 VWYSLNG--ERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWKSPVPVKRVEFSPCGNYFLAILD  135 (369)
T ss_dssp             EEETTTC--CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSSEEEEEEC
T ss_pred             EEeCCCc--hhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCeEEEEEccCCCEEEEecC
Confidence            4776643  4455566799999999999999999999999999999998876544332100                   


Q ss_pred             ----------------------------------eeecc--ceeeEEeCCCCCeEEEEecCCeEEEEeCCC-CceeeEEe
Q 040370           62 ----------------------------------ISVNG--AINQVRYSSTGGMYVTASKDGAIRLWDGVS-ANCVRSIV  104 (228)
Q Consensus        62 ----------------------------------~~~~~--~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~-~~~~~~~~  104 (228)
                                                        ..+..  .+.+++|+|+++++++++.||.|++||+++ ++....+.
T Consensus       136 ~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  215 (369)
T 3zwl_B          136 NVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSID  215 (369)
T ss_dssp             CBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEE
T ss_pred             CccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEe
Confidence                                              00011  788888999999999999999999999998 66777776


Q ss_pred             cccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCC--------
Q 040370          105 GAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSN--------  176 (228)
Q Consensus       105 ~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~--------  176 (228)
                      .+  ...|.+++|+|++++|++++.|+.|++||+++++.+..+.   +...+..+.++|++.++++++..++        
T Consensus       216 ~~--~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  290 (369)
T 3zwl_B          216 LH--EKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE---TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSA  290 (369)
T ss_dssp             CC--SSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE---CSSCEEEEEECSSSSEEEEEECCC---------
T ss_pred             cC--CCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeec---CCCCceeEEecCCCceEEEeecCCCceEEEEec
Confidence            65  7789999999999999999999999999999998888876   4567889999999999999877422        


Q ss_pred             -----eEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370          177 -----EIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEI  227 (228)
Q Consensus       177 -----~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~  227 (228)
                           .+++||..+++....+ .+|...|.+++|+|++++|++++.||.|++|++.
T Consensus       291 ~~~~~~i~~~d~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~  345 (369)
T 3zwl_B          291 NEGKFEARFYHKIFEEEIGRV-QGHFGPLNTVAISPQGTSYASGGEDGFIRLHHFE  345 (369)
T ss_dssp             ----CEEEEEETTTCCEEEEE-ECCSSCEEEEEECTTSSEEEEEETTSEEEEEEEC
T ss_pred             CCCcceeEEEecCCCcchhhe-ecccCcEEEEEECCCCCEEEEEcCCCeEEEEECc
Confidence                 8999999999998888 7899999999999999999999999999999974

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=6.9e-37  Score=226.93  Aligned_cols=222  Identities=9%  Similarity=0.126  Sum_probs=176.9

Q ss_pred             CCcCCccccceeEEEeecCcceEEEEE------eCCCCEEEEecCCCeEEEEEcccce-EEeeeccceeeeccceeeEE-
Q 040370            1 FFDFSKATAKRAFRVIQDTHNVRSVSF------HPSGDFLLAGTDHPIAHLYDVNTFQ-CYLSANVPEISVNGAINQVR-   72 (228)
Q Consensus         1 iwd~~~~~~~~~~~~~~~~~~v~~~~~------~~~~~~l~~~~~d~~i~vw~~~~~~-~~~~~~~~~~~~~~~i~~~~-   72 (228)
                      +||+.... .....+.+|...|.+++|      +|++++|++++.|+.|++||+.+++ ..........+....+.+++ 
T Consensus        94 iwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~  172 (357)
T 3i2n_A           94 IWNLEAPE-MPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAF  172 (357)
T ss_dssp             EECTTSCS-SCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEE
T ss_pred             EEeCCCCC-ccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEE
Confidence            47777543 245556689999999955      6789999999999999999999876 44544443333345788888 


Q ss_pred             ---eCCCCCeEEEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECC---CCCEEEEeeCCCeEEEEEccCCeeEEE
Q 040370           73 ---YSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTK---DQRFVLSCGKDSTVKLWEVSSGRLVKQ  146 (228)
Q Consensus        73 ---~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~---~~~~l~~~~~d~~i~~wd~~~~~~~~~  146 (228)
                         |+|+++++++++.||.|++||+++++..... .+  ...+.+++|+|   +++++++++.|+.|++||+++++....
T Consensus       173 ~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~-~~--~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~  249 (357)
T 3i2n_A          173 GNAYNQEERVVCAGYDNGDIKLFDLRNMALRWET-NI--KNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKG  249 (357)
T ss_dssp             ECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEE-EC--SSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTE
T ss_pred             EeccCCCCCEEEEEccCCeEEEEECccCceeeec-CC--CCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccc
Confidence               7899999999999999999999998875443 22  67899999999   999999999999999999998766544


Q ss_pred             Ee---cceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcc-------------------eeEEeecCCCCCcEEEE
Q 040370          147 YL---GATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAE-------------------KVAKWSSNHIGAPRWIE  204 (228)
Q Consensus       147 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~-------------------~~~~~~~~~~~~v~~~~  204 (228)
                      +.   ...+...+..+.|+|++..++++++.||.|++||++++.                   .+..+ .+|...|.+++
T Consensus       250 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~v~~~~  328 (357)
T 3i2n_A          250 FASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNV-TLSTQPISSLD  328 (357)
T ss_dssp             EEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEE-ECCSSCEEEEE
T ss_pred             eeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeecc-ccCCCCeeEEE
Confidence            43   113677899999999999555555668999999998653                   33344 68999999999


Q ss_pred             eCCCCcEEE-EecCCCCEEEeeec
Q 040370          205 HSPAEAAFI-TCGTDRSVRFWKEI  227 (228)
Q Consensus       205 ~~~~~~~l~-s~~~dg~i~vwd~~  227 (228)
                      |+|++++|+ +++.||.|++||+.
T Consensus       329 ~s~~~~~l~~s~~~d~~i~iw~~~  352 (357)
T 3i2n_A          329 WSPDKRGLCVCSSFDQTVRVLIVT  352 (357)
T ss_dssp             ECSSSTTEEEEEETTSEEEEEEEC
T ss_pred             EcCCCCeEEEEecCCCcEEEEECC
Confidence            999999998 89999999999974

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.4e-36  Score=226.75  Aligned_cols=212  Identities=16%  Similarity=0.219  Sum_probs=183.7

Q ss_pred             cceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccce---------------------------
Q 040370            9 AKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPE---------------------------   61 (228)
Q Consensus         9 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~---------------------------   61 (228)
                      ......+..|...|.+++|+|++++|++++.|+.|++||+.+++....+....                           
T Consensus       139 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (425)
T 1r5m_A          139 GALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDD  218 (425)
T ss_dssp             SCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEETT
T ss_pred             CCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCC
Confidence            34555666799999999999999999999999999999998877654332211                           


Q ss_pred             -------------------------eeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCCCceeeEEecccccceeEEEE
Q 040370           62 -------------------------ISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSAN  116 (228)
Q Consensus        62 -------------------------~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~  116 (228)
                                               ..|...|.+++|+|++++|++++.||.|++||+++++....+..+  ...+.+++
T Consensus       219 ~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~--~~~i~~~~  296 (425)
T 1r5m_A          219 KFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGH--SQSIVSAS  296 (425)
T ss_dssp             EEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCC--SSCEEEEE
T ss_pred             EEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEecCC--CccEEEEE
Confidence                                     123678999999999999999999999999999999888888765  67899999


Q ss_pred             ECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcc---------
Q 040370          117 FTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAE---------  187 (228)
Q Consensus       117 ~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~---------  187 (228)
                      |+|++ ++++++.|+.|++||+++++.+..+..  +...+..+.|+|++.++++++. ||.|++||+++++         
T Consensus       297 ~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~--~~~~i~~~~~s~~~~~l~~~~~-dg~i~i~~~~~~~~~~~~~~~~  372 (425)
T 1r5m_A          297 WVGDD-KVISCSMDGSVRLWSLKQNTLLALSIV--DGVPIFAGRISQDGQKYAVAFM-DGQVNVYDLKKLNSKSRSLYGN  372 (425)
T ss_dssp             EETTT-EEEEEETTSEEEEEETTTTEEEEEEEC--TTCCEEEEEECTTSSEEEEEET-TSCEEEEECHHHHC--------
T ss_pred             ECCCC-EEEEEeCCCcEEEEECCCCcEeEeccc--CCccEEEEEEcCCCCEEEEEEC-CCeEEEEECCCCccceeeeecc
Confidence            99999 999999999999999999998888876  5667889999999999888766 7999999999888         


Q ss_pred             -----------eeEEeecCCCC--CcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370          188 -----------KVAKWSSNHIG--APRWIEHSPAEAAFITCGTDRSVRFWKEI  227 (228)
Q Consensus       188 -----------~~~~~~~~~~~--~v~~~~~~~~~~~l~s~~~dg~i~vwd~~  227 (228)
                                 .+..+ ..|..  .|.+++|+|++++|++++.||.|++||+.
T Consensus       373 ~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~  424 (425)
T 1r5m_A          373 RDGILNPLPIPLYASY-QSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAIP  424 (425)
T ss_dssp             ------CEECCEEEEE-CCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEECC
T ss_pred             cccccCcccchhhhhh-cCcccCCceEEEEccCCCceEEEEecCceEEEEeec
Confidence                       66666 67765  99999999999999999999999999974

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=6.4e-36  Score=225.52  Aligned_cols=214  Identities=16%  Similarity=0.257  Sum_probs=181.6

Q ss_pred             CCcCCccccceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeE
Q 040370            1 FFDFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMY   80 (228)
Q Consensus         1 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l   80 (228)
                      |||+.......... ..|...|.+++|+|++++|++|+.||.|++||+.+++....+..   | ...|.+++|  +++.+
T Consensus       117 lw~~~~~~~~~~~~-~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---~-~~~v~~~~~--~~~~l  189 (401)
T 4aez_A          117 VWNADSGSVSALAE-TDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAG---H-QARVGCLSW--NRHVL  189 (401)
T ss_dssp             EEETTTCCEEEEEE-CCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECC---C-SSCEEEEEE--ETTEE
T ss_pred             EeeCCCCcEeEeee-cCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecC---C-CCceEEEEE--CCCEE
Confidence            47776554433322 24789999999999999999999999999999999887766552   2 789999999  46799


Q ss_pred             EEEecCCeEEEEeCCC-CceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEE
Q 040370           81 VTASKDGAIRLWDGVS-ANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQA  159 (228)
Q Consensus        81 ~~~~~dg~v~iwd~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~  159 (228)
                      ++|+.||.|++||++. ......+..+  ...|.+++|+|++++|++++.|+.|++||+++++....+..  +...+.++
T Consensus       190 ~~~~~dg~i~i~d~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~--~~~~v~~~  265 (401)
T 4aez_A          190 SSGSRSGAIHHHDVRIANHQIGTLQGH--SSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTN--HNAAVKAV  265 (401)
T ss_dssp             EEEETTSEEEEEETTSSSCEEEEEECC--SSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECC--CSSCCCEE
T ss_pred             EEEcCCCCEEEEecccCcceeeEEcCC--CCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecC--CcceEEEE
Confidence            9999999999999994 5556666665  77999999999999999999999999999999888887765  67788999


Q ss_pred             EECCCCcEEEEeeC--CCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEE--ecCCCCEEEeeec
Q 040370          160 VFNDTEEFVLSIDE--PSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFIT--CGTDRSVRFWKEI  227 (228)
Q Consensus       160 ~~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s--~~~dg~i~vwd~~  227 (228)
                      .|+|++..++++++  .|+.|++||+++++....+  .+...+.+++|+|++++|++  |+.||.|++||+.
T Consensus       266 ~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~  335 (401)
T 4aez_A          266 AWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTV--DAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYS  335 (401)
T ss_dssp             EECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEE--ECSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEE
T ss_pred             EECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEE--eCCCcEEEEEECCCCCeEEEEeecCCCcEEEEecC
Confidence            99998877777654  6899999999999988887  46778999999999999999  5589999999974

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.5e-37  Score=233.02  Aligned_cols=222  Identities=13%  Similarity=0.262  Sum_probs=184.9

Q ss_pred             CCcCCccc--cceeEEEeecCcceEEEEEeCC-CCEEEEecCCCeEEEEEcccce------EEeeeccceeeeccceeeE
Q 040370            1 FFDFSKAT--AKRAFRVIQDTHNVRSVSFHPS-GDFLLAGTDHPIAHLYDVNTFQ------CYLSANVPEISVNGAINQV   71 (228)
Q Consensus         1 iwd~~~~~--~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~vw~~~~~~------~~~~~~~~~~~~~~~i~~~   71 (228)
                      |||+....  .+....+.+|...|.+++|+|+ +++|++++.|+.|++||+.+++      ..........| ...|.++
T Consensus        93 vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~  171 (416)
T 2pm9_A           93 LYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSS-VDEVISL  171 (416)
T ss_dssp             EECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCS-SCCCCEE
T ss_pred             EeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCC-CCCeeEE
Confidence            47776521  2355566689999999999998 8999999999999999999876      32222222233 7899999


Q ss_pred             EeCCC-CCeEEEEecCCeEEEEeCCCCceeeEEecccc----cceeEEEEECCCC-CEEEEeeCCC---eEEEEEccCC-
Q 040370           72 RYSST-GGMYVTASKDGAIRLWDGVSANCVRSIVGAHG----TAEATSANFTKDQ-RFVLSCGKDS---TVKLWEVSSG-  141 (228)
Q Consensus        72 ~~~~~-~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~----~~~i~~~~~~~~~-~~l~~~~~d~---~i~~wd~~~~-  141 (228)
                      +|+|+ +.++++++.||.|++||+++++.+..+..+..    ...+.+++|+|++ .++++++.|+   .|++||++++ 
T Consensus       172 ~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~  251 (416)
T 2pm9_A          172 AWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNAN  251 (416)
T ss_dssp             EECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTT
T ss_pred             EeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCC
Confidence            99998 78999999999999999999988888776421    5689999999987 6899999998   9999999986 


Q ss_pred             eeEEEEe-cceeeeeeeEEEECC-CCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCC-cEEEEecCC
Q 040370          142 RLVKQYL-GATHTQLRFQAVFND-TEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAE-AAFITCGTD  218 (228)
Q Consensus       142 ~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~d  218 (228)
                      +....+. .  +...+..+.|+| ++.++++++. |+.|++||+++++.+..+ ..|...|.+++|+|++ .+|++++.|
T Consensus       252 ~~~~~~~~~--~~~~v~~~~~s~~~~~~l~s~~~-dg~v~~wd~~~~~~~~~~-~~~~~~v~~~~~s~~~~~~l~s~~~d  327 (416)
T 2pm9_A          252 TPLQTLNQG--HQKGILSLDWCHQDEHLLLSSGR-DNTVLLWNPESAEQLSQF-PARGNWCFKTKFAPEAPDLFACASFD  327 (416)
T ss_dssp             SCSBCCCSC--CSSCEEEEEECSSCSSCEEEEES-SSEEEEECSSSCCEEEEE-ECSSSCCCCEEECTTCTTEEEECCSS
T ss_pred             CCcEEeecC--ccCceeEEEeCCCCCCeEEEEeC-CCCEEEeeCCCCccceee-cCCCCceEEEEECCCCCCEEEEEecC
Confidence            4555554 3  677889999999 7788777665 899999999999998888 6899999999999998 899999999


Q ss_pred             CCEEEeeec
Q 040370          219 RSVRFWKEI  227 (228)
Q Consensus       219 g~i~vwd~~  227 (228)
                      |.|++||+.
T Consensus       328 ~~i~iw~~~  336 (416)
T 2pm9_A          328 NKIEVQTLQ  336 (416)
T ss_dssp             SEEEEEESC
T ss_pred             CcEEEEEcc
Confidence            999999974

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=1.6e-36  Score=228.16  Aligned_cols=223  Identities=12%  Similarity=0.180  Sum_probs=184.4

Q ss_pred             CCcCCccc----cceeEEEeecCcceEEEEEeCC----C---CEEEEecCCCeEEEEEcccceE-----Eeeeccceeee
Q 040370            1 FFDFSKAT----AKRAFRVIQDTHNVRSVSFHPS----G---DFLLAGTDHPIAHLYDVNTFQC-----YLSANVPEISV   64 (228)
Q Consensus         1 iwd~~~~~----~~~~~~~~~~~~~v~~~~~~~~----~---~~l~~~~~d~~i~vw~~~~~~~-----~~~~~~~~~~~   64 (228)
                      |||+....    ......+.+|..+|.+++|+|+    +   ++|++++.|+.|++|++.+++.     ........ .+
T Consensus        40 iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~-~~  118 (397)
T 1sq9_A           40 VWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLD-SD  118 (397)
T ss_dssp             EEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSC-TT
T ss_pred             EEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccc-cc
Confidence            47776554    3356677789999999999999    9   9999999999999999998764     33333221 00


Q ss_pred             --ccceeeEEeC----CCCCe-EEEEecCCeEEEEeCCC------Cceee-----EEec-----ccccceeEEEEECCCC
Q 040370           65 --NGAINQVRYS----STGGM-YVTASKDGAIRLWDGVS------ANCVR-----SIVG-----AHGTAEATSANFTKDQ  121 (228)
Q Consensus        65 --~~~i~~~~~~----~~~~~-l~~~~~dg~v~iwd~~~------~~~~~-----~~~~-----~~~~~~i~~~~~~~~~  121 (228)
                        ...|.+++|+    |++++ |++++.||.|++||+++      ++.+.     .+..     ..+...+.+++|+|++
T Consensus       119 ~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  198 (397)
T 1sq9_A          119 MKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG  198 (397)
T ss_dssp             GGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS
T ss_pred             cCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc
Confidence              3789999999    99999 99999999999999998      66665     6653     3347789999999999


Q ss_pred             CEEEEeeCCCeEEEEEccCCeeEEEEec-cee---eeeeeEEEECCCCcEEEEeeCCC---CeEEEEEcCCcceeEEeec
Q 040370          122 RFVLSCGKDSTVKLWEVSSGRLVKQYLG-ATH---TQLRFQAVFNDTEEFVLSIDEPS---NEIVIWDALTAEKVAKWSS  194 (228)
Q Consensus       122 ~~l~~~~~d~~i~~wd~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~d---~~i~i~d~~~~~~~~~~~~  194 (228)
                       ++++++.|+.|++||+++++.+..+.. ..|   ...+.++.|+|++.++++++. |   +.|++||+++++.+..+ .
T Consensus       199 -~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~-d~~~g~i~i~d~~~~~~~~~~-~  275 (397)
T 1sq9_A          199 -LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHD-SNSFGCITLYETEFGERIGSL-S  275 (397)
T ss_dssp             -EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEE-ETTEEEEEEEETTTCCEEEEE-C
T ss_pred             -eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEec-CCCCceEEEEECCCCccccee-c
Confidence             999999999999999999988888764 113   667899999999999888665 7   99999999999988887 5


Q ss_pred             C-------------CCCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370          195 N-------------HIGAPRWIEHSPAEAAFITCGTDRSVRFWKEI  227 (228)
Q Consensus       195 ~-------------~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~  227 (228)
                      .             |...|.+++|+|++++|++++.||.|++||+.
T Consensus       276 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~  321 (397)
T 1sq9_A          276 VPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVK  321 (397)
T ss_dssp             BC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETT
T ss_pred             cCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcC
Confidence            5             89999999999999999999999999999974

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=1e-35  Score=221.92  Aligned_cols=204  Identities=10%  Similarity=0.058  Sum_probs=174.4

Q ss_pred             ecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccce--EEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeC
Q 040370           17 QDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQ--CYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDG   94 (228)
Q Consensus        17 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~--~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~   94 (228)
                      .|..+|++++|+|++++|++|+.|+.|++||+.+++  ....+.   .| ...|.+++|+|++++|++++.||.|++||+
T Consensus         6 ~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~---~h-~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~   81 (372)
T 1k8k_C            6 FLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELK---EH-NGQVTGVDWAPDSNRIVTCGTDRNAYVWTL   81 (372)
T ss_dssp             SCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEE---CC-SSCEEEEEEETTTTEEEEEETTSCEEEEEE
T ss_pred             ccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeec---CC-CCcccEEEEeCCCCEEEEEcCCCeEEEEEC
Confidence            488999999999999999999999999999999886  444333   23 789999999999999999999999999999


Q ss_pred             CCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCee---EEEEecceeeeeeeEEEECCCCcEEEEe
Q 040370           95 VSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRL---VKQYLGATHTQLRFQAVFNDTEEFVLSI  171 (228)
Q Consensus        95 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (228)
                      ++++.........+...+.+++|+|++++|++++.|+.|++||++.++.   ...+. ..+...+.++.|+|++.+++++
T Consensus        82 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~  160 (372)
T 1k8k_C           82 KGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIK-KPIRSTVLSLDWHPNSVLLAAG  160 (372)
T ss_dssp             ETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEEC-TTCCSCEEEEEECTTSSEEEEE
T ss_pred             CCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeee-cccCCCeeEEEEcCCCCEEEEE
Confidence            9887666655444478999999999999999999999999999998763   22222 2357789999999999988886


Q ss_pred             eCCCCeEEEEEcC------------------CcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370          172 DEPSNEIVIWDAL------------------TAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEI  227 (228)
Q Consensus       172 ~~~d~~i~i~d~~------------------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~  227 (228)
                      +. |+.|++||++                  .++....+ ..|...|.+++|+|++++|++++.||.|++||+.
T Consensus       161 ~~-dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~  232 (372)
T 1k8k_C          161 SC-DFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFES-SSSCGWVHGVCFSANGSRVAWVSHDSTVCLADAD  232 (372)
T ss_dssp             ET-TSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEEC-CCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGG
T ss_pred             cC-CCCEEEEEcccccccccccccccccccchhhheEec-CCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECC
Confidence            66 7999999954                  56666666 6899999999999999999999999999999974

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.4e-37  Score=233.11  Aligned_cols=222  Identities=14%  Similarity=0.279  Sum_probs=179.8

Q ss_pred             CCcCCccccceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEccc----ceEEeeeccceeeeccceeeEEeCCC
Q 040370            1 FFDFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNT----FQCYLSANVPEISVNGAINQVRYSST   76 (228)
Q Consensus         1 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~----~~~~~~~~~~~~~~~~~i~~~~~~~~   76 (228)
                      |||+......+......|...|++++|+|++++|++|+.||.|++|++..    .+....+.   .| ...|.+++|+|+
T Consensus        49 iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~---~h-~~~v~~~~~~~~  124 (416)
T 2pm9_A           49 LWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFS---NH-SSSVKTVKFNAK  124 (416)
T ss_dssp             EEESSSGGGCSCSCCCCCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECC---CS-SSCCCEEEECSS
T ss_pred             EEEccCCCCCcEEEEEecCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhcc---CC-ccceEEEEEcCC
Confidence            47777655434444557899999999999999999999999999999987    23333332   23 789999999998


Q ss_pred             -CCeEEEEecCCeEEEEeCCCCc------eeeEE-ecccccceeEEEEECCC-CCEEEEeeCCCeEEEEEccCCeeEEEE
Q 040370           77 -GGMYVTASKDGAIRLWDGVSAN------CVRSI-VGAHGTAEATSANFTKD-QRFVLSCGKDSTVKLWEVSSGRLVKQY  147 (228)
Q Consensus        77 -~~~l~~~~~dg~v~iwd~~~~~------~~~~~-~~~~~~~~i~~~~~~~~-~~~l~~~~~d~~i~~wd~~~~~~~~~~  147 (228)
                       +++|++++.||.|++||+++++      ....+ ....+...+.+++|+|+ +.++++++.|+.|++||+++++.+..+
T Consensus       125 ~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~  204 (416)
T 2pm9_A          125 QDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHL  204 (416)
T ss_dssp             STTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEE
T ss_pred             CCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEE
Confidence             8999999999999999999876      33222 11123778999999998 789999999999999999999988887


Q ss_pred             eccee----eeeeeEEEECCCCcEEEEeeCCCC---eEEEEEcCCcc-eeEEeec-CCCCCcEEEEeCC-CCcEEEEecC
Q 040370          148 LGATH----TQLRFQAVFNDTEEFVLSIDEPSN---EIVIWDALTAE-KVAKWSS-NHIGAPRWIEHSP-AEAAFITCGT  217 (228)
Q Consensus       148 ~~~~~----~~~~~~~~~~~~~~~~~~~~~~d~---~i~i~d~~~~~-~~~~~~~-~~~~~v~~~~~~~-~~~~l~s~~~  217 (228)
                      ..+..    ...+.++.|+|++..++++++.|+   .|++||++++. ....+ . +|...|.+++|+| ++++|++++.
T Consensus       205 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~-~~~~~~~v~~~~~s~~~~~~l~s~~~  283 (416)
T 2pm9_A          205 SYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTL-NQGHQKGILSLDWCHQDEHLLLSSGR  283 (416)
T ss_dssp             CCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCC-CSCCSSCEEEEEECSSCSSCEEEEES
T ss_pred             eccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEe-ecCccCceeEEEeCCCCCCeEEEEeC
Confidence            65321    677899999999865555555577   99999999874 44444 5 8999999999999 9999999999


Q ss_pred             CCCEEEeeec
Q 040370          218 DRSVRFWKEI  227 (228)
Q Consensus       218 dg~i~vwd~~  227 (228)
                      ||.|++||+.
T Consensus       284 dg~v~~wd~~  293 (416)
T 2pm9_A          284 DNTVLLWNPE  293 (416)
T ss_dssp             SSEEEEECSS
T ss_pred             CCCEEEeeCC
Confidence            9999999964

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=5.5e-37  Score=233.63  Aligned_cols=220  Identities=16%  Similarity=0.211  Sum_probs=172.8

Q ss_pred             CCcCCccccceeEEEeecCcceEEEEEeC-CCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCe
Q 040370            1 FFDFSKATAKRAFRVIQDTHNVRSVSFHP-SGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGM   79 (228)
Q Consensus         1 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~   79 (228)
                      |||+........++..+|...|++++|+| ++++|++|+.||+|++||++++....... ...+ ...+.+++|+|++++
T Consensus       146 lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~  223 (435)
T 4e54_B          146 LWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFAS-SDTI-NIWFCSLDVSASSRM  223 (435)
T ss_dssp             EECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEEC-CSSC-SCCCCCEEEETTTTE
T ss_pred             EEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEec-cCCC-CccEEEEEECCCCCE
Confidence            68888777666777779999999999998 78999999999999999998765433222 2112 456889999999999


Q ss_pred             EEEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCC-EEEEeeCCCeEEEEEccCCeeEEEEe-cceeeeeee
Q 040370           80 YVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQR-FVLSCGKDSTVKLWEVSSGRLVKQYL-GATHTQLRF  157 (228)
Q Consensus        80 l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~~wd~~~~~~~~~~~-~~~~~~~~~  157 (228)
                      |++|+.||.|++||++. +.+..+..|  ...|.+++|+|++. ++++++.|+.|++||+++.+....+. ...|...+.
T Consensus       224 l~~g~~dg~i~~wd~~~-~~~~~~~~h--~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~  300 (435)
T 4e54_B          224 VVTGDNVGNVILLNMDG-KELWNLRMH--KKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVN  300 (435)
T ss_dssp             EEEECSSSBEEEEESSS-CBCCCSBCC--SSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEE
T ss_pred             EEEEeCCCcEeeeccCc-ceeEEEecc--cceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeecccccc
Confidence            99999999999999864 455556555  77899999999876 78899999999999998876544332 233677888


Q ss_pred             EEEECCCCcEEEEeeCCCCeEEEEEcCCccee------------------------------------------------
Q 040370          158 QAVFNDTEEFVLSIDEPSNEIVIWDALTAEKV------------------------------------------------  189 (228)
Q Consensus       158 ~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~------------------------------------------------  189 (228)
                      +++|+|++.++++++. |+.|++||+++++..                                                
T Consensus       301 ~~~~spdg~~l~s~~~-D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  379 (435)
T 4e54_B          301 AACFSPDGARLLTTDQ-KSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRT  379 (435)
T ss_dssp             ECCBCTTSSEEEEEES-SSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCC
T ss_pred             ceeECCCCCeeEEEcC-CCEEEEEECCCCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCE
Confidence            9999999999888766 799999988654321                                                


Q ss_pred             ------------EEeecCCCCCcEEE-EeCCCCcEEEEecCCCCEEEeeec
Q 040370          190 ------------AKWSSNHIGAPRWI-EHSPAEAAFITCGTDRSVRFWKEI  227 (228)
Q Consensus       190 ------------~~~~~~~~~~v~~~-~~~~~~~~l~s~~~dg~i~vwd~~  227 (228)
                                  ..+..+|...|.++ +|+|++++|++|+ |+.|+|||+.
T Consensus       380 i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~  429 (435)
T 4e54_B          380 IDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM-GYHILIWSQQ  429 (435)
T ss_dssp             EEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC-SSEEEECCCC
T ss_pred             EEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-CCcEEEEECC
Confidence                        11112466667776 6999999999876 8899999974

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=9e-36  Score=243.86  Aligned_cols=204  Identities=13%  Similarity=0.158  Sum_probs=172.0

Q ss_pred             EEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEE
Q 040370           13 FRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLW   92 (228)
Q Consensus        13 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw   92 (228)
                      ....+|...|++++|+|++++||+|+.||.|++|+....+......    + ...|.+++|+| +++|++++.|+.|++|
T Consensus        11 ~~~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~~----~-~~~V~~l~fsp-g~~L~S~s~D~~v~lW   84 (902)
T 2oaj_A           11 TNKYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKLE----D-RSAIKEMRFVK-GIYLVVINAKDTVYVL   84 (902)
T ss_dssp             EEEEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEECS----S-CCCEEEEEEET-TTEEEEEETTCEEEEE
T ss_pred             ccccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEcC----C-CCCEEEEEEcC-CCEEEEEECcCeEEEE
Confidence            3445899999999999999999999999999999998876544322    2 67899999999 8899999999999999


Q ss_pred             eCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEE-E--------ecceeeeeeeEEEECC
Q 040370           93 DGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQ-Y--------LGATHTQLRFQAVFND  163 (228)
Q Consensus        93 d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~-~--------~~~~~~~~~~~~~~~~  163 (228)
                      |+++++.+..+. +  ...|++++|+|+++++++|+.||.|++||+++++.... +        ....|...+.+++|+|
T Consensus        85 d~~~~~~~~~~~-~--~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp  161 (902)
T 2oaj_A           85 SLYSQKVLTTVF-V--PGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNP  161 (902)
T ss_dssp             ETTTCSEEEEEE-C--SSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEET
T ss_pred             ECCCCcEEEEEc-C--CCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEcc
Confidence            999999888775 2  56899999999999999999999999999998775311 1        1123667899999999


Q ss_pred             CCcEEEEeeCCCCeEEEEEcCCcceeEEeecCC------------------CCCcEEEEeCCCCcEEEEecCCCCEEEee
Q 040370          164 TEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNH------------------IGAPRWIEHSPAEAAFITCGTDRSVRFWK  225 (228)
Q Consensus       164 ~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~------------------~~~v~~~~~~~~~~~l~s~~~dg~i~vwd  225 (228)
                      ++...+++++.|+.| +||+++++....+ ..|                  ...|.+++|+|++++|++++.||.|++||
T Consensus       162 ~~~~~l~~g~~dg~v-lWd~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd  239 (902)
T 2oaj_A          162 RDIGTVLISYEYVTL-TYSLVENEIKQSF-IYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWD  239 (902)
T ss_dssp             TEEEEEEEECSSCEE-EEETTTTEEEEEE-CCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEE
T ss_pred             CCCCEEEEEeCCCcE-EEECCCCceEEEE-ecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEE
Confidence            865555556668999 9999999887776 333                  57799999999999999999999999999


Q ss_pred             ec
Q 040370          226 EI  227 (228)
Q Consensus       226 ~~  227 (228)
                      +.
T Consensus       240 ~~  241 (902)
T 2oaj_A          240 AN  241 (902)
T ss_dssp             TT
T ss_pred             CC
Confidence            73

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=7.7e-36  Score=224.90  Aligned_cols=210  Identities=17%  Similarity=0.286  Sum_probs=176.1

Q ss_pred             EEEeecCcceEEEEEeC-CCCEEEEecCCCeEEEEEcccceEEeeeccce---------eeeccceeeEEeCC-CCCeEE
Q 040370           13 FRVIQDTHNVRSVSFHP-SGDFLLAGTDHPIAHLYDVNTFQCYLSANVPE---------ISVNGAINQVRYSS-TGGMYV   81 (228)
Q Consensus        13 ~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~---------~~~~~~i~~~~~~~-~~~~l~   81 (228)
                      ..+.+|..+|++++|+| ++++|++|+.||.|++||+.+++.........         ..|...|.+++|+| ++++|+
T Consensus        37 ~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  116 (408)
T 4a11_B           37 DVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFT  116 (408)
T ss_dssp             EECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEE
T ss_pred             eeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEE
Confidence            34446999999999999 99999999999999999999876433332111         11488999999999 778999


Q ss_pred             EEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCC---CCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeE
Q 040370           82 TASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKD---QRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQ  158 (228)
Q Consensus        82 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~  158 (228)
                      +++.||.|++||+++++....+..   ...+.++.++|.   +.++++++.|+.|++||+++++.+..+..  +...+.+
T Consensus       117 s~~~d~~i~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~--~~~~v~~  191 (408)
T 4a11_B          117 SSSFDKTLKVWDTNTLQTADVFNF---EETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQG--HRQEILA  191 (408)
T ss_dssp             EEETTSEEEEEETTTTEEEEEEEC---SSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECC--CCSCEEE
T ss_pred             EEeCCCeEEEeeCCCCccceeccC---CCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecC--CCCcEEE
Confidence            999999999999999988887764   567889999884   44999999999999999999988888876  6778899


Q ss_pred             EEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEee---------------cCCCCCcEEEEeCCCCcEEEEecCCCCEEE
Q 040370          159 AVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWS---------------SNHIGAPRWIEHSPAEAAFITCGTDRSVRF  223 (228)
Q Consensus       159 ~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~---------------~~~~~~v~~~~~~~~~~~l~s~~~dg~i~v  223 (228)
                      +.|+|++.+++++++.||.|++||++++.......               ..|...|.+++|+|++++|++++.||.|++
T Consensus       192 ~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v  271 (408)
T 4a11_B          192 VSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRL  271 (408)
T ss_dssp             EEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred             EEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEE
Confidence            99999999766556668999999998876332221               468899999999999999999999999999


Q ss_pred             eeec
Q 040370          224 WKEI  227 (228)
Q Consensus       224 wd~~  227 (228)
                      ||+.
T Consensus       272 wd~~  275 (408)
T 4a11_B          272 WNSS  275 (408)
T ss_dssp             EETT
T ss_pred             EECC
Confidence            9974

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.2e-36  Score=228.74  Aligned_cols=224  Identities=10%  Similarity=0.122  Sum_probs=174.5

Q ss_pred             CCcCCc---cccceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcc---cceEEeeeccce--------eeecc
Q 040370            1 FFDFSK---ATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVN---TFQCYLSANVPE--------ISVNG   66 (228)
Q Consensus         1 iwd~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~---~~~~~~~~~~~~--------~~~~~   66 (228)
                      |||+..   ....+.....+|..+|.+++|+|++++|++|+.||.|++||++   +++.........        ..+..
T Consensus        90 vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  169 (437)
T 3gre_A           90 IWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNE  169 (437)
T ss_dssp             EEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCC
T ss_pred             EeECcccccCcccceeeeccCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCccccc
Confidence            466654   2222223334699999999999999999999999999999995   443332221110        00245


Q ss_pred             ceeeEE--eCCCCCeEEEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeE
Q 040370           67 AINQVR--YSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLV  144 (228)
Q Consensus        67 ~i~~~~--~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~  144 (228)
                      .+.++.  ++|+++++++|+.||.|++||+++++.+..+..+.+...|.+++|+|++++|++|+.||.|++||+++++.+
T Consensus       170 ~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~  249 (437)
T 3gre_A          170 YAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLI  249 (437)
T ss_dssp             CEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEE
T ss_pred             CceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEE
Confidence            666776  567899999999999999999999999999987434789999999999999999999999999999999988


Q ss_pred             EEEecceeeeeeeEEEECC----CCcEEEEeeCCCCeEEEEEcCCcceeEEeec-------------------------C
Q 040370          145 KQYLGATHTQLRFQAVFND----TEEFVLSIDEPSNEIVIWDALTAEKVAKWSS-------------------------N  195 (228)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~-------------------------~  195 (228)
                      ..+... +...+.++.++|    ++.++++ ++.|+.|++||+++++....+..                         .
T Consensus       250 ~~~~~~-~~~~v~~~~~~~~~s~~~~~l~s-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  327 (437)
T 3gre_A          250 RSWSFG-DHAPITHVEVCQFYGKNSVIVVG-GSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIR  327 (437)
T ss_dssp             EEEBCT-TCEEEEEEEECTTTCTTEEEEEE-ESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCC
T ss_pred             EEEecC-CCCceEEEEeccccCCCccEEEE-EcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccc
Confidence            877522 455788886654    4556666 55589999999999987776631                         1


Q ss_pred             CCCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370          196 HIGAPRWIEHSPAEAAFITCGTDRSVRFWKEI  227 (228)
Q Consensus       196 ~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~  227 (228)
                      |...|.+++|+ ++++|++|+.||.|++||+.
T Consensus       328 ~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~  358 (437)
T 3gre_A          328 SLNALSTISVS-NDKILLTDEATSSIVMFSLN  358 (437)
T ss_dssp             SGGGGCCEEEE-TTEEEEEEGGGTEEEEEETT
T ss_pred             cCCceEEEEEC-CceEEEecCCCCeEEEEECC
Confidence            66678889998 77999999999999999964

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=7.6e-36  Score=223.74  Aligned_cols=216  Identities=16%  Similarity=0.186  Sum_probs=174.0

Q ss_pred             CCcCCccccceeEEEeecCcceEEEEEeC-CCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCe
Q 040370            1 FFDFSKATAKRAFRVIQDTHNVRSVSFHP-SGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGM   79 (228)
Q Consensus         1 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~   79 (228)
                      |||+........+...+|...|.+++|+| ++++|++++.|+.|++||+... ..........+ ...|.+++|+|++++
T Consensus       100 iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~-~~~v~~~~~~~~~~~  177 (383)
T 3ei3_B          100 LWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGS-VIQVFAKTDSW-DYWYCCVDVSVSRQM  177 (383)
T ss_dssp             EEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTSC-EEEEEECCCCS-SCCEEEEEEETTTTE
T ss_pred             EEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCC-ceEEEeccCCC-CCCeEEEEECCCCCE
Confidence            57887666555555557999999999999 7899999999999999999864 33333333222 578999999999999


Q ss_pred             EEEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCC-EEEEeeCCCeEEEEEccC----CeeEEEEecceeee
Q 040370           80 YVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQR-FVLSCGKDSTVKLWEVSS----GRLVKQYLGATHTQ  154 (228)
Q Consensus        80 l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~~wd~~~----~~~~~~~~~~~~~~  154 (228)
                      |++|+.||.|++||+ +++.+..+..+  ...|.+++|+|+++ ++++++.|+.|++||+++    +..+..+ .  +..
T Consensus       178 l~~~~~d~~i~i~d~-~~~~~~~~~~h--~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~--~~~  251 (383)
T 3ei3_B          178 LATGDSTGRLLLLGL-DGHEIFKEKLH--KAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-P--HEK  251 (383)
T ss_dssp             EEEEETTSEEEEEET-TSCEEEEEECS--SSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-E--CSS
T ss_pred             EEEECCCCCEEEEEC-CCCEEEEeccC--CCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-c--CCC
Confidence            999999999999999 57777777765  77999999999998 999999999999999998    5555555 2  677


Q ss_pred             eeeEEEECC-CCcEEEEeeCCCCeEEEEEcCCcceeEEeec------CCC----------CCcEEEEeCCCCcEEEEecC
Q 040370          155 LRFQAVFND-TEEFVLSIDEPSNEIVIWDALTAEKVAKWSS------NHI----------GAPRWIEHSPAEAAFITCGT  217 (228)
Q Consensus       155 ~~~~~~~~~-~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~------~~~----------~~v~~~~~~~~~~~l~s~~~  217 (228)
                      .+.++.|+| ++.++++++. |+.|++||+++++....+..      .|.          +.+..++|+|++++  +++.
T Consensus       252 ~v~~~~~s~~~~~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~  328 (383)
T 3ei3_B          252 PVNAAYFNPTDSTKLLTTDQ-RNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLND  328 (383)
T ss_dssp             CEEEEEECTTTSCEEEEEES-SSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTC
T ss_pred             ceEEEEEcCCCCCEEEEEcC-CCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCC
Confidence            899999999 9998888766 79999999998877665521      122          33444667777766  7889


Q ss_pred             CCCEEEeeec
Q 040370          218 DRSVRFWKEI  227 (228)
Q Consensus       218 dg~i~vwd~~  227 (228)
                      ||.|++||+.
T Consensus       329 d~~i~iwd~~  338 (383)
T 3ei3_B          329 KRTIDIYDAN  338 (383)
T ss_dssp             CCCEEEEETT
T ss_pred             CCeEEEEecC
Confidence            9999999964

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=5.3e-36  Score=222.17  Aligned_cols=218  Identities=16%  Similarity=0.295  Sum_probs=176.7

Q ss_pred             CCcCCccccceeEEEeecCcceEEEEEeCC---CCEEEEecCCCeEEEEEcccce-EEeeeccceeeeccceeeEE----
Q 040370            1 FFDFSKATAKRAFRVIQDTHNVRSVSFHPS---GDFLLAGTDHPIAHLYDVNTFQ-CYLSANVPEISVNGAINQVR----   72 (228)
Q Consensus         1 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~d~~i~vw~~~~~~-~~~~~~~~~~~~~~~i~~~~----   72 (228)
                      |||+....... ....+|..+|.+++|+|+   +++|++|+.||.|++||+.+++ ....+.   .| ...|.+++    
T Consensus        48 iw~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---~~-~~~v~~~~~~~~  122 (357)
T 3i2n_A           48 LYEIQHGDLKL-LREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVK---GH-KEIINAIDGIGG  122 (357)
T ss_dssp             EEEECSSSEEE-EEEEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEEC---CC-SSCEEEEEEESG
T ss_pred             EEeCCCCcccc-eeeecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEE---ec-ccceEEEeeccc
Confidence            47777554332 333489999999999998   6999999999999999999876 444333   23 78899995    


Q ss_pred             --eCCCCCeEEEEecCCeEEEEeCCCCc-eeeEEecccc--cceeEEEE----ECCCCCEEEEeeCCCeEEEEEccCCee
Q 040370           73 --YSSTGGMYVTASKDGAIRLWDGVSAN-CVRSIVGAHG--TAEATSAN----FTKDQRFVLSCGKDSTVKLWEVSSGRL  143 (228)
Q Consensus        73 --~~~~~~~l~~~~~dg~v~iwd~~~~~-~~~~~~~~~~--~~~i~~~~----~~~~~~~l~~~~~d~~i~~wd~~~~~~  143 (228)
                        |+|++++|++++.||.|++||+++++ ....+..+..  ...+.+++    |+|+++++++++.|+.|++||+++++.
T Consensus       123 ~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~  202 (357)
T 3i2n_A          123 LGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMAL  202 (357)
T ss_dssp             GGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEE
T ss_pred             cccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCce
Confidence              57899999999999999999999887 6666655422  34788888    788999999999999999999999887


Q ss_pred             EEEEecceeeeeeeEEEECC---CCcEEEEeeCCCCeEEEEEcCCcceeEEee----cCCCCCcEEEEeCCCCc-EEEEe
Q 040370          144 VKQYLGATHTQLRFQAVFND---TEEFVLSIDEPSNEIVIWDALTAEKVAKWS----SNHIGAPRWIEHSPAEA-AFITC  215 (228)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~----~~~~~~v~~~~~~~~~~-~l~s~  215 (228)
                      .....   +...+..+.|+|   ++.++++++. |+.|++||+++++....+.    .+|...|.+++|+|+++ +|+++
T Consensus       203 ~~~~~---~~~~v~~~~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~  278 (357)
T 3i2n_A          203 RWETN---IKNGVCSLEFDRKDISMNKLVATSL-EGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTA  278 (357)
T ss_dssp             EEEEE---CSSCEEEEEESCSSSSCCEEEEEES-TTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEE
T ss_pred             eeecC---CCCceEEEEcCCCCCCCCEEEEECC-CCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEE
Confidence            54432   567889999999   8888888665 7999999998877654442    38999999999999998 89999


Q ss_pred             cCCCCEEEeeec
Q 040370          216 GTDRSVRFWKEI  227 (228)
Q Consensus       216 ~~dg~i~vwd~~  227 (228)
                      +.||.|++||+.
T Consensus       279 ~~dg~i~iwd~~  290 (357)
T 3i2n_A          279 GGAGGLHLWKYE  290 (357)
T ss_dssp             ETTSEEEEEEEE
T ss_pred             eCCCcEEEeecC
Confidence            999999999974

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=1.8e-36  Score=225.36  Aligned_cols=219  Identities=19%  Similarity=0.303  Sum_probs=176.7

Q ss_pred             CCcCCccccceeEEEee---cCcceEEEEEeCC----CCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEe
Q 040370            1 FFDFSKATAKRAFRVIQ---DTHNVRSVSFHPS----GDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRY   73 (228)
Q Consensus         1 iwd~~~~~~~~~~~~~~---~~~~v~~~~~~~~----~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~   73 (228)
                      |||+........+....   |...|.+++|+|+    +.+|++|+.||.|++||+.+++....+..   | ...|.+++|
T Consensus        48 vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~---~-~~~i~~~~~  123 (366)
T 3k26_A           48 LYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVG---H-GNAINELKF  123 (366)
T ss_dssp             EEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEES---C-CSCEEEEEE
T ss_pred             EEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecC---C-CCcEEEEEE
Confidence            47776554433333322   6688999999998    67999999999999999999887665542   2 789999999


Q ss_pred             CC-CCCeEEEEecCCeEEEEeCCCCceeeEEec-ccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEec--
Q 040370           74 SS-TGGMYVTASKDGAIRLWDGVSANCVRSIVG-AHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLG--  149 (228)
Q Consensus        74 ~~-~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~--  149 (228)
                      +| ++++|++|+.||.|++||+++++....+.. ..+...|.+++|+|++++|++++.|+.|++||+++++....+..  
T Consensus       124 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  203 (366)
T 3k26_A          124 HPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESY  203 (366)
T ss_dssp             CSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHH
T ss_pred             CCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeE
Confidence            99 899999999999999999999988887731 12378999999999999999999999999999987654432211  


Q ss_pred             ------------------------ceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcce--------------eEE
Q 040370          150 ------------------------ATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEK--------------VAK  191 (228)
Q Consensus       150 ------------------------~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~--------------~~~  191 (228)
                                              ..+...+.++.|+  +.++++++. |+.|++||+++++.              +..
T Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~-d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~  280 (366)
T 3k26_A          204 DYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSC-ENAIVCWKPGKMEDDIDKIKPSESNVTILGR  280 (366)
T ss_dssp             TCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECS-SSEEEEEEESSTTCCGGGCCTTCCCEEEEEE
T ss_pred             EecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEec-CCEEEEEeCCCccccccccccCCcchheecc
Confidence                                    1156677888887  556666554 89999999988754              444


Q ss_pred             eecCCCCCcEEEEeCCC--CcEEEEecCCCCEEEeeec
Q 040370          192 WSSNHIGAPRWIEHSPA--EAAFITCGTDRSVRFWKEI  227 (228)
Q Consensus       192 ~~~~~~~~v~~~~~~~~--~~~l~s~~~dg~i~vwd~~  227 (228)
                      + ..|...|.+++|+|+  +++|++++.||.|++||+.
T Consensus       281 ~-~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~  317 (366)
T 3k26_A          281 F-DYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLE  317 (366)
T ss_dssp             E-ECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECC
T ss_pred             c-cccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECC
Confidence            4 678999999999999  9999999999999999974

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=4.6e-35  Score=238.25  Aligned_cols=208  Identities=17%  Similarity=0.264  Sum_probs=183.3

Q ss_pred             eeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEE
Q 040370           11 RAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIR   90 (228)
Q Consensus        11 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~   90 (228)
                      ....+.+|...|++++|+|++++|++|+.||.|++||+.+++....+..   | ...|.+++|+|++++|++++.||.|+
T Consensus         5 ~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~---~-~~~v~~~~~s~~~~~l~~~~~dg~i~   80 (814)
T 3mkq_A            5 IKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQV---T-ETPVRAGKFIARKNWIIVGSDDFRIR   80 (814)
T ss_dssp             CEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEEC---C-SSCEEEEEEEGGGTEEEEEETTSEEE
T ss_pred             cceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEec---C-CCcEEEEEEeCCCCEEEEEeCCCeEE
Confidence            4456678999999999999999999999999999999999887766553   2 78999999999999999999999999


Q ss_pred             EEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCC-eeEEEEecceeeeeeeEEEECC-CCcEE
Q 040370           91 LWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSG-RLVKQYLGATHTQLRFQAVFND-TEEFV  168 (228)
Q Consensus        91 iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~  168 (228)
                      +||+.+++.+..+..|  ...|.+++|+|++++|++++.||.|++||++++ .....+..  +...+.++.|+| ++..+
T Consensus        81 vw~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~--~~~~v~~~~~~p~~~~~l  156 (814)
T 3mkq_A           81 VFNYNTGEKVVDFEAH--PDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEG--HEHFVMCVAFNPKDPSTF  156 (814)
T ss_dssp             EEETTTCCEEEEEECC--SSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEEC--CSSCEEEEEEETTEEEEE
T ss_pred             EEECCCCcEEEEEecC--CCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcC--CCCcEEEEEEEcCCCCEE
Confidence            9999999999888776  778999999999999999999999999999987 55566655  667789999999 66666


Q ss_pred             EEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCC--CCcEEEEecCCCCEEEeeec
Q 040370          169 LSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSP--AEAAFITCGTDRSVRFWKEI  227 (228)
Q Consensus       169 ~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~s~~~dg~i~vwd~~  227 (228)
                      ++++. ||.|++||++++.....+...+...+.+++|+|  ++.+|++++.||.|++||+.
T Consensus       157 ~~~~~-dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~  216 (814)
T 3mkq_A          157 ASGCL-DRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQ  216 (814)
T ss_dssp             EEEET-TSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETT
T ss_pred             EEEeC-CCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECC
Confidence            66554 899999999998888887666668999999999  99999999999999999963

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=2.1e-35  Score=222.12  Aligned_cols=225  Identities=13%  Similarity=0.187  Sum_probs=181.0

Q ss_pred             CCcCCccccc---eeEEEeec-----CcceEEEEEe----CCCCE-EEEecCCCeEEEEEccc------ceEEe-----e
Q 040370            1 FFDFSKATAK---RAFRVIQD-----THNVRSVSFH----PSGDF-LLAGTDHPIAHLYDVNT------FQCYL-----S   56 (228)
Q Consensus         1 iwd~~~~~~~---~~~~~~~~-----~~~v~~~~~~----~~~~~-l~~~~~d~~i~vw~~~~------~~~~~-----~   56 (228)
                      +||+......   ....+..|     ...|.+++|+    |++++ |++++.||.|++||+.+      ++...     .
T Consensus        95 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  174 (397)
T 1sq9_A           95 FYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLE  174 (397)
T ss_dssp             EEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEE
T ss_pred             EEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcce
Confidence            3665543321   14445567     5899999999    99999 99999999999999988      55433     2


Q ss_pred             ecc---ceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCCCceeeEEec---c-cccceeEEEEECCCCCEEEEeeC
Q 040370           57 ANV---PEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVG---A-HGTAEATSANFTKDQRFVLSCGK  129 (228)
Q Consensus        57 ~~~---~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~---~-~~~~~i~~~~~~~~~~~l~~~~~  129 (228)
                      +..   ....+...|.+++|+|++ ++++++.||.|++||+++++.+..+..   + .....+.+++|+|++++|++++.
T Consensus       175 ~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~  253 (397)
T 1sq9_A          175 LQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHD  253 (397)
T ss_dssp             EEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEE
T ss_pred             eeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEec
Confidence            210   001137789999999999 999999999999999999988888876   3 01568999999999999999999


Q ss_pred             C---CeEEEEEccCCeeEEEEecce-----------eeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeec-
Q 040370          130 D---STVKLWEVSSGRLVKQYLGAT-----------HTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSS-  194 (228)
Q Consensus       130 d---~~i~~wd~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~-  194 (228)
                      |   +.|++||+++++.+..+....           +...+..+.|+|++.++++++. |+.|++||+++++.+..+.. 
T Consensus       254 d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~  332 (397)
T 1sq9_A          254 SNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGW-DGKLRFWDVKTKERITTLNMH  332 (397)
T ss_dssp             ETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEET-TSEEEEEETTTTEEEEEEECC
T ss_pred             CCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeC-CCeEEEEEcCCCceeEEEecc
Confidence            9   999999999998888876521           5677899999999999888765 89999999999998888831 


Q ss_pred             ----CC---------------CCCcEEEEeCCCC----------cEEEEecCCCCEEEeeec
Q 040370          195 ----NH---------------IGAPRWIEHSPAE----------AAFITCGTDRSVRFWKEI  227 (228)
Q Consensus       195 ----~~---------------~~~v~~~~~~~~~----------~~l~s~~~dg~i~vwd~~  227 (228)
                          .|               ..+|.+++|+|++          ++|++++.||.|++||+.
T Consensus       333 ~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~  394 (397)
T 1sq9_A          333 CDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREA  394 (397)
T ss_dssp             GGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEE
T ss_pred             cCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcC
Confidence                56               8999999999998          799999999999999974

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.9e-36  Score=234.22  Aligned_cols=208  Identities=11%  Similarity=0.088  Sum_probs=167.1

Q ss_pred             EEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeE--EeCCCC-CeEEEEecCCeE
Q 040370           13 FRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQV--RYSSTG-GMYVTASKDGAI   89 (228)
Q Consensus        13 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~--~~~~~~-~~l~~~~~dg~v   89 (228)
                      ..+.+|...|++++|+|+ ..|++|+.||+|++||++++....  .....| ...|.++  .|+|++ ++|++|+.|++|
T Consensus       260 ~~l~~h~~~v~sv~~s~~-~~lasgs~DgtV~lWD~~~~~~~~--~~~~~H-~~~V~sv~~~~s~~g~~~laS~S~D~tv  335 (524)
T 2j04_B          260 LTLSLADSLITTFDFLSP-TTVVCGFKNGFVAEFDLTDPEVPS--FYDQVH-DSYILSVSTAYSDFEDTVVSTVAVDGYF  335 (524)
T ss_dssp             EEECCTTTCEEEEEESSS-SEEEEEETTSEEEEEETTBCSSCS--EEEECS-SSCEEEEEEECCTTSCCEEEEEETTSEE
T ss_pred             EEEEcCCCCEEEEEecCC-CeEEEEeCCCEEEEEECCCCCCce--EEeecc-cccEEEEEEEcCCCCCeEEEEeccCCeE
Confidence            456689999999999986 489999999999999998763211  111223 8899999  578887 899999999999


Q ss_pred             EEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEE
Q 040370           90 RLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVL  169 (228)
Q Consensus        90 ~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (228)
                      ++||+++++....+..+.....+.+++|+|+++.+++++.|++|++||++++..+..+.+  |...+.+++|+|++++++
T Consensus       336 klWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~g--H~~~V~sva~Sp~g~~l~  413 (524)
T 2j04_B          336 YIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVS--RETTITAIGVSRLHPMVL  413 (524)
T ss_dssp             EEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEE--CSSCEEEEECCSSCCBCE
T ss_pred             EEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeec--CCCceEEEEeCCCCCeEE
Confidence            999999988877776653234578999999999999999999999999999888777776  778899999999999988


Q ss_pred             EeeCCCCeEEEEEcCCc-----c---------e------------------------------eEEeecCCCCCcEEEEe
Q 040370          170 SIDEPSNEIVIWDALTA-----E---------K------------------------------VAKWSSNHIGAPRWIEH  205 (228)
Q Consensus       170 ~~~~~d~~i~i~d~~~~-----~---------~------------------------------~~~~~~~~~~~v~~~~~  205 (228)
                      +++. |++|++||+...     +         .                              +.. ..+|...|.+++|
T Consensus       414 Sgs~-Dgtv~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~-l~gh~~~V~~Vaf  491 (524)
T 2j04_B          414 AGSA-DGSLIITNAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAK-IDAHGINITCTKW  491 (524)
T ss_dssp             EEET-TTEEECCBSCSSTTTCC------CCCCEEEECBCCSSSCEEEECCCCCCCC--------------CCCSCCCEEE
T ss_pred             EEEC-CCEEEEEechHhhccccccCccceeeeEEEEeccCCCCCeEEccCCceecccccCCcceee-ecCCCceEEEEEC
Confidence            7655 899999985321     0         0                              011 1358889999999


Q ss_pred             CCCCc---EEEEecCCCCEEEeeecC
Q 040370          206 SPAEA---AFITCGTDRSVRFWKEIL  228 (228)
Q Consensus       206 ~~~~~---~l~s~~~dg~i~vwd~~l  228 (228)
                      +|++.   .+++|+.||.|+||++.+
T Consensus       492 sp~~~~~~~lAsg~~~g~vrlw~l~~  517 (524)
T 2j04_B          492 NETSAGGKCYAFSNSAGLLTLEYLSL  517 (524)
T ss_dssp             CCSTTTTTEEEEECTTSEEEEEECSC
T ss_pred             CCCCCccHHHHhhccCceEEEEEccc
Confidence            99854   999999999999999853

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=7.2e-35  Score=219.80  Aligned_cols=214  Identities=15%  Similarity=0.261  Sum_probs=178.1

Q ss_pred             CCcCCccccceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEccc-ceEEeeeccceeeeccceeeEEeCCCCCe
Q 040370            1 FFDFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNT-FQCYLSANVPEISVNGAINQVRYSSTGGM   79 (228)
Q Consensus         1 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~   79 (228)
                      |||+...  +....+.+|...|.+++|  ++++|++|+.||.|++||+.. ........   .| ...|.+++|+|++++
T Consensus       160 iwd~~~~--~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~---~~-~~~v~~~~~~~~~~~  231 (401)
T 4aez_A          160 IYDVESQ--TKLRTMAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQIGTLQ---GH-SSEVCGLAWRSDGLQ  231 (401)
T ss_dssp             EEETTTC--CEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEE---CC-SSCEEEEEECTTSSE
T ss_pred             EEECcCC--eEEEEecCCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCcceeeEEc---CC-CCCeeEEEEcCCCCE
Confidence            4676643  344555689999999999  467999999999999999984 33333332   23 789999999999999


Q ss_pred             EEEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCC-EEEEee--CCCeEEEEEccCCeeEEEEecceeeeee
Q 040370           80 YVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQR-FVLSCG--KDSTVKLWEVSSGRLVKQYLGATHTQLR  156 (228)
Q Consensus        80 l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~--~d~~i~~wd~~~~~~~~~~~~~~~~~~~  156 (228)
                      |++|+.||.|++||+++++....+..+  ...|.+++|+|++. .+++++  .|+.|++||+++++.+..+.   +...+
T Consensus       232 l~s~~~d~~v~iwd~~~~~~~~~~~~~--~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~---~~~~v  306 (401)
T 4aez_A          232 LASGGNDNVVQIWDARSSIPKFTKTNH--NAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD---AGSQV  306 (401)
T ss_dssp             EEEEETTSCEEEEETTCSSEEEEECCC--SSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE---CSSCE
T ss_pred             EEEEeCCCeEEEccCCCCCccEEecCC--cceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe---CCCcE
Confidence            999999999999999999888887765  77899999999764 555654  79999999999998888875   45678


Q ss_pred             eEEEECCCCcEEEEe-eCCCCeEEEEEcCCcceeEEe-ecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370          157 FQAVFNDTEEFVLSI-DEPSNEIVIWDALTAEKVAKW-SSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEI  227 (228)
Q Consensus       157 ~~~~~~~~~~~~~~~-~~~d~~i~i~d~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~  227 (228)
                      ..+.|+|++.+++++ |..||.|++||+++++..... ..+|...|.+++|+|++++|++++.||.|++||+.
T Consensus       307 ~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~  379 (401)
T 4aez_A          307 TSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVY  379 (401)
T ss_dssp             EEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECC
T ss_pred             EEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECC
Confidence            999999999999886 446899999999987655443 25899999999999999999999999999999974

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.1e-35  Score=239.93  Aligned_cols=222  Identities=18%  Similarity=0.258  Sum_probs=179.0

Q ss_pred             CCcCCccccceeEEEeecCcceEEEEEeCC--CCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCC--
Q 040370            1 FFDFSKATAKRAFRVIQDTHNVRSVSFHPS--GDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSST--   76 (228)
Q Consensus         1 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--   76 (228)
                      |||+..........+.+|..+|++++|+|+  +++|++|+.||.|++||+.+++....... ..| ...|.+++|+|+  
T Consensus        35 vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~-~~h-~~~V~~v~~sp~~~  112 (753)
T 3jro_A           35 IFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVH-AVH-SASVNSVQWAPHEY  112 (753)
T ss_dssp             EEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEE-CCC-SSCEEEEEECCGGG
T ss_pred             EEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccc-cCC-CCCeEEEEECCCCC
Confidence            477765555666677789999999999987  99999999999999999998863222211 123 789999999999  


Q ss_pred             CCeEEEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECC-------------CCCEEEEeeCCCeEEEEEccCCe-
Q 040370           77 GGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTK-------------DQRFVLSCGKDSTVKLWEVSSGR-  142 (228)
Q Consensus        77 ~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~-------------~~~~l~~~~~d~~i~~wd~~~~~-  142 (228)
                      ++.+++|+.||.|++||++++..........+...|.+++|+|             ++.++++|+.||.|++||++++. 
T Consensus       113 ~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~  192 (753)
T 3jro_A          113 GPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQ  192 (753)
T ss_dssp             CSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTT
T ss_pred             CCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcc
Confidence            9999999999999999999874333222223378999999999             58999999999999999998873 


Q ss_pred             ---eEEEEecceeeeeeeEEEECCC---CcEEEEeeCCCCeEEEEEcCCcceeE----EeecCCCCCcEEEEeCCCCcEE
Q 040370          143 ---LVKQYLGATHTQLRFQAVFNDT---EEFVLSIDEPSNEIVIWDALTAEKVA----KWSSNHIGAPRWIEHSPAEAAF  212 (228)
Q Consensus       143 ---~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~d~~i~i~d~~~~~~~~----~~~~~~~~~v~~~~~~~~~~~l  212 (228)
                         ....+..  |...+.++.|+|+   +.++++++. ||.|++||+++++...    .....|...|.+++|+|++++|
T Consensus       193 ~~~~~~~~~~--h~~~V~~l~~sp~~~~~~~l~s~s~-Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l  269 (753)
T 3jro_A          193 TYVLESTLEG--HSDWVRDVAWSPTVLLRSYLASVSQ-DRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVL  269 (753)
T ss_dssp             EEEEEEEECC--CSSCEEEEEECCCCSSSEEEEEEES-SSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCE
T ss_pred             cceeeeeecC--CCCcEEEEEeccCCCCCCEEEEEec-CCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEE
Confidence               3444444  6778999999999   777777665 8999999998874211    1114588899999999999999


Q ss_pred             EEecCCCCEEEeeec
Q 040370          213 ITCGTDRSVRFWKEI  227 (228)
Q Consensus       213 ~s~~~dg~i~vwd~~  227 (228)
                      ++++.||.|++||+.
T Consensus       270 ~s~s~Dg~I~vwd~~  284 (753)
T 3jro_A          270 ALSGGDNKVTLWKEN  284 (753)
T ss_dssp             EEECSSSCEECCBCC
T ss_pred             EEEcCCCEEEEEecC
Confidence            999999999999974

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=4e-35  Score=238.63  Aligned_cols=216  Identities=16%  Similarity=0.261  Sum_probs=185.8

Q ss_pred             CCcCCccccceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeE
Q 040370            1 FFDFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMY   80 (228)
Q Consensus         1 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l   80 (228)
                      |||+...  .....+..|..+|++++|+|++++|++|+.||.|++||+.+++....+..   | ...|++++|+|++++|
T Consensus        39 iwd~~~~--~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~---~-~~~v~~~~~s~~~~~l  112 (814)
T 3mkq_A           39 IWNYETQ--VEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEA---H-PDYIRSIAVHPTKPYV  112 (814)
T ss_dssp             EEETTTT--EEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEEC---C-SSCEEEEEECSSSSEE
T ss_pred             EEECCCC--ceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEec---C-CCCEEEEEEeCCCCEE
Confidence            4776643  34455567999999999999999999999999999999999887665542   2 7889999999999999


Q ss_pred             EEEecCCeEEEEeCCCC-ceeeEEecccccceeEEEEECC-CCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeE
Q 040370           81 VTASKDGAIRLWDGVSA-NCVRSIVGAHGTAEATSANFTK-DQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQ  158 (228)
Q Consensus        81 ~~~~~dg~v~iwd~~~~-~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~  158 (228)
                      ++++.||.|++||++++ .....+..+  ...+.+++|+| +++.+++++.||.|++||+++++....+..+ +...+..
T Consensus       113 ~~~~~dg~i~vw~~~~~~~~~~~~~~~--~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~-~~~~v~~  189 (814)
T 3mkq_A          113 LSGSDDLTVKLWNWENNWALEQTFEGH--EHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTG-QERGVNY  189 (814)
T ss_dssp             EEEETTSEEEEEEGGGTSEEEEEEECC--SSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECC-CTTCCCE
T ss_pred             EEEcCCCEEEEEECCCCceEEEEEcCC--CCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecC-CCCCEEE
Confidence            99999999999999987 555555554  67899999999 8899999999999999999988777776543 3366788


Q ss_pred             EEECC--CCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370          159 AVFND--TEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEI  227 (228)
Q Consensus       159 ~~~~~--~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~  227 (228)
                      +.|+|  ++.++++++. |+.|++||+++++.+..+ .+|...|.+++|+|++++|++++.||.|++||+.
T Consensus       190 ~~~~~~~~~~~l~~~~~-dg~i~~~d~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~  258 (814)
T 3mkq_A          190 VDYYPLPDKPYMITASD-DLTIKIWDYQTKSCVATL-EGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSS  258 (814)
T ss_dssp             EEECCSTTCCEEEEECT-TSEEEEEETTTTEEEEEE-ECCSSCEEEEEECSSSSEEEEEETTSCEEEEETT
T ss_pred             EEEEECCCCCEEEEEeC-CCEEEEEECCCCcEEEEE-cCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECC
Confidence            89998  8888887665 799999999999888877 6899999999999999999999999999999964

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.1e-34  Score=219.49  Aligned_cols=212  Identities=21%  Similarity=0.368  Sum_probs=174.4

Q ss_pred             ceeEEEeecCcceEEEEEeCCCC-EEEEecCCCeEEEEEc----ccce------EEeeeccc-eee-----eccceeeEE
Q 040370           10 KRAFRVIQDTHNVRSVSFHPSGD-FLLAGTDHPIAHLYDV----NTFQ------CYLSANVP-EIS-----VNGAINQVR   72 (228)
Q Consensus        10 ~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~vw~~----~~~~------~~~~~~~~-~~~-----~~~~i~~~~   72 (228)
                      ...+....|..+|++++|+|+++ +|++|+.||.|++|++    .+++      ....+... ..+     |...|++++
T Consensus        36 ~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  115 (425)
T 1r5m_A           36 VKILKEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLA  115 (425)
T ss_dssp             CEECEEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEE
T ss_pred             hhheeeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEE
Confidence            34555667889999999999999 9999999999999999    7776      23322221 111     367999999


Q ss_pred             eCCCCCeEEEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecc--
Q 040370           73 YSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGA--  150 (228)
Q Consensus        73 ~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~--  150 (228)
                      |+|++++|++++.||.|++|| .+++....+..+  ...|.+++|+|++++|++++.|+.|++||+++++.+..+..+  
T Consensus       116 ~s~~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~  192 (425)
T 1r5m_A          116 WSHDGNSIVTGVENGELRLWN-KTGALLNVLNFH--RAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKET  192 (425)
T ss_dssp             ECTTSSEEEEEETTSCEEEEE-TTSCEEEEECCC--CSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC--
T ss_pred             EcCCCCEEEEEeCCCeEEEEe-CCCCeeeeccCC--CccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeecccc
Confidence            999999999999999999999 667777777765  779999999999999999999999999999887766544321  


Q ss_pred             ----------------------------------------------------eeeeeeeEEEECCCCcEEEEeeCCCCeE
Q 040370          151 ----------------------------------------------------THTQLRFQAVFNDTEEFVLSIDEPSNEI  178 (228)
Q Consensus       151 ----------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~d~~i  178 (228)
                                                                          .+...+..+.|+|++.++++++. |+.|
T Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~~i  271 (425)
T 1r5m_A          193 GGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASD-DGTL  271 (425)
T ss_dssp             -------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEET-TSCE
T ss_pred             CccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcC-CCEE
Confidence                                                                13456778899999998888665 7999


Q ss_pred             EEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370          179 VIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEI  227 (228)
Q Consensus       179 ~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~  227 (228)
                      ++||+++++....+ ..|...|.+++|+|++ ++++++.||.|++||+.
T Consensus       272 ~i~d~~~~~~~~~~-~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~  318 (425)
T 1r5m_A          272 RIWHGGNGNSQNCF-YGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLK  318 (425)
T ss_dssp             EEECSSSBSCSEEE-CCCSSCEEEEEEETTT-EEEEEETTSEEEEEETT
T ss_pred             EEEECCCCccceEe-cCCCccEEEEEECCCC-EEEEEeCCCcEEEEECC
Confidence            99999999888887 6899999999999999 99999999999999963

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.6e-35  Score=236.93  Aligned_cols=206  Identities=14%  Similarity=0.198  Sum_probs=169.2

Q ss_pred             EEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccc--eEEeeeccceeeeccceeeEEeCCC--CCeEEEEecCCeE
Q 040370           14 RVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTF--QCYLSANVPEISVNGAINQVRYSST--GGMYVTASKDGAI   89 (228)
Q Consensus        14 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~--~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~dg~v   89 (228)
                      .+.+|.++|++++|+|++++|++|+.||.|++||+.++  +....+.   .| .+.|++++|+|+  +++|++|+.||.|
T Consensus         4 ~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~---~h-~~~V~~l~~s~~~~~~~l~s~s~Dg~I   79 (753)
T 3jro_A            4 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLT---GH-EGPVWRVDWAHPKFGTILASCSYDGKV   79 (753)
T ss_dssp             ----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEEC---CC-SSCEEEEEECCTTSCSEEEEEETTSCE
T ss_pred             ecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceecc---CC-cCceEEEEecCCCCCCEEEEEeCCCeE
Confidence            34589999999999999999999999999999999844  3333332   33 889999999987  9999999999999


Q ss_pred             EEEeCCCCc--eeeEEecccccceeEEEEECCC--CCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCC-
Q 040370           90 RLWDGVSAN--CVRSIVGAHGTAEATSANFTKD--QRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDT-  164 (228)
Q Consensus        90 ~iwd~~~~~--~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-  164 (228)
                      ++||+++++  ....+..+  ...|.+++|+|+  ++++++|+.||.|++||++++..........+...+.++.|+|. 
T Consensus        80 ~vwd~~~~~~~~~~~~~~h--~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~  157 (753)
T 3jro_A           80 LIWKEENGRWSQIAVHAVH--SASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPAT  157 (753)
T ss_dssp             EEEEEETTEEEEEEEECCC--SSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC
T ss_pred             EEEECCCCcccccccccCC--CCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcc
Confidence            999999887  44444444  789999999999  99999999999999999998744333333337778999999994 


Q ss_pred             ------------CcEEEEeeCCCCeEEEEEcCCcc----eeEEeecCCCCCcEEEEeCCC---CcEEEEecCCCCEEEee
Q 040370          165 ------------EEFVLSIDEPSNEIVIWDALTAE----KVAKWSSNHIGAPRWIEHSPA---EAAFITCGTDRSVRFWK  225 (228)
Q Consensus       165 ------------~~~~~~~~~~d~~i~i~d~~~~~----~~~~~~~~~~~~v~~~~~~~~---~~~l~s~~~dg~i~vwd  225 (228)
                                  +..+++++. ||.|++||++++.    ....+ .+|..+|.+++|+|+   +.+|++++.||.|++||
T Consensus       158 ~~~~~~~~~~~d~~~l~sgs~-dg~I~iwd~~~~~~~~~~~~~~-~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd  235 (753)
T 3jro_A          158 IEEDGEHNGTKESRKFVTGGA-DNLVKIWKYNSDAQTYVLESTL-EGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWT  235 (753)
T ss_dssp             ---------CGGGCCEEEEET-TSCEEEEEEETTTTEEEEEEEE-CCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEE
T ss_pred             cccccccccCCCCCEEEEEEC-CCeEEEEeccCCcccceeeeee-cCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEec
Confidence                        677777655 8999999998874    33334 689999999999999   89999999999999999


Q ss_pred             ec
Q 040370          226 EI  227 (228)
Q Consensus       226 ~~  227 (228)
                      +.
T Consensus       236 ~~  237 (753)
T 3jro_A          236 QD  237 (753)
T ss_dssp             ES
T ss_pred             CC
Confidence            74

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=3.5e-34  Score=215.84  Aligned_cols=218  Identities=15%  Similarity=0.262  Sum_probs=179.4

Q ss_pred             CCcCCccccceeEEEe-----------ecCcceEEEEEeC-CCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccce
Q 040370            1 FFDFSKATAKRAFRVI-----------QDTHNVRSVSFHP-SGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAI   68 (228)
Q Consensus         1 iwd~~~~~~~~~~~~~-----------~~~~~v~~~~~~~-~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i   68 (228)
                      |||+............           +|...|.+++|+| ++.+|++++.||.|++||+.+++.......     ...+
T Consensus        70 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-----~~~~  144 (408)
T 4a11_B           70 LYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNF-----EETV  144 (408)
T ss_dssp             EEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEEC-----SSCE
T ss_pred             EEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceeccC-----CCce
Confidence            4777765554444322           3999999999999 788999999999999999999887665542     6778


Q ss_pred             eeEEeCCC---CCeEEEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCC-EEEEeeCCCeEEEEEccCCe-e
Q 040370           69 NQVRYSST---GGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQR-FVLSCGKDSTVKLWEVSSGR-L  143 (228)
Q Consensus        69 ~~~~~~~~---~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~~wd~~~~~-~  143 (228)
                      .++.|+|.   +.++++++.||.|++||+++++....+..+  ...|.+++|+|+++ .+++++.||.|++||++++. .
T Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~--~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~  222 (408)
T 4a11_B          145 YSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGH--RQEILAVSWSPRYDYILATASADSRVKLWDVRRASGC  222 (408)
T ss_dssp             EEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCC--CSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCC
T ss_pred             eeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCC--CCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcc
Confidence            99999884   459999999999999999999988888765  77899999999988 58999999999999998765 2


Q ss_pred             EEEEec-------------ceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcce----------------------
Q 040370          144 VKQYLG-------------ATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEK----------------------  188 (228)
Q Consensus       144 ~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~----------------------  188 (228)
                      ...+..             ..+...+..+.|+|++.++++++. |+.|++||+++++.                      
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (408)
T 4a11_B          223 LITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGT-DNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSC  301 (408)
T ss_dssp             SEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEET-TSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECC
T ss_pred             cccccccccccceeeccccccccCceeEEEEcCCCCEEEEecC-CCeEEEEECCCCccceeccccccccccccceeEEec
Confidence            333211             236678899999999999988766 79999999876542                      


Q ss_pred             -------------------------eEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370          189 -------------------------VAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEI  227 (228)
Q Consensus       189 -------------------------~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~  227 (228)
                                               +..+ .+|...|.+++|+|++++|++++.||.|++||+.
T Consensus       302 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~  364 (408)
T 4a11_B          302 GCSSEFVFVPYGSTIAVYTVYSGEQITML-KGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPS  364 (408)
T ss_dssp             SSSSCEEEEEETTEEEEEETTTCCEEEEE-CCCSSCEEEEEEETTTTEEEEEETTSCEEEEEEC
T ss_pred             CCCceEEEEecCCEEEEEECcCCcceeee-ccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCC
Confidence                                     2233 5799999999999999999999999999999975

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=100.00  E-value=5.2e-35  Score=210.61  Aligned_cols=199  Identities=9%  Similarity=0.059  Sum_probs=142.8

Q ss_pred             ceEEEEEeCC----CCEEEEecC--------------------CCeEEEEEcc-cceEEeeeccceeeeccceeeEEeCC
Q 040370           21 NVRSVSFHPS----GDFLLAGTD--------------------HPIAHLYDVN-TFQCYLSANVPEISVNGAINQVRYSS   75 (228)
Q Consensus        21 ~v~~~~~~~~----~~~l~~~~~--------------------d~~i~vw~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~   75 (228)
                      .|++++++|+    ++.+++++.                    |+.|++|++. +++.+.....   | ...++.++|+|
T Consensus       113 ~v~sla~spd~~~~~~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~---~-~~~v~~l~fs~  188 (356)
T 2w18_A          113 EIRALFCSSDDESEKQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFL---M-PPEETILTFAE  188 (356)
T ss_dssp             EEEEECC------CCEEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEE---C-CCSSCEEEEEE
T ss_pred             ceEEEEECCCccccccEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCCCceeeeecc---C-CCceeeEEeec
Confidence            6777888888    777776553                    6777777773 3554443332   2 66778888888


Q ss_pred             ---CCCeEEEEecCCeEEEEeCCCCceeeEEeccc-ccceeEEEEECCCCCEE------------EEeeCCCeEEEEEcc
Q 040370           76 ---TGGMYVTASKDGAIRLWDGVSANCVRSIVGAH-GTAEATSANFTKDQRFV------------LSCGKDSTVKLWEVS  139 (228)
Q Consensus        76 ---~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l------------~~~~~d~~i~~wd~~  139 (228)
                         ++..|++++.|++|+|||+++++.++.+..++ +...+.+++|+|++.++            ++|+.|++|++||..
T Consensus       189 ~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~  268 (356)
T 2w18_A          189 VQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPK  268 (356)
T ss_dssp             EETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETT
T ss_pred             cCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECC
Confidence               67899999999999999999999999997653 23567888999999876            568889999999999


Q ss_pred             CCeeEEEEec---ceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcE-EEEeCCCCcEEEEe
Q 040370          140 SGRLVKQYLG---ATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPR-WIEHSPAEAAFITC  215 (228)
Q Consensus       140 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~s~  215 (228)
                      +++.+..+..   ..+........+  ++..+++ ++.|++|+|||+.+++.+.++ .+|...+. .++|+|+|++|++|
T Consensus       269 tgk~l~v~~~~~p~Gh~~~~lsg~~--sg~~lAS-gS~DgTIkIWDl~tGk~l~tL-~gH~~~vvs~vafSPDG~~LaSG  344 (356)
T 2w18_A          269 TTLSVGVMLYCLPPGQAGRFLEGDV--KDHCAAA-ILTSGTIAIWDLLLGQCTALL-PPVSDQHWSFVKWSGTDSHLLAG  344 (356)
T ss_dssp             TTEEEEEEEECCCTTCCCCEEEEEE--ETTEEEE-EETTSCEEEEETTTCSEEEEE-CCC--CCCCEEEECSSSSEEEEE
T ss_pred             CCEEEEEEEeeccCCCcceeEcccc--CCCEEEE-EcCCCcEEEEECCCCcEEEEe-cCCCCCeEEEEEECCCCCEEEEE
Confidence            9988765521   112222222222  2444454 556899999999999999988 67776655 68999999999999


Q ss_pred             cCCCCEEEeeec
Q 040370          216 GTDRSVRFWKEI  227 (228)
Q Consensus       216 ~~dg~i~vwd~~  227 (228)
                      +.|++|+|||+.
T Consensus       345 S~D~TIklWd~~  356 (356)
T 2w18_A          345 QKDGNIFVYHYS  356 (356)
T ss_dssp             CTTSCEEEEEEC
T ss_pred             ECCCcEEEecCC
Confidence            999999999963

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=2.1e-35  Score=222.72  Aligned_cols=223  Identities=15%  Similarity=0.224  Sum_probs=179.8

Q ss_pred             CCcCCcccc-----ceeEEEeecCcceEEEEEeCCC-CEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeC
Q 040370            1 FFDFSKATA-----KRAFRVIQDTHNVRSVSFHPSG-DFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYS   74 (228)
Q Consensus         1 iwd~~~~~~-----~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~   74 (228)
                      |||+.....     .....+.+|...|.+++|+|++ .+|++++.|+.|++||+.+++....+.. ..| ...|.+++|+
T Consensus       108 vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~-~~~v~~~~~~  185 (402)
T 2aq5_A          108 VWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGP-DVH-PDTIYSVDWS  185 (402)
T ss_dssp             EEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECT-TTC-CSCEEEEEEC
T ss_pred             EEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEec-CCC-CCceEEEEEC
Confidence            477765532     4456677899999999999998 6999999999999999999987766521 112 7889999999


Q ss_pred             CCCCeEEEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEe---eCCCeEEEEEccCCeeEEEEecce
Q 040370           75 STGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSC---GKDSTVKLWEVSSGRLVKQYLGAT  151 (228)
Q Consensus        75 ~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~---~~d~~i~~wd~~~~~~~~~~~~~~  151 (228)
                      |++++|++++.||.|++||+++++.+..+...+....+.++.|+|+++++++|   +.|+.|++||+++++.........
T Consensus       186 ~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~  265 (402)
T 2aq5_A          186 RDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELD  265 (402)
T ss_dssp             TTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECC
T ss_pred             CCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEecc
Confidence            99999999999999999999999988888433334458899999999999999   799999999999876522222222


Q ss_pred             eeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcce-eEEee-cCCCCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370          152 HTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEK-VAKWS-SNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEI  227 (228)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~-~~~~~-~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~  227 (228)
                      +...+..+.|+|++.+++++++.|+.|++||+.+++. +..+. ..|..++.+++|+|++.++++  .++.+++|++.
T Consensus       266 ~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~  341 (402)
T 2aq5_A          266 TSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN--KCEIARFYKLH  341 (402)
T ss_dssp             CCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG--GTEEEEEEEEE
T ss_pred             CCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEeccccccee--cceeEEEEEcC
Confidence            5566889999999999988887789999999998874 33321 236789999999999998775  46699999963

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=100.00  E-value=6.6e-35  Score=221.86  Aligned_cols=207  Identities=18%  Similarity=0.259  Sum_probs=170.6

Q ss_pred             eEEEeecCcceEEEEEeCC-CCEEEEecCCCeEEEEEccc----------ceEEeeeccceeeeccceeeEEeCCCCC-e
Q 040370           12 AFRVIQDTHNVRSVSFHPS-GDFLLAGTDHPIAHLYDVNT----------FQCYLSANVPEISVNGAINQVRYSSTGG-M   79 (228)
Q Consensus        12 ~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~vw~~~~----------~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~   79 (228)
                      ......|.+.|++++|+|+ +.+|++++.+|.|++|++.+          ......+   .. |...|.+++|+|++. +
T Consensus       121 ~~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~---~~-h~~~v~~l~~~~~~~~~  196 (430)
T 2xyi_A          121 IEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRL---RG-HQKEGYGLSWNPNLNGY  196 (430)
T ss_dssp             EEEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEE---EC-CSSCCCCEEECTTSTTE
T ss_pred             EEEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEe---cC-CCCCeEEEEeCCCCCCe
Confidence            4556789999999999997 78999999999999999986          2222222   22 378899999999988 9


Q ss_pred             EEEEecCCeEEEEeCCCCce-------eeEEecccccceeEEEEECC-CCCEEEEeeCCCeEEEEEccCC---eeEEEEe
Q 040370           80 YVTASKDGAIRLWDGVSANC-------VRSIVGAHGTAEATSANFTK-DQRFVLSCGKDSTVKLWEVSSG---RLVKQYL  148 (228)
Q Consensus        80 l~~~~~dg~v~iwd~~~~~~-------~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~~wd~~~~---~~~~~~~  148 (228)
                      |++|+.||.|++||+.++..       ...+..|  ...|.+++|+| ++.+|++++.|+.|++||++++   +.+..+.
T Consensus       197 l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h--~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~  274 (430)
T 2xyi_A          197 LLSASDDHTICLWDINATPKEHRVIDAKNIFTGH--TAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVD  274 (430)
T ss_dssp             EEEECTTSCEEEEETTSCCBGGGEEECSEEECCC--SSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEE
T ss_pred             EEEEeCCCeEEEEeCCCCCCCCceeccceeecCC--CCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEee
Confidence            99999999999999987432       2334333  77899999999 7789999999999999999987   4555555


Q ss_pred             cceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCc-ceeEEeecCCCCCcEEEEeCCCCc-EEEEecCCCCEEEeee
Q 040370          149 GATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTA-EKVAKWSSNHIGAPRWIEHSPAEA-AFITCGTDRSVRFWKE  226 (228)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~dg~i~vwd~  226 (228)
                      .  +...+.++.|+|++.+++++++.||.|++||+++. ..+..+ ..|...|.+++|+|+++ +|++++.||.|++||+
T Consensus       275 ~--~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~-~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~  351 (430)
T 2xyi_A          275 A--HTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSF-ESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL  351 (430)
T ss_dssp             C--CSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEE-ECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEG
T ss_pred             c--CCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEe-ecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeC
Confidence            4  67788999999999976666777999999999984 445555 68999999999999885 7999999999999997


Q ss_pred             c
Q 040370          227 I  227 (228)
Q Consensus       227 ~  227 (228)
                      .
T Consensus       352 ~  352 (430)
T 2xyi_A          352 S  352 (430)
T ss_dssp             G
T ss_pred             C
Confidence            4

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=6.6e-35  Score=222.56  Aligned_cols=212  Identities=14%  Similarity=0.174  Sum_probs=166.6

Q ss_pred             eEEEeecC------------cceEEEEEeCCC--CEEEEecCCCeEEEEEcccceEEee---------------------
Q 040370           12 AFRVIQDT------------HNVRSVSFHPSG--DFLLAGTDHPIAHLYDVNTFQCYLS---------------------   56 (228)
Q Consensus        12 ~~~~~~~~------------~~v~~~~~~~~~--~~l~~~~~d~~i~vw~~~~~~~~~~---------------------   56 (228)
                      ...+.+|.            ..|++++|+|++  .+|++++.|+.|++||+.+++....                     
T Consensus        74 ~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  153 (447)
T 3dw8_B           74 YSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLR  153 (447)
T ss_dssp             EEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCC
T ss_pred             ecccccccccccccccccccCceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceE
Confidence            44556787            889999999998  7999999999999999987554211                     


Q ss_pred             ---------------eccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCCC-ceeeEE-----ecccccceeEEE
Q 040370           57 ---------------ANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSA-NCVRSI-----VGAHGTAEATSA  115 (228)
Q Consensus        57 ---------------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~-~~~~~~-----~~~~~~~~i~~~  115 (228)
                                     .......|...|.+++|+|++++|++| .|+.|++||+++. +....+     ....+...|.++
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~  232 (447)
T 3dw8_B          154 VPVFRPMDLMVEASPRRIFANAHTYHINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAA  232 (447)
T ss_dssp             CCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEE
T ss_pred             eccccchheeeeccceEEeccCCCcceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEE
Confidence                           001112248899999999999999998 7999999999844 333322     122237789999


Q ss_pred             EECCCC-CEEEEeeCCCeEEEEEccCCee----EEEEecceee----------eeeeEEEECCCCcEEEEeeCCCCeEEE
Q 040370          116 NFTKDQ-RFVLSCGKDSTVKLWEVSSGRL----VKQYLGATHT----------QLRFQAVFNDTEEFVLSIDEPSNEIVI  180 (228)
Q Consensus       116 ~~~~~~-~~l~~~~~d~~i~~wd~~~~~~----~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~d~~i~i  180 (228)
                      +|+|++ ++|++|+.|+.|++||+++++.    ...+..+...          ..+.++.|+|++.++++++.  +.|++
T Consensus       233 ~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~--~~v~i  310 (447)
T 3dw8_B          233 EFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY--LSVKV  310 (447)
T ss_dssp             EECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES--SEEEE
T ss_pred             EECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC--CeEEE
Confidence            999998 9999999999999999998876    5666553210          27899999999999887654  99999


Q ss_pred             EEcCC-cceeEEeecCCCCC---------------cEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370          181 WDALT-AEKVAKWSSNHIGA---------------PRWIEHSPAEAAFITCGTDRSVRFWKEI  227 (228)
Q Consensus       181 ~d~~~-~~~~~~~~~~~~~~---------------v~~~~~~~~~~~l~s~~~dg~i~vwd~~  227 (228)
                      ||+++ ++.+..+ .+|...               +..++|+|++++|++++.||.|++||+.
T Consensus       311 wd~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~  372 (447)
T 3dw8_B          311 WDLNMENRPVETY-QVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRN  372 (447)
T ss_dssp             EETTCCSSCSCCE-ESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETT
T ss_pred             EeCCCCcccccee-eccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcC
Confidence            99997 7776666 566532               2348999999999999999999999964

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=1.6e-34  Score=214.89  Aligned_cols=218  Identities=11%  Similarity=0.102  Sum_probs=173.4

Q ss_pred             CCcCCccccceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEe--CCCCC
Q 040370            1 FFDFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRY--SSTGG   78 (228)
Q Consensus         1 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~   78 (228)
                      |||+..........+.+|...|++++|+|++++|++++.||.|++||+++++.....     .|...|.+++|  +|+++
T Consensus        68 iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~-----~~~~~v~~~~~~~~~~~~  142 (368)
T 3mmy_A           68 CWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIA-----QHDAPVKTIHWIKAPNYS  142 (368)
T ss_dssp             EEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE-----ECSSCEEEEEEEECSSCE
T ss_pred             EEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCceeec-----cccCceEEEEEEeCCCCC
Confidence            577775333444566789999999999999999999999999999999998865532     23889999999  89999


Q ss_pred             eEEEEecCCeEEEEeCCCCceeeEEecccc---------------------------------------cceeEEEEECC
Q 040370           79 MYVTASKDGAIRLWDGVSANCVRSIVGAHG---------------------------------------TAEATSANFTK  119 (228)
Q Consensus        79 ~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~---------------------------------------~~~i~~~~~~~  119 (228)
                      +|++++.||.|++||+++++.+..+..+..                                       .....++.+.+
T Consensus       143 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (368)
T 3mmy_A          143 CVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFK  222 (368)
T ss_dssp             EEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEE
T ss_pred             EEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcc
Confidence            999999999999999998887766654310                                       12233444443


Q ss_pred             CCCE----EEEeeCCCeEEEEEccCC---eeEEEEeccee----------eeeeeEEEECCCCcEEEEeeCCCCeEEEEE
Q 040370          120 DQRF----VLSCGKDSTVKLWEVSSG---RLVKQYLGATH----------TQLRFQAVFNDTEEFVLSIDEPSNEIVIWD  182 (228)
Q Consensus       120 ~~~~----l~~~~~d~~i~~wd~~~~---~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d  182 (228)
                      +...    +++++.|+.|++||++..   +....+..+..          ...+.++.|+|++.++++++. ||.|++||
T Consensus       223 ~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~-dg~i~iwd  301 (368)
T 3mmy_A          223 DKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGS-DGRFSFWD  301 (368)
T ss_dssp             CTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEET-TSCEEEEE
T ss_pred             cCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEcc-CCeEEEEE
Confidence            3333    999999999999999876   44555555321          126899999999999888766 79999999


Q ss_pred             cCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEee
Q 040370          183 ALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWK  225 (228)
Q Consensus       183 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd  225 (228)
                      +++++.+..+ ..|..+|.+++|+|++++|++++.|+..+.|+
T Consensus       302 ~~~~~~~~~~-~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~  343 (368)
T 3mmy_A          302 KDARTKLKTS-EQLDQPISACCFNHNGNIFAYASSYDWSKGHE  343 (368)
T ss_dssp             TTTTEEEEEC-CCCSSCEEEEEECTTSSCEEEEECCCSTTCGG
T ss_pred             CCCCcEEEEe-cCCCCCceEEEECCCCCeEEEEeccccccccc
Confidence            9999988887 68999999999999999999999988655554

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=2e-34  Score=219.86  Aligned_cols=202  Identities=17%  Similarity=0.232  Sum_probs=160.4

Q ss_pred             ecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceE-----------Eeeeccceeeec------------cceeeEEe
Q 040370           17 QDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQC-----------YLSANVPEISVN------------GAINQVRY   73 (228)
Q Consensus        17 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~-----------~~~~~~~~~~~~------------~~i~~~~~   73 (228)
                      .+.+.|++++|+|++++||+|+.||.|+||++.+++.           ...+.   .| .            ..|++++|
T Consensus        26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~---~h-~~~~~~~~~~~~~~~V~~l~~  101 (447)
T 3dw8_B           26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQ---SH-EPEFDYLKSLEIEEKINKIRW  101 (447)
T ss_dssp             CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEE---CC-CCEEEGGGTEEECCCCCEEEE
T ss_pred             cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccc---cc-cccccccccccccCceEEEEE
Confidence            4678999999999999999999999999999987662           22222   22 4            78999999


Q ss_pred             CCCC--CeEEEEecCCeEEEEeCCCCcee---------------------------------------eEEeccccccee
Q 040370           74 SSTG--GMYVTASKDGAIRLWDGVSANCV---------------------------------------RSIVGAHGTAEA  112 (228)
Q Consensus        74 ~~~~--~~l~~~~~dg~v~iwd~~~~~~~---------------------------------------~~~~~~~~~~~i  112 (228)
                      +|++  ..|++++.|+.|++||+.+++..                                       ..+. ..+...|
T Consensus       102 ~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v  180 (447)
T 3dw8_B          102 LPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFA-NAHTYHI  180 (447)
T ss_dssp             CCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEEC-SCCSSCC
T ss_pred             cCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEec-cCCCcce
Confidence            9998  79999999999999998764432                                       1121 2237889


Q ss_pred             EEEEECCCCCEEEEeeCCCeEEEEEccCC-eeEEEE-----ecceeeeeeeEEEECCCC-cEEEEeeCCCCeEEEEEcCC
Q 040370          113 TSANFTKDQRFVLSCGKDSTVKLWEVSSG-RLVKQY-----LGATHTQLRFQAVFNDTE-EFVLSIDEPSNEIVIWDALT  185 (228)
Q Consensus       113 ~~~~~~~~~~~l~~~~~d~~i~~wd~~~~-~~~~~~-----~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~i~i~d~~~  185 (228)
                      .+++|+|++++|++| .|+.|++||+++. +....+     ....+...+.++.|+|++ .++++++. |+.|++||+++
T Consensus       181 ~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~-dg~i~iwd~~~  258 (447)
T 3dw8_B          181 NSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSS-KGTIRLCDMRA  258 (447)
T ss_dssp             CEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEET-TSCEEEEETTT
T ss_pred             EEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeC-CCeEEEEECcC
Confidence            999999999999998 7999999999843 333322     123367789999999998 66666554 89999999999


Q ss_pred             cce----eEEeecCCCC------------CcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370          186 AEK----VAKWSSNHIG------------APRWIEHSPAEAAFITCGTDRSVRFWKEI  227 (228)
Q Consensus       186 ~~~----~~~~~~~~~~------------~v~~~~~~~~~~~l~s~~~dg~i~vwd~~  227 (228)
                      ++.    ...+ ..|..            .|.+++|+|++++|++++. +.|++||+.
T Consensus       259 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~  314 (447)
T 3dw8_B          259 SALCDRHSKLF-EEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLN  314 (447)
T ss_dssp             CSSSCTTCEEE-CCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETT
T ss_pred             CccccceeeEe-ccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCC
Confidence            886    5555 56665            8999999999999999998 999999975

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=100.00  E-value=2.9e-35  Score=221.31  Aligned_cols=220  Identities=8%  Similarity=0.015  Sum_probs=155.7

Q ss_pred             CCcCCccccceeE---EEeecCcceEEEEEeC--------CCCEEEEecCCCeEEEEEcccceEEeeeccceeeecccee
Q 040370            1 FFDFSKATAKRAF---RVIQDTHNVRSVSFHP--------SGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAIN   69 (228)
Q Consensus         1 iwd~~~~~~~~~~---~~~~~~~~v~~~~~~~--------~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~   69 (228)
                      |||..........   .+.+|.+.|++++|+|        ++++||+|+.|++|+|||+.++........   + ...+.
T Consensus       115 lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~~~---~-~~~v~  190 (393)
T 4gq1_A          115 LIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAGYP---L-SSPGI  190 (393)
T ss_dssp             EEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEEEE---C-SSCEE
T ss_pred             EEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeeeecC---C-CCCcE
Confidence            4666544332221   1347999999999998        789999999999999999988776544432   2 78899


Q ss_pred             eEEeCCCC-CeEEEEecCCeEEEEeCCCCceeeEEec-----------------------ccccceeEEEEEC-CCCCEE
Q 040370           70 QVRYSSTG-GMYVTASKDGAIRLWDGVSANCVRSIVG-----------------------AHGTAEATSANFT-KDQRFV  124 (228)
Q Consensus        70 ~~~~~~~~-~~l~~~~~dg~v~iwd~~~~~~~~~~~~-----------------------~~~~~~i~~~~~~-~~~~~l  124 (228)
                      +++|+|++ ++|++|+.||+|++||+++++.......                       ..+...+.++.|. |+++.+
T Consensus       191 ~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l  270 (393)
T 4gq1_A          191 SVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGI  270 (393)
T ss_dssp             EEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEE
T ss_pred             EEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEE
Confidence            99999987 4899999999999999988765433211                       1124567788876 799999


Q ss_pred             EEeeCCCeEEEEEccCCeeEEEEeccee-----------------eeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcc
Q 040370          125 LSCGKDSTVKLWEVSSGRLVKQYLGATH-----------------TQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAE  187 (228)
Q Consensus       125 ~~~~~d~~i~~wd~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~  187 (228)
                      ++++.|+++++||+..++....+..+..                 ........+.+.+..++++++.|+.|++||..+++
T Consensus       271 ~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~  350 (393)
T 4gq1_A          271 LAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKD  350 (393)
T ss_dssp             EEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTT
T ss_pred             EEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCc
Confidence            9999999999999987765554432110                 11112223334456677778889999999999998


Q ss_pred             eeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeee
Q 040370          188 KVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKE  226 (228)
Q Consensus       188 ~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~  226 (228)
                      ..... ..|..+|.+++|+|+|++||+++.|| +.+|++
T Consensus       351 ~~~~~-~~~~~~V~svafspdG~~LA~as~~G-v~lvrL  387 (393)
T 4gq1_A          351 SNSIP-IQLGMPIVDFCWHQDGSHLAIATEGS-VLLTRL  387 (393)
T ss_dssp             CCEEE-EECSSCEEEEEECTTSSEEEEEESSE-EEEEEE
T ss_pred             EEEEe-cCCCCcEEEEEEcCCCCEEEEEeCCC-eEEEEE
Confidence            88776 57888999999999999999998776 666665

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=4.8e-34  Score=218.97  Aligned_cols=210  Identities=18%  Similarity=0.326  Sum_probs=177.7

Q ss_pred             CCcCCccccceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeC--CCCC
Q 040370            1 FFDFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYS--STGG   78 (228)
Q Consensus         1 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~   78 (228)
                      +||+...  +....+.+|...|.+++|+|++ +|++|+.||.|++||+++++....+..   | ...|.+++|+  ++++
T Consensus       146 vwd~~~~--~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~---h-~~~v~~l~~~~~~~~~  218 (464)
T 3v7d_B          146 VYDSINK--KFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEG---H-NSTVRCLDIVEYKNIK  218 (464)
T ss_dssp             EEETTTT--EEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEEEECC---C-SSCEEEEEEEESSSCE
T ss_pred             EEECCCC--cEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEEECC---C-CCccEEEEEecCCCCC
Confidence            4776643  3455566899999999999988 999999999999999999987766543   2 7899999998  5778


Q ss_pred             eEEEEecCCeEEEEeCCCCcee-----------------------eEEecccccceeEEEEECCCCCEEEEeeCCCeEEE
Q 040370           79 MYVTASKDGAIRLWDGVSANCV-----------------------RSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKL  135 (228)
Q Consensus        79 ~l~~~~~dg~v~iwd~~~~~~~-----------------------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~  135 (228)
                      ++++|+.||.|++||++++...                       ..+..+  ...+.++  +++++++++++.|+.|++
T Consensus       219 ~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~--~~~~~~l~~~~~d~~i~v  294 (464)
T 3v7d_B          219 YIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGH--MASVRTV--SGHGNIVVSGSYDNTLIV  294 (464)
T ss_dssp             EEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCC--SSCEEEE--EEETTEEEEEETTSCEEE
T ss_pred             EEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCc--cceEEEE--cCCCCEEEEEeCCCeEEE
Confidence            9999999999999999876533                       223332  5566665  567899999999999999


Q ss_pred             EEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEe
Q 040370          136 WEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITC  215 (228)
Q Consensus       136 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~  215 (228)
                      ||+++++.+..+.+  +...+.++.++|++.++++++. |+.|++||+++++.+..+ .+|...|.+++|+  +.+|+++
T Consensus       295 wd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~sg~~-dg~i~vwd~~~~~~~~~~-~~h~~~v~~~~~~--~~~l~s~  368 (464)
T 3v7d_B          295 WDVAQMKCLYILSG--HTDRIYSTIYDHERKRCISASM-DTTIRIWDLENGELMYTL-QGHTALVGLLRLS--DKFLVSA  368 (464)
T ss_dssp             EETTTTEEEEEECC--CSSCEEEEEEETTTTEEEEEET-TSCEEEEETTTTEEEEEE-CCCSSCEEEEEEC--SSEEEEE
T ss_pred             EECCCCcEEEEecC--CCCCEEEEEEcCCCCEEEEEeC-CCcEEEEECCCCcEEEEE-eCCCCcEEEEEEc--CCEEEEE
Confidence            99999999888876  6778899999999999888666 899999999999998888 7899999999997  5799999


Q ss_pred             cCCCCEEEeeec
Q 040370          216 GTDRSVRFWKEI  227 (228)
Q Consensus       216 ~~dg~i~vwd~~  227 (228)
                      +.||.|++||+.
T Consensus       369 s~dg~v~vwd~~  380 (464)
T 3v7d_B          369 AADGSIRGWDAN  380 (464)
T ss_dssp             ETTSEEEEEETT
T ss_pred             eCCCcEEEEECC
Confidence            999999999974

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=5.1e-34  Score=212.13  Aligned_cols=210  Identities=19%  Similarity=0.276  Sum_probs=161.0

Q ss_pred             eeEEEeecCcceEEEEEeCC---CCEEEEecCCCeEEEEEccc-ceEEeeeccceeeeccceeeEEeCCCCCeEEEEecC
Q 040370           11 RAFRVIQDTHNVRSVSFHPS---GDFLLAGTDHPIAHLYDVNT-FQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKD   86 (228)
Q Consensus        11 ~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~d~~i~vw~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d   86 (228)
                      ....+.+|...|++++|+|+   +++|++|+.||.|++||+.+ +......  ... |...|.+++|+|++++|++++.|
T Consensus        31 ~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~--~~~-h~~~v~~~~~~~~~~~l~s~~~d  107 (368)
T 3mmy_A           31 DIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKA--QQM-HTGPVLDVCWSDDGSKVFTASCD  107 (368)
T ss_dssp             CEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEE--EEE-CSSCEEEEEECTTSSEEEEEETT
T ss_pred             eeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEE--ecc-ccCCEEEEEECcCCCEEEEEcCC
Confidence            33444589999999999998   69999999999999999987 4433111  122 38899999999999999999999


Q ss_pred             CeEEEEeCCCCceeeEEecccccceeEEEEE--CCCCCEEEEeeCCCeEEEEEccCCeeEEEEeccee------------
Q 040370           87 GAIRLWDGVSANCVRSIVGAHGTAEATSANF--TKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATH------------  152 (228)
Q Consensus        87 g~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~------------  152 (228)
                      |.|++||+++++..... .+  ...|.+++|  +|++++|++++.|+.|++||+++++.+..+..+..            
T Consensus       108 g~v~iwd~~~~~~~~~~-~~--~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (368)
T 3mmy_A          108 KTAKMWDLSSNQAIQIA-QH--DAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAV  184 (368)
T ss_dssp             SEEEEEETTTTEEEEEE-EC--SSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEETTEEE
T ss_pred             CcEEEEEcCCCCceeec-cc--cCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecCCeeE
Confidence            99999999988876643 33  778999999  89999999999999999999998877666553210            


Q ss_pred             ---------------------------eeeeeEEEECCCCc---EEEEeeCCCCeEEEEEcCCc---ceeEEeecCCCC-
Q 040370          153 ---------------------------TQLRFQAVFNDTEE---FVLSIDEPSNEIVIWDALTA---EKVAKWSSNHIG-  198 (228)
Q Consensus       153 ---------------------------~~~~~~~~~~~~~~---~~~~~~~~d~~i~i~d~~~~---~~~~~~~~~~~~-  198 (228)
                                                 ......+.+.+...   ..+++++.|+.|++||++..   .....+ ..|.. 
T Consensus       185 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~-~~~~~~  263 (368)
T 3mmy_A          185 VATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTF-KCHRSN  263 (368)
T ss_dssp             EEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEE-ECSEEC
T ss_pred             EEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceee-eeeecc
Confidence                                       00111222222221   22344555899999999887   344444 45554 


Q ss_pred             -----------CcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370          199 -----------APRWIEHSPAEAAFITCGTDRSVRFWKEI  227 (228)
Q Consensus       199 -----------~v~~~~~~~~~~~l~s~~~dg~i~vwd~~  227 (228)
                                 +|.+++|+|++++|++++.||.|++||+.
T Consensus       264 ~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~  303 (368)
T 3mmy_A          264 GTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKD  303 (368)
T ss_dssp             ----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETT
T ss_pred             cccccccccccceEEEEEecCCCEEEEEccCCeEEEEECC
Confidence                       79999999999999999999999999964

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=6.9e-34  Score=240.38  Aligned_cols=216  Identities=19%  Similarity=0.352  Sum_probs=186.5

Q ss_pred             CCcCCccccceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCC--CCC
Q 040370            1 FFDFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSS--TGG   78 (228)
Q Consensus         1 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~   78 (228)
                      |||+.+.  .....+.+|...|.+++|+|++++|++|+.|+.|++||+.+++....+..   | ...|.+++|+|  ++.
T Consensus       641 vw~~~~~--~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~---~-~~~v~~~~~~~~~~~~  714 (1249)
T 3sfz_A          641 VFKAETG--EKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDE---H-SEQVNCCHFTNKSNHL  714 (1249)
T ss_dssp             EEETTTC--CEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEEC---C-SSCEEEEEECSSSSCC
T ss_pred             EEECCCC--CEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcC---C-CCcEEEEEEecCCCce
Confidence            4777643  34556668999999999999999999999999999999999987766543   2 78999999999  556


Q ss_pred             eEEEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecc--------
Q 040370           79 MYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGA--------  150 (228)
Q Consensus        79 ~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~--------  150 (228)
                      .+++|+.||.|++||+++++....+..|  ...|.+++|+|+++++++++.||.|++||+++++....+...        
T Consensus       715 ~l~sg~~d~~v~vwd~~~~~~~~~~~~h--~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~  792 (1249)
T 3sfz_A          715 LLATGSNDFFLKLWDLNQKECRNTMFGH--TNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSED  792 (1249)
T ss_dssp             EEEEEETTSCEEEEETTSSSEEEEECCC--SSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC-----
T ss_pred             EEEEEeCCCeEEEEECCCcchhheecCC--CCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCC
Confidence            8999999999999999999998888876  778999999999999999999999999999887655443210        


Q ss_pred             ---------------------------------------------eeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCC
Q 040370          151 ---------------------------------------------THTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALT  185 (228)
Q Consensus       151 ---------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~  185 (228)
                                                                   .+...+..+.|+|++.++++++. |+.|++||+.+
T Consensus       793 ~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~-dg~v~vwd~~~  871 (1249)
T 3sfz_A          793 PPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALS-QYCVELWNIDS  871 (1249)
T ss_dssp             ---CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECS-SSCEEEEETTT
T ss_pred             ccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeC-CCeEEEEEcCC
Confidence                                                         23456678889999998888766 79999999999


Q ss_pred             cceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeee
Q 040370          186 AEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKE  226 (228)
Q Consensus       186 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~  226 (228)
                      +.....+ .+|...|.+++|+|++++|++++.||.|++||+
T Consensus       872 ~~~~~~~-~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~  911 (1249)
T 3sfz_A          872 RLKVADC-RGHLSWVHGVMFSPDGSSFLTASDDQTIRVWET  911 (1249)
T ss_dssp             TEEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSCEEEEEH
T ss_pred             Cceeeec-CCCccceEEEEECCCCCEEEEEeCCCeEEEEEc
Confidence            9888887 799999999999999999999999999999985

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=1.5e-34  Score=213.30  Aligned_cols=216  Identities=13%  Similarity=0.069  Sum_probs=173.8

Q ss_pred             CCcCCcccc-ceeEEEeecCcceEEEEEeCCCC-EEEEecCCCeEEEEEc-ccceEEeeeccceeeeccceeeEEeCCCC
Q 040370            1 FFDFSKATA-KRAFRVIQDTHNVRSVSFHPSGD-FLLAGTDHPIAHLYDV-NTFQCYLSANVPEISVNGAINQVRYSSTG   77 (228)
Q Consensus         1 iwd~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~vw~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~   77 (228)
                      |||+..... ........|...|.+++|+|+++ +|++|+.||.|++||+ .+++.. .+..  ..|...|.+++|+| +
T Consensus        37 iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~-~~~~--~~~~~~v~~l~~~~-~  112 (342)
T 1yfq_A           37 VYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQ-ALTN--NEANLGICRICKYG-D  112 (342)
T ss_dssp             EEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEE-ECBS--CCCCSCEEEEEEET-T
T ss_pred             EEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCceE-eccc--cCCCCceEEEEeCC-C
Confidence            466665441 23455568999999999999999 9999999999999999 877652 2211  01388999999999 9


Q ss_pred             CeEEEEecCCeEEEEeCCC---------CceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccC-CeeEEEE
Q 040370           78 GMYVTASKDGAIRLWDGVS---------ANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSS-GRLVKQY  147 (228)
Q Consensus        78 ~~l~~~~~dg~v~iwd~~~---------~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~-~~~~~~~  147 (228)
                      +.+++++.|+.|++||+++         ++.+..+.   +...+.+++|+|++  +++++.|+.|++||+++ +......
T Consensus       113 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~---~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~  187 (342)
T 1yfq_A          113 DKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK---VKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTI  187 (342)
T ss_dssp             TEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS---SCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCCCEE
T ss_pred             CEEEEEcCCCeEEEEcccccccccccccCCeeeEEe---eCCceEEEEecCCc--EEEEeCCCeEEEEECCcccccccee
Confidence            9999999999999999987         66555554   27789999999887  99999999999999988 5543222


Q ss_pred             ecceeeeeeeEEEECC-CCcEEEEeeCCCCeEEEEEcCCc------ceeEEeecCCCC---------CcEEEEeCCCCcE
Q 040370          148 LGATHTQLRFQAVFND-TEEFVLSIDEPSNEIVIWDALTA------EKVAKWSSNHIG---------APRWIEHSPAEAA  211 (228)
Q Consensus       148 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~~i~i~d~~~~------~~~~~~~~~~~~---------~v~~~~~~~~~~~  211 (228)
                      ....+...+.++.|+| ++.++++++. ||.|++|+++..      +....+ ..|..         .|.+++|+|++++
T Consensus       188 ~~~~~~~~i~~i~~~~~~~~~l~~~~~-dg~i~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~s~~~~~  265 (342)
T 1yfq_A          188 EESGLKYQIRDVALLPKEQEGYACSSI-DGRVAVEFFDDQGDDYNSSKRFAF-RCHRLNLKDTNLAYPVNSIEFSPRHKF  265 (342)
T ss_dssp             EECSCSSCEEEEEECSGGGCEEEEEET-TSEEEEEECCTTCCSTTCTTCEEE-ECCCCCTTCCSSCCCEEEEEECTTTCC
T ss_pred             eecCCCCceeEEEECCCCCCEEEEEec-CCcEEEEEEcCCCcccccccceee-ecccccccccccceeEEEEEEcCCCCE
Confidence            2233566788999999 9988888766 899999999887      555555 45544         9999999999999


Q ss_pred             EEEecCCCCEEEeeec
Q 040370          212 FITCGTDRSVRFWKEI  227 (228)
Q Consensus       212 l~s~~~dg~i~vwd~~  227 (228)
                      |++++.||.|++||+.
T Consensus       266 l~~~~~dg~i~vwd~~  281 (342)
T 1yfq_A          266 LYTAGSDGIISCWNLQ  281 (342)
T ss_dssp             EEEEETTSCEEEEETT
T ss_pred             EEEecCCceEEEEcCc
Confidence            9999999999999974

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=1.8e-33  Score=237.83  Aligned_cols=208  Identities=17%  Similarity=0.315  Sum_probs=183.1

Q ss_pred             eeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEE
Q 040370           11 RAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIR   90 (228)
Q Consensus        11 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~   90 (228)
                      ....+.+|...|++++|+|+++++++|+.||.|++||+.+++....+..   | ...|.+++|+|+++++++++.||.|+
T Consensus       607 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~---h-~~~v~~~~~s~~~~~l~s~~~d~~v~  682 (1249)
T 3sfz_A          607 SRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKA---H-EDEVLCCAFSSDDSYIATCSADKKVK  682 (1249)
T ss_dssp             CSEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECC---C-SSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred             ceEEEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEecc---C-CCCEEEEEEecCCCEEEEEeCCCeEE
Confidence            4456678999999999999999999999999999999999987766652   3 88999999999999999999999999


Q ss_pred             EEeCCCCceeeEEecccccceeEEEEECC--CCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEE
Q 040370           91 LWDGVSANCVRSIVGAHGTAEATSANFTK--DQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFV  168 (228)
Q Consensus        91 iwd~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (228)
                      +||+.+++.+..+..|  ...|.+++|+|  ++.++++|+.|+.|++||+++++....+.+  |...+.++.|+|++.++
T Consensus       683 vwd~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~--h~~~v~~~~~sp~~~~l  758 (1249)
T 3sfz_A          683 IWDSATGKLVHTYDEH--SEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFG--HTNSVNHCRFSPDDELL  758 (1249)
T ss_dssp             EEETTTCCEEEEEECC--SSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECC--CSSCEEEEEECSSTTEE
T ss_pred             EEECCCCceEEEEcCC--CCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecC--CCCCEEEEEEecCCCEE
Confidence            9999999999998876  77999999999  556899999999999999999998888876  67789999999999998


Q ss_pred             EEeeCCCCeEEEEEcCCcceeEEe------------------------------------------------------ec
Q 040370          169 LSIDEPSNEIVIWDALTAEKVAKW------------------------------------------------------SS  194 (228)
Q Consensus       169 ~~~~~~d~~i~i~d~~~~~~~~~~------------------------------------------------------~~  194 (228)
                      ++++. ||.|++||+++++....+                                                      ..
T Consensus       759 ~s~s~-dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~  837 (1249)
T 3sfz_A          759 ASCSA-DGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHT  837 (1249)
T ss_dssp             EEEES-SSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEEC
T ss_pred             EEEEC-CCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcC
Confidence            88766 799999998876543322                                                      12


Q ss_pred             CCCCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370          195 NHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEI  227 (228)
Q Consensus       195 ~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~  227 (228)
                      +|...+.+++|+|++.++++++.||.|++||+.
T Consensus       838 ~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~  870 (1249)
T 3sfz_A          838 GHHSTIQYCDFSPYDHLAVIALSQYCVELWNID  870 (1249)
T ss_dssp             SSSSCCCEEEECSSTTEEEEECSSSCEEEEETT
T ss_pred             CCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcC
Confidence            678889999999999999999999999999863

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=1.2e-33  Score=223.31  Aligned_cols=215  Identities=15%  Similarity=0.293  Sum_probs=182.7

Q ss_pred             CCcCCccc--cceeEEEeecCcc-eEEEEEeC--CCCEEEEecCCCeEEEEEcccc--------eEEeeeccceeeeccc
Q 040370            1 FFDFSKAT--AKRAFRVIQDTHN-VRSVSFHP--SGDFLLAGTDHPIAHLYDVNTF--------QCYLSANVPEISVNGA   67 (228)
Q Consensus         1 iwd~~~~~--~~~~~~~~~~~~~-v~~~~~~~--~~~~l~~~~~d~~i~vw~~~~~--------~~~~~~~~~~~~~~~~   67 (228)
                      |||+..+.  ......+.+|... |++++|+|  ++++|++|+.||.|++||+.++        +....+.   . |...
T Consensus        43 v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~---~-~~~~  118 (615)
T 1pgu_A           43 VRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQ---V-LAGP  118 (615)
T ss_dssp             EEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEE---C-CSSC
T ss_pred             EEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhh---c-cccc
Confidence            47776431  1456667789999 99999999  9999999999999999999765        2222222   2 3788


Q ss_pred             eeeEEeCCCCCeEEEEecC----CeEEEEeCCCCceeeEEecccccceeEEEEECCCCC-EEEEeeCCCeEEEEEccCCe
Q 040370           68 INQVRYSSTGGMYVTASKD----GAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQR-FVLSCGKDSTVKLWEVSSGR  142 (228)
Q Consensus        68 i~~~~~~~~~~~l~~~~~d----g~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~~wd~~~~~  142 (228)
                      |.+++|+|+++++++++.+    +.|++||  .++....+..+  ...|.+++|+|+++ .+++++.|+.|++||+++++
T Consensus       119 v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~--~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~  194 (615)
T 1pgu_A          119 ISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSGH--SQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFK  194 (615)
T ss_dssp             EEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEEECCSC--SSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBE
T ss_pred             EEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCcceeeecC--CccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcc
Confidence            9999999999999999988    7899998  56667777665  77999999999998 89999999999999999999


Q ss_pred             eEEEEecceeee---eeeEEEECCC-CcEEEEeeCCCCeEEEEEcCCcceeEEeec---CCCCCcEEEEeCCCCcEEEEe
Q 040370          143 LVKQYLGATHTQ---LRFQAVFNDT-EEFVLSIDEPSNEIVIWDALTAEKVAKWSS---NHIGAPRWIEHSPAEAAFITC  215 (228)
Q Consensus       143 ~~~~~~~~~~~~---~~~~~~~~~~-~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~s~  215 (228)
                      .+..+..  +..   .+.++.|+|+ +.++++++. |+.|++||+++++.+..+..   .|...|.+++|+ ++++|+++
T Consensus       195 ~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~  270 (615)
T 1pgu_A          195 FSASDRT--HHKQGSFVRDVEFSPDSGEFVITVGS-DRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATV  270 (615)
T ss_dssp             EEEEECS--SSCTTCCEEEEEECSTTCCEEEEEET-TCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEE
T ss_pred             eeeeecc--cCCCCceEEEEEECCCCCCEEEEEeC-CCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEE
Confidence            8888876  555   7899999999 888888666 79999999999998888744   899999999999 99999999


Q ss_pred             cCCCCEEEeeec
Q 040370          216 GTDRSVRFWKEI  227 (228)
Q Consensus       216 ~~dg~i~vwd~~  227 (228)
                      +.||.|++||+.
T Consensus       271 ~~d~~i~~wd~~  282 (615)
T 1pgu_A          271 GADATIRVWDVT  282 (615)
T ss_dssp             ETTSEEEEEETT
T ss_pred             cCCCcEEEEECC
Confidence            999999999974

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=100.00  E-value=1e-33  Score=210.20  Aligned_cols=201  Identities=11%  Similarity=0.136  Sum_probs=159.3

Q ss_pred             EEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeE-EEEecCCeEEEE
Q 040370           14 RVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMY-VTASKDGAIRLW   92 (228)
Q Consensus        14 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~dg~v~iw   92 (228)
                      ....|...|++++|+|++++|++|+.++ +++|++++++......      ...+..+++.++++.+ ++++.|+.|++|
T Consensus        14 ~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~d~~v~iW   86 (355)
T 3vu4_A           14 PENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQE------MRHLSKVRMLHRTNYVAFVTGVKEVVHIW   86 (355)
T ss_dssp             -----CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEE------CSCCCEEEECTTSSEEEEECSSTTEEEEE
T ss_pred             ccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeee------cCCeEEEEEcCCCCEEEEEECCccEEEEE
Confidence            4567999999999999999999998775 7899998876544322      2357888899888877 567788999999


Q ss_pred             eCCCCceeeEEecccccceeEEEEECCCC-----------------------------------CEEEE--eeCCCeEEE
Q 040370           93 DGVSANCVRSIVGAHGTAEATSANFTKDQ-----------------------------------RFVLS--CGKDSTVKL  135 (228)
Q Consensus        93 d~~~~~~~~~~~~~~~~~~i~~~~~~~~~-----------------------------------~~l~~--~~~d~~i~~  135 (228)
                      |+++++.+..+..   ...|.++.++++.                                   .+++.  |+.||.|++
T Consensus        87 d~~~~~~~~~~~~---~~~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~s~~~la~~sg~~~g~v~i  163 (355)
T 3vu4_A           87 DDVKKQDVSRIKV---DAPVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDIRFGGVCEFSNGLLVYSNEFNLGQIHI  163 (355)
T ss_dssp             ETTTTEEEEEEEC---SSCEEEEEECSSEEEEEETTEEEEEESSTTCCBSSCCEEEEEEEEEETTEEEEEESSCTTCEEE
T ss_pred             ECCCCcEEEEEEC---CCceEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEeccCCceEEEEccEEEEeCCCcCcEEEE
Confidence            9999988887763   4477777777642                                   23333  578889999


Q ss_pred             EEccCCe----------------eEEEEecceeeeeeeEEEECCCCcEEEEeeCCCCe-EEEEEcCCcceeEEeecC-CC
Q 040370          136 WEVSSGR----------------LVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNE-IVIWDALTAEKVAKWSSN-HI  197 (228)
Q Consensus       136 wd~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-i~i~d~~~~~~~~~~~~~-~~  197 (228)
                      ||+++++                .+..+.+  |...+.++.|+|++.++++++. |++ |++||+++++.+..+..+ |.
T Consensus       164 wd~~~~~~~~~~~~~~~~~~~~p~~~~~~~--h~~~v~~~~~s~~g~~l~s~s~-d~~~v~iwd~~~~~~~~~~~~g~h~  240 (355)
T 3vu4_A          164 TKLQSSGSATTQDQGVQQKAILGKGVLIKA--HTNPIKMVRLNRKSDMVATCSQ-DGTIIRVFKTEDGVLVREFRRGLDR  240 (355)
T ss_dssp             EECCC------------------CCEEECC--CSSCEEEEEECTTSSEEEEEET-TCSEEEEEETTTCCEEEEEECTTCC
T ss_pred             EECCCCCccccccccccccccCcccEEEEc--cCCceEEEEECCCCCEEEEEeC-CCCEEEEEECCCCcEEEEEEcCCCC
Confidence            9988754                1445554  7788999999999999888666 898 999999999999988545 99


Q ss_pred             CCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370          198 GAPRWIEHSPAEAAFITCGTDRSVRFWKEI  227 (228)
Q Consensus       198 ~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~  227 (228)
                      ..|.+++|+|++++|++++.|+.|++||+.
T Consensus       241 ~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~  270 (355)
T 3vu4_A          241 ADVVDMKWSTDGSKLAVVSDKWTLHVFEIF  270 (355)
T ss_dssp             SCEEEEEECTTSCEEEEEETTCEEEEEESS
T ss_pred             CcEEEEEECCCCCEEEEEECCCEEEEEEcc
Confidence            999999999999999999999999999974

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.9e-34  Score=213.26  Aligned_cols=215  Identities=13%  Similarity=0.100  Sum_probs=164.4

Q ss_pred             CCcCCccccceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeee------ccceeeeccceeeEEeC
Q 040370            1 FFDFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSA------NVPEISVNGAINQVRYS   74 (228)
Q Consensus         1 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~------~~~~~~~~~~i~~~~~~   74 (228)
                      |||+........+.    ...|.++.|+|+   +++++.|+.|++|+..........      ......|...|.+++|+
T Consensus        62 iwd~~~~~~~~~~~----~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  134 (343)
T 3lrv_A           62 FTQLKDSKTITTIT----TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGH  134 (343)
T ss_dssp             EEEESSSSCEEEEE----EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECC
T ss_pred             EEECCCCcEEEEEe----cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcC
Confidence            46666544333332    467888889888   999999999999987643221111      11111225789999999


Q ss_pred             C--CCCeEEEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeE-EEEecce
Q 040370           75 S--TGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLV-KQYLGAT  151 (228)
Q Consensus        75 ~--~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~-~~~~~~~  151 (228)
                      |  +++++++++.||.|++||+++++.......++ ...+.+++|+|++.+|++|+.|+.|++||+++++.+ ..+.. .
T Consensus       135 ~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~-~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~-~  212 (343)
T 3lrv_A          135 NEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKS-DVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPV-D  212 (343)
T ss_dssp             C---CCEEEEEETTCCEEEEESSSSCEEEEECCCS-SCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCC-C
T ss_pred             CCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCC-CCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEec-c
Confidence            9  99999999999999999999998866654443 567999999999999999999999999999998877 56654 2


Q ss_pred             eeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeec--CCCCCcE--EEEeCCCCcEEEEecC-CCCEEEeee
Q 040370          152 HTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSS--NHIGAPR--WIEHSPAEAAFITCGT-DRSVRFWKE  226 (228)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~--~~~~~v~--~~~~~~~~~~l~s~~~-dg~i~vwd~  226 (228)
                      |...+.++.|+|++.++++++  |+.|++||+++++....+..  .|...+.  +++|+|++++|++++. |+.|++|++
T Consensus       213 h~~~v~~l~fs~~g~~l~s~~--~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~  290 (343)
T 3lrv_A          213 EEAKIKEVKFADNGYWMVVEC--DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKF  290 (343)
T ss_dssp             TTSCEEEEEECTTSSEEEEEE--SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred             CCCCEEEEEEeCCCCEEEEEe--CCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEE
Confidence            567899999999999999877  35999999999877655421  2333443  6999999999999988 999999986

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.5e-34  Score=217.58  Aligned_cols=204  Identities=16%  Similarity=0.135  Sum_probs=169.7

Q ss_pred             CcceEEEEEeCCCCEEEEecCCCeEEEEEcccce---EEeeecccee---------------------------------
Q 040370           19 THNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQ---CYLSANVPEI---------------------------------   62 (228)
Q Consensus        19 ~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~---~~~~~~~~~~---------------------------------   62 (228)
                      ..++.+++|+|+|++|+++ .++.|++||+.+++   .+........                                 
T Consensus         4 ~~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (450)
T 2vdu_B            4 IHPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGD   82 (450)
T ss_dssp             ECCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC----------------------------------
T ss_pred             cccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCc
Confidence            3578999999999976666 47899999999887   4333221100                                 


Q ss_pred             -----------------eeccceeeEEeCCCCCeE-EEEecCCeEEEEeCC--CCceeeEEecccccceeEEEEECCCCC
Q 040370           63 -----------------SVNGAINQVRYSSTGGMY-VTASKDGAIRLWDGV--SANCVRSIVGAHGTAEATSANFTKDQR  122 (228)
Q Consensus        63 -----------------~~~~~i~~~~~~~~~~~l-~~~~~dg~v~iwd~~--~~~~~~~~~~~~~~~~i~~~~~~~~~~  122 (228)
                                       .|.+.|.+++|+|++++| ++|+.||.|++||+.  +++....+..+.+...+.+++|+|+++
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~  162 (450)
T 2vdu_B           83 SIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDT  162 (450)
T ss_dssp             -----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSS
T ss_pred             cccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCC
Confidence                             113369999999999986 899999999999999  888888877544467899999999999


Q ss_pred             EEEEeeCCCeEEEEEccCCeeEE----EEecceeeeeeeEEEECCC---CcEEEEeeCCCCeEEEEEcCCcceeEEeecC
Q 040370          123 FVLSCGKDSTVKLWEVSSGRLVK----QYLGATHTQLRFQAVFNDT---EEFVLSIDEPSNEIVIWDALTAEKVAKWSSN  195 (228)
Q Consensus       123 ~l~~~~~d~~i~~wd~~~~~~~~----~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~  195 (228)
                      +|++++.++.+++|++.+++...    .+.+  |...+.++.|+|+   +.++++++. |+.|++||+++++.+..+..+
T Consensus       163 ~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~--h~~~v~~~~~sp~~~~~~~l~s~~~-d~~i~vwd~~~~~~~~~~~~~  239 (450)
T 2vdu_B          163 TVIIADKFGDVYSIDINSIPEEKFTQEPILG--HVSMLTDVHLIKDSDGHQFIITSDR-DEHIKISHYPQCFIVDKWLFG  239 (450)
T ss_dssp             EEEEEETTSEEEEEETTSCCCSSCCCCCSEE--CSSCEEEEEEEECTTSCEEEEEEET-TSCEEEEEESCTTCEEEECCC
T ss_pred             EEEEEeCCCcEEEEecCCcccccccceeeec--ccCceEEEEEcCCCCCCcEEEEEcC-CCcEEEEECCCCceeeeeecC
Confidence            99999999999999998876543    4444  6678899999999   888877665 899999999999988886578


Q ss_pred             CCCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370          196 HIGAPRWIEHSPAEAAFITCGTDRSVRFWKEI  227 (228)
Q Consensus       196 ~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~  227 (228)
                      |...|.+++|+ ++++|++++.|+.|++||+.
T Consensus       240 h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~  270 (450)
T 2vdu_B          240 HKHFVSSICCG-KDYLLLSAGGDDKIFAWDWK  270 (450)
T ss_dssp             CSSCEEEEEEC-STTEEEEEESSSEEEEEETT
T ss_pred             CCCceEEEEEC-CCCEEEEEeCCCeEEEEECC
Confidence            99999999999 99999999999999999964

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.7e-33  Score=202.01  Aligned_cols=208  Identities=18%  Similarity=0.317  Sum_probs=172.2

Q ss_pred             CcCCccc-cceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCC-CCCe
Q 040370            2 FDFSKAT-AKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSS-TGGM   79 (228)
Q Consensus         2 wd~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~   79 (228)
                      |++.... .+....+.+|...|.+++|  +++++++++.|+.|++||  .++.......   + ...+.++.|+| +++.
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~---~-~~~v~~~~~~~~~~~~  157 (313)
T 3odt_A           86 VPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQA---H-NASVWDAKVVSFSENK  157 (313)
T ss_dssp             EETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEEC---C-SSCEEEEEEEETTTTE
T ss_pred             EEeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEeccc---C-CCceeEEEEccCCCCE
Confidence            5555433 2345566689999999999  578999999999999999  4444443332   2 78899999988 8999


Q ss_pred             EEEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEE
Q 040370           80 YVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQA  159 (228)
Q Consensus        80 l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~  159 (228)
                      +++++.||.|++||  ..+....+...+ ...+.+++|+|++. +++++.|+.|++||+++++.+..+..  +...+..+
T Consensus       158 l~~~~~d~~i~i~d--~~~~~~~~~~~~-~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~i~~~  231 (313)
T 3odt_A          158 FLTASADKTIKLWQ--NDKVIKTFSGIH-NDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEG--HESFVYCI  231 (313)
T ss_dssp             EEEEETTSCEEEEE--TTEEEEEECSSC-SSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEEC--CSSCEEEE
T ss_pred             EEEEECCCCEEEEe--cCceEEEEeccC-cccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhc--CCceEEEE
Confidence            99999999999999  455566665533 77899999999988 99999999999999999999888876  67789999


Q ss_pred             EECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370          160 VFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEI  227 (228)
Q Consensus       160 ~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~  227 (228)
                      .|+|++ .+++++. |+.|++||+++++....+ ..|...|.+++|+|+++ +++++.||.|++||+.
T Consensus       232 ~~~~~~-~l~~~~~-dg~v~iwd~~~~~~~~~~-~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~  295 (313)
T 3odt_A          232 KLLPNG-DIVSCGE-DRTVRIWSKENGSLKQVI-TLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQE  295 (313)
T ss_dssp             EECTTS-CEEEEET-TSEEEEECTTTCCEEEEE-ECSSSCEEEEEECTTSC-EEEEETTSCEEEEESC
T ss_pred             EEecCC-CEEEEec-CCEEEEEECCCCceeEEE-eccCceEEEEEEccCCC-EEEEeCCCcEEEEeCC
Confidence            999999 4555444 899999999999988888 68889999999999998 6678999999999974

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8.3e-34  Score=216.44  Aligned_cols=212  Identities=10%  Similarity=0.057  Sum_probs=164.7

Q ss_pred             CcCCccccceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceee-eccceeeEEeCCCCCeE
Q 040370            2 FDFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEIS-VNGAINQVRYSSTGGMY   80 (228)
Q Consensus         2 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l   80 (228)
                      |++........+.+ .|...|.+++|+|+|++||+++.||.|++||.+.  ...... +..+ ....+.+++|||+|++|
T Consensus        69 ~~~~~~~~~~~~~~-~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~L  144 (588)
T 2j04_A           69 LDFELAQQNGLLNS-QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSI  144 (588)
T ss_dssp             TTTSCCCSSCSSTT-SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCE
T ss_pred             EEEEeCCCceEeec-CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEE
Confidence            56665444443332 5588999999999999999999999999999654  333222 1100 02359999999999999


Q ss_pred             EEEecCCeEEEEeCCCCce-------eeEEecc--cccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCee---EEEEe
Q 040370           81 VTASKDGAIRLWDGVSANC-------VRSIVGA--HGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRL---VKQYL  148 (228)
Q Consensus        81 ~~~~~dg~v~iwd~~~~~~-------~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~---~~~~~  148 (228)
                      ++|+.||+|++||+.++..       +..+..+  .|...|.+++|+|++  +++++.|+.|++||+..++.   ..++.
T Consensus       145 Asgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~  222 (588)
T 2j04_A          145 VVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQ  222 (588)
T ss_dssp             EEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEE
T ss_pred             EEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeec
Confidence            9999999999999998753       4555321  125799999999999  88899999999999987763   23453


Q ss_pred             cceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEe--CCCCcEEEEecCCCCEEEeee
Q 040370          149 GATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEH--SPAEAAFITCGTDRSVRFWKE  226 (228)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~s~~~dg~i~vwd~  226 (228)
                      . .|...+..++|+  +..+++++  ++.|++||+.+++..... .+|...+..++|  +|++..|+++++||. ++|..
T Consensus       223 ~-~h~~~V~svaFs--g~~LASa~--~~tIkLWd~~~~~~~~~~-~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~  295 (588)
T 2j04_A          223 N-ASRRKITDLKIV--DYKVVLTC--PGYVHKIDLKNYSISSLK-TGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLE  295 (588)
T ss_dssp             C-CCSSCCCCEEEE--TTEEEEEC--SSEEEEEETTTTEEEEEE-CSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEES
T ss_pred             c-cccCcEEEEEEE--CCEEEEEe--CCeEEEEECCCCeEEEEE-cCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEee
Confidence            2 256788899998  56777664  599999999887774443 479999999999  999999999999999 99975

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.2e-33  Score=203.07  Aligned_cols=211  Identities=18%  Similarity=0.303  Sum_probs=171.5

Q ss_pred             CCcCCccccceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeE
Q 040370            1 FFDFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMY   80 (228)
Q Consensus         1 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l   80 (228)
                      |||+...  .....+..|...|.+++|+|++++|++++.|+.|++|++..............| ...|.++.|  +++++
T Consensus        43 vw~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~--~~~~l  117 (313)
T 3odt_A           43 LWSKDDQ--WLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGH-QGNVCSLSF--QDGVV  117 (313)
T ss_dssp             EEEESSS--EEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCC-SSCEEEEEE--ETTEE
T ss_pred             EEECCCC--EEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhc-ccCEEEEEe--cCCEE
Confidence            4776533  344555678999999999999999999999999999998765322222222233 788999999  57799


Q ss_pred             EEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECC-CCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEE
Q 040370           81 VTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTK-DQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQA  159 (228)
Q Consensus        81 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~  159 (228)
                      ++++.||.|++||  .++....+..+  ...+.++.|.| +++++++++.|+.|++||.  .+....+... +...+..+
T Consensus       118 ~~~~~d~~i~~~d--~~~~~~~~~~~--~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~--~~~~~~~~~~-~~~~i~~~  190 (313)
T 3odt_A          118 ISGSWDKTAKVWK--EGSLVYNLQAH--NASVWDAKVVSFSENKFLTASADKTIKLWQN--DKVIKTFSGI-HNDVVRHL  190 (313)
T ss_dssp             EEEETTSEEEEEE--TTEEEEEEECC--SSCEEEEEEEETTTTEEEEEETTSCEEEEET--TEEEEEECSS-CSSCEEEE
T ss_pred             EEEeCCCCEEEEc--CCcEEEecccC--CCceeEEEEccCCCCEEEEEECCCCEEEEec--CceEEEEecc-CcccEEEE
Confidence            9999999999999  56667777665  77899999988 8999999999999999994  4555555432 56778899


Q ss_pred             EECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370          160 VFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEI  227 (228)
Q Consensus       160 ~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~  227 (228)
                      .++|++. +++++ .|+.|++||+++++.+..+ ..|...|.+++|+|++ .|++++.||.|++||+.
T Consensus       191 ~~~~~~~-~~~~~-~dg~i~i~d~~~~~~~~~~-~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~  254 (313)
T 3odt_A          191 AVVDDGH-FISCS-NDGLIKLVDMHTGDVLRTY-EGHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKE  254 (313)
T ss_dssp             EEEETTE-EEEEE-TTSEEEEEETTTCCEEEEE-ECCSSCEEEEEECTTS-CEEEEETTSEEEEECTT
T ss_pred             EEcCCCe-EEEcc-CCCeEEEEECCchhhhhhh-hcCCceEEEEEEecCC-CEEEEecCCEEEEEECC
Confidence            9999998 55544 4899999999999988888 6899999999999999 69999999999999964

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=9.6e-33  Score=211.74  Aligned_cols=202  Identities=18%  Similarity=0.376  Sum_probs=168.5

Q ss_pred             eeEEEeecCcce-EEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeE
Q 040370           11 RAFRVIQDTHNV-RSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAI   89 (228)
Q Consensus        11 ~~~~~~~~~~~v-~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v   89 (228)
                      ....+.+|...+ .++.+  ++++|++|+.||.|++||+.+++....+..   | .+.|.+++|+|++ .+++|+.||.|
T Consensus       113 ~~~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~---h-~~~V~~l~~~~~~-~l~s~s~dg~i  185 (464)
T 3v7d_B          113 QRTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSG---H-DGGVWALKYAHGG-ILVSGSTDRTV  185 (464)
T ss_dssp             EEEEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEEECC---C-SSCEEEEEECSTT-EEEEEETTSCE
T ss_pred             ceEEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEEEeC---C-CcCEEEEEEcCCC-EEEEEeCCCCE
Confidence            345667888875 66666  567999999999999999999987766652   3 8899999999987 89999999999


Q ss_pred             EEEeCCCCceeeEEecccccceeEEEEEC--CCCCEEEEeeCCCeEEEEEccCCeeEE----------------------
Q 040370           90 RLWDGVSANCVRSIVGAHGTAEATSANFT--KDQRFVLSCGKDSTVKLWEVSSGRLVK----------------------  145 (228)
Q Consensus        90 ~iwd~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~l~~~~~d~~i~~wd~~~~~~~~----------------------  145 (228)
                      ++||+++++....+..|  ...|.+++|+  ++++++++++.|+.|++||+++++...                      
T Consensus       186 ~vwd~~~~~~~~~~~~h--~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (464)
T 3v7d_B          186 RVWDIKKGCCTHVFEGH--NSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFV  263 (464)
T ss_dssp             EEEETTTTEEEEEECCC--SSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEE
T ss_pred             EEEECCCCcEEEEECCC--CCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEE
Confidence            99999999988888765  7789999988  578999999999999999998765432                      


Q ss_pred             -EEecceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEe
Q 040370          146 -QYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFW  224 (228)
Q Consensus       146 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vw  224 (228)
                       .+.+  +...+.++  ++++.++++++. |+.|++||+++++.+..+ .+|...|.+++|+|++++|++|+.||.|++|
T Consensus       264 ~~~~~--~~~~v~~~--~~~~~~l~~~~~-d~~i~vwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vw  337 (464)
T 3v7d_B          264 GVLRG--HMASVRTV--SGHGNIVVSGSY-DNTLIVWDVAQMKCLYIL-SGHTDRIYSTIYDHERKRCISASMDTTIRIW  337 (464)
T ss_dssp             EEECC--CSSCEEEE--EEETTEEEEEET-TSCEEEEETTTTEEEEEE-CCCSSCEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred             EEccC--ccceEEEE--cCCCCEEEEEeC-CCeEEEEECCCCcEEEEe-cCCCCCEEEEEEcCCCCEEEEEeCCCcEEEE
Confidence             2222  33334333  567788887666 899999999999988888 7899999999999999999999999999999


Q ss_pred             eec
Q 040370          225 KEI  227 (228)
Q Consensus       225 d~~  227 (228)
                      |+.
T Consensus       338 d~~  340 (464)
T 3v7d_B          338 DLE  340 (464)
T ss_dssp             ETT
T ss_pred             ECC
Confidence            974

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=1.5e-32  Score=209.24  Aligned_cols=204  Identities=23%  Similarity=0.407  Sum_probs=171.7

Q ss_pred             CCcCCccccceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeE
Q 040370            1 FFDFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMY   80 (228)
Q Consensus         1 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l   80 (228)
                      +||..+.  +....+.+|...|.+++|  ++++|++|+.||.|++||+.+++....+..   | ...|.+++|++  +.+
T Consensus       157 iwd~~~~--~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~---h-~~~v~~l~~~~--~~l  226 (435)
T 1p22_A          157 IWDKNTL--ECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIH---H-CEAVLHLRFNN--GMM  226 (435)
T ss_dssp             EEESSSC--CEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECC---C-CSCEEEEECCT--TEE
T ss_pred             EEeCCCC--eEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEEEcC---C-CCcEEEEEEcC--CEE
Confidence            4666543  344556689999999999  788999999999999999999987766543   2 78899999974  589


Q ss_pred             EEEecCCeEEEEeCCCCcee---eEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeee
Q 040370           81 VTASKDGAIRLWDGVSANCV---RSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRF  157 (228)
Q Consensus        81 ~~~~~dg~v~iwd~~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~  157 (228)
                      ++|+.||.|++||+++++..   ..+..+  ...|.+++|  +++++++|+.|+.|++||+++++.+..+..  +...+.
T Consensus       227 ~s~s~dg~i~vwd~~~~~~~~~~~~~~~~--~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~--~~~~v~  300 (435)
T 1p22_A          227 VTCSKDRSIAVWDMASPTDITLRRVLVGH--RAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNG--HKRGIA  300 (435)
T ss_dssp             EEEETTSCEEEEECSSSSCCEEEEEECCC--SSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEEEC--CSSCEE
T ss_pred             EEeeCCCcEEEEeCCCCCCceeeeEecCC--CCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcEEEEEcC--CCCcEE
Confidence            99999999999999988765   344443  778999998  688999999999999999999999988876  556677


Q ss_pred             EEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeee
Q 040370          158 QAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKE  226 (228)
Q Consensus       158 ~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~  226 (228)
                      ++.+  ++.++++++. |+.|++||+++++.+..+ .+|...|.+++|  ++.+|++|+.||.|++||+
T Consensus       301 ~~~~--~~~~l~~g~~-dg~i~iwd~~~~~~~~~~-~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~  363 (435)
T 1p22_A          301 CLQY--RDRLVVSGSS-DNTIRLWDIECGACLRVL-EGHEELVRCIRF--DNKRIVSGAYDGKIKVWDL  363 (435)
T ss_dssp             EEEE--ETTEEEEEET-TSCEEEEETTTCCEEEEE-CCCSSCEEEEEC--CSSEEEEEETTSCEEEEEH
T ss_pred             EEEe--CCCEEEEEeC-CCeEEEEECCCCCEEEEE-eCCcCcEEEEEe--cCCEEEEEeCCCcEEEEEC
Confidence            7777  4566766555 899999999999998888 789999999999  7889999999999999996

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=1.1e-33  Score=208.70  Aligned_cols=202  Identities=8%  Similarity=-0.004  Sum_probs=165.9

Q ss_pred             ecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCC-eEEEEecCCeEEEEeC-
Q 040370           17 QDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGG-MYVTASKDGAIRLWDG-   94 (228)
Q Consensus        17 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~v~iwd~-   94 (228)
                      +|.+.|++++|+|++++|++++.|+.|++|++.+++.......... |...|.+++|+|+++ +|++|+.||.|++||+ 
T Consensus         9 ~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~   87 (342)
T 1yfq_A            9 APKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLR-YKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLI   87 (342)
T ss_dssp             CCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEE-CSSCEEEEEEEESSSEEEEEEETTSCEEEECSS
T ss_pred             CCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeee-cCCceEEEEECCCCCcEEEEEcCCCeEEEEEec
Confidence            6999999999999999999999999999999988762111222223 388999999999999 9999999999999999 


Q ss_pred             CCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccC---------CeeEEEEecceeeeeeeEEEECCCC
Q 040370           95 VSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSS---------GRLVKQYLGATHTQLRFQAVFNDTE  165 (228)
Q Consensus        95 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~  165 (228)
                      ++++. ..+....+...|.+++|+| ++++++++.|+.|++||+++         ++.+..+.   +...+.++.++|++
T Consensus        88 ~~~~~-~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~---~~~~v~~~~~~~~~  162 (342)
T 1yfq_A           88 GSPSF-QALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK---VKNKIFTMDTNSSR  162 (342)
T ss_dssp             SSSSE-EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS---SCCCEEEEEECSSE
T ss_pred             cCCce-EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe---eCCceEEEEecCCc
Confidence            77754 4454411378999999999 99999999999999999987         65555544   56778899999887


Q ss_pred             cEEEEeeCCCCeEEEEEcCC-cce-eEEeecCCCCCcEEEEeCC-CCcEEEEecCCCCEEEeeec
Q 040370          166 EFVLSIDEPSNEIVIWDALT-AEK-VAKWSSNHIGAPRWIEHSP-AEAAFITCGTDRSVRFWKEI  227 (228)
Q Consensus       166 ~~~~~~~~~d~~i~i~d~~~-~~~-~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~vwd~~  227 (228)
                        ++++ +.|+.|++||+++ +.. .......|...+.+++|+| +++++++++.||.|++|++.
T Consensus       163 --l~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~  224 (342)
T 1yfq_A          163 --LIVG-MNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFD  224 (342)
T ss_dssp             --EEEE-ESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECC
T ss_pred             --EEEE-eCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEc
Confidence              5554 4479999999998 554 3333357888999999999 99999999999999999874

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.5e-32  Score=208.81  Aligned_cols=222  Identities=11%  Similarity=0.054  Sum_probs=175.7

Q ss_pred             CCcCC--ccccceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEe-eeccceeeeccceeeEEeCCC-
Q 040370            1 FFDFS--KATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYL-SANVPEISVNGAINQVRYSST-   76 (228)
Q Consensus         1 iwd~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~-   76 (228)
                      |||+.  .......+....|...|.+++|+|++++|++|+.+|.|++|++.+++... .......| ...|++++|+|+ 
T Consensus       129 iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~sp~~  207 (450)
T 2vdu_B          129 VFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGH-VSMLTDVHLIKDS  207 (450)
T ss_dssp             EEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEEC-SSCEEEEEEEECT
T ss_pred             EEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEecCCcccccccceeeecc-cCceEEEEEcCCC
Confidence            57776  44444444444778999999999999999999999999999998876543 22233334 889999999999 


Q ss_pred             --CCeEEEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecc----
Q 040370           77 --GGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGA----  150 (228)
Q Consensus        77 --~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~----  150 (228)
                        +++|++|+.|+.|++||+++++.+..+...+ ...|.+++|+ ++++|++++.|+.|++||+++++.+..+..+    
T Consensus       208 ~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h-~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~  285 (450)
T 2vdu_B          208 DGHQFIITSDRDEHIKISHYPQCFIVDKWLFGH-KHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIK  285 (450)
T ss_dssp             TSCEEEEEEETTSCEEEEEESCTTCEEEECCCC-SSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHG
T ss_pred             CCCcEEEEEcCCCcEEEEECCCCceeeeeecCC-CCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhh
Confidence              9999999999999999999998887754333 7799999999 9999999999999999999999988877532    


Q ss_pred             -------------------eeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEc--CCc---ceeEEeecCCCCCcEEEEeC
Q 040370          151 -------------------THTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDA--LTA---EKVAKWSSNHIGAPRWIEHS  206 (228)
Q Consensus       151 -------------------~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~--~~~---~~~~~~~~~~~~~v~~~~~~  206 (228)
                                         .....+..+.++|++.++++++..|+.|++|++  .++   +.+..+ ..| +.|.+++|+
T Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~-~~~-~~v~~~~~~  363 (450)
T 2vdu_B          286 PYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQII-TFP-YNVISLSAH  363 (450)
T ss_dssp             GGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEE-ECS-SCEEEEEEE
T ss_pred             hhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEe-ccC-CceEEEEec
Confidence                               123457788999999999998856899999999  555   445555 455 889999999


Q ss_pred             CCCcEEEEecC------CCCEEEeeec
Q 040370          207 PAEAAFITCGT------DRSVRFWKEI  227 (228)
Q Consensus       207 ~~~~~l~s~~~------dg~i~vwd~~  227 (228)
                      |++.++++++.      +..|.+|.+.
T Consensus       364 ~~~~~v~~~~~~~~~~~~~~i~v~~~~  390 (450)
T 2vdu_B          364 NDEFQVTLDNKESSGVQKNFAKFIEYN  390 (450)
T ss_dssp             TTEEEEEECCTTCCSSCCCSEEEEEEE
T ss_pred             CCcEEEEEecccCCCCCCcceEEEEEE
Confidence            96544444343      5568998753

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.8e-33  Score=206.30  Aligned_cols=198  Identities=9%  Similarity=0.055  Sum_probs=155.6

Q ss_pred             ecCcceEEEEEeC--CCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeC
Q 040370           17 QDTHNVRSVSFHP--SGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDG   94 (228)
Q Consensus        17 ~~~~~v~~~~~~~--~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~   94 (228)
                      +|..+|.+++|+|  +++++++|+.||.|++||+++++.......   ++...+.+++|+|++++|++|+.||.|++||+
T Consensus       123 ~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~---~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~  199 (343)
T 3lrv_A          123 DSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSA---KSDVEYSSGVLHKDSLLLALYSPDGILDVYNL  199 (343)
T ss_dssp             CCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECC---CSSCCCCEEEECTTSCEEEEECTTSCEEEEES
T ss_pred             CCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEec---CCCCceEEEEECCCCCEEEEEcCCCEEEEEEC
Confidence            5678999999999  999999999999999999999887544322   22567999999999999999999999999999


Q ss_pred             CCCcee-eEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecce-eeeee--eEEEECCCCcEEEE
Q 040370           95 VSANCV-RSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGAT-HTQLR--FQAVFNDTEEFVLS  170 (228)
Q Consensus        95 ~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~  170 (228)
                      ++++.. ..+...| ..+|.+++|+|++.+|++++. +.|++||+++++.+..+.... +...+  .+++|+|+++++++
T Consensus       200 ~~~~~~~~~~~~~h-~~~v~~l~fs~~g~~l~s~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~  277 (343)
T 3lrv_A          200 SSPDQASSRFPVDE-EAKIKEVKFADNGYWMVVECD-QTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIA  277 (343)
T ss_dssp             SCTTSCCEECCCCT-TSCEEEEEECTTSSEEEEEES-SBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEE
T ss_pred             CCCCCCccEEeccC-CCCEEEEEEeCCCCEEEEEeC-CeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEE
Confidence            999887 6676622 789999999999999999994 599999999887655443210 11112  46999999999999


Q ss_pred             eeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCC---CCcEEEEecCCCCEEEe
Q 040370          171 IDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSP---AEAAFITCGTDRSVRFW  224 (228)
Q Consensus       171 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~s~~~dg~i~vw  224 (228)
                      ++..|+.+++|++.+.......     .++..+.|.|   +...+++++.||.+.++
T Consensus       278 ~s~~d~~i~v~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~  329 (343)
T 3lrv_A          278 YSNESNSLTIYKFDKKTKNWTK-----DEESALCLQSDTADFTDMDVVCGDGGIAAI  329 (343)
T ss_dssp             EETTTTEEEEEEECTTTCSEEE-----EEEEECCC----CCCCEEEEEEETTEEEEE
T ss_pred             ecCCCCcEEEEEEcccccceEe-----cCceeEecCccccccceeEEEecCCceEEE
Confidence            7775799999999766543332     4567777877   77788888888887765

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=6.2e-33  Score=211.31  Aligned_cols=208  Identities=19%  Similarity=0.362  Sum_probs=172.3

Q ss_pred             CCcCCccccceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeE
Q 040370            1 FFDFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMY   80 (228)
Q Consensus         1 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l   80 (228)
                      +||+...  +....+.+|...|.+++|+  +..+++|+.||.|++||+.+++..........| ...|.+++|  +++++
T Consensus       197 vwd~~~~--~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~-~~~v~~~~~--~~~~l  269 (435)
T 1p22_A          197 VWDVNTG--EMLNTLIHHCEAVLHLRFN--NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGH-RAAVNVVDF--DDKYI  269 (435)
T ss_dssp             EEESSSC--CEEEEECCCCSCEEEEECC--TTEEEEEETTSCEEEEECSSSSCCEEEEEECCC-SSCEEEEEE--ETTEE
T ss_pred             EEECCCC--cEEEEEcCCCCcEEEEEEc--CCEEEEeeCCCcEEEEeCCCCCCceeeeEecCC-CCcEEEEEe--CCCEE
Confidence            4777644  3455566899999999996  459999999999999999987654333333333 788999999  68899


Q ss_pred             EEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEE
Q 040370           81 VTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAV  160 (228)
Q Consensus        81 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~  160 (228)
                      ++|+.||.|++||+++++.+..+..+  ...+.++.++  ++++++|+.||.|++||+++++.+..+.+  |...+.++.
T Consensus       270 ~s~~~dg~i~vwd~~~~~~~~~~~~~--~~~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~~~~~~~~~--h~~~v~~~~  343 (435)
T 1p22_A          270 VSASGDRTIKVWNTSTCEFVRTLNGH--KRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEG--HEELVRCIR  343 (435)
T ss_dssp             EEEETTSEEEEEETTTCCEEEEEECC--SSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECC--CSSCEEEEE
T ss_pred             EEEeCCCeEEEEECCcCcEEEEEcCC--CCcEEEEEeC--CCEEEEEeCCCeEEEEECCCCCEEEEEeC--CcCcEEEEE
Confidence            99999999999999999999988876  6788999884  68999999999999999999999988876  566777887


Q ss_pred             ECCCCcEEEEeeCCCCeEEEEEcCCcc---------eeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370          161 FNDTEEFVLSIDEPSNEIVIWDALTAE---------KVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEI  227 (228)
Q Consensus       161 ~~~~~~~~~~~~~~d~~i~i~d~~~~~---------~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~  227 (228)
                      +  ++.++++++. ||.|++||++++.         ....+ .+|.+.|.+++|  ++.+|++++.||.|++||+.
T Consensus       344 ~--~~~~l~sg~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~-~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~  413 (435)
T 1p22_A          344 F--DNKRIVSGAY-DGKIKVWDLVAALDPRAPAGTLCLRTL-VEHSGRVFRLQF--DEFQIVSSSHDDTILIWDFL  413 (435)
T ss_dssp             C--CSSEEEEEET-TSCEEEEEHHHHTSTTSCTTTTEEEEE-CCCSSCCCCEEE--CSSCEEECCSSSEEEEEC--
T ss_pred             e--cCCEEEEEeC-CCcEEEEECCCCCCccccccchheeec-cCCCCCeEEEEe--CCCEEEEEeCCCEEEEEECC
Confidence            7  6777777655 8999999998776         56666 789999999999  77889999999999999974

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=7.7e-33  Score=218.67  Aligned_cols=199  Identities=14%  Similarity=0.190  Sum_probs=171.1

Q ss_pred             ecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccc----eEEeeeccceeeeccc-eeeEEeCC--CCCeEEEEecCCeE
Q 040370           17 QDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTF----QCYLSANVPEISVNGA-INQVRYSS--TGGMYVTASKDGAI   89 (228)
Q Consensus        17 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~----~~~~~~~~~~~~~~~~-i~~~~~~~--~~~~l~~~~~dg~v   89 (228)
                      .|...|.+++|+|++++|++++ ++.|++|++.++    +....+..   | ... |++++|+|  ++++|++|+.||.|
T Consensus        16 ~~~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~~---h-~~~~v~~~~~sp~~~~~~l~s~~~dg~v   90 (615)
T 1pgu_A           16 TQRNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPPVVQFTG---H-GSSVVTTVKFSPIKGSQYLCSGDESGKV   90 (615)
T ss_dssp             CCTTCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCCSSCSEEEECT---T-TTSCEEEEEECSSTTCCEEEEEETTSEE
T ss_pred             CccCceeEEEECCCCCEEEEec-CCeEEEEECCCCCCccccceEEec---C-CCceEEEEEECcCCCCCEEEEecCCCEE
Confidence            5789999999999999999998 789999999987    55554433   2 778 99999999  99999999999999


Q ss_pred             EEEeCCCC--------ceeeEEecccccceeEEEEECCCCCEEEEeeCC----CeEEEEEccCCeeEEEEecceeeeeee
Q 040370           90 RLWDGVSA--------NCVRSIVGAHGTAEATSANFTKDQRFVLSCGKD----STVKLWEVSSGRLVKQYLGATHTQLRF  157 (228)
Q Consensus        90 ~iwd~~~~--------~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d----~~i~~wd~~~~~~~~~~~~~~~~~~~~  157 (228)
                      ++||+.++        +....+..+  ...|.+++|+|++++|++++.+    +.|++||  .++.+..+..  +...+.
T Consensus        91 ~vw~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~--~~~~v~  164 (615)
T 1pgu_A           91 IVWGWTFDKESNSVEVNVKSEFQVL--AGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSG--HSQRIN  164 (615)
T ss_dssp             EEEEEEEEGGGTEEEEEEEEEEECC--SSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEEECCS--CSSCEE
T ss_pred             EEEeCCCCcccccccccccchhhcc--cccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCcceeeec--CCccEE
Confidence            99999755        455555554  7789999999999999999988    6888888  5566666665  677899


Q ss_pred             EEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCC---CcEEEEeCCC-CcEEEEecCCCCEEEeeec
Q 040370          158 QAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIG---APRWIEHSPA-EAAFITCGTDRSVRFWKEI  227 (228)
Q Consensus       158 ~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~---~v~~~~~~~~-~~~l~s~~~dg~i~vwd~~  227 (228)
                      ++.|+|++++++++++.|+.|++||.++++....+ .+|..   .|.+++|+|+ +++|++++.||.|++||+.
T Consensus       165 ~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~  237 (615)
T 1pgu_A          165 ACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASD-RTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGK  237 (615)
T ss_dssp             EEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEE-CSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETT
T ss_pred             EEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeee-cccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECC
Confidence            99999999865555666899999999999988887 68888   9999999999 9999999999999999963

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=1.2e-31  Score=199.77  Aligned_cols=157  Identities=11%  Similarity=0.077  Sum_probs=127.4

Q ss_pred             ceeeEEeCCCCCeEEEE--ecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeE
Q 040370           67 AINQVRYSSTGGMYVTA--SKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLV  144 (228)
Q Consensus        67 ~i~~~~~~~~~~~l~~~--~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~  144 (228)
                      .+.+++|+|+|++++++  +.|++|++||+++++.+..+..   ...|.+++|+|+++++++++.+ .+.+|+..+++.+
T Consensus       135 ~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~~---~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~~~  210 (365)
T 4h5i_A          135 YTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIET---RGEVKDLHFSTDGKVVAYITGS-SLEVISTVTGSCI  210 (365)
T ss_dssp             CEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEEC---SSCCCEEEECTTSSEEEEECSS-CEEEEETTTCCEE
T ss_pred             CEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeCC---CCceEEEEEccCCceEEeccce-eEEEEEeccCcce
Confidence            36789999999987754  4789999999999998887753   5679999999999999999855 5777777777776


Q ss_pred             EEEecceeeeeeeEEEECCCCcEEEEeeCCCC---eEEEEEcCCcceeE---EeecCCCCCcEEEEeCCCCcEEEEecCC
Q 040370          145 KQYLGATHTQLRFQAVFNDTEEFVLSIDEPSN---EIVIWDALTAEKVA---KWSSNHIGAPRWIEHSPAEAAFITCGTD  218 (228)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~---~i~i~d~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~l~s~~~d  218 (228)
                      .......+...+..+.|+|++.++++++...+   .+++|++.......   ....+|..+|++++|+|++++||+|+.|
T Consensus       211 ~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D  290 (365)
T 4h5i_A          211 ARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASND  290 (365)
T ss_dssp             EEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETT
T ss_pred             eeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCC
Confidence            65544456778899999999999998766322   68889987665422   1225889999999999999999999999


Q ss_pred             CCEEEeeec
Q 040370          219 RSVRFWKEI  227 (228)
Q Consensus       219 g~i~vwd~~  227 (228)
                      +.|+|||+.
T Consensus       291 ~~V~iwd~~  299 (365)
T 4h5i_A          291 NSIALVKLK  299 (365)
T ss_dssp             SCEEEEETT
T ss_pred             CEEEEEECC
Confidence            999999964

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=6.8e-31  Score=200.56  Aligned_cols=210  Identities=20%  Similarity=0.381  Sum_probs=174.2

Q ss_pred             CCcCCccccceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeE
Q 040370            1 FFDFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMY   80 (228)
Q Consensus         1 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l   80 (228)
                      +||+...  +....+.+|...|.+++|  +++++++|+.||.|++||+.+++....+..   | ...|.++.|  +++++
T Consensus       223 ~wd~~~~--~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---~-~~~v~~~~~--~~~~l  292 (445)
T 2ovr_B          223 VWDIETG--QCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQG---H-TNRVYSLQF--DGIHV  292 (445)
T ss_dssp             EEESSSC--CEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEECC---C-SSCEEEEEE--CSSEE
T ss_pred             EEECCCC--cEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEecC---C-CCceEEEEE--CCCEE
Confidence            4666643  344555678999999998  788899999999999999998887766543   2 778999999  78899


Q ss_pred             EEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecce-eeeeeeEE
Q 040370           81 VTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGAT-HTQLRFQA  159 (228)
Q Consensus        81 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~-~~~~~~~~  159 (228)
                      ++|+.||.|++||+++++.+..+..+  ...+.++.++  ++++++++.||.|++||+++++.+..+..+. +...+.++
T Consensus       293 ~~~~~d~~i~i~d~~~~~~~~~~~~~--~~~v~~~~~~--~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~  368 (445)
T 2ovr_B          293 VSGSLDTSIRVWDVETGNCIHTLTGH--QSLTSGMELK--DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCL  368 (445)
T ss_dssp             EEEETTSCEEEEETTTCCEEEEECCC--CSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEE
T ss_pred             EEEeCCCeEEEEECCCCCEEEEEcCC--cccEEEEEEe--CCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEE
Confidence            99999999999999999998888765  6677777764  6799999999999999999999888886532 56677888


Q ss_pred             EECCCCcEEEEeeCCCCeEEEEEcCCcceeEEee----cCCCCCcEEEEeCCCCcEEEEecCCCC----EEEeeec
Q 040370          160 VFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWS----SNHIGAPRWIEHSPAEAAFITCGTDRS----VRFWKEI  227 (228)
Q Consensus       160 ~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~l~s~~~dg~----i~vwd~~  227 (228)
                      .++  +.++++++. ||.|++||+++++.+..+.    ..|.+.|.+++|+|++.++++|+.||.    |.+||..
T Consensus       369 ~~~--~~~l~s~~~-dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~  441 (445)
T 2ovr_B          369 QFN--KNFVITSSD-DGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFD  441 (445)
T ss_dssp             EEC--SSEEEEEET-TSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECC
T ss_pred             EEC--CCEEEEEeC-CCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECC
Confidence            885  466666555 8999999999999887763    367889999999999999999999998    9999964

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.2e-32  Score=210.07  Aligned_cols=197  Identities=6%  Similarity=-0.005  Sum_probs=152.7

Q ss_pred             cCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEe--------e------------e------ccce-eeeccceee
Q 040370           18 DTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYL--------S------------A------NVPE-ISVNGAINQ   70 (228)
Q Consensus        18 ~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~--------~------------~------~~~~-~~~~~~i~~   70 (228)
                      -...|.+++|+|||+++|+++.|++|+  |.+.++.+.        .            .      .... .+ ...|.+
T Consensus        14 ~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~~l~gh~~~v~~V~FsPdg~~~~~~~~~~~~~~~~~~~~-~~~V~~   90 (588)
T 2j04_A           14 FEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAKDINCNSKNLFHVKEFPLEFENKLDFELAQQNGLLNSQP-VCYPRV   90 (588)
T ss_dssp             CSSSSCCEEECTTSCEEEECSSSEEEE--EECCCSCCSSBGGGTEEEEEECCCCCCTTTTSCCCSSCSSTTSC-SCCEEE
T ss_pred             hhccEEEEEECCCCCEEEEEcCCceee--cccccceecCCCccEEEEEECCCCCcceEEEEeCCCceEeecCC-CCcEEE
Confidence            467899999999999999999999996  544433110        0            0      0111 22 678999


Q ss_pred             EEeCCCCCeEEEEecCCeEEEEeCCCCceeeEEecccc---cceeEEEEECCCCCEEEEeeCCCeEEEEEccCCee----
Q 040370           71 VRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHG---TAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRL----  143 (228)
Q Consensus        71 ~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~---~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~----  143 (228)
                      ++|+|+|+.||+++.||.|++||.+.  .+..+. ++.   ...+.+++|+|+|++|++|+.||+|++||+.+++.    
T Consensus        91 vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~  167 (588)
T 2j04_A           91 CKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPE  167 (588)
T ss_dssp             EEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCC
T ss_pred             EEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCcccccc
Confidence            99999999999999999999999544  444444 321   23699999999999999999999999999998752    


Q ss_pred             ---EEEEec--ceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCccee---EEeecCCCCCcEEEEeCCCCcEEEEe
Q 040370          144 ---VKQYLG--ATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKV---AKWSSNHIGAPRWIEHSPAEAAFITC  215 (228)
Q Consensus       144 ---~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~s~  215 (228)
                         +.++..  ..|...+.+++|+|++  +++++. |+.+++||+..+...   .++..+|...|.+++|+  ++.||++
T Consensus       168 ~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~-D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g~~LASa  242 (588)
T 2j04_A          168 FYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALS-NNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--DYKVVLT  242 (588)
T ss_dssp             CEEEEEEECSCTTCCCCEEEEEEETTE--EEEEET-TCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--TTEEEEE
T ss_pred             ceeeeeeecccccccccEEEEEEcCCc--EEEEeC-CCeEEEEECCCCccccceeeecccccCcEEEEEEE--CCEEEEE
Confidence               455531  1256789999999999  555555 899999999887742   34434788999999999  6889988


Q ss_pred             cCCCCEEEeee
Q 040370          216 GTDRSVRFWKE  226 (228)
Q Consensus       216 ~~dg~i~vwd~  226 (228)
                      + ++.|++||+
T Consensus       243 ~-~~tIkLWd~  252 (588)
T 2j04_A          243 C-PGYVHKIDL  252 (588)
T ss_dssp             C-SSEEEEEET
T ss_pred             e-CCeEEEEEC
Confidence            7 699999996

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=6.9e-31  Score=200.53  Aligned_cols=205  Identities=19%  Similarity=0.362  Sum_probs=174.9

Q ss_pred             CCcCCccccceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeE
Q 040370            1 FFDFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMY   80 (228)
Q Consensus         1 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l   80 (228)
                      +||+...  +....+.+|...|.+++|+  ++++++|+.||.|++||+.+++....+..   | ...|.++.|+  ++.+
T Consensus       143 vwd~~~~--~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~---h-~~~v~~~~~~--~~~l  212 (445)
T 2ovr_B          143 VWSAVTG--KCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHTLYG---H-TSTVRCMHLH--EKRV  212 (445)
T ss_dssp             EEETTTC--CEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEECC---C-SSCEEEEEEE--TTEE
T ss_pred             EEECCCC--cEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEEEECC---C-CCcEEEEEec--CCEE
Confidence            4776643  3445566899999999997  67999999999999999999987766543   2 7889999995  5689


Q ss_pred             EEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEE
Q 040370           81 VTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAV  160 (228)
Q Consensus        81 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~  160 (228)
                      ++|+.||.|++||+++++....+..+  ...+.++.+  +++++++++.|+.|++||+++++.+..+..  +...+.++.
T Consensus       213 ~s~s~dg~i~~wd~~~~~~~~~~~~~--~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~v~~~~  286 (445)
T 2ovr_B          213 VSGSRDATLRVWDIETGQCLHVLMGH--VAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQG--HTNRVYSLQ  286 (445)
T ss_dssp             EEEETTSEEEEEESSSCCEEEEEECC--SSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEECC--CSSCEEEEE
T ss_pred             EEEeCCCEEEEEECCCCcEEEEEcCC--cccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEecC--CCCceEEEE
Confidence            99999999999999999998888776  778999998  688999999999999999999999888876  566777787


Q ss_pred             ECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370          161 FNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEI  227 (228)
Q Consensus       161 ~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~  227 (228)
                      +  ++.++++++. |+.|++||+++++.+..+ .+|...+.++.+  ++++|++++.||.|++||+.
T Consensus       287 ~--~~~~l~~~~~-d~~i~i~d~~~~~~~~~~-~~~~~~v~~~~~--~~~~l~~~~~dg~i~vwd~~  347 (445)
T 2ovr_B          287 F--DGIHVVSGSL-DTSIRVWDVETGNCIHTL-TGHQSLTSGMEL--KDNILVSGNADSTVKIWDIK  347 (445)
T ss_dssp             E--CSSEEEEEET-TSCEEEEETTTCCEEEEE-CCCCSCEEEEEE--ETTEEEEEETTSCEEEEETT
T ss_pred             E--CCCEEEEEeC-CCeEEEEECCCCCEEEEE-cCCcccEEEEEE--eCCEEEEEeCCCeEEEEECC
Confidence            7  6777777665 899999999999998887 689999998887  46799999999999999963

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=100.00  E-value=2.4e-30  Score=194.32  Aligned_cols=211  Identities=13%  Similarity=0.103  Sum_probs=172.2

Q ss_pred             CCcCCccccceeEEEeecCcceEEEEEeCCCCEE-EEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCe
Q 040370            1 FFDFSKATAKRAFRVIQDTHNVRSVSFHPSGDFL-LAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGM   79 (228)
Q Consensus         1 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~   79 (228)
                      +||+...   +......+...+.+++|+|+++++ ++++.|+.|++||+.+++.......     ...+.+++|+|++++
T Consensus        16 v~d~~~~---~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~-----~~~v~~~~~spdg~~   87 (391)
T 1l0q_A           16 VIDVTSN---KVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPA-----GSSPQGVAVSPDGKQ   87 (391)
T ss_dssp             EEETTTT---EEEEEEECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEEC-----SSSEEEEEECTTSSE
T ss_pred             EEECCCC---eEEEEeecCCCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEEC-----CCCccceEECCCCCE
Confidence            4666643   233334455679999999999977 6777899999999999987665543     348999999999997


Q ss_pred             EE-EEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEE-EEeeCCCeEEEEEccCCeeEEEEecceeeeeee
Q 040370           80 YV-TASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFV-LSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRF  157 (228)
Q Consensus        80 l~-~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~  157 (228)
                      ++ +++.++.|++||+.+++....+..   ...+.+++|+|+++++ ++++.|+.|++||+++++....+..+   ..+.
T Consensus        88 l~~~~~~~~~v~v~d~~~~~~~~~~~~---~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~---~~~~  161 (391)
T 1l0q_A           88 VYVTNMASSTLSVIDTTSNTVAGTVKT---GKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG---RSPK  161 (391)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEEEC---SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC---SSEE
T ss_pred             EEEEECCCCEEEEEECCCCeEEEEEeC---CCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecC---CCcc
Confidence            75 555679999999999988877765   3467999999999977 68888999999999999888877642   3457


Q ss_pred             EEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEec---CCCCEEEeeec
Q 040370          158 QAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCG---TDRSVRFWKEI  227 (228)
Q Consensus       158 ~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~---~dg~i~vwd~~  227 (228)
                      .+.|+|+++++++++..++.|++||+++++....+  .+...+.+++|+|++++|++++   .++.|++||+.
T Consensus       162 ~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~--~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~  232 (391)
T 1l0q_A          162 GIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTV--KVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTG  232 (391)
T ss_dssp             EEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE--ECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETT
T ss_pred             eEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEE--ecCCCccceEECCCCCEEEEEecCcCCCcEEEEECC
Confidence            88999999999777777899999999998877766  3566889999999999998888   68999999963

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.9e-31  Score=215.14  Aligned_cols=215  Identities=12%  Similarity=0.188  Sum_probs=168.0

Q ss_pred             CCcCCccccceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeE
Q 040370            1 FFDFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMY   80 (228)
Q Consensus         1 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l   80 (228)
                      |||...   .+......|..+|.+++|+| +++|++++.|+.|++||+.+++.+..+.    + ...|++++|+|+++++
T Consensus        43 lw~~~~---~~~~~~~~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~~~~----~-~~~V~~v~~sp~g~~l  113 (902)
T 2oaj_A           43 IYGQQQ---VEVVIKLEDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKVLTTVF----V-PGKITSIDTDASLDWM  113 (902)
T ss_dssp             EECSTT---CEEEEECSSCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCSEEEEEE----C-SSCEEEEECCTTCSEE
T ss_pred             EEeCCC---cEEEEEcCCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCcEEEEEc----C-CCCEEEEEECCCCCEE
Confidence            465542   22333446888999999999 8899999999999999999988766553    2 6789999999999999


Q ss_pred             EEEecCCeEEEEeCCCCceeeE-E--------ecccccceeEEEEECCC-CCEEEEeeCCCeEEEEEccCCeeEEEEecc
Q 040370           81 VTASKDGAIRLWDGVSANCVRS-I--------VGAHGTAEATSANFTKD-QRFVLSCGKDSTVKLWEVSSGRLVKQYLGA  150 (228)
Q Consensus        81 ~~~~~dg~v~iwd~~~~~~~~~-~--------~~~~~~~~i~~~~~~~~-~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~  150 (228)
                      ++|+.||.|++||+++++.... +        ....+...|.+++|+|+ +..+++|+.|+.| +||+++++.+..+..+
T Consensus       114 ~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~  192 (902)
T 2oaj_A          114 LIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYE  192 (902)
T ss_dssp             EEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCC
T ss_pred             EEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecc
Confidence            9999999999999998775311 1        11223678999999995 5789999999999 9999999888877653


Q ss_pred             ----------------eeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEee----c-------------CCC
Q 040370          151 ----------------THTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWS----S-------------NHI  197 (228)
Q Consensus       151 ----------------~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~----~-------------~~~  197 (228)
                                      .|...+.++.|+|++.++++++. |+.|++||+++++.+....    .             .|.
T Consensus       193 ~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~-Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~  271 (902)
T 2oaj_A          193 LPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHE-DNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNA  271 (902)
T ss_dssp             BCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEET-TCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCC
T ss_pred             cCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEEC-CCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCcccc
Confidence                            12467899999999999888666 8999999999988765311    1             134


Q ss_pred             CCcEEEEeC----CCC-cEEEEecCC-----CCEEEeee
Q 040370          198 GAPRWIEHS----PAE-AAFITCGTD-----RSVRFWKE  226 (228)
Q Consensus       198 ~~v~~~~~~----~~~-~~l~s~~~d-----g~i~vwd~  226 (228)
                      .+|.+++|+    |++ .+|++|+.|     ..+++|++
T Consensus       272 ~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~  310 (902)
T 2oaj_A          272 AKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDL  310 (902)
T ss_dssp             CEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEE
T ss_pred             CCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEec
Confidence            579999995    543 567777665     37888874

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=100.00  E-value=1.6e-29  Score=189.86  Aligned_cols=211  Identities=11%  Similarity=0.105  Sum_probs=170.2

Q ss_pred             CCcCCccccceeEEEeecCcceEEEEEeCCCCEEE-EecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCe
Q 040370            1 FFDFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLL-AGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGM   79 (228)
Q Consensus         1 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~   79 (228)
                      +||+...+   ......+...+.+++|+|++++|+ +++.++.|++||+.+++.......     ...+.+++|+|+++.
T Consensus        58 v~d~~~~~---~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~-----~~~~~~~~~s~dg~~  129 (391)
T 1l0q_A           58 IIDTATNN---VIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKT-----GKSPLGLALSPDGKK  129 (391)
T ss_dssp             EEETTTTE---EEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC-----SSSEEEEEECTTSSE
T ss_pred             EEECCCCe---EEEEEECCCCccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeC-----CCCcceEEECCCCCE
Confidence            36665332   333344555999999999999875 555679999999999887665442     456899999999997


Q ss_pred             E-EEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEE-EEeeCCCeEEEEEccCCeeEEEEecceeeeeee
Q 040370           80 Y-VTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFV-LSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRF  157 (228)
Q Consensus        80 l-~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~  157 (228)
                      + ++++.|+.|++||+++++....+..+   ..+.+++|+|+++++ ++++.++.|++||+++++....+..   ...+.
T Consensus       130 l~~~~~~~~~v~~~d~~~~~~~~~~~~~---~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~---~~~~~  203 (391)
T 1l0q_A          130 LYVTNNGDKTVSVINTVTKAVINTVSVG---RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKV---EAAPS  203 (391)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEEECC---SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC---SSEEE
T ss_pred             EEEEeCCCCEEEEEECCCCcEEEEEecC---CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEec---CCCcc
Confidence            7 68888999999999999888877663   356899999999887 6778899999999999988777653   44667


Q ss_pred             EEEECCCCcEEEEeeC--CCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEE-EEecCCCCEEEeeec
Q 040370          158 QAVFNDTEEFVLSIDE--PSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAF-ITCGTDRSVRFWKEI  227 (228)
Q Consensus       158 ~~~~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~s~~~dg~i~vwd~~  227 (228)
                      .+.++|+++++++++.  .++.|++||+++++.+..+ ..| ..+.+++|+|++++| ++++.|+.|++||+.
T Consensus       204 ~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~-~~~-~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~  274 (391)
T 1l0q_A          204 GIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARI-PVG-PDPAGIAVTPDGKKVYVALSFXNTVSVIDTA  274 (391)
T ss_dssp             EEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEE-ECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred             ceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEE-ecC-CCccEEEEccCCCEEEEEcCCCCEEEEEECC
Confidence            8899999999998874  5799999999999887777 344 357899999999877 677899999999963

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=100.00  E-value=6.5e-30  Score=189.78  Aligned_cols=200  Identities=12%  Similarity=0.181  Sum_probs=154.8

Q ss_pred             cceEEEEEeCCCCEE-EEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCC---------------------
Q 040370           20 HNVRSVSFHPSGDFL-LAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTG---------------------   77 (228)
Q Consensus        20 ~~v~~~~~~~~~~~l-~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---------------------   77 (228)
                      ..+..+++.++++.+ ++++.|+.|++||..+++.+..+..     ...|.+++|+++.                     
T Consensus        59 ~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~~-----~~~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~  133 (355)
T 3vu4_A           59 RHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIKV-----DAPVKDLFLSREFIVVSYGDVISVFKFGNPWKRI  133 (355)
T ss_dssp             SCCCEEEECTTSSEEEEECSSTTEEEEEETTTTEEEEEEEC-----SSCEEEEEECSSEEEEEETTEEEEEESSTTCCBS
T ss_pred             CCeEEEEEcCCCCEEEEEECCccEEEEEECCCCcEEEEEEC-----CCceEEEEEcCCEEEEEEcCEEEEEECCCCceee
Confidence            358888999988877 5678889999999999987765532     4567777776542                     


Q ss_pred             --------------CeEEE--EecCCeEEEEeCCCCc----------------eeeEEecccccceeEEEEECCCCCEEE
Q 040370           78 --------------GMYVT--ASKDGAIRLWDGVSAN----------------CVRSIVGAHGTAEATSANFTKDQRFVL  125 (228)
Q Consensus        78 --------------~~l~~--~~~dg~v~iwd~~~~~----------------~~~~~~~~~~~~~i~~~~~~~~~~~l~  125 (228)
                                    ++++.  |+.||.|++||+++++                ....+..|  ...|.+++|+|++++|+
T Consensus       134 ~~~~~~~~~~~~s~~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h--~~~v~~~~~s~~g~~l~  211 (355)
T 3vu4_A          134 TDDIRFGGVCEFSNGLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAH--TNPIKMVRLNRKSDMVA  211 (355)
T ss_dssp             SCCEEEEEEEEEETTEEEEEESSCTTCEEEEECCC------------------CCEEECCC--SSCEEEEEECTTSSEEE
T ss_pred             EEeccCCceEEEEccEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEcc--CCceEEEEECCCCCEEE
Confidence                          23444  5788899999988765                14556555  78999999999999999


Q ss_pred             EeeCCCe-EEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEE-------------
Q 040370          126 SCGKDST-VKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAK-------------  191 (228)
Q Consensus       126 ~~~~d~~-i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~-------------  191 (228)
                      +|+.|++ |++||+++++.+..+....|...+.+++|+|++.++++++. |+.|++||++.+.....             
T Consensus       212 s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~  290 (355)
T 3vu4_A          212 TCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSD-KWTLHVFEIFNDQDNKRHALKGWINMKYFQ  290 (355)
T ss_dssp             EEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEET-TCEEEEEESSCCSCCCSEETTTTEECCCCC
T ss_pred             EEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEEC-CCEEEEEEccCCCCcccccccceeeccccc
Confidence            9999998 99999999999988873235678999999999999988766 89999999976532110             


Q ss_pred             ---------eecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370          192 ---------WSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEI  227 (228)
Q Consensus       192 ---------~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~  227 (228)
                               +......+...++|++++++|++++.||.+++|++.
T Consensus       291 ~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~  335 (355)
T 3vu4_A          291 SEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVV  335 (355)
T ss_dssp             CSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEE
T ss_pred             cccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEE
Confidence                     111122334779999999999999999999999863

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=6.4e-30  Score=186.71  Aligned_cols=201  Identities=15%  Similarity=0.206  Sum_probs=159.0

Q ss_pred             ceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCCCcee
Q 040370           21 NVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANCV  100 (228)
Q Consensus        21 ~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~  100 (228)
                      ..++|+||+++ +||+|. |++|+|||+++++....+... . |...|++++|+|+++++++|+.||.|++||+++++.+
T Consensus        27 y~~~l~WS~~~-~lAvg~-D~tV~iWd~~tg~~~~~~~~~-~-~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~  102 (318)
T 4ggc_A           27 YLNLVDWSSGN-VLAVAL-DNSVYLWSASSGDILQLLQME-Q-PGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRL  102 (318)
T ss_dssp             TCBCEEECTTS-EEEEEE-TTEEEEEETTTCCEEEEEECC-S-TTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEE
T ss_pred             cceEEEECCCC-EEEEEe-CCEEEEEECCCCCEEEEEEec-C-CCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeE
Confidence            35789999876 777765 899999999999887765432 2 2778999999999999999999999999999988876


Q ss_pred             eEEeccc---------------------------------------ccceeEEEEECCCCCEEEEeeCCCeEEEEEccCC
Q 040370          101 RSIVGAH---------------------------------------GTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSG  141 (228)
Q Consensus       101 ~~~~~~~---------------------------------------~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~  141 (228)
                      ..+..|.                                       +...+..+.+.++++++++++.|+.|++||++++
T Consensus       103 ~~~~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~  182 (318)
T 4ggc_A          103 RNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPG  182 (318)
T ss_dssp             EEEECCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCB
T ss_pred             EEecCccceEEEeecCCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCC
Confidence            6654331                                       2456788889999999999999999999999876


Q ss_pred             eeEEE--EecceeeeeeeEEEECCCCcEEE--EeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEec-
Q 040370          142 RLVKQ--YLGATHTQLRFQAVFNDTEEFVL--SIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCG-  216 (228)
Q Consensus       142 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~--~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~-  216 (228)
                      +....  .....+...+..+.+.|.+..++  ++++.++.|++||.+........  .+...+..+.|+|++..+++++ 
T Consensus       183 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~sg  260 (318)
T 4ggc_A          183 EGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAV--DAHSQVCSILWSPHYKELISGHG  260 (318)
T ss_dssp             TTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEE--ECSSCEEEEEEETTTTEEEEEEC
T ss_pred             cccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccc--cceeeeeeeeecccccceEEEEE
Confidence            53221  11222556677888888776544  45667899999999888877665  5777899999999988877654 


Q ss_pred             -CCCCEEEeeec
Q 040370          217 -TDRSVRFWKEI  227 (228)
Q Consensus       217 -~dg~i~vwd~~  227 (228)
                       .|+.|++||+.
T Consensus       261 ~~d~~i~iwd~~  272 (318)
T 4ggc_A          261 FAQNQLVIWKYP  272 (318)
T ss_dssp             TTTCCEEEEETT
T ss_pred             cCCCEEEEEECC
Confidence             79999999964

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=100.00  E-value=1.2e-31  Score=201.66  Aligned_cols=194  Identities=7%  Similarity=0.052  Sum_probs=134.1

Q ss_pred             CCCCEEEEecCCCeEEEEEcccceEEee--eccceeeeccceeeEEeCC--------CCCeEEEEecCCeEEEEeCCCCc
Q 040370           29 PSGDFLLAGTDHPIAHLYDVNTFQCYLS--ANVPEISVNGAINQVRYSS--------TGGMYVTASKDGAIRLWDGVSAN   98 (228)
Q Consensus        29 ~~~~~l~~~~~d~~i~vw~~~~~~~~~~--~~~~~~~~~~~i~~~~~~~--------~~~~l~~~~~dg~v~iwd~~~~~   98 (228)
                      +++.+|++|+.|++|++||.+.++....  .....+| .+.|++++|+|        ++++|++|+.|++|+|||++++.
T Consensus        99 ~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH-~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~  177 (393)
T 4gq1_A           99 VYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGH-HNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEG  177 (393)
T ss_dssp             EEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSC-SSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTE
T ss_pred             CCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCC-CCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCc
Confidence            3556899999999999999998875432  2334445 89999999998        78899999999999999999888


Q ss_pred             eeeEEecccccceeEEEEECCCC-CEEEEeeCCCeEEEEEccCCeeEEEEec-----------------------ceeee
Q 040370           99 CVRSIVGAHGTAEATSANFTKDQ-RFVLSCGKDSTVKLWEVSSGRLVKQYLG-----------------------ATHTQ  154 (228)
Q Consensus        99 ~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~~wd~~~~~~~~~~~~-----------------------~~~~~  154 (228)
                      ....+..+  ...+.+++|+|++ .+|++++.|++|++||+++++.......                       ..+..
T Consensus       178 ~~~~~~~~--~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~  255 (393)
T 4gq1_A          178 PILAGYPL--SSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIAS  255 (393)
T ss_dssp             EEEEEEEC--SSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSS
T ss_pred             eeeeecCC--CCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccc
Confidence            87777766  5689999999987 4799999999999999998765433221                       11334


Q ss_pred             eeeEEEEC-CCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEE------------------EeCC--CCcEEE
Q 040370          155 LRFQAVFN-DTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWI------------------EHSP--AEAAFI  213 (228)
Q Consensus       155 ~~~~~~~~-~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~------------------~~~~--~~~~l~  213 (228)
                      .+..+.|. +++..+++++. |+.+++||+..++....+ ..|...+..+                  .++|  ++.+++
T Consensus       256 ~v~~v~~~~~dg~~l~s~s~-d~~i~vwd~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  333 (393)
T 4gq1_A          256 SLANVRWIGSDGSGILAMCK-SGAWLRWNLFANNDYNEI-SDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFAT  333 (393)
T ss_dssp             SCSEEEEETTTTCEEEEECT-TSEEEEEEC--------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEE
T ss_pred             cceeeeeecCCCCEEEEEeC-CCCEEEEECccCCCCceE-eeecCccccEEEccccccccccCcceeEEEccCCCCEEEE
Confidence            45566665 77888777554 899999999887665544 3333333333                  2333  445678


Q ss_pred             EecCCCCEEEeeec
Q 040370          214 TCGTDRSVRFWKEI  227 (228)
Q Consensus       214 s~~~dg~i~vwd~~  227 (228)
                      +|+.||.|++||+.
T Consensus       334 sgs~Dg~V~lwd~~  347 (393)
T 4gq1_A          334 AHSQHGLIQLINTY  347 (393)
T ss_dssp             EETTTTEEEEEETT
T ss_pred             EECCCCEEEEEECC
Confidence            88999999999963

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=4.2e-30  Score=194.86  Aligned_cols=199  Identities=16%  Similarity=0.254  Sum_probs=157.4

Q ss_pred             ceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCCCcee
Q 040370           21 NVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANCV  100 (228)
Q Consensus        21 ~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~  100 (228)
                      .++.|+|+++ +.||+|. |++|+|||..+++....+... .| ...|++++|+|+|++|++|+.||.|++||+++++.+
T Consensus       107 y~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~~~~~~~-~~-~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~  182 (420)
T 4gga_A          107 YLNLVDWSSG-NVLAVAL-DNSVYLWSASSGDILQLLQME-QP-GEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRL  182 (420)
T ss_dssp             TCBCEEECTT-SEEEEEE-TTEEEEEETTTCCEEEEEECC-ST-TCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE
T ss_pred             cceeEEECCC-CEEEEEe-CCEEEEEECCCCCEEEEEEec-CC-CCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEE
Confidence            4677999975 5777776 899999999999877655432 22 678999999999999999999999999999988776


Q ss_pred             eEEeccc---------------------------------------ccceeEEEEECCCCCEEEEeeCCCeEEEEEccCC
Q 040370          101 RSIVGAH---------------------------------------GTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSG  141 (228)
Q Consensus       101 ~~~~~~~---------------------------------------~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~  141 (228)
                      ..+..|.                                       +...+..+.++|+++++++++.|+.+++||..++
T Consensus       183 ~~~~~h~~~v~~~s~~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~  262 (420)
T 4gga_A          183 RNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPG  262 (420)
T ss_dssp             EEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCC
T ss_pred             EEEeCCCCceEEEeeCCCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccc
Confidence            6654331                                       2456677788888888899999999999988765


Q ss_pred             ee----EEEEecceeeeeeeEEEECCCCcEEEE--eeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEe
Q 040370          142 RL----VKQYLGATHTQLRFQAVFNDTEEFVLS--IDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITC  215 (228)
Q Consensus       142 ~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~  215 (228)
                      +.    +....  .+...+..+.|+|.+..+++  +++.|+.|++||+++++....+  .+...+.++.|+|+++.++++
T Consensus       263 ~~~~~~~~~~~--~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~--~~~~~v~~~~~~~~~~~lv~~  338 (420)
T 4gga_A          263 EGGWVPLQTFT--QHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAV--DAHSQVCSILWSPHYKELISG  338 (420)
T ss_dssp             SSCSCCSEEEC--CCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEE--ECSSCEEEEEEETTTTEEEEE
T ss_pred             cccceeeeeec--ccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceee--ccccceeeeeecCCCCeEEEE
Confidence            43    22232  26677889999998776554  3557899999999999988887  345678999999999988876


Q ss_pred             c--CCCCEEEeeec
Q 040370          216 G--TDRSVRFWKEI  227 (228)
Q Consensus       216 ~--~dg~i~vwd~~  227 (228)
                      +  .|+.|+|||+.
T Consensus       339 sg~~d~~I~iwd~~  352 (420)
T 4gga_A          339 HGFAQNQLVIWKYP  352 (420)
T ss_dssp             ECTTTCCEEEEETT
T ss_pred             EecCCCEEEEEECC
Confidence            4  79999999963

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.98  E-value=8.1e-30  Score=193.81  Aligned_cols=198  Identities=12%  Similarity=0.117  Sum_probs=168.5

Q ss_pred             ecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEE-EEecCCeEEEEeCC
Q 040370           17 QDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYV-TASKDGAIRLWDGV   95 (228)
Q Consensus        17 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~dg~v~iwd~~   95 (228)
                      +|...|.+++|+|++.++++++.|+.|++||+++++.......   + ...+.+++|+|+++.++ +++.|+.|++||++
T Consensus       167 ~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~  242 (433)
T 3bws_A          167 KKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDL---T-GKWSKILLYDPIRDLVYCSNWISEDISVIDRK  242 (433)
T ss_dssp             TTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEEC---S-SSSEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             ccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcC---C-CCCeeEEEEcCCCCEEEEEecCCCcEEEEECC
Confidence            6788999999999999999999999999999998887665542   2 67899999999999775 55589999999999


Q ss_pred             CCceeeEEecccccceeEEEEECCCCCEEEEee--------CCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcE
Q 040370           96 SANCVRSIVGAHGTAEATSANFTKDQRFVLSCG--------KDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEF  167 (228)
Q Consensus        96 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--------~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (228)
                      +++....+..   ...+.+++|+|+++++++++        .|+.|++||+++++....+.   +...+..+.|+|+++.
T Consensus       243 ~~~~~~~~~~---~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~---~~~~~~~~~~~~~g~~  316 (433)
T 3bws_A          243 TKLEIRKTDK---IGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIG---PPGNKRHIVSGNTENK  316 (433)
T ss_dssp             TTEEEEECCC---CSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEE---EEECEEEEEECSSTTE
T ss_pred             CCcEEEEecC---CCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeecc---CCCCcceEEECCCCCE
Confidence            9988777665   34689999999999999888        48899999999988776653   4456778999999998


Q ss_pred             EEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecC---------------CCCEEEeee
Q 040370          168 VLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGT---------------DRSVRFWKE  226 (228)
Q Consensus       168 ~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~---------------dg~i~vwd~  226 (228)
                      +++++..|+.|++||+.+++....+  .+...+.+++|+|++++|++++.               ||.|++||+
T Consensus       317 l~~~~~~~~~v~v~d~~~~~~~~~~--~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~  388 (433)
T 3bws_A          317 IYVSDMCCSKIEVYDLKEKKVQKSI--PVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDT  388 (433)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEE--ECSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEET
T ss_pred             EEEEecCCCEEEEEECCCCcEEEEe--cCCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEEC
Confidence            8888777999999999988887776  36778999999999998888776               579999996

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.98  E-value=8.4e-29  Score=188.24  Aligned_cols=212  Identities=11%  Similarity=0.109  Sum_probs=171.4

Q ss_pred             CCcCCccccceeEEEeecCcceEEEEEeCCCCEEE-EecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCe
Q 040370            1 FFDFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLL-AGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGM   79 (228)
Q Consensus         1 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~   79 (228)
                      +||+...  +....+..|...+.+++|+|++++++ +++.++.|++||+.+++.......     ...+.+++|+|+++.
T Consensus       195 ~~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~-----~~~~~~~~~~~~g~~  267 (433)
T 3bws_A          195 VFDLKTL--AYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDK-----IGLPRGLLLSKDGKE  267 (433)
T ss_dssp             EEETTTC--CEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCC-----CSEEEEEEECTTSSE
T ss_pred             EEECCCc--eEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecC-----CCCceEEEEcCCCCE
Confidence            4666533  33344457889999999999999885 555899999999999887665543     345899999999999


Q ss_pred             EEEEe--------cCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEE-EEeeCCCeEEEEEccCCeeEEEEecc
Q 040370           80 YVTAS--------KDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFV-LSCGKDSTVKLWEVSSGRLVKQYLGA  150 (228)
Q Consensus        80 l~~~~--------~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~d~~i~~wd~~~~~~~~~~~~~  150 (228)
                      +++++        .||.|++||+++++....+..   ...+.+++|+|+++.+ ++++.|+.|++||+++++....+.  
T Consensus       268 l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~---~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~--  342 (433)
T 3bws_A          268 LYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGP---PGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP--  342 (433)
T ss_dssp             EEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEE---EECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE--
T ss_pred             EEEEECCCCccccCCCeEEEEECCCCcEEeeccC---CCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEec--
Confidence            99888        488999999998887766533   4578899999999754 666899999999999988877765  


Q ss_pred             eeeeeeeEEEECCCCcEEEEeeCC--------------CCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEec
Q 040370          151 THTQLRFQAVFNDTEEFVLSIDEP--------------SNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCG  216 (228)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~--------------d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~  216 (228)
                       +...+..++++|+++++++++..              ||.|++||..+++....+. . ...+.+++|+|++++|++++
T Consensus       343 -~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~-~-~~~~~~~~~s~dg~~l~~~~  419 (433)
T 3bws_A          343 -VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWE-A-GNQPTGLDVSPDNRYLVISD  419 (433)
T ss_dssp             -CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEE-C-SSSEEEEEECTTSCEEEEEE
T ss_pred             -CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEec-C-CCCCceEEEcCCCCEEEEEE
Confidence             34557789999999988887664              4699999999998888773 3 55789999999999998876


Q ss_pred             C-CCCEEEeeec
Q 040370          217 T-DRSVRFWKEI  227 (228)
Q Consensus       217 ~-dg~i~vwd~~  227 (228)
                      . |+.|++|++.
T Consensus       420 ~~d~~i~v~~~~  431 (433)
T 3bws_A          420 FLDHQIRVYRRD  431 (433)
T ss_dssp             TTTTEEEEEEET
T ss_pred             CCCCeEEEEEec
Confidence            4 9999999974

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.97  E-value=3.5e-29  Score=184.53  Aligned_cols=185  Identities=15%  Similarity=0.271  Sum_probs=145.0

Q ss_pred             CCcCCcccc--ceeEEEeecCcceEEEEEeC--CCCEEEEecCCCeEEEEEcccce---------EEeeeccceeeeccc
Q 040370            1 FFDFSKATA--KRAFRVIQDTHNVRSVSFHP--SGDFLLAGTDHPIAHLYDVNTFQ---------CYLSANVPEISVNGA   67 (228)
Q Consensus         1 iwd~~~~~~--~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~vw~~~~~~---------~~~~~~~~~~~~~~~   67 (228)
                      |||+.....  .....+.+|..+|.+++|+|  ++++|++|+.||.|++||+..++         ......   .| ...
T Consensus        37 iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~---~~-~~~  112 (351)
T 3f3f_A           37 VFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLN---DS-KGS  112 (351)
T ss_dssp             EEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEEC---CC-SSC
T ss_pred             EEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeec---cc-CCc
Confidence            477765433  33445568999999999999  69999999999999999998863         233222   22 789


Q ss_pred             eeeEEeCCC--CCeEEEEecCCeEEEEeCCCCceee--------------------------------------------
Q 040370           68 INQVRYSST--GGMYVTASKDGAIRLWDGVSANCVR--------------------------------------------  101 (228)
Q Consensus        68 i~~~~~~~~--~~~l~~~~~dg~v~iwd~~~~~~~~--------------------------------------------  101 (228)
                      |.+++|+|+  ++++++++.||.|++||+++++.+.                                            
T Consensus       113 v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~  192 (351)
T 3f3f_A          113 LYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQ  192 (351)
T ss_dssp             EEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTE
T ss_pred             eeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCC
Confidence            999999999  9999999999999999987654211                                            


Q ss_pred             --------------EEecccccceeEEEEECCCC----CEEEEeeCCCeEEEEEccCC----------------------
Q 040370          102 --------------SIVGAHGTAEATSANFTKDQ----RFVLSCGKDSTVKLWEVSSG----------------------  141 (228)
Q Consensus       102 --------------~~~~~~~~~~i~~~~~~~~~----~~l~~~~~d~~i~~wd~~~~----------------------  141 (228)
                                    ......+...|.+++|+|++    ++|++++.||.|++||++.+                      
T Consensus       193 ~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (351)
T 3f3f_A          193 AIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADV  272 (351)
T ss_dssp             EEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC---------------------
T ss_pred             cEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCccc
Confidence                          11111236789999999998    89999999999999999875                      


Q ss_pred             ------------------------eeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEe
Q 040370          142 ------------------------RLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKW  192 (228)
Q Consensus       142 ------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~  192 (228)
                                              +.+..+.+  |...+.++.|+|++.++++++. ||.|++||+.+++....+
T Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--h~~~v~~~~~s~~~~~l~s~~~-dg~v~iw~~~~~~~~~~~  344 (351)
T 3f3f_A          273 DMDAQGRSDSNTEEKAELQSNLQVELLSEHDD--HNGEVWSVSWNLTGTILSSAGD-DGKVRLWKATYSNEFKCM  344 (351)
T ss_dssp             ------------------CCSEEEEEEEEECT--TSSCEEEEEECSSSCCEEEEET-TSCEEEEEECTTSCEEEE
T ss_pred             ccccccccccccceeeeecccccccEEEEEec--ccccEEEEEEcCCCCEEEEecC-CCcEEEEecCcCcchhhe
Confidence                                    34444444  5677999999999999888766 899999999988765544

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.97  E-value=8.6e-28  Score=181.79  Aligned_cols=209  Identities=14%  Similarity=0.114  Sum_probs=161.6

Q ss_pred             CCcCCccccceeEEEeecCcceEEEEEeCCCCEEEEecCCC---eEEEEEcccceEEeeeccceeeeccceeeEEeCCCC
Q 040370            1 FFDFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHP---IAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTG   77 (228)
Q Consensus         1 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~---~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~   77 (228)
                      +||+..   .....+.+|...+.+++|+|+|++|++++.++   .|++||+.+++......    + ...+.+++|+|+|
T Consensus       163 i~d~~g---~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~----~-~~~~~~~~~spdg  234 (415)
T 2hqs_A          163 VSDYDG---YNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVAS----F-PRHNGAPAFSPDG  234 (415)
T ss_dssp             EEETTS---CSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEEC----C-SSCEEEEEECTTS
T ss_pred             EEcCCC---CCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEEeec----C-CCcccCEEEcCCC
Confidence            356552   33456667999999999999999999998875   99999999887643221    2 5679999999999


Q ss_pred             CeEE-EEecCCe--EEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeC-CC--eEEEEEccCCeeEEEEecce
Q 040370           78 GMYV-TASKDGA--IRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGK-DS--TVKLWEVSSGRLVKQYLGAT  151 (228)
Q Consensus        78 ~~l~-~~~~dg~--v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~--~i~~wd~~~~~~~~~~~~~~  151 (228)
                      +.|+ +++.++.  |++||+++++. ..+..+  ...+.+++|+|++++|++++. ++  .|++||+.+++.. .+..  
T Consensus       235 ~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~--~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~-~l~~--  308 (415)
T 2hqs_A          235 SKLAFALSKTGSLNLYVMDLASGQI-RQVTDG--RSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQ-RITW--  308 (415)
T ss_dssp             SEEEEEECTTSSCEEEEEETTTCCE-EECCCC--SSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCE-ECCC--
T ss_pred             CEEEEEEecCCCceEEEEECCCCCE-EeCcCC--CCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEE-EEec--
Confidence            9877 6666654  99999988775 344443  567899999999999988876 44  6888899877643 2322  


Q ss_pred             eeeeeeEEEECCCCcEEEEeeCCC--CeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCC---CEEEeee
Q 040370          152 HTQLRFQAVFNDTEEFVLSIDEPS--NEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDR---SVRFWKE  226 (228)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~d--~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg---~i~vwd~  226 (228)
                      +...+..+.|+|++++++.++..+  ..|++||+.+++.. .+ ..+. .+.+++|+|++++|++++.|+   .|.+||+
T Consensus       309 ~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l-~~~~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~  385 (415)
T 2hqs_A          309 EGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VL-SSTF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVST  385 (415)
T ss_dssp             SSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-EC-CCSS-SCEEEEECTTSSEEEEEEEETTEEEEEEEET
T ss_pred             CCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE-Ee-cCCC-CcCCeEEcCCCCEEEEEEcCCCccEEEEEEC
Confidence            345677899999999998877643  58999999988764 33 3443 899999999999999988777   6888885

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.97  E-value=6.2e-29  Score=179.17  Aligned_cols=167  Identities=10%  Similarity=0.106  Sum_probs=126.8

Q ss_pred             ceeEEEeecCcceEEEEEeC---CCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeE------
Q 040370           10 KRAFRVIQDTHNVRSVSFHP---SGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMY------   80 (228)
Q Consensus        10 ~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l------   80 (228)
                      +....+..|...++.++|+|   ++.+|++|+.|++|+|||+++++++..+.....+ ...+.+++|+|+|+++      
T Consensus       169 ~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~-v~~v~~vafSpdG~~lvs~s~~  247 (356)
T 2w18_A          169 GGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSY-QASVCHKAYSEMGLLFIVLSHP  247 (356)
T ss_dssp             CEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC----CCCEEEEEEETTEEEEEEC--
T ss_pred             ceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcc-eeeeEEEEECCCCCEEEEeccC
Confidence            34455567888888888888   7799999999999999999999988877543222 4567888999999876      


Q ss_pred             ------EEEecCCeEEEEeCCCCceeeEEe----cccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecc
Q 040370           81 ------VTASKDGAIRLWDGVSANCVRSIV----GAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGA  150 (228)
Q Consensus        81 ------~~~~~dg~v~iwd~~~~~~~~~~~----~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~  150 (228)
                            ++|+.|++|++||..+++.+..+.    ..+ ...+.+..+  ++.++++++.|++|++||+.+++.+.++.+ 
T Consensus       248 ~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh-~~~~lsg~~--sg~~lASgS~DgTIkIWDl~tGk~l~tL~g-  323 (356)
T 2w18_A          248 CAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQ-AGRFLEGDV--KDHCAAAILTSGTIAIWDLLLGQCTALLPP-  323 (356)
T ss_dssp             ----------CCEEEEEEETTTTEEEEEEEECCCTTC-CCCEEEEEE--ETTEEEEEETTSCEEEEETTTCSEEEEECC-
T ss_pred             CCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCC-cceeEcccc--CCCEEEEEcCCCcEEEEECCCCcEEEEecC-
Confidence                  568889999999999998776552    111 223333333  378899999999999999999999999876 


Q ss_pred             eeeee-eeEEEECCCCcEEEEeeCCCCeEEEEEc
Q 040370          151 THTQL-RFQAVFNDTEEFVLSIDEPSNEIVIWDA  183 (228)
Q Consensus       151 ~~~~~-~~~~~~~~~~~~~~~~~~~d~~i~i~d~  183 (228)
                       |... +..++|+|+++++++++ .|++|++||+
T Consensus       324 -H~~~vvs~vafSPDG~~LaSGS-~D~TIklWd~  355 (356)
T 2w18_A          324 -VSDQHWSFVKWSGTDSHLLAGQ-KDGNIFVYHY  355 (356)
T ss_dssp             -C--CCCCEEEECSSSSEEEEEC-TTSCEEEEEE
T ss_pred             -CCCCeEEEEEECCCCCEEEEEE-CCCcEEEecC
Confidence             3333 34589999999988865 4899999995

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.96  E-value=7.6e-27  Score=177.36  Aligned_cols=204  Identities=9%  Similarity=0.012  Sum_probs=150.6

Q ss_pred             CcceEEEEEeCCCCEEEEecCCCeEEEEEcccceE-----------EeeeccceeeeccceeeEEeCCCCCeEE----EE
Q 040370           19 THNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQC-----------YLSANVPEISVNGAINQVRYSSTGGMYV----TA   83 (228)
Q Consensus        19 ~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~-----------~~~~~~~~~~~~~~i~~~~~~~~~~~l~----~~   83 (228)
                      ...++.+++++++.++++++.++ +++|+......           .........++...|.+++|+|++++|+    +|
T Consensus        36 ~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sg  114 (434)
T 2oit_A           36 KERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSS  114 (434)
T ss_dssp             CSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEET
T ss_pred             CCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEecc
Confidence            34588999999999999999887 88988653211           1111111122356799999999999999    78


Q ss_pred             ecCCeEEEEeCCCC--------ceeeEEec-ccccceeEEEEECCC-CCEEEEeeCCCeEEEEEccCCeeEEEEecceee
Q 040370           84 SKDGAIRLWDGVSA--------NCVRSIVG-AHGTAEATSANFTKD-QRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHT  153 (228)
Q Consensus        84 ~~dg~v~iwd~~~~--------~~~~~~~~-~~~~~~i~~~~~~~~-~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~  153 (228)
                      +.|+.|++||++++        +.+..+.. ..|...|.+++|+|+ +.+|++++.||+|++||++++........  +.
T Consensus       115 s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~--~~  192 (434)
T 2oit_A          115 EYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLP--ST  192 (434)
T ss_dssp             TTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEEC--GG
T ss_pred             CCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccC--CC
Confidence            88999999998765        22222221 123778999999997 88999999999999999998866555444  56


Q ss_pred             eeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeec------CCCCCcEEEEeCCCCcEEEEe-cCCCC------
Q 040370          154 QLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSS------NHIGAPRWIEHSPAEAAFITC-GTDRS------  220 (228)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~l~s~-~~dg~------  220 (228)
                      ..+.+++|+|++.++++++. ||.|++||.+ ++....+..      .|...+.+++|++++.++++. ..||.      
T Consensus       193 ~~v~~v~wspdg~~lasgs~-dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~  270 (434)
T 2oit_A          193 VAVTSVCWSPKGKQLAVGKQ-NGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPD  270 (434)
T ss_dssp             GCEEEEEECTTSSCEEEEET-TSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCE
T ss_pred             CceeEEEEcCCCCEEEEEcC-CCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCc
Confidence            77899999999999998765 8999999998 554444421      123379999999988877543 34433      


Q ss_pred             EEEeeec
Q 040370          221 VRFWKEI  227 (228)
Q Consensus       221 i~vwd~~  227 (228)
                      +++|++.
T Consensus       271 v~i~~l~  277 (434)
T 2oit_A          271 VVMALLP  277 (434)
T ss_dssp             EEEEECC
T ss_pred             eEEEEec
Confidence            8899864

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.95  E-value=3.7e-26  Score=164.82  Aligned_cols=211  Identities=10%  Similarity=0.138  Sum_probs=156.2

Q ss_pred             CcCCccccceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEccc-ceEEeeeccceeeeccceeeEEeCCCCCeE
Q 040370            2 FDFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNT-FQCYLSANVPEISVNGAINQVRYSSTGGMY   80 (228)
Q Consensus         2 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l   80 (228)
                      ||+...   +...+..|...|.+++|+|++++|++++ ++.|.+||+.+ ++........   ....+.+++|+|+++++
T Consensus        27 ~d~~~~---~~~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~---~~~~~~~~~~spdg~~l   99 (297)
T 2ojh_A           27 FNIRTR---KMRVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGF---ATICNNDHGISPDGALY   99 (297)
T ss_dssp             EETTTT---EEEEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTT---CCCBCSCCEECTTSSEE
T ss_pred             EeCCCC---ceeeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEecccc---ccccccceEECCCCCEE
Confidence            555533   3445667899999999999999999987 78999999998 7655443322   14678999999999999


Q ss_pred             EEEe--cCCeEEEE--eCCCCceeeEEecccccceeEEEEECCCCCEEE-EeeCCCeEEEEEccC-CeeEEEEecceeee
Q 040370           81 VTAS--KDGAIRLW--DGVSANCVRSIVGAHGTAEATSANFTKDQRFVL-SCGKDSTVKLWEVSS-GRLVKQYLGATHTQ  154 (228)
Q Consensus        81 ~~~~--~dg~v~iw--d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~d~~i~~wd~~~-~~~~~~~~~~~~~~  154 (228)
                      ++++  .++...||  ++.+++ ...+..   ...+..++|+|++++|+ +++.++.+++|+++. ......+..  +..
T Consensus       100 ~~~~~~~~~~~~l~~~~~~~~~-~~~~~~---~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~  173 (297)
T 2ojh_A          100 AISDKVEFGKSAIYLLPSTGGT-PRLMTK---NLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTH--GEG  173 (297)
T ss_dssp             EEEECTTTSSCEEEEEETTCCC-CEECCS---SSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCC--SSS
T ss_pred             EEEEeCCCCcceEEEEECCCCc-eEEeec---CCCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEccc--CCC
Confidence            9998  33445555  544444 333333   23488899999999877 788899999998643 223333332  455


Q ss_pred             eeeEEEECCCCcEEEEeeCCCCeEEEEEcC-CcceeEEeecCCCCCcEEEEeCCCCcEEEEecCC-----------CCEE
Q 040370          155 LRFQAVFNDTEEFVLSIDEPSNEIVIWDAL-TAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTD-----------RSVR  222 (228)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d-----------g~i~  222 (228)
                      .+..+.|+|++++++.++..++.+++|++. .+.....+ ..|...+..++|+|++++|++++.+           +.|.
T Consensus       174 ~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~  252 (297)
T 2ojh_A          174 RNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERI-TDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQ  252 (297)
T ss_dssp             CEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEEC-CCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEE
T ss_pred             ccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEE-ecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEE
Confidence            678899999999988877667999999986 44455555 5677889999999999999988866           4589


Q ss_pred             Eeee
Q 040370          223 FWKE  226 (228)
Q Consensus       223 vwd~  226 (228)
                      +||+
T Consensus       253 ~~d~  256 (297)
T 2ojh_A          253 LMDM  256 (297)
T ss_dssp             EEET
T ss_pred             EEec
Confidence            9985

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.95  E-value=1.6e-25  Score=164.99  Aligned_cols=220  Identities=17%  Similarity=0.235  Sum_probs=155.0

Q ss_pred             CCcCCccccceeEEEeecCcceEEEEEeCCCCEEEEecCC-CeEEEEEcc--cceEEeeeccceeeeccceeeEEeCCCC
Q 040370            1 FFDFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDH-PIAHLYDVN--TFQCYLSANVPEISVNGAINQVRYSSTG   77 (228)
Q Consensus         1 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-~~i~vw~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~~   77 (228)
                      +||++............+...+.+++|+|++++|++++.+ +.|.+|++.  +++.........   ...+..++|+|++
T Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~s~dg   95 (343)
T 1ri6_A           19 VWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESAL---PGSLTHISTDHQG   95 (343)
T ss_dssp             EEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEC---SSCCSEEEECTTS
T ss_pred             EEEECCCCcEEEeeeEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeecccccc---CCCCcEEEEcCCC
Confidence            4666432222344556788899999999999988888776 999999998  554322211111   3478999999999


Q ss_pred             CeEEEEe-cCCeEEEEeCCC---CceeeEEecccccceeEEEEECCCCCEEEEee-CCCeEEEEEccC-CeeEEE----E
Q 040370           78 GMYVTAS-KDGAIRLWDGVS---ANCVRSIVGAHGTAEATSANFTKDQRFVLSCG-KDSTVKLWEVSS-GRLVKQ----Y  147 (228)
Q Consensus        78 ~~l~~~~-~dg~v~iwd~~~---~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~i~~wd~~~-~~~~~~----~  147 (228)
                      +++++++ .++.|.+||+..   .+....+..   ...+.+++|+|+++++++++ .++.|++||+.+ ++....    .
T Consensus        96 ~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~---~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~  172 (343)
T 1ri6_A           96 QFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEG---LDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEV  172 (343)
T ss_dssp             SEEEEEETTTTEEEEEEEETTEEEEEEEEECC---CTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEE
T ss_pred             CEEEEEecCCCeEEEEECCCCccccccccccC---CCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeeccccc
Confidence            9777665 488999999943   334444433   34578899999999888877 899999999987 544322    2


Q ss_pred             ecceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCC--cce--eEEee---cCC--CCCcEEEEeCCCCcEEE-EecC
Q 040370          148 LGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALT--AEK--VAKWS---SNH--IGAPRWIEHSPAEAAFI-TCGT  217 (228)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~--~~~--~~~~~---~~~--~~~v~~~~~~~~~~~l~-s~~~  217 (228)
                      ... .......+.|+|+++++++++..++.|.+||+..  ++.  .....   .++  ...+..++|+|++++|+ ++..
T Consensus       173 ~~~-~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~  251 (343)
T 1ri6_A          173 TTV-EGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRT  251 (343)
T ss_dssp             ECS-TTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETT
T ss_pred             ccC-CCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecC
Confidence            211 2235567899999999888876789999999954  332  11221   111  23566899999998776 5557


Q ss_pred             CCCEEEeeec
Q 040370          218 DRSVRFWKEI  227 (228)
Q Consensus       218 dg~i~vwd~~  227 (228)
                      ++.|.+||+.
T Consensus       252 ~~~i~v~d~~  261 (343)
T 1ri6_A          252 ASLITVFSVS  261 (343)
T ss_dssp             TTEEEEEEEC
T ss_pred             CCEEEEEEEc
Confidence            9999999974

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.95  E-value=2.2e-26  Score=174.09  Aligned_cols=214  Identities=7%  Similarity=0.033  Sum_probs=159.3

Q ss_pred             CCcC--CccccceeEEEeecCcceEEEEEeC--------------CCCEEEEecCC------CeEEEEEcccceEEeeec
Q 040370            1 FFDF--SKATAKRAFRVIQDTHNVRSVSFHP--------------SGDFLLAGTDH------PIAHLYDVNTFQCYLSAN   58 (228)
Q Consensus         1 iwd~--~~~~~~~~~~~~~~~~~v~~~~~~~--------------~~~~l~~~~~d------~~i~vw~~~~~~~~~~~~   58 (228)
                      |||+  .+.+......+.+|...+..+++++              .+..++.++.+      +.|++||++.+.. ..+ 
T Consensus        97 lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~~-~~l-  174 (415)
T 2hqs_A           97 LVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGYNQ-FVV-  174 (415)
T ss_dssp             EEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSCSC-EEE-
T ss_pred             EEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCCCC-EEE-
Confidence            5777  5444333345678888888888775              15566655543      7999999975432 222 


Q ss_pred             cceeeeccceeeEEeCCCCCeEEEEecCC---eEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEE-EeeCCCe--
Q 040370           59 VPEISVNGAINQVRYSSTGGMYVTASKDG---AIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVL-SCGKDST--  132 (228)
Q Consensus        59 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg---~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~d~~--  132 (228)
                        ..+ ...+.+++|+|+|+.|++++.++   .|++||+++++... +..+  ...+.+++|+|++++|+ +++.++.  
T Consensus       175 --~~~-~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~-l~~~--~~~~~~~~~spdg~~la~~~~~~g~~~  248 (415)
T 2hqs_A          175 --HRS-PQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VASF--PRHNGAPAFSPDGSKLAFALSKTGSLN  248 (415)
T ss_dssp             --EEE-SSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEE-EECC--SSCEEEEEECTTSSEEEEEECTTSSCE
T ss_pred             --eCC-CCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEE-eecC--CCcccCEEEcCCCCEEEEEEecCCCce
Confidence              223 77899999999999999999875   99999999887653 4443  56889999999999887 6666554  


Q ss_pred             EEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCC--eEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCc
Q 040370          133 VKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSN--EIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEA  210 (228)
Q Consensus       133 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~--~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~  210 (228)
                      |++||+++++. ..+..  +...+..+.|+|++++++.++..++  .|++||+.+++... + ..+...+.+++|+|+|+
T Consensus       249 i~~~d~~~~~~-~~l~~--~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~~-l-~~~~~~~~~~~~spdG~  323 (415)
T 2hqs_A          249 LYVMDLASGQI-RQVTD--GRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQR-I-TWEGSQNQDADVSSDGK  323 (415)
T ss_dssp             EEEEETTTCCE-EECCC--CSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEE-C-CCSSSEEEEEEECTTSS
T ss_pred             EEEEECCCCCE-EeCcC--CCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEEE-E-ecCCCcccCeEECCCCC
Confidence            99999988765 34433  4567788999999999888776455  68888988776433 3 35667889999999999


Q ss_pred             EEEEecCC---CCEEEeeec
Q 040370          211 AFITCGTD---RSVRFWKEI  227 (228)
Q Consensus       211 ~l~s~~~d---g~i~vwd~~  227 (228)
                      +|++++.+   ..|.+||+.
T Consensus       324 ~l~~~~~~~g~~~i~~~d~~  343 (415)
T 2hqs_A          324 FMVMVSSNGGQQHIAKQDLA  343 (415)
T ss_dssp             EEEEEEECSSCEEEEEEETT
T ss_pred             EEEEEECcCCceEEEEEECC
Confidence            99988764   579999863

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.95  E-value=4.8e-26  Score=172.94  Aligned_cols=167  Identities=14%  Similarity=0.150  Sum_probs=132.6

Q ss_pred             eecCcceEEEEEeCCCCEEE----EecCCCeEEEEEcccc--------eEEeeeccceeeeccceeeEEeCCC-CCeEEE
Q 040370           16 IQDTHNVRSVSFHPSGDFLL----AGTDHPIAHLYDVNTF--------QCYLSANVPEISVNGAINQVRYSST-GGMYVT   82 (228)
Q Consensus        16 ~~~~~~v~~~~~~~~~~~l~----~~~~d~~i~vw~~~~~--------~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~   82 (228)
                      ..+...|.+++|+|++++|+    +|+.|+.|++||+.++        +.+........| ...|.+++|+|+ +++|++
T Consensus        89 ~~~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h-~~~V~~v~~~p~~~~~las  167 (434)
T 2oit_A           89 VPMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDA-GGMVIDMKWNPTVPSMVAV  167 (434)
T ss_dssp             ECCSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSG-GGSEEEEEECSSCTTEEEE
T ss_pred             ccCCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCC-CCceEEEEECCCCCCEEEE
Confidence            35677899999999999999    7889999999999875        222222333333 889999999997 789999


Q ss_pred             EecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecce-----eeeeee
Q 040370           83 ASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGAT-----HTQLRF  157 (228)
Q Consensus        83 ~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~-----~~~~~~  157 (228)
                      ++.||+|++||++++........+  ...+.+++|+|++++|++|+.||.|++||++ ++....+..+.     +...+.
T Consensus       168 ~s~Dg~v~iwD~~~~~~~~~~~~~--~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~  244 (434)
T 2oit_A          168 CLADGSIAVLQVTETVKVCATLPS--TVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVL  244 (434)
T ss_dssp             EETTSCEEEEEESSSEEEEEEECG--GGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEE
T ss_pred             EECCCeEEEEEcCCCcceeeccCC--CCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEE
Confidence            999999999999988665555443  6789999999999999999999999999998 55555543321     234788


Q ss_pred             EEEECCCCcEEEEeeCCCC------eEEEEEcCCc
Q 040370          158 QAVFNDTEEFVLSIDEPSN------EIVIWDALTA  186 (228)
Q Consensus       158 ~~~~~~~~~~~~~~~~~d~------~i~i~d~~~~  186 (228)
                      ++.|++++.++++....||      .+++|++++.
T Consensus       245 ~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~  279 (434)
T 2oit_A          245 DVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKK  279 (434)
T ss_dssp             EEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred             EEEEecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence            9999999988877665443      3899999865

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.95  E-value=1.5e-24  Score=159.80  Aligned_cols=203  Identities=13%  Similarity=0.203  Sum_probs=143.7

Q ss_pred             CcceEEEEEeCCCCEEEEec-CCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEe-cCCeEEEEeCCC
Q 040370           19 THNVRSVSFHPSGDFLLAGT-DHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTAS-KDGAIRLWDGVS   96 (228)
Q Consensus        19 ~~~v~~~~~~~~~~~l~~~~-~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~v~iwd~~~   96 (228)
                      ...+..++|+|++++|++++ .++.|.+||+..+.......... . ...+.+++|+|+++++++++ .++.|.+||+.+
T Consensus        83 ~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~-~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~  160 (343)
T 1ri6_A           83 PGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVE-G-LDGCHSANISPDNRTLWVPALKQDRICLFTVSD  160 (343)
T ss_dssp             SSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEEC-C-CTTBCCCEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred             CCCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCcccccccccc-C-CCCceEEEECCCCCEEEEecCCCCEEEEEEecC
Confidence            34889999999999887665 48899999995332221111111 1 44688999999999888777 899999999987


Q ss_pred             -Cceee----EEecccccceeEEEEECCCCCEEEEee-CCCeEEEEEccC--Cee--EEEEecc----eeeeeeeEEEEC
Q 040370           97 -ANCVR----SIVGAHGTAEATSANFTKDQRFVLSCG-KDSTVKLWEVSS--GRL--VKQYLGA----THTQLRFQAVFN  162 (228)
Q Consensus        97 -~~~~~----~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~i~~wd~~~--~~~--~~~~~~~----~~~~~~~~~~~~  162 (228)
                       ++...    ...... ...+..++|+|+++++++++ .++.|.+||+..  ++.  .......    ........+.|+
T Consensus       161 ~~~~~~~~~~~~~~~~-~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s  239 (343)
T 1ri6_A          161 DGHLVAQDPAEVTTVE-GAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHIT  239 (343)
T ss_dssp             TSCEEEEEEEEEECST-TCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEEC
T ss_pred             CCceeeecccccccCC-CCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEEC
Confidence             54432    222222 45678899999999776554 789999999953  332  2222210    112345578999


Q ss_pred             CCCcEEEEeeCCCCeEEEEEcC--Cc--ceeEEeecCCCCCcEEEEeCCCCcEEEEec-CCCCEEEeee
Q 040370          163 DTEEFVLSIDEPSNEIVIWDAL--TA--EKVAKWSSNHIGAPRWIEHSPAEAAFITCG-TDRSVRFWKE  226 (228)
Q Consensus       163 ~~~~~~~~~~~~d~~i~i~d~~--~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~-~dg~i~vwd~  226 (228)
                      |+++++++++..++.|.+||+.  ++  +.+..+ ..+. .+..++|+|++++|++++ .++.|.+|++
T Consensus       240 ~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~-~~~~-~~~~~~~s~dg~~l~~~~~~~~~v~v~~~  306 (343)
T 1ri6_A          240 PDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQ-PTET-QPRGFNVDHSGKYLIAAGQKSHHISVYEI  306 (343)
T ss_dssp             TTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEE-ECSS-SCCCEEECTTSSEEEEECTTTCEEEEEEE
T ss_pred             CCCCEEEEEecCCCEEEEEEEcCCCCceEEeeee-cCCC-ccceEEECCCCCEEEEecCCCCeEEEEEE
Confidence            9999998877778999999998  22  333333 2333 388999999999888877 6899999965

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.95  E-value=2.2e-24  Score=159.52  Aligned_cols=223  Identities=9%  Similarity=0.097  Sum_probs=152.6

Q ss_pred             CcCCccccceeEEEeecCcceEEEEEeCCCCEEEEec-CCCeEEEEEccc-ceE--Eeeeccceee-----eccceeeEE
Q 040370            2 FDFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGT-DHPIAHLYDVNT-FQC--YLSANVPEIS-----VNGAINQVR   72 (228)
Q Consensus         2 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~vw~~~~-~~~--~~~~~~~~~~-----~~~~i~~~~   72 (228)
                      ||+.....+.......+...+..++|+|++++|++++ .++.|.+|++.. +..  +.........     ....+.+++
T Consensus        68 ~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~  147 (347)
T 3hfq_A           68 WQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTD  147 (347)
T ss_dssp             EEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEE
T ss_pred             EEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEE
Confidence            5554444444444456778899999999999888877 789999999963 322  2211110000     023478899


Q ss_pred             eCCCCCeEEEEecCCeEEEEeCC-CCceee--EEecccccceeEEEEECCCCCEEEE-eeCCCeEEEEEccC--CeeE--
Q 040370           73 YSSTGGMYVTASKDGAIRLWDGV-SANCVR--SIVGAHGTAEATSANFTKDQRFVLS-CGKDSTVKLWEVSS--GRLV--  144 (228)
Q Consensus        73 ~~~~~~~l~~~~~dg~v~iwd~~-~~~~~~--~~~~~~~~~~i~~~~~~~~~~~l~~-~~~d~~i~~wd~~~--~~~~--  144 (228)
                      |+|+|+++++...++.|.+|++. +++...  .+.... ......++|+|+++++++ ...++.|.+|++..  ++..  
T Consensus       148 ~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~-g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~  226 (347)
T 3hfq_A          148 LTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEA-GFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQL  226 (347)
T ss_dssp             ECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCT-TCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEE
T ss_pred             ECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCC-CCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEe
Confidence            99999966677778999999998 454332  222221 335678999999996665 56788999999874  4432  


Q ss_pred             EEEeccee----eeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCc---ceeEEeecCCCCCcEEEEeCCCCcEEEEecC
Q 040370          145 KQYLGATH----TQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTA---EKVAKWSSNHIGAPRWIEHSPAEAAFITCGT  217 (228)
Q Consensus       145 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~  217 (228)
                      ..+.....    ......++|+|+++++++++..++.|.+|++...   +.+..+ ..+...+..++|+|++++|++++.
T Consensus       227 ~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~-~~~~~~~~~~~~spdg~~l~v~~~  305 (347)
T 3hfq_A          227 GIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQI-STEGDFPRDFDLDPTEAFVVVVNQ  305 (347)
T ss_dssp             EEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEE-ECSSSCCCEEEECTTSSEEEEEET
T ss_pred             eeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEE-ecCCCCcCeEEECCCCCEEEEEEc
Confidence            22221111    1346789999999998777776899999998733   333333 345567889999999998887775


Q ss_pred             -CCCEEEeee
Q 040370          218 -DRSVRFWKE  226 (228)
Q Consensus       218 -dg~i~vwd~  226 (228)
                       ++.|.+|++
T Consensus       306 ~~~~v~v~~~  315 (347)
T 3hfq_A          306 NTDNATLYAR  315 (347)
T ss_dssp             TTTEEEEEEE
T ss_pred             CCCcEEEEEE
Confidence             489999965

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.94  E-value=1.7e-24  Score=168.63  Aligned_cols=194  Identities=12%  Similarity=0.055  Sum_probs=159.2

Q ss_pred             EEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeC--CCCceeeEE
Q 040370           26 SFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDG--VSANCVRSI  103 (228)
Q Consensus        26 ~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~--~~~~~~~~~  103 (228)
                      +++|++..+++++.+++|.+||..+++.+..+...     ..+..++|+|+|+++++++.|+.|.+||+  .+++.+..+
T Consensus       144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g-----~~~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i  218 (543)
T 1nir_A          144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTG-----YAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEI  218 (543)
T ss_dssp             CCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECS-----TTEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEE
T ss_pred             ccCCCCEEEEEEcCCCeEEEEECCCceEEEEEecC-----cccceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEE
Confidence            48899999999999999999999999887766532     23889999999999999999999999999  788888877


Q ss_pred             ecccccceeEEEEECC----CCCEEEEeeC-CCeEEEEEccCCeeEEEEecce--------e-eeeeeEEEECCCCcEEE
Q 040370          104 VGAHGTAEATSANFTK----DQRFVLSCGK-DSTVKLWEVSSGRLVKQYLGAT--------H-TQLRFQAVFNDTEEFVL  169 (228)
Q Consensus       104 ~~~~~~~~i~~~~~~~----~~~~l~~~~~-d~~i~~wd~~~~~~~~~~~~~~--------~-~~~~~~~~~~~~~~~~~  169 (228)
                      ..   ...+..++|+|    +++++++++. +++|.+||..+++.+..+....        + ...+..+.++|++..++
T Consensus       219 ~~---g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~  295 (543)
T 1nir_A          219 KI---GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFI  295 (543)
T ss_dssp             EC---CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEE
T ss_pred             ec---CCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEE
Confidence            64   44679999999    9999998884 8999999999999888876422        1 22567889999988888


Q ss_pred             EeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEe-cCCCCEEEeeec
Q 040370          170 SIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITC-GTDRSVRFWKEI  227 (228)
Q Consensus       170 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~~dg~i~vwd~~  227 (228)
                      ++...++.|.+||..+.+.+......+...+..+.|+|++++|+++ ..+++|.+||+.
T Consensus       296 vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~  354 (543)
T 1nir_A          296 VNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSK  354 (543)
T ss_dssp             EEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETT
T ss_pred             EEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECC
Confidence            8888899999999988765542222456678899999999977655 568999999963

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.94  E-value=6.5e-24  Score=165.34  Aligned_cols=197  Identities=12%  Similarity=0.125  Sum_probs=156.1

Q ss_pred             ceEEEEEeCCCCEEEEecCCCeEEEEEc--ccceEEeeeccceeeeccceeeEEeCC----CCCeEEEEec-CCeEEEEe
Q 040370           21 NVRSVSFHPSGDFLLAGTDHPIAHLYDV--NTFQCYLSANVPEISVNGAINQVRYSS----TGGMYVTASK-DGAIRLWD   93 (228)
Q Consensus        21 ~v~~~~~~~~~~~l~~~~~d~~i~vw~~--~~~~~~~~~~~~~~~~~~~i~~~~~~~----~~~~l~~~~~-dg~v~iwd   93 (228)
                      .+..++|+|++++|++++.|+.|.+||+  .+++.+..+..     ...+..++|+|    +|+++++++. +++|.+||
T Consensus       180 ~~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~-----g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D  254 (543)
T 1nir_A          180 AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKI-----GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMD  254 (543)
T ss_dssp             TEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEEC-----CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEE
T ss_pred             ccceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEec-----CCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEe
Confidence            3899999999999999999999999999  78776665542     45678999999    9999998884 89999999


Q ss_pred             CCCCceeeEEeccc---------ccceeEEEEECCCCC-EEEEeeCCCeEEEEEccCCeeEE--EEecceeeeeeeEEEE
Q 040370           94 GVSANCVRSIVGAH---------GTAEATSANFTKDQR-FVLSCGKDSTVKLWEVSSGRLVK--QYLGATHTQLRFQAVF  161 (228)
Q Consensus        94 ~~~~~~~~~~~~~~---------~~~~i~~~~~~~~~~-~l~~~~~d~~i~~wd~~~~~~~~--~~~~~~~~~~~~~~~~  161 (228)
                      ..+++.+..+....         ....+..+.++|++. ++++...++.|.+||+.+.+.+.  .+.   .......+.|
T Consensus       255 ~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~---~~~~~~~~~~  331 (543)
T 1nir_A          255 GETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIG---AAPFLHDGGW  331 (543)
T ss_dssp             TTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEE---CCSSCCCEEE
T ss_pred             ccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEec---cCcCccCceE
Confidence            99999888876521         133688999999765 56677788999999998866544  222   3445677899


Q ss_pred             CCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecC---CCCCcEEEEeCCC-CcEEEEec-CCCCEEEeee
Q 040370          162 NDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSN---HIGAPRWIEHSPA-EAAFITCG-TDRSVRFWKE  226 (228)
Q Consensus       162 ~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~---~~~~v~~~~~~~~-~~~l~s~~-~dg~i~vwd~  226 (228)
                      +|+++++++++..++.|.+||..+++....+..+   |.+....+ ++|+ +..++++. .|++|.+||+
T Consensus       332 spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~  400 (543)
T 1nir_A          332 DSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGT  400 (543)
T ss_dssp             CTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEEC
T ss_pred             CCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEe
Confidence            9999999888877899999999999988777432   65544444 4676 66777775 6899999986

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.94  E-value=3.2e-24  Score=157.55  Aligned_cols=215  Identities=10%  Similarity=0.091  Sum_probs=154.0

Q ss_pred             CCcCCccccceeEEEeecCcceEEEEEeCCCCEEEEecC-CCeEEEEEcccceE-EeeeccceeeeccceeeEEeCCCCC
Q 040370            1 FFDFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTD-HPIAHLYDVNTFQC-YLSANVPEISVNGAINQVRYSSTGG   78 (228)
Q Consensus         1 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d~~i~vw~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~   78 (228)
                      +||....+...  .+..+...+ +++|+|+++++++++. ++.|.+||+.+++. ......   + ..+..+++|+|+++
T Consensus        24 ~~d~~~~~~~~--~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~---~-~~~~~~~~~s~dg~   96 (331)
T 3u4y_A           24 FFSTDTLEILN--QITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQE---G-QSSMADVDITPDDQ   96 (331)
T ss_dssp             EEETTTCCEEE--EEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEE---C-SSCCCCEEECTTSS
T ss_pred             EEeCcccceee--eEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEeccc---C-CCCccceEECCCCC
Confidence            35655443322  223345566 9999999997766554 88999999998875 333222   1 44444499999999


Q ss_pred             eEEEEecCC---eEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEe-eCCCe-EEEEEccCCeeEEEEe--cce
Q 040370           79 MYVTASKDG---AIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSC-GKDST-VKLWEVSSGRLVKQYL--GAT  151 (228)
Q Consensus        79 ~l~~~~~dg---~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~d~~-i~~wd~~~~~~~~~~~--~~~  151 (228)
                      +++++..++   .|.+||+.+++.+..+...   ....+++|+|++++++++ ..++. |.+|++.....+....  ...
T Consensus        97 ~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~---~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~  173 (331)
T 3u4y_A           97 FAVTVTGLNHPFNMQSYSFLKNKFISTIPIP---YDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFIS  173 (331)
T ss_dssp             EEEECCCSSSSCEEEEEETTTTEEEEEEECC---TTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEEC
T ss_pred             EEEEecCCCCcccEEEEECCCCCeEEEEECC---CCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCcccc
Confidence            998655553   8999999999888777653   345899999999866555 45578 9999987543322111  001


Q ss_pred             eeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcce---eEEeecCCCCCcEEEEeCCCCcEEEEec-CCCCEEEeeec
Q 040370          152 HTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEK---VAKWSSNHIGAPRWIEHSPAEAAFITCG-TDRSVRFWKEI  227 (228)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~s~~-~dg~i~vwd~~  227 (228)
                      .......+.++|+++++++++..++.|.+||+.+++.   +..+.  ....+..++|+|++++|+.++ .++.|.+||+.
T Consensus       174 ~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~--~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~  251 (331)
T 3u4y_A          174 GGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVG--TNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQL  251 (331)
T ss_dssp             SSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEE--CSSCCCCEEECTTSSEEEEECSSEEEEEEEETT
T ss_pred             CCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeecc--CCCCCceEEECCCCCEEEEEEcCCCEEEEEECC
Confidence            2334678899999998888887789999999999887   66663  346778999999999766554 57889999863

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.94  E-value=5.9e-24  Score=156.20  Aligned_cols=197  Identities=10%  Similarity=0.059  Sum_probs=152.9

Q ss_pred             ceEEEEEeCCCCEE-EEecCCCeEEEEEcccceEEeeeccce-eeeccceeeEEeCCCCCeEEEEe------------cC
Q 040370           21 NVRSVSFHPSGDFL-LAGTDHPIAHLYDVNTFQCYLSANVPE-ISVNGAINQVRYSSTGGMYVTAS------------KD   86 (228)
Q Consensus        21 ~v~~~~~~~~~~~l-~~~~~d~~i~vw~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~------------~d   86 (228)
                      .+..++|+|+++++ +++..++.|.+||+.+++......... ..+...+..++|+|+++++++++            .+
T Consensus        35 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~  114 (337)
T 1pby_B           35 TPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQP  114 (337)
T ss_dssp             CCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECC
T ss_pred             CccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccC
Confidence            58899999999766 456668899999999988765554321 00123678899999999888886            57


Q ss_pred             CeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecce---------------
Q 040370           87 GAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGAT---------------  151 (228)
Q Consensus        87 g~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~---------------  151 (228)
                      +.|.+||+.+++....+..   ...+.+++|+|++++++++  ++.|++||+.+++....+....               
T Consensus       115 ~~i~v~d~~~~~~~~~~~~---~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~  189 (337)
T 1pby_B          115 TRVALYDAETLSRRKAFEA---PRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVW  189 (337)
T ss_dssp             CEEEEEETTTTEEEEEEEC---CSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCC
T ss_pred             ceEEEEECCCCcEEEEEeC---CCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeeeccccCCCceeCCCccEEe
Confidence            9999999998888777765   3456788999999988887  6889999998887665443211               


Q ss_pred             -------------------------------------------------eeeeeeEEEECCCCcEEEEeeCCCCeEEEEE
Q 040370          152 -------------------------------------------------HTQLRFQAVFNDTEEFVLSIDEPSNEIVIWD  182 (228)
Q Consensus       152 -------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d  182 (228)
                                                                       +......+.++|++++++++   ++.|.+||
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~---~~~v~~~d  266 (337)
T 1pby_B          190 NQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA---YNVLESFD  266 (337)
T ss_dssp             CCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE---ESEEEEEE
T ss_pred             eeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe---CCeEEEEE
Confidence                                                             00122357899999998886   58999999


Q ss_pred             cCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370          183 ALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEI  227 (228)
Q Consensus       183 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~  227 (228)
                      +.+++....+.  ....+.+++|+|++++|++++.++.|.+||+.
T Consensus       267 ~~~~~~~~~~~--~~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~  309 (337)
T 1pby_B          267 LEKNASIKRVP--LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAE  309 (337)
T ss_dssp             TTTTEEEEEEE--CSSCCCEEEECTTSCEEEEESBSSEEEEEETT
T ss_pred             CCCCcCcceec--CCCceeeEEECCCCCEEEEEcCCCcEEEEECc
Confidence            99988877763  23467899999999999999999999999963

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.94  E-value=1.7e-23  Score=154.79  Aligned_cols=206  Identities=10%  Similarity=0.074  Sum_probs=160.1

Q ss_pred             ecCcceEEEEEeCCCCEEE-EecCCCeEEEEEcccceEEeeeccceeee-----ccceeeEEeCCCCCeEEEEe--cCCe
Q 040370           17 QDTHNVRSVSFHPSGDFLL-AGTDHPIAHLYDVNTFQCYLSANVPEISV-----NGAINQVRYSSTGGMYVTAS--KDGA   88 (228)
Q Consensus        17 ~~~~~v~~~~~~~~~~~l~-~~~~d~~i~vw~~~~~~~~~~~~~~~~~~-----~~~i~~~~~~~~~~~l~~~~--~dg~   88 (228)
                      .....+..++|+|++++++ +...++.|.+||..+++............     ...+.+++|+|+++++++++  .++.
T Consensus        86 ~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~  165 (353)
T 3vgz_A           86 HNDLKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESV  165 (353)
T ss_dssp             EESSCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCE
T ss_pred             ecCCCcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCce
Confidence            3455688999999999655 55667999999999988766655432110     01268899999999877766  4789


Q ss_pred             EEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecce--eeeeeeEEEECCCCc
Q 040370           89 IRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGAT--HTQLRFQAVFNDTEE  166 (228)
Q Consensus        89 v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~  166 (228)
                      |.+||+.+++....+...  ...+.+++|+|+++++++++.++.|.+||+.+++....+....  +......+.++|+++
T Consensus       166 i~~~d~~~~~~~~~~~~~--~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~  243 (353)
T 3vgz_A          166 IWVVDGGNIKLKTAIQNT--GKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQ  243 (353)
T ss_dssp             EEEEETTTTEEEEEECCC--CTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTT
T ss_pred             EEEEcCCCCceEEEecCC--CCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCC
Confidence            999999999888877633  3457789999999999999999999999999998887765421  233466789999999


Q ss_pred             EEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEE-EecCCCCEEEeeec
Q 040370          167 FVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFI-TCGTDRSVRFWKEI  227 (228)
Q Consensus       167 ~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-s~~~dg~i~vwd~~  227 (228)
                      ++++++..++.|.+||..+++....+..+.   ...++|+|++++++ +...++.|.+||+.
T Consensus       244 ~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~---~~~~~~s~dg~~l~v~~~~~~~v~~~d~~  302 (353)
T 3vgz_A          244 RAFITDSKAAEVLVVDTRNGNILAKVAAPE---SLAVLFNPARNEAYVTHRQAGKVSVIDAK  302 (353)
T ss_dssp             EEEEEESSSSEEEEEETTTCCEEEEEECSS---CCCEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             EEEEEeCCCCEEEEEECCCCcEEEEEEcCC---CceEEECCCCCEEEEEECCCCeEEEEECC
Confidence            988888777999999999999887774332   25699999998555 44579999999963

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.93  E-value=1.1e-23  Score=154.72  Aligned_cols=217  Identities=10%  Similarity=0.125  Sum_probs=151.3

Q ss_pred             CcCCccccceeEEEeecCcceEEEEEeCCCCEEEEecCCC---eEEEEEcccceEEeeeccceeeeccceeeEEeCCCCC
Q 040370            2 FDFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHP---IAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGG   78 (228)
Q Consensus         2 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~---~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~   78 (228)
                      ||...... ....+..+..+..+++|+|++++++++..++   .|.+||+.+++.......     .....+++|+|+|+
T Consensus        67 ~d~~~~~~-~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~-----~~~~~~~~~spdg~  140 (331)
T 3u4y_A           67 IETQLEPP-KVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPI-----PYDAVGIAISPNGN  140 (331)
T ss_dssp             EECSSSSC-EEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEEC-----CTTEEEEEECTTSS
T ss_pred             EECCCCce-eEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEEC-----CCCccceEECCCCC
Confidence            45543332 1333334555555599999999999665553   899999999887665432     34568999999998


Q ss_pred             eEEEE-ecCCe-EEEEeCCCCceeeEE--ecccccceeEEEEECCCCCEEEE-eeCCCeEEEEEccCCee---EEEEecc
Q 040370           79 MYVTA-SKDGA-IRLWDGVSANCVRSI--VGAHGTAEATSANFTKDQRFVLS-CGKDSTVKLWEVSSGRL---VKQYLGA  150 (228)
Q Consensus        79 ~l~~~-~~dg~-v~iwd~~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~l~~-~~~d~~i~~wd~~~~~~---~~~~~~~  150 (228)
                      +++++ ..++. +.+|++.....+...  ...........++|+|++++++. +..++.|++||+.+++.   +..+.. 
T Consensus       141 ~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~-  219 (331)
T 3u4y_A          141 GLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGT-  219 (331)
T ss_dssp             CEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEEC-
T ss_pred             EEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccC-
Confidence            66555 55578 999998764433111  10011345789999999996655 44688999999998887   665553 


Q ss_pred             eeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcce--eEEeecC---CCC---CcEEEEeCCCCcEEEEe-cCCCCE
Q 040370          151 THTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEK--VAKWSSN---HIG---APRWIEHSPAEAAFITC-GTDRSV  221 (228)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~--~~~~~~~---~~~---~v~~~~~~~~~~~l~s~-~~dg~i  221 (228)
                        ......+.|+|++++++++...++.|.+||..+++.  +..+...   +..   ....++|+|++++|+++ ..++.|
T Consensus       220 --~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v  297 (331)
T 3u4y_A          220 --NNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISREL  297 (331)
T ss_dssp             --SSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEE
T ss_pred             --CCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcE
Confidence              355678899999998888777678999999998876  3333211   122   23558999999987655 456799


Q ss_pred             EEeeec
Q 040370          222 RFWKEI  227 (228)
Q Consensus       222 ~vwd~~  227 (228)
                      .+||+.
T Consensus       298 ~v~d~~  303 (331)
T 3u4y_A          298 KVFTIS  303 (331)
T ss_dssp             EEEETT
T ss_pred             EEEEec
Confidence            999963

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.93  E-value=4e-23  Score=152.74  Aligned_cols=209  Identities=11%  Similarity=0.061  Sum_probs=145.3

Q ss_pred             EEeecCcceEEEEEeCCCCEEEEecC---CCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEe-cCCeE
Q 040370           14 RVIQDTHNVRSVSFHPSGDFLLAGTD---HPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTAS-KDGAI   89 (228)
Q Consensus        14 ~~~~~~~~v~~~~~~~~~~~l~~~~~---d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~v   89 (228)
                      ....+...+..++|+|+++ |++++.   ++.|.+|++.+++...... ...+ ...+..++|+|++++|++++ .++.+
T Consensus        34 ~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~-~~~~-~~~p~~~a~spdg~~l~~~~~~~~~v  110 (347)
T 3hfq_A           34 GLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNT-VVAP-GTPPAYVAVDEARQLVYSANYHKGTA  110 (347)
T ss_dssp             EEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEE-EEEE-SCCCSEEEEETTTTEEEEEETTTTEE
T ss_pred             eeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeee-eecC-CCCCEEEEECCCCCEEEEEeCCCCEE
Confidence            4455667888999999999 555443   6899999998776432221 1122 56789999999999888887 78999


Q ss_pred             EEEeCCC-Cc--eeeEEeccc-------ccceeEEEEECCCCCEEEEeeCCCeEEEEEcc-CCeeEEE--Eecceeeeee
Q 040370           90 RLWDGVS-AN--CVRSIVGAH-------GTAEATSANFTKDQRFVLSCGKDSTVKLWEVS-SGRLVKQ--YLGATHTQLR  156 (228)
Q Consensus        90 ~iwd~~~-~~--~~~~~~~~~-------~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~-~~~~~~~--~~~~~~~~~~  156 (228)
                      .+|++.. +.  .+..+....       ....+.+++|+|+++.+++...++.|++||+. +++....  +... .....
T Consensus       111 ~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~-~g~~p  189 (347)
T 3hfq_A          111 EVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTME-AGFGP  189 (347)
T ss_dssp             EEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECC-TTCCE
T ss_pred             EEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcC-CCCCC
Confidence            9999963 32  222222210       11247889999999966666678899999998 4543221  1111 12245


Q ss_pred             eEEEECCCCcEEEEeeCCCCeEEEEEcCC--ccee--EEeecCCC------CCcEEEEeCCCCcEE-EEecCCCCEEEee
Q 040370          157 FQAVFNDTEEFVLSIDEPSNEIVIWDALT--AEKV--AKWSSNHI------GAPRWIEHSPAEAAF-ITCGTDRSVRFWK  225 (228)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~d~~i~i~d~~~--~~~~--~~~~~~~~------~~v~~~~~~~~~~~l-~s~~~dg~i~vwd  225 (228)
                      ..+.|+|+++++++++..++.+.+|++..  ++..  ... ....      ..+..++|+|+|++| ++...++.|.+|+
T Consensus       190 ~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~  268 (347)
T 3hfq_A          190 RHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIV-KTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFA  268 (347)
T ss_dssp             EEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEE-ESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEE
T ss_pred             ceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeee-eecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEE
Confidence            56899999998888877789999999874  4321  222 1111      458889999999977 5556789999999


Q ss_pred             ec
Q 040370          226 EI  227 (228)
Q Consensus       226 ~~  227 (228)
                      +.
T Consensus       269 ~~  270 (347)
T 3hfq_A          269 VT  270 (347)
T ss_dssp             EC
T ss_pred             EC
Confidence            73

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.93  E-value=1.7e-22  Score=149.52  Aligned_cols=187  Identities=9%  Similarity=0.098  Sum_probs=151.2

Q ss_pred             eEEEEEeCCCCEEEEec--CCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCCCce
Q 040370           22 VRSVSFHPSGDFLLAGT--DHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANC   99 (228)
Q Consensus        22 v~~~~~~~~~~~l~~~~--~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~   99 (228)
                      +.+++|+|+++++++++  .++.|.+||..+++........    ...+.+++|+|+++.+++++.++.|.+||+.+++.
T Consensus       143 ~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~----~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~  218 (353)
T 3vgz_A          143 PRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNT----GKMSTGLALDSEGKRLYTTNADGELITIDTADNKI  218 (353)
T ss_dssp             EEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCC----CTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEE
T ss_pred             CceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCC----CCccceEEECCCCCEEEEEcCCCeEEEEECCCCeE
Confidence            78999999999887765  5789999999998877665422    44578899999999999999999999999999988


Q ss_pred             eeEEeccc--ccceeEEEEECCCCCEEEEeeC-CCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCC
Q 040370          100 VRSIVGAH--GTAEATSANFTKDQRFVLSCGK-DSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSN  176 (228)
Q Consensus       100 ~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~-d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  176 (228)
                      ...+....  ....+..++|+|+++++++++. ++.|.+||+.+++.+..+....    ...+.++|+++++++++..++
T Consensus       219 ~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~----~~~~~~s~dg~~l~v~~~~~~  294 (353)
T 3vgz_A          219 LSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPE----SLAVLFNPARNEAYVTHRQAG  294 (353)
T ss_dssp             EEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSS----CCCEEEETTTTEEEEEETTTT
T ss_pred             EEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCC----CceEEECCCCCEEEEEECCCC
Confidence            87776521  1445788999999997776665 4899999999998887776422    256889999998888887789


Q ss_pred             eEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCC
Q 040370          177 EIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTD  218 (228)
Q Consensus       177 ~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d  218 (228)
                      .|.+||..+++....+.  ....+.+++|+|++++|+.+..+
T Consensus       295 ~v~~~d~~~~~~~~~~~--~~~~~~~~~~s~dg~~l~v~~~~  334 (353)
T 3vgz_A          295 KVSVIDAKSYKVVKTFD--TPTHPNSLALSADGKTLYVSVKQ  334 (353)
T ss_dssp             EEEEEETTTTEEEEEEE--CCSEEEEEEECTTSCEEEEEEEC
T ss_pred             eEEEEECCCCeEEEEEe--cCCCCCeEEEcCCCCEEEEEEcc
Confidence            99999999998887763  23478999999999977666554

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.93  E-value=1.1e-24  Score=175.95  Aligned_cols=199  Identities=10%  Similarity=0.044  Sum_probs=150.5

Q ss_pred             ceEEEEEeCCCCEEEEecCCCeEEEEEcccc---eEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCCC
Q 040370           21 NVRSVSFHPSGDFLLAGTDHPIAHLYDVNTF---QCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSA   97 (228)
Q Consensus        21 ~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~---~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~   97 (228)
                      .|.+++|+|||++|++++. +.|++||+.++   +... +.   .+ ...+..++|+|+|++|+.++ ++.|++||+.++
T Consensus       110 ~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~-l~---~~-~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g  182 (741)
T 2ecf_A          110 GIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQ-LT---HG-EGFATDAKLSPKGGFVSFIR-GRNLWVIDLASG  182 (741)
T ss_dssp             ESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCB-CC---CS-SSCEEEEEECTTSSEEEEEE-TTEEEEEETTTT
T ss_pred             CcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEE-cc---cC-CcccccccCCCCCCEEEEEe-CCcEEEEecCCC
Confidence            4889999999999999886 89999999987   4322 21   12 56799999999999999887 469999999887


Q ss_pred             ceeeEEeccccc--------------ceeEEEEECCCCCEEEEeeCCC--------------------------------
Q 040370           98 NCVRSIVGAHGT--------------AEATSANFTKDQRFVLSCGKDS--------------------------------  131 (228)
Q Consensus        98 ~~~~~~~~~~~~--------------~~i~~~~~~~~~~~l~~~~~d~--------------------------------  131 (228)
                      +.......+...              ..+..+.|+|||++|++++.|+                                
T Consensus       183 ~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~  262 (741)
T 2ecf_A          183 RQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQ  262 (741)
T ss_dssp             EEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCE
T ss_pred             CEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCe
Confidence            765443332100              0146799999999999988765                                


Q ss_pred             -eEEEEEccC-CeeEEEEecceeeeeeeEEEECCCCcEEEEeeC----CCCeEEEEEcCCcceeEEeecCCCC---CcEE
Q 040370          132 -TVKLWEVSS-GRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDE----PSNEIVIWDALTAEKVAKWSSNHIG---APRW  202 (228)
Q Consensus       132 -~i~~wd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~d~~i~i~d~~~~~~~~~~~~~~~~---~v~~  202 (228)
                       .|++||+.+ ++.........+...+..+.| |+++.++++..    .+..|++||+.+++....+......   .+..
T Consensus       263 ~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~  341 (741)
T 2ecf_A          263 VKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNS  341 (741)
T ss_dssp             EEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSC
T ss_pred             eEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCc
Confidence             789999988 765443322235667888999 99999887653    3578999999998876655322222   4568


Q ss_pred             EEeCCCCcEEEEecCCCCEEEeeec
Q 040370          203 IEHSPAEAAFITCGTDRSVRFWKEI  227 (228)
Q Consensus       203 ~~~~~~~~~l~s~~~dg~i~vwd~~  227 (228)
                      ++|+|+|+++++++.||.++||.+.
T Consensus       342 ~~~spdg~~~~~~~~~g~~~l~~~~  366 (741)
T 2ecf_A          342 LRFLDDGSILWSSERTGFQHLYRID  366 (741)
T ss_dssp             CEECTTSCEEEEECTTSSCEEEEEC
T ss_pred             eEECCCCeEEEEecCCCccEEEEEc
Confidence            9999999999999999988888753

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.93  E-value=1.7e-23  Score=154.55  Aligned_cols=196  Identities=10%  Similarity=0.086  Sum_probs=146.1

Q ss_pred             ceEEEEEeCCCCEEE-EecCCCeEEEEEcccceEEeeecccee--eeccceeeEEeCCCCCeEEEEecC-----------
Q 040370           21 NVRSVSFHPSGDFLL-AGTDHPIAHLYDVNTFQCYLSANVPEI--SVNGAINQVRYSSTGGMYVTASKD-----------   86 (228)
Q Consensus        21 ~v~~~~~~~~~~~l~-~~~~d~~i~vw~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~d-----------   86 (228)
                      .+..++|+|++++++ ++..++.|.+||+.+++..........  .....+..++|+|+|+++++++.+           
T Consensus        44 ~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~  123 (349)
T 1jmx_B           44 GPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVK  123 (349)
T ss_dssp             SSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEEC
T ss_pred             CCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccC
Confidence            678999999998665 556789999999999887655543210  002237899999999999998865           


Q ss_pred             -CeEEEEeCCCCcee---eEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecce-----------
Q 040370           87 -GAIRLWDGVSANCV---RSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGAT-----------  151 (228)
Q Consensus        87 -g~v~iwd~~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~-----------  151 (228)
                       +.|.+||+.+++..   ..+..   ...+.+++|+|+++ +++++.  .|++||+.+++....+....           
T Consensus       124 ~~~i~~~d~~~~~~~~~~~~~~~---~~~~~~~~~s~dg~-l~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~  197 (349)
T 1jmx_B          124 PPRLEVFSTADGLEAKPVRTFPM---PRQVYLMRAADDGS-LYVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDV  197 (349)
T ss_dssp             CCEEEEEEGGGGGGBCCSEEEEC---CSSCCCEEECTTSC-EEEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBC
T ss_pred             CCeEEEEECCCccccceeeeccC---CCcccceeECCCCc-EEEccC--cEEEEeCCCCceeccccccccCCccccCccc
Confidence             89999999885433   33332   33578899999999 555543  49999999888766554221           


Q ss_pred             --------------e-----------------------------------------eeeeeEEEECC-CCcEEEEeeCCC
Q 040370          152 --------------H-----------------------------------------TQLRFQAVFND-TEEFVLSIDEPS  175 (228)
Q Consensus       152 --------------~-----------------------------------------~~~~~~~~~~~-~~~~~~~~~~~d  175 (228)
                                    .                                         ......+.++| ++++++++   +
T Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~---~  274 (349)
T 1jmx_B          198 LYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV---L  274 (349)
T ss_dssp             CCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE---E
T ss_pred             eeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE---c
Confidence                          0                                         00234556778 99988886   5


Q ss_pred             CeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370          176 NEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEI  227 (228)
Q Consensus       176 ~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~  227 (228)
                      +.|.+||+.+++....+..  ...+.+++|+|++++|++++.++.|.+||+.
T Consensus       275 ~~v~~~d~~~~~~~~~~~~--~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~  324 (349)
T 1jmx_B          275 NRLAKYDLKQRKLIKAANL--DHTYYCVAFDKKGDKLYLGGTFNDLAVFNPD  324 (349)
T ss_dssp             SEEEEEETTTTEEEEEEEC--SSCCCEEEECSSSSCEEEESBSSEEEEEETT
T ss_pred             CeEEEEECccCeEEEEEcC--CCCccceEECCCCCEEEEecCCCeEEEEecc
Confidence            8999999999988777632  3457899999999989888889999999963

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.92  E-value=1.3e-23  Score=169.29  Aligned_cols=220  Identities=9%  Similarity=0.063  Sum_probs=155.2

Q ss_pred             CCcCCccccceeEEEeecCc---ceEEEEEeCCCCEEEEecCC---------CeEEEEEcccceEEeeeccceeeeccce
Q 040370            1 FFDFSKATAKRAFRVIQDTH---NVRSVSFHPSGDFLLAGTDH---------PIAHLYDVNTFQCYLSANVPEISVNGAI   68 (228)
Q Consensus         1 iwd~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~l~~~~~d---------~~i~vw~~~~~~~~~~~~~~~~~~~~~i   68 (228)
                      +||.......  ..+..|..   .|.+++|+|||++|++++.+         +.+.+||+.+++.. .+.....+ ...+
T Consensus        41 ~~d~~~g~~~--~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~-~~~~  116 (723)
T 1xfd_A           41 LWNVETNTST--VLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQ-SLDPPEVS-NAKL  116 (723)
T ss_dssp             EBCGGGCCCE--EEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCE-ECCCTTCC-SCCC
T ss_pred             EEECCCCcEE--EEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceE-eccCCccc-cccc
Confidence            4666644332  22223443   49999999999999998764         78899999988752 22222222 4458


Q ss_pred             eeEEeCCCCCeEEEEecCCeEEEEeCCCCceeeEEecccccc----------------eeEEEEECCCCCEEEEeeCCC-
Q 040370           69 NQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTA----------------EATSANFTKDQRFVLSCGKDS-  131 (228)
Q Consensus        69 ~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~----------------~i~~~~~~~~~~~l~~~~~d~-  131 (228)
                      ..++|+|+|+.|+.++. +.|++||+.+++..+....+....                .+.+++|+|||++|++++.|+ 
T Consensus       117 ~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~  195 (723)
T 1xfd_A          117 QYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDS  195 (723)
T ss_dssp             SBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECT
T ss_pred             cccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCC
Confidence            89999999999999886 799999999887766554432111                237899999999999887553 


Q ss_pred             ---------------------------------eEEEEEccCCeeEEEEecce----eeeeeeEEEECCCCcEEEEeeC-
Q 040370          132 ---------------------------------TVKLWEVSSGRLVKQYLGAT----HTQLRFQAVFNDTEEFVLSIDE-  173 (228)
Q Consensus       132 ---------------------------------~i~~wd~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~-  173 (228)
                                                       .|++||+.+++....+..+.    +...+..+.|+|+++.+++... 
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~  275 (723)
T 1xfd_A          196 RVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNR  275 (723)
T ss_dssp             TSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEET
T ss_pred             ccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcC
Confidence                                             79999998887545554321    2456788999999998866543 


Q ss_pred             --CCCeEEEEEcCCcceeEEeecCCCCCcE----EEEeCCCCcEEEE--ecCCC------CEEEee
Q 040370          174 --PSNEIVIWDALTAEKVAKWSSNHIGAPR----WIEHSPAEAAFIT--CGTDR------SVRFWK  225 (228)
Q Consensus       174 --~d~~i~i~d~~~~~~~~~~~~~~~~~v~----~~~~~~~~~~l~s--~~~dg------~i~vwd  225 (228)
                        .+..|++||+.+++........+...+.    .++|+|+|+.|+.  +..++      .|.+||
T Consensus       276 ~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d  341 (723)
T 1xfd_A          276 AQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSS  341 (723)
T ss_dssp             TSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEEC
T ss_pred             CCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEe
Confidence              2468999999998876655333444443    7899999997775  45667      456665

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.92  E-value=2.9e-23  Score=166.84  Aligned_cols=219  Identities=11%  Similarity=0.103  Sum_probs=153.1

Q ss_pred             CCcCCccccceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEccc-----ceEEeeeccceeee----------c
Q 040370            1 FFDFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNT-----FQCYLSANVPEISV----------N   65 (228)
Q Consensus         1 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~-----~~~~~~~~~~~~~~----------~   65 (228)
                      +||+...   +...+..+...+.+++|+|+|++|+.+ .++.|++|++.+     ++............          .
T Consensus       105 ~~d~~~~---~~~~l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~  180 (706)
T 2z3z_A          105 GFDMLAR---KVTYLFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREF  180 (706)
T ss_dssp             EEETTTT---EEEEEECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCT
T ss_pred             EEECCCC---ceEEccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhc
Confidence            3666533   344555677889999999999999985 579999999998     76544322211000          0


Q ss_pred             cceeeEEeCCCCCeEEEEe---------------------------------cCCeEEEEeCCCCceeeEEeccccccee
Q 040370           66 GAINQVRYSSTGGMYVTAS---------------------------------KDGAIRLWDGVSANCVRSIVGAHGTAEA  112 (228)
Q Consensus        66 ~~i~~~~~~~~~~~l~~~~---------------------------------~dg~v~iwd~~~~~~~~~~~~~~~~~~i  112 (228)
                      ..+.++.|+|+|++|++++                                 .+..|.+||+.+++.........+...+
T Consensus       181 ~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~  260 (706)
T 2z3z_A          181 GIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFL  260 (706)
T ss_dssp             TCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEE
T ss_pred             CCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeE
Confidence            1258999999999999987                                 4467999999988765443322235678


Q ss_pred             EEEEECCCCCEEEEeeCCC-----eEEEEEccCCeeEEEEecceeee---eeeEEEECC--CCcEEEEeeCCCCeEEEEE
Q 040370          113 TSANFTKDQRFVLSCGKDS-----TVKLWEVSSGRLVKQYLGATHTQ---LRFQAVFND--TEEFVLSIDEPSNEIVIWD  182 (228)
Q Consensus       113 ~~~~~~~~~~~l~~~~~d~-----~i~~wd~~~~~~~~~~~~~~~~~---~~~~~~~~~--~~~~~~~~~~~d~~i~i~d  182 (228)
                      .+++|+||+++|++++.++     .|++||+.+++....+.......   .+..+.|+|  ++++++++ ..|+.+++|+
T Consensus       261 ~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~-~~~g~~~l~~  339 (706)
T 2z3z_A          261 TNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQS-RRDGWNHLYL  339 (706)
T ss_dssp             EEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEE-CTTSSCEEEE
T ss_pred             eeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEE-ccCCccEEEE
Confidence            9999999999999988776     89999999884443333211221   235678999  99877665 4478899998


Q ss_pred             cC-CcceeEEeecCCCCCcEE-EEeCCCCcEEEEecC-CC--CEEEee
Q 040370          183 AL-TAEKVAKWSSNHIGAPRW-IEHSPAEAAFITCGT-DR--SVRFWK  225 (228)
Q Consensus       183 ~~-~~~~~~~~~~~~~~~v~~-~~~~~~~~~l~s~~~-dg--~i~vwd  225 (228)
                      +. ++.....+ ..+...+.. ++|+|+++.|+.++. ++  .+.||.
T Consensus       340 ~~~~~~~~~~l-~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~  386 (706)
T 2z3z_A          340 YDTTGRLIRQV-TKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYC  386 (706)
T ss_dssp             EETTSCEEEEC-CCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEE
T ss_pred             EECCCCEEEec-CCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEE
Confidence            76 55656555 566777776 799999987765554 44  244544

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.92  E-value=1.6e-23  Score=168.40  Aligned_cols=199  Identities=9%  Similarity=0.059  Sum_probs=148.8

Q ss_pred             cceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCC---
Q 040370           20 HNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVS---   96 (228)
Q Consensus        20 ~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~---   96 (228)
                      ..|.+++|+|+ +.++.+. ++.|++||+.+++.......     ...+.+++|+|+|+.|+++ .|+.|++||+.+   
T Consensus        82 ~~v~~~~~spd-~~~~~~~-~~~i~~~d~~~~~~~~l~~~-----~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~  153 (706)
T 2z3z_A           82 FPSFRTLDAGR-GLVVLFT-QGGLVGFDMLARKVTYLFDT-----NEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGE  153 (706)
T ss_dssp             CCCEEEEETTT-TEEEEEE-TTEEEEEETTTTEEEEEECC-----TTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTS
T ss_pred             cCceeEEECCC-CeEEEEE-CCEEEEEECCCCceEEccCC-----cccccCCcCCCCCCEEEEE-ECCeEEEEecCcccc
Confidence            56999999999 6666554 59999999998875443221     5678899999999999885 689999999988   


Q ss_pred             --CceeeEEecccccc-------------eeEEEEECCCCCEEEEee---------------------------------
Q 040370           97 --ANCVRSIVGAHGTA-------------EATSANFTKDQRFVLSCG---------------------------------  128 (228)
Q Consensus        97 --~~~~~~~~~~~~~~-------------~i~~~~~~~~~~~l~~~~---------------------------------  128 (228)
                        ++......... ..             .+.++.|+|||++|++++                                 
T Consensus       154 ~~g~~~~~~~~~~-~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~  232 (706)
T 2z3z_A          154 GMSRAIAVTIDGT-ETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPS  232 (706)
T ss_dssp             CCCCCEESCSCCB-TTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCC
T ss_pred             cCCCcEEeccCCC-CCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCC
Confidence              76554333321 11             147899999999999987                                 


Q ss_pred             CCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCC----CeEEEEEcCCcceeEEee-cCCCC---Cc
Q 040370          129 KDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPS----NEIVIWDALTAEKVAKWS-SNHIG---AP  200 (228)
Q Consensus       129 ~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d----~~i~i~d~~~~~~~~~~~-~~~~~---~v  200 (228)
                      .+..|++||+.+++.........+...+..+.|+|+++.++++....    ..|++||..+++....+. ..+..   .+
T Consensus       233 ~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~  312 (706)
T 2z3z_A          233 HHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPL  312 (706)
T ss_dssp             CEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCC
T ss_pred             CeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECcc
Confidence            44679999999887655443323456778999999999888865521    389999999884433332 12222   34


Q ss_pred             EEEEeCC--CCcEEEEecCCCCEEEeeec
Q 040370          201 RWIEHSP--AEAAFITCGTDRSVRFWKEI  227 (228)
Q Consensus       201 ~~~~~~~--~~~~l~s~~~dg~i~vwd~~  227 (228)
                      ..++|+|  +++++++++.||.+++|++.
T Consensus       313 ~~~~~sp~~dg~~l~~~~~~g~~~l~~~~  341 (706)
T 2z3z_A          313 HPLTFLPGSNNQFIWQSRRDGWNHLYLYD  341 (706)
T ss_dssp             SCCEECTTCSSEEEEEECTTSSCEEEEEE
T ss_pred             CCceeecCCCCEEEEEEccCCccEEEEEE
Confidence            6789999  99999999999999999763

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.91  E-value=1.6e-22  Score=163.32  Aligned_cols=221  Identities=9%  Similarity=0.041  Sum_probs=155.2

Q ss_pred             CCcCCccccceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeee------------ccce
Q 040370            1 FFDFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISV------------NGAI   68 (228)
Q Consensus         1 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~------------~~~i   68 (228)
                      +||+..........+..|...+.+++|+|||++|+.++. +.|++||+.+++............            ...+
T Consensus       133 ~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~-~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~  211 (741)
T 2ecf_A          133 LYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRG-RNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRH  211 (741)
T ss_dssp             EEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEET-TEEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCC
T ss_pred             EEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEeC-CcEEEEecCCCCEEEeccCCccceeccccceeeeeccccc
Confidence            356654411133345567888999999999999998874 689999999887654332211000            0125


Q ss_pred             eeEEeCCCCCeEEEEecCC---------------------------------eEEEEeCCC-CceeeEEecccccceeEE
Q 040370           69 NQVRYSSTGGMYVTASKDG---------------------------------AIRLWDGVS-ANCVRSIVGAHGTAEATS  114 (228)
Q Consensus        69 ~~~~~~~~~~~l~~~~~dg---------------------------------~v~iwd~~~-~~~~~~~~~~~~~~~i~~  114 (228)
                      ..++|+|+|++|++++.|+                                 .|.+||+.+ ++.........+...+..
T Consensus       212 ~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~  291 (741)
T 2ecf_A          212 TGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLAR  291 (741)
T ss_dssp             CSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEE
T ss_pred             cceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCceEEecCCCCcceEEEE
Confidence            7899999999999988766                                 899999988 775544332123678899


Q ss_pred             EEECCCCCEEEEeeC-----CCeEEEEEccCCeeEEEEecceeee---eeeEEEECCCCcEEEEeeCCCCeEEEEEcC-C
Q 040370          115 ANFTKDQRFVLSCGK-----DSTVKLWEVSSGRLVKQYLGATHTQ---LRFQAVFNDTEEFVLSIDEPSNEIVIWDAL-T  185 (228)
Q Consensus       115 ~~~~~~~~~l~~~~~-----d~~i~~wd~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~-~  185 (228)
                      ++| ||+++|++++.     +..|++||+.+++....+..+. ..   .+..+.|+|+++++++ +..|+.+++|.+. +
T Consensus       292 ~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~-~~~~~~~~~~~~spdg~~~~~-~~~~g~~~l~~~~~~  368 (741)
T 2ecf_A          292 VNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETS-PTWVPLHNSLRFLDDGSILWS-SERTGFQHLYRIDSK  368 (741)
T ss_dssp             EEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEEC-SSCCCCCSCCEECTTSCEEEE-ECTTSSCEEEEECSS
T ss_pred             EEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCC-CCcCCcCCceEECCCCeEEEE-ecCCCccEEEEEcCC
Confidence            999 99999987654     5679999999988766654321 11   3357889999996555 4557877787765 3


Q ss_pred             cceeEEeecCCCCCcEEE-EeCCCCcEEE-EecCCC--CEEEeeec
Q 040370          186 AEKVAKWSSNHIGAPRWI-EHSPAEAAFI-TCGTDR--SVRFWKEI  227 (228)
Q Consensus       186 ~~~~~~~~~~~~~~v~~~-~~~~~~~~l~-s~~~dg--~i~vwd~~  227 (228)
                      ++ ...+ ..|...+..+ .|+|+++.|+ +++.++  .+++|++.
T Consensus       369 ~~-~~~l-~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~  412 (741)
T 2ecf_A          369 GK-AAAL-THGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVP  412 (741)
T ss_dssp             SC-EEES-CCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEE
T ss_pred             CC-eeee-eecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEE
Confidence            44 4444 5677778887 5999998775 455555  89999864

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.91  E-value=1.2e-22  Score=146.39  Aligned_cols=191  Identities=10%  Similarity=0.110  Sum_probs=139.3

Q ss_pred             CcceEEEEEeCCCCEEEEec--CCCeEEEEEc--ccceEEeeeccceeeeccceeeEEeCCCCCeEE-EEecCCeEEEEe
Q 040370           19 THNVRSVSFHPSGDFLLAGT--DHPIAHLYDV--NTFQCYLSANVPEISVNGAINQVRYSSTGGMYV-TASKDGAIRLWD   93 (228)
Q Consensus        19 ~~~v~~~~~~~~~~~l~~~~--~d~~i~vw~~--~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~dg~v~iwd   93 (228)
                      ...+.+++|+|++++|++++  .++...||.+  .+++.. .+..     ...+..++|+|+++.++ +++.++.+++|+
T Consensus        84 ~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~-~~~~-----~~~~~~~~~spdg~~l~~~~~~~~~~~l~~  157 (297)
T 2ojh_A           84 TICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGTPR-LMTK-----NLPSYWHGWSPDGKSFTYCGIRDQVFDIYS  157 (297)
T ss_dssp             CCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCCCE-ECCS-----SSSEEEEEECTTSSEEEEEEEETTEEEEEE
T ss_pred             cccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCceE-Eeec-----CCCccceEECCCCCEEEEEECCCCceEEEE
Confidence            36789999999999999988  3344555554  444422 1111     33488899999999877 788899999998


Q ss_pred             CCC-CceeeEEecccccceeEEEEECCCCCEEEEee-CCCeEEEEEcc-CCeeEEEEecceeeeeeeEEEECCCCcEEEE
Q 040370           94 GVS-ANCVRSIVGAHGTAEATSANFTKDQRFVLSCG-KDSTVKLWEVS-SGRLVKQYLGATHTQLRFQAVFNDTEEFVLS  170 (228)
Q Consensus        94 ~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~i~~wd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (228)
                      ++. +.....+..+  ...+.+++|+|++++++.++ .++.+++|++. .+.....+..  +...+..+.|+|+++++++
T Consensus       158 ~~~~~~~~~~~~~~--~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~--~~~~~~~~~~s~dg~~l~~  233 (297)
T 2ojh_A          158 MDIDSGVETRLTHG--EGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITD--SAYGDWFPHPSPSGDKVVF  233 (297)
T ss_dssp             EETTTCCEEECCCS--SSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCC--CSEEEEEEEECTTSSEEEE
T ss_pred             EECCCCcceEcccC--CCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEec--CCcccCCeEECCCCCEEEE
Confidence            643 2233333333  56789999999999887666 58899999987 4455555544  4556778999999999888


Q ss_pred             eeCC----------CCeEEEEEcCCcceeEEe-ecCCCCCcEEEEeCCCCcEEEEecCCC
Q 040370          171 IDEP----------SNEIVIWDALTAEKVAKW-SSNHIGAPRWIEHSPAEAAFITCGTDR  219 (228)
Q Consensus       171 ~~~~----------d~~i~i~d~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~s~~~dg  219 (228)
                      ++..          ++.|++||+.+++..... ..+|...+..++|+|++++|++++.|.
T Consensus       234 ~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~  293 (297)
T 2ojh_A          234 VSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP  293 (297)
T ss_dssp             EEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred             EEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence            7652          257999999887654332 136788899999999999998887654

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.91  E-value=4.4e-23  Score=166.11  Aligned_cols=207  Identities=9%  Similarity=0.051  Sum_probs=143.6

Q ss_pred             cCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceee-----ec---------cceeeEEeCCCCCeEEEE
Q 040370           18 DTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEIS-----VN---------GAINQVRYSSTGGMYVTA   83 (228)
Q Consensus        18 ~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~-----~~---------~~i~~~~~~~~~~~l~~~   83 (228)
                      |...+..++|+|||++||.++. +.|++|++.+++...........     +.         +.+.+++|+|+|+.|+++
T Consensus       112 ~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~  190 (723)
T 1xfd_A          112 SNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYA  190 (723)
T ss_dssp             CSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEE
T ss_pred             ccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEE
Confidence            4445889999999999999886 79999999987755433221100     00         123789999999999988


Q ss_pred             ecCC----------------------------------eEEEEeCCCCceeeEEeccc----ccceeEEEEECCCCCEEE
Q 040370           84 SKDG----------------------------------AIRLWDGVSANCVRSIVGAH----GTAEATSANFTKDQRFVL  125 (228)
Q Consensus        84 ~~dg----------------------------------~v~iwd~~~~~~~~~~~~~~----~~~~i~~~~~~~~~~~l~  125 (228)
                      +.|+                                  .|++||+.+++....+..+.    +...+..++|+|||++++
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~  270 (723)
T 1xfd_A          191 AINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAV  270 (723)
T ss_dssp             EEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEE
T ss_pred             EECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEE
Confidence            7653                                  79999999887655554321    145789999999999887


Q ss_pred             EeeC----CCeEEEEEccCCeeEEEEecceeeeee----eEEEECCCCcEEEEe-eCCCC------eEEEEEc-CCcce-
Q 040370          126 SCGK----DSTVKLWEVSSGRLVKQYLGATHTQLR----FQAVFNDTEEFVLSI-DEPSN------EIVIWDA-LTAEK-  188 (228)
Q Consensus       126 ~~~~----d~~i~~wd~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~-~~~d~------~i~i~d~-~~~~~-  188 (228)
                      +...    +..|++||+.+++....+... +...+    ..+.|+|+++.++.. +..++      .|.+||. ..++. 
T Consensus       271 ~~~~~~~~~~~i~~~d~~~g~~~~~~~~~-~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~  349 (723)
T 1xfd_A          271 TWLNRAQNVSILTLCDATTGVCTKKHEDE-SEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSND  349 (723)
T ss_dssp             EEEETTSCEEEEEEEETTTCCEEEEEEEE-CSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSC
T ss_pred             EEEcCCCCeEEEEEEeCCCCcceEEEEec-cCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCcc
Confidence            7653    357999999988766555331 11222    367899999987765 55566      5777773 34431 


Q ss_pred             -eEEeecCCCCCcEE-EEeCCCCcEEEEecCC---CCEEEeeec
Q 040370          189 -VAKWSSNHIGAPRW-IEHSPAEAAFITCGTD---RSVRFWKEI  227 (228)
Q Consensus       189 -~~~~~~~~~~~v~~-~~~~~~~~~l~s~~~d---g~i~vwd~~  227 (228)
                       ...+ ..+...+.. ++|+|+++.|+..+.+   +.+++|++.
T Consensus       350 ~~~~l-~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~  392 (723)
T 1xfd_A          350 NIQSI-TSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSAN  392 (723)
T ss_dssp             CCCBS-CCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEEC
T ss_pred             ceeEe-ecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEe
Confidence             4444 223334444 6999999998766554   789999874

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.90  E-value=1.5e-20  Score=139.72  Aligned_cols=205  Identities=11%  Similarity=0.102  Sum_probs=140.1

Q ss_pred             ecCcceEEEEEeCCCCEEEEec-CCCeEEEEEcccceEEeeeccceee----------eccceeeEEeCCCCCeEEEEe-
Q 040370           17 QDTHNVRSVSFHPSGDFLLAGT-DHPIAHLYDVNTFQCYLSANVPEIS----------VNGAINQVRYSSTGGMYVTAS-   84 (228)
Q Consensus        17 ~~~~~v~~~~~~~~~~~l~~~~-~d~~i~vw~~~~~~~~~~~~~~~~~----------~~~~i~~~~~~~~~~~l~~~~-   84 (228)
                      .+......+++  ++++|++++ .++.|.+|++..............+          ....+.+++|+|+|+++++++ 
T Consensus        97 ~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~  174 (361)
T 3scy_A           97 TMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDL  174 (361)
T ss_dssp             CSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEET
T ss_pred             cCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeC
Confidence            35566777888  788777665 6889999999754322211110000          022357899999999666554 


Q ss_pred             cCCeEEEEeCCCCce------e------eEEecccccceeEEEEECCCCCEEEEee-CCCeEEEEEccCCeeE--EEEec
Q 040370           85 KDGAIRLWDGVSANC------V------RSIVGAHGTAEATSANFTKDQRFVLSCG-KDSTVKLWEVSSGRLV--KQYLG  149 (228)
Q Consensus        85 ~dg~v~iwd~~~~~~------~------~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~i~~wd~~~~~~~--~~~~~  149 (228)
                      .++.|.+|++.....      +      ....... ......++|+|+++++++++ .++.|.+||+.+++..  ..+..
T Consensus       175 ~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~  253 (361)
T 3scy_A          175 GTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAP-GSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAA  253 (361)
T ss_dssp             TTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCT-TCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEES
T ss_pred             CCCEEEEEEEcCCCCcccccceeecccccceecCC-CCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEec
Confidence            588999998875432      1      1222222 44578899999999887777 6899999999877542  22221


Q ss_pred             -ceeeeeeeEEEECCCCcEEEEeeCC-CCeEEEEEcC--Ccc--eeEEeecCCCCCcEEEEeCCCCcEEEEec-CCCCEE
Q 040370          150 -ATHTQLRFQAVFNDTEEFVLSIDEP-SNEIVIWDAL--TAE--KVAKWSSNHIGAPRWIEHSPAEAAFITCG-TDRSVR  222 (228)
Q Consensus       150 -~~~~~~~~~~~~~~~~~~~~~~~~~-d~~i~i~d~~--~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~s~~-~dg~i~  222 (228)
                       ..+......+.|+|++++++++... ++.|.+|++.  +++  .+..+ .. ...+..++|+|++++|++++ .++.|.
T Consensus       254 ~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~-~~-g~~~~~~~~spdg~~l~~~~~~~~~v~  331 (361)
T 3scy_A          254 DTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQ-LT-GIHPRNFIITPNGKYLLVACRDTNVIQ  331 (361)
T ss_dssp             CSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEE-EC-SSCCCEEEECTTSCEEEEEETTTTEEE
T ss_pred             CCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEe-cC-CCCCceEEECCCCCEEEEEECCCCCEE
Confidence             1122334688999999999888776 6899999985  344  33333 22 45788999999999888877 678999


Q ss_pred             Eeee
Q 040370          223 FWKE  226 (228)
Q Consensus       223 vwd~  226 (228)
                      +|++
T Consensus       332 v~~~  335 (361)
T 3scy_A          332 IFER  335 (361)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9765

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.90  E-value=8.1e-21  Score=141.15  Aligned_cols=204  Identities=11%  Similarity=0.128  Sum_probs=139.7

Q ss_pred             cCcceEEEEEeCCCCEEEEecCC----CeEEEEEccc--ceEEeeeccceeeeccceeeEEeCCCCCeEEEEe-cCCeEE
Q 040370           18 DTHNVRSVSFHPSGDFLLAGTDH----PIAHLYDVNT--FQCYLSANVPEISVNGAINQVRYSSTGGMYVTAS-KDGAIR   90 (228)
Q Consensus        18 ~~~~v~~~~~~~~~~~l~~~~~d----~~i~vw~~~~--~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~v~   90 (228)
                      +...+..++|+|++++|++++.+    +.|.+|++..  ++........ .+ ......+++  +++++++++ .++.|.
T Consensus        48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~-~~-~~~p~~~~~--dg~~l~~~~~~~~~v~  123 (361)
T 3scy_A           48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQK-TM-GADPCYLTT--NGKNIVTANYSGGSIT  123 (361)
T ss_dssp             ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEE-CS-SSCEEEEEE--CSSEEEEEETTTTEEE
T ss_pred             cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEec-cC-CCCcEEEEE--CCCEEEEEECCCCEEE
Confidence            67788889999999999988875    7999999876  4432221111 11 345667777  777777665 688999


Q ss_pred             EEeCCCCceeeEE---eccc---------ccceeEEEEECCCCCEEEEee-CCCeEEEEEccCCee------E------E
Q 040370           91 LWDGVSANCVRSI---VGAH---------GTAEATSANFTKDQRFVLSCG-KDSTVKLWEVSSGRL------V------K  145 (228)
Q Consensus        91 iwd~~~~~~~~~~---~~~~---------~~~~i~~~~~~~~~~~l~~~~-~d~~i~~wd~~~~~~------~------~  145 (228)
                      +|++.....+..+   ..+.         ....+.+++|+|+++++++++ .++.|++|++.....      +      .
T Consensus       124 ~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~  203 (361)
T 3scy_A          124 VFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPE  203 (361)
T ss_dssp             EEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEE
T ss_pred             EEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeeccccc
Confidence            9999754322111   1111         122357899999999766555 578999999875431      1      1


Q ss_pred             EEecceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCccee--EEee--cCCCCCcEEEEeCCCCcEEEEecC--CC
Q 040370          146 QYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKV--AKWS--SNHIGAPRWIEHSPAEAAFITCGT--DR  219 (228)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~--~~~~--~~~~~~v~~~~~~~~~~~l~s~~~--dg  219 (228)
                      .... ........+.|+|+++++++++..++.|.+||+.+++..  ....  ..+...+..++|+|+|++|+++..  ++
T Consensus       204 ~~~~-~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~  282 (361)
T 3scy_A          204 AFKV-APGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKAD  282 (361)
T ss_dssp             EEEC-CTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSC
T ss_pred             ceec-CCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCC
Confidence            1111 123345678999999999888877899999999876542  2221  233455789999999998876665  48


Q ss_pred             CEEEeee
Q 040370          220 SVRFWKE  226 (228)
Q Consensus       220 ~i~vwd~  226 (228)
                      .|.+|++
T Consensus       283 ~i~v~~~  289 (361)
T 3scy_A          283 GVAIFKV  289 (361)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEE
Confidence            8999997

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.90  E-value=5.6e-21  Score=142.31  Aligned_cols=204  Identities=9%  Similarity=0.050  Sum_probs=142.9

Q ss_pred             CcceEEEEEeCCCCEEEEecCCCeEEEEEcc-cceEEeeeccceeeeccceeeEEeCCCCCe--EEEEe-----------
Q 040370           19 THNVRSVSFHPSGDFLLAGTDHPIAHLYDVN-TFQCYLSANVPEISVNGAINQVRYSSTGGM--YVTAS-----------   84 (228)
Q Consensus        19 ~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--l~~~~-----------   84 (228)
                      ...+..++|+|++++|++++.+ .|.+|++. +++........ .  .+.+.+++|+|+|++  +++++           
T Consensus        39 ~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~-~--~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~  114 (365)
T 1jof_A           39 DEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHP-I--GGHPRANDADTNTRAIFLLAAKQPPYAVYANPF  114 (365)
T ss_dssp             TCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEE-C--CSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEE
T ss_pred             CCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEee-c--CCCCccEEECCCCCEEEEEEecCCcceecccee
Confidence            3478899999999999988887 99999997 77654322211 0  133567899999994  45553           


Q ss_pred             --cCCeEEEEeCC-CCceeeEEec--ccccceeEEEEECCCCCEEEEeeC-CCeEEEEEcc-CCeeEE--EEecceeeee
Q 040370           85 --KDGAIRLWDGV-SANCVRSIVG--AHGTAEATSANFTKDQRFVLSCGK-DSTVKLWEVS-SGRLVK--QYLGATHTQL  155 (228)
Q Consensus        85 --~dg~v~iwd~~-~~~~~~~~~~--~~~~~~i~~~~~~~~~~~l~~~~~-d~~i~~wd~~-~~~~~~--~~~~~~~~~~  155 (228)
                        .+|.+.+|++. .++....+..  +.....+.+++|+|+|++++++.. ++.|++||+. +++...  .+....+...
T Consensus       115 ~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~  194 (365)
T 1jof_A          115 YKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDH  194 (365)
T ss_dssp             SSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCC
T ss_pred             ecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCC
Confidence              68999999997 4555443332  112457889999999998887664 6799999998 665432  2221112345


Q ss_pred             eeEEEECCCCcEEEEeeCCCCeEEEEEcC--CcceeE---Eee--c----CCCC------CcEEEE-eCCCCcEEEEecC
Q 040370          156 RFQAVFNDTEEFVLSIDEPSNEIVIWDAL--TAEKVA---KWS--S----NHIG------APRWIE-HSPAEAAFITCGT  217 (228)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~d~~i~i~d~~--~~~~~~---~~~--~----~~~~------~v~~~~-~~~~~~~l~s~~~  217 (228)
                      ...+.|+|+++++++++..++.|.+|++.  +++...   .+.  .    +|..      .+..++ |+|+|++|++++.
T Consensus       195 p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~  274 (365)
T 1jof_A          195 PRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSR  274 (365)
T ss_dssp             EEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEE
T ss_pred             CCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECC
Confidence            67889999999998888767999999865  454321   121  1    1122      478999 9999998887664


Q ss_pred             CC------CEEEeee
Q 040370          218 DR------SVRFWKE  226 (228)
Q Consensus       218 dg------~i~vwd~  226 (228)
                      +.      .|.+|++
T Consensus       275 ~~~~~~~~~i~v~~~  289 (365)
T 1jof_A          275 ANKFELQGYIAGFKL  289 (365)
T ss_dssp             ESSTTSCCEEEEEEE
T ss_pred             CCCCCCCCeEEEEEE
Confidence            32      7999987

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.90  E-value=2.3e-21  Score=144.36  Aligned_cols=206  Identities=9%  Similarity=0.058  Sum_probs=140.8

Q ss_pred             ceEEEEEeCCCCE--EEEec-------------CCCeEEEEEcc-cceEEeeeccceeeeccceeeEEeCCCCCeEEEEe
Q 040370           21 NVRSVSFHPSGDF--LLAGT-------------DHPIAHLYDVN-TFQCYLSANVPEISVNGAINQVRYSSTGGMYVTAS   84 (228)
Q Consensus        21 ~v~~~~~~~~~~~--l~~~~-------------~d~~i~vw~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~   84 (228)
                      .+.+++|+|++++  ++++.             .++.+.+|++. +++...........+...+.+++|+|+|+++++++
T Consensus        84 ~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~  163 (365)
T 1jof_A           84 HPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSAD  163 (365)
T ss_dssp             SGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEE
T ss_pred             CCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEc
Confidence            3566899999994  45553             68999999997 45543322211001145789999999999888765


Q ss_pred             c-CCeEEEEeCC-CCceee--EEecccccceeEEEEECCCCCEEEEeeC-CCeEEEEEcc--CCeeEE---EEecce---
Q 040370           85 K-DGAIRLWDGV-SANCVR--SIVGAHGTAEATSANFTKDQRFVLSCGK-DSTVKLWEVS--SGRLVK---QYLGAT---  151 (228)
Q Consensus        85 ~-dg~v~iwd~~-~~~~~~--~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~~i~~wd~~--~~~~~~---~~~~~~---  151 (228)
                      . ++.|++||+. +++...  .+....+...+..++|+|+++++++++. ++.|.+|++.  +++...   .+....   
T Consensus       164 ~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~  243 (365)
T 1jof_A          164 LTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGI  243 (365)
T ss_dssp             TTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTC
T ss_pred             CCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCc
Confidence            4 6899999998 666432  2321111446889999999999887765 6899999875  454421   222110   


Q ss_pred             --eee------eeeEEE-ECCCCcEEEEeeCCCC-----eEEEEEcC-CcceeEE--eecCCCCCcEEEEeCC---CCcE
Q 040370          152 --HTQ------LRFQAV-FNDTEEFVLSIDEPSN-----EIVIWDAL-TAEKVAK--WSSNHIGAPRWIEHSP---AEAA  211 (228)
Q Consensus       152 --~~~------~~~~~~-~~~~~~~~~~~~~~d~-----~i~i~d~~-~~~~~~~--~~~~~~~~v~~~~~~~---~~~~  211 (228)
                        +..      ....+. ++|++++++++...++     .|.+|++. +++....  ....+...+..++|+|   ++++
T Consensus       244 ~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~  323 (365)
T 1jof_A          244 PDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEW  323 (365)
T ss_dssp             CCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTE
T ss_pred             CCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCE
Confidence              111      467888 9999999887664333     89999986 5554331  1223455677899999   8999


Q ss_pred             EEEecCC-CCEEEeee
Q 040370          212 FITCGTD-RSVRFWKE  226 (228)
Q Consensus       212 l~s~~~d-g~i~vwd~  226 (228)
                      |++++.+ +.|.+|++
T Consensus       324 l~v~~~~~~~v~v~~~  339 (365)
T 1jof_A          324 MAITDDQEGWLEIYRW  339 (365)
T ss_dssp             EEEECSSSCEEEEEEE
T ss_pred             EEEEEcCCCeEEEEEE
Confidence            9998864 89999986

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.90  E-value=1.1e-21  Score=144.85  Aligned_cols=162  Identities=11%  Similarity=0.049  Sum_probs=120.9

Q ss_pred             EEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEE-EEecCCeEEEEeCCCCceeeE
Q 040370           24 SVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYV-TASKDGAIRLWDGVSANCVRS  102 (228)
Q Consensus        24 ~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~dg~v~iwd~~~~~~~~~  102 (228)
                      .+++++++.++++++.++.|.+||+.+++.........   ...+..++|+|+++.++ ++..++.|.+||+.+++....
T Consensus         4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~---~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~   80 (349)
T 1jmx_B            4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPD---KFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFH   80 (349)
T ss_dssp             CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSS---CCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCC---CCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEE
Confidence            45678888999999999999999999988766554321   12578899999998654 556789999999999988777


Q ss_pred             Eecccc----cceeEEEEECCCCCEEEEeeCC------------CeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCc
Q 040370          103 IVGAHG----TAEATSANFTKDQRFVLSCGKD------------STVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEE  166 (228)
Q Consensus       103 ~~~~~~----~~~i~~~~~~~~~~~l~~~~~d------------~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (228)
                      +...+.    ...+..++|+|+++++++++.+            +.|.+||+.+++.............+..+.++|+++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~  160 (349)
T 1jmx_B           81 ANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGS  160 (349)
T ss_dssp             EESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSC
T ss_pred             EEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCcccceeECCCCc
Confidence            764321    2336789999999999998865            899999998854332221111233567788999999


Q ss_pred             EEEEeeCCCCeEEEEEcCCcceeEEe
Q 040370          167 FVLSIDEPSNEIVIWDALTAEKVAKW  192 (228)
Q Consensus       167 ~~~~~~~~d~~i~i~d~~~~~~~~~~  192 (228)
                       +++++   +.|.+||..+++....+
T Consensus       161 -l~~~~---~~i~~~d~~~~~~~~~~  182 (349)
T 1jmx_B          161 -LYVAG---PDIYKMDVKTGKYTVAL  182 (349)
T ss_dssp             -EEEES---SSEEEECTTTCCEEEEE
T ss_pred             -EEEcc---CcEEEEeCCCCceeccc
Confidence             55543   44999999988876655

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.89  E-value=8.3e-22  Score=164.45  Aligned_cols=195  Identities=8%  Similarity=0.024  Sum_probs=158.2

Q ss_pred             cCcceEEEEEe-CCCCEEEEecCCCeEEEEEcccceEEeeeccceeeecc-ceeeEEeCCCCCeEEEEecCCeEE-EEeC
Q 040370           18 DTHNVRSVSFH-PSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNG-AINQVRYSSTGGMYVTASKDGAIR-LWDG   94 (228)
Q Consensus        18 ~~~~v~~~~~~-~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~dg~v~-iwd~   94 (228)
                      |...+.+++|+ |+|++|++++ ++.|.+|++..++.... .   .+ .. .+..++|+ +|+.+++++.++.+. +||+
T Consensus       294 ~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~~-~---~~-~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~  366 (1045)
T 1k32_A          294 SIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLKV-P---EP-LRIRYVRRGGD-TKVAFIHGTREGDFLGIYDY  366 (1045)
T ss_dssp             ECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEEC-S---CC-SCEEEEEECSS-SEEEEEEEETTEEEEEEEET
T ss_pred             cccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceEEc-c---CC-CcceEEeeeEc-CCCeEEEEECCCceEEEEEC
Confidence            45579999999 9999999888 78999999988765432 1   12 44 78999999 999999999888898 9998


Q ss_pred             CCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCC
Q 040370           95 VSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEP  174 (228)
Q Consensus        95 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (228)
                      .+++.. .+..+  ...+..++|+|++++|++++.++.|++||+.+++.......  +...+..+.|+|++++++.++..
T Consensus       367 ~~~~~~-~l~~~--~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~--~~~~v~~~~~SpDG~~la~~~~~  441 (1045)
T 1k32_A          367 RTGKAE-KFEEN--LGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERS--REAMITDFTISDNSRFIAYGFPL  441 (1045)
T ss_dssp             TTCCEE-ECCCC--CCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEEC--SSSCCCCEEECTTSCEEEEEEEE
T ss_pred             CCCCce-EecCC--ccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccC--CCCCccceEECCCCCeEEEEecC
Confidence            876543 33332  57889999999999999999999999999999887766644  55567889999999999887653


Q ss_pred             ---------CCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeee
Q 040370          175 ---------SNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKE  226 (228)
Q Consensus       175 ---------d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~  226 (228)
                               ++.|++||+.+++ ...+ ..|...+..++|+|+|++|+.++.++...+|+.
T Consensus       442 ~~~~~~~~~~~~i~l~d~~~g~-~~~l-~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~  500 (1045)
T 1k32_A          442 KHGETDGYVMQAIHVYDMEGRK-IFAA-TTENSHDYAPAFDADSKNLYYLSYRSLDPSPDR  500 (1045)
T ss_dssp             CSSTTCSCCEEEEEEEETTTTE-EEEC-SCSSSBEEEEEECTTSCEEEEEESCCCCCEECS
T ss_pred             ccccccCCCCCeEEEEECCCCc-EEEe-eCCCcccCCceEcCCCCEEEEEecccCCcCcch
Confidence                     2599999998877 4444 577888899999999999999998888777763

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.89  E-value=5e-21  Score=159.82  Aligned_cols=201  Identities=10%  Similarity=0.002  Sum_probs=150.9

Q ss_pred             EEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCC------
Q 040370           14 RVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDG------   87 (228)
Q Consensus        14 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg------   87 (228)
                      .+.+|...+..++|+|+|++|++++.++.|++||+.+++.......   + ...+.+++|+|+|++|++++.++      
T Consensus       373 ~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~---~-~~~v~~~~~SpDG~~la~~~~~~~~~~~~  448 (1045)
T 1k32_A          373 KFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERS---R-EAMITDFTISDNSRFIAYGFPLKHGETDG  448 (1045)
T ss_dssp             ECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEEC---S-SSCCCCEEECTTSCEEEEEEEECSSTTCS
T ss_pred             EecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccC---C-CCCccceEECCCCCeEEEEecCccccccC
Confidence            3346778999999999999999999999999999999876554422   2 67789999999999998887654      


Q ss_pred             ----eEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCee-------EEE----------
Q 040370           88 ----AIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRL-------VKQ----------  146 (228)
Q Consensus        88 ----~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~-------~~~----------  146 (228)
                          .|++||+.+++ ...+..+  ...+..++|+|+|++|+.++.++...+|+......       +..          
T Consensus       449 ~~~~~i~l~d~~~g~-~~~l~~~--~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  525 (1045)
T 1k32_A          449 YVMQAIHVYDMEGRK-IFAATTE--NSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNP  525 (1045)
T ss_dssp             CCEEEEEEEETTTTE-EEECSCS--SSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCG
T ss_pred             CCCCeEEEEECCCCc-EEEeeCC--CcccCCceEcCCCCEEEEEecccCCcCcchhccccccccCceeEEEEeCCCCCCc
Confidence                89999998877 4445443  55678899999999999999888777776543221       000          


Q ss_pred             ------------------------EecceeeeeeeEEEECCCCcEEEE------------eeCCCCeEEEEEcCCcceeE
Q 040370          147 ------------------------YLGATHTQLRFQAVFNDTEEFVLS------------IDEPSNEIVIWDALTAEKVA  190 (228)
Q Consensus       147 ------------------------~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~d~~i~i~d~~~~~~~~  190 (228)
                                              .....+...+..+.++|++..+++            .......+.+||+.+++...
T Consensus       526 ~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~dg~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~~~~~  605 (1045)
T 1k32_A          526 TKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTE  605 (1045)
T ss_dssp             GGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEE
T ss_pred             cccCcCccccccccccccCHhHceEEcCCCCCChhheEEcCCCeEEEEecccCcccccccccCCCceEEEEECCCCcEEE
Confidence                                    000112344667889999987775            12234688999998877533


Q ss_pred             EeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370          191 KWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEI  227 (228)
Q Consensus       191 ~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~  227 (228)
                      ..     ..+..++|+|||++|++++.| .|++||+.
T Consensus       606 l~-----~~v~~~~~S~DG~~l~~~~~~-~i~~~d~~  636 (1045)
T 1k32_A          606 VK-----NNLTDLRLSADRKTVMVRKDD-GKIYTFPL  636 (1045)
T ss_dssp             EE-----EEEEEEEECTTSCEEEEEETT-SCEEEEES
T ss_pred             ee-----cCcceEEECCCCCEEEEEcCC-cEEEEeCc
Confidence            22     568899999999999998866 79999973

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.89  E-value=3.9e-22  Score=160.59  Aligned_cols=197  Identities=11%  Similarity=0.076  Sum_probs=139.2

Q ss_pred             ceEEEEEeCCCCEEEEecC---------CCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEE
Q 040370           21 NVRSVSFHPSGDFLLAGTD---------HPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRL   91 (228)
Q Consensus        21 ~v~~~~~~~~~~~l~~~~~---------d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i   91 (228)
                      .+.+++|||||++|+.++.         ++.|++||+.+++.......     ...+..++|||+|+.|+.+. ++.|++
T Consensus        61 ~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l-----~~~~~~~~~SPDG~~la~~~-~~~i~~  134 (719)
T 1z68_A           61 NASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNEL-----PRPIQYLCWSPVGSKLAYVY-QNNIYL  134 (719)
T ss_dssp             TCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCC-----CSSBCCEEECSSTTCEEEEE-TTEEEE
T ss_pred             ceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccceec-----CcccccceECCCCCEEEEEE-CCeEEE
Confidence            3899999999999998876         78999999999876321221     34688999999999999885 789999


Q ss_pred             EeCCCCceeeEEeccccccee-----------------EEEEECCCCCEEEEeeCCC-----------------------
Q 040370           92 WDGVSANCVRSIVGAHGTAEA-----------------TSANFTKDQRFVLSCGKDS-----------------------  131 (228)
Q Consensus        92 wd~~~~~~~~~~~~~~~~~~i-----------------~~~~~~~~~~~l~~~~~d~-----------------------  131 (228)
                      ||+.+++..+.....+ ...+                 .+++|+|||++|++++.|.                       
T Consensus       135 ~~~~~g~~~~l~~~~~-~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~  213 (719)
T 1z68_A          135 KQRPGDPPFQITFNGR-ENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIP  213 (719)
T ss_dssp             ESSTTSCCEECCCCCB-TTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEE
T ss_pred             EeCCCCCcEEEecCCC-cCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeec
Confidence            9998887654322211 1112                 4799999999999987652                       


Q ss_pred             -----------eEEEEEccCCeeE--EEEec----ceeeeeeeEEEECCCCcEEEEeeCC-C--CeEEEEE----cCCcc
Q 040370          132 -----------TVKLWEVSSGRLV--KQYLG----ATHTQLRFQAVFNDTEEFVLSIDEP-S--NEIVIWD----ALTAE  187 (228)
Q Consensus       132 -----------~i~~wd~~~~~~~--~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~-d--~~i~i~d----~~~~~  187 (228)
                                 .|++||+.+++..  ..+..    ..+...+..+.|+|+++.+++.... +  ..|.+||    ..+++
T Consensus       214 yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~  293 (719)
T 1z68_A          214 YPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWD  293 (719)
T ss_dssp             CCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEE
T ss_pred             CCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCc
Confidence                       7889999887642  11110    1255667889999998766653321 1  3588899    77776


Q ss_pred             eeEEee---cCCCCCcE-----EEEeCCCCcEEE--EecCCCCEEEe
Q 040370          188 KVAKWS---SNHIGAPR-----WIEHSPAEAAFI--TCGTDRSVRFW  224 (228)
Q Consensus       188 ~~~~~~---~~~~~~v~-----~~~~~~~~~~l~--s~~~dg~i~vw  224 (228)
                      ......   ..|...+.     .+.|+|+|+.|+  ++..+|...||
T Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~  340 (719)
T 1z68_A          294 CPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIH  340 (719)
T ss_dssp             CCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEE
T ss_pred             eEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEE
Confidence            554432   35666666     789999998554  45566655444

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.88  E-value=1.9e-20  Score=137.43  Aligned_cols=152  Identities=12%  Similarity=0.116  Sum_probs=117.6

Q ss_pred             CEEEEecCCCeEEEEEcccceEEeeeccceeeecc-ceeeEEeCCCCCeE-EEEecCCeEEEEeCCCCceeeEEeccc--
Q 040370           32 DFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNG-AINQVRYSSTGGMY-VTASKDGAIRLWDGVSANCVRSIVGAH--  107 (228)
Q Consensus        32 ~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l-~~~~~dg~v~iwd~~~~~~~~~~~~~~--  107 (228)
                      +++++++.++.|.+||+.+++.........   .. .+..++|+|+++.+ +++..++.|.+||+.+++....+....  
T Consensus         2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~---~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~   78 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEKMAVDKVITIAD---AGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPE   78 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTT---CTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTT
T ss_pred             cEEEEcCCCCeEEEEECCCCcEEEEEEcCC---CCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcc
Confidence            478899999999999999988766554321   11 47899999999765 556668899999999998887776432  


Q ss_pred             -ccceeEEEEECCCCCEEEEee------------CCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCC
Q 040370          108 -GTAEATSANFTKDQRFVLSCG------------KDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEP  174 (228)
Q Consensus       108 -~~~~i~~~~~~~~~~~l~~~~------------~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (228)
                       +...+..++|+|++++++++.            .++.|.+||+.+++....+..   ...+..+.++|++++++++   
T Consensus        79 ~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~---~~~~~~~~~s~dg~~l~~~---  152 (337)
T 1pby_B           79 ERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA---PRQITMLAWARDGSKLYGL---  152 (337)
T ss_dssp             EEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC---CSSCCCEEECTTSSCEEEE---
T ss_pred             cccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC---CCCcceeEECCCCCEEEEe---
Confidence             122567899999999988886            579999999999887776653   2345678899999988886   


Q ss_pred             CCeEEEEEcCCcceeEEe
Q 040370          175 SNEIVIWDALTAEKVAKW  192 (228)
Q Consensus       175 d~~i~i~d~~~~~~~~~~  192 (228)
                      ++.|.+||+.+++....+
T Consensus       153 ~~~i~~~d~~~~~~~~~~  170 (337)
T 1pby_B          153 GRDLHVMDPEAGTLVEDK  170 (337)
T ss_dssp             SSSEEEEETTTTEEEEEE
T ss_pred             CCeEEEEECCCCcEeeee
Confidence            478999999887765444

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.88  E-value=7e-21  Score=149.94  Aligned_cols=191  Identities=10%  Similarity=-0.004  Sum_probs=137.6

Q ss_pred             CcceEEEEEeCCCCEEEEecC-CCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEec---CCeEEEEeC
Q 040370           19 THNVRSVSFHPSGDFLLAGTD-HPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASK---DGAIRLWDG   94 (228)
Q Consensus        19 ~~~v~~~~~~~~~~~l~~~~~-d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---dg~v~iwd~   94 (228)
                      ..+|.+++|+|||++||.++. ||+++||+++.++......    ++...+..+.|+|+ +.+++++.   +....+|.+
T Consensus        21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt~----~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~   95 (582)
T 3o4h_A           21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKLNR----EPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKV   95 (582)
T ss_dssp             HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEECCS----SCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEE
T ss_pred             ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEeeec----ccccccccccCCCC-eEEEEeccCCCCcceEEEEE
Confidence            568999999999999998876 9999999997776543322    21357899999999 77777765   455666654


Q ss_pred             CC--CceeeEEecccccceeEEEEECCCCC--EEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEE
Q 040370           95 VS--ANCVRSIVGAHGTAEATSANFTKDQR--FVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLS  170 (228)
Q Consensus        95 ~~--~~~~~~~~~~~~~~~i~~~~~~~~~~--~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (228)
                      ..  ......+...   ......+|+|+++  .+++++.+ .+.+||+.+++.......   ..  ..+.|+|+|++++.
T Consensus        96 ~~~~~g~~~~l~~~---~~~~~~~~s~dg~~~~~~s~~~~-~~~l~d~~~g~~~~l~~~---~~--~~~~~spDG~~la~  166 (582)
T 3o4h_A           96 NTSRPGEEQRLEAV---KPMRILSGVDTGEAVVFTGATED-RVALYALDGGGLRELARL---PG--FGFVSDIRGDLIAG  166 (582)
T ss_dssp             ETTSTTCCEECTTS---CSBEEEEEEECSSCEEEEEECSS-CEEEEEEETTEEEEEEEE---SS--CEEEEEEETTEEEE
T ss_pred             eccCCCccccccCC---CCceeeeeCCCCCeEEEEecCCC-CceEEEccCCcEEEeecC---CC--ceEEECCCCCEEEE
Confidence            43  2222233322   1233557777775  44444444 455999998876554432   22  78889999999997


Q ss_pred             eeCCC----CeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCC--CEEEeee
Q 040370          171 IDEPS----NEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDR--SVRFWKE  226 (228)
Q Consensus       171 ~~~~d----~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg--~i~vwd~  226 (228)
                      ++. +    +.|++||+.+++.. .+ ..|.+.+..++|+|||+.|+++..++  .|++||+
T Consensus       167 ~~~-~~~~~~~i~~~d~~~g~~~-~l-~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~  225 (582)
T 3o4h_A          167 LGF-FGGGRVSLFTSNLSSGGLR-VF-DSGEGSFSSASISPGMKVTAGLETAREARLVTVDP  225 (582)
T ss_dssp             EEE-EETTEEEEEEEETTTCCCE-EE-CCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECT
T ss_pred             EEE-cCCCCeEEEEEcCCCCCce-Ee-ecCCCccccceECCCCCEEEEccCCCeeEEEEEcC
Confidence            654 3    67999999888765 34 57888899999999999999888888  7888885

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.87  E-value=7.1e-22  Score=159.09  Aligned_cols=195  Identities=10%  Similarity=0.065  Sum_probs=139.4

Q ss_pred             EEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEec---------CCeEEEEeC
Q 040370           24 SVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASK---------DGAIRLWDG   94 (228)
Q Consensus        24 ~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---------dg~v~iwd~   94 (228)
                      +++|+|++++++++ .|+.|++||+.+++........... ...+.+++|||||++|++++.         ++.|++||+
T Consensus        20 ~~~~s~dg~~~~~~-~d~~i~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~   97 (719)
T 1z68_A           20 FPNWISGQEYLHQS-ADNNIVLYNIETGQSYTILSNRTMK-SVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDL   97 (719)
T ss_dssp             CCEESSSSEEEEEC-TTSCEEEEESSSCCEEEEECHHHHH-TTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEET
T ss_pred             ccEECCCCeEEEEc-CCCCEEEEEcCCCcEEEEEcccccc-ccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEEC
Confidence            78999999655554 6899999999998865544321100 114899999999999998876         789999999


Q ss_pred             CCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeee-----------------eee
Q 040370           95 VSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQ-----------------LRF  157 (228)
Q Consensus        95 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~-----------------~~~  157 (228)
                      .+++.......   ...+..++|+|||+.|+.+. ++.|++||+.+++........ +..                 ...
T Consensus        98 ~~g~~~~~~~l---~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~-~~~~v~~g~~~~v~~ee~~~~~~  172 (719)
T 1z68_A           98 SNGEFVRGNEL---PRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNG-RENKIFNGIPDWVYEEEMLATKY  172 (719)
T ss_dssp             TTTEECCSSCC---CSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCC-BTTTEEESSCCHHHHHHTTCSSC
T ss_pred             CCCccccceec---CcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCC-CcCCeEcccccceeeeecccCcc
Confidence            98876211111   23578899999999999885 789999999887765432111 111                 114


Q ss_pred             EEEECCCCcEEEEeeCCCC---------------------------------eEEEEEcCCccee--EEe-----ecCCC
Q 040370          158 QAVFNDTEEFVLSIDEPSN---------------------------------EIVIWDALTAEKV--AKW-----SSNHI  197 (228)
Q Consensus       158 ~~~~~~~~~~~~~~~~~d~---------------------------------~i~i~d~~~~~~~--~~~-----~~~~~  197 (228)
                      .+.|+|+|++++.+..+++                                 .|++||+.+++..  ..+     ..+|.
T Consensus       173 ~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~  252 (719)
T 1z68_A          173 ALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSD  252 (719)
T ss_dssp             CEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSC
T ss_pred             cEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCc
Confidence            7999999999988764221                                 7889999887752  111     13577


Q ss_pred             CCcEEEEeCCCCcEEEEecC--C--CCEEEee
Q 040370          198 GAPRWIEHSPAEAAFITCGT--D--RSVRFWK  225 (228)
Q Consensus       198 ~~v~~~~~~~~~~~l~s~~~--d--g~i~vwd  225 (228)
                      ..+..++|+||++++++...  +  ..|.+||
T Consensus       253 ~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d  284 (719)
T 1z68_A          253 YYFSWLTWVTDERVCLQWLKRVQNVSVLSICD  284 (719)
T ss_dssp             EEEEEEEESSSSEEEEEEEESSTTEEEEEEEE
T ss_pred             ceEEEeEEeCCCeEEEEEeccccCeEEEEEEc
Confidence            88999999999887777442  2  2377777

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.87  E-value=2.7e-21  Score=152.28  Aligned_cols=197  Identities=10%  Similarity=0.017  Sum_probs=141.3

Q ss_pred             eEEEeecC-cceEEEEEeCCCCEEEEecC---CCeEEEEEccc---ceEEeeeccceeeeccceeeEEeCCCCCe-EEEE
Q 040370           12 AFRVIQDT-HNVRSVSFHPSGDFLLAGTD---HPIAHLYDVNT---FQCYLSANVPEISVNGAINQVRYSSTGGM-YVTA   83 (228)
Q Consensus        12 ~~~~~~~~-~~v~~~~~~~~~~~l~~~~~---d~~i~vw~~~~---~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-l~~~   83 (228)
                      ..++..|. ..+..++|+|+ +.+++++.   +....+|.+..   +... ....     ...+...+|+|+++. +++.
T Consensus        56 ~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~~g~~~-~l~~-----~~~~~~~~~s~dg~~~~~~s  128 (582)
T 3o4h_A           56 TVKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSRPGEEQ-RLEA-----VKPMRILSGVDTGEAVVFTG  128 (582)
T ss_dssp             EEECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTSTTCCE-ECTT-----SCSBEEEEEEECSSCEEEEE
T ss_pred             cEeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEeccCCCccc-cccC-----CCCceeeeeCCCCCeEEEEe
Confidence            34445555 58999999999 77776664   45556665543   2222 2222     122345678887753 3333


Q ss_pred             ecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCC----CeEEEEEccCCeeEEEEecceeeeeeeEE
Q 040370           84 SKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKD----STVKLWEVSSGRLVKQYLGATHTQLRFQA  159 (228)
Q Consensus        84 ~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d----~~i~~wd~~~~~~~~~~~~~~~~~~~~~~  159 (228)
                      +.++.+.+||+.+++.......+   .  .+++|+|||+++++++.+    +.|++||+.+++.. .+..  +...+..+
T Consensus       129 ~~~~~~~l~d~~~g~~~~l~~~~---~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~--~~~~~~~~  200 (582)
T 3o4h_A          129 ATEDRVALYALDGGGLRELARLP---G--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDS--GEGSFSSA  200 (582)
T ss_dssp             ECSSCEEEEEEETTEEEEEEEES---S--CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCE-EECC--SSCEEEEE
T ss_pred             cCCCCceEEEccCCcEEEeecCC---C--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCce-Eeec--CCCccccc
Confidence            44445559999888765544332   2  788999999999988877    78999999887754 4433  45567899


Q ss_pred             EECCCCcEEEEeeCCCC--eEEEEEcCCcceeEEeecCCCCCcEEEE--------eCCCCcEEEEecCCCCEEEeee
Q 040370          160 VFNDTEEFVLSIDEPSN--EIVIWDALTAEKVAKWSSNHIGAPRWIE--------HSPAEAAFITCGTDRSVRFWKE  226 (228)
Q Consensus       160 ~~~~~~~~~~~~~~~d~--~i~i~d~~~~~~~~~~~~~~~~~v~~~~--------~~~~~~~l~s~~~dg~i~vwd~  226 (228)
                      .|+|+|+.++++ ..++  .|++||+.+++.. .+ ..|...+..++        |+|||.++++++.||.+++|++
T Consensus       201 ~~SpDG~~l~~~-~~~~~~~i~~~d~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~  274 (582)
T 3o4h_A          201 SISPGMKVTAGL-ETAREARLVTVDPRDGSVE-DL-ELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID  274 (582)
T ss_dssp             EECTTSCEEEEE-ECSSCEEEEEECTTTCCEE-EC-CCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred             eECCCCCEEEEc-cCCCeeEEEEEcCCCCcEE-Ec-cCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE
Confidence            999999999954 4467  8999999988877 44 67777777777        9999999999999999999974

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.85  E-value=3.8e-19  Score=133.22  Aligned_cols=207  Identities=10%  Similarity=-0.046  Sum_probs=143.9

Q ss_pred             ceeEEEeecCcceEE-----EEEeCCCCEEEEecC-CC--eEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEE
Q 040370           10 KRAFRVIQDTHNVRS-----VSFHPSGDFLLAGTD-HP--IAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYV   81 (228)
Q Consensus        10 ~~~~~~~~~~~~v~~-----~~~~~~~~~l~~~~~-d~--~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~   81 (228)
                      .+..++..|......     .+|+|||++|+.++. ++  .|.+||+.+++........    ...+..+.|+|+++.|+
T Consensus        21 ~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~----~~~~~~~~~spdg~~l~   96 (388)
T 3pe7_A           21 AQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGR----GDNTFGGFLSPDDDALF   96 (388)
T ss_dssp             CEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSS----CBCSSSCEECTTSSEEE
T ss_pred             cceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCC----CCCccceEEcCCCCEEE
Confidence            344555556656665     889999999998876 66  4888899888765544322    34445678999999999


Q ss_pred             EEecCCeEEEEeCCCCceeeEEecccccceeEE--EEECCCCCEEEEe----------------------eCCCeEEEEE
Q 040370           82 TASKDGAIRLWDGVSANCVRSIVGAHGTAEATS--ANFTKDQRFVLSC----------------------GKDSTVKLWE  137 (228)
Q Consensus        82 ~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~--~~~~~~~~~l~~~----------------------~~d~~i~~wd  137 (228)
                      .++.++.|++||+.+++.......+  ...+..  ..++|++.+++..                      ..+..|++||
T Consensus        97 ~~~~~~~l~~~d~~~g~~~~~~~~~--~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d  174 (388)
T 3pe7_A           97 YVKDGRNLMRVDLATLEENVVYQVP--AEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVD  174 (388)
T ss_dssp             EEETTTEEEEEETTTCCEEEEEECC--TTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEE
T ss_pred             EEeCCCeEEEEECCCCcceeeeech--hhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEE
Confidence            9999999999999998876666554  233332  3458999988742                      2446899999


Q ss_pred             ccCCeeEEEEecceeeeeeeEEEECC-CCcEEEEeeCC-----CCeEEEEEcCCcceeEEeecCCC-CCcEEEEeCCCCc
Q 040370          138 VSSGRLVKQYLGATHTQLRFQAVFND-TEEFVLSIDEP-----SNEIVIWDALTAEKVAKWSSNHI-GAPRWIEHSPAEA  210 (228)
Q Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-----d~~i~i~d~~~~~~~~~~~~~~~-~~v~~~~~~~~~~  210 (228)
                      +.+++......   +...+..+.|+| +++.++.....     ...|.++|...++.. .+...+. ..+....|+|+|+
T Consensus       175 ~~~g~~~~l~~---~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~spdg~  250 (388)
T 3pe7_A          175 LKTGESTVILQ---ENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMR-KVKTHAEGESCTHEFWVPDGS  250 (388)
T ss_dssp             TTTCCEEEEEE---ESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCE-ESCCCCTTEEEEEEEECTTSS
T ss_pred             CCCCceEEeec---CCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceE-EeeeCCCCcccccceECCCCC
Confidence            99886544332   344567889999 99888766542     247888887655443 3322222 3577889999999


Q ss_pred             EEEEecC-CC----CEEEeee
Q 040370          211 AFITCGT-DR----SVRFWKE  226 (228)
Q Consensus       211 ~l~s~~~-dg----~i~vwd~  226 (228)
                      .|+..+. ++    .|.+||+
T Consensus       251 ~l~~~~~~~~~~~~~l~~~d~  271 (388)
T 3pe7_A          251 ALVYVSYLKGSPDRFIYSADP  271 (388)
T ss_dssp             CEEEEEEETTCCCEEEEEECT
T ss_pred             EEEEEecCCCCCcceEEEEec
Confidence            7765443 22    3888885

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.85  E-value=4.5e-18  Score=122.39  Aligned_cols=200  Identities=13%  Similarity=0.156  Sum_probs=143.5

Q ss_pred             CcceEEEEEe-CCCCEEEEecC-CCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCC
Q 040370           19 THNVRSVSFH-PSGDFLLAGTD-HPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVS   96 (228)
Q Consensus        19 ~~~v~~~~~~-~~~~~l~~~~~-d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~   96 (228)
                      ...+..+++. +++.++++... ++.|.+|+ .+++....+....   ...+..++++|+++++++...++.|.+||.. 
T Consensus        76 ~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d-~~g~~~~~~~~~~---~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-  150 (286)
T 1q7f_A           76 LLYPNRVAVVRNSGDIIVTERSPTHQIQIYN-QYGQFVRKFGATI---LQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-  150 (286)
T ss_dssp             BSSEEEEEEETTTTEEEEEECGGGCEEEEEC-TTSCEEEEECTTT---CSCEEEEEECTTSCEEEEETTTTEEEEECTT-
T ss_pred             ccCceEEEEEcCCCeEEEEcCCCCCEEEEEC-CCCcEEEEecCcc---CCCceEEEEeCCCCEEEEECCCCEEEEEcCC-
Confidence            3578899995 67766666543 78999999 4555544443211   3467899999999988888888999999964 


Q ss_pred             CceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCC
Q 040370           97 ANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSN  176 (228)
Q Consensus        97 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  176 (228)
                      ++....+........+..++++++++.+++...++.|++||. +++.+..+...........+++++++..+++... ++
T Consensus       151 g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~-~~  228 (286)
T 1q7f_A          151 GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNH-NN  228 (286)
T ss_dssp             SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECS-SS
T ss_pred             CCEEEEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcC-CCCEEEEEccCCccCCCcEEEECCCCCEEEEeCC-CC
Confidence            555555543222346789999999998888888999999997 4555655543222245678899999976666544 45


Q ss_pred             -eEEEEEcCCcceeEEeecC-CCCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370          177 -EIVIWDALTAEKVAKWSSN-HIGAPRWIEHSPAEAAFITCGTDRSVRFWKEI  227 (228)
Q Consensus       177 -~i~i~d~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~  227 (228)
                       .|.+||. +++.+..+... ....+.+++++|+++++++ +.|++|++|+..
T Consensus       229 ~~i~~~~~-~g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~  279 (286)
T 1q7f_A          229 FNLTIFTQ-DGQLISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYV  279 (286)
T ss_dssp             CEEEEECT-TSCEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECS
T ss_pred             EEEEEECC-CCCEEEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEcc
Confidence             9999995 56666555322 2234779999999987777 569999999863

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.85  E-value=5.6e-20  Score=148.55  Aligned_cols=200  Identities=5%  Similarity=-0.040  Sum_probs=141.3

Q ss_pred             cceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceee-eccceeeEEeCCCCCeEEEEecC---------CeE
Q 040370           20 HNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEIS-VNGAINQVRYSSTGGMYVTASKD---------GAI   89 (228)
Q Consensus        20 ~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~d---------g~v   89 (228)
                      ....+++|+|++++++++  |+.|++||+.+++....+...... .......+.|||||++|+.++.+         +.+
T Consensus        17 ~~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~   94 (740)
T 4a5s_A           17 LKLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASY   94 (740)
T ss_dssp             CCCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEE
T ss_pred             ccccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEE
Confidence            346689999999988886  899999999998876554432211 01123458999999999998876         567


Q ss_pred             EEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceee----------------
Q 040370           90 RLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHT----------------  153 (228)
Q Consensus        90 ~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~----------------  153 (228)
                      .+||+.+++... +..+  ...+...+|+|||+.|+.+ .++.|++||+.+++..+.... .+.                
T Consensus        95 ~~~d~~~~~~~~-l~~~--~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~~~~lt~~-g~~~~~~~g~~~~v~~ee~  169 (740)
T 4a5s_A           95 DIYDLNKRQLIT-EERI--PNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWT-GKEDIIYNGITDWVYEEEV  169 (740)
T ss_dssp             EEEETTTTEECC-SSCC--CTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSC-CBTTTEEESBCCHHHHHHT
T ss_pred             EEEECCCCcEEE-cccC--CCcceeeEECCCCCEEEEE-ECCeEEEEECCCCceEEEcCC-CCccceecCcccccccchh
Confidence            799999887553 3332  5578999999999999888 478999999988765432211 111                


Q ss_pred             -eeeeEEEECCCCcEEEEeeCCCC-----------------------------------eEEEEEcCC---cc--eeEEe
Q 040370          154 -QLRFQAVFNDTEEFVLSIDEPSN-----------------------------------EIVIWDALT---AE--KVAKW  192 (228)
Q Consensus       154 -~~~~~~~~~~~~~~~~~~~~~d~-----------------------------------~i~i~d~~~---~~--~~~~~  192 (228)
                       .....+.|+|+|+.++....++.                                   .|++||+.+   ++  ....+
T Consensus       170 ~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l  249 (740)
T 4a5s_A          170 FSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQI  249 (740)
T ss_dssp             SSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEE
T ss_pred             cCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEe
Confidence             11134789999999887642211                                   688899988   63  22233


Q ss_pred             ec-----CCCCCcEEEEeCCCCcEEEEec----CCCCEEEeee
Q 040370          193 SS-----NHIGAPRWIEHSPAEAAFITCG----TDRSVRFWKE  226 (228)
Q Consensus       193 ~~-----~~~~~v~~~~~~~~~~~l~s~~----~dg~i~vwd~  226 (228)
                      ..     +|...+..++|+|||+.++...    .+..|.+||+
T Consensus       250 ~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~  292 (740)
T 4a5s_A          250 TAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDY  292 (740)
T ss_dssp             CCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEE
T ss_pred             cCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEEC
Confidence            22     3777899999999999666543    3346889985

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.85  E-value=7e-18  Score=123.86  Aligned_cols=206  Identities=11%  Similarity=0.111  Sum_probs=152.1

Q ss_pred             CcceEEEEEeCCCCEEEEecCCCeEEEEEcccce-EEeeeccce-----eeeccceeeEEeCC-CCCeEEEEe-cCCeEE
Q 040370           19 THNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQ-CYLSANVPE-----ISVNGAINQVRYSS-TGGMYVTAS-KDGAIR   90 (228)
Q Consensus        19 ~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~-~~~~~~~~~-----~~~~~~i~~~~~~~-~~~~l~~~~-~dg~v~   90 (228)
                      -.....++++|+++++++...++.|++|+.+... .+..+....     ..+......++++| +++++++.+ .++.|+
T Consensus        90 ~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~  169 (329)
T 3fvz_A           90 FYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIV  169 (329)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEE
T ss_pred             cCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEE
Confidence            3478899999999988888889999999986542 222221100     00133578999999 788888876 689999


Q ss_pred             EEeCCCCceeeEEeccc--------ccceeEEEEECCC-CCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEE
Q 040370           91 LWDGVSANCVRSIVGAH--------GTAEATSANFTKD-QRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVF  161 (228)
Q Consensus        91 iwd~~~~~~~~~~~~~~--------~~~~i~~~~~~~~-~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~  161 (228)
                      +|| .+++.+..+....        .-.....++++|+ +.++++...++.|++||..+++.+..+...........+.+
T Consensus       170 ~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~  248 (329)
T 3fvz_A          170 QFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISY  248 (329)
T ss_dssp             EEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEE
T ss_pred             EEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeee
Confidence            999 5677666664321        1123789999998 77777878889999999988888888754444455667888


Q ss_pred             CCCCcEEEEe------eCCCCeEEEEEcCCcceeEEee--cCCCCCcEEEEeCCCCcEEEEecCCCCEEEeee
Q 040370          162 NDTEEFVLSI------DEPSNEIVIWDALTAEKVAKWS--SNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKE  226 (228)
Q Consensus       162 ~~~~~~~~~~------~~~d~~i~i~d~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~  226 (228)
                      +| +..+...      ...+..|++||..+++.+..+.  ..+...+..++++|+|.++++...+++|++|++
T Consensus       249 ~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~  320 (329)
T 3fvz_A          249 IP-GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTL  320 (329)
T ss_dssp             ET-TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEE
T ss_pred             cC-CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeC
Confidence            88 3322222      2224589999999999888763  356677999999999999999999999999986

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.83  E-value=2.7e-19  Score=144.58  Aligned_cols=197  Identities=12%  Similarity=0.062  Sum_probs=133.8

Q ss_pred             EEEEEeCCCCEEEEecCC---------CeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEe
Q 040370           23 RSVSFHPSGDFLLAGTDH---------PIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWD   93 (228)
Q Consensus        23 ~~~~~~~~~~~l~~~~~d---------~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd   93 (228)
                      ..++|||||++|+.++.+         +.+.+||+.+++.... .   .+ ...+...+|||||+.|+.+. |+.|++||
T Consensus        65 ~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~l-~---~~-~~~~~~~~~SPdG~~la~~~-~~~i~~~~  138 (740)
T 4a5s_A           65 NDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLITE-E---RI-PNNTQWVTWSPVGHKLAYVW-NNDIYVKI  138 (740)
T ss_dssp             CEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCS-S---CC-CTTEEEEEECSSTTCEEEEE-TTEEEEES
T ss_pred             cceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEEEc-c---cC-CCcceeeEECCCCCEEEEEE-CCeEEEEE
Confidence            448899999999988875         5677999999885432 1   12 56789999999999998884 68999999


Q ss_pred             CCCCceeeEEeccccccee-----------------EEEEECCCCCEEEEeeCCC-------------------------
Q 040370           94 GVSANCVRSIVGAHGTAEA-----------------TSANFTKDQRFVLSCGKDS-------------------------  131 (228)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~i-----------------~~~~~~~~~~~l~~~~~d~-------------------------  131 (228)
                      +.+++..+.....+ ...+                 ..+.|+|||++|+.++.|.                         
T Consensus       139 ~~~~~~~~lt~~g~-~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~  217 (740)
T 4a5s_A          139 EPNLPSYRITWTGK-EDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVP  217 (740)
T ss_dssp             STTSCCEECCSCCB-TTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEE
T ss_pred             CCCCceEEEcCCCC-ccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeec
Confidence            98877543222111 1111                 3588999999999875321                         


Q ss_pred             -----------eEEEEEccC---Ce--eEEEEecc----eeeeeeeEEEECCCCcEEEEeeC---CCCeEEEEEcCCcc-
Q 040370          132 -----------TVKLWEVSS---GR--LVKQYLGA----THTQLRFQAVFNDTEEFVLSIDE---PSNEIVIWDALTAE-  187 (228)
Q Consensus       132 -----------~i~~wd~~~---~~--~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~---~d~~i~i~d~~~~~-  187 (228)
                                 .|++||+.+   ++  ....+...    .+...+..+.|+|+++.++....   .+..|.+||+.+++ 
T Consensus       218 yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~  297 (740)
T 4a5s_A          218 YPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSG  297 (740)
T ss_dssp             CCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTT
T ss_pred             CCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCcc
Confidence                       588899887   63  22233211    14567788999999996655432   23479999999887 


Q ss_pred             ---e---eEEeecCCCCCcE-----EEEeCCCCcEEE-Eec-CCCC--EEEeee
Q 040370          188 ---K---VAKWSSNHIGAPR-----WIEHSPAEAAFI-TCG-TDRS--VRFWKE  226 (228)
Q Consensus       188 ---~---~~~~~~~~~~~v~-----~~~~~~~~~~l~-s~~-~dg~--i~vwd~  226 (228)
                         +   .......|...+.     ...|+|||+.|+ ..+ .+|.  |.+||+
T Consensus       298 ~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~  351 (740)
T 4a5s_A          298 RWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQI  351 (740)
T ss_dssp             EEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEET
T ss_pred             ccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEEC
Confidence               1   1111134555544     788999999776 554 4554  555553

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.82  E-value=3.1e-17  Score=117.99  Aligned_cols=202  Identities=13%  Similarity=0.200  Sum_probs=146.0

Q ss_pred             CcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccce--eeeccceeeEEe-CCCCCeEEEEec-CCeEEEEeC
Q 040370           19 THNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPE--ISVNGAINQVRY-SSTGGMYVTASK-DGAIRLWDG   94 (228)
Q Consensus        19 ~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~--~~~~~~i~~~~~-~~~~~~l~~~~~-dg~v~iwd~   94 (228)
                      -..+.+++++|+++++++...++.|.+||.+ ++....+....  ..+...+..+++ .++++++++... ++.|.+|| 
T Consensus        29 ~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d-  106 (286)
T 1q7f_A           29 FTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN-  106 (286)
T ss_dssp             BSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC-
T ss_pred             cCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC-
Confidence            3578999999999988888889999999987 44443332210  011346789999 567776666643 88999999 


Q ss_pred             CCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCC
Q 040370           95 VSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEP  174 (228)
Q Consensus        95 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (228)
                      .+++.+..+.... ...+..++++|+++.+++...++.|.+||.. ++.+..+...........+++++++..+++ ...
T Consensus       107 ~~g~~~~~~~~~~-~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~-~~~  183 (286)
T 1q7f_A          107 QYGQFVRKFGATI-LQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFIS-DNR  183 (286)
T ss_dssp             TTSCEEEEECTTT-CSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEE-EGG
T ss_pred             CCCcEEEEecCcc-CCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEEEE-ECC
Confidence            5677666664432 3567899999999988887788999999964 555555542223345678899999885555 444


Q ss_pred             CCeEEEEEcCCcceeEEeec-CCCCCcEEEEeCCCCcEEEEecCCC-CEEEeee
Q 040370          175 SNEIVIWDALTAEKVAKWSS-NHIGAPRWIEHSPAEAAFITCGTDR-SVRFWKE  226 (228)
Q Consensus       175 d~~i~i~d~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~dg-~i~vwd~  226 (228)
                      ++.|++||. +++.+..+.. ++...+..++++|+++++++...++ .|.+||.
T Consensus       184 ~~~i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~  236 (286)
T 1q7f_A          184 AHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ  236 (286)
T ss_dssp             GTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT
T ss_pred             CCEEEEEcC-CCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC
Confidence            699999997 4555555521 2346789999999999888888776 9999984

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.82  E-value=1.1e-16  Score=117.54  Aligned_cols=205  Identities=9%  Similarity=0.064  Sum_probs=145.7

Q ss_pred             EEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecC----CeE
Q 040370           14 RVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKD----GAI   89 (228)
Q Consensus        14 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d----g~v   89 (228)
                      .+..+...+.+++|+|++++++++..++.|.+||.++++.......   + ...+.+++++|+++++++...+    +.|
T Consensus        39 ~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~---~-~~~~~~i~~~~dg~l~v~~~~~~~~~~~i  114 (333)
T 2dg1_A           39 EISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVS---H-KANPAAIKIHKDGRLFVCYLGDFKSTGGI  114 (333)
T ss_dssp             EEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEEC---S-SSSEEEEEECTTSCEEEEECTTSSSCCEE
T ss_pred             EEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeC---C-CCCcceEEECCCCcEEEEeCCCCCCCceE
Confidence            3445667789999999999888888899999999988765443211   1 5678999999999988877666    689


Q ss_pred             EEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeC------CCeEEEEEccCCeeEEEEecceeeeeeeEEEECC
Q 040370           90 RLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGK------DSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFND  163 (228)
Q Consensus        90 ~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~------d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (228)
                      .+||.+++.....+........+..++++|+++.+++...      .+.|..+|..+++......   .......+.++|
T Consensus       115 ~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~---~~~~~~~i~~~~  191 (333)
T 2dg1_A          115 FAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQ---NISVANGIALST  191 (333)
T ss_dssp             EEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEE---EESSEEEEEECT
T ss_pred             EEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeec---CCCcccceEECC
Confidence            9999887765533332222457889999999987776653      3556677765544332221   223456788999


Q ss_pred             CCcEEEEeeCCCCeEEEEEcCC-cceeEEe----e---cCCCCCcEEEEeCCCCcEEEEecCCCCEEEeee
Q 040370          164 TEEFVLSIDEPSNEIVIWDALT-AEKVAKW----S---SNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKE  226 (228)
Q Consensus       164 ~~~~~~~~~~~d~~i~i~d~~~-~~~~~~~----~---~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~  226 (228)
                      +++.++++...++.|.+||..+ +.....+    .   .++ ..+..++++++++++++...++.|.+||.
T Consensus       192 dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~  261 (333)
T 2dg1_A          192 DEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVFNK  261 (333)
T ss_dssp             TSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEETTTEEEEECT
T ss_pred             CCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceEECCCCCEEEEEcCCCEEEEECC
Confidence            9987776665568999999864 3322111    0   122 46788999999998888877889999975

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.82  E-value=9.6e-19  Score=139.72  Aligned_cols=207  Identities=13%  Similarity=0.065  Sum_probs=137.7

Q ss_pred             EEEeecCcceE---------EEEEe--CCCCE-EEEecC-CCeEEEEEcc--c-ceEEeeeccceeeeccceeeEEeCCC
Q 040370           13 FRVIQDTHNVR---------SVSFH--PSGDF-LLAGTD-HPIAHLYDVN--T-FQCYLSANVPEISVNGAINQVRYSST   76 (228)
Q Consensus        13 ~~~~~~~~~v~---------~~~~~--~~~~~-l~~~~~-d~~i~vw~~~--~-~~~~~~~~~~~~~~~~~i~~~~~~~~   76 (228)
                      .++..|...+.         ...|+  ||++. |+.++. +..|.++++.  . ++...........+...+..++|+|+
T Consensus        61 ~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spD  140 (662)
T 3azo_A           61 ESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPE  140 (662)
T ss_dssp             EESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETT
T ss_pred             ceeCCCCccccccccccCCccceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCC
Confidence            34445555655         66666  99998 776553 5667777765  2 43222111100001456789999999


Q ss_pred             CCeEEEEecC----------CeEEEEeCCC------CceeeEEe-cccccceeEEEEECCCCCEEEEeeCC--------C
Q 040370           77 GGMYVTASKD----------GAIRLWDGVS------ANCVRSIV-GAHGTAEATSANFTKDQRFVLSCGKD--------S  131 (228)
Q Consensus        77 ~~~l~~~~~d----------g~v~iwd~~~------~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~d--------~  131 (228)
                      |+.|++++.+          ..|++||+.+      ++. ..+. .+  ...+..++|+|||++|+.++.+        .
T Consensus       141 g~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~l~~~~--~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~  217 (662)
T 3azo_A          141 RGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAV-RELSDDA--HRFVTGPRLSPDGRQAVWLAWDHPRMPWEGT  217 (662)
T ss_dssp             TTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGS-EESSCSC--SSEECCCEECTTSSEEEEEEECTTCCTTTCE
T ss_pred             CCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCce-eEEEecC--CCcccCceECCCCCEEEEEECCCCCCCCCCc
Confidence            9999988877          5899999987      443 3443 32  4567789999999999987755        3


Q ss_pred             eEEEEEcc-CCe--eEEEEecceeeeeeeEEEECCCCcEEEEeeCCCC--eEEEEEcCCcceeEEeecCCCCC-------
Q 040370          132 TVKLWEVS-SGR--LVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSN--EIVIWDALTAEKVAKWSSNHIGA-------  199 (228)
Q Consensus       132 ~i~~wd~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~--~i~i~d~~~~~~~~~~~~~~~~~-------  199 (228)
                      .|++||+. +++  ....+.. .+...+..+.|+|+++.+++ +..++  .|.+||..+++..... ..+...       
T Consensus       218 ~i~~~d~~~~g~~~~~~~l~~-~~~~~~~~~~~spdg~l~~~-~~~~~~~~l~~~~~~~~~~~~l~-~~~~~~~~p~w~~  294 (662)
T 3azo_A          218 ELKTARVTEDGRFADTRTLLG-GPEEAIAQAEWAPDGSLIVA-TDRTGWWNLHRVDPATGAATQLC-RREEEFAGPLWTP  294 (662)
T ss_dssp             EEEEEEECTTSCEEEEEEEEE-ETTBCEEEEEECTTSCEEEE-ECTTSSCEEEEECTTTCCEEESS-CCSSBSSCCCCST
T ss_pred             EEEEEEECCCCcccccEEeCC-CCCceEcceEECCCCeEEEE-ECCCCCeEEEEEECCCCceeecc-cccccccCccccc
Confidence            79999998 561  2333322 12456778899999995544 45567  6777777666544332 222221       


Q ss_pred             -cEEEEeCCCCcEEEEecCCCCEEEeee
Q 040370          200 -PRWIEHSPAEAAFITCGTDRSVRFWKE  226 (228)
Q Consensus       200 -v~~~~~~~~~~~l~s~~~dg~i~vwd~  226 (228)
                       +..++|+|+++++++++. +.++||.+
T Consensus       295 ~~~~~~~~~~~~~~~~~~~-~~~~l~~~  321 (662)
T 3azo_A          295 GMRWFAPLANGLIAVVHGK-GAAVLGIL  321 (662)
T ss_dssp             TCCSEEECTTSCEEEEEBS-SSCEEEEE
T ss_pred             cCceEeEeCCCEEEEEEEc-CccEEEEE
Confidence             467889999999999998 99999954

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.82  E-value=3e-17  Score=121.93  Aligned_cols=196  Identities=13%  Similarity=0.091  Sum_probs=129.6

Q ss_pred             EEEEeCCCCEEEEec----------CCCeEEEEEcccceEEeeeccceee--eccceeeEEeCCCCCeEEEEec--CCeE
Q 040370           24 SVSFHPSGDFLLAGT----------DHPIAHLYDVNTFQCYLSANVPEIS--VNGAINQVRYSSTGGMYVTASK--DGAI   89 (228)
Q Consensus        24 ~~~~~~~~~~l~~~~----------~d~~i~vw~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~~~--dg~v   89 (228)
                      .++|+|++++++++.          .++.|.+||..+++..........+  +......++++|+|++|+++..  ++.|
T Consensus        54 ~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v  133 (361)
T 2oiz_A           54 HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSI  133 (361)
T ss_dssp             EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEE
T ss_pred             ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeE
Confidence            899999999999876          3678999999988877665532111  1245678999999999998874  5899


Q ss_pred             EEEeCCCCceeeE-EecccccceeEEEEECCCC-CEEEEeeCCCeEEEEE------------------------------
Q 040370           90 RLWDGVSANCVRS-IVGAHGTAEATSANFTKDQ-RFVLSCGKDSTVKLWE------------------------------  137 (228)
Q Consensus        90 ~iwd~~~~~~~~~-~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~~wd------------------------------  137 (228)
                      .+||+.+++.+.. +....    ...+.+.|++ ..+++.+.||.+.+|+                              
T Consensus       134 ~v~d~~~~~~~~~~i~~~~----~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  209 (361)
T 2oiz_A          134 GIVDVAKGDYVEDVTAAAG----CWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPIFIAPAL  209 (361)
T ss_dssp             EEEETTTTEEEEEEGGGTT----EEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCBCSCCEE
T ss_pred             EEEECCCCcEEEEEecCCC----cceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCceEEEecc
Confidence            9999999887766 43211    1112233332 3334444444444444                              


Q ss_pred             ------------------ccCCee--EEEEecce--------eeeeeeEEEECCCCcEEEEeeC----------CCCeEE
Q 040370          138 ------------------VSSGRL--VKQYLGAT--------HTQLRFQAVFNDTEEFVLSIDE----------PSNEIV  179 (228)
Q Consensus       138 ------------------~~~~~~--~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~----------~d~~i~  179 (228)
                                        +.....  ...+....        .......+.++|++..++++..          ..+.|.
T Consensus       210 ~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~  289 (361)
T 2oiz_A          210 DKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIW  289 (361)
T ss_dssp             CSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEE
T ss_pred             cCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEE
Confidence                              432211  01110000        0011112678898888777643          135899


Q ss_pred             EEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370          180 IWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEI  227 (228)
Q Consensus       180 i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~  227 (228)
                      +||..+++.+..+. .+.  +.+++|+|+|++|++++. +.|.+||+.
T Consensus       290 viD~~t~~~v~~i~-~~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~  333 (361)
T 2oiz_A          290 VMDTKTKQRVARIP-GRD--ALSMTIDQQRNLMLTLDG-GNVNVYDIS  333 (361)
T ss_dssp             EEETTTTEEEEEEE-CTT--CCEEEEETTTTEEEEECS-SCEEEEECS
T ss_pred             EEECCCCcEEEEEe-cCC--eeEEEECCCCCEEEEeCC-CeEEEEECC
Confidence            99999999998884 444  899999999999998887 999999963

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.81  E-value=4e-17  Score=119.82  Aligned_cols=203  Identities=13%  Similarity=0.053  Sum_probs=147.6

Q ss_pred             CcceEEEEEeCCCCEEEEecCC------------------------CeEEEEEcccceEEeeeccceeeeccceeeEEeC
Q 040370           19 THNVRSVSFHPSGDFLLAGTDH------------------------PIAHLYDVNTFQCYLSANVPEISVNGAINQVRYS   74 (228)
Q Consensus        19 ~~~v~~~~~~~~~~~l~~~~~d------------------------~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~   74 (228)
                      -..+.+++++|+|+++++...+                        +.|.+||..+++........  + -.....++++
T Consensus        23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~--~-~~~p~gia~d   99 (329)
T 3fvz_A           23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKN--L-FYLPHGLSID   99 (329)
T ss_dssp             CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTT--T-CSSEEEEEEC
T ss_pred             cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCC--c-cCCceEEEEC
Confidence            3679999999999999888777                        47999999888865443321  1 3467899999


Q ss_pred             CCCCeEEEEecCCeEEEEeCCCCc-eeeEEec-------ccccceeEEEEECC-CCCEEEEee-CCCeEEEEEccCCeeE
Q 040370           75 STGGMYVTASKDGAIRLWDGVSAN-CVRSIVG-------AHGTAEATSANFTK-DQRFVLSCG-KDSTVKLWEVSSGRLV  144 (228)
Q Consensus        75 ~~~~~l~~~~~dg~v~iwd~~~~~-~~~~~~~-------~~~~~~i~~~~~~~-~~~~l~~~~-~d~~i~~wd~~~~~~~  144 (228)
                      |+|+++++...++.|++||..... .+..+..       ...-.....++++| ++..+++.+ .++.|++|| .+++.+
T Consensus       100 ~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~  178 (329)
T 3fvz_A          100 TDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFV  178 (329)
T ss_dssp             TTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEE
T ss_pred             CCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEE
Confidence            999988888889999999976442 4444421       11133578999999 788777776 689999999 567766


Q ss_pred             EEEecc--------eeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEee-cCCCCCcEEEEeCCCCcEEEEe
Q 040370          145 KQYLGA--------THTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWS-SNHIGAPRWIEHSPAEAAFITC  215 (228)
Q Consensus       145 ~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~s~  215 (228)
                      ..+...        ........++++|++..++++...++.|++||..+++.+..+. ..+...+..++++| +..+++.
T Consensus       179 ~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g~~~~~~  257 (329)
T 3fvz_A          179 TQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP-GFLFAVN  257 (329)
T ss_dssp             EEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET-TEEEEEE
T ss_pred             EEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecC-CEEEEeC
Confidence            665321        1223367889999866666667768999999998888877763 24556788999999 4433333


Q ss_pred             -------cCCCCEEEeee
Q 040370          216 -------GTDRSVRFWKE  226 (228)
Q Consensus       216 -------~~dg~i~vwd~  226 (228)
                             ..+..|++||+
T Consensus       258 g~~~v~~~~~~~v~~~~~  275 (329)
T 3fvz_A          258 GKPYFGDQEPVQGFVMNF  275 (329)
T ss_dssp             CCCCTTCSCCCCEEEEET
T ss_pred             CCEEeccCCCcEEEEEEc
Confidence                   34558889884

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.81  E-value=7e-17  Score=116.78  Aligned_cols=193  Identities=7%  Similarity=0.019  Sum_probs=136.4

Q ss_pred             EeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEE----e------
Q 040370           15 VIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTA----S------   84 (228)
Q Consensus        15 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~----~------   84 (228)
                      +..+...+.+++++|+++++++...++.|.+||..+++...............+..++++|+|+++++.    +      
T Consensus        64 ~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~  143 (296)
T 3e5z_A           64 EMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEG  143 (296)
T ss_dssp             EESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGS
T ss_pred             EECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCcccccccccc
Confidence            334667899999999999888877778999999987775433222111113457889999999988873    2      


Q ss_pred             -------cCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEcc-CCee---EEEEecceee
Q 040370           85 -------KDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVS-SGRL---VKQYLGATHT  153 (228)
Q Consensus        85 -------~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~-~~~~---~~~~~~~~~~  153 (228)
                             ..+.|..++.. ++. ..+...  ......++|+|+++.+++.+.++.|++||+. +++.   ...+  ....
T Consensus       144 ~~~~~~~~~~~l~~~~~~-g~~-~~~~~~--~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~--~~~~  217 (296)
T 3e5z_A          144 YGGEMELPGRWVFRLAPD-GTL-SAPIRD--RVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHF--TVEP  217 (296)
T ss_dssp             SCCCCCSSSCEEEEECTT-SCE-EEEECC--CSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEE--CCSS
T ss_pred             ccccccCCCcEEEEECCC-CCE-EEeecC--CCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEe--eCCC
Confidence                   13466666655 443 333332  4456889999999988777788999999997 4443   2223  1133


Q ss_pred             eeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEe-CCCCcEEEEecCCC
Q 040370          154 QLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEH-SPAEAAFITCGTDR  219 (228)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~l~s~~~dg  219 (228)
                      .....+++++++...++.   ++.|.+||.. ++.+..+ ..+.. +.+++| .|+++.|+.++.++
T Consensus       218 ~~p~~i~~d~~G~l~v~~---~~~v~~~~~~-g~~~~~~-~~~~~-~~~~~f~~~d~~~L~v~t~~~  278 (296)
T 3e5z_A          218 GKTDGLRVDAGGLIWASA---GDGVHVLTPD-GDELGRV-LTPQT-TSNLCFGGPEGRTLYMTVSTE  278 (296)
T ss_dssp             SCCCSEEEBTTSCEEEEE---TTEEEEECTT-SCEEEEE-ECSSC-CCEEEEESTTSCEEEEEETTE
T ss_pred             CCCCeEEECCCCCEEEEc---CCeEEEECCC-CCEEEEE-ECCCC-ceeEEEECCCCCEEEEEcCCe
Confidence            445678899999866665   4899999976 7666666 44555 899999 68988888888775

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.81  E-value=1.9e-17  Score=122.26  Aligned_cols=184  Identities=12%  Similarity=0.161  Sum_probs=127.8

Q ss_pred             cceEEEEEeCCCCEEEEecCC---C--eEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecC--------
Q 040370           20 HNVRSVSFHPSGDFLLAGTDH---P--IAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKD--------   86 (228)
Q Consensus        20 ~~v~~~~~~~~~~~l~~~~~d---~--~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d--------   86 (228)
                      ..+..++|+|+|++|+.++.+   +  .|.+|++.+++.......     .. +..+.|+|+|+.|+.++.+        
T Consensus        59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~-----~~-~~~~~wspdg~~l~~~~~~~~~~~~~~  132 (347)
T 2gop_A           59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEA-----KN-IRSLEWNEDSRKLLIVGFKRREDEDFI  132 (347)
T ss_dssp             ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEE-----SE-EEEEEECTTSSEEEEEEECCCC-----
T ss_pred             ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcC-----CC-ccceeECCCCCEEEEEEccCCCcCCcE
Confidence            467889999999999877643   3  477888888775443321     23 8899999999988887642        


Q ss_pred             -------------------CeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCC-------eEEEEEccC
Q 040370           87 -------------------GAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDS-------TVKLWEVSS  140 (228)
Q Consensus        87 -------------------g~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~-------~i~~wd~~~  140 (228)
                                         ..|.+||+.+++.+..+..   . .+..+.|+|++ +++++..+.       ...+|.+.+
T Consensus       133 ~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~---~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~  207 (347)
T 2gop_A          133 FEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK---P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWED  207 (347)
T ss_dssp             ----CCCC---------CEEEEEEEETTTTEEEEEEEE---E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEET
T ss_pred             EEcccceeecCcccccCccceEEEEECCCCeEEeeecC---C-CcccccCCCCe-EEEEEecccccccccccccEEEeCC
Confidence                               5799999988876444443   2 57788999999 777776542       344554445


Q ss_pred             CeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCC-------CeEEEEEcCCcceeEEeecCCCCCcEE-EEeCCCCcEE
Q 040370          141 GRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPS-------NEIVIWDALTAEKVAKWSSNHIGAPRW-IEHSPAEAAF  212 (228)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-------~~i~i~d~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~l  212 (228)
                      ++. ..+..  + .....  ++|+++.++..+..+       ..|.+||  +++. ..+...+...+.. +.|+ ++ ++
T Consensus       208 ~~~-~~l~~--~-~~~~~--~spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~-~~l~~~~~~~~~~~~~~s-dg-~~  276 (347)
T 2gop_A          208 GKE-EKMFE--K-VSFYA--VDSDGERILLYGKPEKKYMSEHNKLYIYD--GKEV-MGILDEVDRGVGQAKIKD-GK-VY  276 (347)
T ss_dssp             TEE-EEEEE--E-ESEEE--EEECSSCEEEEECCSSSCCCSSCEEEEEC--SSCE-EESSTTCCSEEEEEEEET-TE-EE
T ss_pred             Cce-EEecc--C-cceee--ECCCCCEEEEEEccccCCccccceEEEEC--CCce-EeccccCCcccCCccEEc-Cc-EE
Confidence            443 33332  2 22223  389999887766432       4788888  5543 3333566777886 9999 88 88


Q ss_pred             EEecCCCCEEEeee
Q 040370          213 ITCGTDRSVRFWKE  226 (228)
Q Consensus       213 ~s~~~dg~i~vwd~  226 (228)
                      ++++.++.+++| +
T Consensus       277 ~~~~~~~~~~l~-~  289 (347)
T 2gop_A          277 FTLFEEGSVNLY-I  289 (347)
T ss_dssp             EEEEETTEEEEE-E
T ss_pred             EEEecCCcEEEE-E
Confidence            999999999999 5

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.80  E-value=7.6e-18  Score=134.54  Aligned_cols=200  Identities=8%  Similarity=-0.005  Sum_probs=134.6

Q ss_pred             cCcceEEEEEeCCCCEEEEecCC----------CeEEEEEccc------ceEEeeeccceeeeccceeeEEeCCCCCeEE
Q 040370           18 DTHNVRSVSFHPSGDFLLAGTDH----------PIAHLYDVNT------FQCYLSANVPEISVNGAINQVRYSSTGGMYV   81 (228)
Q Consensus        18 ~~~~v~~~~~~~~~~~l~~~~~d----------~~i~vw~~~~------~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~   81 (228)
                      |...+..++|+|||+.|+.++.+          ..|++||+.+      ++......   .+ ...+..++|+|||++|+
T Consensus       128 ~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~---~~-~~~~~~~~~SpDG~~la  203 (662)
T 3azo_A          128 GGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELSD---DA-HRFVTGPRLSPDGRQAV  203 (662)
T ss_dssp             TCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESSC---SC-SSEECCCEECTTSSEEE
T ss_pred             CCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeEEEe---cC-CCcccCceECCCCCEEE
Confidence            56788999999999999988876          5899999987      55432220   11 45678899999999999


Q ss_pred             EEecC--------CeEEEEeCC-CCc--eeeEEecccccceeEEEEECCCCCEEEEeeCCC--eEEEEEccCCeeEEEEe
Q 040370           82 TASKD--------GAIRLWDGV-SAN--CVRSIVGAHGTAEATSANFTKDQRFVLSCGKDS--TVKLWEVSSGRLVKQYL  148 (228)
Q Consensus        82 ~~~~d--------g~v~iwd~~-~~~--~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~--~i~~wd~~~~~~~~~~~  148 (228)
                      .++.+        ..|++||+. +++  ....+...+ ...+..+.|+|||++++++..++  .|++||+.+++......
T Consensus       204 ~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~-~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~  282 (662)
T 3azo_A          204 WLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGP-EEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCR  282 (662)
T ss_dssp             EEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEET-TBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSC
T ss_pred             EEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCC-CceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeeccc
Confidence            88755        379999998 562  333333322 46788999999999888888888  67777776665443332


Q ss_pred             cceeee------eeeEEEECCCCcEEEEeeCCCCeEEEE--EcCCcceeEEeecCCCCCcEEE-EeCCCCcEEEEecCCC
Q 040370          149 GATHTQ------LRFQAVFNDTEEFVLSIDEPSNEIVIW--DALTAEKVAKWSSNHIGAPRWI-EHSPAEAAFITCGTDR  219 (228)
Q Consensus       149 ~~~~~~------~~~~~~~~~~~~~~~~~~~~d~~i~i~--d~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~l~s~~~dg  219 (228)
                      .+....      .+..+.++|++..++++. . +.+++|  |..+++ ...+ ..+...+..+ +++++.-++++++.+.
T Consensus       283 ~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~-~-~~~~l~~~d~~~~~-~~~l-~~~~~~~~~~~s~~~~~~~~~~~~~~~  358 (662)
T 3azo_A          283 REEEFAGPLWTPGMRWFAPLANGLIAVVHG-K-GAAVLGILDPESGE-LVDA-AGPWTEWAATLTVSGTRAVGVAASPRT  358 (662)
T ss_dssp             CSSBSSCCCCSTTCCSEEECTTSCEEEEEB-S-SSCEEEEEETTTTE-EEEC-CSSCCEEEEEEEEETTEEEEEEEETTE
T ss_pred             ccccccCccccccCceEeEeCCCEEEEEEE-c-CccEEEEEECCCCc-EEEe-cCCCCeEEEEEecCCCEEEEEEcCCCC
Confidence            211100      034677888888777654 4 888888  555454 4444 5667777777 5554444555566666


Q ss_pred             CEEEeee
Q 040370          220 SVRFWKE  226 (228)
Q Consensus       220 ~i~vwd~  226 (228)
                      ...+|.+
T Consensus       359 ~~~i~~~  365 (662)
T 3azo_A          359 AYEVVEL  365 (662)
T ss_dssp             EEEEEEE
T ss_pred             CCEEEEE
Confidence            5566643

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.80  E-value=2.1e-16  Score=114.22  Aligned_cols=200  Identities=8%  Similarity=0.008  Sum_probs=142.3

Q ss_pred             EEEeecCcceEEEEEeCCCC-EEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEE
Q 040370           13 FRVIQDTHNVRSVSFHPSGD-FLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRL   91 (228)
Q Consensus        13 ~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i   91 (228)
                      ..+..+.....+++|+|+++ .++++..++.|..|+..++  ...+...    ...+.+++++|+|+++++...++.|.+
T Consensus        21 ~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~----~~~~~~l~~~~dg~l~v~~~~~~~i~~   94 (296)
T 3e5z_A           21 RRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHP----SHHQNGHCLNKQGHLIACSHGLRRLER   94 (296)
T ss_dssp             EEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESS----CSSEEEEEECTTCCEEEEETTTTEEEE
T ss_pred             EEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECC----CCCcceeeECCCCcEEEEecCCCeEEE
Confidence            34445667788999999998 7788888999999999887  3333222    566899999999998887777789999


Q ss_pred             EeCCCCceeeEEeccc--ccceeEEEEECCCCCEEEE----ee-------------CCCeEEEEEccCCeeEEEEeccee
Q 040370           92 WDGVSANCVRSIVGAH--GTAEATSANFTKDQRFVLS----CG-------------KDSTVKLWEVSSGRLVKQYLGATH  152 (228)
Q Consensus        92 wd~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~----~~-------------~d~~i~~wd~~~~~~~~~~~~~~~  152 (228)
                      ||..+++.........  ....+..++++|+|+++++    |+             ..+.|..+|.. ++. ..+..  .
T Consensus        95 ~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~-~~~~~--~  170 (296)
T 3e5z_A           95 QREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTL-SAPIR--D  170 (296)
T ss_dssp             ECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCE-EEEEC--C
T ss_pred             EcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCE-EEeec--C
Confidence            9998877544332211  1224567999999998887    33             13456666654 443 23322  3


Q ss_pred             eeeeeEEEECCCCcEEEEeeCCCCeEEEEEcC-Ccce---eEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeee
Q 040370          153 TQLRFQAVFNDTEEFVLSIDEPSNEIVIWDAL-TAEK---VAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKE  226 (228)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~-~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~  226 (228)
                      ......++++|+++.+ .+...++.|.+||+. +++.   ...+ ..+...+..++++++|+++++.  ++.|.+||.
T Consensus       171 ~~~~~gi~~s~dg~~l-v~~~~~~~i~~~~~~~~g~~~~~~~~~-~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~  244 (296)
T 3e5z_A          171 RVKPNGLAFLPSGNLL-VSDTGDNATHRYCLNARGETEYQGVHF-TVEPGKTDGLRVDAGGLIWASA--GDGVHVLTP  244 (296)
T ss_dssp             CSSEEEEEECTTSCEE-EEETTTTEEEEEEECSSSCEEEEEEEE-CCSSSCCCSEEEBTTSCEEEEE--TTEEEEECT
T ss_pred             CCCCccEEECCCCCEE-EEeCCCCeEEEEEECCCCcCcCCCeEe-eCCCCCCCeEEECCCCCEEEEc--CCeEEEECC
Confidence            3345678999999998 666667999999987 4443   2333 3455667889999999977766  788999974

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.79  E-value=9.1e-17  Score=129.35  Aligned_cols=197  Identities=9%  Similarity=0.062  Sum_probs=137.5

Q ss_pred             cceEEEEEeCCCCEEEEecCCC-----eEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCe------
Q 040370           20 HNVRSVSFHPSGDFLLAGTDHP-----IAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGA------   88 (228)
Q Consensus        20 ~~v~~~~~~~~~~~l~~~~~d~-----~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~------   88 (228)
                      ..+..++|||||++||.+..++     .|++||+.+++......    . ...+..++|+|||+.|+.++.++.      
T Consensus       125 ~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~----~-~~~~~~~~wspDg~~l~~~~~~~~~~~~~~  199 (710)
T 2xdw_A          125 VALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVL----E-RVKFSCMAWTHDGKGMFYNAYPQQDGKSDG  199 (710)
T ss_dssp             EEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEE----E-EECSCCEEECTTSSEEEEEECCCCSSCCSS
T ss_pred             EEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccc----c-CcccceEEEEeCCCEEEEEEECCccccccc
Confidence            4688999999999998765433     89999999988654321    1 223678999999999999888766      


Q ss_pred             ----------EEEEeCCCCcee--eEEecccccceeEEEEECCCCCEEEEeeC-----CCeEEEEEccC------Ce-eE
Q 040370           89 ----------IRLWDGVSANCV--RSIVGAHGTAEATSANFTKDQRFVLSCGK-----DSTVKLWEVSS------GR-LV  144 (228)
Q Consensus        89 ----------v~iwd~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-----d~~i~~wd~~~------~~-~~  144 (228)
                                |++|++.+++..  ..+....+...+..+.|+||+++|+..+.     +..|++||+.+      +. ..
T Consensus       200 ~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~  279 (710)
T 2xdw_A          200 TETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKW  279 (710)
T ss_dssp             SCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCC
T ss_pred             cccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccce
Confidence                      999999887632  22232222445788999999999887764     57899999986      43 34


Q ss_pred             EEEecceeeeeeeEEEECCCCcEEEEeeCC---CCeEEEEEcCCcce--eEEeecCCC-CCcEEEEeCCCCcEEEEecCC
Q 040370          145 KQYLGATHTQLRFQAVFNDTEEFVLSIDEP---SNEIVIWDALTAEK--VAKWSSNHI-GAPRWIEHSPAEAAFITCGTD  218 (228)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---d~~i~i~d~~~~~~--~~~~~~~~~-~~v~~~~~~~~~~~l~s~~~d  218 (228)
                      ..+..+  ..... ..+++++..++..+..   ++.|.+||+.++..  ...+...+. ..+..+.|++++.++++...|
T Consensus       280 ~~l~~~--~~~~~-~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~  356 (710)
T 2xdw_A          280 VKLIDN--FEGEY-DYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHD  356 (710)
T ss_dssp             EEEECS--SSSCE-EEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEET
T ss_pred             EEeeCC--CCcEE-EEEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEEC
Confidence            444432  22222 2467788877665543   34799999987642  233322323 367889998888888999889


Q ss_pred             CCEEEe
Q 040370          219 RSVRFW  224 (228)
Q Consensus       219 g~i~vw  224 (228)
                      +..+||
T Consensus       357 g~~~l~  362 (710)
T 2xdw_A          357 VKNTLQ  362 (710)
T ss_dssp             TEEEEE
T ss_pred             CEEEEE
Confidence            865554

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.78  E-value=4.4e-17  Score=130.89  Aligned_cols=200  Identities=7%  Similarity=0.039  Sum_probs=136.5

Q ss_pred             cCcceEEEEEeCCCCEEE-----EecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCe----
Q 040370           18 DTHNVRSVSFHPSGDFLL-----AGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGA----   88 (228)
Q Consensus        18 ~~~~v~~~~~~~~~~~l~-----~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~----   88 (228)
                      |...+..++|||||++||     .|+.+..|++||+.+++........    ......++|+|+|+.|+.++.|..    
T Consensus       119 ~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~----~~~~~~~~wspDg~~l~~~~~d~~~~~~  194 (695)
T 2bkl_A          119 GTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIE----GGKYATPKWTPDSKGFYYEWLPTDPSIK  194 (695)
T ss_dssp             SCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBS----CCTTCCCEECTTSSEEEEEECCCCTTSC
T ss_pred             CCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccC----cccccceEEecCCCEEEEEEecCCCCCc
Confidence            444689999999999999     4555679999999998753111111    112268999999999999988776    


Q ss_pred             ---------EEEEeCCCCcee--eEEecccccceeEEEEECCCCCEEEEeeCCC----eEEEEEccCCeeEEEEecceee
Q 040370           89 ---------IRLWDGVSANCV--RSIVGAHGTAEATSANFTKDQRFVLSCGKDS----TVKLWEVSSGRLVKQYLGATHT  153 (228)
Q Consensus        89 ---------v~iwd~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~----~i~~wd~~~~~~~~~~~~~~~~  153 (228)
                               |++|++.+++..  ..+....+...+..+.|+|||++|+.++.++    .|+++|..+++.. .+..  +.
T Consensus       195 ~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~-~l~~--~~  271 (695)
T 2bkl_A          195 VDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFR-LLVK--GV  271 (695)
T ss_dssp             GGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCE-EEEE--CS
T ss_pred             cccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceE-Eeec--CC
Confidence                     999999887632  2233322245788999999999998877666    6777776555433 3332  22


Q ss_pred             eeeeEEEECCCCcEEEEeeC---CCCeEEEEEcCCcce--eEEeecCC-CCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370          154 QLRFQAVFNDTEEFVLSIDE---PSNEIVIWDALTAEK--VAKWSSNH-IGAPRWIEHSPAEAAFITCGTDRSVRFWKEI  227 (228)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~---~d~~i~i~d~~~~~~--~~~~~~~~-~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~  227 (228)
                      .......+ +++. ++..+.   .++.|.+||+.+++.  ...+...+ ...+..++|+ ++.++++...|+..++|.+.
T Consensus       272 ~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~  348 (695)
T 2bkl_A          272 GAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVAT  348 (695)
T ss_dssp             SCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEE
T ss_pred             CceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEe
Confidence            23334445 4555 444433   358999999987753  23332333 4567888888 77888999999999988653

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.78  E-value=1.8e-16  Score=116.35  Aligned_cols=202  Identities=11%  Similarity=0.050  Sum_probs=143.5

Q ss_pred             ecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeecccee-eeccceeeEEeCCCCCeEEEEe-cCCeEEEEeC
Q 040370           17 QDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEI-SVNGAINQVRYSSTGGMYVTAS-KDGAIRLWDG   94 (228)
Q Consensus        17 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~-~dg~v~iwd~   94 (228)
                      ........++++++++.+++...++.|.+||..+++.......... ........+++ .+++.+++.. .++.|.++|+
T Consensus        81 ~~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~  159 (328)
T 3dsm_A           81 TGFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDT  159 (328)
T ss_dssp             ECCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEET
T ss_pred             CCCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-ECCEEEEEcCCCCCEEEEEEC
Confidence            4457789999999885444444789999999999887655543210 00114566777 3444444443 4889999999


Q ss_pred             CCCceeeEEecccccceeEEEEECCCCCEEEEeeCC----------CeEEEEEccCCeeEEEEecceeeeeeeEEEECCC
Q 040370           95 VSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKD----------STVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDT  164 (228)
Q Consensus        95 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d----------~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (228)
                      .+++....+...   .....+.++|++++++++..+          +.|.++|..+++....+... .......++++|+
T Consensus       160 ~t~~~~~~i~~g---~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~-~g~~p~~la~~~d  235 (328)
T 3dsm_A          160 ETDKVVDELTIG---IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFK-LGDWPSEVQLNGT  235 (328)
T ss_dssp             TTTEEEEEEECS---SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECC-TTCCCEEEEECTT
T ss_pred             CCCeEEEEEEcC---CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecC-CCCCceeEEEecC
Confidence            999888877653   345678899999977776654          78999999998877666432 1235678999999


Q ss_pred             CcEEEEeeCCCCeEEEEEcCCcceeEE-eecCCCCCcEEEEeCC-CCcEEEEe----cCCCCEEEeee
Q 040370          165 EEFVLSIDEPSNEIVIWDALTAEKVAK-WSSNHIGAPRWIEHSP-AEAAFITC----GTDRSVRFWKE  226 (228)
Q Consensus       165 ~~~~~~~~~~d~~i~i~d~~~~~~~~~-~~~~~~~~v~~~~~~~-~~~~l~s~----~~dg~i~vwd~  226 (228)
                      ++.++++..   .|.+||..+++.... +..........++++| ++.++++.    ..++.|.+||.
T Consensus       236 ~~~lyv~~~---~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~  300 (328)
T 3dsm_A          236 RDTLYWINN---DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSP  300 (328)
T ss_dssp             SCEEEEESS---SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECT
T ss_pred             CCEEEEEcc---EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECC
Confidence            998888643   899999988775422 1122246788999999 56666666    67889999985

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.78  E-value=2.8e-18  Score=128.74  Aligned_cols=195  Identities=9%  Similarity=-0.066  Sum_probs=132.4

Q ss_pred             eEEEEEeCCCCEEEEecCC---CeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCCCc
Q 040370           22 VRSVSFHPSGDFLLAGTDH---PIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSAN   98 (228)
Q Consensus        22 v~~~~~~~~~~~l~~~~~d---~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~   98 (228)
                      +..++|+|+|++|+.....   ..|.+||+.+++........    ......+.|+|+|+.|+.++.++.|++||+.+++
T Consensus        38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~----~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~  113 (396)
T 3c5m_A           38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGK----GDNTFGGFISTDERAFFYVKNELNLMKVDLETLE  113 (396)
T ss_dssp             TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSS----CBCTTTCEECTTSSEEEEEETTTEEEEEETTTCC
T ss_pred             eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCC----CCccccceECCCCCEEEEEEcCCcEEEEECCCCC
Confidence            7788999999998876443   47888999888754332211    2223347899999999999999999999998887


Q ss_pred             eeeEEecccccceeEE-------------------EEECCCCCEEEEe-----eCCCeEEEEEccCCeeEEEEecceeee
Q 040370           99 CVRSIVGAHGTAEATS-------------------ANFTKDQRFVLSC-----GKDSTVKLWEVSSGRLVKQYLGATHTQ  154 (228)
Q Consensus        99 ~~~~~~~~~~~~~i~~-------------------~~~~~~~~~l~~~-----~~d~~i~~wd~~~~~~~~~~~~~~~~~  154 (228)
                      .......+.  .....                   ..|+|+++.++..     ..+..|++||+.+++......   +..
T Consensus       114 ~~~~~~~~~--~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~---~~~  188 (396)
T 3c5m_A          114 EQVIYTVDE--EWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQ---DTA  188 (396)
T ss_dssp             EEEEEECCT--TEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEEE---ESS
T ss_pred             cEEEEeccc--ccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeecc---CCc
Confidence            655554332  11111                   3567778776654     356789999998877654442   445


Q ss_pred             eeeEEEECC-CCcEEEEeeCC-C----CeEEEEEcCCcceeEEeecCC-CCCcEEEEeCCCCcEEEEecCC-----CCEE
Q 040370          155 LRFQAVFND-TEEFVLSIDEP-S----NEIVIWDALTAEKVAKWSSNH-IGAPRWIEHSPAEAAFITCGTD-----RSVR  222 (228)
Q Consensus       155 ~~~~~~~~~-~~~~~~~~~~~-d----~~i~i~d~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~s~~~d-----g~i~  222 (228)
                      .+..+.|+| ++..++..... .    ..|.+||+..++..... ... ...+..+.|+|++++|+.++.+     +.|.
T Consensus       189 ~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~-~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~  267 (396)
T 3c5m_A          189 WLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIK-EHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIY  267 (396)
T ss_dssp             CEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESS-CCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEE
T ss_pred             ccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEee-ccCCCccccceEECCCCCEEEEEecCCCCccceEE
Confidence            567888999 77766554432 2    46889998765533322 221 2357889999999988776543     3499


Q ss_pred             Eeee
Q 040370          223 FWKE  226 (228)
Q Consensus       223 vwd~  226 (228)
                      +||+
T Consensus       268 ~~d~  271 (396)
T 3c5m_A          268 KANP  271 (396)
T ss_dssp             EECT
T ss_pred             EEEC
Confidence            9985

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.78  E-value=2.6e-17  Score=123.21  Aligned_cols=201  Identities=11%  Similarity=-0.038  Sum_probs=132.3

Q ss_pred             cCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeE--EeCCCCCeEEEE------------
Q 040370           18 DTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQV--RYSSTGGMYVTA------------   83 (228)
Q Consensus        18 ~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~--~~~~~~~~l~~~------------   83 (228)
                      +...+..++|+|+++.|+.++.++.|++||+.+++.......+    ...+...  .++|+++.++..            
T Consensus        79 ~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~----~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~  154 (388)
T 3pe7_A           79 RGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVP----AEWVGYGTWVANSDCTKLVGIEIRREDWVPLTD  154 (388)
T ss_dssp             SCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECC----TTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCS
T ss_pred             CCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeech----hhcccccceeECCCCCeeccccccCcccccccc
Confidence            4444456789999999999999999999999998765544332    2333333  348999887743            


Q ss_pred             ----------ecCCeEEEEeCCCCceeeEEecccccceeEEEEECC-CCCEEEEeeCC------CeEEEEEccCCeeEEE
Q 040370           84 ----------SKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTK-DQRFVLSCGKD------STVKLWEVSSGRLVKQ  146 (228)
Q Consensus        84 ----------~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d------~~i~~wd~~~~~~~~~  146 (228)
                                ..+..|.+||+.+++.......   ...+..+.|+| +++.|+....+      ..|.++|+..++. ..
T Consensus       155 ~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~---~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~  230 (388)
T 3pe7_A          155 WKKFHEFYFTKPCCRLMRVDLKTGESTVILQE---NQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNM-RK  230 (388)
T ss_dssp             HHHHHHHGGGCCCEEEEEEETTTCCEEEEEEE---SSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCC-EE
T ss_pred             cchhhhhhccCCcceEEEEECCCCceEEeecC---CccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCce-EE
Confidence                      2346899999998875544432   45688999999 99988877653      3788888765543 33


Q ss_pred             EecceeeeeeeEEEECCCCcEEEEeeCCCC----eEEEEEcCCcceeEEee-cCCC---CCcEEEEeCCCCcEEEEe---
Q 040370          147 YLGATHTQLRFQAVFNDTEEFVLSIDEPSN----EIVIWDALTAEKVAKWS-SNHI---GAPRWIEHSPAEAAFITC---  215 (228)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~----~i~i~d~~~~~~~~~~~-~~~~---~~v~~~~~~~~~~~l~s~---  215 (228)
                      +........+....|+|+++.++..+..++    .|++||+.+++...... .++.   .....+.|+|+|+.|+..   
T Consensus       231 l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~  310 (388)
T 3pe7_A          231 VKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQD  310 (388)
T ss_dssp             SCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------
T ss_pred             eeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeee
Confidence            332211235667889999997755443222    39999999887533221 1110   002224799999887754   


Q ss_pred             ------cCCCCEEEeee
Q 040370          216 ------GTDRSVRFWKE  226 (228)
Q Consensus       216 ------~~dg~i~vwd~  226 (228)
                            ..+..|.+||+
T Consensus       311 ~~~~~~~~~~~i~~~d~  327 (388)
T 3pe7_A          311 DSGYKIENDPFLYVFNM  327 (388)
T ss_dssp             ------CCCCEEEEEET
T ss_pred             ccccccCCCCEEEEEec
Confidence                  45668999985

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.77  E-value=5.5e-16  Score=110.85  Aligned_cols=185  Identities=12%  Similarity=0.106  Sum_probs=143.3

Q ss_pred             CCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCCCceeeEEeccccc
Q 040370           30 SGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGT  109 (228)
Q Consensus        30 ~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~  109 (228)
                      .++.|++++.++.|.+||.++++.+..+....   ...+.++.++|+|++++  +.++.|..||. +++.+..+.... .
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~---~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~-~   76 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEK---GWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPA-G   76 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTTTEEEEEEECCT---TCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCT-T
T ss_pred             CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCc---cCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCC-C
Confidence            46789999999999999999999887776431   13688999999999888  35788999998 899888887642 3


Q ss_pred             ceeEEEEECCCCCEEEEeeC-CCeEEEEEccCCeeEEEEecce----eeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcC
Q 040370          110 AEATSANFTKDQRFVLSCGK-DSTVKLWEVSSGRLVKQYLGAT----HTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDAL  184 (228)
Q Consensus       110 ~~i~~~~~~~~~~~l~~~~~-d~~i~~wd~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~  184 (228)
                      ..+.++.+.++++++++.+. ++.+..+|. +++.+..+....    +......+...+++.++++... ++.|..||..
T Consensus        77 ~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~-~~~v~~~d~~  154 (276)
T 3no2_A           77 CEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFA-TSEVREIAPN  154 (276)
T ss_dssp             CEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETT-TTEEEEECTT
T ss_pred             ccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecC-CCEEEEECCC
Confidence            57888999999999999887 778888885 677777664311    1112334567888998877554 7999999987


Q ss_pred             CcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeee
Q 040370          185 TAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKE  226 (228)
Q Consensus       185 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~  226 (228)
                       |+.+.++..  ...+.++...++++.+++++.+++|..+|.
T Consensus       155 -G~~~w~~~~--~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~  193 (276)
T 3no2_A          155 -GQLLNSVKL--SGTPFSSAFLDNGDCLVACGDAHCFVQLNL  193 (276)
T ss_dssp             -SCEEEEEEC--SSCCCEEEECTTSCEEEECBTTSEEEEECT
T ss_pred             -CCEEEEEEC--CCCccceeEcCCCCEEEEeCCCCeEEEEeC
Confidence             988888732  245667888899999999888888888774

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.77  E-value=1.6e-15  Score=118.44  Aligned_cols=190  Identities=13%  Similarity=0.053  Sum_probs=144.1

Q ss_pred             CCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCC--CCceeeEEecc
Q 040370           29 PSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGV--SANCVRSIVGA  106 (228)
Q Consensus        29 ~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~--~~~~~~~~~~~  106 (228)
                      |.+.++++...++.|.++|..+++.+..+..     ...+..+.|+|+|+++++++.|+.|.+||+.  +++.+..+.. 
T Consensus       165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~-----g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~-  238 (567)
T 1qks_A          165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDT-----GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKI-  238 (567)
T ss_dssp             GGGEEEEEETTTTEEEEEETTTCCEEEEEEC-----SSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEEC-
T ss_pred             CCceEEEEeCCCCeEEEEECCCCeEEEEEeC-----CCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEec-
Confidence            4455667778899999999999987776654     3456789999999999999999999999996  7777777765 


Q ss_pred             cccceeEEEEEC----CCCCEEEEeeC-CCeEEEEEccCCeeEEEEecce--------e-eeeeeEEEECCCCcEEEEee
Q 040370          107 HGTAEATSANFT----KDQRFVLSCGK-DSTVKLWEVSSGRLVKQYLGAT--------H-TQLRFQAVFNDTEEFVLSID  172 (228)
Q Consensus       107 ~~~~~i~~~~~~----~~~~~l~~~~~-d~~i~~wd~~~~~~~~~~~~~~--------~-~~~~~~~~~~~~~~~~~~~~  172 (228)
                        ......++|+    |+|++++++.. ++++.++|..+.+.+..+....        + ...+..+..++++..++...
T Consensus       239 --G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~  316 (567)
T 1qks_A          239 --GSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNV  316 (567)
T ss_dssp             --CSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEE
T ss_pred             --CCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEe
Confidence              3346789999    69998887765 5899999999998887765321        1 11345677778777666666


Q ss_pred             CCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEec-CCCCEEEeee
Q 040370          173 EPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCG-TDRSVRFWKE  226 (228)
Q Consensus       173 ~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~-~dg~i~vwd~  226 (228)
                      ..+|.|.++|....+.+.............+.|+|++++++++. .++.|.++|+
T Consensus       317 ~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~  371 (567)
T 1qks_A          317 KETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDT  371 (567)
T ss_dssp             TTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEET
T ss_pred             cCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEEC
Confidence            77899999998876543332223344577889999999876655 6788999986

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.75  E-value=2.8e-16  Score=112.02  Aligned_cols=197  Identities=8%  Similarity=0.064  Sum_probs=139.5

Q ss_pred             cceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCCCce
Q 040370           20 HNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANC   99 (228)
Q Consensus        20 ~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~   99 (228)
                      ..+.+++++++++.+++.. ++.|.+||........ ....  . ...+..++++|+++++++...++.|.+|+..+...
T Consensus        67 ~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~~-~~~~--~-~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~  141 (270)
T 1rwi_B           67 YQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQTV-LPFD--G-LNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQ  141 (270)
T ss_dssp             CSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCEE-CCCC--S-CSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSC
T ss_pred             CCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEee-eecC--C-cCCCcceEECCCCCEEEEECCCCEEEEEECCCcee
Confidence            5678899999998666665 8899999987654322 1111  1 35678999999999887777889999998655443


Q ss_pred             eeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCCeEE
Q 040370          100 VRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIV  179 (228)
Q Consensus       100 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~  179 (228)
                      ......  ....+.+++++++++.+++...++.|.+||............  .......+++.+++...+ +...++.|.
T Consensus       142 ~~~~~~--~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~--~~~~p~~i~~d~~g~l~v-~~~~~~~v~  216 (270)
T 1rwi_B          142 TVLPFT--GLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFT--DITAPWGIAVDEAGTVYV-TEHNTNQVV  216 (270)
T ss_dssp             EECCCC--SCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCS--SCCSEEEEEECTTCCEEE-EETTTSCEE
T ss_pred             Eeeccc--cCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeeccc--CCCCceEEEECCCCCEEE-EECCCCcEE
Confidence            322111  123567899999998777777788999999876554332221  224567788999885444 454468999


Q ss_pred             EEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370          180 IWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEI  227 (228)
Q Consensus       180 i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~  227 (228)
                      +||........ ....+...+.+++++|+|+++++...++.|+++++.
T Consensus       217 ~~~~~~~~~~~-~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~  263 (270)
T 1rwi_B          217 KLLAGSTTSTV-LPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSL  263 (270)
T ss_dssp             EECTTCSCCEE-CCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCC
T ss_pred             EEcCCCCccee-eccCCCCCceeEEECCCCCEEEEECCCCEEEEEcCC
Confidence            99986554333 222344678999999999988999999999999863

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.74  E-value=1.7e-14  Score=112.67  Aligned_cols=205  Identities=11%  Similarity=0.099  Sum_probs=146.2

Q ss_pred             EeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcc--cceEEeeeccceeeeccceeeEEeC----CCCCeEEEEec-CC
Q 040370           15 VIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVN--TFQCYLSANVPEISVNGAINQVRYS----STGGMYVTASK-DG   87 (228)
Q Consensus        15 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~--~~~~~~~~~~~~~~~~~~i~~~~~~----~~~~~l~~~~~-dg   87 (228)
                      .+.....+..+.|+|+++++++++.++.|.+||+.  +++.+.....     ......++|+    |+|+++++++. ++
T Consensus       192 ~i~~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~-----G~~P~~ia~s~~~~pDGk~l~v~n~~~~  266 (567)
T 1qks_A          192 VLDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKI-----GSEARSIETSKMEGWEDKYAIAGAYWPP  266 (567)
T ss_dssp             EEECSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEEC-----CSEEEEEEECCSTTCTTTEEEEEEEETT
T ss_pred             EEeCCCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEec-----CCCCceeEEccccCCCCCEEEEEEccCC
Confidence            33445567899999999999999999999999995  6666554443     3345789999    69998887665 59


Q ss_pred             eEEEEeCCCCceeeEEeccc---------ccceeEEEEECCCCCE-EEEeeCCCeEEEEEccCCeeEEEEecceeeeeee
Q 040370           88 AIRLWDGVSANCVRSIVGAH---------GTAEATSANFTKDQRF-VLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRF  157 (228)
Q Consensus        88 ~v~iwd~~~~~~~~~~~~~~---------~~~~i~~~~~~~~~~~-l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~  157 (228)
                      .|.++|..+.+.+..+....         ....+..+..++++.. ++....+|.|.++|....+.+..... .......
T Consensus       267 ~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i-~~~~~~~  345 (567)
T 1qks_A          267 QYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEI-SAERFLH  345 (567)
T ss_dssp             EEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEE-ECCSSEE
T ss_pred             eEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeee-ecccccc
Confidence            99999999999888776421         0225678888887654 55556679999999877543322211 1223445


Q ss_pred             EEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeec----CCCCCcEEEEeCCCC-cEEEEec-CCCCEEEeee
Q 040370          158 QAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSS----NHIGAPRWIEHSPAE-AAFITCG-TDRSVRFWKE  226 (228)
Q Consensus       158 ~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~----~~~~~v~~~~~~~~~-~~l~s~~-~dg~i~vwd~  226 (228)
                      ...|+|++++++++...++.|.++|..+++....+..    .|.+.-..+ ++|++ ..++++. .++.|.++|.
T Consensus       346 d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~  419 (567)
T 1qks_A          346 DGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGT  419 (567)
T ss_dssp             EEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEEC
T ss_pred             CceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecC
Confidence            6789999999998887789999999999987776644    243322222 57874 4445553 4688999985

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.74  E-value=4.9e-16  Score=115.18  Aligned_cols=177  Identities=7%  Similarity=0.045  Sum_probs=130.9

Q ss_pred             cceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEee-----ecc-ceeeeccceeeEEeCCCCCeEEEEecCCeEEEEe
Q 040370           20 HNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLS-----ANV-PEISVNGAINQVRYSSTGGMYVTASKDGAIRLWD   93 (228)
Q Consensus        20 ~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~-----~~~-~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd   93 (228)
                      .+++.+++++...++++|+.++ +.+|++++.+....     ... ....+.. |+.++|  +++.|+++ .++.|++||
T Consensus        38 ~~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~d  112 (388)
T 1xip_A           38 ASLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLD  112 (388)
T ss_dssp             SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEE
T ss_pred             ccccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEE
Confidence            3689999999999999999885 56799875441000     111 1112255 999999  88999998 889999999


Q ss_pred             CCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeC
Q 040370           94 GVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDE  173 (228)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (228)
                      +++.........+  ...+.++.+.+.  .+++++.||.+.+||+.+++...      ....+.+++|+|.|  ++++ .
T Consensus       113 v~sl~~~~~~~~~--~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~------~~~~Vs~v~WSpkG--~~vg-~  179 (388)
T 1xip_A          113 LEELSEFRTVTSF--EKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ------LAQNVTSFDVTNSQ--LAVL-L  179 (388)
T ss_dssp             SSSTTCEEEEEEC--SSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE------EEESEEEEEECSSE--EEEE-E
T ss_pred             chhhhccCcccee--ecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc------ccCCceEEEEcCCc--eEEE-E
Confidence            9887655555444  456777777654  38889999999999999876542      34578899999999  3443 3


Q ss_pred             CCCeEEEEEcCCcce--eEEee-----c---CCCCCcEEEEeCCCCcEEEE
Q 040370          174 PSNEIVIWDALTAEK--VAKWS-----S---NHIGAPRWIEHSPAEAAFIT  214 (228)
Q Consensus       174 ~d~~i~i~d~~~~~~--~~~~~-----~---~~~~~v~~~~~~~~~~~l~s  214 (228)
                      .||.+++|+...++.  ..++.     .   +|...|.++.|.+++.++++
T Consensus       180 ~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~  230 (388)
T 1xip_A          180 KDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV  230 (388)
T ss_dssp             TTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred             cCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence            479999998877664  34441     1   47788999999999998886

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.74  E-value=5.4e-15  Score=108.45  Aligned_cols=193  Identities=11%  Similarity=0.019  Sum_probs=138.8

Q ss_pred             ceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCCCcee
Q 040370           21 NVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANCV  100 (228)
Q Consensus        21 ~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~  100 (228)
                      ....+.+. +++.+++...++.|.++|..+++.+..+..     ......++++++++.+++...++.|.+||+.+++..
T Consensus        45 ~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~~-----~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~  118 (328)
T 3dsm_A           45 VAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRITG-----FTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEIT  118 (328)
T ss_dssp             CEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEEC-----CSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEE
T ss_pred             cceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcCC-----CCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEE
Confidence            45777774 455556666689999999999987766532     456788999888854444447899999999999888


Q ss_pred             eEEecccc---cceeEEEEECCCCCEEEEee--CCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCC-
Q 040370          101 RSIVGAHG---TAEATSANFTKDQRFVLSCG--KDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEP-  174 (228)
Q Consensus       101 ~~~~~~~~---~~~i~~~~~~~~~~~l~~~~--~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  174 (228)
                      ..+.....   ......+++  ++..++.+.  .++.|.++|+.+++....+...   .....+.++|+++.++++... 
T Consensus       119 ~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g---~~p~~i~~~~dG~l~v~~~~~~  193 (328)
T 3dsm_A          119 GYIECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDELTIG---IQPTSLVMDKYNKMWTITDGGY  193 (328)
T ss_dssp             EEEECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEEECS---SCBCCCEECTTSEEEEEBCCBC
T ss_pred             EEEEcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcC---CCccceEEcCCCCEEEEECCCc
Confidence            77765320   013445666  344455444  4889999999999888777542   234567889999876665442 


Q ss_pred             --------CCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeee
Q 040370          175 --------SNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKE  226 (228)
Q Consensus       175 --------d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~  226 (228)
                              .+.|.++|..+++....+.......+..++++|+++.|+.+..  .|.+||+
T Consensus       194 ~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~  251 (328)
T 3dsm_A          194 EGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPV  251 (328)
T ss_dssp             TTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEET
T ss_pred             cCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEEC
Confidence                    2789999999888776663333347899999999998887765  7888885

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.73  E-value=3.5e-16  Score=114.87  Aligned_cols=197  Identities=11%  Similarity=0.072  Sum_probs=137.9

Q ss_pred             CcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCCCc
Q 040370           19 THNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSAN   98 (228)
Q Consensus        19 ~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~   98 (228)
                      ...|.+++|+|++..++..+.++.++.|.   ++....+..   + ...+.+++|+|++++++++..++.|.+||..+++
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~---~-~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~   77 (333)
T 2dg1_A            5 QQDLPTLFYSGKSNSAVPIISESELQTIT---AEPWLEISK---K-GLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKE   77 (333)
T ss_dssp             -CCCCBCCSCGGGGCSSCCCCGGGSCEEE---CEEEEEEES---S-CCCEEEEEECTTSCEEEEETTTCEEEEECTTTCC
T ss_pred             ccccceeeecCCccceeEEeecccCcccc---cceeEEEec---c-CccccCcEECCCCCEEEEECCCCEEEEEeCCCCc
Confidence            34678889999888887777788889992   233222221   1 3456889999999988888889999999998877


Q ss_pred             eeeEEecccccceeEEEEECCCCCEEEEeeCC----CeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCC
Q 040370           99 CVRSIVGAHGTAEATSANFTKDQRFVLSCGKD----STVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEP  174 (228)
Q Consensus        99 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d----~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (228)
                      ........  ...+.+++++|+++++++...+    +.|.+||..+++....+........+..+.++|++..+++....
T Consensus        78 ~~~~~~~~--~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~  155 (333)
T 2dg1_A           78 IKRPFVSH--KANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRG  155 (333)
T ss_dssp             EEEEEECS--SSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCC
T ss_pred             EEEEeeCC--CCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccc
Confidence            65544332  4578999999999888777666    68999998876654333222233456788999999877765421


Q ss_pred             -----CCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEE-EEecCCCCEEEeee
Q 040370          175 -----SNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAF-ITCGTDRSVRFWKE  226 (228)
Q Consensus       175 -----d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~s~~~dg~i~vwd~  226 (228)
                           .+.|..+|..+++.....  .+...+..++|+|+++.| ++.+.++.|.+||+
T Consensus       156 ~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~  211 (333)
T 2dg1_A          156 YSTNPLGGVYYVSPDFRTVTPII--QNISVANGIALSTDEKVLWVTETTANRLHRIAL  211 (333)
T ss_dssp             BTTBCCEEEEEECTTSCCEEEEE--EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEE
T ss_pred             cccCCCceEEEEeCCCCEEEEee--cCCCcccceEECCCCCEEEEEeCCCCeEEEEEe
Confidence                 256777776554443322  233457889999999855 55556788999986

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.73  E-value=6.1e-15  Score=109.55  Aligned_cols=178  Identities=8%  Similarity=0.064  Sum_probs=118.1

Q ss_pred             cceEEEEEeCCCCEEEEecC--CCeEEEEEcccceEEee-eccceeeeccceeeEEeCCCC-CeEEEEe-----------
Q 040370           20 HNVRSVSFHPSGDFLLAGTD--HPIAHLYDVNTFQCYLS-ANVPEISVNGAINQVRYSSTG-GMYVTAS-----------   84 (228)
Q Consensus        20 ~~v~~~~~~~~~~~l~~~~~--d~~i~vw~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~-~~l~~~~-----------   84 (228)
                      .....++++|+|++|+++..  ++.|.+||+.+++.+.. ......      ..+.+.|++ ..+++.+           
T Consensus       108 ~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~------~~v~~~p~~~~~~~~~~~dg~~~~v~~~  181 (361)
T 2oiz_A          108 NYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAGC------WSVIPQPNRPRSFMTICGDGGLLTINLG  181 (361)
T ss_dssp             CCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTTE------EEEEECTTSSSEEEEEETTSSEEEEEEC
T ss_pred             CCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCCc------ceeEEcCCCCeeEEEECCCCcEEEEEEC
Confidence            45667999999999998864  58999999999887665 432111      112223322 2233333           


Q ss_pred             -------------------------------------cCCeEEEEeCCCCcee--eEEeccc--------ccceeEEEEE
Q 040370           85 -------------------------------------KDGAIRLWDGVSANCV--RSIVGAH--------GTAEATSANF  117 (228)
Q Consensus        85 -------------------------------------~dg~v~iwd~~~~~~~--~~~~~~~--------~~~~i~~~~~  117 (228)
                                                           .++.|.++|+......  ..+....        .......++|
T Consensus       182 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~  261 (361)
T 2oiz_A          182 EDGKVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGL  261 (361)
T ss_dssp             TTSSEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEE
T ss_pred             CCCcEeeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEE
Confidence                                                 3444555554332211  1111000        0000112688


Q ss_pred             CCCCCEEEEeeC-----------CCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCc
Q 040370          118 TKDQRFVLSCGK-----------DSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTA  186 (228)
Q Consensus       118 ~~~~~~l~~~~~-----------d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~  186 (228)
                      +|+++.++++..           .+.|.+||+.+++.+..+....    ...+.++|+++++++++.  +.|.+||..++
T Consensus       262 ~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~----p~~ia~spdg~~l~v~n~--~~v~v~D~~t~  335 (361)
T 2oiz_A          262 HRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD----ALSMTIDQQRNLMLTLDG--GNVNVYDISQP  335 (361)
T ss_dssp             ETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT----CCEEEEETTTTEEEEECS--SCEEEEECSSS
T ss_pred             ecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC----eeEEEECCCCCEEEEeCC--CeEEEEECCCC
Confidence            999888776643           3489999999999999887632    788999999999888764  99999999999


Q ss_pred             --ceeEEeecCCCCCcEEEEeCCCCc
Q 040370          187 --EKVAKWSSNHIGAPRWIEHSPAEA  210 (228)
Q Consensus       187 --~~~~~~~~~~~~~v~~~~~~~~~~  210 (228)
                        +.+..+ ..+......++++|+|+
T Consensus       336 ~l~~~~~i-~~~G~~P~~~~~~p~G~  360 (361)
T 2oiz_A          336 EPKLLRTI-EGAAEASLQVQFHPVGG  360 (361)
T ss_dssp             SCEEEEEE-TTSCSSEEEEEECCCSC
T ss_pred             cceeeEEe-ccCCCCcEEEEecCCCC
Confidence              888776 45667788999999885

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.73  E-value=9e-17  Score=120.51  Aligned_cols=191  Identities=9%  Similarity=-0.075  Sum_probs=129.4

Q ss_pred             EEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceee-------------------EEeCCCCCeEEEE-
Q 040370           24 SVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQ-------------------VRYSSTGGMYVTA-   83 (228)
Q Consensus        24 ~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~-------------------~~~~~~~~~l~~~-   83 (228)
                      .+.|+|++++|+.++.++.|++|++.+++........    ......                   +.|+|+++.++.+ 
T Consensus        85 ~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~----~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~  160 (396)
T 3c5m_A           85 GGFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVD----EEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAE  160 (396)
T ss_dssp             TCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECC----TTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHH
T ss_pred             cceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEecc----cccCCCCCEEEeccCCccccccccccccCCCCcceeeee
Confidence            3789999999999998899999999887754433321    111111                   3578888876654 


Q ss_pred             ----ecCCeEEEEeCCCCceeeEEecccccceeEEEEECC-CCCEEEEeeCC------CeEEEEEccCCeeEEEEeccee
Q 040370           84 ----SKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTK-DQRFVLSCGKD------STVKLWEVSSGRLVKQYLGATH  152 (228)
Q Consensus        84 ----~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d------~~i~~wd~~~~~~~~~~~~~~~  152 (228)
                          ..+..|.+||+.+++.......   ...+..+.|+| +++.|+..+.+      ..|.+||+..++... +.....
T Consensus       161 ~~~~~~~~~l~~~d~~~g~~~~~~~~---~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~-l~~~~~  236 (396)
T 3c5m_A          161 FYHTNPTCRLIKVDIETGELEVIHQD---TAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRK-IKEHAE  236 (396)
T ss_dssp             HHHTCCCEEEEEEETTTCCEEEEEEE---SSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEE-SSCCCT
T ss_pred             eccCCCcceEEEEECCCCcEEeeccC---CcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeE-eeccCC
Confidence                3567899999988876554432   55788999999 78877766543      468899987654332 222111


Q ss_pred             eeeeeEEEECCCCcEEEEeeCCC----CeEEEEEcCCcceeEEeecCCCCCcEEEEeCC-CCcEEEEec-----------
Q 040370          153 TQLRFQAVFNDTEEFVLSIDEPS----NEIVIWDALTAEKVAKWSSNHIGAPRWIEHSP-AEAAFITCG-----------  216 (228)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~d----~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~-----------  216 (228)
                      ...+..+.|+|++++++..+..+    +.|++||+.+++..... . .. ... +.|+| +++++++++           
T Consensus       237 ~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~-~-~~-~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~  312 (396)
T 3c5m_A          237 GESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVM-V-MP-PCS-HLMSNFDGSLMVGDGCDAPVDVADAD  312 (396)
T ss_dssp             TEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEE-E-CC-SEE-EEEECSSSSEEEEEECCC--------
T ss_pred             CccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEee-e-CC-CCC-CCccCCCCceEEEecCCcceeecccc
Confidence            33567789999999877654321    44999999887654432 1 11 123 88999 999888754           


Q ss_pred             -----CCCCEEEeee
Q 040370          217 -----TDRSVRFWKE  226 (228)
Q Consensus       217 -----~dg~i~vwd~  226 (228)
                           .++.|.+||+
T Consensus       313 ~~~~~~~~~i~~~d~  327 (396)
T 3c5m_A          313 SYNIENDPFLYVLNT  327 (396)
T ss_dssp             --CCCCCCEEEEEET
T ss_pred             ccccCCCCcEEEEec
Confidence                 3467888885

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.72  E-value=6e-15  Score=105.08  Aligned_cols=195  Identities=12%  Similarity=0.032  Sum_probs=134.6

Q ss_pred             ceEEEEEeCCCCEEE-EecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCCCce
Q 040370           21 NVRSVSFHPSGDFLL-AGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANC   99 (228)
Q Consensus        21 ~v~~~~~~~~~~~l~-~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~   99 (228)
                      ...+++++|+++.++ +...++.|.+|+..+....... .  .. ...+.+++++++++++++.. ++.|.+||......
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~-~--~~-~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~   99 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLP-F--NG-LYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQ   99 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECC-C--CS-CCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCC
T ss_pred             CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEe-e--CC-cCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceE
Confidence            788999999998777 5477889999987665432211 1  11 34678999999998666665 88999999875543


Q ss_pred             eeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCCeEE
Q 040370          100 VRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIV  179 (228)
Q Consensus       100 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~  179 (228)
                       ..+... ....+..++++++++.+++...++.|.+||..+.......  .........+++++++...++ ...++.|.
T Consensus       100 -~~~~~~-~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~--~~~~~~p~~i~~~~~g~l~v~-~~~~~~i~  174 (270)
T 1rwi_B          100 -TVLPFD-GLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLP--FTGLNDPDGVAVDNSGNVYVT-DTDNNRVV  174 (270)
T ss_dssp             -EECCCC-SCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECC--CCSCCSCCCEEECTTCCEEEE-EGGGTEEE
T ss_pred             -eeeecC-CcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeec--cccCCCceeEEEeCCCCEEEE-ECCCCEEE
Confidence             223221 1356789999999997777777889999986554332221  112234567888998875555 44368999


Q ss_pred             EEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeee
Q 040370          180 IWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKE  226 (228)
Q Consensus       180 i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~  226 (228)
                      +||.......... ..+...+..++++++|.++++...++.|.+|+.
T Consensus       175 ~~~~~~~~~~~~~-~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~  220 (270)
T 1rwi_B          175 KLEAESNNQVVLP-FTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLA  220 (270)
T ss_dssp             EECTTTCCEEECC-CSSCCSEEEEEECTTCCEEEEETTTSCEEEECT
T ss_pred             EEecCCCceEeec-ccCCCCceEEEECCCCCEEEEECCCCcEEEEcC
Confidence            9998766544332 334467899999999988888878889999975

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.71  E-value=2e-14  Score=102.74  Aligned_cols=195  Identities=12%  Similarity=0.097  Sum_probs=145.7

Q ss_pred             cceeEEEeecC-cceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEec-C
Q 040370            9 AKRAFRVIQDT-HNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASK-D   86 (228)
Q Consensus         9 ~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d   86 (228)
                      .+...++..+. ..+.+++++|+|+++++  .++.|..||. +++.+..+....   ...+.++.+.|+|+.+++.+. +
T Consensus        25 G~~~w~~~~~~~~~~~~~~~~pdG~ilvs--~~~~V~~~d~-~G~~~W~~~~~~---~~~~~~~~~~~dG~~lv~~~~~~   98 (276)
T 3no2_A           25 KEIVWEYPLEKGWECNSVAATKAGEILFS--YSKGAKMITR-DGRELWNIAAPA---GCEMQTARILPDGNALVAWCGHP   98 (276)
T ss_dssp             TEEEEEEECCTTCCCCEEEECTTSCEEEE--CBSEEEEECT-TSCEEEEEECCT---TCEEEEEEECTTSCEEEEEESTT
T ss_pred             CeEEEEeCCCccCCCcCeEECCCCCEEEe--CCCCEEEECC-CCCEEEEEcCCC---CccccccEECCCCCEEEEecCCC
Confidence            34445554444 47899999999998883  4678999999 788777766531   246788999999999998887 7


Q ss_pred             CeEEEEeCCCCceeeEEeccc----ccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEEC
Q 040370           87 GAIRLWDGVSANCVRSIVGAH----GTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFN  162 (228)
Q Consensus        87 g~v~iwd~~~~~~~~~~~~~~----~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~  162 (228)
                      +.+..+|. +++.+..+....    .......+.+.++++++++...++.|..||.. ++.+.++...   .....+...
T Consensus        99 ~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~---~~~~~~~~~  173 (276)
T 3no2_A           99 STILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLLNSVKLS---GTPFSSAFL  173 (276)
T ss_dssp             EEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECS---SCCCEEEEC
T ss_pred             CEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEEEEEECC---CCccceeEc
Confidence            88888885 677776665321    11234456788999999999999999999987 9998888753   234456677


Q ss_pred             CCCcEEEEeeCCCCeEEEEEcCCcceeEEeecC-----CCCCcEEEEeCCCCcEEEEe
Q 040370          163 DTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSN-----HIGAPRWIEHSPAEAAFITC  215 (228)
Q Consensus       163 ~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~s~  215 (228)
                      +++..+++... ++.|..+|..+++.+.++...     ....+..+...++|..+++.
T Consensus       174 ~~g~~~v~~~~-~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~  230 (276)
T 3no2_A          174 DNGDCLVACGD-AHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICN  230 (276)
T ss_dssp             TTSCEEEECBT-TSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEE
T ss_pred             CCCCEEEEeCC-CCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEe
Confidence            88888877655 578999999999998887421     12237788888999988887

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.71  E-value=7.1e-15  Score=118.93  Aligned_cols=197  Identities=10%  Similarity=0.075  Sum_probs=134.0

Q ss_pred             cceEEEEEeCCCCEEEEecCC-----CeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCe------
Q 040370           20 HNVRSVSFHPSGDFLLAGTDH-----PIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGA------   88 (228)
Q Consensus        20 ~~v~~~~~~~~~~~l~~~~~d-----~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~------   88 (228)
                      ..+..++|||||++||.+..+     ..|++||+.+++..... .   + ...+..++|+|+ +.|+.++.++.      
T Consensus       163 ~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~-~---~-~~~~~~~~wspD-~~l~~~~~~~~~~~~~~  236 (741)
T 1yr2_A          163 TALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADE-L---K-WVKFSGLAWLGN-DALLYSRFAEPKEGQAF  236 (741)
T ss_dssp             EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEE-E---E-EEESCCCEESTT-SEEEEEECCCC------
T ss_pred             EEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCcc-C---C-CceeccEEEECC-CEEEEEEecCccccccc
Confidence            468899999999999876543     46999999998864421 1   1 223467899999 98888876654      


Q ss_pred             --------EEEEeCCCCcee--eEEecccccceeEEEEECCCCCEEEEeeCCC-----eEEEEEccCC--eeEEEEecce
Q 040370           89 --------IRLWDGVSANCV--RSIVGAHGTAEATSANFTKDQRFVLSCGKDS-----TVKLWEVSSG--RLVKQYLGAT  151 (228)
Q Consensus        89 --------v~iwd~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~-----~i~~wd~~~~--~~~~~~~~~~  151 (228)
                              |++|++.++...  ..+....+...+..+.|+|||++|+..+.++     .|++||+.++  +....+... 
T Consensus       237 ~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~-  315 (741)
T 1yr2_A          237 QALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPD-  315 (741)
T ss_dssp             --CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECS-
T ss_pred             ccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCC-
Confidence                    899998876532  2222222223578899999999988777544     8999999876  313444332 


Q ss_pred             eeeeeeEEEECCCCcEEEEeeCC---CCeEEEEEcCCc-ceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeee
Q 040370          152 HTQLRFQAVFNDTEEFVLSIDEP---SNEIVIWDALTA-EKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKE  226 (228)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~---d~~i~i~d~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~  226 (228)
                       ........ .|++..++.....   ++.|.+||+.++ .....+...+...+..+.++ ++.++++...|+..+||.+
T Consensus       316 -~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~  391 (741)
T 1yr2_A          316 -LKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQVLAF  391 (741)
T ss_dssp             -SSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEE
T ss_pred             -CCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEE
Confidence             12222332 3777777665542   456999998875 24444434555567778887 6678888889998888864

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.71  E-value=4.2e-15  Score=119.73  Aligned_cols=199  Identities=8%  Similarity=-0.010  Sum_probs=131.8

Q ss_pred             ceEEEEEeCCCCEEEEecCCCe----------------EEEEEcccceEE--eeeccceeeeccceeeEEeCCCCCeEEE
Q 040370           21 NVRSVSFHPSGDFLLAGTDHPI----------------AHLYDVNTFQCY--LSANVPEISVNGAINQVRYSSTGGMYVT   82 (228)
Q Consensus        21 ~v~~~~~~~~~~~l~~~~~d~~----------------i~vw~~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~l~~   82 (228)
                      .+..++|+|||+.|+.++.++.                |++|++.+++..  ......  .+...+..+.|+|+|++|+.
T Consensus       172 ~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~--~~~~~~~~~~~SpDg~~l~~  249 (710)
T 2xdw_A          172 KFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFP--DEPKWMGGAELSDDGRYVLL  249 (710)
T ss_dssp             CSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCT--TCTTCEEEEEECTTSCEEEE
T ss_pred             ccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccC--CCCeEEEEEEEcCCCCEEEE
Confidence            3678999999999998887665                999999876521  111111  11345678999999999887


Q ss_pred             Eec-----CCeEEEEeCCC------Cc-eeeEEecccccceeEEEEECCCCCEEEEeeCC----CeEEEEEccCCee--E
Q 040370           83 ASK-----DGAIRLWDGVS------AN-CVRSIVGAHGTAEATSANFTKDQRFVLSCGKD----STVKLWEVSSGRL--V  144 (228)
Q Consensus        83 ~~~-----dg~v~iwd~~~------~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d----~~i~~wd~~~~~~--~  144 (228)
                      ++.     +..|.+||+.+      +. ....+..+.  ..+.. .|+|+++.|+..+..    +.|.+||+.++..  .
T Consensus       250 ~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~--~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~  326 (710)
T 2xdw_A          250 SIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNF--EGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKW  326 (710)
T ss_dssp             EEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSS--SSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGC
T ss_pred             EEEccCCCccEEEEEECcccccccCCccceEEeeCCC--CcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccc
Confidence            765     56899999986      43 355555442  23333 478888877766543    3699999987642  2


Q ss_pred             EEEecceeeeeeeEEEECCCCcEEEEeeCCCC--eEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEe-c---CC
Q 040370          145 KQYLGATHTQLRFQAVFNDTEEFVLSIDEPSN--EIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITC-G---TD  218 (228)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~--~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~---~d  218 (228)
                      ..+..+.....+..+.+.+++..+++. ..|+  .|.+||+.+++....+ ..+.+.+..+.++|++..++.. +   ..
T Consensus       327 ~~l~~~~~~~~~~~~~~~~~~~lv~~~-~~~g~~~l~~~~~~~g~~~~~l-~~~~~~v~~~~~s~d~~~l~~~~ss~~~P  404 (710)
T 2xdw_A          327 KVLVPEHEKDVLEWVACVRSNFLVLCY-LHDVKNTLQLHDLATGALLKIF-PLEVGSVVGYSGQKKDTEIFYQFTSFLSP  404 (710)
T ss_dssp             EEEECCCSSCEEEEEEEETTTEEEEEE-EETTEEEEEEEETTTCCEEEEE-CCCSSEEEEEECCTTCSEEEEEEECSSCC
T ss_pred             eeccCCCCCCeEEEEEEEcCCEEEEEE-EECCEEEEEEEECCCCCEEEec-CCCCceEEEEecCCCCCEEEEEEeCCCCC
Confidence            344332222355667777665555554 4466  4666787677766666 4567788899999988765532 2   34


Q ss_pred             CCEEEeee
Q 040370          219 RSVRFWKE  226 (228)
Q Consensus       219 g~i~vwd~  226 (228)
                      +.+..||+
T Consensus       405 ~~i~~~d~  412 (710)
T 2xdw_A          405 GIIYHCDL  412 (710)
T ss_dssp             CEEEEEET
T ss_pred             CEEEEEEC
Confidence            67888875

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.71  E-value=6.2e-15  Score=108.75  Aligned_cols=187  Identities=7%  Similarity=0.036  Sum_probs=121.6

Q ss_pred             EEeecCcceEEEEEeCCCCEEEEecC---------------------------CCeEEEEEcccceEEeeeccceeeecc
Q 040370           14 RVIQDTHNVRSVSFHPSGDFLLAGTD---------------------------HPIAHLYDVNTFQCYLSANVPEISVNG   66 (228)
Q Consensus        14 ~~~~~~~~v~~~~~~~~~~~l~~~~~---------------------------d~~i~vw~~~~~~~~~~~~~~~~~~~~   66 (228)
                      .+..+.. +..++|+|+++.|+.++.                           ...|.+||+.+++....+..     . 
T Consensus        99 ~l~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-----~-  171 (347)
T 2gop_A           99 KILEAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-----P-  171 (347)
T ss_dssp             EEEEESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE-----E-
T ss_pred             EEEcCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC-----C-
Confidence            3334444 999999999999987763                           25789999988876333321     2 


Q ss_pred             ceeeEEeCCCCCeEEEEecCC-------eEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCC--------C
Q 040370           67 AINQVRYSSTGGMYVTASKDG-------AIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKD--------S  131 (228)
Q Consensus        67 ~i~~~~~~~~~~~l~~~~~dg-------~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d--------~  131 (228)
                      .+..+.|+|+| +++++..++       ...+|.+.+++ ...+..+   ..+..+  +|+|++|+.++.+        .
T Consensus       172 ~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~-~~~l~~~---~~~~~~--spdg~~l~~~~~~~~~~~~~~~  244 (347)
T 2gop_A          172 RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGK-EEKMFEK---VSFYAV--DSDGERILLYGKPEKKYMSEHN  244 (347)
T ss_dssp             TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTE-EEEEEEE---ESEEEE--EECSSCEEEEECCSSSCCCSSC
T ss_pred             CcccccCCCCe-EEEEEecccccccccccccEEEeCCCc-eEEeccC---cceeeE--CCCCCEEEEEEccccCCccccc
Confidence            67889999999 777776542       34555444444 3333332   233443  8999988877644        3


Q ss_pred             eEEEEEccCCeeEEEEecceeeeeeeE-EEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCc
Q 040370          132 TVKLWEVSSGRLVKQYLGATHTQLRFQ-AVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEA  210 (228)
Q Consensus       132 ~i~~wd~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~  210 (228)
                      .|.+||  +++.......  +...+.. +.|+ ++ .+++ +..++.+++| +.+++.. .+ ..+...|.+++|+|  .
T Consensus       245 ~l~~~d--~~~~~~l~~~--~~~~~~~~~~~s-dg-~~~~-~~~~~~~~l~-~~~g~~~-~~-~~~~~~v~~~~~s~--~  312 (347)
T 2gop_A          245 KLYIYD--GKEVMGILDE--VDRGVGQAKIKD-GK-VYFT-LFEEGSVNLY-IWDGEIK-PI-AKGRHWIMGFDVDE--I  312 (347)
T ss_dssp             EEEEEC--SSCEEESSTT--CCSEEEEEEEET-TE-EEEE-EEETTEEEEE-EESSSEE-EE-ECSSSEEEEEEESS--S
T ss_pred             eEEEEC--CCceEecccc--CCcccCCccEEc-Cc-EEEE-EecCCcEEEE-EcCCceE-EE-ecCCCeEEeeeeeC--c
Confidence            688888  5544332222  3344554 7888 76 4444 4557999999 8765543 33 24577899999999  6


Q ss_pred             EEEEecCCCCE-EEeee
Q 040370          211 AFITCGTDRSV-RFWKE  226 (228)
Q Consensus       211 ~l~s~~~dg~i-~vwd~  226 (228)
                      ++++++.++.. .+|.+
T Consensus       313 ~~~~~~~~~~~~~l~~~  329 (347)
T 2gop_A          313 VVYLKETATRLRELFTW  329 (347)
T ss_dssp             EEEEEECSSSCCEEEEE
T ss_pred             EEEEEcCCCChHHheEe
Confidence            77777777665 77764

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.71  E-value=1.5e-13  Score=99.84  Aligned_cols=201  Identities=8%  Similarity=0.053  Sum_probs=134.4

Q ss_pred             cCcceEEEEEeCC-CCEEEEecCCCeEEEEEcccceEEee-eccceeeeccceeeEEeCCCCCeEEEEecC---------
Q 040370           18 DTHNVRSVSFHPS-GDFLLAGTDHPIAHLYDVNTFQCYLS-ANVPEISVNGAINQVRYSSTGGMYVTASKD---------   86 (228)
Q Consensus        18 ~~~~v~~~~~~~~-~~~l~~~~~d~~i~vw~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---------   86 (228)
                      +...+.+++++++ ++++++.. .+.|.+||.+ ++.... ...........+.+++++|+|+++++...+         
T Consensus        69 ~~~~~~~i~~~~~~g~l~v~~~-~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~  146 (314)
T 1pjx_A           69 YGGIPAGCQCDRDANQLFVADM-RLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTR  146 (314)
T ss_dssp             EECCEEEEEECSSSSEEEEEET-TTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCB
T ss_pred             CCCCCceEEEecCCCcEEEEEC-CCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccc
Confidence            4467899999998 66555544 4478899988 665433 221111113458899999999887777655         


Q ss_pred             ------CeEEEEeCCCCceeeEEecccccceeEEEEEC----CCCCEEEEe-eCCCeEEEEEcc-CCeeEE--EEec-ce
Q 040370           87 ------GAIRLWDGVSANCVRSIVGAHGTAEATSANFT----KDQRFVLSC-GKDSTVKLWEVS-SGRLVK--QYLG-AT  151 (228)
Q Consensus        87 ------g~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~----~~~~~l~~~-~~d~~i~~wd~~-~~~~~~--~~~~-~~  151 (228)
                            +.|..+|.. ++.......   ......++++    |+++.++.+ ..++.|.+||+. +++...  .+.. ..
T Consensus       147 ~~~~~~~~l~~~~~~-g~~~~~~~~---~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~  222 (314)
T 1pjx_A          147 SMQEKFGSIYCFTTD-GQMIQVDTA---FQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPG  222 (314)
T ss_dssp             TTSSSCEEEEEECTT-SCEEEEEEE---ESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCC
T ss_pred             cccCCCCeEEEECCC-CCEEEeccC---CCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCC
Confidence                  578888865 544333222   3345788999    998765554 567899999986 444211  1111 11


Q ss_pred             ee-eeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCc-EEEEecCCCCEEEeee
Q 040370          152 HT-QLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEA-AFITCGTDRSVRFWKE  226 (228)
Q Consensus       152 ~~-~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~dg~i~vwd~  226 (228)
                      +. .....+++++++...++... ++.|.+||..+++....+ ..+...+.+++++|+++ ++++...++.|..|++
T Consensus       223 ~~~~~p~~i~~d~~G~l~v~~~~-~~~i~~~d~~~g~~~~~~-~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~  297 (314)
T 1pjx_A          223 THEGGADGMDFDEDNNLLVANWG-SSHIEVFGPDGGQPKMRI-RCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEW  297 (314)
T ss_dssp             CSSCEEEEEEEBTTCCEEEEEET-TTEEEEECTTCBSCSEEE-ECSSSCEEEEEECTTSSEEEEEETTTTEEEEEEC
T ss_pred             CCCCCCCceEECCCCCEEEEEcC-CCEEEEEcCCCCcEeEEE-eCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeC
Confidence            11 34567888999877766544 589999998877766655 34557889999999998 4555566788888875

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.69  E-value=2.6e-13  Score=97.81  Aligned_cols=199  Identities=9%  Similarity=0.026  Sum_probs=141.0

Q ss_pred             cCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCCC
Q 040370           18 DTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSA   97 (228)
Q Consensus        18 ~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~   97 (228)
                      +...+.++++++++..+++...++.|..|+.+ ++. .....+. . ...+..+++.|+++++++...++.|..||. ++
T Consensus        55 ~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~-~~~~~~~-~-~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g  129 (299)
T 2z2n_A           55 PDAKVMCLTISSDGEVWFTENAANKIGRITKK-GII-KEYTLPN-P-DSAPYGITEGPNGDIWFTEMNGNRIGRITD-DG  129 (299)
T ss_dssp             TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE-EEEECSS-T-TCCEEEEEECTTSCEEEEETTTTEEEEECT-TC
T ss_pred             ccCceeeEEECCCCCEEEeCCCCCeEEEECCC-CcE-EEEeCCC-c-CCCceeeEECCCCCEEEEecCCceEEEECC-CC
Confidence            45678999999999988887778899999976 332 2222110 1 456889999999988888777889999998 55


Q ss_pred             ceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCCe
Q 040370           98 NCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNE  177 (228)
Q Consensus        98 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  177 (228)
                      +... +........+..+++.++++..++...++.|..||. +++... +...........+.+.+++...++.. .++.
T Consensus       130 ~~~~-~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~-~~~~~~~~~~~~i~~~~~g~l~v~~~-~~~~  205 (299)
T 2z2n_A          130 KIRE-YELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITE-FKIPTPASGPVGITKGNDDALWFVEI-IGNK  205 (299)
T ss_dssp             CEEE-EECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEE-EECSSTTCCEEEEEECTTSSEEEEET-TTTE
T ss_pred             CEEE-ecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEE-eeCCCCCCcceeEEECCCCCEEEEcc-CCce
Confidence            4432 222222456789999999988777777789999998 665443 22222234456788899888655543 3689


Q ss_pred             EEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeee
Q 040370          178 IVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKE  226 (228)
Q Consensus       178 i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~  226 (228)
                      |.+||. +++........+...+.+++++++++++++...++.|..||.
T Consensus       206 i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~  253 (299)
T 2z2n_A          206 IGRITT-SGEITEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTS  253 (299)
T ss_dssp             EEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEET
T ss_pred             EEEECC-CCcEEEEECCCCCCCceeEEECCCCCEEEeccCCceEEEECC
Confidence            999998 666443222345567899999999997777767788888874

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.69  E-value=2.3e-13  Score=98.06  Aligned_cols=200  Identities=7%  Similarity=0.044  Sum_probs=142.2

Q ss_pred             ecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCC
Q 040370           17 QDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVS   96 (228)
Q Consensus        17 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~   96 (228)
                      .+...+.++++.++++.+++...++.|.+||.. ++..... ... . ...+.++++.++++++++...++.|..||.. 
T Consensus        12 ~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~-~~~-~-~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-   86 (299)
T 2z2n_A           12 NQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYP-LPT-P-DAKVMCLTISSDGEVWFTENAANKIGRITKK-   86 (299)
T ss_dssp             SSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEE-CSS-T-TCCEEEEEECTTSCEEEEETTTTEEEEECTT-
T ss_pred             CcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEec-CCc-c-cCceeeEEECCCCCEEEeCCCCCeEEEECCC-
Confidence            455789999999999988877768899999988 5533221 111 1 4568899999999988887778899999976 


Q ss_pred             CceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCC
Q 040370           97 ANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSN  176 (228)
Q Consensus        97 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  176 (228)
                      ++ ...+........+..+++.+++.++++...++.|..||. +++... +...........+.+.+++...++. ..++
T Consensus        87 g~-~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~-~~~~~~~~~~~~i~~~~~g~l~v~~-~~~~  162 (299)
T 2z2n_A           87 GI-IKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIRE-YELPNKGSYPSFITLGSDNALWFTE-NQNN  162 (299)
T ss_dssp             SC-EEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEE-EECSSTTCCEEEEEECTTSCEEEEE-TTTT
T ss_pred             Cc-EEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEE-ecCCCCCCCCceEEEcCCCCEEEEe-CCCC
Confidence            33 233332212456889999999988887777889999998 554432 2222123456778888888766654 3358


Q ss_pred             eEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeee
Q 040370          177 EIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKE  226 (228)
Q Consensus       177 ~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~  226 (228)
                      .|..||. +++............+..+++++++.++++...++.|.+||.
T Consensus       163 ~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~  211 (299)
T 2z2n_A          163 AIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT  211 (299)
T ss_dssp             EEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT
T ss_pred             EEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC
Confidence            9999998 665544322334567889999999998887777888888874

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.67  E-value=1.6e-13  Score=99.78  Aligned_cols=204  Identities=8%  Similarity=0.110  Sum_probs=136.8

Q ss_pred             eecCcceEEEEEeCCCCEEEE-------ecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCC-CCeEEEEecCC
Q 040370           16 IQDTHNVRSVSFHPSGDFLLA-------GTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSST-GGMYVTASKDG   87 (228)
Q Consensus        16 ~~~~~~v~~~~~~~~~~~l~~-------~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg   87 (228)
                      ...-....+++|++++..+++       +..++.|.+||..+++...........+...+.+++++++ ++++++.. .+
T Consensus        14 ~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~-~~   92 (314)
T 1pjx_A           14 TEDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADM-RL   92 (314)
T ss_dssp             ECCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEET-TT
T ss_pred             hccCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEEC-CC
Confidence            344556789999999988877       5778899999988776543221000001456889999999 76555444 45


Q ss_pred             eEEEEeCCCCceeeE-Eecc--cccceeEEEEECCCCCEEEEeeCC---------------CeEEEEEccCCeeEEEEec
Q 040370           88 AIRLWDGVSANCVRS-IVGA--HGTAEATSANFTKDQRFVLSCGKD---------------STVKLWEVSSGRLVKQYLG  149 (228)
Q Consensus        88 ~v~iwd~~~~~~~~~-~~~~--~~~~~i~~~~~~~~~~~l~~~~~d---------------~~i~~wd~~~~~~~~~~~~  149 (228)
                      .|.+||.. ++.... ....  .....+.+++++++++++++...+               +.|..||.. ++...... 
T Consensus        93 ~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~-  169 (314)
T 1pjx_A           93 GLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDT-  169 (314)
T ss_dssp             EEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEE-
T ss_pred             CEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEecc-
Confidence            79999987 654322 2111  112457899999999887776655               567777765 44333222 


Q ss_pred             ceeeeeeeEEEEC----CCCcEEEEeeCCCCeEEEEEcC-Ccce-----eEEeecCCC-CCcEEEEeCCCCcEEEEecCC
Q 040370          150 ATHTQLRFQAVFN----DTEEFVLSIDEPSNEIVIWDAL-TAEK-----VAKWSSNHI-GAPRWIEHSPAEAAFITCGTD  218 (228)
Q Consensus       150 ~~~~~~~~~~~~~----~~~~~~~~~~~~d~~i~i~d~~-~~~~-----~~~~~~~~~-~~v~~~~~~~~~~~l~s~~~d  218 (228)
                        .......++++    ++++.++++...++.|.+||.. +++.     ...+ ..+. ..+..++++++|+++++...+
T Consensus       170 --~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~-~~~~~~~p~~i~~d~~G~l~v~~~~~  246 (314)
T 1pjx_A          170 --AFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHI-PGTHEGGADGMDFDEDNNLLVANWGS  246 (314)
T ss_dssp             --EESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEEC-CCCSSCEEEEEEEBTTCCEEEEEETT
T ss_pred             --CCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEEC-CCCCCCCCCceEECCCCCEEEEEcCC
Confidence              22334567788    9988777776667999999976 3432     1222 2333 568889999999988888788


Q ss_pred             CCEEEeee
Q 040370          219 RSVRFWKE  226 (228)
Q Consensus       219 g~i~vwd~  226 (228)
                      +.|.+||.
T Consensus       247 ~~i~~~d~  254 (314)
T 1pjx_A          247 SHIEVFGP  254 (314)
T ss_dssp             TEEEEECT
T ss_pred             CEEEEEcC
Confidence            89999985

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.66  E-value=1.8e-13  Score=103.23  Aligned_cols=196  Identities=8%  Similarity=0.032  Sum_probs=137.6

Q ss_pred             cceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCC--eEEEEeCCCC
Q 040370           20 HNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDG--AIRLWDGVSA   97 (228)
Q Consensus        20 ~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg--~v~iwd~~~~   97 (228)
                      .....++|+|+++++++...++.|++||.+++........     ..... ++|+|+++.|+++..++  .|.+++...+
T Consensus       131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~-----~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~  204 (409)
T 3hrp_A          131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPG-----FKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASG  204 (409)
T ss_dssp             CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEET-----CCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGT
T ss_pred             CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeecc-----CCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCC
Confidence            4678999999999888888889999999988776544332     12233 89999999988888766  7999998766


Q ss_pred             ceeeEEe--cccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEe---cceeeeee-e-EEEECCCCcEEEE
Q 040370           98 NCVRSIV--GAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYL---GATHTQLR-F-QAVFNDTEEFVLS  170 (228)
Q Consensus        98 ~~~~~~~--~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~---~~~~~~~~-~-~~~~~~~~~~~~~  170 (228)
                      .....+.  .......+.+++++|++..|+.+..++.|+.||..++... .+.   ........ . .++++|++..+++
T Consensus       205 ~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~-~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv  283 (409)
T 3hrp_A          205 WAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVT-LIKQLELSGSLGTNPGPYLIYYFVDSNFYM  283 (409)
T ss_dssp             TCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEE-EEEECCCCSCCCCSSCCEEEEETTTTEEEE
T ss_pred             ceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEE-EEecccccCCCCCCccccEEEeCCCCEEEE
Confidence            5443331  0111456688999995555666777889999999876532 221   11011112 3 8899997677777


Q ss_pred             eeCCCCeEEEEEcCCcceeEEeecCC---------------CCCcEEEEeCCCCcEEEEec-CCCCEEEee
Q 040370          171 IDEPSNEIVIWDALTAEKVAKWSSNH---------------IGAPRWIEHSPAEAAFITCG-TDRSVRFWK  225 (228)
Q Consensus       171 ~~~~d~~i~i~d~~~~~~~~~~~~~~---------------~~~v~~~~~~~~~~~l~s~~-~dg~i~vwd  225 (228)
                      +...++.|+.|+....  ...+ .++               ......++++|+|+++++-. .+++|+.|+
T Consensus       284 ~d~~~~~I~~~~~~g~--~~~~-~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~  351 (409)
T 3hrp_A          284 SDQNLSSVYKITPDGE--CEWF-CGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLD  351 (409)
T ss_dssp             EETTTTEEEEECTTCC--EEEE-EECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEE
T ss_pred             EeCCCCEEEEEecCCC--EEEE-EeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEE
Confidence            7777899999997543  2222 122               23578999999999888887 889999998

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.65  E-value=8.6e-13  Score=95.40  Aligned_cols=192  Identities=9%  Similarity=0.112  Sum_probs=124.3

Q ss_pred             eecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEec----------
Q 040370           16 IQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASK----------   85 (228)
Q Consensus        16 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----------   85 (228)
                      ......+.+++++|+++++++ . ++.|.+||.++++...............++.++++|+|+++++...          
T Consensus        50 ~~~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~  127 (297)
T 3g4e_A           50 VTMDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLER  127 (297)
T ss_dssp             EECSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCT
T ss_pred             EeCCCceEEEEECCCCCEEEE-E-CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccC
Confidence            345678999999999995554 4 4679999998876543322211111345789999999996665432          


Q ss_pred             -CCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEE-EeeCCCeEEEEEc--cCCeeE--EEEe-cceeeeeeeE
Q 040370           86 -DGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVL-SCGKDSTVKLWEV--SSGRLV--KQYL-GATHTQLRFQ  158 (228)
Q Consensus        86 -dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~d~~i~~wd~--~~~~~~--~~~~-~~~~~~~~~~  158 (228)
                       .+.|..++.. ++... +...  ......++|+|+++.|+ +.+.++.|.+||+  .++...  ..+. ..........
T Consensus       128 ~~~~l~~~d~~-g~~~~-~~~~--~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g  203 (297)
T 3g4e_A          128 HQGALYSLFPD-HHVKK-YFDQ--VDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDG  203 (297)
T ss_dssp             TCEEEEEECTT-SCEEE-EEEE--ESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEE
T ss_pred             CCcEEEEEECC-CCEEE-Eeec--cccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCe
Confidence             1344444432 33322 2221  33567899999998665 5556789999997  455432  1111 1112234567


Q ss_pred             EEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeC-CCCcEEEEe
Q 040370          159 AVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHS-PAEAAFITC  215 (228)
Q Consensus       159 ~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~s~  215 (228)
                      +++.+++...++... ++.|..||..+++.+..+ ..+...+++++|. |+++.|+.+
T Consensus       204 ~~~d~~G~lwva~~~-~~~v~~~d~~tG~~~~~i-~~p~~~~t~~~f~g~d~~~L~vt  259 (297)
T 3g4e_A          204 MCIDAEGKLWVACYN-GGRVIRLDPVTGKRLQTV-KLPVDKTTSCCFGGKNYSEMYVT  259 (297)
T ss_dssp             EEEBTTSCEEEEEET-TTEEEEECTTTCCEEEEE-ECSSSBEEEEEEESGGGCEEEEE
T ss_pred             eEECCCCCEEEEEcC-CCEEEEEcCCCceEEEEE-ECCCCCceEEEEeCCCCCEEEEE
Confidence            888999976665544 588999999889888777 4455679999998 777655433

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.65  E-value=1e-12  Score=97.81  Aligned_cols=198  Identities=8%  Similarity=-0.021  Sum_probs=126.0

Q ss_pred             EEEEeCCCCEEEEec----------CCCeEEEEEcccceEEeeeccc-eee--eccceeeEEeCCCCCeEEEEec--CCe
Q 040370           24 SVSFHPSGDFLLAGT----------DHPIAHLYDVNTFQCYLSANVP-EIS--VNGAINQVRYSSTGGMYVTASK--DGA   88 (228)
Q Consensus        24 ~~~~~~~~~~l~~~~----------~d~~i~vw~~~~~~~~~~~~~~-~~~--~~~~i~~~~~~~~~~~l~~~~~--dg~   88 (228)
                      .++++||+++++++.          .++.|.++|..+.+........ ...  .......+.|+|+|++|+++..  ++.
T Consensus        70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~  149 (373)
T 2mad_H           70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPA  149 (373)
T ss_pred             CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCe
Confidence            999999999999875          3678999999988776655432 100  0123457999999999998874  578


Q ss_pred             EEEEeCCCCceeeE-EecccccceeEE--------E-------------------------------------EECCCCC
Q 040370           89 IRLWDGVSANCVRS-IVGAHGTAEATS--------A-------------------------------------NFTKDQR  122 (228)
Q Consensus        89 v~iwd~~~~~~~~~-~~~~~~~~~i~~--------~-------------------------------------~~~~~~~  122 (228)
                      |.++| .+++.... +....   .+..        +                                     .+.+++.
T Consensus       150 v~viD-~t~~~~~~~i~~~~---~~~~~~~~~~~~~~~~~dg~~~~vd~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~  225 (373)
T 2mad_H          150 VGLVV-QGGSSDDQLLSSPT---CYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSG  225 (373)
T ss_pred             EEEEE-CCCCEEeEEcCCCc---eEEEEeCCCceEEEEcCCCCEEEEECCCcEEEEEeccccccCCcceeecceeEecCC
Confidence            99999 99888777 54321   1000        0                                     1111111


Q ss_pred             EEEEeeCCCeEEEEEccCCe--eEEEEecce--------eeeeeeEEEECCCCcEEEEeeC---------CCCeEEEEEc
Q 040370          123 FVLSCGKDSTVKLWEVSSGR--LVKQYLGAT--------HTQLRFQAVFNDTEEFVLSIDE---------PSNEIVIWDA  183 (228)
Q Consensus       123 ~l~~~~~d~~i~~wd~~~~~--~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~---------~d~~i~i~d~  183 (228)
                      .++..+.++.+.+.|+....  .+..+....        .+.....+.++|++..++++..         ..+.|.++|.
T Consensus       226 ~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~  305 (373)
T 2mad_H          226 RIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTG  305 (373)
T ss_pred             EEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEEC
Confidence            11111233445555553321  111111000        0111223667888888777643         1368999999


Q ss_pred             CCcceeEEeecCCCCCcEEEEeCCCCc-EEEEec-CCCCEEEeeec
Q 040370          184 LTAEKVAKWSSNHIGAPRWIEHSPAEA-AFITCG-TDRSVRFWKEI  227 (228)
Q Consensus       184 ~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~-~dg~i~vwd~~  227 (228)
                      .+++.+..+..+  ....+++|+||++ +++++. .++.|.++|+.
T Consensus       306 ~t~~vv~~i~~g--~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~  349 (373)
T 2mad_H          306 LVGQTSSQISLG--HDVDAISVAQDGGPDLYALSAGTEVLHIYDAG  349 (373)
T ss_pred             CCCEEEEEEECC--CCcCeEEECCCCCeEEEEEcCCCCeEEEEECC
Confidence            999998888433  3688999999999 787777 58999999963

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.64  E-value=2.3e-12  Score=92.92  Aligned_cols=200  Identities=9%  Similarity=0.015  Sum_probs=141.7

Q ss_pred             ecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCC
Q 040370           17 QDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVS   96 (228)
Q Consensus        17 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~   96 (228)
                      .....+.++++.++++..++...++.|.+|+.. ++... ..... . ...+..+++.++++++++...++.|..+|.. 
T Consensus        17 ~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~-~~~~~-~-~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-   91 (300)
T 2qc5_A           17 IPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKE-FEVPT-P-DAKVMCLIVSSLGDIWFTENGANKIGKLSKK-   91 (300)
T ss_dssp             STTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEE-EECSS-T-TCCEEEEEECTTSCEEEEETTTTEEEEECTT-
T ss_pred             CCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEE-EECCC-C-CCcceeEEECCCCCEEEEecCCCeEEEECCC-
Confidence            345688999999999988877778999999988 55432 22111 1 3568899999999887777778899999987 


Q ss_pred             CceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCC
Q 040370           97 ANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSN  176 (228)
Q Consensus        97 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  176 (228)
                      ++. ..+........+.++++.++++++++...++.|..+|.. ++.. .+...........+.+.+++...++ ...++
T Consensus        92 g~~-~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~-~~~~~~~~~~~~~i~~d~~g~l~v~-~~~~~  167 (300)
T 2qc5_A           92 GGF-TEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIY-EYDLPNKGSYPAFITLGSDNALWFT-ENQNN  167 (300)
T ss_dssp             SCE-EEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEE-EEECSSTTCCEEEEEECTTSSEEEE-ETTTT
T ss_pred             CCe-EEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEE-EccCCCCCCCceeEEECCCCCEEEE-ecCCC
Confidence            554 333322224568899999999888877778899999987 5544 2222212345677888898885554 44358


Q ss_pred             eEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeee
Q 040370          177 EIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKE  226 (228)
Q Consensus       177 ~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~  226 (228)
                      .|..+|. +++........+...+..+++++++.+.++....+.|.+|+.
T Consensus       168 ~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~  216 (300)
T 2qc5_A          168 SIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT  216 (300)
T ss_dssp             EEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT
T ss_pred             eEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC
Confidence            8999998 555443222234567889999999988877777777888874

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.64  E-value=2.4e-12  Score=92.78  Aligned_cols=198  Identities=10%  Similarity=0.024  Sum_probs=139.3

Q ss_pred             CcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCCCc
Q 040370           19 THNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSAN   98 (228)
Q Consensus        19 ~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~   98 (228)
                      ...+.++++.+++...++...++.|..+|.. ++.. ...... . ...+.++++.++++++++...++.|..+|.. ++
T Consensus        61 ~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~-~~~~~~-~-~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~  135 (300)
T 2qc5_A           61 DAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFT-EYPLPQ-P-DSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GT  135 (300)
T ss_dssp             TCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE-EEECSS-T-TCCEEEEEECSTTCEEEEETTTTEEEEECTT-SC
T ss_pred             CCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeE-EecCCC-C-CCCCccceECCCCCEEEEccCCCeEEEECCC-CC
Confidence            3678999999999888877778899999987 5542 222111 1 3568899999999988877778899999987 55


Q ss_pred             eeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCCeE
Q 040370           99 CVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEI  178 (228)
Q Consensus        99 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i  178 (228)
                      .. .+........+..+++.++++..++...++.|..+|. +++... +...........+.+.+++...++... .+.|
T Consensus       136 ~~-~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~-~~~~~~~~~~~~i~~d~~g~l~v~~~~-~~~i  211 (300)
T 2qc5_A          136 IY-EYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLEE-YPLPTNAAAPVGITSGNDGALWFVEIM-GNKI  211 (300)
T ss_dssp             EE-EEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE-EECSSTTCCEEEEEECTTSSEEEEETT-TTEE
T ss_pred             EE-EccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEEE-eeCCCCCCCcceEEECCCCCEEEEccC-CCEE
Confidence            44 2222222456789999999997776666788999998 555443 322222345677888888876555433 5789


Q ss_pred             EEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeee
Q 040370          179 VIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKE  226 (228)
Q Consensus       179 ~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~  226 (228)
                      .+||. +++........+...+.++++++++++.++...++.|..||.
T Consensus       212 ~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~  258 (300)
T 2qc5_A          212 GRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITN  258 (300)
T ss_dssp             EEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECT
T ss_pred             EEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEeccCCCeEEEECC
Confidence            99998 555443322345567899999999997777767788888874

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.64  E-value=1.1e-14  Score=117.04  Aligned_cols=196  Identities=9%  Similarity=-0.055  Sum_probs=124.8

Q ss_pred             EEEEEeCCCCEEEEecCCCe-------------EEEEEcccceE--EeeeccceeeeccceeeEEeCCCCCeEEEEecCC
Q 040370           23 RSVSFHPSGDFLLAGTDHPI-------------AHLYDVNTFQC--YLSANVPEISVNGAINQVRYSSTGGMYVTASKDG   87 (228)
Q Consensus        23 ~~~~~~~~~~~l~~~~~d~~-------------i~vw~~~~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg   87 (228)
                      ..++|+|||+.|+.++.+..             |++|++.++..  .......  .+...+..+.|+|+|++|+.++.++
T Consensus       171 ~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~--~~~~~~~~~~~SpDG~~l~~~~~~~  248 (695)
T 2bkl_A          171 ATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERT--GDPTTFLQSDLSRDGKYLFVYILRG  248 (695)
T ss_dssp             CCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCC--CCTTCEEEEEECTTSCCEEEEEEET
T ss_pred             cceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecC--CCCEEEEEEEECCCCCEEEEEEeCC
Confidence            68999999999998887765             99999987652  1111111  1135678999999999998887666


Q ss_pred             ----eEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEee---CCCeEEEEEccCCee--EEEEecceeeeeeeE
Q 040370           88 ----AIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCG---KDSTVKLWEVSSGRL--VKQYLGATHTQLRFQ  158 (228)
Q Consensus        88 ----~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~---~d~~i~~wd~~~~~~--~~~~~~~~~~~~~~~  158 (228)
                          .|.++|..+++. ..+..+  ...+....+ +++.+++.+.   .++.|.+||+.+++.  ...+..+.....+..
T Consensus       249 ~~~~~l~~~~~~~~~~-~~l~~~--~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~  324 (695)
T 2bkl_A          249 WSENDVYWKRPGEKDF-RLLVKG--VGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLS  324 (695)
T ss_dssp             TTEEEEEEECTTCSSC-EEEEEC--SSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEE
T ss_pred             CCceEEEEEcCCCCce-EEeecC--CCceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEE
Confidence                677887655543 344433  223444555 5566444443   257899999987653  233332222334555


Q ss_pred             EEECCCCcEEEEeeCCCCeEEEEEcC-CcceeEEeecCCCCCcEEEEeCCCCcEEE----EecCCCCEEEeee
Q 040370          159 AVFNDTEEFVLSIDEPSNEIVIWDAL-TAEKVAKWSSNHIGAPRWIEHSPAEAAFI----TCGTDRSVRFWKE  226 (228)
Q Consensus       159 ~~~~~~~~~~~~~~~~d~~i~i~d~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~----s~~~dg~i~vwd~  226 (228)
                      +.++ ++. ++.+...|+..++|.+. +++....+.....+.+..+.++|+++.++    +....+.|.+||+
T Consensus       325 ~~~~-~~~-lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~  395 (695)
T 2bkl_A          325 VSIV-GGH-LSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSV  395 (695)
T ss_dssp             EEEE-TTE-EEEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEET
T ss_pred             EEEE-CCE-EEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEEC
Confidence            6666 444 44445557888887654 35555544223366778889999887766    3334577888885

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.61  E-value=3.3e-12  Score=92.33  Aligned_cols=197  Identities=11%  Similarity=0.088  Sum_probs=131.7

Q ss_pred             CcceEEEEEeCC-CCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCCC
Q 040370           19 THNVRSVSFHPS-GDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSA   97 (228)
Q Consensus        19 ~~~v~~~~~~~~-~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~   97 (228)
                      ..-.-+..|+|+ +.++++...++.|..||..+++... ...     ...+.+++++|+++++++ . ++.|.+||.+++
T Consensus        12 ~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~-~~~-----~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g   83 (297)
T 3g4e_A           12 CRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQR-VTM-----DAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQ   83 (297)
T ss_dssp             CSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEE-EEC-----SSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTT
T ss_pred             CccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEEE-EeC-----CCceEEEEECCCCCEEEE-E-CCeEEEEECCCC
Confidence            345568899995 4556677778999999998876422 211     467899999999995554 4 568999999877


Q ss_pred             ceeeEEecc--cccceeEEEEECCCCCEEEEeeCC---------CeEEEEEccC-CeeEEEEecceeeeeeeEEEECCCC
Q 040370           98 NCVRSIVGA--HGTAEATSANFTKDQRFVLSCGKD---------STVKLWEVSS-GRLVKQYLGATHTQLRFQAVFNDTE  165 (228)
Q Consensus        98 ~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~d---------~~i~~wd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  165 (228)
                      +........  .....+..++++|+|+++++...+         ..-.+|.+.. ++... +..  .......++++|++
T Consensus        84 ~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~-~~~--~~~~pngi~~spdg  160 (297)
T 3g4e_A           84 SAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKK-YFD--QVDISNGLDWSLDH  160 (297)
T ss_dssp             EEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEE-EEE--EESBEEEEEECTTS
T ss_pred             cEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEE-Eee--ccccccceEEcCCC
Confidence            654333221  113457889999999976654321         2234554432 33322 221  23345678999999


Q ss_pred             cEEEEeeCCCCeEEEEEc--CCccee--EEee--cCCCCCcEEEEeCCCCcEEEEecCCCCEEEeee
Q 040370          166 EFVLSIDEPSNEIVIWDA--LTAEKV--AKWS--SNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKE  226 (228)
Q Consensus       166 ~~~~~~~~~d~~i~i~d~--~~~~~~--~~~~--~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~  226 (228)
                      +.++.+...++.|.+||+  .++...  ..+.  ..+.+.+..++++++|++.++...++.|..||.
T Consensus       161 ~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~  227 (297)
T 3g4e_A          161 KIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDP  227 (297)
T ss_dssp             CEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECT
T ss_pred             CEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcC
Confidence            988877776799999987  445432  1111  223456789999999988888777788999885

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.61  E-value=5.2e-12  Score=92.50  Aligned_cols=192  Identities=8%  Similarity=-0.013  Sum_probs=129.6

Q ss_pred             ceEEEEEeCCC-CEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCCCce
Q 040370           21 NVRSVSFHPSG-DFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANC   99 (228)
Q Consensus        21 ~v~~~~~~~~~-~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~   99 (228)
                      -..+..|+|++ ..+++...++.|..||.++++... ...     ...+.+++|+|+++++++. .+ .|.+||..+++.
T Consensus        50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~-~~~-----~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~  121 (326)
T 2ghs_A           50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKTV-HAL-----PFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVL  121 (326)
T ss_dssp             BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE-EEC-----SSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCE
T ss_pred             CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEE-EEC-----CCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcE
Confidence            45788999974 456677778999999998876432 211     4568999999999876654 44 499999988775


Q ss_pred             eeEEecc--cccceeEEEEECCCCCEEEEeeC------CCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEe
Q 040370          100 VRSIVGA--HGTAEATSANFTKDQRFVLSCGK------DSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSI  171 (228)
Q Consensus       100 ~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~------d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (228)
                      .......  .....+..+.++|+|+++++...      .+.|..+|  +++... +..  .......++++|+++.++.+
T Consensus       122 ~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~-~~~--~~~~~~~i~~s~dg~~lyv~  196 (326)
T 2ghs_A          122 TLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTK-LFA--DISIPNSICFSPDGTTGYFV  196 (326)
T ss_dssp             EEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEE-EEE--EESSEEEEEECTTSCEEEEE
T ss_pred             EEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEE-eeC--CCcccCCeEEcCCCCEEEEE
Confidence            4332211  11246889999999987665542      24566666  454332 221  22344578899999988777


Q ss_pred             eCCCCeEEEEEcC--Cc-ce-----eEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeee
Q 040370          172 DEPSNEIVIWDAL--TA-EK-----VAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKE  226 (228)
Q Consensus       172 ~~~d~~i~i~d~~--~~-~~-----~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~  226 (228)
                      ...++.|.+||..  ++ ..     ...+ ......+..++++++|.+.++...++.|.+||.
T Consensus       197 ~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~-~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~  258 (326)
T 2ghs_A          197 DTKVNRLMRVPLDARTGLPTGKAEVFIDS-TGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT  258 (326)
T ss_dssp             ETTTCEEEEEEBCTTTCCBSSCCEEEEEC-TTSSSEEEEEEECTTSCEEEEEETTTEEEEECT
T ss_pred             ECCCCEEEEEEcccccCCcccCceEEEEC-CCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC
Confidence            7667899999986  55 31     1112 223456788999999988777766778888874

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.59  E-value=7.7e-12  Score=91.61  Aligned_cols=192  Identities=12%  Similarity=0.075  Sum_probs=122.4

Q ss_pred             ecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEec------CCeEE
Q 040370           17 QDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASK------DGAIR   90 (228)
Q Consensus        17 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~------dg~v~   90 (228)
                      .....+.+++++|+++++++. .+ .|.+||.++++...............+..++++|+|+++++...      .+.|.
T Consensus        87 ~~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~  164 (326)
T 2ghs_A           87 ALPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIY  164 (326)
T ss_dssp             ECSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEE
T ss_pred             ECCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEE
Confidence            345689999999999877755 44 48999998877543222111111246889999999987665542      24555


Q ss_pred             EEeCCCCceeeEEecccccceeEEEEECCCCCEEEEe-eCCCeEEEEEcc--CC-eeE--EEEe-cceeeeeeeEEEECC
Q 040370           91 LWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSC-GKDSTVKLWEVS--SG-RLV--KQYL-GATHTQLRFQAVFND  163 (228)
Q Consensus        91 iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~d~~i~~wd~~--~~-~~~--~~~~-~~~~~~~~~~~~~~~  163 (228)
                      .++  +++... +...  ......++|+|+++.++.+ +.++.|.+||+.  ++ +..  ..+. ..........+.+.+
T Consensus       165 ~~~--~g~~~~-~~~~--~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~  239 (326)
T 2ghs_A          165 HVA--KGKVTK-LFAD--ISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDA  239 (326)
T ss_dssp             EEE--TTEEEE-EEEE--ESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECT
T ss_pred             EEe--CCcEEE-eeCC--CcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECC
Confidence            566  444332 2221  3346789999999876554 457899999986  55 321  1121 111123445688888


Q ss_pred             CCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeC-CCCcEEE-EecCC
Q 040370          164 TEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHS-PAEAAFI-TCGTD  218 (228)
Q Consensus       164 ~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~-s~~~d  218 (228)
                      ++.+.++... ++.|.+||. +++....+ ..+...+.+++|+ |+++.|+ +...+
T Consensus       240 ~G~lwva~~~-~~~v~~~d~-~g~~~~~i-~~~~~~~~~~af~g~d~~~L~vt~~~~  293 (326)
T 2ghs_A          240 EGHIWNARWG-EGAVDRYDT-DGNHIARY-EVPGKQTTCPAFIGPDASRLLVTSARE  293 (326)
T ss_dssp             TSCEEEEEET-TTEEEEECT-TCCEEEEE-ECSCSBEEEEEEESTTSCEEEEEEBCT
T ss_pred             CCCEEEEEeC-CCEEEEECC-CCCEEEEE-ECCCCCcEEEEEecCCCCEEEEEecCC
Confidence            8877666544 588999998 56666655 3455679999998 8877654 44443

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.59  E-value=2.1e-13  Score=109.60  Aligned_cols=197  Identities=14%  Similarity=0.122  Sum_probs=126.3

Q ss_pred             cCcceEEEEEeCCCCEEEE-----ecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCe----
Q 040370           18 DTHNVRSVSFHPSGDFLLA-----GTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGA----   88 (228)
Q Consensus        18 ~~~~v~~~~~~~~~~~l~~-----~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~----   88 (228)
                      |...+..++|||||++||-     |+....|+++|+++++..... .   . ......++|+ |++.|+.++.+..    
T Consensus       127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~-~---~-~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~  200 (693)
T 3iuj_A          127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETP-L---K-DVKFSGISWL-GNEGFFYSSYDKPDGSE  200 (693)
T ss_dssp             SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEE-E---E-EEESCCCEEE-TTTEEEEEESSCCC---
T ss_pred             CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccc-c---C-CceeccEEEe-CCCEEEEEEecCccccc
Confidence            3446888999999999984     344468999999998864431 1   1 1124678999 9999998887743    


Q ss_pred             ---------EEEEeCCCCce--eeEEeccc-ccceeEEEEECCCCCEEEEee----CCCeEEEEEccCCe-eEEEEecce
Q 040370           89 ---------IRLWDGVSANC--VRSIVGAH-GTAEATSANFTKDQRFVLSCG----KDSTVKLWEVSSGR-LVKQYLGAT  151 (228)
Q Consensus        89 ---------v~iwd~~~~~~--~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~----~d~~i~~wd~~~~~-~~~~~~~~~  151 (228)
                               |++|++.++..  ...+.... +......+.|+||+++|+...    .+..|+++|+.++. ....+... 
T Consensus       201 ~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~-  279 (693)
T 3iuj_A          201 LSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGD-  279 (693)
T ss_dssp             ----CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECS-
T ss_pred             ccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCC-
Confidence                     99999887653  22222221 133467899999999876443    23589999997763 33344332 


Q ss_pred             eeeeeeEEEECCCCcEEEEeeCC---CCeEEEEEcCCcce--eEEeecCCCCCcEEEEeCCCCcEEEEecC-CC--CEEE
Q 040370          152 HTQLRFQAVFNDTEEFVLSIDEP---SNEIVIWDALTAEK--VAKWSSNHIGAPRWIEHSPAEAAFITCGT-DR--SVRF  223 (228)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~---d~~i~i~d~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-dg--~i~v  223 (228)
                       ....... +++++..++.....   .+.|..+|+.++..  ...+ ..|...+.  .|+++++.|+.... ++  .|.+
T Consensus       280 -~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l-~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~  354 (693)
T 3iuj_A          280 -LDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDL-IPERQQVL--TVHSGSGYLFAEYMVDATARVEQ  354 (693)
T ss_dssp             -SSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEE-ECCCSSCE--EEEEETTEEEEEEEETTEEEEEE
T ss_pred             -CCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEE-ecCCCCEE--EEEEECCEEEEEEEECCeeEEEE
Confidence             2222222 44555555444433   36899999987654  2334 34555554  88898887776664 44  5777


Q ss_pred             eee
Q 040370          224 WKE  226 (228)
Q Consensus       224 wd~  226 (228)
                      |++
T Consensus       355 ~d~  357 (693)
T 3iuj_A          355 FDY  357 (693)
T ss_dssp             ECT
T ss_pred             EEC
Confidence            764

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.58  E-value=6.5e-12  Score=91.12  Aligned_cols=196  Identities=9%  Similarity=0.053  Sum_probs=129.4

Q ss_pred             EeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEE----Eec-----
Q 040370           15 VIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVT----ASK-----   85 (228)
Q Consensus        15 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~----~~~-----   85 (228)
                      +..+...+..++++++|+++++...++.|.+|+.+ ++...............++.+++.|+|++.++    |..     
T Consensus        81 ~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~  159 (305)
T 3dr2_A           81 LLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQG  159 (305)
T ss_dssp             EEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGS
T ss_pred             EeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccc
Confidence            33456778999999999977776667889999986 54332221111111345788999999998876    332     


Q ss_pred             --------CCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCC------CeEEEEEccCCeeE--EEEec
Q 040370           86 --------DGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKD------STVKLWEVSSGRLV--KQYLG  149 (228)
Q Consensus        86 --------dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d------~~i~~wd~~~~~~~--~~~~~  149 (228)
                              .+.|..+|..+++..... .   ......++|+|+++.|+.+...      +.|++||+..+...  ..+..
T Consensus       160 ~~~~~~~~~~~v~~~d~~~g~~~~~~-~---~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~  235 (305)
T 3dr2_A          160 CPADPELAHHSVYRLPPDGSPLQRMA-D---LDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFAS  235 (305)
T ss_dssp             CCCCCSSSCEEEEEECSSSCCCEEEE-E---ESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEEC
T ss_pred             cccccccCCCeEEEEcCCCCcEEEEe-c---CCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEE
Confidence                    256888888767654433 2   3456789999999988777665      68999998765411  11111


Q ss_pred             ceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEE
Q 040370          150 ATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVR  222 (228)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~  222 (228)
                      . .......+.+.+++...++ ..  +.|.+|+. .++.+..+. ... .+.+++|+|+++.|+.++.++..+
T Consensus       236 ~-~~~~pdgi~~d~~G~lwv~-~~--~gv~~~~~-~g~~~~~~~-~~~-~~~~~~f~~d~~~L~it~~~~l~~  301 (305)
T 3dr2_A          236 V-PDGLPDGFCVDRGGWLWSS-SG--TGVCVFDS-DGQLLGHIP-TPG-TASNCTFDQAQQRLFITGGPCLWM  301 (305)
T ss_dssp             C-SSSCCCSEEECTTSCEEEC-CS--SEEEEECT-TSCEEEEEE-CSS-CCCEEEECTTSCEEEEEETTEEEE
T ss_pred             C-CCCCCCeEEECCCCCEEEe-cC--CcEEEECC-CCCEEEEEE-CCC-ceeEEEEeCCCCEEEEEcCCeEEE
Confidence            0 1223346778888885444 33  45999997 566666663 233 588999999988888777665333

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.57  E-value=5.9e-12  Score=94.09  Aligned_cols=194  Identities=13%  Similarity=0.104  Sum_probs=134.5

Q ss_pred             ceEEEEEeCCCCEEEEecCC------CeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEe----------
Q 040370           21 NVRSVSFHPSGDFLLAGTDH------PIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTAS----------   84 (228)
Q Consensus        21 ~v~~~~~~~~~~~l~~~~~d------~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~----------   84 (228)
                      .-..+...|+| .++++..+      +.|.+.|.++++.+......... ...-..+.|+|+++.+++..          
T Consensus       139 ~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~-~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g  216 (462)
T 2ece_A          139 RLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGD-QYLAYDFWWNLPNEVLVSSEWAVPNTIEDG  216 (462)
T ss_dssp             EEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTT-CCCCCCEEEETTTTEEEECBCCCHHHHTTC
T ss_pred             cccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCC-ccccceEEECCCCCEEEEccCcCccccccc
Confidence            44567788999 66655444      78999999999888776643211 22345688999999888874          


Q ss_pred             ---------cCCeEEEEeCCCCceeeEEecccccceeEEEEE--CCCCCEEEEeeC------CCeEEEEEccCCeeE--E
Q 040370           85 ---------KDGAIRLWDGVSANCVRSIVGAHGTAEATSANF--TKDQRFVLSCGK------DSTVKLWEVSSGRLV--K  145 (228)
Q Consensus        85 ---------~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~l~~~~~------d~~i~~wd~~~~~~~--~  145 (228)
                               .+..|.+||+.+++...++...........+.|  +|++++++.++.      +++|.+|....++..  .
T Consensus       217 ~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~  296 (462)
T 2ece_A          217 LKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEK  296 (462)
T ss_dssp             CCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEE
T ss_pred             cchhhhhhccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEE
Confidence                     368999999999888888776422234445555  999998887774      568888776554321  1


Q ss_pred             EEeccee----------------eeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCc---ceeEEeecCCC---------
Q 040370          146 QYLGATH----------------TQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTA---EKVAKWSSNHI---------  197 (228)
Q Consensus       146 ~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~---~~~~~~~~~~~---------  197 (228)
                      .+.....                ......+.+++++++++++....+.|.+||+...   +.+..+..+..         
T Consensus       297 vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G  376 (462)
T 2ece_A          297 VIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAG  376 (462)
T ss_dssp             EEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTS
T ss_pred             EEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeecccccccc
Confidence            1110000                2346788899999999999988899999998632   34444433311         


Q ss_pred             ----CCcEEEEeCCCCcEEEEec
Q 040370          198 ----GAPRWIEHSPAEAAFITCG  216 (228)
Q Consensus       198 ----~~v~~~~~~~~~~~l~s~~  216 (228)
                          +....++++|+|++|+.+.
T Consensus       377 ~~~~ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          377 HKLTGAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             CCCCSCCCCEEECTTSSEEEEEC
T ss_pred             ccCCCCCCEEEEcCCCCEEEEEc
Confidence                1367899999999998887

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.56  E-value=8.1e-12  Score=94.22  Aligned_cols=197  Identities=10%  Similarity=0.008  Sum_probs=130.5

Q ss_pred             EEEeCCCCEEEEecCCC--eEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCCCceeeE
Q 040370           25 VSFHPSGDFLLAGTDHP--IAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRS  102 (228)
Q Consensus        25 ~~~~~~~~~l~~~~~d~--~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~  102 (228)
                      ++|+|+++.|+++..++  .|.+++...+................+.+++++|++..|+.+..++.|+.||..++.....
T Consensus       176 ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~  255 (409)
T 3hrp_A          176 PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLI  255 (409)
T ss_dssp             CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEE
T ss_pred             eeEecCCCcEEEEecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEE
Confidence            89999999988887765  7888888765432222100000145678899999555566677789999999987653222


Q ss_pred             ----EecccccceeEEEEECCC-CCEEEEeeCCCeEEEEEccCCeeEEEEecce-------------eeeeeeEEEECCC
Q 040370          103 ----IVGAHGTAEATSANFTKD-QRFVLSCGKDSTVKLWEVSSGRLVKQYLGAT-------------HTQLRFQAVFNDT  164 (228)
Q Consensus       103 ----~~~~~~~~~i~~~~~~~~-~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~  164 (228)
                          ........+...++|+|+ +.++++-..++.|+.||....  ...+.+..             .-.....++++++
T Consensus       256 ~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~d  333 (409)
T 3hrp_A          256 KQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDED  333 (409)
T ss_dssp             EECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTT
T ss_pred             ecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCC
Confidence                111110111128999995 566666667889999997643  22332211             0123567899999


Q ss_pred             CcEEEEeeC-CCCeEEEEEcCCcceeEEeecCC---------------CCCcEEEEeCCCCcEEEEecCCCCEEEeee
Q 040370          165 EEFVLSIDE-PSNEIVIWDALTAEKVAKWSSNH---------------IGAPRWIEHSPAEAAFITCGTDRSVRFWKE  226 (228)
Q Consensus       165 ~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~~~---------------~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~  226 (228)
                      +. ++++.. .++.|+.||+.++......  ++               ......+++++++.++++-..+++|+.+++
T Consensus       334 G~-lyvad~~~~~~I~~~~~~~G~v~~~~--g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~  408 (409)
T 3hrp_A          334 GN-FYIVDGFKGYCLRKLDILDGYVSTVA--GQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV  408 (409)
T ss_dssp             CC-EEEEETTTTCEEEEEETTTTEEEEEE--ECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred             CC-EEEEeCCCCCEEEEEECCCCEEEEEe--CCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence            98 445555 6799999998777643322  22               245889999999998888888899988775

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.56  E-value=4.1e-13  Score=108.68  Aligned_cols=196  Identities=11%  Similarity=-0.003  Sum_probs=123.1

Q ss_pred             eEEEEEeCCCCEEEEecCCCe--------------EEEEEcccceE--EeeeccceeeeccceeeEEeCCCCCeEEEEec
Q 040370           22 VRSVSFHPSGDFLLAGTDHPI--------------AHLYDVNTFQC--YLSANVPEISVNGAINQVRYSSTGGMYVTASK   85 (228)
Q Consensus        22 v~~~~~~~~~~~l~~~~~d~~--------------i~vw~~~~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~   85 (228)
                      +..++|+|| +.|+.++.++.              |++|++.++..  ....... .+ ...+..+.|+|+|++|+..+.
T Consensus       211 ~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~-~~-~~~~~~~~~SpDG~~l~~~~~  287 (741)
T 1yr2_A          211 FSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATP-EL-PKRGHGASVSSDGRWVVITSS  287 (741)
T ss_dssp             SCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCT-TC-TTCEEEEEECTTSCEEEEEEE
T ss_pred             eccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccC-CC-CeEEEEEEECCCCCEEEEEEE
Confidence            357899999 98888776543              88999876542  1111111 01 234788999999998887775


Q ss_pred             CC-----eEEEEeCCCC--ceeeEEecccccceeEEEEECCCCCEEEEeeCC----CeEEEEEccCCe-eEEEEecceee
Q 040370           86 DG-----AIRLWDGVSA--NCVRSIVGAHGTAEATSANFTKDQRFVLSCGKD----STVKLWEVSSGR-LVKQYLGATHT  153 (228)
Q Consensus        86 dg-----~v~iwd~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d----~~i~~wd~~~~~-~~~~~~~~~~~  153 (228)
                      ++     .|.+||+.++  +....+..+.  ...... ++|+++.|+..+.+    +.|.+||+.++. ....+... +.
T Consensus       288 ~~~~~~~~l~~~d~~~~~~~~~~~l~~~~--~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~-~~  363 (741)
T 1yr2_A          288 EGTDPVNTVHVARVTNGKIGPVTALIPDL--KAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPE-SK  363 (741)
T ss_dssp             CTTCSCCEEEEEEEETTEECCCEEEECSS--SSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECC-CS
T ss_pred             ccCCCcceEEEEECCCCCCcccEEecCCC--CceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecC-CC
Confidence            54     8999999877  3144554432  223333 34888888877653    459999998752 33333322 23


Q ss_pred             eeeeEEEECCCCcEEEEeeCCCCeEEEEEcC-CcceeEEeecCCCCCcEEEEeCCCCcEEEE----ecCCCCEEEeee
Q 040370          154 QLRFQAVFNDTEEFVLSIDEPSNEIVIWDAL-TAEKVAKWSSNHIGAPRWIEHSPAEAAFIT----CGTDRSVRFWKE  226 (228)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s----~~~dg~i~vwd~  226 (228)
                      ..+..+.+.  +..++.+...|+..++|.+. +++....+...+.+.+..+.++|+++.|+.    ....+.|.+||+
T Consensus       364 ~~l~~~~~~--~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~  439 (741)
T 1yr2_A          364 DNLESVGIA--GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDP  439 (741)
T ss_dssp             SEEEEEEEE--BTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEET
T ss_pred             CeEEEEEEE--CCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEEC
Confidence            334455555  44555555557877777554 455555553334677889999998876652    234577888885

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.55  E-value=1.6e-11  Score=86.34  Aligned_cols=205  Identities=7%  Similarity=-0.056  Sum_probs=139.4

Q ss_pred             eeEEEeecCcc--eEEEEEeCCCCEEEEecC--CCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEE-EEec
Q 040370           11 RAFRVIQDTHN--VRSVSFHPSGDFLLAGTD--HPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYV-TASK   85 (228)
Q Consensus        11 ~~~~~~~~~~~--v~~~~~~~~~~~l~~~~~--d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~   85 (228)
                      +....+.|...  ...++|+|++.++++.+.  ++.|.++|+.+++.+.......   ......+++.  ++.++ +.-.
T Consensus        10 ~vv~~~p~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~---~~fgeGi~~~--g~~lyv~t~~   84 (266)
T 2iwa_A           10 EVLNEFPHDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDD---SYFGEGLTLL--NEKLYQVVWL   84 (266)
T ss_dssp             EEEEEEECCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCT---TCCEEEEEEE--TTEEEEEETT
T ss_pred             eEEEEEECCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCC---CcceEEEEEe--CCEEEEEEec
Confidence            34455567643  689999998654444443  6899999999999877665422   1122344554  44444 4456


Q ss_pred             CCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeee---eeeEEEEC
Q 040370           86 DGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQ---LRFQAVFN  162 (228)
Q Consensus        86 dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~---~~~~~~~~  162 (228)
                      ++.+.++|..+.+.+..+... .. .-  ..+++|++.++.+..++.|.++|..+.+.+..+.......   ....+.+.
T Consensus        85 ~~~v~viD~~t~~v~~~i~~g-~~-~g--~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~  160 (266)
T 2iwa_A           85 KNIGFIYDRRTLSNIKNFTHQ-MK-DG--WGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI  160 (266)
T ss_dssp             CSEEEEEETTTTEEEEEEECC-SS-SC--CEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE
T ss_pred             CCEEEEEECCCCcEEEEEECC-CC-Ce--EEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE
Confidence            889999999999998888653 11 11  2345577777777778899999999988887776432111   23455565


Q ss_pred             CCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCC------------CCCcEEEEeCCCCc-EEEEecCCCCEEEeee
Q 040370          163 DTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNH------------IGAPRWIEHSPAEA-AFITCGTDRSVRFWKE  226 (228)
Q Consensus       163 ~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~------------~~~v~~~~~~~~~~-~l~s~~~dg~i~vwd~  226 (228)
                       ++ .+++....++.|.+.|..+++....+..+.            ....+.|+|+|+++ +++++...+.+.+-++
T Consensus       161 -dg-~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l  235 (266)
T 2iwa_A          161 -NG-EVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKL  235 (266)
T ss_dssp             -TT-EEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEE
T ss_pred             -CC-EEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEE
Confidence             55 555656557999999999999888874320            13568999999875 5666667787777665

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.54  E-value=1.2e-12  Score=97.23  Aligned_cols=140  Identities=14%  Similarity=0.151  Sum_probs=107.2

Q ss_pred             eecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCC
Q 040370           16 IQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGV   95 (228)
Q Consensus        16 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~   95 (228)
                      ..+.. |+.++|  ++++|+++ .++.|++||+.+........    .+...+.++.+.+..  +++++.||.|.+||+.
T Consensus        85 ~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv~sl~~~~~~~----~~~~~v~~i~~~~p~--~av~~~dG~L~v~dl~  154 (388)
T 1xip_A           85 KEIPD-VIFVCF--HGDQVLVS-TRNALYSLDLEELSEFRTVT----SFEKPVFQLKNVNNT--LVILNSVNDLSALDLR  154 (388)
T ss_dssp             EECTT-EEEEEE--ETTEEEEE-ESSEEEEEESSSTTCEEEEE----ECSSCEEEEEECSSE--EEEEETTSEEEEEETT
T ss_pred             eeCCC-eeEEEE--CCCEEEEE-cCCcEEEEEchhhhccCccc----eeecceeeEEecCCC--EEEEECCCCEEEEEcc
Confidence            35677 999999  89999999 78999999998765333222    125567787776543  8889999999999999


Q ss_pred             CCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCee--EEEEec----c---eeeeeeeEEEECCCCc
Q 040370           96 SANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRL--VKQYLG----A---THTQLRFQAVFNDTEE  166 (228)
Q Consensus        96 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~--~~~~~~----~---~~~~~~~~~~~~~~~~  166 (228)
                      +++...    .  ...|++++|+|+|  ++.|..||.+++|+...++.  ...+..    .   .+...+..+.|.+++.
T Consensus       155 ~~~~~~----~--~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~  226 (388)
T 1xip_A          155 TKSTKQ----L--AQNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQD  226 (388)
T ss_dssp             TCCEEE----E--EESEEEEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSE
T ss_pred             CCcccc----c--cCCceEEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCe
Confidence            877643    1  4579999999999  67899999999999987764  445521    1   1457789999999999


Q ss_pred             EEEEeeC
Q 040370          167 FVLSIDE  173 (228)
Q Consensus       167 ~~~~~~~  173 (228)
                      ++++-..
T Consensus       227 flv~y~~  233 (388)
T 1xip_A          227 FLAVFGN  233 (388)
T ss_dssp             EEEEEEC
T ss_pred             EEEEEcC
Confidence            8887443

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.54  E-value=2.9e-11  Score=87.67  Aligned_cols=202  Identities=8%  Similarity=-0.028  Sum_probs=131.3

Q ss_pred             eEEEeecCcceEEEEEeCCCC-EEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEE
Q 040370           12 AFRVIQDTHNVRSVSFHPSGD-FLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIR   90 (228)
Q Consensus        12 ~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~   90 (228)
                      ..++...........|+|+++ +++++..++.|..|+.. ++. ..+...    ...+..++++++|+++++...++.|.
T Consensus        37 ~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~~-~~~~~~----~~~~~gl~~d~dG~l~v~~~~~~~v~  110 (305)
T 3dr2_A           37 LLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GTV-DVLLDA----TAFTNGNAVDAQQRLVHCEHGRRAIT  110 (305)
T ss_dssp             CEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SCE-EEEEES----CSCEEEEEECTTSCEEEEETTTTEEE
T ss_pred             eEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CCE-EEEeCC----CCccceeeECCCCCEEEEECCCCEEE
Confidence            344445566778999999998 56677788999999984 442 222211    45688999999999766666668899


Q ss_pred             EEeCCCCceeeEEeccc--ccceeEEEEECCCCCEEEE----eeC-------------CCeEEEEEccCCeeEEEEecce
Q 040370           91 LWDGVSANCVRSIVGAH--GTAEATSANFTKDQRFVLS----CGK-------------DSTVKLWEVSSGRLVKQYLGAT  151 (228)
Q Consensus        91 iwd~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~----~~~-------------d~~i~~wd~~~~~~~~~~~~~~  151 (228)
                      +|+.. ++.........  ....+..++++|+|++.++    |..             .+.|..+|..+++.....    
T Consensus       111 ~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~----  185 (305)
T 3dr2_A          111 RSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA----  185 (305)
T ss_dssp             EECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE----
T ss_pred             EECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe----
Confidence            99986 54322221111  1124567999999998886    332             256888887666543322    


Q ss_pred             eeeeeeEEEECCCCcEEEEeeCC-----CCeEEEEEcCCccee--EEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEe
Q 040370          152 HTQLRFQAVFNDTEEFVLSIDEP-----SNEIVIWDALTAEKV--AKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFW  224 (228)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~-----d~~i~i~d~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vw  224 (228)
                      .......++++|+++.++++...     ++.|.+|++..+...  ..+.....+.+..++++++|++.++ ..+| |.+|
T Consensus       186 ~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv~-~~~g-v~~~  263 (305)
T 3dr2_A          186 DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWSS-SGTG-VCVF  263 (305)
T ss_dssp             EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEEC-CSSE-EEEE
T ss_pred             cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEEe-cCCc-EEEE
Confidence            12234568899999988777663     278999998754311  1121223445667899999985554 4444 8887


Q ss_pred             ee
Q 040370          225 KE  226 (228)
Q Consensus       225 d~  226 (228)
                      +.
T Consensus       264 ~~  265 (305)
T 3dr2_A          264 DS  265 (305)
T ss_dssp             CT
T ss_pred             CC
Confidence            64

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.53  E-value=4.4e-12  Score=95.34  Aligned_cols=202  Identities=10%  Similarity=0.030  Sum_probs=132.0

Q ss_pred             EEEEeCCCCEEEEec----------CCCeEEEEEcccceEEeeeccc-eee--eccceeeEEeCCCCCeEEEEec--CCe
Q 040370           24 SVSFHPSGDFLLAGT----------DHPIAHLYDVNTFQCYLSANVP-EIS--VNGAINQVRYSSTGGMYVTASK--DGA   88 (228)
Q Consensus        24 ~~~~~~~~~~l~~~~----------~d~~i~vw~~~~~~~~~~~~~~-~~~--~~~~i~~~~~~~~~~~l~~~~~--dg~   88 (228)
                      .++++||+++++++.          .++.|.++|..+++.+..+... ...  .......+.|+|+|++++.+..  ++.
T Consensus       122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~  201 (426)
T 3c75_H          122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPA  201 (426)
T ss_dssp             EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCE
T ss_pred             ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCe
Confidence            899999999988876          4678999999999877766542 000  0124567899999999998874  578


Q ss_pred             EEEEeCCCCceeeEEecccc-----cceeEEEEE-------------------------------------CCCCCEEEE
Q 040370           89 IRLWDGVSANCVRSIVGAHG-----TAEATSANF-------------------------------------TKDQRFVLS  126 (228)
Q Consensus        89 v~iwd~~~~~~~~~~~~~~~-----~~~i~~~~~-------------------------------------~~~~~~l~~  126 (228)
                      |.+.|+.+++.+..+.....     ...-..+.+                                     .+++..++.
T Consensus       202 VsVID~~t~kvv~~I~v~g~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~  281 (426)
T 3c75_H          202 VGVVDLEGKTFDRMLDVPDCYHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVW  281 (426)
T ss_dssp             EEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEE
T ss_pred             EEEEECCCCeEEEEEEcCCceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEE
Confidence            99999999988877765210     000001223                                     333333333


Q ss_pred             eeCCCeEEEEEccCCeeE--EEEecc--------eeeeeeeEEEECCCCcEEEEeeC---------CCCeEEEEEcCCcc
Q 040370          127 CGKDSTVKLWEVSSGRLV--KQYLGA--------THTQLRFQAVFNDTEEFVLSIDE---------PSNEIVIWDALTAE  187 (228)
Q Consensus       127 ~~~d~~i~~wd~~~~~~~--~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~---------~d~~i~i~d~~~~~  187 (228)
                      .+..+.+.+.|+......  ..+...        ........+.++|++..++++..         ..+.|.++|..+.+
T Consensus       282 ~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~k  361 (426)
T 3c75_H          282 PTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGE  361 (426)
T ss_dssp             EBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCC
T ss_pred             EeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCe
Confidence            334455566665433211  111100        00111123578888887777642         13579999999999


Q ss_pred             eeEEeecCCCCCcEEEEeCCCCc-EEEEec-CCCCEEEeeec
Q 040370          188 KVAKWSSNHIGAPRWIEHSPAEA-AFITCG-TDRSVRFWKEI  227 (228)
Q Consensus       188 ~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~-~dg~i~vwd~~  227 (228)
                      .+.++..+.  ....+.|+|+++ +++++. .++.|.++|+.
T Consensus       362 vv~~I~vg~--~P~gia~spDg~~~lyv~n~~s~~VsVID~~  401 (426)
T 3c75_H          362 RINKIELGH--EIDSINVSQDAEPLLYALSAGTQTLHIYDAA  401 (426)
T ss_dssp             EEEEEEEEE--EECEEEECCSSSCEEEEEETTTTEEEEEETT
T ss_pred             EEEEEECCC--CcCeEEEccCCCEEEEEEcCCCCeEEEEECC
Confidence            998885433  588999999998 888877 59999999963

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.51  E-value=7.8e-12  Score=92.53  Aligned_cols=201  Identities=15%  Similarity=0.150  Sum_probs=129.8

Q ss_pred             EEEEeCCCCEEEEec----------CCCeEEEEEcccceEEeeeccceee---eccceeeEEeCCCCCeEEEEec--CCe
Q 040370           24 SVSFHPSGDFLLAGT----------DHPIAHLYDVNTFQCYLSANVPEIS---VNGAINQVRYSSTGGMYVTASK--DGA   88 (228)
Q Consensus        24 ~~~~~~~~~~l~~~~----------~d~~i~vw~~~~~~~~~~~~~~~~~---~~~~i~~~~~~~~~~~l~~~~~--dg~   88 (228)
                      .++++|++++++++.          .++.|.+||..+.+.........+.   .......+.|+|+|++++.+..  ++.
T Consensus        82 ~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~  161 (386)
T 3sjl_D           82 NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPA  161 (386)
T ss_dssp             EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCE
T ss_pred             cEEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCe
Confidence            399999999988775          3678999999999887766543210   0124677999999999888864  689


Q ss_pred             EEEEeCCCCceeeEEeccc---------------------------ccceeEE----------------EEEC-CCCCEE
Q 040370           89 IRLWDGVSANCVRSIVGAH---------------------------GTAEATS----------------ANFT-KDQRFV  124 (228)
Q Consensus        89 v~iwd~~~~~~~~~~~~~~---------------------------~~~~i~~----------------~~~~-~~~~~l  124 (228)
                      |.++|+.+++.+.++....                           ....+..                ..|. ++|+++
T Consensus       162 VsVID~~t~~vv~tI~v~g~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~  241 (386)
T 3sjl_D          162 VGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLV  241 (386)
T ss_dssp             EEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEE
T ss_pred             EEEEECCCCcEEEEEECCCcceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEE
Confidence            9999999988777664311                           0001100                0111 233222


Q ss_pred             EEeeCCCeEEEEEccCCe--eEEEEe--------cceeeeeeeEEEECCCCcEEEEeeC---------CCCeEEEEEcCC
Q 040370          125 LSCGKDSTVKLWEVSSGR--LVKQYL--------GATHTQLRFQAVFNDTEEFVLSIDE---------PSNEIVIWDALT  185 (228)
Q Consensus       125 ~~~~~d~~i~~wd~~~~~--~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~---------~d~~i~i~d~~~  185 (228)
                      + .+.+|.|++.|+.+..  ....+.        ..........+.+++++..+++...         ..+.|.++|.++
T Consensus       242 ~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t  320 (386)
T 3sjl_D          242 W-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKT  320 (386)
T ss_dssp             E-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTT
T ss_pred             E-EeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCC
Confidence            2 3345666666664432  222221        0001222234666788887777542         125799999999


Q ss_pred             cceeEEeecCCCCCcEEEEeCCCCc-EEEE-ecCCCCEEEeeec
Q 040370          186 AEKVAKWSSNHIGAPRWIEHSPAEA-AFIT-CGTDRSVRFWKEI  227 (228)
Q Consensus       186 ~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s-~~~dg~i~vwd~~  227 (228)
                      ++.+..+..++  .+.+++++|+++ +|++ ...++.|.++|..
T Consensus       321 ~kv~~~i~vg~--~~~~lavs~D~~~~ly~tn~~~~~VsViD~~  362 (386)
T 3sjl_D          321 GERLAKFEMGH--EIDSINVSQDEKPLLYALSTGDKTLYIHDAE  362 (386)
T ss_dssp             CCEEEEEEEEE--EECEEEECSSSSCEEEEEETTTTEEEEEETT
T ss_pred             CeEEEEEECCC--CcceEEECCCCCeEEEEEcCCCCeEEEEECC
Confidence            99999885543  688999999986 6655 4568999999863

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.50  E-value=5.3e-12  Score=93.11  Aligned_cols=201  Identities=9%  Similarity=0.076  Sum_probs=128.0

Q ss_pred             cCcceEEEEEeCCCCEEEEecC-----CCeEEEEEcccceEEeeeccce--eeeccceeeEEeCCCCCe-EEEEe---cC
Q 040370           18 DTHNVRSVSFHPSGDFLLAGTD-----HPIAHLYDVNTFQCYLSANVPE--ISVNGAINQVRYSSTGGM-YVTAS---KD   86 (228)
Q Consensus        18 ~~~~v~~~~~~~~~~~l~~~~~-----d~~i~vw~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~-l~~~~---~d   86 (228)
                      +-..+..++++++++++++-..     ++.|.+||+.+++....+..+.  ..+...+..++++|++.. +++-.   .+
T Consensus        65 ~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~  144 (343)
T 2qe8_A           65 TFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDK  144 (343)
T ss_dssp             CCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGG
T ss_pred             ceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCC
Confidence            4467999999999876665433     5789999999888655544321  111345689999986444 45554   67


Q ss_pred             CeEEEEeCCCCceeeEEecccc---------------------------cceeEEEEECCCCCEEEEeeCCC-eEEEEEc
Q 040370           87 GAIRLWDGVSANCVRSIVGAHG---------------------------TAEATSANFTKDQRFVLSCGKDS-TVKLWEV  138 (228)
Q Consensus        87 g~v~iwd~~~~~~~~~~~~~~~---------------------------~~~i~~~~~~~~~~~l~~~~~d~-~i~~wd~  138 (228)
                      +.|.+||+.+++..+.+..+..                           ...+..++|+|+++.|+.+..++ .+..++.
T Consensus       145 ~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~  224 (343)
T 2qe8_A          145 AALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKS  224 (343)
T ss_dssp             CEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEH
T ss_pred             CeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEH
Confidence            8999999988776554422100                           02358899999999888877665 5555553


Q ss_pred             cC---Ce-----eEEEEecceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCc
Q 040370          139 SS---GR-----LVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEA  210 (228)
Q Consensus       139 ~~---~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~  210 (228)
                      ..   +.     ....+....+......+++++++...++ ...++.|.+||..+++........+...+.+++|.+++.
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va-~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~  303 (343)
T 2qe8_A          225 ADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVG-DLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGY  303 (343)
T ss_dssp             HHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEE-EGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSC
T ss_pred             HHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEE-ccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCc
Confidence            21   10     0000000001223456888888876555 444699999998566543332122345689999999998


Q ss_pred             EEEEecCCC
Q 040370          211 AFITCGTDR  219 (228)
Q Consensus       211 ~l~s~~~dg  219 (228)
                      ++++.+..+
T Consensus       304 l~v~~~~~~  312 (343)
T 2qe8_A          304 LYFDCNQLH  312 (343)
T ss_dssp             EEEEECCGG
T ss_pred             EEEEeCccc
Confidence            888877543

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.49  E-value=5e-11  Score=89.16  Aligned_cols=197  Identities=13%  Similarity=0.110  Sum_probs=135.1

Q ss_pred             CCCCEEEE-ecCCCeEEEEEcccc----eEEeeecccee---eeccceeeEEeCCCCCeEEEEecC------CeEEEEeC
Q 040370           29 PSGDFLLA-GTDHPIAHLYDVNTF----QCYLSANVPEI---SVNGAINQVRYSSTGGMYVTASKD------GAIRLWDG   94 (228)
Q Consensus        29 ~~~~~l~~-~~~d~~i~vw~~~~~----~~~~~~~~~~~---~~~~~i~~~~~~~~~~~l~~~~~d------g~v~iwd~   94 (228)
                      +++++|++ +..++.|.++|+.+.    +........+.   .-......+...|+| .++++..+      |.|.+.|.
T Consensus        93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~  171 (462)
T 2ece_A           93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDH  171 (462)
T ss_dssp             CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECT
T ss_pred             ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEEC
Confidence            77777764 667889999999754    44444320000   001245667888999 77776665      78999999


Q ss_pred             CCCceeeEEeccccc-ceeEEEEECCCCCEEEEee-------------------CCCeEEEEEccCCeeEEEEecceeee
Q 040370           95 VSANCVRSIVGAHGT-AEATSANFTKDQRFVLSCG-------------------KDSTVKLWEVSSGRLVKQYLGATHTQ  154 (228)
Q Consensus        95 ~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~-------------------~d~~i~~wd~~~~~~~~~~~~~~~~~  154 (228)
                      ++++.+..+...... ..-..+.|+|+++.+++..                   .+.+|.+||+.+++.+.++.......
T Consensus       172 ~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~  251 (462)
T 2ece_A          172 YSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENR  251 (462)
T ss_dssp             TTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEE
T ss_pred             CCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCC
Confidence            999999888743212 2234588899999888884                   36899999999988888776532223


Q ss_pred             eeeEE--EECCCCcEEEEeeC-----CCCeEEEEEcCCcceeEE----eec----C-----------CCCCcEEEEeCCC
Q 040370          155 LRFQA--VFNDTEEFVLSIDE-----PSNEIVIWDALTAEKVAK----WSS----N-----------HIGAPRWIEHSPA  208 (228)
Q Consensus       155 ~~~~~--~~~~~~~~~~~~~~-----~d~~i~i~d~~~~~~~~~----~~~----~-----------~~~~v~~~~~~~~  208 (228)
                      ....+  .++|++++.++++.     .+++|.+|....++....    +..    .           -......|.++||
T Consensus       252 ~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~D  331 (462)
T 2ece_A          252 MALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLD  331 (462)
T ss_dssp             EEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTT
T ss_pred             ccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCC
Confidence            33344  45999999999887     788998877654321111    100    0           0245788999999


Q ss_pred             CcEEEEecC-CCCEEEeee
Q 040370          209 EAAFITCGT-DRSVRFWKE  226 (228)
Q Consensus       209 ~~~l~s~~~-dg~i~vwd~  226 (228)
                      +++|..+.. .+.|.+||+
T Consensus       332 GrfLYVSnrg~d~VavfdV  350 (462)
T 2ece_A          332 DKFLYLSLWGIGEVRQYDI  350 (462)
T ss_dssp             SCEEEEEETTTTEEEEEEC
T ss_pred             CCEEEEEeCCCCEEEEEEe
Confidence            998877664 688999986

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.48  E-value=7.2e-15  Score=109.41  Aligned_cols=179  Identities=10%  Similarity=0.001  Sum_probs=99.7

Q ss_pred             CCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCCCceeeEEeccccc
Q 040370           30 SGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGT  109 (228)
Q Consensus        30 ~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~  109 (228)
                      ++..+++++.|+.|+.||..+|+.+.....      +.+.+..+.+++..+++++.||.|+.||.++++.+..+..+. .
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~------~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~-~   80 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE------DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTI-P   80 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEEC------CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCH-H
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecC------CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccC-c
Confidence            678899999999999999999998776653      234444455677788888899999999999988766654321 1


Q ss_pred             ceeE-EEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcce
Q 040370          110 AEAT-SANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEK  188 (228)
Q Consensus       110 ~~i~-~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~  188 (228)
                      ..+. +..+. .+..+++++.|+.++.||.++|+.+..+....      ...++|++..+++++. |+.|+.||.++++.
T Consensus        81 ~~~~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~------~~~~~p~~~~v~~~~~-dg~v~a~d~~tG~~  152 (369)
T 2hz6_A           81 ELVQASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF------ADSLSPSTSLLYLGRT-EYTITMYDTKTREL  152 (369)
T ss_dssp             HHHTTCSCC------CCCCEEEEEEEEECCC----------------------------EEEEEE-EEEEECCCSSSSSC
T ss_pred             cccccCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC------cccccccCCEEEEEec-CCEEEEEECCCCCE
Confidence            1111 01111 34568888899999999999999887765421      1234456777776555 79999999999987


Q ss_pred             eEEeecCCCCCcEEEEeCCCC---cEEEEecCCCCEEEeee
Q 040370          189 VAKWSSNHIGAPRWIEHSPAE---AAFITCGTDRSVRFWKE  226 (228)
Q Consensus       189 ~~~~~~~~~~~v~~~~~~~~~---~~l~s~~~dg~i~vwd~  226 (228)
                      ...+...   ......+.++.   ..+++++.||.|..||.
T Consensus       153 ~W~~~~~---~~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~  190 (369)
T 2hz6_A          153 RWNATYF---DYAASLPEDDVDYKMSHFVSNGDGLVVTVDS  190 (369)
T ss_dssp             CCEEEEE---EECCBCCCCCTTCCCCEEEEETSCEEEEECT
T ss_pred             EEeEecc---cccCccccCCccccceEEEECCCCEEEEEEC
Confidence            6554211   11222333322   45677788899988885

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=99.48  E-value=1.6e-10  Score=80.51  Aligned_cols=193  Identities=13%  Similarity=0.075  Sum_probs=130.6

Q ss_pred             eEEEeecCcce--EEEEEeCCCCEEEEecCCC--eEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEE-ecC
Q 040370           12 AFRVIQDTHNV--RSVSFHPSGDFLLAGTDHP--IAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTA-SKD   86 (228)
Q Consensus        12 ~~~~~~~~~~v--~~~~~~~~~~~l~~~~~d~--~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~d   86 (228)
                      +.+...|...-  ..+.|+ ++.++.+.+.+|  .|+++|+++++........     .........++++.+... -.+
T Consensus        33 vv~~~phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~-----~~~FgeGit~~g~~ly~ltw~~  106 (262)
T 3nol_A           33 IVHSYPHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELG-----KRYFGEGISDWKDKIVGLTWKN  106 (262)
T ss_dssp             EEEEEECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECC-----TTCCEEEEEEETTEEEEEESSS
T ss_pred             EEEEecCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecC-----CccceeEEEEeCCEEEEEEeeC
Confidence            44555676544  889998 666666666665  8999999999987776543     223222222234445544 458


Q ss_pred             CeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeee---eeEEEECC
Q 040370           87 GAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQL---RFQAVFND  163 (228)
Q Consensus        87 g~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~---~~~~~~~~  163 (228)
                      +.+.++|..+.+.+.++....   .-..++  ++++.|+.+..++.|.++|..+.+.+..+........   ...+.+. 
T Consensus       107 ~~v~v~D~~t~~~~~ti~~~~---eG~glt--~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-  180 (262)
T 3nol_A          107 GLGFVWNIRNLRQVRSFNYDG---EGWGLT--HNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-  180 (262)
T ss_dssp             SEEEEEETTTCCEEEEEECSS---CCCCEE--ECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-
T ss_pred             CEEEEEECccCcEEEEEECCC---CceEEe--cCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-
Confidence            899999999999999988742   213333  5677777776678899999999888887764322222   2234454 


Q ss_pred             CCcEEEEeeCCCCeEEEEEcCCcceeEEeecC-----------CCCCcEEEEeCCCCcEEEEecC
Q 040370          164 TEEFVLSIDEPSNEIVIWDALTAEKVAKWSSN-----------HIGAPRWIEHSPAEAAFITCGT  217 (228)
Q Consensus       164 ~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~-----------~~~~v~~~~~~~~~~~l~s~~~  217 (228)
                      ++. +.+....++.|.+.|.++++....+...           ...-.+.|+++|+++.|+..|.
T Consensus       181 ~G~-lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK  244 (262)
T 3nol_A          181 DGE-IFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK  244 (262)
T ss_dssp             TTE-EEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred             CCE-EEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence            454 5565656789999999999998877431           0134688999998776666653

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.47  E-value=1.1e-10  Score=86.97  Aligned_cols=187  Identities=9%  Similarity=-0.081  Sum_probs=122.1

Q ss_pred             EEeCCCCEEEEecC--CC---eEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEe----------cCCeEE
Q 040370           26 SFHPSGDFLLAGTD--HP---IAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTAS----------KDGAIR   90 (228)
Q Consensus        26 ~~~~~~~~l~~~~~--d~---~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~----------~dg~v~   90 (228)
                      ...|+++++++...  ..   .|.++|..+++.+..+...    .. - .++++|++++++.+.          .++.|.
T Consensus        27 ~~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g----~~-p-~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~  100 (373)
T 2mad_H           27 APGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGG----FL-P-NPVAAHSGSEFALASTSFSRIAKGKRTDYVE  100 (373)
T ss_pred             cCCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCC----CC-C-CeEECCCCCEEEEEeccccccccCCCCCeEE
Confidence            34468887777653  22   8899999998876554431    22 2 899999999988886          367899


Q ss_pred             EEeCCCCceeeEEecc-cc----cceeEEEEECCCCCEEEEeeC--CCeEEEEEccCCeeEEE-EecceeeeeeeEEEEC
Q 040370           91 LWDGVSANCVRSIVGA-HG----TAEATSANFTKDQRFVLSCGK--DSTVKLWEVSSGRLVKQ-YLGATHTQLRFQAVFN  162 (228)
Q Consensus        91 iwd~~~~~~~~~~~~~-~~----~~~i~~~~~~~~~~~l~~~~~--d~~i~~wd~~~~~~~~~-~~~~~~~~~~~~~~~~  162 (228)
                      ++|..+.+.+..+... ..    ......+.++||+++|+.+..  ++.|.++| .+++.+.. +...   .   ++.+.
T Consensus       101 viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~---~---~~~~~  173 (373)
T 2mad_H          101 VFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSP---T---CYHIH  173 (373)
T ss_pred             EEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCC---c---eEEEE
Confidence            9999988887776542 00    123457899999999998874  47899999 99888776 5431   1   13344


Q ss_pred             CCCcEEEEeeCCCCeEEEEEcCCcceeEEeec----CCCCCc-EEEEeCCCCcEEEEecCCCCEEEeee
Q 040370          163 DTEEFVLSIDEPSNEIVIWDALTAEKVAKWSS----NHIGAP-RWIEHSPAEAAFITCGTDRSVRFWKE  226 (228)
Q Consensus       163 ~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~----~~~~~v-~~~~~~~~~~~l~s~~~dg~i~vwd~  226 (228)
                      |.+...+.+...||.+.++|. +++.......    ....++ ....+.+++..++..+.++.+.+.|+
T Consensus       174 ~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~  241 (373)
T 2mad_H          174 PGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADI  241 (373)
T ss_pred             eCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEec
Confidence            555444444556899999999 7776633210    111121 22345555444433345666766664

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.47  E-value=5.3e-11  Score=87.78  Aligned_cols=205  Identities=9%  Similarity=0.067  Sum_probs=134.5

Q ss_pred             cceEEEEEeCCCCEEEEec--CCCeEEEEEcccceEEeeecc---ceeeeccceeeEEeCCCCCeEEEEec-----CCeE
Q 040370           20 HNVRSVSFHPSGDFLLAGT--DHPIAHLYDVNTFQCYLSANV---PEISVNGAINQVRYSSTGGMYVTASK-----DGAI   89 (228)
Q Consensus        20 ~~v~~~~~~~~~~~l~~~~--~d~~i~vw~~~~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~~l~~~~~-----dg~v   89 (228)
                      ..+..++++|+|+.+++..  .++.++||.+.+++.. .+..   ....+...+..++++++++++++-..     ++.|
T Consensus        17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~-~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i   95 (343)
T 2qe8_A           17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLI-PFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKL   95 (343)
T ss_dssp             SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEE-ESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEE
T ss_pred             CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCee-cCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeE
Confidence            6899999999999988853  2343556666555432 1110   00111457899999999886665543     5789


Q ss_pred             EEEeCCCCceeeEEeccc----ccceeEEEEECCCCCEE-EEee---CCCeEEEEEccCCeeEEEEecce----------
Q 040370           90 RLWDGVSANCVRSIVGAH----GTAEATSANFTKDQRFV-LSCG---KDSTVKLWEVSSGRLVKQYLGAT----------  151 (228)
Q Consensus        90 ~iwd~~~~~~~~~~~~~~----~~~~i~~~~~~~~~~~l-~~~~---~d~~i~~wd~~~~~~~~~~~~~~----------  151 (228)
                      .+||+.+++.+..+....    ....+..+++++++..+ ++..   .++.|.+||+.+++....+..+.          
T Consensus        96 ~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~  175 (343)
T 2qe8_A           96 VAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLV  175 (343)
T ss_dssp             EEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCE
T ss_pred             EEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCccccccccee
Confidence            999999998777665421    12346889999865444 5544   57899999998877655442210          


Q ss_pred             -----------------eeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCC---cc-----eeE--EeecCCCCCcEEEE
Q 040370          152 -----------------HTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALT---AE-----KVA--KWSSNHIGAPRWIE  204 (228)
Q Consensus       152 -----------------~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~---~~-----~~~--~~~~~~~~~v~~~~  204 (228)
                                       .......++++|+++.++.+......+..++...   +.     ...  .. .++.+....++
T Consensus       176 ~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~g~~g~pdgia  254 (343)
T 2qe8_A          176 IDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIER-YSEKPICDGIS  254 (343)
T ss_dssp             ETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEE-EEECCSCSCEE
T ss_pred             ECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEe-cccCCCCceEE
Confidence                             0012466889999988888776545666665421   11     000  11 13344667899


Q ss_pred             eCCCCcEEEEecCCCCEEEeee
Q 040370          205 HSPAEAAFITCGTDRSVRFWKE  226 (228)
Q Consensus       205 ~~~~~~~l~s~~~dg~i~vwd~  226 (228)
                      ++++|.++++...++.|.+||.
T Consensus       255 ~d~~G~l~va~~~~~~V~~~d~  276 (343)
T 2qe8_A          255 IDKDHNIYVGDLAHSAIGVITS  276 (343)
T ss_dssp             ECTTCCEEEEEGGGTEEEEEET
T ss_pred             ECCCCCEEEEccCCCeEEEEEC
Confidence            9999999999989999999985

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=99.45  E-value=4.1e-11  Score=92.53  Aligned_cols=186  Identities=12%  Similarity=0.122  Sum_probs=137.8

Q ss_pred             CCCEEEEec-CCCeEEEEEcccceEEeeeccceeeeccceeeEEe-C-CCCCeEEEEe------------------cCCe
Q 040370           30 SGDFLLAGT-DHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRY-S-STGGMYVTAS------------------KDGA   88 (228)
Q Consensus        30 ~~~~l~~~~-~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~-~-~~~~~l~~~~------------------~dg~   88 (228)
                      ||+++++.. .++.|.+.|+.+.++......+.   ...+..+++ + |+++++++++                  .++.
T Consensus       100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~---g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~  176 (595)
T 1fwx_A          100 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPN---AKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNV  176 (595)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEEECSS---CCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEE
T ss_pred             CCCEEEEEcCCCCEEEEEECCCceEeeEEeCCC---CCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCce
Confidence            788777654 46689999999999877555443   345778887 5 8999988884                  3468


Q ss_pred             EEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCC-------------------------------------
Q 040370           89 IRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDS-------------------------------------  131 (228)
Q Consensus        89 v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~-------------------------------------  131 (228)
                      +.+.|..+.+...++...   .....++++|+++++++.+.+.                                     
T Consensus       177 vtvID~~t~~v~~qI~Vg---g~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i  253 (595)
T 1fwx_A          177 FTAVDADKWEVAWQVLVS---GNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQEL  253 (595)
T ss_dssp             EEEEETTTTEEEEEEEES---SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEE
T ss_pred             EEEEECCCCeEEEEEEeC---CCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEE
Confidence            999999999888887763   2345678999999998888553                                     


Q ss_pred             -eEEEEEccC--Cee-EEEEecceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcc------------eeEEeecC
Q 040370          132 -TVKLWEVSS--GRL-VKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAE------------KVAKWSSN  195 (228)
Q Consensus       132 -~i~~wd~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~------------~~~~~~~~  195 (228)
                       .|.+.|.++  ++. +..+.   .......+.++|+|+++++++..+..|.++|+.+.+            .....  .
T Consensus       254 ~~V~VID~~~~~~~~~~~~Ip---vg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v--~  328 (595)
T 1fwx_A          254 NGVKVVDGRKEASSLFTRYIP---IANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEP--E  328 (595)
T ss_dssp             TTEEEEECSGGGCCSSEEEEE---EESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECC--B
T ss_pred             CcEEEEeCcccCCceeEEEEe---cCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEc--C
Confidence             366667665  333 33332   233456788999999999999989999999998663            22232  2


Q ss_pred             CCCCcEEEEeCCCCcEEEEecCCCCEEEeee
Q 040370          196 HIGAPRWIEHSPAEAAFITCGTDRSVRFWKE  226 (228)
Q Consensus       196 ~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~  226 (228)
                      -......++|+|+|...++.-.|+.|.+||+
T Consensus       329 vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi  359 (595)
T 1fwx_A          329 LGLGPLHTAFDGRGNAYTSLFLDSQVVKWNI  359 (595)
T ss_dssp             CCSCEEEEEECTTSEEEEEETTTTEEEEEEH
T ss_pred             CCCCcceEEECCCCeEEEEEecCCcEEEEEh
Confidence            3346789999999965666778999999985

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.45  E-value=4.5e-11  Score=88.53  Aligned_cols=188  Identities=9%  Similarity=-0.053  Sum_probs=126.5

Q ss_pred             EEEeCCCCEEEEecC-----CCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEe----------cCCeE
Q 040370           25 VSFHPSGDFLLAGTD-----HPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTAS----------KDGAI   89 (228)
Q Consensus        25 ~~~~~~~~~l~~~~~-----d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~----------~dg~v   89 (228)
                      ....|+++.+++...     ++.|.+.|..+++.+......    ..+ . ++++|+|+++++++          .++.|
T Consensus        38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG----~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~V  111 (386)
T 3sjl_D           38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGG----FLP-N-PVVADDGSFIAHASTVFSRIARGERTDYV  111 (386)
T ss_dssp             CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEEC----SSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEE
T ss_pred             eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECC----CCC-c-EEECCCCCEEEEEcccccccccCCCCCEE
Confidence            345689998887765     679999999999987766542    233 4 99999999888775          36789


Q ss_pred             EEEeCCCCceeeEEecccc-----cceeEEEEECCCCCEEEEeeC--CCeEEEEEccCCeeEEEEecceeeeeeeEEEEC
Q 040370           90 RLWDGVSANCVRSIVGAHG-----TAEATSANFTKDQRFVLSCGK--DSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFN  162 (228)
Q Consensus        90 ~iwd~~~~~~~~~~~~~~~-----~~~i~~~~~~~~~~~l~~~~~--d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~  162 (228)
                      .+||..+.+.+..+.....     ......+.|+|||++++.+..  ++.|.++|+.+++.+.++.....     ...+.
T Consensus       112 sviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~-----~~~~P  186 (386)
T 3sjl_D          112 EVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDC-----YHIFP  186 (386)
T ss_dssp             EEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE-----EEEEE
T ss_pred             EEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCc-----ceeec
Confidence            9999999998888764310     123456899999999888864  68999999999999888854211     11222


Q ss_pred             CCCcEEEEeeCCCCeEEEEEcCC-cceeEEeecCC----CCCcE-EEEeC-CCCcEEEEecCCCCEEEeee
Q 040370          163 DTEEFVLSIDEPSNEIVIWDALT-AEKVAKWSSNH----IGAPR-WIEHS-PAEAAFITCGTDRSVRFWKE  226 (228)
Q Consensus       163 ~~~~~~~~~~~~d~~i~i~d~~~-~~~~~~~~~~~----~~~v~-~~~~~-~~~~~l~s~~~dg~i~vwd~  226 (228)
                      ...+.+++.+. ||.+.+.++.+ ++..... ..+    ..++. ...|. ++|++++ .+.+|.|.+.|+
T Consensus       187 ~g~~~~~~~~~-DG~~~~v~~~~~g~v~~~~-~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~  254 (386)
T 3sjl_D          187 TAPDTFFMHCR-DGSLAKVAFGTEGTPEITH-TEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDL  254 (386)
T ss_dssp             EETTEEEEEET-TSCEEEEECCSSSCCEEEE-CCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEEC
T ss_pred             CCCceeEEECC-CCCEEEEECCCCCeEEEee-cceeccccccccccceeEcCCCcEEE-EeCCCEEEEEEC
Confidence            22333444344 68888888765 4442211 111    11221 23553 6776655 445788888885

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.43  E-value=1.9e-11  Score=90.40  Aligned_cols=198  Identities=9%  Similarity=0.031  Sum_probs=123.7

Q ss_pred             EEEEeCCCCEEEEec----------CCCeEEEEEcccceEEeeeccceee---eccceeeEEeCCCCCeEEEEec--CCe
Q 040370           24 SVSFHPSGDFLLAGT----------DHPIAHLYDVNTFQCYLSANVPEIS---VNGAINQVRYSSTGGMYVTASK--DGA   88 (228)
Q Consensus        24 ~~~~~~~~~~l~~~~----------~d~~i~vw~~~~~~~~~~~~~~~~~---~~~~i~~~~~~~~~~~l~~~~~--dg~   88 (228)
                      .+.++|++++++++.          .++.|.+||+.+++....+......   .......+.++|+|++++++..  +..
T Consensus        69 ~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~  148 (368)
T 1mda_H           69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAA  148 (368)
T ss_dssp             EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCE
T ss_pred             ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCe
Confidence            799999999998876          3688999999999988776543100   0134678999999999998874  467


Q ss_pred             EEE--EeCCCCceeeEEeccc----------------ccceeEEEEE--------------------------CCCCCEE
Q 040370           89 IRL--WDGVSANCVRSIVGAH----------------GTAEATSANF--------------------------TKDQRFV  124 (228)
Q Consensus        89 v~i--wd~~~~~~~~~~~~~~----------------~~~~i~~~~~--------------------------~~~~~~l  124 (228)
                      +.+  +|+.+   +..+....                ....+..+..                          .+++..+
T Consensus       149 v~V~~iD~~t---v~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~~~~~~~~~  225 (368)
T 1mda_H          149 AGLSVPGASD---DQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGML  225 (368)
T ss_dssp             EEEEETTTEE---EEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEE
T ss_pred             EEEEEEchhh---ceEEECCCceEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCccccccCCEE
Confidence            888  99866   22332110                0000000110                          2222333


Q ss_pred             EEeeCCCeEEEEEccCCe--eEEEEecc--------eeeeeeeEEEECCCCcEEEEeeC---C-----CCeEEEEEcCCc
Q 040370          125 LSCGKDSTVKLWEVSSGR--LVKQYLGA--------THTQLRFQAVFNDTEEFVLSIDE---P-----SNEIVIWDALTA  186 (228)
Q Consensus       125 ~~~~~d~~i~~wd~~~~~--~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~---~-----d~~i~i~d~~~~  186 (228)
                      +..+. +.+.+.|+....  .+..+...        ..+.....+.++|+++.++++..   .     ++.+.++|+.+.
T Consensus       226 ~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~  304 (368)
T 1mda_H          226 VWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVG  304 (368)
T ss_dssp             EECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSC
T ss_pred             EEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCC
Confidence            33333 566777765422  22211100        01111112578999988887543   1     235669999999


Q ss_pred             ceeEEeecCCCCCcEEEEeCCCCc-EEEEec-CCCCEEEeeec
Q 040370          187 EKVAKWSSNHIGAPRWIEHSPAEA-AFITCG-TDRSVRFWKEI  227 (228)
Q Consensus       187 ~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~-~dg~i~vwd~~  227 (228)
                      +.+..+..+.  ....++|+|+++ ++++.. .++.|.++|+.
T Consensus       305 ~vv~~i~vg~--~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~  345 (368)
T 1mda_H          305 QTSGPISNGH--DSDAIIAAQDGASDNYANSAGTEVLDIYDAA  345 (368)
T ss_dssp             CEEECCEEEE--EECEEEECCSSSCEEEEEETTTTEEEEEESS
T ss_pred             eEEEEEECCC--CcceEEECCCCCEEEEEccCCCCeEEEEECC
Confidence            9888875433  688999999997 566666 59999999963

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.42  E-value=4e-11  Score=90.20  Aligned_cols=186  Identities=9%  Similarity=-0.045  Sum_probs=123.9

Q ss_pred             CCCCEEEEecCC-----CeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEe----------cCCeEEEEe
Q 040370           29 PSGDFLLAGTDH-----PIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTAS----------KDGAIRLWD   93 (228)
Q Consensus        29 ~~~~~l~~~~~d-----~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~----------~dg~v~iwd   93 (228)
                      |+++.+++....     +.|.++|..+++.+..+...    ..+  .+.++|++++++.+.          .++.|.++|
T Consensus        82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG----~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD  155 (426)
T 3c75_H           82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGG----FLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFD  155 (426)
T ss_dssp             CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEEC----SSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECC----CCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEE
Confidence            466766665442     69999999999988777643    233  899999999888776          467899999


Q ss_pred             CCCCceeeEEecc-cc----cceeEEEEECCCCCEEEEeeC--CCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCc
Q 040370           94 GVSANCVRSIVGA-HG----TAEATSANFTKDQRFVLSCGK--DSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEE  166 (228)
Q Consensus        94 ~~~~~~~~~~~~~-~~----~~~i~~~~~~~~~~~l~~~~~--d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (228)
                      ..+++.+..+... ..    ......+.++||+++++.+..  ++.|.+.|+.+++.+.++.....      ....|++.
T Consensus       156 ~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~------~~~~p~g~  229 (426)
T 3c75_H          156 PVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC------YHIFPASP  229 (426)
T ss_dssp             TTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE------EEEEEEET
T ss_pred             CCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc------eeeccCCC
Confidence            9999988887642 00    123456889999999998874  57899999999998888764211      12223332


Q ss_pred             EEEEeeCCCCeEEEEEcCCcceeEEe---ecCCCCC-cEEEEeCCCCcEEEEecCCCCEEEeee
Q 040370          167 FVLSIDEPSNEIVIWDALTAEKVAKW---SSNHIGA-PRWIEHSPAEAAFITCGTDRSVRFWKE  226 (228)
Q Consensus       167 ~~~~~~~~d~~i~i~d~~~~~~~~~~---~~~~~~~-v~~~~~~~~~~~l~s~~~dg~i~vwd~  226 (228)
                      ..+.+...||.+.+.+..+++.....   ......+ ...+.+.+++..++..+..+.|.+.|+
T Consensus       230 ~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~  293 (426)
T 3c75_H          230 TVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADL  293 (426)
T ss_dssp             TEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEE
T ss_pred             cEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEec
Confidence            22222333677777777555444221   0111112 123567888877766677788888775

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=99.41  E-value=8.4e-10  Score=76.25  Aligned_cols=194  Identities=10%  Similarity=0.005  Sum_probs=128.1

Q ss_pred             eeEEEeecCc--ceEEEEEeCCCCEEEEecCC--CeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecC
Q 040370           11 RAFRVIQDTH--NVRSVSFHPSGDFLLAGTDH--PIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKD   86 (228)
Q Consensus        11 ~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~d--~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d   86 (228)
                      ++++...|..  -...+.|++ +.++.+.+.+  ..|+++|+++++...........   .-..++.. .++.....-.+
T Consensus        10 ~v~~~~phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~---fgeGi~~~-~~~ly~ltw~~   84 (243)
T 3mbr_X           10 RVVKRYPHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPY---FGAGIVAW-RDRLIQLTWRN   84 (243)
T ss_dssp             EEEEEEECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTC---CEEEEEEE-TTEEEEEESSS
T ss_pred             EEEEEcCCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCc---ceeEEEEe-CCEEEEEEeeC
Confidence            4455556754  466999986 5555555554  48999999999988776553211   11223333 23344445568


Q ss_pred             CeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeee---eeEEEECC
Q 040370           87 GAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQL---RFQAVFND  163 (228)
Q Consensus        87 g~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~---~~~~~~~~  163 (228)
                      +.+.++|.++.+.+.++....   .-..++  ++++.|+.+..++.|.++|..+.+.+.++....+...   ...+.+. 
T Consensus        85 ~~v~v~D~~tl~~~~ti~~~~---~Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-  158 (243)
T 3mbr_X           85 HEGFVYDLATLTPRARFRYPG---EGWALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-  158 (243)
T ss_dssp             SEEEEEETTTTEEEEEEECSS---CCCEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-
T ss_pred             CEEEEEECCcCcEEEEEeCCC---CceEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-
Confidence            999999999999999988742   223444  4567777777788999999999988887764322222   2233433 


Q ss_pred             CCcEEEEeeCCCCeEEEEEcCCcceeEEeecC------------CCCCcEEEEeCCCCcEEEEec
Q 040370          164 TEEFVLSIDEPSNEIVIWDALTAEKVAKWSSN------------HIGAPRWIEHSPAEAAFITCG  216 (228)
Q Consensus       164 ~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~------------~~~~v~~~~~~~~~~~l~s~~  216 (228)
                      ++. +++....+..|.+.|.++++.+..+...            ...-.+.|+++|+++.|+..|
T Consensus       159 ~G~-lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG  222 (243)
T 3mbr_X          159 NGE-LLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG  222 (243)
T ss_dssp             TTE-EEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred             CCE-EEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence            444 5555545689999999999988877421            113468899999766655554

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=99.40  E-value=1.4e-09  Score=75.88  Aligned_cols=190  Identities=14%  Similarity=0.110  Sum_probs=130.1

Q ss_pred             eEEEeecCcc--eEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccce--eeEEeCCCCCeEEEEecCC
Q 040370           12 AFRVIQDTHN--VRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAI--NQVRYSSTGGMYVTASKDG   87 (228)
Q Consensus        12 ~~~~~~~~~~--v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i--~~~~~~~~~~~l~~~~~dg   87 (228)
                      +.+...|...  ...+.|+ ++.++.+.+.+|.|+++|+++++.+... ..     ...  ..+++.. ++.....-.++
T Consensus        45 Vv~~~phd~~~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~-----~~~FgeGit~~g-~~Ly~ltw~~~  116 (268)
T 3nok_A           45 IIREYPHATNAFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RL-----GNIFAEGLASDG-ERLYQLTWTEG  116 (268)
T ss_dssp             EEEEEECCTTCCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-EC-----TTCCEEEEEECS-SCEEEEESSSC
T ss_pred             EEEEEcCCCccccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CC-----CCcceeEEEEeC-CEEEEEEccCC
Confidence            4455566544  4789997 4566677888899999999999877665 32     222  2355542 34444455689


Q ss_pred             eEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeee---eeEEEECCC
Q 040370           88 AIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQL---RFQAVFNDT  164 (228)
Q Consensus        88 ~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~---~~~~~~~~~  164 (228)
                      .+.++|.++.+.+.++....   .-..++  ++++.|+.+..++.|.++|..+.+.+.++........   ...+.+. +
T Consensus       117 ~v~V~D~~Tl~~~~ti~~~~---eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-d  190 (268)
T 3nok_A          117 LLFTWSGMPPQRERTTRYSG---EGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-N  190 (268)
T ss_dssp             EEEEEETTTTEEEEEEECSS---CCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-T
T ss_pred             EEEEEECCcCcEEEEEeCCC---ceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-C
Confidence            99999999999999988642   223444  4677787777789999999999988887764332222   2334454 5


Q ss_pred             CcEEEEeeCCCCeEEEEEcCCcceeEEeecC------------CCCCcEEEEeCCCCcEEEEec
Q 040370          165 EEFVLSIDEPSNEIVIWDALTAEKVAKWSSN------------HIGAPRWIEHSPAEAAFITCG  216 (228)
Q Consensus       165 ~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~------------~~~~v~~~~~~~~~~~l~s~~  216 (228)
                      + .+++....++.|.+.|.++++.+..+...            -..-.+.|+++|+++.|+..|
T Consensus       191 G-~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG  253 (268)
T 3nok_A          191 G-VIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG  253 (268)
T ss_dssp             T-EEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred             C-EEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence            5 45565655789999999999988877421            123568899999765555444

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=99.38  E-value=4.3e-11  Score=92.41  Aligned_cols=185  Identities=12%  Similarity=0.159  Sum_probs=131.7

Q ss_pred             CcceEEEEE-e-CCCCEEEEec------------------CCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCC
Q 040370           19 THNVRSVSF-H-PSGDFLLAGT------------------DHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGG   78 (228)
Q Consensus        19 ~~~v~~~~~-~-~~~~~l~~~~------------------~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~   78 (228)
                      ......+++ + |+++++++++                  .++.+.+.|.++.+........     +....++++|+|+
T Consensus       133 g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~Vg-----g~pd~~~~spdGk  207 (595)
T 1fwx_A          133 AKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVS-----GNLDNCDADYEGK  207 (595)
T ss_dssp             CCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEEES-----SCCCCEEECSSSS
T ss_pred             CCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEEECCCCeEEEEEEeC-----CCccceEECCCCC
Confidence            356788888 5 8999998884                  3468999999998877666542     3456788999999


Q ss_pred             eEEEEecCC--------------------------------------eEEEEeCCC--Cce-eeEEecccccceeEEEEE
Q 040370           79 MYVTASKDG--------------------------------------AIRLWDGVS--ANC-VRSIVGAHGTAEATSANF  117 (228)
Q Consensus        79 ~l~~~~~dg--------------------------------------~v~iwd~~~--~~~-~~~~~~~~~~~~i~~~~~  117 (228)
                      ++++.+.+.                                      .|.+.|.++  ++. +..+..   .....++.+
T Consensus       208 ~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipv---g~~PhGv~~  284 (595)
T 1fwx_A          208 WAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPI---ANNPHGCNM  284 (595)
T ss_dssp             EEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEE---ESSCCCEEE
T ss_pred             EEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEec---CCCceEEEE
Confidence            988887543                                      467777776  444 445544   335578999


Q ss_pred             CCCCCEEEEee-CCCeEEEEEccCCe------------eEEEEecceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcC
Q 040370          118 TKDQRFVLSCG-KDSTVKLWEVSSGR------------LVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDAL  184 (228)
Q Consensus       118 ~~~~~~l~~~~-~d~~i~~wd~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~  184 (228)
                      +|||+++++++ .+.+|.++|+.+.+            ......   .......+.|+|+| +++++..-|++|.+||+.
T Consensus       285 sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~---vG~gP~h~aF~~dG-~aY~t~~ldsqV~kwdi~  360 (595)
T 1fwx_A          285 APDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE---LGLGPLHTAFDGRG-NAYTSLFLDSQVVKWNIE  360 (595)
T ss_dssp             CTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB---CCSCEEEEEECTTS-EEEEEETTTTEEEEEEHH
T ss_pred             cCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC---CCCCcceEEECCCC-eEEEEEecCCcEEEEEhh
Confidence            99999876655 67889999998653            222222   23456788999999 888888889999999997


Q ss_pred             C----------cceeEEeecCCCCC-----cEEEEeCCCCcEEEEec
Q 040370          185 T----------AEKVAKWSSNHIGA-----PRWIEHSPAEAAFITCG  216 (228)
Q Consensus       185 ~----------~~~~~~~~~~~~~~-----v~~~~~~~~~~~l~s~~  216 (228)
                      +          .+.+.++ ..|..+     -..+.++|||++|+++.
T Consensus       361 ~a~~~~~g~~~~~vi~ki-dV~yqpGh~~~~~g~t~~~DGk~l~~~N  406 (595)
T 1fwx_A          361 DAIRAYAGEKVDPIKDKL-DVHYQPGHLKTVMGETLDATNDWLVCLS  406 (595)
T ss_dssp             HHHHHHHTCSCCCEEEEE-ECSSCEEEEEETTTTSTTCCSSEEEEEE
T ss_pred             HhhhhhcccccceeEEEe-ecccccccceeccceEeCCCCCEEEEcC
Confidence            7          3445555 333332     22345689999998875

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.34  E-value=1e-10  Score=94.07  Aligned_cols=194  Identities=7%  Similarity=0.030  Sum_probs=121.0

Q ss_pred             EEEEEeCCCCEEEEecCCC-------------eEEEEEcccceE--EeeeccceeeeccceeeEEeCCCCCeEEEEec--
Q 040370           23 RSVSFHPSGDFLLAGTDHP-------------IAHLYDVNTFQC--YLSANVPEISVNGAINQVRYSSTGGMYVTASK--   85 (228)
Q Consensus        23 ~~~~~~~~~~~l~~~~~d~-------------~i~vw~~~~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--   85 (228)
                      ..++|+ |++.|+.++.+.             .|++|++.++..  ....... ..+......+.|+|+|++|+....  
T Consensus       178 ~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~-~~~~~~~~~~~~SpDg~~l~~~~~~~  255 (693)
T 3iuj_A          178 SGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAI-PAQHHRYVGATVTEDDRFLLISAANS  255 (693)
T ss_dssp             CCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCS-GGGCCSEEEEEECTTSCEEEEEEESS
T ss_pred             ccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecC-CCCCeEEEEEEEcCCCCEEEEEEccC
Confidence            578899 999998887663             499999876542  1111111 001234678899999998765432  


Q ss_pred             --CCeEEEEeCCCCc-eeeEEecccccceeEEEEECCCCCEEE-EeeCC---CeEEEEEccCCee--EEEEecceeeeee
Q 040370           86 --DGAIRLWDGVSAN-CVRSIVGAHGTAEATSANFTKDQRFVL-SCGKD---STVKLWEVSSGRL--VKQYLGATHTQLR  156 (228)
Q Consensus        86 --dg~v~iwd~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~d---~~i~~wd~~~~~~--~~~~~~~~~~~~~  156 (228)
                        +..|.++|+.++. ....+..+  ....... +++++..|+ ....+   +.|..+|+.++..  ...+..+  ....
T Consensus       256 ~~~~~i~~~d~~~~~~~~~~l~~~--~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~--~~~~  330 (693)
T 3iuj_A          256 TSGNRLYVKDLSQENAPLLTVQGD--LDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPE--RQQV  330 (693)
T ss_dssp             SSCCEEEEEETTSTTCCCEEEECS--SSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECC--CSSC
T ss_pred             CCCcEEEEEECCCCCCceEEEeCC--CCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecC--CCCE
Confidence              2589999998764 34455443  2233333 556565554 44333   5799999987654  2344432  2222


Q ss_pred             eEEEECCCCcEEEEeeCCCC--eEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCC----CCEEEeee
Q 040370          157 FQAVFNDTEEFVLSIDEPSN--EIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTD----RSVRFWKE  226 (228)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~d~--~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d----g~i~vwd~  226 (228)
                      .  .+++++..++.....++  .|++||+..+ ....+.....+.+..+.++|+++.|+....+    +.+..||+
T Consensus       331 ~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~-~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~  403 (693)
T 3iuj_A          331 L--TVHSGSGYLFAEYMVDATARVEQFDYEGK-RVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEP  403 (693)
T ss_dssp             E--EEEEETTEEEEEEEETTEEEEEEECTTSC-EEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECT
T ss_pred             E--EEEEECCEEEEEEEECCeeEEEEEECCCC-eeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEEC
Confidence            2  77888888887766555  6888998744 4444433455667788888888766654433    66777764

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.30  E-value=6.8e-10  Score=88.90  Aligned_cols=188  Identities=11%  Similarity=0.054  Sum_probs=127.1

Q ss_pred             EEEEEeCCCCEEEEecCCC-------------------eEEEEEcccceEEeeeccceee-----eccceeeEEeCCCC-
Q 040370           23 RSVSFHPSGDFLLAGTDHP-------------------IAHLYDVNTFQCYLSANVPEIS-----VNGAINQVRYSSTG-   77 (228)
Q Consensus        23 ~~~~~~~~~~~l~~~~~d~-------------------~i~vw~~~~~~~~~~~~~~~~~-----~~~~i~~~~~~~~~-   77 (228)
                      ..++++|++..++.++.++                   .|..+|.++|+.+..++.....     .......+....+| 
T Consensus       246 ~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~  325 (677)
T 1kb0_A          246 DSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGK  325 (677)
T ss_dssp             SCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTE
T ss_pred             cceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCc
Confidence            3578899888888887664                   5999999999988776542110     01112222333466 


Q ss_pred             --CeEEEEecCCeEEEEeCCCCceeeEEecccc---------ccee------------------------EEEEECCCCC
Q 040370           78 --GMYVTASKDGAIRLWDGVSANCVRSIVGAHG---------TAEA------------------------TSANFTKDQR  122 (228)
Q Consensus        78 --~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~---------~~~i------------------------~~~~~~~~~~  122 (228)
                        ..++.++.+|.++++|.++++.+..+.....         ..++                        ..++++|+..
T Consensus       326 ~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~  405 (677)
T 1kb0_A          326 PRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTG  405 (677)
T ss_dssp             EEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTT
T ss_pred             EeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCC
Confidence              6789999999999999999998776653210         0111                        1467888888


Q ss_pred             EEEEeeC-------------------------------------------CCeEEEEEccCCeeEEEEecceeeeeeeEE
Q 040370          123 FVLSCGK-------------------------------------------DSTVKLWEVSSGRLVKQYLGATHTQLRFQA  159 (228)
Q Consensus       123 ~l~~~~~-------------------------------------------d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~  159 (228)
                      ++++...                                           .+.|..||+.+++.+-.+...   ......
T Consensus       406 ~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~---~~~~~g  482 (677)
T 1kb0_A          406 LVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHV---SPWNGG  482 (677)
T ss_dssp             EEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEES---SSCCCC
T ss_pred             EEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCCC---CCCcCc
Confidence            8777543                                           278999999999988777532   222223


Q ss_pred             EECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEE
Q 040370          160 VFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFIT  214 (228)
Q Consensus       160 ~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s  214 (228)
                      .+...+..++.+ ..|+.+++||.++++.+..+..++.....-+.+.++|+.++.
T Consensus       483 ~~~~~g~~v~~g-~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~y~~~G~~~v~  536 (677)
T 1kb0_A          483 TLTTAGNVVFQG-TADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYVS  536 (677)
T ss_dssp             EEEETTTEEEEE-CTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred             ceEeCCCEEEEE-CCCCcEEEEECCCCceeeeeeCCCCcccCCEEEEeCCEEEEE
Confidence            344556667765 558999999999999999886555444445666677765443

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.28  E-value=1.9e-12  Score=96.43  Aligned_cols=174  Identities=8%  Similarity=-0.000  Sum_probs=89.3

Q ss_pred             cceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceee-EEeCCCCCeEEEEecCCeEEEEeCCCCc
Q 040370           20 HNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQ-VRYSSTGGMYVTASKDGAIRLWDGVSAN   98 (228)
Q Consensus        20 ~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~l~~~~~dg~v~iwd~~~~~   98 (228)
                      .++.+..+.+++..+++++.|+.|+.||.++++.+.......   ...+.+ ..+. .+..+++++.|+.++.||.++|+
T Consensus        38 ~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~---~~~~~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~  113 (369)
T 2hz6_A           38 DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTI---PELVQASPCRS-SDGILYMGKKQDIWYVIDLLTGE  113 (369)
T ss_dssp             CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCH---HHHHTTCSCC------CCCCEEEEEEEEECCC---
T ss_pred             CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccC---ccccccCceEe-cCCEEEEEeCCCEEEEEECCCCc
Confidence            445555555677788888899999999999887654443221   111111 1111 34567888889999999999999


Q ss_pred             eeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCC---cEEEEeeCCC
Q 040370           99 CVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTE---EFVLSIDEPS  175 (228)
Q Consensus        99 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~d  175 (228)
                      .+..+..+.      ...++|++..+++++.|+.|+.||.++++.+..+....    .....+.++.   ..+++++. |
T Consensus       114 ~~w~~~~~~------~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~----~~~~~~~~~~~~~~~v~~~~~-d  182 (369)
T 2hz6_A          114 KQQTLSSAF------ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYFD----YAASLPEDDVDYKMSHFVSNG-D  182 (369)
T ss_dssp             -------------------------EEEEEEEEEEECCCSSSSSCCCEEEEEE----ECCBCCCCCTTCCCCEEEEET-S
T ss_pred             EEEEecCCC------cccccccCCEEEEEecCCEEEEEECCCCCEEEeEeccc----ccCccccCCccccceEEEECC-C
Confidence            887765532      13456688889999999999999999998776654321    1222233321   44555444 7


Q ss_pred             CeEEEEEcCCcceeEEeecCCCCCcEE-EEeCCCCc
Q 040370          176 NEIVIWDALTAEKVAKWSSNHIGAPRW-IEHSPAEA  210 (228)
Q Consensus       176 ~~i~i~d~~~~~~~~~~~~~~~~~v~~-~~~~~~~~  210 (228)
                      |.++.||.++++.+-...  ...++.. ..+++++.
T Consensus       183 g~v~a~d~~tG~~~W~~~--~~~pv~~~~~~~~dg~  216 (369)
T 2hz6_A          183 GLVVTVDSESGDVLWIQN--YASPVVAFYVWQREGL  216 (369)
T ss_dssp             CEEEEECTTTCCEEEEEE--CSSCEEEEEECTTSSC
T ss_pred             CEEEEEECCCCcEEEEec--CCCceEEEEEecCCce
Confidence            999999999999877663  3444443 34444553

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=99.27  E-value=3.9e-08  Score=71.25  Aligned_cols=197  Identities=8%  Similarity=-0.013  Sum_probs=122.5

Q ss_pred             CcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecC--CeEEEEeCCC
Q 040370           19 THNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKD--GAIRLWDGVS   96 (228)
Q Consensus        19 ~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d--g~v~iwd~~~   96 (228)
                      ......++|+++++++++-..++.|..+|.+... ......     ...+..+++.++++++++....  ..|..+|..+
T Consensus        31 ~~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~-~~~~~~-----~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~  104 (306)
T 2p4o_A           31 NTFLENLASAPDGTIFVTNHEVGEIVSITPDGNQ-QIHATV-----EGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSD  104 (306)
T ss_dssp             TCCEEEEEECTTSCEEEEETTTTEEEEECTTCCE-EEEEEC-----SSEEEEEEECTTSCEEEEEECTTSCEEEEEECTT
T ss_pred             CCCcceEEECCCCCEEEEeCCCCeEEEECCCCce-EEEEeC-----CCCceeEEEcCCCcEEEEeccCCcceEEEEcCCC
Confidence            3668899999999877777788999999877532 222221     3467889999999866555332  2477777777


Q ss_pred             CceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCee-EEEEec-------ceeeeeeeEEEECCCCcEE
Q 040370           97 ANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRL-VKQYLG-------ATHTQLRFQAVFNDTEEFV  168 (228)
Q Consensus        97 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~-~~~~~~-------~~~~~~~~~~~~~~~~~~~  168 (228)
                      ++......... ......++..+++..+++-..++.|+++|...++. +.....       .........+  ++++.++
T Consensus       105 g~~~~~~~~~~-~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~l  181 (306)
T 2p4o_A          105 GTVETLLTLPD-AIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFL  181 (306)
T ss_dssp             SCEEEEEECTT-CSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEE
T ss_pred             CeEEEEEeCCC-ccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEE
Confidence            76543332211 22334555555555555555688999999875431 211100       0000111223  6778888


Q ss_pred             EEeeCCCCeEEEEEcCC-cce--eEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeee
Q 040370          169 LSIDEPSNEIVIWDALT-AEK--VAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKE  226 (228)
Q Consensus       169 ~~~~~~d~~i~i~d~~~-~~~--~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~  226 (228)
                      +++....+.|..+|+.. ++.  ...+..  ......++++++|+++++....+.|.+++.
T Consensus       182 yv~d~~~~~I~~~~~~~~g~~~~~~~~~~--~~~P~gi~vd~dG~l~va~~~~~~V~~~~~  240 (306)
T 2p4o_A          182 YVSNTEKMLLLRIPVDSTDKPGEPEIFVE--QTNIDDFAFDVEGNLYGATHIYNSVVRIAP  240 (306)
T ss_dssp             EEEETTTTEEEEEEBCTTSCBCCCEEEEE--SCCCSSEEEBTTCCEEEECBTTCCEEEECT
T ss_pred             EEEeCCCCEEEEEEeCCCCCCCccEEEec--cCCCCCeEECCCCCEEEEeCCCCeEEEECC
Confidence            88887779999999864 321  111111  134667899999988777777788888763

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.26  E-value=5e-08  Score=69.22  Aligned_cols=196  Identities=8%  Similarity=-0.012  Sum_probs=123.4

Q ss_pred             cceEEEEEeCCCCEEE-EecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEE-EEecCCeEEEEeCCCC
Q 040370           20 HNVRSVSFHPSGDFLL-AGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYV-TASKDGAIRLWDGVSA   97 (228)
Q Consensus        20 ~~v~~~~~~~~~~~l~-~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~dg~v~iwd~~~~   97 (228)
                      ..+..++|+|++..|+ +-..++.|.++++............    ......++++|++..++ +-...+.|.++++...
T Consensus        36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~----~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~  111 (267)
T 1npe_A           36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQD----LGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGT  111 (267)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTT----CCCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECC----CCCccEEEEEecCCeEEEEECCCCEEEEEEcCCC
Confidence            4578999999665555 5556789999998765432222111    24578899998655444 5556789999998643


Q ss_pred             ceeeEEecccccceeEEEEECCCCCEEEEeeC---CCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCC
Q 040370           98 NCVRSIVGAHGTAEATSANFTKDQRFVLSCGK---DSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEP  174 (228)
Q Consensus        98 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (228)
                      .. ..+.... ......++++|++..|+.+..   .+.|..+++.. +....+... .......+++++++..++.+...
T Consensus       112 ~~-~~~~~~~-~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg-~~~~~~~~~-~~~~P~gia~d~~~~~lyv~d~~  187 (267)
T 1npe_A          112 QR-RVLFDTG-LVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDG-TNRRILAQD-NLGLPNGLTFDAFSSQLCWVDAG  187 (267)
T ss_dssp             SC-EEEECSS-CSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTS-CCCEEEECT-TCSCEEEEEEETTTTEEEEEETT
T ss_pred             CE-EEEEECC-CCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCC-CCcEEEEEC-CCCCCcEEEEcCCCCEEEEEECC
Confidence            32 2222211 245688999997666655543   36888888754 333333211 22345678899988888887777


Q ss_pred             CCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeee
Q 040370          175 SNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKE  226 (228)
Q Consensus       175 d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~  226 (228)
                      .+.|.++|.......... .. ......++.. .+.++++....+.|..+|.
T Consensus       188 ~~~I~~~~~~g~~~~~~~-~~-~~~P~gi~~d-~~~lyva~~~~~~v~~~d~  236 (267)
T 1npe_A          188 THRAECLNPAQPGRRKVL-EG-LQYPFAVTSY-GKNLYYTDWKTNSVIAMDL  236 (267)
T ss_dssp             TTEEEEEETTEEEEEEEE-EC-CCSEEEEEEE-TTEEEEEETTTTEEEEEET
T ss_pred             CCEEEEEecCCCceEEEe-cC-CCCceEEEEe-CCEEEEEECCCCeEEEEeC
Confidence            799999998754433332 22 2344667664 4555555556678888775

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.26  E-value=1.6e-09  Score=86.90  Aligned_cols=186  Identities=11%  Similarity=0.103  Sum_probs=123.0

Q ss_pred             EEEEeCCCCEEEEecCCCe-------------------EEEEEcccceEEeeeccceee-----eccceeeEEeCCCCC-
Q 040370           24 SVSFHPSGDFLLAGTDHPI-------------------AHLYDVNTFQCYLSANVPEIS-----VNGAINQVRYSSTGG-   78 (228)
Q Consensus        24 ~~~~~~~~~~l~~~~~d~~-------------------i~vw~~~~~~~~~~~~~~~~~-----~~~~i~~~~~~~~~~-   78 (228)
                      .++++|+...++.++.++.                   |..+|.++|+.+..++.....     ....+.......+|+ 
T Consensus       239 ~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~  318 (689)
T 1yiq_A          239 SFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKP  318 (689)
T ss_dssp             CEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEE
T ss_pred             ceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcE
Confidence            5788998889998887764                   999999999988776542100     011122222222554 


Q ss_pred             --eEEEEecCCeEEEEeCCCCceeeEEecccc--------------------------c-----------ceeEEEEECC
Q 040370           79 --MYVTASKDGAIRLWDGVSANCVRSIVGAHG--------------------------T-----------AEATSANFTK  119 (228)
Q Consensus        79 --~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~--------------------------~-----------~~i~~~~~~~  119 (228)
                        .++.++.+|.++++|.++++.+........                          .           ..-..++++|
T Consensus       319 ~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp  398 (689)
T 1yiq_A          319 RKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNP  398 (689)
T ss_dssp             EEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEET
T ss_pred             EEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECC
Confidence              788999999999999999998744332110                          0           0011267888


Q ss_pred             CCCEEEEeeC---------------------------------------------CCeEEEEEccCCeeEEEEecceeee
Q 040370          120 DQRFVLSCGK---------------------------------------------DSTVKLWEVSSGRLVKQYLGATHTQ  154 (228)
Q Consensus       120 ~~~~l~~~~~---------------------------------------------d~~i~~wd~~~~~~~~~~~~~~~~~  154 (228)
                      +..++++...                                             +|.|+.||+.+++.+-.+....   
T Consensus       399 ~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~---  475 (689)
T 1yiq_A          399 DTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVT---  475 (689)
T ss_dssp             TTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESS---
T ss_pred             CCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCC---
Confidence            8777776532                                             3779999999999887775422   


Q ss_pred             eeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEE
Q 040370          155 LRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFI  213 (228)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  213 (228)
                      ......+...+..++.+ +.|+.++.||.++|+.+.++..++.....-+.|..+|+..+
T Consensus       476 ~~~~g~~~tagglvf~g-t~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qyv  533 (689)
T 1yiq_A          476 IFNGGTLSTAGNLVFEG-SADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQYV  533 (689)
T ss_dssp             SCCCCEEEETTTEEEEE-CTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred             CccCccceECCCEEEEE-CCCCcEEEEECCCCccceeeeCCCCcccCceEEEECCEEEE
Confidence            11222334456666665 45899999999999999888545444344466777777443

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.22  E-value=2.1e-09  Score=86.34  Aligned_cols=186  Identities=12%  Similarity=0.076  Sum_probs=124.0

Q ss_pred             CCeEEEEEcccceEEeeecccee---------------------------eeccceeeEEeCCCCCeEEEEecCCe----
Q 040370           40 HPIAHLYDVNTFQCYLSANVPEI---------------------------SVNGAINQVRYSSTGGMYVTASKDGA----   88 (228)
Q Consensus        40 d~~i~vw~~~~~~~~~~~~~~~~---------------------------~~~~~i~~~~~~~~~~~l~~~~~dg~----   88 (228)
                      ++.|..+|.++|+.+........                           .....-..+.++|+...++.+..++.    
T Consensus       182 ~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~  261 (689)
T 1yiq_A          182 RGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDP  261 (689)
T ss_dssp             BCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCH
T ss_pred             CCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCcccc
Confidence            68999999999998766542110                           00111236788888888999888764    


Q ss_pred             ---------------EEEEeCCCCceeeEEeccccc-------ceeEEEEECCCCC---EEEEeeCCCeEEEEEccCCee
Q 040370           89 ---------------IRLWDGVSANCVRSIVGAHGT-------AEATSANFTKDQR---FVLSCGKDSTVKLWEVSSGRL  143 (228)
Q Consensus        89 ---------------v~iwd~~~~~~~~~~~~~~~~-------~~i~~~~~~~~~~---~l~~~~~d~~i~~wd~~~~~~  143 (228)
                                     |..+|.++++.+-.++..++.       .+........+++   .++.++.+|.++++|.++++.
T Consensus       262 ~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~  341 (689)
T 1yiq_A          262 KWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGEL  341 (689)
T ss_dssp             HHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCE
T ss_pred             CCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCE
Confidence                           999999999998877653221       1222222223554   788999999999999999998


Q ss_pred             EEEEecceee--------------------------e-----------eeeEEEECCCCcEEEEeeC-------------
Q 040370          144 VKQYLGATHT--------------------------Q-----------LRFQAVFNDTEEFVLSIDE-------------  173 (228)
Q Consensus       144 ~~~~~~~~~~--------------------------~-----------~~~~~~~~~~~~~~~~~~~-------------  173 (228)
                      +.........                          .           .-..++++|+...+++...             
T Consensus       342 l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~  421 (689)
T 1yiq_A          342 LSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAP  421 (689)
T ss_dssp             EEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCC
T ss_pred             eccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccc
Confidence            7543321100                          0           0011566777666665321             


Q ss_pred             -------------------------------CCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEE
Q 040370          174 -------------------------------PSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVR  222 (228)
Q Consensus       174 -------------------------------~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~  222 (228)
                                                     .+|.|..||+++++.+-+...  ..+...-.+...+.+++.++.||.++
T Consensus       422 ~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~--~~~~~~g~~~tagglvf~gt~dg~l~  499 (689)
T 1yiq_A          422 KRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPY--VTIFNGGTLSTAGNLVFEGSADGRVI  499 (689)
T ss_dssp             CCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEE--SSSCCCCEEEETTTEEEEECTTSEEE
T ss_pred             cccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccC--CCCccCccceECCCEEEEECCCCcEE
Confidence                                           137899999999998877632  22333335556778899999999999


Q ss_pred             Eeeec
Q 040370          223 FWKEI  227 (228)
Q Consensus       223 vwd~~  227 (228)
                      .||..
T Consensus       500 a~D~~  504 (689)
T 1yiq_A          500 AYAAD  504 (689)
T ss_dssp             EEETT
T ss_pred             EEECC
Confidence            99953

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.22  E-value=2.8e-09  Score=85.38  Aligned_cols=195  Identities=11%  Similarity=0.095  Sum_probs=132.3

Q ss_pred             CCEEEEecC------CCeEEEEEcccceEEeeeccceee----------------------------eccceeeEEeCCC
Q 040370           31 GDFLLAGTD------HPIAHLYDVNTFQCYLSANVPEIS----------------------------VNGAINQVRYSST   76 (228)
Q Consensus        31 ~~~l~~~~~------d~~i~vw~~~~~~~~~~~~~~~~~----------------------------~~~~i~~~~~~~~   76 (228)
                      +..+++++.      ++.|+.+|.++|+.+.........                            .......++++|+
T Consensus       174 ~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~  253 (677)
T 1kb0_A          174 KGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAE  253 (677)
T ss_dssp             TTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETT
T ss_pred             CCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCC
Confidence            345555543      689999999999987665432110                            0112245788888


Q ss_pred             CCeEEEEecCC-------------------eEEEEeCCCCceeeEEeccccc-------ceeEEEEECCCC---CEEEEe
Q 040370           77 GGMYVTASKDG-------------------AIRLWDGVSANCVRSIVGAHGT-------AEATSANFTKDQ---RFVLSC  127 (228)
Q Consensus        77 ~~~l~~~~~dg-------------------~v~iwd~~~~~~~~~~~~~~~~-------~~i~~~~~~~~~---~~l~~~  127 (228)
                      +..++.+..++                   .|..+|.++++....++..++.       .....+....+|   ..++.+
T Consensus       254 ~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~  333 (677)
T 1kb0_A          254 LNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHA  333 (677)
T ss_dssp             TTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEEC
T ss_pred             CCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEE
Confidence            88888887664                   5999999999988877653321       122223333467   689999


Q ss_pred             eCCCeEEEEEccCCeeEEEEecceee---------eee------------------------eEEEECCCCcEEEEeeC-
Q 040370          128 GKDSTVKLWEVSSGRLVKQYLGATHT---------QLR------------------------FQAVFNDTEEFVLSIDE-  173 (228)
Q Consensus       128 ~~d~~i~~wd~~~~~~~~~~~~~~~~---------~~~------------------------~~~~~~~~~~~~~~~~~-  173 (228)
                      +.+|.++++|.++++.+..+......         ..+                        ..++++|+...+++... 
T Consensus       334 ~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~  413 (677)
T 1kb0_A          334 PKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQN  413 (677)
T ss_dssp             CTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEE
T ss_pred             CCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChh
Confidence            99999999999999988766422100         000                        13567787777766422 


Q ss_pred             -----------------------------------------CCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEE
Q 040370          174 -----------------------------------------PSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAF  212 (228)
Q Consensus       174 -----------------------------------------~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  212 (228)
                                                               ..+.|..||+.+++.+-+..  +..++....+...+.++
T Consensus       414 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~--~~~~~~~g~~~~~g~~v  491 (677)
T 1kb0_A          414 VPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVE--HVSPWNGGTLTTAGNVV  491 (677)
T ss_dssp             CCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEE--ESSSCCCCEEEETTTEE
T ss_pred             cceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecC--CCCCCcCcceEeCCCEE
Confidence                                                     12789999999999887763  33344555566677888


Q ss_pred             EEecCCCCEEEeeec
Q 040370          213 ITCGTDRSVRFWKEI  227 (228)
Q Consensus       213 ~s~~~dg~i~vwd~~  227 (228)
                      +.++.||.+++||..
T Consensus       492 ~~g~~dg~l~a~D~~  506 (677)
T 1kb0_A          492 FQGTADGRLVAYHAA  506 (677)
T ss_dssp             EEECTTSEEEEEETT
T ss_pred             EEECCCCcEEEEECC
Confidence            889999999999963

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=99.20  E-value=2.9e-08  Score=72.44  Aligned_cols=191  Identities=8%  Similarity=0.010  Sum_probs=119.9

Q ss_pred             cceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccc---------------eeeeccceeeEEeCC-CCCeEEEE
Q 040370           20 HNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVP---------------EISVNGAINQVRYSS-TGGMYVTA   83 (228)
Q Consensus        20 ~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~---------------~~~~~~~i~~~~~~~-~~~~l~~~   83 (228)
                      ....+++|++++++++++..++.|..|+...++........               .......+..+++.+ +++ |+.+
T Consensus        19 ~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~-l~v~   97 (322)
T 2fp8_A           19 YAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ-LYIV   97 (322)
T ss_dssp             SCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE-EEEE
T ss_pred             CCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCc-EEEE
Confidence            45678899999987888888999999988765432211000               000023578899997 555 5555


Q ss_pred             ecCCeEEEEeCCCCceeeEEecc---cccceeEEEEECC-CCCEEEEeeC-----------------CCeEEEEEccCCe
Q 040370           84 SKDGAIRLWDGVSANCVRSIVGA---HGTAEATSANFTK-DQRFVLSCGK-----------------DSTVKLWEVSSGR  142 (228)
Q Consensus        84 ~~dg~v~iwd~~~~~~~~~~~~~---~~~~~i~~~~~~~-~~~~l~~~~~-----------------d~~i~~wd~~~~~  142 (228)
                      ...+.+..+|..+++. ..+...   ........+++.+ +|+..++-..                 ++.|..+|..+++
T Consensus        98 d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~  176 (322)
T 2fp8_A           98 DCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKE  176 (322)
T ss_dssp             ETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTE
T ss_pred             ECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCE
Confidence            5555688888765542 222211   0113467899999 8886665432                 3678899987665


Q ss_pred             eEEEEecceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcc--eeEEeecCCCCCcEEEEeCCCCcEEEEecC
Q 040370          143 LVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAE--KVAKWSSNHIGAPRWIEHSPAEAAFITCGT  217 (228)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~  217 (228)
                      ......   .......+++++++..++++...++.|.+|++....  ....+.. ..+ ...+++.++|++.++...
T Consensus       177 ~~~~~~---~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~-~~g-P~gi~~d~~G~l~va~~~  248 (322)
T 2fp8_A          177 TTLLLK---ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK-IPN-PGNIKRNADGHFWVSSSE  248 (322)
T ss_dssp             EEEEEE---EESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEE-CSS-EEEEEECTTSCEEEEEEE
T ss_pred             EEEecc---CCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEe-CCC-CCCeEECCCCCEEEEecC
Confidence            433222   223345688999998777766656899999987521  1112211 223 788999999987766543

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.16  E-value=7.9e-09  Score=75.42  Aligned_cols=188  Identities=5%  Similarity=-0.009  Sum_probs=121.6

Q ss_pred             cCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCCC
Q 040370           18 DTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSA   97 (228)
Q Consensus        18 ~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~   97 (228)
                      +...+.++...+++. +..++.++.|..+|.+ ++........    ...+.++...+++.. ..++  +.+..+| .++
T Consensus       135 ~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~----~~~~~~~~~d~~g~l-~v~t--~~l~~~d-~~g  204 (330)
T 3hxj_A          135 KKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKTN----DAITSAASIGKDGTI-YFGS--DKVYAIN-PDG  204 (330)
T ss_dssp             SSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEECS----SCCCSCCEECTTCCE-EEES--SSEEEEC-TTS
T ss_pred             CCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEecC----CCceeeeEEcCCCEE-EEEe--CEEEEEC-CCC
Confidence            344455666665665 5667778899999988 7665544432    345677778777764 4454  7899999 777


Q ss_pred             ceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCCe
Q 040370           98 NCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNE  177 (228)
Q Consensus        98 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  177 (228)
                      +........  ...+.++...+++. +..++.++.+..+|. +++....+...  ......+...+++...+. .. ++.
T Consensus       205 ~~~~~~~~~--~~~~~~~~~~~~g~-l~v~t~~~gl~~~~~-~g~~~~~~~~~--~~~~~~~~~~~~g~l~v~-t~-~gg  276 (330)
T 3hxj_A          205 TEKWNFYAG--YWTVTRPAISEDGT-IYVTSLDGHLYAINP-DGTEKWRFKTG--KRIESSPVIGNTDTIYFG-SY-DGH  276 (330)
T ss_dssp             CEEEEECCS--SCCCSCCEECTTSC-EEEEETTTEEEEECT-TSCEEEEEECS--SCCCSCCEECTTSCEEEE-CT-TCE
T ss_pred             cEEEEEccC--CcceeceEECCCCe-EEEEcCCCeEEEECC-CCCEeEEeeCC--CCccccceEcCCCeEEEe-cC-CCC
Confidence            766655543  34577777887765 556667788888884 55655555432  222233444555544443 33 588


Q ss_pred             EEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeee
Q 040370          178 IVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKE  226 (228)
Q Consensus       178 i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~  226 (228)
                      +..+|. +++..... ......+.++...+++. |..++.+|.+.+...
T Consensus       277 l~~~d~-~g~~~~~~-~~~~~~~~~~~~d~~g~-l~~gt~~G~~~~~~~  322 (330)
T 3hxj_A          277 LYAINP-DGTEKWNF-ETGSWIIATPVIDENGT-IYFGTRNGKFYALFN  322 (330)
T ss_dssp             EEEECT-TSCEEEEE-ECSSCCCSCCEECTTCC-EEEECTTSCEEEEEC
T ss_pred             EEEECC-CCcEEEEE-EcCCccccceEEcCCCE-EEEEcCCCeEEEEec
Confidence            999995 67766655 33445667777777776 555788999988654

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=99.15  E-value=2.8e-07  Score=64.55  Aligned_cols=203  Identities=10%  Similarity=0.096  Sum_probs=131.5

Q ss_pred             ecCcceEEEEEeCCCCEEE-EecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCC
Q 040370           17 QDTHNVRSVSFHPSGDFLL-AGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGV   95 (228)
Q Consensus        17 ~~~~~v~~~~~~~~~~~l~-~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~   95 (228)
                      +-...+..++|+|+++.|+ +...++.|...|.. ++.........   ......+++.+++.++++.-.++.+.++++.
T Consensus        24 g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g---~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~   99 (255)
T 3qqz_A           24 GITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDF---VKDLETIEYIGDNQFVISDERDYAIYVISLT   99 (255)
T ss_dssp             TCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSS---CSSEEEEEECSTTEEEEEETTTTEEEEEEEC
T ss_pred             CcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCC---CCChHHeEEeCCCEEEEEECCCCcEEEEEcC
Confidence            3346799999999766554 57778889999988 77666554321   3467788998888776776677889999876


Q ss_pred             CCce---eeEEec----ccccceeEEEEECCCCCEEEEeeCCCeEEEEEccC---CeeEEEEec-----ceeeeeeeEEE
Q 040370           96 SANC---VRSIVG----AHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSS---GRLVKQYLG-----ATHTQLRFQAV  160 (228)
Q Consensus        96 ~~~~---~~~~~~----~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~---~~~~~~~~~-----~~~~~~~~~~~  160 (228)
                      ....   ......    .........++|+|.++.|+++.......+|.+..   ...+.....     .........+.
T Consensus       100 ~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~  179 (255)
T 3qqz_A          100 PNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAE  179 (255)
T ss_dssp             TTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEE
T ss_pred             CCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEE
Confidence            5442   222221    11244568999999988777777665556665541   111222211     11122457888


Q ss_pred             ECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecC--C------CCCcEEEEeCCCCcEEEEecCCCCEEEee
Q 040370          161 FNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSN--H------IGAPRWIEHSPAEAAFITCGTDRSVRFWK  225 (228)
Q Consensus       161 ~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~--~------~~~v~~~~~~~~~~~l~s~~~dg~i~vwd  225 (228)
                      ++|....+++.+.....+..+|.. ++.+..+.-.  .      ....-.|+|.++|++.++ ++-+.+..+.
T Consensus       180 ~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n~~y~f~  250 (255)
T 3qqz_A          180 FNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEPNRFYRFT  250 (255)
T ss_dssp             EETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETTTEEEEEE
T ss_pred             EcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-cCCceEEEEE
Confidence            889887777777778999999965 5555544221  1      136788999999985555 6666555543

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=99.13  E-value=1.1e-07  Score=69.46  Aligned_cols=197  Identities=12%  Similarity=0.010  Sum_probs=120.4

Q ss_pred             ceEEEEEeC-CCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCC-CCCeEEEEec-------------
Q 040370           21 NVRSVSFHP-SGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSS-TGGMYVTASK-------------   85 (228)
Q Consensus        21 ~v~~~~~~~-~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~-------------   85 (228)
                      .+..+++.+ +++ |+++...+.|..+|..+++..................+++.+ +|+..++-..             
T Consensus        81 ~p~gi~~~~~~g~-l~v~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~  159 (322)
T 2fp8_A           81 RTYDISYNLQNNQ-LYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMD  159 (322)
T ss_dssp             CEEEEEEETTTTE-EEEEETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHH
T ss_pred             CCceEEEcCCCCc-EEEEECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehc
Confidence            578899998 555 444544455888887765422211111111123568899999 8986666432             


Q ss_pred             ----CCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEe-eCCCeEEEEEccCCe--eEEEEecceeeeeeeE
Q 040370           86 ----DGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSC-GKDSTVKLWEVSSGR--LVKQYLGATHTQLRFQ  158 (228)
Q Consensus        86 ----dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~d~~i~~wd~~~~~--~~~~~~~~~~~~~~~~  158 (228)
                          ++.|..+|..+++.......   ......++++|+++.|+.+ ...+.|.+|++....  ....+..  ... ...
T Consensus       160 ~~~~~g~v~~~d~~~~~~~~~~~~---~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~--~~g-P~g  233 (322)
T 2fp8_A          160 TSDKTGRLIKYDPSTKETTLLLKE---LHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK--IPN-PGN  233 (322)
T ss_dssp             HTCCCEEEEEEETTTTEEEEEEEE---ESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEE--CSS-EEE
T ss_pred             ccCCCceEEEEeCCCCEEEEeccC---CccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEe--CCC-CCC
Confidence                36788899876654332222   2234679999999866555 556889999987421  1112211  112 456


Q ss_pred             EEECCCCcEEEEeeC---------CCCeEEEEEcCCcceeEEeecCC---CCCcEEEEeCCCCcEEEEecCCCCEEEeee
Q 040370          159 AVFNDTEEFVLSIDE---------PSNEIVIWDALTAEKVAKWSSNH---IGAPRWIEHSPAEAAFITCGTDRSVRFWKE  226 (228)
Q Consensus       159 ~~~~~~~~~~~~~~~---------~d~~i~i~d~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~  226 (228)
                      +++.+++.+.++...         ..+.|..+|. .++.+..+....   ...+..+.+ .+++++++...++.|..+++
T Consensus       234 i~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~  311 (322)
T 2fp8_A          234 IKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVY  311 (322)
T ss_dssp             EEECTTSCEEEEEEEETTSSTTSCEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC
T ss_pred             eEECCCCCEEEEecCcccccccCCCccEEEEECC-CCCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEec
Confidence            788898886666433         1367888886 466666553222   234666766 46777777767888888875

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=99.13  E-value=1.4e-08  Score=82.34  Aligned_cols=194  Identities=11%  Similarity=0.089  Sum_probs=113.0

Q ss_pred             ceEEEEEe-CCCCEEEEecC-----CCeEEEEEcccc-eEEeeeccceeeeccceeeEEeCCCCCeEEEEecC-----Ce
Q 040370           21 NVRSVSFH-PSGDFLLAGTD-----HPIAHLYDVNTF-QCYLSANVPEISVNGAINQVRYSSTGGMYVTASKD-----GA   88 (228)
Q Consensus        21 ~v~~~~~~-~~~~~l~~~~~-----d~~i~vw~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~   88 (228)
                      .+...+|| |||++||.+..     ...|+++|+.++ +.+.  ...    ......+.|+|+++.|+....|     ..
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~--~~~----~~~~~~~~WspDg~~l~y~~~d~~~~~~~  248 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIA--DKV----SGTNGEIVWGPDHTSLFYVTKDETLRENK  248 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCC--CCE----EEECSCCEECSSTTEEEEEEECTTCCEEE
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCC--ccc----cCceeeEEEecCCCEEEEEEECCCCCCCE
Confidence            57889999 99998885432     235999999988 6221  111    2224678999999888877665     35


Q ss_pred             EEEEeCCCCcee--eEEecccccceeEEEEECCCCCEEEEeeC---CCeEEEEEccCCe-eE--EEEecceeeeeeeEEE
Q 040370           89 IRLWDGVSANCV--RSIVGAHGTAEATSANFTKDQRFVLSCGK---DSTVKLWEVSSGR-LV--KQYLGATHTQLRFQAV  160 (228)
Q Consensus        89 v~iwd~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---d~~i~~wd~~~~~-~~--~~~~~~~~~~~~~~~~  160 (228)
                      |.++++.+++..  ..+.... ......+.|+||+++|+..+.   ...|+++|+.++. ..  ..+... .........
T Consensus       249 v~~~~lgt~~~~~~lv~~~~~-~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~-~~~~~~s~~  326 (751)
T 2xe4_A          249 VWRHVMGKLQSEDVCLYEEHN-PLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPR-EKGVRYDVQ  326 (751)
T ss_dssp             EEEEETTSCGGGCEEEEECCC-TTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCC-CTTCCEEEE
T ss_pred             EEEEECCCCchhcEEEEecCC-CceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecC-CCCceEEEe
Confidence            888888776432  2222221 234567899999998876653   3468889988752 12  222211 222333444


Q ss_pred             ECCCCcEEEEeeCC---CCeEEEEEcCCcceeEE-eecCCCC--CcEEEEeCCCCcEEEEecCCCCEEEe
Q 040370          161 FNDTEEFVLSIDEP---SNEIVIWDALTAEKVAK-WSSNHIG--APRWIEHSPAEAAFITCGTDRSVRFW  224 (228)
Q Consensus       161 ~~~~~~~~~~~~~~---d~~i~i~d~~~~~~~~~-~~~~~~~--~v~~~~~~~~~~~l~s~~~dg~i~vw  224 (228)
                      |+..+.+++.+...   ...|..+|+.++..... +. .+..  .+..+.+. .+.++++...++..++|
T Consensus       327 ~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li-~~~~~~~l~~~~~~-~~~lv~~~~~~g~~~l~  394 (751)
T 2xe4_A          327 MHGTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLV-DHSEDVFMESIAVR-SNYLVVAGRRAGLTRIW  394 (751)
T ss_dssp             EETTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEE-CCCSSEEEEEEEEC-SSEEEEEEEETTEEEEE
T ss_pred             eeeCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEE-CCCCCcEEEEEEEE-CCEEEEEEEeCCEEEEE
Confidence            44444444444331   24677778765322222 21 2222  34556654 34556666677765554

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.09  E-value=5.9e-08  Score=68.34  Aligned_cols=154  Identities=6%  Similarity=0.025  Sum_probs=111.1

Q ss_pred             EEEEeCCCCEEE-EecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCCCceeeE
Q 040370           24 SVSFHPSGDFLL-AGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRS  102 (228)
Q Consensus        24 ~~~~~~~~~~l~-~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~  102 (228)
                      .+++.  ++.|+ +.-.++.+.++|..+.+.+..+... .. .    ...++++++.++++..++.|.++|..+.+....
T Consensus        70 Gi~~~--g~~lyv~t~~~~~v~viD~~t~~v~~~i~~g-~~-~----g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~  141 (266)
T 2iwa_A           70 GLTLL--NEKLYQVVWLKNIGFIYDRRTLSNIKNFTHQ-MK-D----GWGLATDGKILYGSDGTSILYEIDPHTFKLIKK  141 (266)
T ss_dssp             EEEEE--TTEEEEEETTCSEEEEEETTTTEEEEEEECC-SS-S----CCEEEECSSSEEEECSSSEEEEECTTTCCEEEE
T ss_pred             EEEEe--CCEEEEEEecCCEEEEEECCCCcEEEEEECC-CC-C----eEEEEECCCEEEEECCCCeEEEEECCCCcEEEE
Confidence            34443  44554 4556889999999999887766543 11 1    233556788787777889999999999988888


Q ss_pred             Eecccccc---eeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEeccee-----------eeeeeEEEECCCCcEE
Q 040370          103 IVGAHGTA---EATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATH-----------TQLRFQAVFNDTEEFV  168 (228)
Q Consensus       103 ~~~~~~~~---~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~  168 (228)
                      +.......   .++.+.|. ++...+....++.|.+.|..+++.+..+.....           ......++++|+++.+
T Consensus       142 I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~l  220 (266)
T 2iwa_A          142 HNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRI  220 (266)
T ss_dssp             EECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEE
T ss_pred             EEECCCCcccccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEE
Confidence            77532122   35677777 676555555678999999999999888864211           1245789999999999


Q ss_pred             EEeeCCCCeEEEEEcCCc
Q 040370          169 LSIDEPSNEIVIWDALTA  186 (228)
Q Consensus       169 ~~~~~~d~~i~i~d~~~~  186 (228)
                      ++++...+.+...++...
T Consensus       221 fVTgk~~~~v~~i~l~~~  238 (266)
T 2iwa_A          221 FVTGKLWPKLFEIKLHLV  238 (266)
T ss_dssp             EEEETTCSEEEEEEEEEC
T ss_pred             EEECCCCCeEEEEEEecc
Confidence            998887899999887654

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.08  E-value=3.7e-07  Score=64.73  Aligned_cols=180  Identities=8%  Similarity=-0.011  Sum_probs=113.0

Q ss_pred             cceEEEEEeCCCCEEE-EecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEec---CCeEEEEeCC
Q 040370           20 HNVRSVSFHPSGDFLL-AGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASK---DGAIRLWDGV   95 (228)
Q Consensus        20 ~~v~~~~~~~~~~~l~-~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---dg~v~iwd~~   95 (228)
                      .....++++|++..|+ +-...+.|.+++++...........    ......++++|++..|+.+..   .+.|..+++.
T Consensus        79 ~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~----~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~d  154 (267)
T 1npe_A           79 GSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTG----LVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMD  154 (267)
T ss_dssp             CCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSS----CSSEEEEEEETTTTEEEEEECCSSSCEEEEEETT
T ss_pred             CCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECC----CCCccEEEEeeCCCEEEEEECCCCCcEEEEEecC
Confidence            4678999999755554 5556788999998753321111111    235688999996665555543   3688888875


Q ss_pred             CCceeeEEecccccceeEEEEECCCCCEEEEe-eCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCC
Q 040370           96 SANCVRSIVGAHGTAEATSANFTKDQRFVLSC-GKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEP  174 (228)
Q Consensus        96 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (228)
                      . .....+... .......+++++++..|+.+ ...+.|.++|+............   .....++.  ++..++.+...
T Consensus       155 g-~~~~~~~~~-~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~---~~P~gi~~--d~~~lyva~~~  227 (267)
T 1npe_A          155 G-TNRRILAQD-NLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGL---QYPFAVTS--YGKNLYYTDWK  227 (267)
T ss_dssp             S-CCCEEEECT-TCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECC---CSEEEEEE--ETTEEEEEETT
T ss_pred             C-CCcEEEEEC-CCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecCC---CCceEEEE--eCCEEEEEECC
Confidence            3 333333211 13456889999987665544 45678999998754433333221   12233443  35666666666


Q ss_pred             CCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCc
Q 040370          175 SNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEA  210 (228)
Q Consensus       175 d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~  210 (228)
                      .+.|..+|..+++....+..+.......+++.|++.
T Consensus       228 ~~~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~~~  263 (267)
T 1npe_A          228 TNSVIAMDLAISKEMDTFHPHKQTRLYGITIALSQC  263 (267)
T ss_dssp             TTEEEEEETTTTEEEEEECCSSCCCCCCEEEECSCC
T ss_pred             CCeEEEEeCCCCCceEEEccccccccceeeecCccC
Confidence            789999999999888887443333467788887654

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.02  E-value=6.8e-08  Score=70.45  Aligned_cols=175  Identities=7%  Similarity=-0.034  Sum_probs=114.4

Q ss_pred             CCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCCCceeeEEecccccc
Q 040370           31 GDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTA  110 (228)
Q Consensus        31 ~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~  110 (228)
                      +..+..++.++.|..+|.+ ++........    ...+.++...+++. +..++.++.|..+|.. ++....+...  ..
T Consensus       107 ~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~----~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~--~~  177 (330)
T 3hxj_A          107 EDILYVTSMDGHLYAINTD-GTEKWRFKTK----KAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKTN--DA  177 (330)
T ss_dssp             TTEEEEECTTSEEEEECTT-SCEEEEEECS----SCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEECS--SC
T ss_pred             CCEEEEEecCCEEEEEcCC-CCEEEEEcCC----CceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEecC--CC
Confidence            5567778888999999988 6655444332    34456667776776 6667888999999998 7776666543  34


Q ss_pred             eeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeE
Q 040370          111 EATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVA  190 (228)
Q Consensus       111 ~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~  190 (228)
                      .+.++...+++...+ ++  +.+..+| .+++.......  ....+..+...+++...+.+ . ++.+..+| .+++...
T Consensus       178 ~~~~~~~d~~g~l~v-~t--~~l~~~d-~~g~~~~~~~~--~~~~~~~~~~~~~g~l~v~t-~-~~gl~~~~-~~g~~~~  248 (330)
T 3hxj_A          178 ITSAASIGKDGTIYF-GS--DKVYAIN-PDGTEKWNFYA--GYWTVTRPAISEDGTIYVTS-L-DGHLYAIN-PDGTEKW  248 (330)
T ss_dssp             CCSCCEECTTCCEEE-ES--SSEEEEC-TTSCEEEEECC--SSCCCSCCEECTTSCEEEEE-T-TTEEEEEC-TTSCEEE
T ss_pred             ceeeeEEcCCCEEEE-Ee--CEEEEEC-CCCcEEEEEcc--CCcceeceEECCCCeEEEEc-C-CCeEEEEC-CCCCEeE
Confidence            566677777777544 44  7799999 67776655543  23445566677776655543 3 57888887 4566655


Q ss_pred             EeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEee
Q 040370          191 KWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWK  225 (228)
Q Consensus       191 ~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd  225 (228)
                      ... .....+..+...+++. |..++.+|.+..+|
T Consensus       249 ~~~-~~~~~~~~~~~~~~g~-l~v~t~~ggl~~~d  281 (330)
T 3hxj_A          249 RFK-TGKRIESSPVIGNTDT-IYFGSYDGHLYAIN  281 (330)
T ss_dssp             EEE-CSSCCCSCCEECTTSC-EEEECTTCEEEEEC
T ss_pred             Eee-CCCCccccceEcCCCe-EEEecCCCCEEEEC
Confidence            552 2333344455655554 55667777777776

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=99.02  E-value=2.1e-06  Score=64.22  Aligned_cols=198  Identities=9%  Similarity=-0.010  Sum_probs=124.0

Q ss_pred             cCcceEEEEEeCCCCEEE-EecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCC-CeEEEEecCCeEEEEeCC
Q 040370           18 DTHNVRSVSFHPSGDFLL-AGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTG-GMYVTASKDGAIRLWDGV   95 (228)
Q Consensus        18 ~~~~v~~~~~~~~~~~l~-~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~v~iwd~~   95 (228)
                      ....+..++|++.+..|+ +-...+.|..++++...........    ......+++.+.+ +++++-...+.|.+.++.
T Consensus       114 ~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~----~~~p~glavd~~~g~lY~~d~~~~~I~~~~~d  189 (386)
T 3v65_B          114 NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTG----LESPGGLAVDWVHDKLYWTDSGTSRIEVANLD  189 (386)
T ss_dssp             SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSS----CSCCCCEEEETTTTEEEEEETTTTEEEECBTT
T ss_pred             CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCC----CCCccEEEEEeCCCeEEEEcCCCCeEEEEeCC
Confidence            345678899998555544 5556788999998765433222211    2345678888754 445555667889998886


Q ss_pred             CCceeeEEecccccceeEEEEECCCCCEEEEee-CC-CeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeC
Q 040370           96 SANCVRSIVGAHGTAEATSANFTKDQRFVLSCG-KD-STVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDE  173 (228)
Q Consensus        96 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (228)
                      .......+...  -.....++++|.+..|+.+. .. +.|..+++... ....+.. ........++++|++..++.+..
T Consensus       190 g~~~~~l~~~~--l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~-~~~~~~~-~~~~~PnGlavd~~~~~lY~aD~  265 (386)
T 3v65_B          190 GAHRKVLLWQS--LEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGS-GRRIIAD-THLFWPNGLTIDYAGRRMYWVDA  265 (386)
T ss_dssp             SCSCEEEECSS--CSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC-SCEEEEC-SSCSCEEEEEEEGGGTEEEEEET
T ss_pred             CCceEEeecCC--CCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCC-CcEEEEE-CCCCCeeeEEEeCCCCEEEEEEC
Confidence            44333222221  34568899998666555444 34 67888887643 3333321 12334567889988888888887


Q ss_pred             CCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEee
Q 040370          174 PSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWK  225 (228)
Q Consensus       174 ~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd  225 (228)
                      ..+.|..+|+...... .+..........+++ ..+.++++-...+.|..++
T Consensus       266 ~~~~I~~~d~dG~~~~-~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~~~  315 (386)
T 3v65_B          266 KHHVIERANLDGSHRK-AVISQGLPHPFAITV-FEDSLYWTDWHTKSINSAN  315 (386)
T ss_dssp             TTTEEEEECTTSCSCE-EEECSSCSSEEEEEE-ETTEEEEEETTTTEEEEEE
T ss_pred             CCCEEEEEeCCCCeeE-EEEECCCCCceEEEE-ECCEEEEeeCCCCeEEEEE
Confidence            7799999998644333 332333455678888 4456666666677777665

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.02  E-value=4.2e-07  Score=67.69  Aligned_cols=188  Identities=6%  Similarity=0.003  Sum_probs=112.6

Q ss_pred             CCCEEEEecCCCeEEEEEcccceEEeeeccceeee-----ccce-eeEEeCCCCCeEEEEecCCeEEEEeCCCCceeeEE
Q 040370           30 SGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISV-----NGAI-NQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSI  103 (228)
Q Consensus        30 ~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~-----~~~i-~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~  103 (228)
                      .+..+++++.++.|..+|.++++.+..........     ...+ ..+..  ++..++.++.++.|..+|.++++.....
T Consensus        52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~~g~l~a~d~~tG~~~W~~  129 (376)
T 3q7m_A           52 ADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTV--SGGHVYIGSEKAQVYALNTSDGTVAWQT  129 (376)
T ss_dssp             ETTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred             ECCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceE--eCCEEEEEcCCCEEEEEECCCCCEEEEE
Confidence            46678888889999999999998876655432100     1112 12222  4567888889999999999999987766


Q ss_pred             ecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeee---eeEEEECCCCcEEEEeeCCCCeEEE
Q 040370          104 VGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQL---RFQAVFNDTEEFVLSIDEPSNEIVI  180 (228)
Q Consensus       104 ~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~d~~i~i  180 (228)
                      ....  ........  .+..++.++.++.+..+|.++++.+...........   .......  +..++++. .++.+..
T Consensus       130 ~~~~--~~~~~p~~--~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~v~~g~-~~g~l~~  202 (376)
T 3q7m_A          130 KVAG--EALSRPVV--SDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--FGAAVVGG-DNGRVSA  202 (376)
T ss_dssp             ECSS--CCCSCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--TTEEEECC-TTTEEEE
T ss_pred             eCCC--ceEcCCEE--ECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--CCEEEEEc-CCCEEEE
Confidence            5532  11111111  245788888999999999999988877654221100   0111111  34455544 4699999


Q ss_pred             EEcCCcceeEEeecCCCCC------cEEEEeCC--CCcEEEEecCCCCEEEeee
Q 040370          181 WDALTAEKVAKWSSNHIGA------PRWIEHSP--AEAAFITCGTDRSVRFWKE  226 (228)
Q Consensus       181 ~d~~~~~~~~~~~~~~~~~------v~~~~~~~--~~~~l~s~~~dg~i~vwd~  226 (228)
                      +|.++++............      +..+.-.|  .+..++.++.++.+..+|.
T Consensus       203 ~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~  256 (376)
T 3q7m_A          203 VLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDL  256 (376)
T ss_dssp             EETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEET
T ss_pred             EECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEEC
Confidence            9999998876653221100      00011112  2445666667777777764

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.02  E-value=2.1e-07  Score=69.32  Aligned_cols=183  Identities=11%  Similarity=0.035  Sum_probs=115.4

Q ss_pred             CCEEEEecCCCeEEEEEcccceEEeeeccceeeec---cceeeEEeCC--CCCeEEEEecCCeEEEEeCCCCceeeEEec
Q 040370           31 GDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVN---GAINQVRYSS--TGGMYVTASKDGAIRLWDGVSANCVRSIVG  105 (228)
Q Consensus        31 ~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~---~~i~~~~~~~--~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~  105 (228)
                      +..++.++.++.+..+|..+++.............   ..+..+.-.|  .+..++.++.++.+..+|.++++.......
T Consensus       188 ~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~  267 (376)
T 3q7m_A          188 FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKREL  267 (376)
T ss_dssp             TTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEECC
T ss_pred             CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeeccC
Confidence            45677888899999999999987766543211000   0000111112  246788888899999999999987766543


Q ss_pred             ccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCC
Q 040370          106 AHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALT  185 (228)
Q Consensus       106 ~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~  185 (228)
                      .    ....+..  ++..++.++.++.+..+|..+++.+........ ........  .+..++++.. +|.+.++|.++
T Consensus       268 ~----~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~-~~~~~~~~--~~~~l~v~~~-~g~l~~~d~~t  337 (376)
T 3q7m_A          268 G----SVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLH-RLLTSPVL--YNGNLVVGDS-EGYLHWINVED  337 (376)
T ss_dssp             C----CEEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEEECTTTT-SCCCCCEE--ETTEEEEECT-TSEEEEEETTT
T ss_pred             C----CCCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEeecccCC-CcccCCEE--ECCEEEEEeC-CCeEEEEECCC
Confidence            2    2233333  366788888899999999999988766542111 11111111  2455565444 69999999999


Q ss_pred             cceeEEeecCCCCCcEE-EEeCCCCcEEEEecCCCCEEEeee
Q 040370          186 AEKVAKWSSNHIGAPRW-IEHSPAEAAFITCGTDRSVRFWKE  226 (228)
Q Consensus       186 ~~~~~~~~~~~~~~v~~-~~~~~~~~~l~s~~~dg~i~vwd~  226 (228)
                      ++.+..... ....+.. ...  .+..|+.++.+|.|..||.
T Consensus       338 G~~~~~~~~-~~~~~~~~~~~--~~~~l~v~~~~G~l~~~~~  376 (376)
T 3q7m_A          338 GRFVAQQKV-DSSGFQTEPVA--ADGKLLIQAKDGTVYSITR  376 (376)
T ss_dssp             CCEEEEEEC-CTTCBCSCCEE--ETTEEEEEBTTSCEEEEEC
T ss_pred             CcEEEEEec-CCCcceeCCEE--ECCEEEEEeCCCEEEEEeC
Confidence            998877633 2222221 222  2456788889999999873

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=99.00  E-value=1.6e-07  Score=75.27  Aligned_cols=186  Identities=12%  Similarity=0.076  Sum_probs=120.7

Q ss_pred             CCeEEEEEcccceEEeeeccceee---------------------------eccceeeEEeCCCCCeEEEEecCC-----
Q 040370           40 HPIAHLYDVNTFQCYLSANVPEIS---------------------------VNGAINQVRYSSTGGMYVTASKDG-----   87 (228)
Q Consensus        40 d~~i~vw~~~~~~~~~~~~~~~~~---------------------------~~~~i~~~~~~~~~~~l~~~~~dg-----   87 (228)
                      +|.|..+|.++|+.+.........                           .......+++.|+...++.++.++     
T Consensus       177 ~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~  256 (668)
T 1kv9_A          177 RGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNR  256 (668)
T ss_dssp             BCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCH
T ss_pred             CCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCcccc
Confidence            589999999999987766432100                           011123478888888888887776     


Q ss_pred             --------------eEEEEeCCCCceeeEEeccccc-------ceeEEEEECCCCC---EEEEeeCCCeEEEEEccCCee
Q 040370           88 --------------AIRLWDGVSANCVRSIVGAHGT-------AEATSANFTKDQR---FVLSCGKDSTVKLWEVSSGRL  143 (228)
Q Consensus        88 --------------~v~iwd~~~~~~~~~~~~~~~~-------~~i~~~~~~~~~~---~l~~~~~d~~i~~wd~~~~~~  143 (228)
                                    .|.-+|.++++.+-.++..++.       .+.....+..+++   .++.++.+|.++++|.++++.
T Consensus       257 ~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~  336 (668)
T 1kv9_A          257 EVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKL  336 (668)
T ss_dssp             HHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCE
T ss_pred             CCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCE
Confidence                          3999999999988887653221       2222223333564   688999999999999999998


Q ss_pred             EEEEecceee----------eee------------------------eEEEECCCCcEEEEe------------------
Q 040370          144 VKQYLGATHT----------QLR------------------------FQAVFNDTEEFVLSI------------------  171 (228)
Q Consensus       144 ~~~~~~~~~~----------~~~------------------------~~~~~~~~~~~~~~~------------------  171 (228)
                      +.........          ..+                        ..++++|+...+++.                  
T Consensus       337 l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~  416 (668)
T 1kv9_A          337 ISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTR  416 (668)
T ss_dssp             EEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCC
T ss_pred             eccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccc
Confidence            7544321100          000                        014555655554431                  


Q ss_pred             -----------------eCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370          172 -----------------DEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEI  227 (228)
Q Consensus       172 -----------------~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~  227 (228)
                                       ...+|.|..||..+++.+-+....  .+.....+...+.+++.++.||.++.||..
T Consensus       417 ~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~--~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~  487 (668)
T 1kv9_A          417 KAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYP--THWNGGTLSTAGNLVFQGTAAGQMHAYSAD  487 (668)
T ss_dssp             SSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEES--SSCCCCEEEETTTEEEEECTTSEEEEEETT
T ss_pred             cccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCC--CCCcCceeEeCCCEEEEECCcccchhhhhh
Confidence                             112488999999999988776332  233333344467788889999999999853

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.97  E-value=8.9e-09  Score=76.23  Aligned_cols=129  Identities=9%  Similarity=-0.084  Sum_probs=92.1

Q ss_pred             eEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEe----------cCCeEEEEeCCCCceeeEEecccc---
Q 040370           42 IAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTAS----------KDGAIRLWDGVSANCVRSIVGAHG---  108 (228)
Q Consensus        42 ~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~----------~dg~v~iwd~~~~~~~~~~~~~~~---  108 (228)
                      .|.++|..+++.+..+...    ..+  .+.++|++++++++.          .++.|.+||+.+++.+.++.....   
T Consensus        47 ~vsvID~~t~~v~~~i~vG----~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~  120 (368)
T 1mda_H           47 ENWVSCAGCGVTLGHSLGA----FLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRF  120 (368)
T ss_dssp             EEEEEETTTTEEEEEEEEC----TTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSC
T ss_pred             eEEEEECCCCeEEEEEeCC----CCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCcccc
Confidence            8899999999988776643    334  799999999888886          368899999999999998865310   


Q ss_pred             --cceeEEEEECCCCCEEEEeeC--CCeEEE--EEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEE
Q 040370          109 --TAEATSANFTKDQRFVLSCGK--DSTVKL--WEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWD  182 (228)
Q Consensus       109 --~~~i~~~~~~~~~~~l~~~~~--d~~i~~--wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d  182 (228)
                        ......+.++|||++++++..  +..+.+  +|+.+   +..+...  . .   ....|++...+.+.+.|+.+.+.|
T Consensus       121 ~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~--~-~---~~~~p~g~~~~~~~~~dg~~~~vd  191 (368)
T 1mda_H          121 SVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSA--S-C---FHIHPGAAATHYLGSCPASLAASD  191 (368)
T ss_dssp             CBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECS--S-C---CCCEEEETTEEECCCCTTSCEEEE
T ss_pred             ccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECC--C-c---eEEccCCCeEEEEEcCCCCEEEEE
Confidence              123457899999999998874  457888  99877   3444321  1 1   112345544444555678888888


Q ss_pred             cCC
Q 040370          183 ALT  185 (228)
Q Consensus       183 ~~~  185 (228)
                      ..+
T Consensus       192 ~~~  194 (368)
T 1mda_H          192 LAA  194 (368)
T ss_dssp             CCS
T ss_pred             Ccc
Confidence            876

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.96  E-value=3.5e-06  Score=62.16  Aligned_cols=197  Identities=9%  Similarity=-0.016  Sum_probs=122.2

Q ss_pred             CcceEEEEEeCCCCEEE-EecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCC-CCeEEEEecCCeEEEEeCCC
Q 040370           19 THNVRSVSFHPSGDFLL-AGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSST-GGMYVTASKDGAIRLWDGVS   96 (228)
Q Consensus        19 ~~~v~~~~~~~~~~~l~-~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~v~iwd~~~   96 (228)
                      ...+..++|++....|+ +-...+.|..+++............    ......+++.+. ++++++-...+.|.+.++..
T Consensus        72 ~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~----~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG  147 (349)
T 3v64_C           72 LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTG----LESPGGLAVDWVHDKLYWTDSGTSRIEVANLDG  147 (349)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSS----CSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             CCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCC----CCCccEEEEecCCCeEEEEcCCCCeEEEEcCCC
Confidence            34578899998655554 4456788888888765432222111    234577888875 44555656678999999865


Q ss_pred             CceeeEEecccccceeEEEEECCCCCEEEEe-eCC-CeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCC
Q 040370           97 ANCVRSIVGAHGTAEATSANFTKDQRFVLSC-GKD-STVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEP  174 (228)
Q Consensus        97 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~d-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (228)
                      ......+...  -.....++++|.+..|+.. ... +.|..+++... ....+.. ........++++|++..++.+...
T Consensus       148 ~~~~~l~~~~--l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~-~~~~~~~-~~~~~PnGla~d~~~~~lY~aD~~  223 (349)
T 3v64_C          148 AHRKVLLWQS--LEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGS-GRRIIAD-THLFWPNGLTIDYAGRRMYWVDAK  223 (349)
T ss_dssp             CSCEEEECTT--CSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC-SCEESCC-SSCSCEEEEEEETTTTEEEEEETT
T ss_pred             CceEEEEeCC--CCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCC-CcEEEEE-CCCCCcceEEEeCCCCEEEEEECC
Confidence            4333222221  3456889999965555444 444 78888887643 3222211 123345678899888888888877


Q ss_pred             CCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEee
Q 040370          175 SNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWK  225 (228)
Q Consensus       175 d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd  225 (228)
                      .+.|..+|+..... ..+..........+++ .++.++++-...+.|...+
T Consensus       224 ~~~I~~~~~dG~~~-~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~~~  272 (349)
T 3v64_C          224 HHVIERANLDGSHR-KAVISQGLPHPFAITV-FEDSLYWTDWHTKSINSAN  272 (349)
T ss_dssp             TTEEEEEETTSCSC-EEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEEEE
T ss_pred             CCEEEEEeCCCCce-EEEEeCCCCCceEEEE-ECCEEEEecCCCCeEEEEE
Confidence            78999999864433 3332333455677887 3455566655666676655

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.92  E-value=7.9e-07  Score=71.22  Aligned_cols=118  Identities=15%  Similarity=0.112  Sum_probs=75.4

Q ss_pred             EEEEeC-CCCEEEEecCCC-----------eEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEec-CCeEE
Q 040370           24 SVSFHP-SGDFLLAGTDHP-----------IAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASK-DGAIR   90 (228)
Q Consensus        24 ~~~~~~-~~~~l~~~~~d~-----------~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~v~   90 (228)
                      +.++.| +++.++.|+.+.           .+.+||..+++.......+..+ .....++++.+++++++.|+. +..+.
T Consensus       190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~-~~~~~~~~~~~~g~lyv~GG~~~~~v~  268 (656)
T 1k3i_A          190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKH-DMFCPGISMDGNGQIVVTGGNDAKKTS  268 (656)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSC-CCSSCEEEECTTSCEEEECSSSTTCEE
T ss_pred             eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCC-CCccccccCCCCCCEEEeCCCCCCceE
Confidence            567777 888888876542           5889999887643222111111 223345778889999999884 46899


Q ss_pred             EEeCCCCceeeEEecccccceeEEEEECCCCCEEEEee-CC-----CeEEEEEccCCee
Q 040370           91 LWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCG-KD-----STVKLWEVSSGRL  143 (228)
Q Consensus        91 iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d-----~~i~~wd~~~~~~  143 (228)
                      +||..+.+....-.... ...-.+++..++++.++.|+ .+     ..+.+||..+.+.
T Consensus       269 ~yd~~t~~W~~~~~~~~-~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W  326 (656)
T 1k3i_A          269 LYDSSSDSWIPGPDMQV-ARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTW  326 (656)
T ss_dssp             EEEGGGTEEEECCCCSS-CCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEE
T ss_pred             EecCcCCceeECCCCCc-cccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcc
Confidence            99998765433222211 22223455667889888888 34     4689999877653

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.92  E-value=1.7e-06  Score=65.68  Aligned_cols=197  Identities=14%  Similarity=0.128  Sum_probs=119.9

Q ss_pred             ceEEEEEeCC--CCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecC---C-eEEEEeC
Q 040370           21 NVRSVSFHPS--GDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKD---G-AIRLWDG   94 (228)
Q Consensus        21 ~v~~~~~~~~--~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g-~v~iwd~   94 (228)
                      ....++|+|+  ...|+.+...+.|+.++..++........     ......++++++++++++....   . .+...+.
T Consensus       140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~~-----~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~  214 (433)
T 4hw6_A          140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTTN-----IGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTR  214 (433)
T ss_dssp             CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECCC-----CSCEEEEEECTTCCEEEEECCSCTTSEEEEEECG
T ss_pred             CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeecC-----CCCccEEEECCCCCEEEEcCCCCcccceEEEEEC
Confidence            4578999984  44455554448899999987775443321     4557899999999944444321   1 2333343


Q ss_pred             CCCcee-eEEecccccceeEEEEECC-CCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEee
Q 040370           95 VSANCV-RSIVGAHGTAEATSANFTK-DQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSID  172 (228)
Q Consensus        95 ~~~~~~-~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (228)
                      ..+... ..+..   ......++++| ++.++++-..++.|+.+|..++.....+...........++++|++..++.+.
T Consensus       215 ~~~~~~~~~~~~---~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad  291 (433)
T 4hw6_A          215 ASGFTERLSLCN---ARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIY  291 (433)
T ss_dssp             GGTTCCEEEEEE---CSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEE
T ss_pred             CCCeeccccccc---cCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEe
Confidence            222111 11211   23346688999 66666666677889999988776533332111222234689999999888777


Q ss_pred             CCCCeEEEEEcCC--cce--eEEeec--C------------CCCCcEEEEe---------CCCCcEEEEecCCCCEEEee
Q 040370          173 EPSNEIVIWDALT--AEK--VAKWSS--N------------HIGAPRWIEH---------SPAEAAFITCGTDRSVRFWK  225 (228)
Q Consensus       173 ~~d~~i~i~d~~~--~~~--~~~~~~--~------------~~~~v~~~~~---------~~~~~~l~s~~~dg~i~vwd  225 (228)
                      ...+.|+.++...  +..  ...+..  +            .-.....+++         .+++.++++-...++|+.++
T Consensus       292 ~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~  371 (433)
T 4hw6_A          292 NGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLT  371 (433)
T ss_dssp             TTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEEC
T ss_pred             CCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEEC
Confidence            7778999988652  221  111100  0            1224667898         77787777777777888776

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.88  E-value=8.1e-07  Score=62.01  Aligned_cols=150  Identities=12%  Similarity=0.098  Sum_probs=101.9

Q ss_pred             cceeeEEeCCCCCeEEEEecCC--eEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEE-EeeCCCeEEEEEccCCe
Q 040370           66 GAINQVRYSSTGGMYVTASKDG--AIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVL-SCGKDSTVKLWEVSSGR  142 (228)
Q Consensus        66 ~~i~~~~~~~~~~~l~~~~~dg--~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~d~~i~~wd~~~~~  142 (228)
                      .....+.|+ ++.++.+.+.+|  .|+.+|+++++.+..+.... ...-..++..  ++.|+ ....++.+.+||..+.+
T Consensus        43 ~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~-~~FgeGit~~--g~~ly~ltw~~~~v~v~D~~t~~  118 (262)
T 3nol_A           43 AFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK-RYFGEGISDW--KDKIVGLTWKNGLGFVWNIRNLR  118 (262)
T ss_dssp             CEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT-TCCEEEEEEE--TTEEEEEESSSSEEEEEETTTCC
T ss_pred             cccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCC-ccceeEEEEe--CCEEEEEEeeCCEEEEEECccCc
Confidence            345778898 666667777766  89999999999998887642 1112234443  44444 44568899999999999


Q ss_pred             eEEEEecceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCC-C---CCcEEEEeCCCCcEEEEecCC
Q 040370          143 LVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNH-I---GAPRWIEHSPAEAAFITCGTD  218 (228)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~-~---~~v~~~~~~~~~~~l~s~~~d  218 (228)
                      .+.++.....   ...+  .+++..++.+.+ ++.|.++|..+.+....+.... .   ..++.+.|. +|...+..-.+
T Consensus       119 ~~~ti~~~~e---G~gl--t~dg~~L~~SdG-s~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~  191 (262)
T 3nol_A          119 QVRSFNYDGE---GWGL--THNDQYLIMSDG-TPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQT  191 (262)
T ss_dssp             EEEEEECSSC---CCCE--EECSSCEEECCS-SSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTS
T ss_pred             EEEEEECCCC---ceEE--ecCCCEEEEECC-CCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEccC
Confidence            9998875321   1223  246777777766 5899999999998888764321 1   334557775 67666655566


Q ss_pred             CCEEEeee
Q 040370          219 RSVRFWKE  226 (228)
Q Consensus       219 g~i~vwd~  226 (228)
                      +.|.+.|.
T Consensus       192 ~~I~vIDp  199 (262)
T 3nol_A          192 NKIVRIDP  199 (262)
T ss_dssp             SEEEEECT
T ss_pred             CeEEEEEC
Confidence            77777664

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.88  E-value=3.9e-07  Score=73.04  Aligned_cols=189  Identities=12%  Similarity=0.088  Sum_probs=116.7

Q ss_pred             EEEEeCCCCEEEEecCCC-------------------eEEEEEcccceEEeeeccceee-----eccceeeEEeCCCCC-
Q 040370           24 SVSFHPSGDFLLAGTDHP-------------------IAHLYDVNTFQCYLSANVPEIS-----VNGAINQVRYSSTGG-   78 (228)
Q Consensus        24 ~~~~~~~~~~l~~~~~d~-------------------~i~vw~~~~~~~~~~~~~~~~~-----~~~~i~~~~~~~~~~-   78 (228)
                      .+++.|+...++.++.++                   .|..+|.++|+.+...+.....     ...+.....+..+|+ 
T Consensus       234 ~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~  313 (668)
T 1kv9_A          234 SMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKP  313 (668)
T ss_dssp             CEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEE
T ss_pred             ceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcE
Confidence            478888888888887766                   4999999999988776642100     012222222223554 


Q ss_pred             --eEEEEecCCeEEEEeCCCCceeeEEeccc----------cccee------------------------EEEEECCCCC
Q 040370           79 --MYVTASKDGAIRLWDGVSANCVRSIVGAH----------GTAEA------------------------TSANFTKDQR  122 (228)
Q Consensus        79 --~l~~~~~dg~v~iwd~~~~~~~~~~~~~~----------~~~~i------------------------~~~~~~~~~~  122 (228)
                        .++.++.+|.++++|.++|+.+.......          ...++                        ..++++|+..
T Consensus       314 ~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g  393 (668)
T 1kv9_A          314 RKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTG  393 (668)
T ss_dssp             EEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTT
T ss_pred             EEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCC
Confidence              68899999999999999999875443211          00000                        1256777666


Q ss_pred             EEEEe------------------------------------eCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCc
Q 040370          123 FVLSC------------------------------------GKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEE  166 (228)
Q Consensus       123 ~l~~~------------------------------------~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (228)
                      .++..                                    ..+|.|..||+.+++.+-+.....   ..........+.
T Consensus       394 ~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~---~~~~~~~~t~gg  470 (668)
T 1kv9_A          394 LVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPT---HWNGGTLSTAGN  470 (668)
T ss_dssp             EEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESS---SCCCCEEEETTT
T ss_pred             EEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCCC---CCcCceeEeCCC
Confidence            55431                                    134789999999999887765321   112222233566


Q ss_pred             EEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCc-EEEEec
Q 040370          167 FVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEA-AFITCG  216 (228)
Q Consensus       167 ~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~  216 (228)
                      .++.+ ..|+.++.||.++++.+..+..+....-.-+.+..+|+ +++.++
T Consensus       471 ~vf~g-~~dg~l~a~d~~tG~~l~~~~~~~~~~~~p~~~~~~G~~yva~~~  520 (668)
T 1kv9_A          471 LVFQG-TAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQYVAIMA  520 (668)
T ss_dssp             EEEEE-CTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred             EEEEE-CCcccchhhhhhcChhheEecCCCCcccCceEEEECCEEEEEEEe
Confidence            67765 45899999999999999887443211112233334565 444443

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=98.85  E-value=2.9e-06  Score=61.76  Aligned_cols=185  Identities=12%  Similarity=0.201  Sum_probs=113.6

Q ss_pred             CCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCC----CC---eEEE-Eec--CCeEEEEeC--CCC
Q 040370           30 SGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSST----GG---MYVT-ASK--DGAIRLWDG--VSA   97 (228)
Q Consensus        30 ~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~---~l~~-~~~--dg~v~iwd~--~~~   97 (228)
                      ...+++.....+-+.+||+ .|+.+..+.      .+.++.+..-|+    |+   ++++ .-.  +++|.+|++  .++
T Consensus        39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~------~g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~  111 (355)
T 3amr_A           39 QNSKLITTNKKSGLVVYSL-DGKMLHSYN------TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNG  111 (355)
T ss_dssp             GGCEEEEEETTTEEEEEET-TSCEEEEEC------CSCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTC
T ss_pred             CccEEEEEcCCCCEEEEcC-CCcEEEEcc------CCCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCC
Confidence            3456666667788999999 777766654      234555555442    22   2233 333  578999966  333


Q ss_pred             ceeeEEecc-----cccceeEEEEE--CCC-CC-EEEEeeCCCeEEEEEcc-------CCeeEEEEecceeeeeeeEEEE
Q 040370           98 NCVRSIVGA-----HGTAEATSANF--TKD-QR-FVLSCGKDSTVKLWEVS-------SGRLVKQYLGATHTQLRFQAVF  161 (228)
Q Consensus        98 ~~~~~~~~~-----~~~~~i~~~~~--~~~-~~-~l~~~~~d~~i~~wd~~-------~~~~~~~~~~~~~~~~~~~~~~  161 (228)
                      . +..+...     .....+..+++  +|. +. ++++...+|.+..|++.       +.+.++++..   ......+..
T Consensus       112 ~-l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l---gsq~Egcvv  187 (355)
T 3amr_A          112 T-LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM---NSQTEGMAA  187 (355)
T ss_dssp             C-EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC---SSCEEEEEE
T ss_pred             c-eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC---CCCcceEEE
Confidence            3 4444210     11145666777  774 43 68888889999999983       3355666654   234556777


Q ss_pred             CCCCcEEEEeeCCCCeEEEEEcC-----CcceeEEeecCCC-CCcEEEEe--CCCCc-EEEEec-CCCCEEEeee
Q 040370          162 NDTEEFVLSIDEPSNEIVIWDAL-----TAEKVAKWSSNHI-GAPRWIEH--SPAEA-AFITCG-TDRSVRFWKE  226 (228)
Q Consensus       162 ~~~~~~~~~~~~~d~~i~i~d~~-----~~~~~~~~~~~~~-~~v~~~~~--~~~~~-~l~s~~-~dg~i~vwd~  226 (228)
                      .+....++++-. +..|..++.+     +++.+.....++. ..+..|++  .++++ +|++++ .+++..+||.
T Consensus       188 Dd~~g~Lyv~eE-d~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr  261 (355)
T 3amr_A          188 DDEYGRLYIAEE-DEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDR  261 (355)
T ss_dssp             ETTTTEEEEEET-TTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEES
T ss_pred             cCCCCeEEEecc-cceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEEC
Confidence            788888888666 5667777754     2334444322333 36788887  44544 555555 6778999986

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.84  E-value=3.1e-06  Score=59.19  Aligned_cols=136  Identities=7%  Similarity=-0.053  Sum_probs=98.1

Q ss_pred             CCCEEE-EecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCCCceeeEEecccc
Q 040370           30 SGDFLL-AGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHG  108 (228)
Q Consensus        30 ~~~~l~-~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~  108 (228)
                      +++.|. ....++.+.+||.++.+.+..+....     .-..++  ++++.|+.+..++.|.++|.++.+....+.....
T Consensus       104 ~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~~-----eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~  176 (268)
T 3nok_A          104 DGERLYQLTWTEGLLFTWSGMPPQRERTTRYSG-----EGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLR  176 (268)
T ss_dssp             CSSCEEEEESSSCEEEEEETTTTEEEEEEECSS-----CCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEET
T ss_pred             eCCEEEEEEccCCEEEEEECCcCcEEEEEeCCC-----ceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCC
Confidence            444444 45568999999999999888776531     113444  4678888887889999999999998888765332


Q ss_pred             cc---eeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecce-----------eeeeeeEEEECCCCcEEEEeeC
Q 040370          109 TA---EATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGAT-----------HTQLRFQAVFNDTEEFVLSIDE  173 (228)
Q Consensus       109 ~~---~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~  173 (228)
                      ..   .++.+.|. +|+..+....+..|.+.|.++++.+..+....           .......++++|+++.++++|.
T Consensus       177 g~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK  254 (268)
T 3nok_A          177 GQPVELINELECA-NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK  254 (268)
T ss_dssp             TEECCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred             CcccccccccEEe-CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence            22   34566776 67666665578899999999999988876421           1134577999999888888775

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.81  E-value=7.5e-06  Score=62.17  Aligned_cols=154  Identities=8%  Similarity=0.089  Sum_probs=100.3

Q ss_pred             ceEEEEEeC-CCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEec-CC----eEEEEeC
Q 040370           21 NVRSVSFHP-SGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASK-DG----AIRLWDG   94 (228)
Q Consensus        21 ~v~~~~~~~-~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg----~v~iwd~   94 (228)
                      ....++++| ++..|+++...+.|+.+|++.+........     ......++|+++++.|+.+.. ++    .+...+.
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~~-----~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~  212 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYSG-----LSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR  212 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEECC-----CSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG
T ss_pred             CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEecC-----CCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC
Confidence            457899998 455666665558899999987664433221     456789999999996665554 22    3444443


Q ss_pred             CCCcee--eEEecccccceeEEEEECC-CCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEe
Q 040370           95 VSANCV--RSIVGAHGTAEATSANFTK-DQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSI  171 (228)
Q Consensus        95 ~~~~~~--~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (228)
                       .+...  ..+..   ......++++| ++..+++-..++.|..+|...+......... .......++++|++++++.+
T Consensus       213 -~g~~~~~~~l~~---~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~-~~~~P~gia~~pdG~~lyv~  287 (430)
T 3tc9_A          213 -ESGFKVITELTK---GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQ-DSGWEFHIQFHPSGNYAYIV  287 (430)
T ss_dssp             -GGTSCSEEEEEE---CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECS-SSSCCEEEEECTTSSEEEEE
T ss_pred             -CCceeeeeeecc---CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcC-CCCcceeEEEcCCCCEEEEE
Confidence             33222  22222   22346788999 6776666667789999999876542222211 12345679999999988877


Q ss_pred             eCCCCeEEEEEcC
Q 040370          172 DEPSNEIVIWDAL  184 (228)
Q Consensus       172 ~~~d~~i~i~d~~  184 (228)
                      ....+.|..++..
T Consensus       288 d~~~~~I~~~~~d  300 (430)
T 3tc9_A          288 VVNQHYILRSDYD  300 (430)
T ss_dssp             ETTTTEEEEEEEE
T ss_pred             ECCCCEEEEEeCC
Confidence            7777999998865

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.79  E-value=1.6e-06  Score=68.18  Aligned_cols=186  Identities=9%  Similarity=0.074  Sum_probs=113.9

Q ss_pred             EEEEeCCCCEEEEecCC----------------CeEEEEEcccceEEeeecccee------eeccceeeEEeCCCCC---
Q 040370           24 SVSFHPSGDFLLAGTDH----------------PIAHLYDVNTFQCYLSANVPEI------SVNGAINQVRYSSTGG---   78 (228)
Q Consensus        24 ~~~~~~~~~~l~~~~~d----------------~~i~vw~~~~~~~~~~~~~~~~------~~~~~i~~~~~~~~~~---   78 (228)
                      .+++.++...++.++.+                +.|..+|.++++.+...+....      ....++. +...++|+   
T Consensus       239 ~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~  317 (571)
T 2ad6_A          239 WYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMTP  317 (571)
T ss_dssp             CCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEEETTEEEE
T ss_pred             eEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEE-EecccCCcEEE
Confidence            35677766666665532                3699999999998777654310      0012221 22224664   


Q ss_pred             eEEEEecCCeEEEEeCCCCceeeEEecccc-----------ccee--------------------------EEEEECCCC
Q 040370           79 MYVTASKDGAIRLWDGVSANCVRSIVGAHG-----------TAEA--------------------------TSANFTKDQ  121 (228)
Q Consensus        79 ~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~-----------~~~i--------------------------~~~~~~~~~  121 (228)
                      .++.++.+|.+.++|.++++.+........           ..++                          ..++++|+.
T Consensus       318 ~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~  397 (571)
T 2ad6_A          318 LLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPES  397 (571)
T ss_dssp             EEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTT
T ss_pred             EEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCC
Confidence            577889999999999999988766643210           0111                          235677777


Q ss_pred             CEEEEee-------------------------------------CCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCC
Q 040370          122 RFVLSCG-------------------------------------KDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDT  164 (228)
Q Consensus       122 ~~l~~~~-------------------------------------~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (228)
                      .+++...                                     .++.|..||+.+++.+-++....   ..........
T Consensus       398 g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~---~~~~~~~~t~  474 (571)
T 2ad6_A          398 RTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKF---AAWGGTLYTK  474 (571)
T ss_dssp             TEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESS---CCCSBCEEET
T ss_pred             CEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEecCCC---CccceeEEEC
Confidence            7666553                                     35789999999998877765321   1111111223


Q ss_pred             CcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEE
Q 040370          165 EEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFIT  214 (228)
Q Consensus       165 ~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s  214 (228)
                      +..++++ ..|+.++.+|.++++.+.++..+....-.-+.+..+++.++.
T Consensus       475 gg~v~~g-~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~~~~~G~~yv~  523 (571)
T 2ad6_A          475 GGLVWYA-TLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYIG  523 (571)
T ss_dssp             TTEEEEE-CTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred             CCEEEEE-cCCCeEEEEECCCCCEEEEEeCCCCcEeeeEEEEECCEEEEE
Confidence            4556664 458999999999999998875443222222345567765443

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.79  E-value=2.1e-06  Score=65.17  Aligned_cols=153  Identities=9%  Similarity=0.034  Sum_probs=96.8

Q ss_pred             ceeeEEeCC-CCCeEEEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCC-C----eEEEEEccC
Q 040370           67 AINQVRYSS-TGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKD-S----TVKLWEVSS  140 (228)
Q Consensus        67 ~i~~~~~~~-~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-~----~i~~wd~~~  140 (228)
                      ....++++| ++..|+.+...+.|+.+|+..+........   ......+++++++++|+.+... +    .+.+++. .
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~~---~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~-~  213 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYSG---LSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR-E  213 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEECC---CSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-G
T ss_pred             CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEecC---CCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-C
Confidence            457889998 455566666558899999877654443332   4567899999999966666542 2    3444443 3


Q ss_pred             CeeE--EEEecceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcE-EEEecC
Q 040370          141 GRLV--KQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAA-FITCGT  217 (228)
Q Consensus       141 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~s~~~  217 (228)
                      +...  ..+.   .......++++|++..++++...++.|..++...+................++|+|++++ +++-..
T Consensus       214 g~~~~~~~l~---~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~  290 (430)
T 3tc9_A          214 SGFKVITELT---KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVN  290 (430)
T ss_dssp             GTSCSEEEEE---ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETT
T ss_pred             Cceeeeeeec---cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECC
Confidence            3222  2222   122345677888555566656557899999987665422222223345789999999994 555556


Q ss_pred             CCCEEEeee
Q 040370          218 DRSVRFWKE  226 (228)
Q Consensus       218 dg~i~vwd~  226 (228)
                      .+.|..++.
T Consensus       291 ~~~I~~~~~  299 (430)
T 3tc9_A          291 QHYILRSDY  299 (430)
T ss_dssp             TTEEEEEEE
T ss_pred             CCEEEEEeC
Confidence            778888764

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.78  E-value=2.5e-06  Score=67.29  Aligned_cols=185  Identities=11%  Similarity=0.117  Sum_probs=112.9

Q ss_pred             EEEEeCCCCEEEEecC--------------------C----CeEEEEEcccceEEeeeccceee------eccceeeEEe
Q 040370           24 SVSFHPSGDFLLAGTD--------------------H----PIAHLYDVNTFQCYLSANVPEIS------VNGAINQVRY   73 (228)
Q Consensus        24 ~~~~~~~~~~l~~~~~--------------------d----~~i~vw~~~~~~~~~~~~~~~~~------~~~~i~~~~~   73 (228)
                      .+++.|+...++.+..                    |    +.|..+|.++|+.+...+.....      ...++. +..
T Consensus       250 ~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~  328 (582)
T 1flg_A          250 SASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDY  328 (582)
T ss_dssp             CCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEE
T ss_pred             CceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-Eee
Confidence            3567777777776552                    2    68999999999988776542100      011221 122


Q ss_pred             C-CCCC---eEEEEecCCeEEEEeCCCCceeeEEecccc-----------ccee--------------------------
Q 040370           74 S-STGG---MYVTASKDGAIRLWDGVSANCVRSIVGAHG-----------TAEA--------------------------  112 (228)
Q Consensus        74 ~-~~~~---~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~-----------~~~i--------------------------  112 (228)
                      . .+|+   .++.++.+|.++++|.++++.+........           ..++                          
T Consensus       329 ~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~  408 (582)
T 1flg_A          329 KAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPF  408 (582)
T ss_dssp             ECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCT
T ss_pred             ecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCC
Confidence            1 3564   788899999999999999988766554310           0000                          


Q ss_pred             ------EEEEECCCCCEEEEee---------------------------------CCCeEEEEEccCCeeEEEEecceee
Q 040370          113 ------TSANFTKDQRFVLSCG---------------------------------KDSTVKLWEVSSGRLVKQYLGATHT  153 (228)
Q Consensus       113 ------~~~~~~~~~~~l~~~~---------------------------------~d~~i~~wd~~~~~~~~~~~~~~~~  153 (228)
                            ..++++|+...+++..                                 .+|.|.-||+.+++.+-+.....  
T Consensus       409 ~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~--  486 (582)
T 1flg_A          409 LGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHL--  486 (582)
T ss_dssp             TCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESS--
T ss_pred             ccccCCCCceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCCC--
Confidence                  1345666555554432                                 25789999999998876665321  


Q ss_pred             eeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEE
Q 040370          154 QLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFI  213 (228)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  213 (228)
                       ..........+..++. +..|+.++.||.++++.+-++..+......-+.+..+|++.+
T Consensus       487 -~~~~g~~~tagglvf~-g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~qYv  544 (582)
T 1flg_A          487 -PLWAGVLATAGNLVFT-GTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYL  544 (582)
T ss_dssp             -CCCSCCEEETTTEEEE-ECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred             -CCcccceEeCCCEEEE-ECCCCcEEEEECCCCCEEEEecCCCCcccCceEEEECCEEEE
Confidence             1111111123556666 445899999999999999888543322222355656776433

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=98.78  E-value=6.7e-06  Score=59.40  Aligned_cols=172  Identities=5%  Similarity=0.059  Sum_probs=114.8

Q ss_pred             eEEEeecCcceEEEEEeCCCCEEEEec-CCCeEEEEEcccceEEeeeccce----eeeccceeeEEe---CCCCCeEEEE
Q 040370           12 AFRVIQDTHNVRSVSFHPSGDFLLAGT-DHPIAHLYDVNTFQCYLSANVPE----ISVNGAINQVRY---SSTGGMYVTA   83 (228)
Q Consensus        12 ~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d~~i~vw~~~~~~~~~~~~~~~----~~~~~~i~~~~~---~~~~~~l~~~   83 (228)
                      .+.+.....---+++|++....|..++ ..+.|..|+...+..... ....    +.....+..+.|   .|+++++++.
T Consensus         5 ~i~~~~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~-~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~   83 (334)
T 2p9w_A            5 QIDVKVKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNV-VIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVM   83 (334)
T ss_dssp             EEEECCTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEE-CCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEE
T ss_pred             eEEecCcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEE-ecCCccccCCCcceeeEEEEeccCCCCcEEEEE
Confidence            344444445566789988656665555 789999999976543332 2211    110224578999   6887776654


Q ss_pred             e-------------cCCeEEEEeCC---CCceeeEEeccc-----------ccceeEEEEECCCCCEEEEeeCC-CeEEE
Q 040370           84 S-------------KDGAIRLWDGV---SANCVRSIVGAH-----------GTAEATSANFTKDQRFVLSCGKD-STVKL  135 (228)
Q Consensus        84 ~-------------~dg~v~iwd~~---~~~~~~~~~~~~-----------~~~~i~~~~~~~~~~~l~~~~~d-~~i~~  135 (228)
                      .             .+..|..+|+.   +++.+.......           .......++..++|+..++++.. +.|..
T Consensus        84 ~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~r  163 (334)
T 2p9w_A           84 KNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIAR  163 (334)
T ss_dssp             EETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEE
T ss_pred             cccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEE
Confidence            3             26789999999   787766554311           12357899999999999999888 88888


Q ss_pred             EEccCCeeEEEEecce----eeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCc
Q 040370          136 WEVSSGRLVKQYLGAT----HTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTA  186 (228)
Q Consensus       136 wd~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~  186 (228)
                      .+... +.+..+....    .......+++.|++..+++..+ .+.+..+|+++.
T Consensus       164 V~pdG-~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~-~g~L~~fD~~~p  216 (334)
T 2p9w_A          164 VSADG-KTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGG-PRALTAFDVSKP  216 (334)
T ss_dssp             ECTTS-CCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESS-SSSEEEEECSSS
T ss_pred             EeCCC-CEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcC-CCeEEEEcCCCC
Confidence            88653 3333322111    1122457899999999999888 799999998853

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.78  E-value=2e-06  Score=67.65  Aligned_cols=192  Identities=9%  Similarity=-0.025  Sum_probs=118.5

Q ss_pred             CEEEEecC------CCeEEEEEcccceEEeeeccceeee---------------------------------cc-ceeeE
Q 040370           32 DFLLAGTD------HPIAHLYDVNTFQCYLSANVPEISV---------------------------------NG-AINQV   71 (228)
Q Consensus        32 ~~l~~~~~------d~~i~vw~~~~~~~~~~~~~~~~~~---------------------------------~~-~i~~~   71 (228)
                      ..+++++.      ++.|..+|.++++.+..........                                 .. .-..+
T Consensus       161 g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~  240 (571)
T 2ad6_A          161 DTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWY  240 (571)
T ss_dssp             TEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCC
T ss_pred             CEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeE
Confidence            45555544      7899999999999877654321100                                 00 00235


Q ss_pred             EeCCCCCeEEEEecC----------------CeEEEEeCCCCceeeEEecccc--------cceeEEEEECCCCC---EE
Q 040370           72 RYSSTGGMYVTASKD----------------GAIRLWDGVSANCVRSIVGAHG--------TAEATSANFTKDQR---FV  124 (228)
Q Consensus        72 ~~~~~~~~l~~~~~d----------------g~v~iwd~~~~~~~~~~~~~~~--------~~~i~~~~~~~~~~---~l  124 (228)
                      ++.++...++.+..+                +.|..+|.++++.+-.++..++        ..++ -+....+++   .+
T Consensus       241 a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~-l~~~~~~G~~~~~v  319 (571)
T 2ad6_A          241 AYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMV-LTDQPVNGKMTPLL  319 (571)
T ss_dssp             EEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCE-EEEEEETTEEEEEE
T ss_pred             EEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCE-EEecccCCcEEEEE
Confidence            566666666666532                3699999999998877765321        1122 122224664   57


Q ss_pred             EEeeCCCeEEEEEccCCeeEEEEeccee-----------eeee--------------------------eEEEECCCCcE
Q 040370          125 LSCGKDSTVKLWEVSSGRLVKQYLGATH-----------TQLR--------------------------FQAVFNDTEEF  167 (228)
Q Consensus       125 ~~~~~d~~i~~wd~~~~~~~~~~~~~~~-----------~~~~--------------------------~~~~~~~~~~~  167 (228)
                      +.++.+|.++++|.++++.+........           ..++                          ..++++|+...
T Consensus       320 ~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~  399 (571)
T 2ad6_A          320 SHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRT  399 (571)
T ss_dssp             EEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTE
T ss_pred             EEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCE
Confidence            7888999999999999988776543210           0000                          12456666666


Q ss_pred             EEEee------------------------------------CCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcE
Q 040370          168 VLSID------------------------------------EPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAA  211 (228)
Q Consensus       168 ~~~~~------------------------------------~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  211 (228)
                      +++..                                    ..++.+..||..+++.+-+....  ..+....+...+..
T Consensus       400 ~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~--~~~~~~~~~t~gg~  477 (571)
T 2ad6_A          400 LYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEK--FAAWGGTLYTKGGL  477 (571)
T ss_dssp             EEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEES--SCCCSBCEEETTTE
T ss_pred             EEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEecCC--CCccceeEEECCCE
Confidence            55532                                    13589999999999988776332  22222222234566


Q ss_pred             EEEecCCCCEEEeee
Q 040370          212 FITCGTDRSVRFWKE  226 (228)
Q Consensus       212 l~s~~~dg~i~vwd~  226 (228)
                      ++.++.||.+..+|.
T Consensus       478 v~~g~~dg~l~a~D~  492 (571)
T 2ad6_A          478 VWYATLDGYLKALDN  492 (571)
T ss_dssp             EEEECTTSEEEEEET
T ss_pred             EEEEcCCCeEEEEEC
Confidence            777889999999985

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.75  E-value=1.5e-05  Score=58.83  Aligned_cols=195  Identities=7%  Similarity=-0.069  Sum_probs=117.1

Q ss_pred             cceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEE-EEecCCeEEEEeCCCCc
Q 040370           20 HNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYV-TASKDGAIRLWDGVSAN   98 (228)
Q Consensus        20 ~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~dg~v~iwd~~~~~   98 (228)
                      ...+|.+..++ .+|+.+. ...|+..++...........     ...+..++|++.++.|+ +-...+.|..+++....
T Consensus        34 d~~~C~~~~~~-~~ll~~~-~~~I~~i~~~g~~~~~~~~~-----~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~  106 (349)
T 3v64_C           34 DRRSCKALGPE-PVLLFAN-RIDIRQVLPHRSEYTLLLNN-----LENAIALDFHHRRELVFWSDVTLDRILRANLNGSN  106 (349)
T ss_dssp             TSSCEEESSSC-CEEEEEC-BSCEEEECTTSCCEEEEECS-----CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred             CCCcccccccC-ceeEeec-ccceEEEeCCCCeeEEeecC-----CCceEEEEEeccccEEEEEeccCCceEEEecCCCC
Confidence            34455555553 3444443 34577777766543332221     34578899997655555 44567889999987655


Q ss_pred             eeeEEecccccceeEEEEECCCC-CEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCC-C
Q 040370           99 CVRSIVGAHGTAEATSANFTKDQ-RFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPS-N  176 (228)
Q Consensus        99 ~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~  176 (228)
                      ....+...  ......+++.+.+ +.+++-...+.|.+.++...........  .......+++.|.+..++.+.... +
T Consensus       107 ~~~~~~~~--~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~--~l~~P~~iavdp~~g~ly~td~~~~~  182 (349)
T 3v64_C          107 VEEVVSTG--LESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQ--SLEKPRAIALHPMEGTIYWTDWGNTP  182 (349)
T ss_dssp             CEEEECSS--CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECT--TCSCEEEEEEETTTTEEEEEECSSSC
T ss_pred             ceEEEeCC--CCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeC--CCCCcceEEEecCcCeEEEeccCCCC
Confidence            43333221  2345678888754 4455555678899999865432222221  223456788888888777777655 7


Q ss_pred             eEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEE-EecCCCCEEEeee
Q 040370          177 EIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFI-TCGTDRSVRFWKE  226 (228)
Q Consensus       177 ~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-s~~~dg~i~vwd~  226 (228)
                      .|..+++.... ...+........+.++++|++..|+ +-...+.|..+++
T Consensus       183 ~I~r~~~dG~~-~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~  232 (349)
T 3v64_C          183 RIEASSMDGSG-RRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANL  232 (349)
T ss_dssp             EEEEEETTSCS-CEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             EEEEEeCCCCC-cEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeC
Confidence            89999876433 3333223345678999998655554 4445566777663

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.75  E-value=1.9e-05  Score=57.46  Aligned_cols=202  Identities=10%  Similarity=0.029  Sum_probs=122.7

Q ss_pred             eecCcceEEEEEeCCCCEEE-EecCCCeEEEEEcccc---eEEeeeccceeeeccceeeEEeCCCC-CeEEEEecCCeEE
Q 040370           16 IQDTHNVRSVSFHPSGDFLL-AGTDHPIAHLYDVNTF---QCYLSANVPEISVNGAINQVRYSSTG-GMYVTASKDGAIR   90 (228)
Q Consensus        16 ~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~vw~~~~~---~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~v~   90 (228)
                      ......+..++|++.+..|+ +-..++.|..+++...   .........  . ......+++.+.+ ++.++-...+.|.
T Consensus        26 ~~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~--~-~~~p~glavd~~~~~ly~~d~~~~~I~  102 (316)
T 1ijq_A           26 IPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISR--D-IQAPDGLAVDWIHSNIYWTDSVLGTVS  102 (316)
T ss_dssp             ECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECS--S-CSCCCEEEEETTTTEEEEEETTTTEEE
T ss_pred             hcCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeC--C-CCCcCEEEEeecCCeEEEEECCCCEEE
Confidence            33455678999998665554 5556789999998751   111111100  0 2345788888644 4445556778999


Q ss_pred             EEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCC--CeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEE
Q 040370           91 LWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKD--STVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFV  168 (228)
Q Consensus        91 iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d--~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (228)
                      +.++........+...  ......++++|.+..|+.+...  +.|...++. +.....+... .-.....+++++++..+
T Consensus       103 ~~~~~g~~~~~~~~~~--~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~d-G~~~~~~~~~-~~~~P~gla~d~~~~~l  178 (316)
T 1ijq_A          103 VADTKGVKRKTLFREN--GSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN-GVDIYSLVTE-NIQWPNGITLDLLSGRL  178 (316)
T ss_dssp             EEETTSSSEEEEEECT--TCCEEEEEEETTTTEEEEEECSSSCEEEEEETT-SCCEEEEECS-SCSCEEEEEEETTTTEE
T ss_pred             EEeCCCCceEEEEECC--CCCcceEEeCCCCCEEEEEccCCCCeEEEEcCC-CCCeEEEEEC-CCCCceEEEEeccCCEE
Confidence            9998754333323221  3456889999966655555432  688888875 3333333211 23345678899888888


Q ss_pred             EEeeCCCCeEEEEEcCCcceeEEeec--CCCCCcEEEEeCCCCcEEEEecCCCCEEEeee
Q 040370          169 LSIDEPSNEIVIWDALTAEKVAKWSS--NHIGAPRWIEHSPAEAAFITCGTDRSVRFWKE  226 (228)
Q Consensus       169 ~~~~~~d~~i~i~d~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~  226 (228)
                      +.+....+.|..+|+.... ...+..  ........+++. .+.++++-...+.|..++.
T Consensus       179 Y~~D~~~~~I~~~d~dg~~-~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~  236 (316)
T 1ijq_A          179 YWVDSKLHSISSIDVNGGN-RKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANR  236 (316)
T ss_dssp             EEEETTTTEEEEEETTSCS-CEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEET
T ss_pred             EEEECCCCeEEEEecCCCc-eEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeC
Confidence            8888777899999986433 233322  123446778775 4566666666777777663

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.74  E-value=2.7e-05  Score=58.59  Aligned_cols=200  Identities=9%  Similarity=0.007  Sum_probs=122.5

Q ss_pred             ecCcceEEEEEeCCCCEEE-EecCCCeEEEEEcccce----EEeeeccceeeeccceeeEEeCC-CCCeEEEEecCCeEE
Q 040370           17 QDTHNVRSVSFHPSGDFLL-AGTDHPIAHLYDVNTFQ----CYLSANVPEISVNGAINQVRYSS-TGGMYVTASKDGAIR   90 (228)
Q Consensus        17 ~~~~~v~~~~~~~~~~~l~-~~~~d~~i~vw~~~~~~----~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~v~   90 (228)
                      .....+..++|++.+..|+ +-...+.|+.+++....    ........    ......+++.+ .+++.++-...+.|.
T Consensus       109 ~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~----~~~p~glavD~~~~~lY~~d~~~~~I~  184 (400)
T 3p5b_L          109 PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRD----IQAPDGLAVDWIHSNIYWTDSVLGTVS  184 (400)
T ss_dssp             CSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSS----CSCEEEEEEETTTTEEEEEETTTTEEE
T ss_pred             cccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCC----CCCcccEEEEecCCceEEEECCCCeEE
Confidence            3456788999998655555 44567788888876522    11111111    34567888887 455555666678999


Q ss_pred             EEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeC--CCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEE
Q 040370           91 LWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGK--DSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFV  168 (228)
Q Consensus        91 iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (228)
                      +.+++.......+...  ......++++|.+.+|+....  .+.|...++... ....+... .-.....+++++.+..+
T Consensus       185 ~~~~~g~~~~~l~~~~--~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~-~~~~~~~~-~l~~P~glavd~~~~~l  260 (400)
T 3p5b_L          185 VADTKGVKRKTLFREN--GSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV-DIYSLVTE-NIQWPNGITLDLLSGRL  260 (400)
T ss_dssp             EECTTTCSEEEEEECS--SCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSC-SCEEEECS-SCSCEEEEEEETTTTEE
T ss_pred             EEeCCCCceEEEEeCC--CCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCC-ccEEEEEC-CCCceEEEEEEeCCCEE
Confidence            9998755443333322  345689999996666655542  367999988643 33333211 22455778899888888


Q ss_pred             EEeeCCCCeEEEEEcCCcceeEEeec-CCCCCcEEEEeCCCCcEEEEecCCCCEEEee
Q 040370          169 LSIDEPSNEIVIWDALTAEKVAKWSS-NHIGAPRWIEHSPAEAAFITCGTDRSVRFWK  225 (228)
Q Consensus       169 ~~~~~~d~~i~i~d~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd  225 (228)
                      +.+....+.|..+|+........... ........+++. .+.++++-...+.|..+|
T Consensus       261 Y~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V~~~~  317 (400)
T 3p5b_L          261 YWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSAN  317 (400)
T ss_dssp             EEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSEEEEE
T ss_pred             EEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeEEEEE
Confidence            88887778999999865433222211 223445677773 445566666667777766

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=98.73  E-value=1.1e-05  Score=61.78  Aligned_cols=160  Identities=13%  Similarity=0.145  Sum_probs=99.8

Q ss_pred             ceEEEEEeC-CCCEEE-EecCCCeEEEEEcccceEEeeeccceeeeccceeeEEe-------CCCCCeEEEEecCC----
Q 040370           21 NVRSVSFHP-SGDFLL-AGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRY-------SSTGGMYVTASKDG----   87 (228)
Q Consensus        21 ~v~~~~~~~-~~~~l~-~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~-------~~~~~~l~~~~~dg----   87 (228)
                      ....|+|+| +...|+ +-...+.|++.|++.+............ ......++|       +++++.|+.+...+    
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~-~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~  218 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIP-TNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGD  218 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSS-CSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGG
T ss_pred             CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccc-cCCCcEEEEeecccccCCCCCEEEEEeCCCCCcc
Confidence            467899998 344444 4444567889998887765544332111 345789999       99998666665443    


Q ss_pred             ---eEEEEeCCC-Ccee-----eEEecccccceeEEEEECCC-CCEEEEeeCCCeEEEEEcc-------CCee-------
Q 040370           88 ---AIRLWDGVS-ANCV-----RSIVGAHGTAEATSANFTKD-QRFVLSCGKDSTVKLWEVS-------SGRL-------  143 (228)
Q Consensus        88 ---~v~iwd~~~-~~~~-----~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~d~~i~~wd~~-------~~~~-------  143 (228)
                         .|.+.+... +...     ..+..   ......++++|+ +.++++-..++.|..+|+.       ++..       
T Consensus       219 ~~~~V~~i~r~~~G~~~~~~~~~~v~~---~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~  295 (496)
T 3kya_A          219 ESPSVYIIKRNADGTFDDRSDIQLIAA---YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKN  295 (496)
T ss_dssp             GEEEEEEEECCTTSCCSTTSCEEEEEE---ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGG
T ss_pred             cCceEEEEecCCCCceeecccceeecc---CCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccc
Confidence               266665333 2221     22222   223457788994 5555566677889999997       4543       


Q ss_pred             ----EEEEecceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcC
Q 040370          144 ----VKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDAL  184 (228)
Q Consensus       144 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~  184 (228)
                          ...+...........++++|++..++.+......|+.++..
T Consensus       296 ~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~d  340 (496)
T 3kya_A          296 NPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYD  340 (496)
T ss_dssp             CTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred             cccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecC
Confidence                11221111233457899999999877777767899996653

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.73  E-value=7.8e-06  Score=56.58  Aligned_cols=152  Identities=9%  Similarity=0.031  Sum_probs=100.9

Q ss_pred             ccceeeEEeCCCCCeEEEEecCC--eEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCe
Q 040370           65 NGAINQVRYSSTGGMYVTASKDG--AIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGR  142 (228)
Q Consensus        65 ~~~i~~~~~~~~~~~l~~~~~dg--~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~  142 (228)
                      ......+.|++ +.++.+.+.+|  .|+.+|+.+++....+.... ...-..+++. .++.......++.+.+||..+.+
T Consensus        20 ~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~-~~fgeGi~~~-~~~ly~ltw~~~~v~v~D~~tl~   96 (243)
T 3mbr_X           20 TAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPP-PYFGAGIVAW-RDRLIQLTWRNHEGFVYDLATLT   96 (243)
T ss_dssp             TCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCT-TCCEEEEEEE-TTEEEEEESSSSEEEEEETTTTE
T ss_pred             ccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCC-CcceeEEEEe-CCEEEEEEeeCCEEEEEECCcCc
Confidence            44567889986 55666666654  89999999999998887642 1111234443 23444455678999999999999


Q ss_pred             eEEEEecceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecC-CC---CCcEEEEeCCCCcEEEEecCC
Q 040370          143 LVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSN-HI---GAPRWIEHSPAEAAFITCGTD  218 (228)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~-~~---~~v~~~~~~~~~~~l~s~~~d  218 (228)
                      .+.++.....   ...++  +++..++++.+ ++.|.++|..+.+...++... +.   ..++.+.+. +|+..+..-.+
T Consensus        97 ~~~ti~~~~~---Gwglt--~dg~~L~vSdg-s~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~s  169 (243)
T 3mbr_X           97 PRARFRYPGE---GWALT--SDDSHLYMSDG-TAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVWLT  169 (243)
T ss_dssp             EEEEEECSSC---CCEEE--ECSSCEEEECS-SSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTT
T ss_pred             EEEEEeCCCC---ceEEe--eCCCEEEEECC-CCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEECCC
Confidence            9999875422   23333  45677777766 689999999999888776432 11   234556654 56655555456


Q ss_pred             CCEEEeee
Q 040370          219 RSVRFWKE  226 (228)
Q Consensus       219 g~i~vwd~  226 (228)
                      ..|.+-|.
T Consensus       170 ~~I~vIDp  177 (243)
T 3mbr_X          170 SRIARIDP  177 (243)
T ss_dssp             TEEEEECT
T ss_pred             CeEEEEEC
Confidence            66666654

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.71  E-value=2.6e-05  Score=56.73  Aligned_cols=198  Identities=9%  Similarity=-0.015  Sum_probs=122.1

Q ss_pred             cceEEEEEeCCCC-EEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCC-CCeEEEEecCCeEEEEeCCCC
Q 040370           20 HNVRSVSFHPSGD-FLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSST-GGMYVTASKDGAIRLWDGVSA   97 (228)
Q Consensus        20 ~~v~~~~~~~~~~-~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~v~iwd~~~~   97 (228)
                      ....+++|++.+. .+.+-...+.|..+++...........  .. -.....+++.+. ++++++-...+.|.+.++...
T Consensus        35 ~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~--~~-l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~  111 (318)
T 3sov_A           35 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVV--SG-LLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGS  111 (318)
T ss_dssp             EEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEE--EC-CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             CccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEc--CC-CCCccEEEEEcCCCeEEEEECCCCEEEEEECCCC
Confidence            4567899998544 445556678898998876531111100  01 234677888874 455555566789999998644


Q ss_pred             ceeeEEecccccceeEEEEECCCCCEEEEee--CCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCC
Q 040370           98 NCVRSIVGAHGTAEATSANFTKDQRFVLSCG--KDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPS  175 (228)
Q Consensus        98 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  175 (228)
                      . ...+.... ......+++.|.+..|+.+.  ..+.|...++.. .....+... .-.....+++++++..++.+....
T Consensus       112 ~-~~~l~~~~-~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG-~~~~~~~~~-~l~~Pnglavd~~~~~lY~aD~~~  187 (318)
T 3sov_A          112 L-RKVLFWQE-LDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDG-SSRFIIINS-EIYWPNGLTLDYEEQKLYWADAKL  187 (318)
T ss_dssp             S-CEEEECSS-CSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTS-CSCEEEECS-SCSCEEEEEEETTTTEEEEEETTT
T ss_pred             c-EEEEEeCC-CCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCC-CCeEEEEEC-CCCCccEEEEeccCCEEEEEECCC
Confidence            3 33332211 34568899998666665554  357888888753 333333211 223456889999888888888878


Q ss_pred             CeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeee
Q 040370          176 NEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKE  226 (228)
Q Consensus       176 ~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~  226 (228)
                      +.|..+|+.... ...+..........+++. .+.++++-...+.|..++.
T Consensus       188 ~~I~~~d~dG~~-~~~~~~~~~~~P~glav~-~~~lywtd~~~~~V~~~~~  236 (318)
T 3sov_A          188 NFIHKSNLDGTN-RQAVVKGSLPHPFALTLF-EDILYWTDWSTHSILACNK  236 (318)
T ss_dssp             TEEEEEETTSCS-CEEEECSCCSCEEEEEEE-TTEEEEEETTTTEEEEEET
T ss_pred             CEEEEEcCCCCc-eEEEecCCCCCceEEEEe-CCEEEEEecCCCeEEEEEC
Confidence            999999986433 333323344556777775 3455555556677776664

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.68  E-value=7.4e-06  Score=64.70  Aligned_cols=183  Identities=10%  Similarity=0.080  Sum_probs=111.5

Q ss_pred             EEEEeCCCCEEEEecCC----------------CeEEEEEcccceEEeeeccceee------eccceeeEEeC-CCC---
Q 040370           24 SVSFHPSGDFLLAGTDH----------------PIAHLYDVNTFQCYLSANVPEIS------VNGAINQVRYS-STG---   77 (228)
Q Consensus        24 ~~~~~~~~~~l~~~~~d----------------~~i~vw~~~~~~~~~~~~~~~~~------~~~~i~~~~~~-~~~---   77 (228)
                      .+++.++...++.+..+                +.|..+|.++|+.+..++.....      ...++. +... .+|   
T Consensus       245 ~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~  323 (599)
T 1w6s_A          245 WYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKAR  323 (599)
T ss_dssp             CCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEE
T ss_pred             ceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcEE
Confidence            35666777777777655                38999999999988776653110      011121 2222 456   


Q ss_pred             CeEEEEecCCeEEEEeCCCCceeeEEeccc-----------cccee--------------------------EEEEECCC
Q 040370           78 GMYVTASKDGAIRLWDGVSANCVRSIVGAH-----------GTAEA--------------------------TSANFTKD  120 (228)
Q Consensus        78 ~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~-----------~~~~i--------------------------~~~~~~~~  120 (228)
                      ..++.++.+|.+.+.|.++++.+.......           ...++                          ..++++|+
T Consensus       324 ~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~  403 (599)
T 1w6s_A          324 KLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPK  403 (599)
T ss_dssp             EEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETT
T ss_pred             EEEEEECCCcEEEEEECCCCCEeecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCC
Confidence            467778999999999999999876654321           01111                          23456666


Q ss_pred             CCEEEEe---------------------------------e------CCCeEEEEEccCCeeEEEEecceeeeeeeEEEE
Q 040370          121 QRFVLSC---------------------------------G------KDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVF  161 (228)
Q Consensus       121 ~~~l~~~---------------------------------~------~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~  161 (228)
                      ..++++.                                 +      .+|.+.-||+.+++.+-+.....   ....-..
T Consensus       404 ~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~~---~~~~g~~  480 (599)
T 1w6s_A          404 RELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMERF---AVWGGTM  480 (599)
T ss_dssp             TTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEESS---CCCSBCE
T ss_pred             CCEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCCC---CccCcce
Confidence            5554432                                 1      34789999999998877664211   1111111


Q ss_pred             CCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcE
Q 040370          162 NDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAA  211 (228)
Q Consensus       162 ~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  211 (228)
                      ...+..++.+ ..|+.++.||.++|+.+-++..+......-+.+..+|++
T Consensus       481 ~tagg~vf~g-t~dg~l~A~D~~tG~~lW~~~l~~g~~~~P~~y~~~G~q  529 (599)
T 1w6s_A          481 ATAGDLVFYG-TLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQ  529 (599)
T ss_dssp             EETTTEEEEE-CTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred             EecCCEEEEE-CCCCeEEEEECCCCCEEEEeeCCCCcEeccEEEEeCCEE
Confidence            1245566664 458999999999999998874433222233455557764

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.66  E-value=1.1e-05  Score=63.68  Aligned_cols=137  Identities=9%  Similarity=0.016  Sum_probs=86.0

Q ss_pred             CeEEEEeCCCCceeeEEeccccc--------ceeEEEEEC-CCCC---EEEEeeCCCeEEEEEccCCeeEEEEecceee-
Q 040370           87 GAIRLWDGVSANCVRSIVGAHGT--------AEATSANFT-KDQR---FVLSCGKDSTVKLWEVSSGRLVKQYLGATHT-  153 (228)
Q Consensus        87 g~v~iwd~~~~~~~~~~~~~~~~--------~~i~~~~~~-~~~~---~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~-  153 (228)
                      +.|.-+|.++++.+-.++..++.        .++. +... .+++   .++.++.+|.++++|.++++.+..+...... 
T Consensus       291 ~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~  369 (582)
T 1flg_A          291 SGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNIT  369 (582)
T ss_dssp             SEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCC
T ss_pred             ceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCcc
Confidence            68999999999998887653221        1222 2222 4563   7888999999999999999987765432100 


Q ss_pred             ----------eee--------------------------------eEEEECCCCcEEEEee-------------------
Q 040370          154 ----------QLR--------------------------------FQAVFNDTEEFVLSID-------------------  172 (228)
Q Consensus       154 ----------~~~--------------------------------~~~~~~~~~~~~~~~~-------------------  172 (228)
                                ..+                                ..++++|....+++..                   
T Consensus       370 ~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~  449 (582)
T 1flg_A          370 WASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSA  449 (582)
T ss_dssp             SEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSC
T ss_pred             ccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCc
Confidence                      000                                0234455544444321                   


Q ss_pred             -------------CCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeee
Q 040370          173 -------------EPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKE  226 (228)
Q Consensus       173 -------------~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~  226 (228)
                                   ..+|.|..||+.+++.+-+.....  ++..-.....+.+++.++.||.++.||.
T Consensus       450 ~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~--~~~~g~~~tagglvf~g~~dg~l~A~D~  514 (582)
T 1flg_A          450 YLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHL--PLWAGVLATAGNLVFTGTGDGYFKAFDA  514 (582)
T ss_dssp             CCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESS--CCCSCCEEETTTEEEEECTTSEEEEEET
T ss_pred             eeccceeecCCCCCCcceEEEEECCCCCEEEEecCCC--CCcccceEeCCCEEEEECCCCcEEEEEC
Confidence                         125889999999999887663322  2221111224667788999999999985

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=98.66  E-value=2.9e-05  Score=56.62  Aligned_cols=169  Identities=12%  Similarity=0.186  Sum_probs=106.5

Q ss_pred             cceEEEEEeCC----CC---EEEEec-C--CCeEEEEEcc--cceEEeeecc---ceeeeccceeeEEe--CCC-CC-eE
Q 040370           20 HNVRSVSFHPS----GD---FLLAGT-D--HPIAHLYDVN--TFQCYLSANV---PEISVNGAINQVRY--SST-GG-MY   80 (228)
Q Consensus        20 ~~v~~~~~~~~----~~---~l~~~~-~--d~~i~vw~~~--~~~~~~~~~~---~~~~~~~~i~~~~~--~~~-~~-~l   80 (228)
                      +.++.+..-|+    ++   ++++.. .  +++|.+|++.  +++ +.....   +...-...+..+++  +|. ++ ++
T Consensus        68 g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~ya  146 (355)
T 3amr_A           68 GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYA  146 (355)
T ss_dssp             SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEE
T ss_pred             CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-eeeccccccCcCCCCCCeeEEEEEecCCCCcEEE
Confidence            56777777663    22   233333 3  5799999774  333 222211   11110156777887  774 44 68


Q ss_pred             EEEecCCeEEEEeCC-------CCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEcc-----CCeeEEEEe
Q 040370           81 VTASKDGAIRLWDGV-------SANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVS-----SGRLVKQYL  148 (228)
Q Consensus        81 ~~~~~dg~v~iwd~~-------~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~-----~~~~~~~~~  148 (228)
                      ++..++|.+..|++.       +.+.++++..   ...+..+...+....|+.+-++..|..+|.+     +++.+..+.
T Consensus       147 fV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l---gsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~  223 (355)
T 3amr_A          147 MVTGKEGEFEQYELKADKNGYISGKKVRAFKM---NSQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRAD  223 (355)
T ss_dssp             EEECSSSEEEEEEEEECTTSCEEEEEEEEEEC---SSCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBS
T ss_pred             EEECCCCeEEEEEEEeCCCCcccceEEEEecC---CCCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEec
Confidence            888899999999883       3355677766   4567888899988899999999888888855     344444432


Q ss_pred             cceeeeeeeEEEE--CCCCc-EEEEeeCCCCeEEEEEcC-CcceeEEe
Q 040370          149 GATHTQLRFQAVF--NDTEE-FVLSIDEPSNEIVIWDAL-TAEKVAKW  192 (228)
Q Consensus       149 ~~~~~~~~~~~~~--~~~~~-~~~~~~~~d~~i~i~d~~-~~~~~~~~  192 (228)
                      ...-...+..+..  .++++ ++++++..++...+||.. +.+.+..+
T Consensus       224 ~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~f  271 (355)
T 3amr_A          224 GRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVADF  271 (355)
T ss_dssp             SSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEE
T ss_pred             CCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEEE
Confidence            2111112333433  45555 888888768999999986 55666665

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.65  E-value=2.1e-06  Score=69.82  Aligned_cols=154  Identities=9%  Similarity=0.028  Sum_probs=95.4

Q ss_pred             ceeeEEeC-CCCCeEEEEec-CC----eEEEEeCCCC-ceeeEEecccccceeEEEEECCCCCEEEEeeCC-----CeEE
Q 040370           67 AINQVRYS-STGGMYVTASK-DG----AIRLWDGVSA-NCVRSIVGAHGTAEATSANFTKDQRFVLSCGKD-----STVK  134 (228)
Q Consensus        67 ~i~~~~~~-~~~~~l~~~~~-dg----~v~iwd~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----~~i~  134 (228)
                      .+....|| |||++|+.+.. +|    .|+++|+.++ +.+....    ......+.|+||++.|+....|     ..|+
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~----~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~  250 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKV----SGTNGEIVWGPDHTSLFYVTKDETLRENKVW  250 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCE----EEECSCCEECSSTTEEEEEEECTTCCEEEEE
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCccc----cCceeeEEEecCCCEEEEEEECCCCCCCEEE
Confidence            56788999 99998875543 33    5999999988 6321100    1123468899999888877665     3688


Q ss_pred             EEEccCCee--EEEEecceeeeeeeEEEECCCCcEEEEeeC--CCCeEEEEEcCCcc-ee--EEeecCCCCCcEEEEeCC
Q 040370          135 LWEVSSGRL--VKQYLGATHTQLRFQAVFNDTEEFVLSIDE--PSNEIVIWDALTAE-KV--AKWSSNHIGAPRWIEHSP  207 (228)
Q Consensus       135 ~wd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~d~~i~i~d~~~~~-~~--~~~~~~~~~~v~~~~~~~  207 (228)
                      ++++.+++.  ...+... .......+.++|++++++....  ....|+++|+.++. ..  ..+.....+...++.|+.
T Consensus       251 ~~~lgt~~~~~~lv~~~~-~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~  329 (751)
T 2xe4_A          251 RHVMGKLQSEDVCLYEEH-NPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHG  329 (751)
T ss_dssp             EEETTSCGGGCEEEEECC-CTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEET
T ss_pred             EEECCCCchhcEEEEecC-CCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeee
Confidence            888877542  2222221 2234567889999998887653  23578888988763 22  333234445666666655


Q ss_pred             CCcEEEEecCC--CCEEEee
Q 040370          208 AEAAFITCGTD--RSVRFWK  225 (228)
Q Consensus       208 ~~~~l~s~~~d--g~i~vwd  225 (228)
                      .+.+++.+..+  +..+||.
T Consensus       330 g~~l~~~t~~~~a~~~~L~~  349 (751)
T 2xe4_A          330 TSHLVILTNEGGAVNHKLLI  349 (751)
T ss_dssp             TTEEEEEECTTTCTTCEEEE
T ss_pred             CCEEEEEeCCCCCCCcEEEE
Confidence            55555555544  3444443

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.64  E-value=9e-06  Score=65.17  Aligned_cols=213  Identities=11%  Similarity=0.049  Sum_probs=118.7

Q ss_pred             CcCCccccceeEEEee-cCcceEEEEEeCCCCEEEEecC-CCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCe
Q 040370            2 FDFSKATAKRAFRVIQ-DTHNVRSVSFHPSGDFLLAGTD-HPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGM   79 (228)
Q Consensus         2 wd~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~-d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~   79 (228)
                      ||....+..+...... +.....++++.++++.++.|+. +..+.+||..+.+-......+.   ...-.+++..++++.
T Consensus       224 yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~---~R~~~s~~~~~dg~i  300 (656)
T 1k3i_A          224 WDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQV---ARGYQSSATMSDGRV  300 (656)
T ss_dssp             ECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSS---CCSSCEEEECTTSCE
T ss_pred             EeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCc---cccccceEEecCCeE
Confidence            4555444444333322 2233345677789999999884 5689999998876543332221   112234566678998


Q ss_pred             EEEEe-cC-----CeEEEEeCCCCceeeE-------Eecc------------------cc--------------------
Q 040370           80 YVTAS-KD-----GAIRLWDGVSANCVRS-------IVGA------------------HG--------------------  108 (228)
Q Consensus        80 l~~~~-~d-----g~v~iwd~~~~~~~~~-------~~~~------------------~~--------------------  108 (228)
                      ++.|+ .+     ..+.+||..+++....       +...                  ..                    
T Consensus       301 yv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~  380 (656)
T 1k3i_A          301 FTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSG  380 (656)
T ss_dssp             EEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTC
T ss_pred             EEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcc
Confidence            88888 34     5689999876543221       0000                  00                    


Q ss_pred             -----------------cceeEEEEEC-CCCCEEEEeeCCC-----------eEEEEEccCCeeEEEE-ecceeeeeeeE
Q 040370          109 -----------------TAEATSANFT-KDQRFVLSCGKDS-----------TVKLWEVSSGRLVKQY-LGATHTQLRFQ  158 (228)
Q Consensus       109 -----------------~~~i~~~~~~-~~~~~l~~~~~d~-----------~i~~wd~~~~~~~~~~-~~~~~~~~~~~  158 (228)
                                       ...-.++.|. .+++.++.|+.++           .+.+||..+.+..... ...........
T Consensus       381 w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~  460 (656)
T 1k3i_A          381 DVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHT  460 (656)
T ss_dssp             EEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCE
T ss_pred             eeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCC
Confidence                             0011223332 2677777877542           6778888776544332 01111222234


Q ss_pred             EEECCCCcEEEEeeCCC----------CeEEEEEcCCcceeEEee-cCCCCCcEEEEeCCCCcEEEEecC
Q 040370          159 AVFNDTEEFVLSIDEPS----------NEIVIWDALTAEKVAKWS-SNHIGAPRWIEHSPAEAAFITCGT  217 (228)
Q Consensus       159 ~~~~~~~~~~~~~~~~d----------~~i~i~d~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~s~~~  217 (228)
                      ++..|+++.++.+|..+          ..+.+||..+.+-...-. ...........+.|+++.++.||.
T Consensus       461 ~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~  530 (656)
T 1k3i_A          461 SVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG  530 (656)
T ss_dssp             EEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred             eEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCceeecCCCCCccccccHhhcCCCcEEEecCCC
Confidence            45667888888776431          468999987755322111 111222334556789999999985

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.64  E-value=5.2e-05  Score=62.16  Aligned_cols=197  Identities=8%  Similarity=0.020  Sum_probs=124.8

Q ss_pred             CcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccc-----eeeeccceeeEEeCCCCCeEEEEecCCeEEEEe
Q 040370           19 THNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVP-----EISVNGAINQVRYSSTGGMYVTASKDGAIRLWD   93 (228)
Q Consensus        19 ~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~-----~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd   93 (228)
                      ...|.++...+++. |..|+.++-|..|+..+++........     ... ...|.++...++++.|..|+.++-|..+|
T Consensus       356 ~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~-~~~v~~i~~d~~g~~lWigt~~~Gl~~~d  433 (795)
T 4a2l_A          356 DNVVSCIVEDKDKN-LWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIG-SNNIKAVYVDEKKSLVYIGTHAGGLSILH  433 (795)
T ss_dssp             CSSEEEEEECTTSC-EEEEESSSCEEEECTTTCCEEEECCC------CCS-CSCEEEEEEETTTTEEEEEETTTEEEEEE
T ss_pred             CCeeEEEEECCCCC-EEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCC-CccEEEEEEcCCCCEEEEEeCcCceeEEe
Confidence            34689998888776 445777767889998876543322111     011 45788998888887567777777899999


Q ss_pred             CCCCceeeEEecc--cccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEec----ceeeeeeeEEEECCCCcE
Q 040370           94 GVSANCVRSIVGA--HGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLG----ATHTQLRFQAVFNDTEEF  167 (228)
Q Consensus        94 ~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~  167 (228)
                      .++++........  .....|.++...+++...+. +.+ -+..||..+++.......    ......+.++...+++..
T Consensus       434 ~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwig-t~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~l  511 (795)
T 4a2l_A          434 RNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLG-TLS-ALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRL  511 (795)
T ss_dssp             TTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEE-ESS-CEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCE
T ss_pred             CCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEE-ecC-ceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCE
Confidence            8876543322100  11357889988888775544 444 588999887654332211    112245677778888877


Q ss_pred             EEEeeCCCCeEEEEEcCCcceeEEee------cCCCCCcEEEEeCCCCcEEEEecCCCCEEEeee
Q 040370          168 VLSIDEPSNEIVIWDALTAEKVAKWS------SNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKE  226 (228)
Q Consensus       168 ~~~~~~~d~~i~i~d~~~~~~~~~~~------~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~  226 (228)
                      .+.+.   +.+..||..+++.  .+.      ......|.++...++|.+.++.. . .+..||.
T Consensus       512 Wigt~---~Gl~~~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~-~-Gl~~~d~  569 (795)
T 4a2l_A          512 WIGGE---EGLSVFKQEGLDI--QKASILPVSNVTKLFTNCIYEASNGIIWVGTR-E-GFYCFNE  569 (795)
T ss_dssp             EEEES---SCEEEEEEETTEE--EECCCSCSCGGGGSCEEEEEECTTSCEEEEES-S-CEEEEET
T ss_pred             EEEeC---CceEEEeCCCCeE--EEecCCCCCCCCCCeeEEEEECCCCCEEEEeC-C-CceeECC
Confidence            66653   4588899876654  221      12335688999988888666544 3 4666653

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.63  E-value=6.6e-05  Score=57.06  Aligned_cols=204  Identities=12%  Similarity=0.118  Sum_probs=115.1

Q ss_pred             ecCcceEEEEEeCCCCEEEEecCC---Ce-EEEEEcccceEEeeeccceeeeccceeeEEeCC-CCCeEEEEecCCeEEE
Q 040370           17 QDTHNVRSVSFHPSGDFLLAGTDH---PI-AHLYDVNTFQCYLSANVPEISVNGAINQVRYSS-TGGMYVTASKDGAIRL   91 (228)
Q Consensus        17 ~~~~~v~~~~~~~~~~~l~~~~~d---~~-i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~v~i   91 (228)
                      ........++++++++++++....   .. +...+...+.. .....  .. ......++++| ++.++++-..++.|+.
T Consensus       179 ~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~~-~~~~~--~~-~~~P~giavd~~~G~lyv~d~~~~~V~~  254 (433)
T 4hw6_A          179 TNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGFT-ERLSL--CN-ARGAKTCAVHPQNGKIYYTRYHHAMISS  254 (433)
T ss_dssp             CCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTTC-CEEEE--EE-CSSBCCCEECTTTCCEEECBTTCSEEEE
T ss_pred             cCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCee-ccccc--cc-cCCCCEEEEeCCCCeEEEEECCCCEEEE
Confidence            344568899999999944443311   12 33333222111 00000  01 34467789999 6766666667788999


Q ss_pred             EeCCCCceeeEEecccccceeEEEEECCCCCEEEEe-eCCCeEEEEEcc--CCee--EEEEecc-e------------ee
Q 040370           92 WDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSC-GKDSTVKLWEVS--SGRL--VKQYLGA-T------------HT  153 (228)
Q Consensus        92 wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~d~~i~~wd~~--~~~~--~~~~~~~-~------------~~  153 (228)
                      +|..++.....+........-..++|+|++++|+.+ ...+.|+.+++.  ++..  ...+.+. .            .-
T Consensus       255 ~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~  334 (433)
T 4hw6_A          255 YDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARL  334 (433)
T ss_dssp             ECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBC
T ss_pred             EECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEE
Confidence            998877663333222112233579999999855544 456789998865  2221  1122111 0            01


Q ss_pred             eeeeEEEE---------CCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecC----------------CCCCcEEEEeC-C
Q 040370          154 QLRFQAVF---------NDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSN----------------HIGAPRWIEHS-P  207 (228)
Q Consensus       154 ~~~~~~~~---------~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~----------------~~~~v~~~~~~-~  207 (228)
                      .....+++         .+++. ++++....+.|+.++. ++......-.+                .-.....|+++ +
T Consensus       335 ~~P~giav~~n~~y~~dd~~g~-lyvaD~~n~~I~~~~~-~G~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~  412 (433)
T 4hw6_A          335 WGPNQGIFVKNEAYAGEEDEYD-FYFCDRDSHTVRVLTP-EGRVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMK  412 (433)
T ss_dssp             SSEEEEEEEECGGGTTSSCCEE-EEEEETTTTEEEEECT-TSEEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETT
T ss_pred             cCCccEEEEccccccccCCCCc-EEEEECCCCEEEEECC-CCCEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECC
Confidence            12345666         44444 4555665789999984 45332222111                11236789999 6


Q ss_pred             CCcEEEEecCCCCEEEeee
Q 040370          208 AEAAFITCGTDRSVRFWKE  226 (228)
Q Consensus       208 ~~~~l~s~~~dg~i~vwd~  226 (228)
                      ++.++++=..+++|+..++
T Consensus       413 ~g~lyVaD~~n~rIr~i~~  431 (433)
T 4hw6_A          413 RKCFYIGDCDNHRVRKIAP  431 (433)
T ss_dssp             TTEEEEEEGGGTEEEEEEE
T ss_pred             CCEEEEEeCCCCEEEEEec
Confidence            7777777677788888775

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.62  E-value=0.0001  Score=60.40  Aligned_cols=195  Identities=7%  Similarity=0.046  Sum_probs=122.8

Q ss_pred             CcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCCCc
Q 040370           19 THNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSAN   98 (228)
Q Consensus        19 ~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~   98 (228)
                      ...|.++...++++.|..|+.++-|..+|.++++..........-....|.++...+++++.+. +.+ -+.+||..+++
T Consensus       405 ~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwig-t~~-Gl~~~~~~~~~  482 (795)
T 4a2l_A          405 SNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLG-TLS-ALVRFNPEQRS  482 (795)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEE-ESS-CEEEEETTTTE
T ss_pred             CccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEE-ecC-ceeEEeCCCCe
Confidence            3578999988888756677777779999988876443322110011457899999888875554 444 58889987765


Q ss_pred             eeeEEec----ccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEec-----ceeeeeeeEEEECCCCcEEE
Q 040370           99 CVRSIVG----AHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLG-----ATHTQLRFQAVFNDTEEFVL  169 (228)
Q Consensus        99 ~~~~~~~----~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~  169 (228)
                      .......    ......|.++...+++...+.. . +-+..||..+++.  .+..     ......+.++...+++...+
T Consensus       483 ~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt-~-~Gl~~~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~lWi  558 (795)
T 4a2l_A          483 FTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGG-E-EGLSVFKQEGLDI--QKASILPVSNVTKLFTNCIYEASNGIIWV  558 (795)
T ss_dssp             EEECCBCTTCCBCCCCCEEEEEECTTCCEEEEE-S-SCEEEEEEETTEE--EECCCSCSCGGGGSCEEEEEECTTSCEEE
T ss_pred             EEEccccccccccCCceEEEEEECCCCCEEEEe-C-CceEEEeCCCCeE--EEecCCCCCCCCCCeeEEEEECCCCCEEE
Confidence            4322111    1113568899888888755544 4 4588999887665  2221     11234567777788888766


Q ss_pred             EeeCCCCeEEEEEcCCcceeEEeec--C-CCCCcEEEEeCCCCcEEEEecCCCCEEEee
Q 040370          170 SIDEPSNEIVIWDALTAEKVAKWSS--N-HIGAPRWIEHSPAEAAFITCGTDRSVRFWK  225 (228)
Q Consensus       170 ~~~~~d~~i~i~d~~~~~~~~~~~~--~-~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd  225 (228)
                      ++.   +.+..||..+++.. .+..  + ....|.++...++|.+.+++ ..| |..|+
T Consensus       559 gT~---~Gl~~~d~~~~~~~-~~~~~~gl~~~~i~~i~~d~~g~lWi~t-~~G-l~~~~  611 (795)
T 4a2l_A          559 GTR---EGFYCFNEKDKQIK-RYNTTNGLPNNVVYGILEDSFGRLWLST-NRG-ISCFN  611 (795)
T ss_dssp             EES---SCEEEEETTTTEEE-EECGGGTCSCSCEEEEEECTTSCEEEEE-TTE-EEEEE
T ss_pred             EeC---CCceeECCCCCcEE-EeCCCCCCchhheEEEEECCCCCEEEEc-CCc-eEEEc
Confidence            543   36888997765433 2211  1 23468889888888876665 333 55555

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.62  E-value=4.9e-05  Score=54.93  Aligned_cols=189  Identities=12%  Similarity=0.028  Sum_probs=107.8

Q ss_pred             ecCcceEEEEEeCCCCEEEEecCC--CeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeC
Q 040370           17 QDTHNVRSVSFHPSGDFLLAGTDH--PIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDG   94 (228)
Q Consensus        17 ~~~~~v~~~~~~~~~~~l~~~~~d--~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~   94 (228)
                      ........+++.++++++++....  ..|..++..+++.........   ......++..+++..+++-..++.|..+|.
T Consensus        69 ~~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~---~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~  145 (306)
T 2p4o_A           69 TVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPD---AIFLNGITPLSDTQYLTADSYRGAIWLIDV  145 (306)
T ss_dssp             ECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTT---CSCEEEEEESSSSEEEEEETTTTEEEEEET
T ss_pred             eCCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEEEeCCC---ccccCcccccCCCcEEEEECCCCeEEEEeC
Confidence            334578899999999866655332  246677777776543222211   122344455555555555556889999998


Q ss_pred             CCCce-eeEEec-------ccccceeEEEEECCCCCEEEEe-eCCCeEEEEEccC-Cee--EEEEecceeeeeeeEEEEC
Q 040370           95 VSANC-VRSIVG-------AHGTAEATSANFTKDQRFVLSC-GKDSTVKLWEVSS-GRL--VKQYLGATHTQLRFQAVFN  162 (228)
Q Consensus        95 ~~~~~-~~~~~~-------~~~~~~i~~~~~~~~~~~l~~~-~~d~~i~~wd~~~-~~~--~~~~~~~~~~~~~~~~~~~  162 (228)
                      .+++. +.....       ...-.....+  +++++.|+.+ ...+.|..+|+.. ++.  ...+.   .......+++.
T Consensus       146 ~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~---~~~~P~gi~vd  220 (306)
T 2p4o_A          146 VQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFV---EQTNIDDFAFD  220 (306)
T ss_dssp             TTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEE---ESCCCSSEEEB
T ss_pred             CCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEe---ccCCCCCeEEC
Confidence            65431 111100       0001233445  7777765544 4567899999874 322  11111   11234567888


Q ss_pred             CCCcEEEEeeCCCCeEEEEEcCCcceeE--EeecCCCCCcEEEEeC---CCCcEEEEec
Q 040370          163 DTEEFVLSIDEPSNEIVIWDALTAEKVA--KWSSNHIGAPRWIEHS---PAEAAFITCG  216 (228)
Q Consensus       163 ~~~~~~~~~~~~d~~i~i~d~~~~~~~~--~~~~~~~~~v~~~~~~---~~~~~l~s~~  216 (228)
                      +++...++ ....+.|.++|.. ++...  .. ......+++++|.   |+++.|+.++
T Consensus       221 ~dG~l~va-~~~~~~V~~~~~~-G~~~~~~~~-~~~~~~p~~~a~~g~~~d~~~LyVt~  276 (306)
T 2p4o_A          221 VEGNLYGA-THIYNSVVRIAPD-RSTTIIAQA-EQGVIGSTAVAFGQTEGDCTAIYVVT  276 (306)
T ss_dssp             TTCCEEEE-CBTTCCEEEECTT-CCEEEEECG-GGTCTTEEEEEECCSTTTTTEEEEEE
T ss_pred             CCCCEEEE-eCCCCeEEEECCC-CCEEEEeec-ccccCCceEEEEecccCCCCEEEEEC
Confidence            88876555 4445889999964 55432  22 2223568999998   8876665544

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.61  E-value=5.6e-05  Score=54.94  Aligned_cols=184  Identities=7%  Similarity=-0.054  Sum_probs=108.9

Q ss_pred             EEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEE-EEecCCeEEEEeCCCC---ceeeEEecccc
Q 040370           33 FLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYV-TASKDGAIRLWDGVSA---NCVRSIVGAHG  108 (228)
Q Consensus        33 ~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~dg~v~iwd~~~~---~~~~~~~~~~~  108 (228)
                      +|+.+.. ..|+..|+...+.......     ...+..++|++.++.|+ +-..++.|..+++...   .....+... .
T Consensus         3 ~ll~~~~-~~I~~i~~~~~~~~~~~~~-----~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~-~   75 (316)
T 1ijq_A            3 YLFFTNR-HEVRKMTLDRSEYTSLIPN-----LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISR-D   75 (316)
T ss_dssp             EEEEECB-SSEEEEETTSCCCEEEECS-----CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECS-S
T ss_pred             EEEEECC-CeEEEEECCCcceEehhcC-----CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeC-C
Confidence            3444443 4588889887654333221     34578899998655444 5556689999998751   222222211 1


Q ss_pred             cceeEEEEECCCC-CEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCC-CeEEEEEcCCc
Q 040370          109 TAEATSANFTKDQ-RFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPS-NEIVIWDALTA  186 (228)
Q Consensus       109 ~~~i~~~~~~~~~-~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~i~i~d~~~~  186 (228)
                      -.....+++.+.+ +.+++-...+.|.+.|+...........  .......+++.|.+..++.+.... +.|...++. +
T Consensus        76 ~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~--~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~d-G  152 (316)
T 1ijq_A           76 IQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRE--NGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN-G  152 (316)
T ss_dssp             CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEEC--TTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT-S
T ss_pred             CCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEEC--CCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCC-C
Confidence            2345788888744 4445556678999999865332222221  123446778888777777666533 788888875 3


Q ss_pred             ceeEEeecCCCCCcEEEEeCCCCcEEE-EecCCCCEEEeee
Q 040370          187 EKVAKWSSNHIGAPRWIEHSPAEAAFI-TCGTDRSVRFWKE  226 (228)
Q Consensus       187 ~~~~~~~~~~~~~v~~~~~~~~~~~l~-s~~~dg~i~vwd~  226 (228)
                      .....+........+.++++|++..|+ +-+..+.|..+|+
T Consensus       153 ~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~  193 (316)
T 1ijq_A          153 VDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDV  193 (316)
T ss_dssp             CCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             CCeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEec
Confidence            333333233345678999998765554 4445567777764

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.60  E-value=2.4e-05  Score=58.60  Aligned_cols=191  Identities=7%  Similarity=-0.064  Sum_probs=113.7

Q ss_pred             EEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEE-EEecCCeEEEEeCCCCceeeE
Q 040370           24 SVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYV-TASKDGAIRLWDGVSANCVRS  102 (228)
Q Consensus        24 ~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~dg~v~iwd~~~~~~~~~  102 (228)
                      |.+..+ ..+|+.+. ...|+..++...........     ...+..++|++.++.|+ +-...+.|..+++........
T Consensus        81 C~~~~~-~~~l~~~~-~~~I~~i~~~~~~~~~~~~~-----~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~  153 (386)
T 3v65_B           81 CKALGP-EPVLLFAN-RIDIRQVLPHRSEYTLLLNN-----LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEV  153 (386)
T ss_dssp             EEECSS-CCEEEEEC-BSCEEEECTTSCCCEEEECS-----CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEE
T ss_pred             ECCccc-cceeEeec-CccceeeccCCCcEEEEecC-----CCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEE
Confidence            444434 23444343 34677788776543332221     34578899997655444 555678899999876554333


Q ss_pred             EecccccceeEEEEECCCC-CEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCC-CeEEE
Q 040370          103 IVGAHGTAEATSANFTKDQ-RFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPS-NEIVI  180 (228)
Q Consensus       103 ~~~~~~~~~i~~~~~~~~~-~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~i~i  180 (228)
                      +...  ......+++.+.+ .++++-...+.|.+.++........+..  .......+++.|.+..++.+.... +.|..
T Consensus       154 ~~~~--~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~--~l~~P~giavdp~~g~ly~td~~~~~~I~r  229 (386)
T 3v65_B          154 VSTG--LESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQ--SLEKPRAIALHPMEGTIYWTDWGNTPRIEA  229 (386)
T ss_dssp             ECSS--CSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECS--SCSCEEEEEEETTTTEEEEEECSSSCEEEE
T ss_pred             EeCC--CCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecC--CCCCCcEEEEEcCCCeEEEeccCCCCEEEE
Confidence            3221  2345678888754 4445555677899988864332222221  223456778888888887777655 78999


Q ss_pred             EEcCCcceeEEeecCCCCCcEEEEeCCCCcEEE-EecCCCCEEEeee
Q 040370          181 WDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFI-TCGTDRSVRFWKE  226 (228)
Q Consensus       181 ~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-s~~~dg~i~vwd~  226 (228)
                      +++...... .+........+.|+++|++..|+ +-+..+.|..+|+
T Consensus       230 ~~~dG~~~~-~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~  275 (386)
T 3v65_B          230 SSMDGSGRR-IIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANL  275 (386)
T ss_dssp             EETTSCSCE-EEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECT
T ss_pred             EeCCCCCcE-EEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeC
Confidence            887644333 33233345678999998655444 4445566776653

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.54  E-value=0.00021  Score=58.38  Aligned_cols=200  Identities=9%  Similarity=0.002  Sum_probs=117.8

Q ss_pred             ecCcceEEEEEeCCCCEE-EEecCCCeEEEEEcccce----EEeeeccceeeeccceeeEEeCCCCC-eEEEEecCCeEE
Q 040370           17 QDTHNVRSVSFHPSGDFL-LAGTDHPIAHLYDVNTFQ----CYLSANVPEISVNGAINQVRYSSTGG-MYVTASKDGAIR   90 (228)
Q Consensus        17 ~~~~~v~~~~~~~~~~~l-~~~~~d~~i~vw~~~~~~----~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~v~   90 (228)
                      .....+..++|++....| ++-...+.|+.+++....    ........    ......|++.+.++ ++++-...+.|.
T Consensus       421 ~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~----l~~P~GLAvD~~~~~LY~tD~~~~~I~  496 (791)
T 3m0c_C          421 PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRD----IQAPDGLAVDWIHSNIYWTDSVLGTVS  496 (791)
T ss_dssp             CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSS----CSCCCEEEEETTTTEEEEEETTTTEEE
T ss_pred             cCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecC----CCCcceeeeeecCCcEEEEecCCCeEE
Confidence            345567889998854444 455566788888886531    11111111    34567788887664 555556678999


Q ss_pred             EEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeC--CCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEE
Q 040370           91 LWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGK--DSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFV  168 (228)
Q Consensus        91 iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (228)
                      +.++........+...  ......|+++|.+.+|+.+..  .+.|...++... ....+... .-.....+++.+.+..|
T Consensus       497 v~~ldG~~~~~l~~~~--l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~-~~~~lv~~-~l~~P~GLavD~~~~~L  572 (791)
T 3m0c_C          497 VADTKGVKRKTLFREN--GSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV-DIYSLVTE-NIQWPNGITLDLLSGRL  572 (791)
T ss_dssp             EEETTSSSEEEEEECT--TCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC-CEEEEECS-SCSCEEEEEEETTTTEE
T ss_pred             EEeCCCCeEEEEEeCC--CCCcceEEEecCCCCEEEecCCCCCeEEEEecCCC-ceEEEEeC-CCCCceEEEEecCCCeE
Confidence            9998754433333222  345789999997666655542  267999998643 33333221 23456678888888888


Q ss_pred             EEeeCCCCeEEEEEcCCcceeEEeec-CCCCCcEEEEeCCCCcEEEEecCCCCEEEee
Q 040370          169 LSIDEPSNEIVIWDALTAEKVAKWSS-NHIGAPRWIEHSPAEAAFITCGTDRSVRFWK  225 (228)
Q Consensus       169 ~~~~~~d~~i~i~d~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd  225 (228)
                      +.+....+.|...++........... .......+|++.. +.++++-...+.|...+
T Consensus       573 YwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~-~~lYwtD~~~~~I~~~d  629 (791)
T 3m0c_C          573 YWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFE-DKVFWTDIINEAIFSAN  629 (791)
T ss_dssp             EEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEET-TEEEEEETTTTEEEEEE
T ss_pred             EEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEeC-CEEEEEECCCCEEEEEe
Confidence            88777778999999865443333211 1223445666633 34444444555565544

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.53  E-value=5.8e-05  Score=52.86  Aligned_cols=160  Identities=12%  Similarity=0.124  Sum_probs=102.6

Q ss_pred             ccceeeEEeCCCCCeEE-EEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCee
Q 040370           65 NGAINQVRYSSTGGMYV-TASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRL  143 (228)
Q Consensus        65 ~~~i~~~~~~~~~~~l~-~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~  143 (228)
                      ...+..++|+|+++.|+ +...++.|...|.. ++..+.+.... ....-.+++.+++.++++.-.++.+.++++.....
T Consensus        26 ~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g-~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~  103 (255)
T 3qqz_A           26 TNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDF-VKDLETIEYIGDNQFVISDERDYAIYVISLTPNSE  103 (255)
T ss_dssp             CSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSS-CSSEEEEEECSTTEEEEEETTTTEEEEEEECTTCC
T ss_pred             ccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCC-CCChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCe
Confidence            45699999999766454 57778899999987 88887775432 34677888888888777766778899998865442


Q ss_pred             ---EEEEec----ceeeeeeeEEEECCCCcEEEEeeCCCC-eEEEEEcC-CcceeEEee------cCCCCCcEEEEeCCC
Q 040370          144 ---VKQYLG----ATHTQLRFQAVFNDTEEFVLSIDEPSN-EIVIWDAL-TAEKVAKWS------SNHIGAPRWIEHSPA  208 (228)
Q Consensus       144 ---~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~d~-~i~i~d~~-~~~~~~~~~------~~~~~~v~~~~~~~~  208 (228)
                         +.....    .........++++|.+..++++...+. .|+.|+-. ....+....      ..+...+.+++++|.
T Consensus       104 i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~  183 (255)
T 3qqz_A          104 VKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQ  183 (255)
T ss_dssp             EEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETT
T ss_pred             eeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEEcCC
Confidence               222211    112333468899999877777666544 45555511 111111110      123446789999994


Q ss_pred             -CcEEEEecCCCCEEEeee
Q 040370          209 -EAAFITCGTDRSVRFWKE  226 (228)
Q Consensus       209 -~~~l~s~~~dg~i~vwd~  226 (228)
                       +.+++.+..+..+..+|.
T Consensus       184 tg~lliLS~~s~~L~~~d~  202 (255)
T 3qqz_A          184 KNTLLVLSHESRALQEVTL  202 (255)
T ss_dssp             TTEEEEEETTTTEEEEECT
T ss_pred             CCeEEEEECCCCeEEEEcC
Confidence             556666666666766663

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.51  E-value=0.00012  Score=59.97  Aligned_cols=197  Identities=13%  Similarity=0.087  Sum_probs=120.7

Q ss_pred             cceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCCCce
Q 040370           20 HNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANC   99 (228)
Q Consensus        20 ~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~   99 (228)
                      ..|.++...+++. |..|+.++-|..++..++............ ...|.++...++++ |..|+.++-+..+|.++++.
T Consensus       363 ~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~-~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~  439 (781)
T 3v9f_A          363 KVVSSVCDDGQGK-LWIGTDGGGINVFENGKRVAIYNKENRELL-SNSVLCSLKDSEGN-LWFGTYLGNISYYNTRLKKF  439 (781)
T ss_dssp             SCEEEEEECTTSC-EEEEEBSSCEEEEETTEEEEECC-----CC-CSBEEEEEECTTSC-EEEEETTEEEEEECSSSCEE
T ss_pred             cceEEEEEcCCCC-EEEEeCCCcEEEEECCCCeEEEccCCCCCC-CcceEEEEECCCCC-EEEEeccCCEEEEcCCCCcE
Confidence            5688998887776 445665556888998765433221111111 46789998887776 44566667789999876653


Q ss_pred             eeEEec-ccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecc---eeeeeeeEEEECCCCcEEEEeeCCC
Q 040370          100 VRSIVG-AHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGA---THTQLRFQAVFNDTEEFVLSIDEPS  175 (228)
Q Consensus       100 ~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~d  175 (228)
                      .. +.. ......|.++...+++.. ..|+. +-+..+|..+++........   .....+.++...+++...+.+..  
T Consensus       440 ~~-~~~~~~~~~~v~~i~~d~~g~l-wigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~--  514 (781)
T 3v9f_A          440 QI-IELEKNELLDVRVFYEDKNKKI-WIGTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFG--  514 (781)
T ss_dssp             EE-CCSTTTCCCCEEEEEECTTSEE-EEEET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESS--
T ss_pred             EE-eccCCCCCCeEEEEEECCCCCE-EEEEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcC--
Confidence            32 221 112457888988887764 44555 56899998776543322111   01345677778888887776543  


Q ss_pred             CeEEEEEcCCcceeEEeecC---CCCCcEEEEeCCCCcEEEEecCCCCEEEeee
Q 040370          176 NEIVIWDALTAEKVAKWSSN---HIGAPRWIEHSPAEAAFITCGTDRSVRFWKE  226 (228)
Q Consensus       176 ~~i~i~d~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~  226 (228)
                      +.+..||..+++.. .+...   ....|.++...++|.+.++.. +|.+..||.
T Consensus       515 ~Gl~~~~~~~~~~~-~~~~~~~l~~~~i~~i~~d~~g~lWi~T~-~Glv~~~d~  566 (781)
T 3v9f_A          515 GGVGIYTPDMQLVR-KFNQYEGFCSNTINQIYRSSKGQMWLATG-EGLVCFPSA  566 (781)
T ss_dssp             SCEEEECTTCCEEE-EECTTTTCSCSCEEEEEECTTSCEEEEET-TEEEEESCT
T ss_pred             CCEEEEeCCCCeEE-EccCCCCCCCCeeEEEEECCCCCEEEEEC-CCceEEECC
Confidence            45778887665433 23111   234688999988888666544 665466653

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=98.47  E-value=9.2e-05  Score=53.55  Aligned_cols=158  Identities=12%  Similarity=0.148  Sum_probs=102.5

Q ss_pred             ceeeEEeCCCCCeEEEEe-cCCeEEEEeCCCCceeeE-Eec----ccccceeEEEEE---CCCCCEEEEee---------
Q 040370           67 AINQVRYSSTGGMYVTAS-KDGAIRLWDGVSANCVRS-IVG----AHGTAEATSANF---TKDQRFVLSCG---------  128 (228)
Q Consensus        67 ~i~~~~~~~~~~~l~~~~-~dg~v~iwd~~~~~~~~~-~~~----~~~~~~i~~~~~---~~~~~~l~~~~---------  128 (228)
                      ...+++|++....|..++ ..+.|..||...+..... +..    ......+..+.+   .|+++++++..         
T Consensus        14 yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g   93 (334)
T 2p9w_A           14 TPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFAD   93 (334)
T ss_dssp             CCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTS
T ss_pred             CCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccccc
Confidence            456789988655566555 789999999875543333 211    111224688999   68877777543         


Q ss_pred             ----CCCeEEEEEcc---CCeeEEEEecce-----------eeeeeeEEEECCCCcEEEEeeCCC-CeEEEEEcCCccee
Q 040370          129 ----KDSTVKLWEVS---SGRLVKQYLGAT-----------HTQLRFQAVFNDTEEFVLSIDEPS-NEIVIWDALTAEKV  189 (228)
Q Consensus       129 ----~d~~i~~wd~~---~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~d-~~i~i~d~~~~~~~  189 (228)
                          .+..+..||+.   +++.+.......           .......+...++|+..++.+. . +.|...+.. ++..
T Consensus        94 ~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~-~~~~I~rV~pd-G~~~  171 (334)
T 2p9w_A           94 QSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFAL-GMPAIARVSAD-GKTV  171 (334)
T ss_dssp             CCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEE-SSCEEEEECTT-SCCE
T ss_pred             cccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCC-CCCeEEEEeCC-CCEE
Confidence                26789999999   777766554211           1134678888999887665443 3 666666644 3333


Q ss_pred             EEeec-----CCCCCcEEEEeCCCCcEEEEecCCCCEEEeee
Q 040370          190 AKWSS-----NHIGAPRWIEHSPAEAAFITCGTDRSVRFWKE  226 (228)
Q Consensus       190 ~~~~~-----~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~  226 (228)
                      ..+..     ......+.|+++|+++.|+.....|.+.-+|+
T Consensus       172 ~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~  213 (334)
T 2p9w_A          172 STFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDV  213 (334)
T ss_dssp             EEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEEC
T ss_pred             eeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcC
Confidence            32211     11224679999999998888877999988885

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=98.46  E-value=3.3e-06  Score=68.01  Aligned_cols=197  Identities=9%  Similarity=-0.005  Sum_probs=115.2

Q ss_pred             cceEEEEEeCCCCEEEEe-cCCCeEEEEEccc----ceEEeeeccceeeeccceeeEEeCCC-CCeEEEEecCCeEEEEe
Q 040370           20 HNVRSVSFHPSGDFLLAG-TDHPIAHLYDVNT----FQCYLSANVPEISVNGAINQVRYSST-GGMYVTASKDGAIRLWD   93 (228)
Q Consensus        20 ~~v~~~~~~~~~~~l~~~-~~d~~i~vw~~~~----~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~v~iwd   93 (228)
                      ..+..++|++.+..|+.+ ...+.|+.+++..    .........   . ......+++.+. ++++++-...+.|.+.+
T Consensus       406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~---~-~~~P~glavD~~~g~LY~tD~~~~~I~v~d  481 (699)
T 1n7d_A          406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISR---D-IQAPDGLAVDWIHSNIYWTDSVLGTVSVAD  481 (699)
T ss_dssp             TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCS---C-C--CCCEECCCSSSBCEECCTTTSCEEEEB
T ss_pred             cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeC---C-CCCcceEEEEeeCCcEEEEeccCCeEEEEe
Confidence            456788999866666554 4567888888875    111111110   0 123567888864 44555555678899999


Q ss_pred             CCCCceeeEEecccccceeEEEEECCCCCEEEEeeC-C-CeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEe
Q 040370           94 GVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGK-D-STVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSI  171 (228)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d-~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (228)
                      +........+...  ......++++|.+.+|+.+.. . +.|..+++.. .....+... .......++++|++..|+.+
T Consensus       482 ~dg~~~~~l~~~~--~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG-~~~~~l~~~-~l~~PnGlavd~~~~~LY~a  557 (699)
T 1n7d_A          482 TKGVKRKTLFREQ--GSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG-VDIYSLVTE-NIQWPNGITLDLLSGRLYWV  557 (699)
T ss_dssp             SSSCCEEEECCCS--SCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSS-CCCCEESCS-SCSSCCCEEECTTTCCEEEE
T ss_pred             cCCCceEEEEeCC--CCCcceEEEccCCCcEEEcccCCCCeEEEEeCCC-CCeeEEEeC-CCCCccEEEEeccCCEEEEE
Confidence            8754433322221  234577889996655554442 2 6788888753 222222111 22345678899988888877


Q ss_pred             eCCCCeEEEEEcCCcceeEEeec--CCCCCcEEEEeCCCCcEEEEecCCCCEEEeee
Q 040370          172 DEPSNEIVIWDALTAEKVAKWSS--NHIGAPRWIEHSPAEAAFITCGTDRSVRFWKE  226 (228)
Q Consensus       172 ~~~d~~i~i~d~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~  226 (228)
                      ....+.|..+++..... ..+..  ........|++..+ .++++....+.|..++.
T Consensus       558 D~~~~~I~~~d~dG~~~-~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~  612 (699)
T 1n7d_A          558 DSKLHSISSIDVNGGNR-KTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANR  612 (699)
T ss_dssp             ETTTTEEEEECSSSSCC-EEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEET
T ss_pred             ecCCCeEEEEccCCCce-EEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEc
Confidence            77778999999864332 22212  12233445666543 55566666778887764

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.46  E-value=8.8e-05  Score=53.96  Aligned_cols=180  Identities=10%  Similarity=-0.003  Sum_probs=106.3

Q ss_pred             CCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCC-eEEEEecCCeEEEEeCCCCceeeEEecccccceeEEEEEC
Q 040370           40 HPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGG-MYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFT  118 (228)
Q Consensus        40 d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~  118 (228)
                      ...|+..+++...........  . ......++|.+.++ ++.+-...+.|..+++..+.....+.... -.....+++.
T Consensus        12 ~~~I~~i~l~~~~~~~~~~~~--~-~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~-l~~p~glavd   87 (318)
T 3sov_A           12 RRDLRLVDATNGKENATIVVG--G-LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSG-LLSPDGLACD   87 (318)
T ss_dssp             EEEEEEEETTCTTSCCEEEEE--E-EEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEEC-CSCCCEEEEE
T ss_pred             cCeEEEEECCCCceEEEEEec--C-CCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCC-CCCccEEEEE
Confidence            457888888765311111111  1 23467899998544 44555567889999987664222221111 2345678888


Q ss_pred             C-CCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeC-CCCeEEEEEcCCcceeEEeecCC
Q 040370          119 K-DQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDE-PSNEIVIWDALTAEKVAKWSSNH  196 (228)
Q Consensus       119 ~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~i~i~d~~~~~~~~~~~~~~  196 (228)
                      + .++.+++-...+.|.++++... ....+... .......+++.|.+..++.+.. ..+.|...++... ....+....
T Consensus        88 ~~~g~ly~~d~~~~~I~~~~~dG~-~~~~l~~~-~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~-~~~~~~~~~  164 (318)
T 3sov_A           88 WLGEKLYWTDSETNRIEVSNLDGS-LRKVLFWQ-ELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGS-SRFIIINSE  164 (318)
T ss_dssp             TTTTEEEEEETTTTEEEEEETTSC-SCEEEECS-SCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSC-SCEEEECSS
T ss_pred             cCCCeEEEEECCCCEEEEEECCCC-cEEEEEeC-CCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCC-CeEEEEECC
Confidence            7 4455555556788999998643 32333211 2234467788887777777663 3578888887543 333332333


Q ss_pred             CCCcEEEEeCCCCcEEEE-ecCCCCEEEeee
Q 040370          197 IGAPRWIEHSPAEAAFIT-CGTDRSVRFWKE  226 (228)
Q Consensus       197 ~~~v~~~~~~~~~~~l~s-~~~dg~i~vwd~  226 (228)
                      ....+.++++|++..|+. =+..+.|..+|+
T Consensus       165 l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~  195 (318)
T 3sov_A          165 IYWPNGLTLDYEEQKLYWADAKLNFIHKSNL  195 (318)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             CCCccEEEEeccCCEEEEEECCCCEEEEEcC
Confidence            456789999986555544 445667777664

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.46  E-value=0.00019  Score=53.93  Aligned_cols=184  Identities=7%  Similarity=-0.051  Sum_probs=110.8

Q ss_pred             EEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEE-EEecCCeEEEEeCCCCc---eeeEEecccc
Q 040370           33 FLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYV-TASKDGAIRLWDGVSAN---CVRSIVGAHG  108 (228)
Q Consensus        33 ~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~dg~v~iwd~~~~~---~~~~~~~~~~  108 (228)
                      +|+.+. ...|+..++...........     ...+..++|++.++.|+ +-...+.|+.+++....   ....+... .
T Consensus        85 ~ll~~~-~~~I~~i~l~~~~~~~~~~~-----~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~-~  157 (400)
T 3p5b_L           85 YLFFTN-RHEVRKMTLDRSEYTSLIPN-----LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISR-D  157 (400)
T ss_dssp             EEEEEE-TTEEEEECTTSCSCEEEECS-----CSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECS-S
T ss_pred             eeEEec-cceeEEEccCCcceeEeccc-----cCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeC-C
Confidence            444443 36788888876543332221     45678999998655555 44467889999886522   12222221 1


Q ss_pred             cceeEEEEECC-CCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCC-CCeEEEEEcCCc
Q 040370          109 TAEATSANFTK-DQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEP-SNEIVIWDALTA  186 (228)
Q Consensus       109 ~~~i~~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-d~~i~i~d~~~~  186 (228)
                      ......+++.+ .++++++-...+.|.+.++........+..  .......+++.|.+.+++.+... .+.|...++...
T Consensus       158 ~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~--~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~  235 (400)
T 3p5b_L          158 IQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRE--NGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV  235 (400)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEEC--SSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSC
T ss_pred             CCCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeC--CCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCC
Confidence            34567888987 455555656678899999875443333321  22335678888877777776642 378888887644


Q ss_pred             ceeEEeecCCCCCcEEEEeCCCCcEEEEe-cCCCCEEEeee
Q 040370          187 EKVAKWSSNHIGAPRWIEHSPAEAAFITC-GTDRSVRFWKE  226 (228)
Q Consensus       187 ~~~~~~~~~~~~~v~~~~~~~~~~~l~s~-~~dg~i~vwd~  226 (228)
                      ... .+........+.|+++|++..|+.+ ...+.|...|+
T Consensus       236 ~~~-~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~  275 (400)
T 3p5b_L          236 DIY-SLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDV  275 (400)
T ss_dssp             SCE-EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             ccE-EEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeC
Confidence            333 3323344578899999876666554 34566766653

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.43  E-value=5.3e-05  Score=59.88  Aligned_cols=193  Identities=9%  Similarity=0.010  Sum_probs=118.9

Q ss_pred             CCEEEEecC-CCeEEEEEc-ccceEEeeeccceeeecc-------ceeeEEeCCCCCe----EEEEecCCeEEEEeCCCC
Q 040370           31 GDFLLAGTD-HPIAHLYDV-NTFQCYLSANVPEISVNG-------AINQVRYSSTGGM----YVTASKDGAIRLWDGVSA   97 (228)
Q Consensus        31 ~~~l~~~~~-d~~i~vw~~-~~~~~~~~~~~~~~~~~~-------~i~~~~~~~~~~~----l~~~~~dg~v~iwd~~~~   97 (228)
                      +..+++++. ++.|.-+|. .+|+.+............       ....+++.|.+..    ++.++.|+.|.-+|.++|
T Consensus        62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG  141 (599)
T 1w6s_A           62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG  141 (599)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred             CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCC
Confidence            456667776 889999999 899988776543211000       0123455444444    888889999999999999


Q ss_pred             ceeeEEeccccc--ceeEE-EEECCCCCEEEEee------CCCeEEEEEccCCeeEEEEecceeee--------------
Q 040370           98 NCVRSIVGAHGT--AEATS-ANFTKDQRFVLSCG------KDSTVKLWEVSSGRLVKQYLGATHTQ--------------  154 (228)
Q Consensus        98 ~~~~~~~~~~~~--~~i~~-~~~~~~~~~l~~~~------~d~~i~~wd~~~~~~~~~~~~~~~~~--------------  154 (228)
                      +.+-........  ..+.+ .... ++ .++.++      .++.|+-+|.++++.+-++.......              
T Consensus       142 ~~~W~~~~~~~~~~~~~~ssP~v~-~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~  219 (599)
T 1w6s_A          142 ETVWKVENSDIKVGSTLTIAPYVV-KD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPH  219 (599)
T ss_dssp             CEEEEEECCCGGGTCBCCSCCEEE-TT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGG
T ss_pred             CEEEeecCCCCCccceeecCCEEE-CC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCcccccccccccccccc
Confidence            988776543210  01111 1111 34 455554      37999999999999887765422110              


Q ss_pred             ----------------------eeeEEEECCCCcEEEEeeCC---------------CCeEEEEEcCCcceeEEeecCCC
Q 040370          155 ----------------------LRFQAVFNDTEEFVLSIDEP---------------SNEIVIWDALTAEKVAKWSSNHI  197 (228)
Q Consensus       155 ----------------------~~~~~~~~~~~~~~~~~~~~---------------d~~i~i~d~~~~~~~~~~~~~~~  197 (228)
                                            .-....+.+....++...++               .+.|..+|.++|+..-.+...+.
T Consensus       220 ~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~  299 (599)
T 1w6s_A          220 YGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPH  299 (599)
T ss_dssp             GCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTT
T ss_pred             ccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCC
Confidence                                  00123445566666665442               14899999999999877754332


Q ss_pred             ---------CCcEEEEeC-CCC---cEEEEecCCCCEEEeee
Q 040370          198 ---------GAPRWIEHS-PAE---AAFITCGTDRSVRFWKE  226 (228)
Q Consensus       198 ---------~~v~~~~~~-~~~---~~l~s~~~dg~i~vwd~  226 (228)
                               .++. +... .+|   ..++.++.+|.+.+.|.
T Consensus       300 d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~  340 (599)
T 1w6s_A          300 DEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDR  340 (599)
T ss_dssp             CSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEET
T ss_pred             ccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEEC
Confidence                     1121 2222 456   56777888998888875

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=98.37  E-value=0.00018  Score=55.34  Aligned_cols=156  Identities=8%  Similarity=-0.015  Sum_probs=97.2

Q ss_pred             eeeEEeCCC-CCeEEEEe-cCCeEEEEeCCCCceeeEEeccc-ccceeEEEEE-------CCCCCEEEEeeCCC------
Q 040370           68 INQVRYSST-GGMYVTAS-KDGAIRLWDGVSANCVRSIVGAH-GTAEATSANF-------TKDQRFVLSCGKDS------  131 (228)
Q Consensus        68 i~~~~~~~~-~~~l~~~~-~dg~v~iwd~~~~~~~~~~~~~~-~~~~i~~~~~-------~~~~~~l~~~~~d~------  131 (228)
                      ...|+|.|. ...|+.+. ..+.|++.|+.++.......... .......++|       ++++++|+.+...+      
T Consensus       141 p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~  220 (496)
T 3kya_A          141 NGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDES  220 (496)
T ss_dssp             EEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGE
T ss_pred             CCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccC
Confidence            457899983 44454444 44678899988776655443321 1235789999       99998666665543      


Q ss_pred             -eEEEEEccC-CeeE-----EEEecceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcC-------Ccce---------
Q 040370          132 -TVKLWEVSS-GRLV-----KQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDAL-------TAEK---------  188 (228)
Q Consensus       132 -~i~~wd~~~-~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~-------~~~~---------  188 (228)
                       .|.+++... +...     ..+.   .......++.+|++..++++...++.|..+|+.       ++..         
T Consensus       221 ~~V~~i~r~~~G~~~~~~~~~~v~---~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~  297 (496)
T 3kya_A          221 PSVYIIKRNADGTFDDRSDIQLIA---AYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNP  297 (496)
T ss_dssp             EEEEEEECCTTSCCSTTSCEEEEE---EESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCT
T ss_pred             ceEEEEecCCCCceeecccceeec---cCCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccc
Confidence             266666333 2221     1221   122345677889777778777778999999987       4443         


Q ss_pred             --eEE-eecCCCCCcEEEEeCCCCcEE-EEecCCCCEEEeee
Q 040370          189 --VAK-WSSNHIGAPRWIEHSPAEAAF-ITCGTDRSVRFWKE  226 (228)
Q Consensus       189 --~~~-~~~~~~~~v~~~~~~~~~~~l-~s~~~dg~i~vwd~  226 (228)
                        ... +..+.......++|+|++++| ++=....+|+.++.
T Consensus       298 g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~  339 (496)
T 3kya_A          298 NTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDY  339 (496)
T ss_dssp             TTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred             cccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEec
Confidence              112 212334456899999999954 44455667777553

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.36  E-value=0.00043  Score=56.70  Aligned_cols=200  Identities=7%  Similarity=-0.007  Sum_probs=120.2

Q ss_pred             CcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeecc-----ceeeeccceeeEEeCCCCCeEEEEecCCeEEEEe
Q 040370           19 THNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANV-----PEISVNGAINQVRYSSTGGMYVTASKDGAIRLWD   93 (228)
Q Consensus        19 ~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~-----~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd   93 (228)
                      ...|.++...++|. |-.|+.++-|..++............     ...-....|.++...++++ |..|+.++-|..+|
T Consensus       312 ~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~  389 (781)
T 3v9f_A          312 NASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGK-LWIGTDGGGINVFE  389 (781)
T ss_dssp             SSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSC-EEEEEBSSCEEEEE
T ss_pred             CCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCC-EEEEeCCCcEEEEE
Confidence            35688998888775 55566666688888775543221110     0010145689999888776 55666666788899


Q ss_pred             CCCCceeeEEe-cccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEee
Q 040370           94 GVSANCVRSIV-GAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSID  172 (228)
Q Consensus        94 ~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (228)
                      ..++....... .......|.++...+++. |..|+.++-+..+|.++++.............+.++...+++...+.+ 
T Consensus       390 ~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwigt-  467 (781)
T 3v9f_A          390 NGKRVAIYNKENRELLSNSVLCSLKDSEGN-LWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIWIGT-  467 (781)
T ss_dssp             TTEEEEECC-----CCCSBEEEEEECTTSC-EEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEEEEE-
T ss_pred             CCCCeEEEccCCCCCCCcceEEEEECCCCC-EEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEEEEE-
Confidence            76543221110 011145788888887776 445666677999998776543221111123456777777777766554 


Q ss_pred             CCCCeEEEEEcCCcceeEEeecC----CCCCcEEEEeCCCCcEEEEecCCCCEEEee
Q 040370          173 EPSNEIVIWDALTAEKVAKWSSN----HIGAPRWIEHSPAEAAFITCGTDRSVRFWK  225 (228)
Q Consensus       173 ~~d~~i~i~d~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd  225 (228)
                      .  +.+..||..+++........    ....|.++...++|.+.+....+| +..||
T Consensus       468 ~--~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~G-l~~~~  521 (781)
T 3v9f_A          468 H--AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGG-VGIYT  521 (781)
T ss_dssp             T--TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSC-EEEEC
T ss_pred             C--CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCCC-EEEEe
Confidence            2  56889998776543332111    135788999998888666543344 55555

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=98.35  E-value=0.00049  Score=54.75  Aligned_cols=199  Identities=9%  Similarity=-0.024  Sum_probs=115.2

Q ss_pred             cCcceEEEEEeCCCCEEEEe-cCCCeEEEEEcccceE-EeeeccceeeeccceeeEEeCCCCC-eEEEEecCCeEEEEeC
Q 040370           18 DTHNVRSVSFHPSGDFLLAG-TDHPIAHLYDVNTFQC-YLSANVPEISVNGAINQVRYSSTGG-MYVTASKDGAIRLWDG   94 (228)
Q Consensus        18 ~~~~v~~~~~~~~~~~l~~~-~~d~~i~vw~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~v~iwd~   94 (228)
                      .-.....++|++.+..|+.+ ...+.|..++++.... .......    ......+++.+.++ ++++-...+.|.+.++
T Consensus        38 ~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~----~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~  113 (619)
T 3s94_A           38 GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSG----LLSPDGLACDWLGEKLYWTDSETNRIEVSNL  113 (619)
T ss_dssp             CCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSS----CSCEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             CCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCC----CCCcCeEEEEecCCEEEEEeCCCCEEEEEEC
Confidence            34567899999866666544 4567888888875421 1111111    24578899988555 5555566789999998


Q ss_pred             CCCceeeEEecccccceeEEEEECCCCCEEEEeeC--CCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEee
Q 040370           95 VSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGK--DSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSID  172 (228)
Q Consensus        95 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (228)
                      .... ...+.... -.....+++.|.+.+|+.+..  .+.|...++.. .....+... .......+++++++..++.+.
T Consensus       114 dG~~-~~~l~~~~-l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG-~~~~~l~~~-~~~~P~Glald~~~~~LY~aD  189 (619)
T 3s94_A          114 DGSL-RKVLFWQE-LDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDG-SSRFIIINS-EIYWPNGLTLDYEEQKLYWAD  189 (619)
T ss_dssp             TSCS-CEEEECSS-CSCCCCEEEETTTTEEEEEECSSSCEEEEEETTS-CSCEEEECS-SCSSEEEEEEETTTTEEEEEE
T ss_pred             CCCC-EEEEEeCC-CCCCceEEEecCCCeEEEeccCCCCEEEEEECCC-CceEEEEeC-CCCCCcEEEEEccCCEEEEEe
Confidence            6543 33333211 345678999997665555543  46777777753 333333211 233456788888888888877


Q ss_pred             CCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeee
Q 040370          173 EPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKE  226 (228)
Q Consensus       173 ~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~  226 (228)
                      ...+.|..+|+..... ..+..+......++++..+ ..+++-...+.|...|.
T Consensus       190 ~~~~~I~~~~~dG~~~-~~~~~~~~~~P~gi~~~~~-~ly~td~~~~~V~~~d~  241 (619)
T 3s94_A          190 AKLNFIHKSNLDGTNR-QAVVKGSLPHPFALTLFED-ILYWTDWSTHSILACNK  241 (619)
T ss_dssp             TTTCCEEEESSSCCEE-C---------CCCEEESSS-EEEEECTTTCSEEEEES
T ss_pred             CCCCeEEEecCCCCcc-EEEEeCCCCCceEEEEeCC-EEEEecCCCCEEEEEEC
Confidence            7778999999864333 2222222233456777655 44555445666766653

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=98.29  E-value=0.00044  Score=50.49  Aligned_cols=193  Identities=9%  Similarity=0.064  Sum_probs=107.7

Q ss_pred             cceEEEEEeCCCCEEEEecCCCeEEEEEc-ccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCCCc
Q 040370           20 HNVRSVSFHPSGDFLLAGTDHPIAHLYDV-NTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSAN   98 (228)
Q Consensus        20 ~~v~~~~~~~~~~~l~~~~~d~~i~vw~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~   98 (228)
                      ..+..+.+.+++..++++. ++.|  |.. +.++........  . ...+..+.+.|++.+++.+...+..+-.|- .++
T Consensus       122 ~~~~~i~~~~~~~~~~~~~-~g~v--~~S~DgG~tW~~~~~~--~-~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~-gG~  194 (327)
T 2xbg_A          122 GSPRLIKALGNGSAEMITN-VGAI--YRTKDSGKNWQALVQE--A-IGVMRNLNRSPSGEYVAVSSRGSFYSTWEP-GQT  194 (327)
T ss_dssp             SCEEEEEEEETTEEEEEET-TCCE--EEESSTTSSEEEEECS--C-CCCEEEEEECTTSCEEEEETTSSEEEEECT-TCS
T ss_pred             CCeEEEEEECCCCEEEEeC-CccE--EEEcCCCCCCEEeecC--C-CcceEEEEEcCCCcEEEEECCCcEEEEeCC-CCC
Confidence            4567787777776666554 5543  332 334333222221  1 456888999998887776655444444442 133


Q ss_pred             eeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecc--eeeeeeeEEEECCCCcEEEEeeCCCC
Q 040370           99 CVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGA--THTQLRFQAVFNDTEEFVLSIDEPSN  176 (228)
Q Consensus        99 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~d~  176 (228)
                      ....+.... ...+..+.+.+++..+ .++.+|.+++.+...++.-..+...  .....+..+.+.+++..+++ +. ++
T Consensus       195 tW~~~~~~~-~~~~~~~~~~~~g~~~-~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~-g~-~g  270 (327)
T 2xbg_A          195 AWEPHNRTT-SRRLHNMGFTPDGRLW-MIVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLA-GG-AG  270 (327)
T ss_dssp             SCEEEECCS-SSCEEEEEECTTSCEE-EEETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEE-ES-TT
T ss_pred             ceeECCCCC-CCccceeEECCCCCEE-EEeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEE-eC-CC
Confidence            333332222 4577888899888755 4556788877643324332222211  11223567778877666555 44 47


Q ss_pred             eEEEEEcCCcceeEEeec--CCCCCcEEEEeCCCCcEEEEecCCCCEEEee
Q 040370          177 EIVIWDALTAEKVAKWSS--NHIGAPRWIEHSPAEAAFITCGTDRSVRFWK  225 (228)
Q Consensus       177 ~i~i~d~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd  225 (228)
                      .+ .+....++.-.....  .....+.++.|.+++. ++.++.+|.|.-++
T Consensus       271 ~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~-~~~~G~~G~i~~~~  319 (327)
T 2xbg_A          271 AL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQ-GFILGQKGILLRYV  319 (327)
T ss_dssp             CE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETTE-EEEECSTTEEEEEC
T ss_pred             eE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCCc-eEEEcCCceEEEEc
Confidence            66 344444554443321  2345678888875554 66677888776554

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.28  E-value=0.00071  Score=55.30  Aligned_cols=176  Identities=9%  Similarity=-0.054  Sum_probs=104.7

Q ss_pred             CeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCC-eEEEEecCCeEEEEeCCCC----ceeeEEecccccceeEEE
Q 040370           41 PIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGG-MYVTASKDGAIRLWDGVSA----NCVRSIVGAHGTAEATSA  115 (228)
Q Consensus        41 ~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~v~iwd~~~~----~~~~~~~~~~~~~~i~~~  115 (228)
                      ..|+..++...........     ...+..++|.+.+. ++++-...+.|+.+++...    .....+...  ......|
T Consensus       404 ~~Ir~i~l~~~~~~~l~~~-----~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~--l~~P~GL  476 (791)
T 3m0c_C          404 HEVRKMTLDRSEYTSLIPN-----LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRD--IQAPDGL  476 (791)
T ss_dssp             SSEEEECTTSCCCEEEECS-----CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSS--CSCCCEE
T ss_pred             cceeEeeccCCcceeeecC-----CCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecC--CCCccee
Confidence            4577777765543222221     34567899988544 4455556688998888653    222222211  3455678


Q ss_pred             EECCCCC-EEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCC-CeEEEEEcCCcceeEEee
Q 040370          116 NFTKDQR-FVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPS-NEIVIWDALTAEKVAKWS  193 (228)
Q Consensus       116 ~~~~~~~-~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~i~i~d~~~~~~~~~~~  193 (228)
                      ++.+.++ ++++-...+.|.+.++.... ...+... .......+++.|...+|+.+.... +.|...++.... ...+.
T Consensus       477 AvD~~~~~LY~tD~~~~~I~v~~ldG~~-~~~l~~~-~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~-~~~lv  553 (791)
T 3m0c_C          477 AVDWIHSNIYWTDSVLGTVSVADTKGVK-RKTLFRE-NGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-IYSLV  553 (791)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEETTSSS-EEEEEEC-TTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC-EEEEE
T ss_pred             eeeecCCcEEEEecCCCeEEEEeCCCCe-EEEEEeC-CCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCc-eEEEE
Confidence            8887664 45555567899999987543 3333211 223456788888877777766433 789998886443 33333


Q ss_pred             cCCCCCcEEEEeCCCCcEEEEe-cCCCCEEEeee
Q 040370          194 SNHIGAPRWIEHSPAEAAFITC-GTDRSVRFWKE  226 (228)
Q Consensus       194 ~~~~~~v~~~~~~~~~~~l~s~-~~dg~i~vwd~  226 (228)
                      .........|++++.+..|+.+ ...+.|...++
T Consensus       554 ~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~  587 (791)
T 3m0c_C          554 TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDV  587 (791)
T ss_dssp             CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             eCCCCCceEEEEecCCCeEEEEeCCCCcEEEEec
Confidence            4444678899999766555544 34455666553

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=98.25  E-value=0.001  Score=53.03  Aligned_cols=194  Identities=8%  Similarity=0.006  Sum_probs=121.4

Q ss_pred             cceEEEEEeCCCCEEE-EecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCC-eEEEEecCCeEEEEeCCCC
Q 040370           20 HNVRSVSFHPSGDFLL-AGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGG-MYVTASKDGAIRLWDGVSA   97 (228)
Q Consensus        20 ~~v~~~~~~~~~~~l~-~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~v~iwd~~~~   97 (228)
                      ..+..++|++.+..|+ +-..++.|..++++...........    ......+++.+.+. +.++-...+.|.+.++...
T Consensus        37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g----~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~  112 (628)
T 4a0p_A           37 KEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFG----LDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQ  112 (628)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSS----CSCCCEEEEETTTTEEEEEETTTTEEEEEETTST
T ss_pred             CceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCC----CCCcceEEEEeCCCEEEEEECCCCEEEEEecCCC
Confidence            4678999998655555 5556788888888754322222211    23467788876544 4455556788999998654


Q ss_pred             ceeeEEecccccceeEEEEECCCCCEEEEee--CCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCC
Q 040370           98 NCVRSIVGAHGTAEATSANFTKDQRFVLSCG--KDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPS  175 (228)
Q Consensus        98 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  175 (228)
                      . ...+.... -.....++++|....|+...  ..+.|...++.... ...+..  .......+++++++..++.+....
T Consensus       113 ~-~~~l~~~~-l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~-~~~l~~--~~~~P~GlalD~~~~~LY~aD~~~  187 (628)
T 4a0p_A          113 H-RQVLVWKD-LDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSE-RTTLVP--NVGRANGLTIDYAKRRLYWTDLDT  187 (628)
T ss_dssp             T-CEEEECSS-CCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS-CEEEEC--SCSSEEEEEEETTTTEEEEEETTT
T ss_pred             c-EEEEEeCC-CCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCc-eEEEEC--CCCCcceEEEccccCEEEEEECCC
Confidence            3 33332211 34568999999655555554  25678888876433 333322  234556788899888888888878


Q ss_pred             CeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEee
Q 040370          176 NEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWK  225 (228)
Q Consensus       176 ~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd  225 (228)
                      +.|..+|+..... ..+ .........+++.. +.++++-...+.|...|
T Consensus       188 ~~I~~~d~dG~~~-~v~-~~~l~~P~glav~~-~~ly~tD~~~~~I~~~d  234 (628)
T 4a0p_A          188 NLIESSNMLGLNR-EVI-ADDLPHPFGLTQYQ-DYIYWTDWSRRSIERAN  234 (628)
T ss_dssp             TEEEEEETTSCSC-EEE-EECCSCEEEEEEET-TEEEEEETTTTEEEEEE
T ss_pred             CEEEEEcCCCCce-EEe-eccCCCceEEEEEC-CEEEEecCCCCEEEEEE
Confidence            9999999865444 223 22334456777764 45555555566676665

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=98.17  E-value=0.00087  Score=49.36  Aligned_cols=190  Identities=8%  Similarity=0.050  Sum_probs=111.7

Q ss_pred             cceEEEEEeCCCCEEEEe------------cCCCeEEEEEcccc--eEEeeeccce---eeeccceeeEEeCC--CCC-e
Q 040370           20 HNVRSVSFHPSGDFLLAG------------TDHPIAHLYDVNTF--QCYLSANVPE---ISVNGAINQVRYSS--TGG-M   79 (228)
Q Consensus        20 ~~v~~~~~~~~~~~l~~~------------~~d~~i~vw~~~~~--~~~~~~~~~~---~~~~~~i~~~~~~~--~~~-~   79 (228)
                      ...-.+...|+|..++++            ..+|.|.++|.++.  +. ..+....   ....-....+.+.+  ++. +
T Consensus        50 ~G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~-~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~  128 (355)
T 3sre_A           50 NGSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAV-SELEIIGNTLDISSFNPHGISTFIDDDNTVY  128 (355)
T ss_dssp             SCCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCE-EECEEECSSCCGGGCCEEEEEEEECTTCCEE
T ss_pred             CCcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCce-EEEEccCCCCCcCceeeeeeEEEECCCCcEE
Confidence            345677788887655554            26899999998742  22 1221110   00023556677655  343 4


Q ss_pred             EEEEe-c--CCeEEEEeCCCCce----eeEEecccccceeEEEEECCCCCEEEEee-----------------CCCeEEE
Q 040370           80 YVTAS-K--DGAIRLWDGVSANC----VRSIVGAHGTAEATSANFTKDQRFVLSCG-----------------KDSTVKL  135 (228)
Q Consensus        80 l~~~~-~--dg~v~iwd~~~~~~----~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-----------------~d~~i~~  135 (228)
                      |+.+. .  +..+.+|++.....    +..+... .-...+.+.+.++|...++..                 ..|.|..
T Consensus       129 L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~-~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr  207 (355)
T 3sre_A          129 LLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHK-LLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTY  207 (355)
T ss_dssp             EEEEECSTTCCEEEEEEEETTTTEEEEEEEECCT-TCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEE
T ss_pred             EEEEECCCCCCeEEEEEEECCCCEEEEEeccccC-CCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEE
Confidence            44442 2  46788887665321    2223222 234578899999998777654                 1245555


Q ss_pred             EEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCC-ccee--EEeecCCCCCcEEEEeCC-CCcE
Q 040370          136 WEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALT-AEKV--AKWSSNHIGAPRWIEHSP-AEAA  211 (228)
Q Consensus       136 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~-~~~~--~~~~~~~~~~v~~~~~~~-~~~~  211 (228)
                      +|.  ++ +..+..  .-.....++++|+++.++++.+..+.|..|++.. +...  ..+  ...+....+++.+ +|++
T Consensus       208 ~d~--~~-~~~~~~--~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~--~~~g~PDGi~vD~e~G~l  280 (355)
T 3sre_A          208 YSP--ND-VRVVAE--GFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL--SFDTLVDNISVDPVTGDL  280 (355)
T ss_dssp             ECT--TC-CEEEEE--EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE--ECSSEEEEEEECTTTCCE
T ss_pred             EEC--Ce-EEEeec--CCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE--eCCCCCceEEEeCCCCcE
Confidence            554  32 222211  3345578899999999888887779999999863 3221  122  2346678899998 5888


Q ss_pred             EEEecCC
Q 040370          212 FITCGTD  218 (228)
Q Consensus       212 l~s~~~d  218 (228)
                      .+++..+
T Consensus       281 wva~~~~  287 (355)
T 3sre_A          281 WVGCHPN  287 (355)
T ss_dssp             EEEEESC
T ss_pred             EEEecCC
Confidence            7766533

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=98.15  E-value=0.00085  Score=48.17  Aligned_cols=187  Identities=11%  Similarity=0.014  Sum_probs=93.6

Q ss_pred             CCCEEEEecCC-----CeEEEEEcccce---EEeeeccceeeeccceeeEEeCCCCCeEEEEecC-----CeEEEEeCCC
Q 040370           30 SGDFLLAGTDH-----PIAHLYDVNTFQ---CYLSANVPEISVNGAINQVRYSSTGGMYVTASKD-----GAIRLWDGVS   96 (228)
Q Consensus        30 ~~~~l~~~~~d-----~~i~vw~~~~~~---~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~v~iwd~~~   96 (228)
                      ++..++.|+.+     ..+.+||..+.+   -......+..  ......+..  +++.++.|+.+     ..+.+||+.+
T Consensus        62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~--r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~  137 (301)
T 2vpj_A           62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVR--RGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNI  137 (301)
T ss_dssp             TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSC--CBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTT
T ss_pred             CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCC--ccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCC
Confidence            56667777654     468899988765   3222222211  111222222  56677777644     3688999887


Q ss_pred             CceeeEEecccccceeEEEEECCCCCEEEEeeCC-----CeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEe
Q 040370           97 ANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKD-----STVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSI  171 (228)
Q Consensus        97 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (228)
                      .+-...-........-.++.+  +++.++.|+.+     ..+.+||+.+.+....-... .......+... ++..++.+
T Consensus       138 ~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p-~~r~~~~~~~~-~~~i~v~G  213 (301)
T 2vpj_A          138 DQWSMLGDMQTAREGAGLVVA--SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMA-TKRSGAGVALL-NDHIYVVG  213 (301)
T ss_dssp             TEEEEEEECSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCS-SCCBSCEEEEE-TTEEEEEC
T ss_pred             CeEEECCCCCCCcccceEEEE--CCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCC-cccccceEEEE-CCEEEEEe
Confidence            654433222211111122222  56777777754     45899999877554332111 11111112221 34444444


Q ss_pred             eCC----CCeEEEEEcCCcceeEEeecCC-CCCcEEEEeCCCCcEEEEecCCC-----CEEEeee
Q 040370          172 DEP----SNEIVIWDALTAEKVAKWSSNH-IGAPRWIEHSPAEAAFITCGTDR-----SVRFWKE  226 (228)
Q Consensus       172 ~~~----d~~i~i~d~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~s~~~dg-----~i~vwd~  226 (228)
                      |..    -..+.+||..+.+-...-.... ......+.+  ++++++.||.++     .+.+||+
T Consensus       214 G~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~  276 (301)
T 2vpj_A          214 GFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATVL--RGRLYAIAGYDGNSLLSSIECYDP  276 (301)
T ss_dssp             CBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBEEEEEEEET
T ss_pred             CCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEEEE--CCEEEEEcCcCCCcccccEEEEcC
Confidence            432    2468999988765332211111 111122222  677788887653     4566664

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=98.12  E-value=0.0011  Score=48.43  Aligned_cols=191  Identities=14%  Similarity=0.109  Sum_probs=100.7

Q ss_pred             CcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCCCc
Q 040370           19 THNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSAN   98 (228)
Q Consensus        19 ~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~   98 (228)
                      ...+.++.|.+ +..++ ++..+.|.. ..+.++.-......... ...+..+.+.+++..++.+ .+|.|.. ....++
T Consensus        79 ~~~~~~i~~~~-~~~~~-~g~~g~i~~-S~DgG~tW~~~~~~~~~-~~~~~~i~~~~~~~~~~~~-~~g~v~~-S~DgG~  152 (327)
T 2xbg_A           79 DYRFNSVSFQG-NEGWI-VGEPPIMLH-TTDGGQSWSQIPLDPKL-PGSPRLIKALGNGSAEMIT-NVGAIYR-TKDSGK  152 (327)
T ss_dssp             CCEEEEEEEET-TEEEE-EEETTEEEE-ESSTTSSCEECCCCTTC-SSCEEEEEEEETTEEEEEE-TTCCEEE-ESSTTS
T ss_pred             CccEEEEEecC-CeEEE-EECCCeEEE-ECCCCCCceECccccCC-CCCeEEEEEECCCCEEEEe-CCccEEE-EcCCCC
Confidence            34688899986 44444 445564432 33334432222211001 2346677777666655555 4565432 223344


Q ss_pred             eeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCCeE
Q 040370           99 CVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEI  178 (228)
Q Consensus        99 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i  178 (228)
                      .-....... ...+..+.+.+++.+++.+...+..+-.|- .++.-..+.. ........+.+.+++..++++ . +|.+
T Consensus       153 tW~~~~~~~-~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~-gG~tW~~~~~-~~~~~~~~~~~~~~g~~~~~~-~-~G~~  227 (327)
T 2xbg_A          153 NWQALVQEA-IGVMRNLNRSPSGEYVAVSSRGSFYSTWEP-GQTAWEPHNR-TTSRRLHNMGFTPDGRLWMIV-N-GGKI  227 (327)
T ss_dssp             SEEEEECSC-CCCEEEEEECTTSCEEEEETTSSEEEEECT-TCSSCEEEEC-CSSSCEEEEEECTTSCEEEEE-T-TTEE
T ss_pred             CCEEeecCC-CcceEEEEEcCCCcEEEEECCCcEEEEeCC-CCCceeECCC-CCCCccceeEECCCCCEEEEe-C-CceE
Confidence            444443322 446888999998887776654443444442 1222111211 123455667778888766553 3 4877


Q ss_pred             EEEEcCCcceeEEeecC---CCCCcEEEEeCCCCcEEEEecCCCCE
Q 040370          179 VIWDALTAEKVAKWSSN---HIGAPRWIEHSPAEAAFITCGTDRSV  221 (228)
Q Consensus       179 ~i~d~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~s~~~dg~i  221 (228)
                      ++.+...++.-......   +...+.++.+.+++..++.+. +|.+
T Consensus       228 ~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i  272 (327)
T 2xbg_A          228 AFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AGAL  272 (327)
T ss_dssp             EEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEES-TTCE
T ss_pred             EEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeC-CCeE
Confidence            77643334433322112   223588899998877666654 5655

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=98.10  E-value=2.4e-05  Score=63.11  Aligned_cols=177  Identities=7%  Similarity=-0.076  Sum_probs=102.2

Q ss_pred             CCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEe-cCCeEEEEeCCC----CceeeEEecccccceeEE
Q 040370           40 HPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTAS-KDGAIRLWDGVS----ANCVRSIVGAHGTAEATS  114 (228)
Q Consensus        40 d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~v~iwd~~~----~~~~~~~~~~~~~~~i~~  114 (228)
                      .+.|+..++...+.......     ...+..++|++.+..|+.+. ..+.|+.+++..    ......+...  ......
T Consensus       385 ~~~I~~id~~~~~~~~~~~~-----~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~--~~~P~g  457 (699)
T 1n7d_A          385 RHEVRKMTLDRSEYTSLIPN-----LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRD--IQAPDG  457 (699)
T ss_dssp             TTC-CEECTTSCCEECCSCC-----CTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSC--C--CCC
T ss_pred             ccceEEEeCCCCcceeeecc-----CcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCC--CCCcce
Confidence            35677888876554333222     34567899998766665554 567899998875    2222111111  123456


Q ss_pred             EEECCC-CCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCC-CeEEEEEcCCcceeEEe
Q 040370          115 ANFTKD-QRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPS-NEIVIWDALTAEKVAKW  192 (228)
Q Consensus       115 ~~~~~~-~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~i~i~d~~~~~~~~~~  192 (228)
                      +++.+. ++++++-...+.|.++++.... ...+... .......+++.|.+.+++.+.... +.|..+++.... ...+
T Consensus       458 lavD~~~g~LY~tD~~~~~I~v~d~dg~~-~~~l~~~-~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~-~~~l  534 (699)
T 1n7d_A          458 LAVDWIHSNIYWTDSVLGTVSVADTKGVK-RKTLFRE-QGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-IYSL  534 (699)
T ss_dssp             EECCCSSSBCEECCTTTSCEEEEBSSSCC-EEEECCC-SSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCC-CCEE
T ss_pred             EEEEeeCCcEEEEeccCCeEEEEecCCCc-eEEEEeC-CCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCC-eeEE
Confidence            788864 4555555567889999986543 3333211 123345678888777777665433 678887765332 2222


Q ss_pred             ecCCCCCcEEEEeCCCCc-EEEEecCCCCEEEeee
Q 040370          193 SSNHIGAPRWIEHSPAEA-AFITCGTDRSVRFWKE  226 (228)
Q Consensus       193 ~~~~~~~v~~~~~~~~~~-~l~s~~~dg~i~vwd~  226 (228)
                      ........+.|+|+|++. ++++-+..+.|..+++
T Consensus       535 ~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~  569 (699)
T 1n7d_A          535 VTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDV  569 (699)
T ss_dssp             SCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECS
T ss_pred             EeCCCCCccEEEEeccCCEEEEEecCCCeEEEEcc
Confidence            222334577899998654 4455555667777764

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=98.08  E-value=0.0012  Score=47.55  Aligned_cols=187  Identities=7%  Similarity=0.069  Sum_probs=94.3

Q ss_pred             CCCEEEEecCC----CeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecC------CeEEEEeCCCCce
Q 040370           30 SGDFLLAGTDH----PIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKD------GAIRLWDGVSANC   99 (228)
Q Consensus        30 ~~~~l~~~~~d----~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d------g~v~iwd~~~~~~   99 (228)
                      ++..++.|+.+    ..+.+||..+.+-......+..  ......+.+  +++.++.|+.+      ..+.+||+.+.+-
T Consensus        55 ~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~--r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W  130 (306)
T 3ii7_A           55 DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTP--RDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESW  130 (306)
T ss_dssp             TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSC--CBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEE
T ss_pred             CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCcc--ccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCce
Confidence            56677777654    6788999988764433322211  111122222  56677777755      4688999887754


Q ss_pred             eeEEecccccceeEEEEECCCCCEEEEeeC---------CCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEE
Q 040370          100 VRSIVGAHGTAEATSANFTKDQRFVLSCGK---------DSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLS  170 (228)
Q Consensus       100 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---------d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (228)
                      ...-........-..+.+  +++.++.|+.         -..+.+||+.+.+....-... .......+... ++..++.
T Consensus       131 ~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p-~~r~~~~~~~~-~~~i~v~  206 (306)
T 3ii7_A          131 HTKPSMLTQRCSHGMVEA--NGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMI-EARKNHGLVFV-KDKIFAV  206 (306)
T ss_dssp             EEECCCSSCCBSCEEEEE--TTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCS-SCCBSCEEEEE-TTEEEEE
T ss_pred             EeCCCCcCCcceeEEEEE--CCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCcc-chhhcceEEEE-CCEEEEE
Confidence            332221111111122222  5666666653         345889999887543322111 11111122222 4444444


Q ss_pred             eeCCC----CeEEEEEcCCcceeEEee-cCCCCCcEEEEeCCCCcEEEEecCC-----CCEEEeee
Q 040370          171 IDEPS----NEIVIWDALTAEKVAKWS-SNHIGAPRWIEHSPAEAAFITCGTD-----RSVRFWKE  226 (228)
Q Consensus       171 ~~~~d----~~i~i~d~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~s~~~d-----g~i~vwd~  226 (228)
                      +|...    ..+.+||..+.+-...-. .........+.+  ++.+++.||.+     ..+.+||+
T Consensus       207 GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~  270 (306)
T 3ii7_A          207 GGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNT  270 (306)
T ss_dssp             CCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEE--TTEEEEEECBCSSSBCCEEEEEET
T ss_pred             eCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcC
Confidence            44311    468899987764322210 111112223333  67788888854     34666664

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=97.94  E-value=0.0023  Score=45.90  Aligned_cols=187  Identities=13%  Similarity=0.083  Sum_probs=93.2

Q ss_pred             CCCEEEEecCC-----CeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCC-----eEEEEeCCCCce
Q 040370           30 SGDFLLAGTDH-----PIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDG-----AIRLWDGVSANC   99 (228)
Q Consensus        30 ~~~~l~~~~~d-----~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-----~v~iwd~~~~~~   99 (228)
                      ++..++.|+.+     ..+.+||..+.+-......+..  ......+.+  +++.++.|+.++     .+.+||+.+.+-
T Consensus        61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~--r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W  136 (302)
T 2xn4_A           61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDR--RSTLGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSNEW  136 (302)
T ss_dssp             TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSC--CBSCEEEEE--TTEEEEEEEECSSCEEEEEEEEETTTTEE
T ss_pred             CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCcc--ccceEEEEE--CCEEEEEcCCCCCccCceEEEEeCCCCeE
Confidence            56667777644     3588899887764433322211  111222222  567777777553     578889887654


Q ss_pred             eeEEecccccceeEEEEECCCCCEEEEeeCC-------CeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEee
Q 040370          100 VRSIVGAHGTAEATSANFTKDQRFVLSCGKD-------STVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSID  172 (228)
Q Consensus       100 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-------~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (228)
                      ...-...........+.+  +++.++.|+.+       ..+.+||+.+.+....-... .......+... ++..++.+|
T Consensus       137 ~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p-~~r~~~~~~~~-~~~iyv~GG  212 (302)
T 2xn4_A          137 FHVAPMNTRRSSVGVGVV--GGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMS-TRRSGAGVGVL-NNLLYAVGG  212 (302)
T ss_dssp             EEECCCSSCCBSCEEEEE--TTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCS-SCCBSCEEEEE-TTEEEEECC
T ss_pred             eecCCCCCcccCceEEEE--CCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCc-cccccccEEEE-CCEEEEECC
Confidence            332221111111122222  56666666643       35889999876544322111 11111122221 445555544


Q ss_pred             CC----CCeEEEEEcCCcceeEEeecCCC-CCcEEEEeCCCCcEEEEecCCC-----CEEEeee
Q 040370          173 EP----SNEIVIWDALTAEKVAKWSSNHI-GAPRWIEHSPAEAAFITCGTDR-----SVRFWKE  226 (228)
Q Consensus       173 ~~----d~~i~i~d~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~s~~~dg-----~i~vwd~  226 (228)
                      ..    -..+.+||..+.+-...-..... ..-..+.+  ++++++.||.++     .+.+||+
T Consensus       213 ~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~  274 (302)
T 2xn4_A          213 HDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCAV--NGLLYVVGGDDGSCNLASVEYYNP  274 (302)
T ss_dssp             BSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEET
T ss_pred             CCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEEEE--CCEEEEECCcCCCcccccEEEEcC
Confidence            32    14688999877643322111111 11122222  677888887654     3777775

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=97.90  E-value=0.0085  Score=51.25  Aligned_cols=174  Identities=11%  Similarity=0.094  Sum_probs=96.3

Q ss_pred             eEEEEEcccceEEeeeccceeeeccceeeEE---eCCC-CCeEEEEe----------cCCeEEEEeCCCCceeeEEeccc
Q 040370           42 IAHLYDVNTFQCYLSANVPEISVNGAINQVR---YSST-GGMYVTAS----------KDGAIRLWDGVSANCVRSIVGAH  107 (228)
Q Consensus        42 ~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~---~~~~-~~~l~~~~----------~dg~v~iwd~~~~~~~~~~~~~~  107 (228)
                      .|++.|..+.+.+..+....   ...+.+++   |..+ ..+++.|.          ..|.|.++++..++....... .
T Consensus       808 ~i~lidp~t~~~i~~~~l~~---nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~-~  883 (1158)
T 3ei3_A          808 NLLIIDQHTFEVLHAHQFLQ---NEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEK-E  883 (1158)
T ss_dssp             EEEEEETTTCCEEEEEECCT---TEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEE-E
T ss_pred             EEEEEeCCCCeEEEEEeCCC---CcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEE-E
Confidence            35666666665554444332   33344444   4433 46788775          358899999875433222222 2


Q ss_pred             ccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCCeEEEE--EcCC
Q 040370          108 GTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIW--DALT  185 (228)
Q Consensus       108 ~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~--d~~~  185 (228)
                      -++.+++++-- +| +|++| ....+++|++...+.+. .... .-..+........+.+++++... ..+.+.  +...
T Consensus       884 v~g~v~al~~~-~g-~Lla~-ig~~l~vy~l~~~~~L~-~~~~-~~~~i~~~~l~~~~~~I~vgD~~-~Sv~~~~y~~~~  957 (1158)
T 3ei3_A          884 VKGAVYSMVEF-NG-KLLAS-INSTVRLYEWTTEKELR-TECN-HYNNIMALYLKTKGDFILVGDLM-RSVLLLAYKPME  957 (1158)
T ss_dssp             ESSCEEEEEEE-TT-EEEEE-ETTEEEEEEECTTSCEE-EEEE-ECCCSCEEEEEEETTEEEEEESS-BCEEEEEEETTT
T ss_pred             cCCcCEEEeee-CC-EEEEE-cCCEEEEEECCCCceEE-EEee-ccccEEEEEEeccCCEEEEEEhh-heEEEEEEEcCC
Confidence            25678877633 35 44444 35789999998655443 2111 11112222222346778887765 555554  4333


Q ss_pred             cceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeee
Q 040370          186 AEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKE  226 (228)
Q Consensus       186 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~  226 (228)
                      .+....-...+...++++.+-.++ .++.+..+|.+.+.+.
T Consensus       958 ~~L~~~a~D~~~~~vta~~~ld~~-t~l~aD~~gNl~vl~~  997 (1158)
T 3ei3_A          958 GNFEEIARDFNPNWMSAVEILDDD-NFLGAENAFNLFVCQK  997 (1158)
T ss_dssp             TEEEEEEECCSCBCEEEEEEEETT-EEEEEETTSEEEEEEE
T ss_pred             CeEEEEEeecccccEEEEEEEccC-cEEEEcCCCcEEEEec
Confidence            333333223455678888876444 6777888999888754

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=97.78  E-value=0.0034  Score=45.41  Aligned_cols=181  Identities=8%  Similarity=0.012  Sum_probs=87.3

Q ss_pred             eCCCCEEEEecC-----C------CeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecC--------Ce
Q 040370           28 HPSGDFLLAGTD-----H------PIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKD--------GA   88 (228)
Q Consensus        28 ~~~~~~l~~~~~-----d------~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d--------g~   88 (228)
                      ..++..++.|+.     .      ..+.+||..+.+-......+...  .....+.+  +++.++.|+.+        ..
T Consensus        43 ~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r--~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~  118 (315)
T 4asc_A           43 TKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPR--CLFGLGEA--LNSIYVVGGREIKDGERCLDS  118 (315)
T ss_dssp             CTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCE--ESCEEEEE--TTEEEEECCEESSTTCCBCCC
T ss_pred             EECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcch--hceeEEEE--CCEEEEEeCCcCCCCCcccce
Confidence            346777777773     1      12778888877643332222111  11122222  56666666632        45


Q ss_pred             EEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeC-C-----CeEEEEEccCCeeEEEEecceeeeeeeEEEEC
Q 040370           89 IRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGK-D-----STVKLWEVSSGRLVKQYLGATHTQLRFQAVFN  162 (228)
Q Consensus        89 v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d-----~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~  162 (228)
                      +.+||+.+.+-...-........ .+++. .+++.++.|+. +     ..+.+||+.+.+....-... .......+...
T Consensus       119 ~~~~d~~~~~W~~~~~~p~~r~~-~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p-~~r~~~~~~~~  195 (315)
T 4asc_A          119 VMCYDRLSFKWGESDPLPYVVYG-HTVLS-HMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQ-TARSLFGATVH  195 (315)
T ss_dssp             EEEEETTTTEEEECCCCSSCCBS-CEEEE-ETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCS-SCCBSCEEEEE
T ss_pred             EEEECCCCCcEeECCCCCCcccc-eeEEE-ECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCC-CchhceEEEEE
Confidence            88999887653322111111111 12222 35667777775 2     46899999876543322111 11111112222


Q ss_pred             CCCcEEEEeeCCC----CeEEEEEcCCcceeEEeecCCC-CCcEEEEeCCCCcEEEEecCC
Q 040370          163 DTEEFVLSIDEPS----NEIVIWDALTAEKVAKWSSNHI-GAPRWIEHSPAEAAFITCGTD  218 (228)
Q Consensus       163 ~~~~~~~~~~~~d----~~i~i~d~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~s~~~d  218 (228)
                       ++..++.+|..+    ..+.+||..+.+-...-..... .....+.+  ++++++.||.+
T Consensus       196 -~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~  253 (315)
T 4asc_A          196 -DGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSLSLVSL--VGTLYAIGGFA  253 (315)
T ss_dssp             -TTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEEEEEE
T ss_pred             -CCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCcccceeEEEE--CCEEEEECCcc
Confidence             455555555422    2588899877643322111111 11122222  56777777763

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=97.77  E-value=0.0094  Score=47.61  Aligned_cols=200  Identities=8%  Similarity=0.011  Sum_probs=117.3

Q ss_pred             cceEEEEEeCCCCEEEEe-cCCCeEEEEEcccceEEeeeccc-ee-eeccceeeEEeCCCCC-eEEEEecCCeEEEEeCC
Q 040370           20 HNVRSVSFHPSGDFLLAG-TDHPIAHLYDVNTFQCYLSANVP-EI-SVNGAINQVRYSSTGG-MYVTASKDGAIRLWDGV   95 (228)
Q Consensus        20 ~~v~~~~~~~~~~~l~~~-~~d~~i~vw~~~~~~~~~~~~~~-~~-~~~~~i~~~~~~~~~~-~l~~~~~dg~v~iwd~~   95 (228)
                      ..+.+++|.+.+..|+.+ ...+.|+.++++........... .. .....+..+++...++ +.++-+..+.|.+.++.
T Consensus       340 ~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~~~v~~~~~~~~~~~~~p~glAvD~~~~nLY~td~~~~~I~v~~~~  419 (628)
T 4a0p_A          340 RNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLD  419 (628)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--------CCCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             CCceEEEEecCCCeEEEEecCcceEEEEEcCCCCceEEEEcccccccccCCcceEEeeccCCeEEEEcCCCCEEEEEECC
Confidence            457889999866555544 45677888877643321111110 00 0033578899988655 44566677899999985


Q ss_pred             CCceeeEEecccccceeEEEEECC-CCCEEEEeeCCC--eEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEee
Q 040370           96 SANCVRSIVGAHGTAEATSANFTK-DQRFVLSCGKDS--TVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSID  172 (228)
Q Consensus        96 ~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~--~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (228)
                       ++....+.... .....++++.| .+..+.+-....  .|...++. |.....+... .-.....+++.+....++.+.
T Consensus       420 -G~~~~~l~~~~-l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~d-G~~~~~l~~~-~l~~P~gla~D~~~~~LYw~D  495 (628)
T 4a0p_A          420 -GRSVGVVLKGE-QDRPRAVVVNPEKGYMYFTNLQERSPKIERAALD-GTEREVLFFS-GLSKPIALALDSRLGKLFWAD  495 (628)
T ss_dssp             -SCEEEEEEECT-TCCEEEEEEETTTTEEEEEEEETTEEEEEEEETT-SCSCEEEECS-SCSCEEEEEEETTTTEEEEEE
T ss_pred             -CCeEEEEEeCC-CCceeeEEEecCCCeEEEeecCCCCCeEEEEeCC-CCCcEEEEec-cCCCccEEEEeCCCCEEEEEe
Confidence             55444443321 45678999999 555444443333  57667765 3333333221 233456788888888888877


Q ss_pred             CCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEee
Q 040370          173 EPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWK  225 (228)
Q Consensus       173 ~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd  225 (228)
                      ...+.|...++.. .....+.........+++... +.++.+=...+.|...|
T Consensus       496 ~~~~~I~~~~~dG-~~r~~~~~~~~~~P~glav~~-~~ly~tD~~~~~i~~~~  546 (628)
T 4a0p_A          496 SDLRRIESSDLSG-ANRIVLEDSNILQPVGLTVFE-NWLYWIDKQQQMIEKID  546 (628)
T ss_dssp             TTTTEEEEEETTS-CSCEEEECSSCSCEEEEEEET-TEEEEEETTTTEEEEEE
T ss_pred             CCCCEEEEEeCCC-CceEEEEcCCCCCcEEEEEEC-CEEEEEECCCCeEEEEE
Confidence            7678999999854 444444333344567777654 44444444444554443

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=97.76  E-value=0.0019  Score=48.41  Aligned_cols=115  Identities=16%  Similarity=0.178  Sum_probs=77.9

Q ss_pred             ceEEEEEeCCCCEEEEecCCCeEEEEEcccceEE------------eeeccc--eeeeccceeeEEeCCC---CCeEEEE
Q 040370           21 NVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCY------------LSANVP--EISVNGAINQVRYSST---GGMYVTA   83 (228)
Q Consensus        21 ~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~------------~~~~~~--~~~~~~~i~~~~~~~~---~~~l~~~   83 (228)
                      .|..+..+|+|++||..+. ..|.|-.+..+...            ..+...  ......+|..+.|+|-   +..|++-
T Consensus        67 ~i~qlvlSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVL  145 (452)
T 3pbp_A           67 DTFHVISSTSGDLLCLFND-NEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVL  145 (452)
T ss_dssp             TTCEEEECTTSSEEEEECS-SEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEE
T ss_pred             ceeEEEECCCCCEEEEecC-CeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEE
Confidence            6888999999999998875 47889888733211            111111  0101467999999994   5689999


Q ss_pred             ecCCeEEEEeCCCCce-eeEEecc-------cccceeEEEEECCCCCEEEEee--CCCeEEEE
Q 040370           84 SKDGAIRLWDGVSANC-VRSIVGA-------HGTAEATSANFTKDQRFVLSCG--KDSTVKLW  136 (228)
Q Consensus        84 ~~dg~v~iwd~~~~~~-~~~~~~~-------~~~~~i~~~~~~~~~~~l~~~~--~d~~i~~w  136 (228)
                      ..|+.|++||+..... ...+...       .....+.+++|.+++-.|...+  ++|.|+-.
T Consensus       146 tsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAl  208 (452)
T 3pbp_A          146 KEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFAF  208 (452)
T ss_dssp             ETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred             ecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEEE
Confidence            9999999999986321 1122211       1125788999999887777744  77887654

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=97.74  E-value=0.0063  Score=44.88  Aligned_cols=106  Identities=13%  Similarity=0.149  Sum_probs=61.5

Q ss_pred             CcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEE--eeeccceeeeccceeeEEeCCC---CCeEEEEec-C-----C
Q 040370           19 THNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCY--LSANVPEISVNGAINQVRYSST---GGMYVTASK-D-----G   87 (228)
Q Consensus        19 ~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~---~~~l~~~~~-d-----g   87 (228)
                      -.....++|.|+|+++++ ..+|.|.+++  +++..  ......... ......++++|+   +..|+.+.. .     +
T Consensus        30 l~~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g-~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~  105 (352)
T 2ism_A           30 LEVPWALAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRG-ESGLLGLALHPRFPQEPYVYAYRTVAEGGLRN  105 (352)
T ss_dssp             CSCEEEEEECTTSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCST-TCSEEEEEECTTTTTSCEEEEEEEECTTSSEE
T ss_pred             CCCceEEEEcCCCeEEEE-eCCCeEEEEE--CCCccEeecceEeecC-CCCceeEEECCCCCCCCEEEEEEecCCCCCcc
Confidence            456789999999985554 5569999988  44322  111111111 346789999998   555554433 2     5


Q ss_pred             eEEEEeCCCCce-----e-eEEec-ccccceeEEEEECCCCCEEEEee
Q 040370           88 AIRLWDGVSANC-----V-RSIVG-AHGTAEATSANFTKDQRFVLSCG  128 (228)
Q Consensus        88 ~v~iwd~~~~~~-----~-~~~~~-~~~~~~i~~~~~~~~~~~l~~~~  128 (228)
                      .|..++...+..     + ..+.. .........++|.|+|.+.++.+
T Consensus       106 ~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G  153 (352)
T 2ism_A          106 QVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTG  153 (352)
T ss_dssp             EEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECC
T ss_pred             EEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEEC
Confidence            788888764321     1 11221 00011235799999997666643

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=97.74  E-value=0.0055  Score=44.14  Aligned_cols=187  Identities=13%  Similarity=0.031  Sum_probs=92.4

Q ss_pred             CCCEEEEecC----C-----CeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecC-----CeEEEEeCC
Q 040370           30 SGDFLLAGTD----H-----PIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKD-----GAIRLWDGV   95 (228)
Q Consensus        30 ~~~~l~~~~~----d-----~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~v~iwd~~   95 (228)
                      ++..++.|+.    +     ..+.+||..+.+-......+..  ......+.+  +++.++.|+.+     ..+.+||+.
T Consensus        70 ~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~--r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~  145 (308)
T 1zgk_A           70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVP--RNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPE  145 (308)
T ss_dssp             TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSC--CBTCEEEEE--TTEEEEECCEETTEECCCEEEEETT
T ss_pred             CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcC--ccccEEEEE--CCEEEEEcCCCCCcccccEEEECCC
Confidence            5666667665    2     4578889887764433322211  112222223  56667776643     468889988


Q ss_pred             CCceeeEEecccccceeEEEEECCCCCEEEEeeCC-----CeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEE
Q 040370           96 SANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKD-----STVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLS  170 (228)
Q Consensus        96 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (228)
                      +.+-...-........-..+.+  +++.++.|+.+     ..+.+||+.+.+....-...........+.+  ++..++.
T Consensus       146 ~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~  221 (308)
T 1zgk_A          146 RDEWHLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAA  221 (308)
T ss_dssp             TTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEE
T ss_pred             CCeEeECCCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEE
Confidence            7653322111111111122222  56777777654     4589999987654332111111111112222  4444454


Q ss_pred             eeCC----CCeEEEEEcCCcceeEEeecCC-CCCcEEEEeCCCCcEEEEecCCC-----CEEEeee
Q 040370          171 IDEP----SNEIVIWDALTAEKVAKWSSNH-IGAPRWIEHSPAEAAFITCGTDR-----SVRFWKE  226 (228)
Q Consensus       171 ~~~~----d~~i~i~d~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~s~~~dg-----~i~vwd~  226 (228)
                      +|..    -..+.+||+.+.+-...-.... ......+.+  ++++++.||.++     .+.+||+
T Consensus       222 GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~  285 (308)
T 1zgk_A          222 GGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITVH--QGRIYVLGGYDGHTFLDSVECYDP  285 (308)
T ss_dssp             CCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEET
T ss_pred             eCCCCCCccceEEEEeCCCCcEEECCCCCCCccceEEEEE--CCEEEEEcCcCCCcccceEEEEcC
Confidence            4432    1568999987764332211111 111122222  677788887543     3566664

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=97.72  E-value=0.011  Score=47.07  Aligned_cols=194  Identities=7%  Similarity=-0.003  Sum_probs=110.3

Q ss_pred             cceEEEEEeCCCCEEE-EecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCC-CCeEEEEecCCeEEEEeCCCC
Q 040370           20 HNVRSVSFHPSGDFLL-AGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSST-GGMYVTASKDGAIRLWDGVSA   97 (228)
Q Consensus        20 ~~v~~~~~~~~~~~l~-~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~v~iwd~~~~   97 (228)
                      ..+.+++|.+.+..|+ +-...+.|+.++++...........    -.....+++.+. +++.++-+..+.|.+.++...
T Consensus       349 ~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~----~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~  424 (619)
T 3s94_A          349 RHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQ----IAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGT  424 (619)
T ss_dssp             SSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSS----CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             CccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECC----CCCcCceEEecccCcEEEEeCCCCcEEEEeCCCC
Confidence            3467888888554444 4445778888887653322222111    245678888864 445556566789999998644


Q ss_pred             ceeeEEecccccceeEEEEECCCCCEEEEeeC--CCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCC
Q 040370           98 NCVRSIVGAHGTAEATSANFTKDQRFVLSCGK--DSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPS  175 (228)
Q Consensus        98 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  175 (228)
                      . ...+... .-....++++.|...+|+.+..  .+.|...++.. .....+.. ..-.....+++++.+..++.+....
T Consensus       425 ~-~~~l~~~-~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG-~~~~~l~~-~~l~~P~GlalD~~~~~LY~aD~~~  500 (619)
T 3s94_A          425 M-RKILISE-DLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDG-SDRVVLVN-TSLGWPNGLALDYDEGKIYWGDAKT  500 (619)
T ss_dssp             S-CEEEECT-TCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTS-CSCEEEEC-SSCSCEEEEEEETTTTEEEEEETTT
T ss_pred             e-EEEEEEC-CCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCC-CccEEEEe-CCCCCCeeeEEcccCCEEEEEECCC
Confidence            3 3333322 1446789999996545554432  35677777653 33333321 1233456788888888888877777


Q ss_pred             CeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEE
Q 040370          176 NEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRF  223 (228)
Q Consensus       176 ~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~v  223 (228)
                      +.|..+++..... ..+.........+++...+ .+.++-...+.|..
T Consensus       501 ~~I~~~~~dG~~~-~~~~~~~l~~P~glav~~~-~ly~tD~~~~~I~~  546 (619)
T 3s94_A          501 DKIEVMNTDGTGR-RVLVEDKIPHIFGFTLLGD-YVYWTDWQRRSIER  546 (619)
T ss_dssp             TEEEEEESSSCCC-EEEEECCCCSSCCEEEETT-EEEEECTTSSCEEE
T ss_pred             CEEEEEecCCCce-EEEeccCCCCcEEEEEECC-EEEEeecCCCeEEE
Confidence            8999999854433 2222222223345555433 33333333444443

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=97.63  E-value=0.0097  Score=43.86  Aligned_cols=145  Identities=12%  Similarity=0.161  Sum_probs=83.5

Q ss_pred             cceEEEEEeC--CCC-EEEEe-c--CCCeEEEEEcccce-EEeeeccceeeeccceeeEEeCCCCCeEEEEe--------
Q 040370           20 HNVRSVSFHP--SGD-FLLAG-T--DHPIAHLYDVNTFQ-CYLSANVPEISVNGAINQVRYSSTGGMYVTAS--------   84 (228)
Q Consensus        20 ~~v~~~~~~~--~~~-~l~~~-~--~d~~i~vw~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--------   84 (228)
                      -....+.+.+  ++. +|+++ .  .+..|.+|+++... ............-...+.+.+.++|.+.++..        
T Consensus       112 f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~  191 (355)
T 3sre_A          112 FNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYL  191 (355)
T ss_dssp             CCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHH
T ss_pred             eeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCccc
Confidence            3667777766  343 34433 2  25688888876532 11111111111134678999999998777654        


Q ss_pred             ---------cCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEee-CCCeEEEEEccC-Cee--EEEEecce
Q 040370           85 ---------KDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCG-KDSTVKLWEVSS-GRL--VKQYLGAT  151 (228)
Q Consensus        85 ---------~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~i~~wd~~~-~~~--~~~~~~~~  151 (228)
                               ..|.|.-+|.  ++. ..+...  -...+.++|+||++.++.+. ..+.|..||+.. ++.  ...+.   
T Consensus       192 ~~~e~~~~~~~g~vyr~d~--~~~-~~~~~~--l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~---  263 (355)
T 3sre_A          192 KSWEMHLGLAWSFVTYYSP--NDV-RVVAEG--FDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLS---  263 (355)
T ss_dssp             HHHHHHTTCCCEEEEEECT--TCC-EEEEEE--ESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEE---
T ss_pred             ccchhhccCCccEEEEEEC--CeE-EEeecC--CcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEe---
Confidence                     1245666665  332 222221  33568899999998776654 567899999863 322  12221   


Q ss_pred             eeeeeeEEEECC-CCcEEEEee
Q 040370          152 HTQLRFQAVFND-TEEFVLSID  172 (228)
Q Consensus       152 ~~~~~~~~~~~~-~~~~~~~~~  172 (228)
                      .....-.++..+ +|.+.+++.
T Consensus       264 ~~g~PDGi~vD~e~G~lwva~~  285 (355)
T 3sre_A          264 FDTLVDNISVDPVTGDLWVGCH  285 (355)
T ss_dssp             CSSEEEEEEECTTTCCEEEEEE
T ss_pred             CCCCCceEEEeCCCCcEEEEec
Confidence            234455677788 477766544

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=97.59  E-value=0.0095  Score=42.71  Aligned_cols=150  Identities=8%  Similarity=0.088  Sum_probs=76.1

Q ss_pred             CCCEEEEecCCC-----eEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecC-------CeEEEEeCCCC
Q 040370           30 SGDFLLAGTDHP-----IAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKD-------GAIRLWDGVSA   97 (228)
Q Consensus        30 ~~~~l~~~~~d~-----~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-------g~v~iwd~~~~   97 (228)
                      ++..++.|+.++     .+.+||+.+.+-......+..  .....++.+  +++.++.|+.+       ..+.+||+.+.
T Consensus       108 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~--r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~  183 (302)
T 2xn4_A          108 NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTR--RSSVGVGVV--GGLLYAVGGYDVASRQCLSTVECYNATTN  183 (302)
T ss_dssp             TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSC--CBSCEEEEE--TTEEEEECCEETTTTEECCCEEEEETTTT
T ss_pred             CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCc--ccCceEEEE--CCEEEEEeCCCCCCCccccEEEEEeCCCC
Confidence            566667776543     577888887664433222211  111122222  56666666542       35889998876


Q ss_pred             ceeeEEecccccceeEEEEECCCCCEEEEeeCC-----CeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEee
Q 040370           98 NCVRSIVGAHGTAEATSANFTKDQRFVLSCGKD-----STVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSID  172 (228)
Q Consensus        98 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (228)
                      +-...-...........+.+  +++.++.|+.+     ..+.+||+.+.+....-... .......++. .++..++.+|
T Consensus       184 ~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~-~~r~~~~~~~-~~~~i~v~GG  259 (302)
T 2xn4_A          184 EWTYIAEMSTRRSGAGVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMN-MCRRNAGVCA-VNGLLYVVGG  259 (302)
T ss_dssp             EEEEECCCSSCCBSCEEEEE--TTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCS-SCCBSCEEEE-ETTEEEEECC
T ss_pred             cEEECCCCccccccccEEEE--CCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCC-CccccCeEEE-ECCEEEEECC
Confidence            54332211111111122222  56777777764     36899999876544322111 1111111222 2455555544


Q ss_pred             CCC----CeEEEEEcCCcc
Q 040370          173 EPS----NEIVIWDALTAE  187 (228)
Q Consensus       173 ~~d----~~i~i~d~~~~~  187 (228)
                      ...    ..+.+||..+.+
T Consensus       260 ~~~~~~~~~v~~yd~~~~~  278 (302)
T 2xn4_A          260 DDGSCNLASVEYYNPTTDK  278 (302)
T ss_dssp             BCSSSBCCCEEEEETTTTE
T ss_pred             cCCCcccccEEEEcCCCCe
Confidence            321    348889987654

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=97.59  E-value=0.0094  Score=42.67  Aligned_cols=187  Identities=12%  Similarity=0.058  Sum_probs=93.2

Q ss_pred             CCCEEEEec-CC-----CeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecC-----CeEEEEeCCCCc
Q 040370           30 SGDFLLAGT-DH-----PIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKD-----GAIRLWDGVSAN   98 (228)
Q Consensus        30 ~~~~l~~~~-~d-----~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~v~iwd~~~~~   98 (228)
                      ++..++.|+ .+     ..+.+||..+.+-......+..  ......+.  .++..++.|+.+     ..+.+||+.+.+
T Consensus        14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~--r~~~~~~~--~~~~l~v~GG~~~~~~~~~~~~~d~~~~~   89 (301)
T 2vpj_A           14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRK--RRYVASVS--LHDRIYVIGGYDGRSRLSSVECLDYTADE   89 (301)
T ss_dssp             CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSC--CBSCEEEE--ETTEEEEECCBCSSCBCCCEEEEETTCCT
T ss_pred             CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChh--hccccEEE--ECCEEEEEcCCCCCccCceEEEEECCCCC
Confidence            455666666 32     3688999888764433222211  11112222  256677777754     468999988766


Q ss_pred             ---eeeEEecccccceeEEEEECCCCCEEEEeeCC-----CeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEE
Q 040370           99 ---CVRSIVGAHGTAEATSANFTKDQRFVLSCGKD-----STVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLS  170 (228)
Q Consensus        99 ---~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (228)
                         -...-...........+.+  +++.++.|+.+     ..+.+||+.+.+....-...........+..  ++..++.
T Consensus        90 ~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~  165 (301)
T 2vpj_A           90 DGVWYSVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA--SGVIYCL  165 (301)
T ss_dssp             TCCCEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE--TTEEEEE
T ss_pred             CCeeEECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEE--CCEEEEE
Confidence               3322211111111222222  56777777654     3688999887664433221111111112222  4555455


Q ss_pred             eeCC----CCeEEEEEcCCcceeEEeecCCC-CCcEEEEeCCCCcEEEEecCC-----CCEEEeee
Q 040370          171 IDEP----SNEIVIWDALTAEKVAKWSSNHI-GAPRWIEHSPAEAAFITCGTD-----RSVRFWKE  226 (228)
Q Consensus       171 ~~~~----d~~i~i~d~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~s~~~d-----g~i~vwd~  226 (228)
                      +|..    -..+.+||..+.+-...-..... .....+.+  ++.+++.|+.+     ..+.+||+
T Consensus       166 GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~  229 (301)
T 2vpj_A          166 GGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNI  229 (301)
T ss_dssp             CCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEET
T ss_pred             CCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEE--CCEEEEEeCCCCCcccceEEEEeC
Confidence            4432    14688999877643322111111 11122222  56777777764     35777765

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=97.50  E-value=0.015  Score=42.88  Aligned_cols=144  Identities=15%  Similarity=0.166  Sum_probs=80.8

Q ss_pred             ceeeEEeCCCCCeEEEEecCCeEEEEeCCCCc-eeeEEe-cccccceeEEEEECCC---CCEEEEeeC----C----CeE
Q 040370           67 AINQVRYSSTGGMYVTASKDGAIRLWDGVSAN-CVRSIV-GAHGTAEATSANFTKD---QRFVLSCGK----D----STV  133 (228)
Q Consensus        67 ~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~-~~~~~~-~~~~~~~i~~~~~~~~---~~~l~~~~~----d----~~i  133 (228)
                      ....++|.|+|+ |+.+..+|.|+++| ..++ .+..+. ..........++++|+   +..|+.+..    +    ..|
T Consensus        30 ~P~~ia~~pdG~-l~V~e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v  107 (354)
T 3a9g_A           30 VPWSIAPLGGGR-YLVTERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRV  107 (354)
T ss_dssp             CEEEEEEEETTE-EEEEETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEE
T ss_pred             CCeEEEEcCCCe-EEEEeCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEE
Confidence            467899999997 45556669999997 3454 111111 1111345789999997   455554433    3    567


Q ss_pred             EEEEccCC--e-----eE-EEEecceeeeeeeEEEECCCCcEEEEeeCC------------CCeEEEEEcCCcc------
Q 040370          134 KLWEVSSG--R-----LV-KQYLGATHTQLRFQAVFNDTEEFVLSIDEP------------SNEIVIWDALTAE------  187 (228)
Q Consensus       134 ~~wd~~~~--~-----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------d~~i~i~d~~~~~------  187 (228)
                      ..|+....  .     .+ ..+.. ........+.|.|++...++.+..            .|.|.-++.. ++      
T Consensus       108 ~r~~~~~~~~~~~~~~~l~~~~~~-~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~d-G~~p~~np  185 (354)
T 3a9g_A          108 IRGRLDGSTFKLKEVKTLIDGIPG-AYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEE-GRPPADNP  185 (354)
T ss_dssp             EEEEECSSSCCEEEEEEEEEEEEC-CSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTT-SCCCTTSS
T ss_pred             EEEEECCCCcCcCccEEEEEcCCC-CCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCC-CCCCCCCC
Confidence            77887643  1     11 11111 111224568899999876665431            2456666653 22      


Q ss_pred             --eeEEeecCCCCCcEEEEeCC-CCcEEEEe
Q 040370          188 --KVAKWSSNHIGAPRWIEHSP-AEAAFITC  215 (228)
Q Consensus       188 --~~~~~~~~~~~~v~~~~~~~-~~~~l~s~  215 (228)
                        ....+..++. ....++|+| ++.++++-
T Consensus       186 f~~~~i~a~G~r-np~Gla~d~~~g~l~v~d  215 (354)
T 3a9g_A          186 FPNSPIWSYGHR-NPQGIDWHRASGVMVATE  215 (354)
T ss_dssp             STTCCEEEECCS-CCCEEEECTTTCCEEEEE
T ss_pred             CCCCcEEEEccC-CcceEEEeCCCCCEEEEe
Confidence              1112223443 356799999 66655543

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=97.49  E-value=0.02  Score=43.85  Aligned_cols=107  Identities=10%  Similarity=0.176  Sum_probs=61.6

Q ss_pred             ceeeEEeCCCCCeEEEEecCCeEEEEeCCCCceeeE--Eecc----cccceeEEEEECCC---CCEEEEeeC--------
Q 040370           67 AINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRS--IVGA----HGTAEATSANFTKD---QRFVLSCGK--------  129 (228)
Q Consensus        67 ~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~--~~~~----~~~~~i~~~~~~~~---~~~l~~~~~--------  129 (228)
                      ....|+|.|+|+++++-...+.|++++..+++....  +...    ........++|+|+   +..|+.+..        
T Consensus        28 ~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~~  107 (454)
T 1cru_A           28 KPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKSTD  107 (454)
T ss_dssp             SEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC--
T ss_pred             CceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCCc
Confidence            457899999998766654445788888655543222  2110    12456779999995   555544432        


Q ss_pred             -----CCeEEEEEccCC--e-----eEEEEecceeeeeeeEEEECCCCcEEEEeeC
Q 040370          130 -----DSTVKLWEVSSG--R-----LVKQYLGATHTQLRFQAVFNDTEEFVLSIDE  173 (228)
Q Consensus       130 -----d~~i~~wd~~~~--~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (228)
                           ...|.-+++...  +     .+..............+.|.|++.+.++.+.
T Consensus       108 ~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd  163 (454)
T 1cru_A          108 KELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD  163 (454)
T ss_dssp             CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred             cccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence                 235666665432  1     1111111111234578899999987777664

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=97.47  E-value=0.015  Score=42.04  Aligned_cols=181  Identities=12%  Similarity=0.050  Sum_probs=86.2

Q ss_pred             eCCCCEEEEecC----CC-------eEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecC-------CeE
Q 040370           28 HPSGDFLLAGTD----HP-------IAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKD-------GAI   89 (228)
Q Consensus        28 ~~~~~~l~~~~~----d~-------~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-------g~v   89 (228)
                      ..++..++.|+.    ++       .+.+||..+.+-......+..  ......+.+  +++.++.|+.+       ..+
T Consensus        54 ~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~--r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~  129 (318)
T 2woz_A           54 TQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSA--RCLFGLGEV--DDKIYVVAGKDLQTEASLDSV  129 (318)
T ss_dssp             CSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSC--BCSCEEEEE--TTEEEEEEEEBTTTCCEEEEE
T ss_pred             EECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCcc--ccccceEEE--CCEEEEEcCccCCCCcccceE
Confidence            346777777773    11       277888877664433222221  111122222  56677777754       358


Q ss_pred             EEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeC------CCeEEEEEccCCeeEEEEecceeeeeeeEEEECC
Q 040370           90 RLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGK------DSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFND  163 (228)
Q Consensus        90 ~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~------d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (228)
                      .+||+.+.+-...-.... ...-.+++. .+++.++.|+.      -..+.+||+.+.+....-... .......++.. 
T Consensus       130 ~~yd~~~~~W~~~~~~p~-~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p-~~r~~~~~~~~-  205 (318)
T 2woz_A          130 LCYDPVAAKWSEVKNLPI-KVYGHNVIS-HNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMK-TPRSMFGVAIH-  205 (318)
T ss_dssp             EEEETTTTEEEEECCCSS-CEESCEEEE-ETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCS-SCCBSCEEEEE-
T ss_pred             EEEeCCCCCEeECCCCCC-cccccEEEE-ECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCC-CCcccceEEEE-
Confidence            888988765433221111 111112222 35666677764      235899999887644322111 11111122222 


Q ss_pred             CCcEEEEeeCCC----CeEEEEEcCCcceeEEeecCC-CCCcEEEEeCCCCcEEEEecCC
Q 040370          164 TEEFVLSIDEPS----NEIVIWDALTAEKVAKWSSNH-IGAPRWIEHSPAEAAFITCGTD  218 (228)
Q Consensus       164 ~~~~~~~~~~~d----~~i~i~d~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~s~~~d  218 (228)
                      ++..++.+|..+    ..+.+||..+.+-...-.... ......+.+  ++++++.||.+
T Consensus       206 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~  263 (318)
T 2woz_A          206 KGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSISLVSL--AGSLYAIGGFA  263 (318)
T ss_dssp             TTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBSCEEEEE--TTEEEEECCBC
T ss_pred             CCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcccceEEEEE--CCEEEEECCee
Confidence            445445544322    357788987764322210111 111122222  56777777754

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=97.45  E-value=0.018  Score=42.52  Aligned_cols=106  Identities=11%  Similarity=0.064  Sum_probs=61.1

Q ss_pred             CcceEEEEEeCCCCEEEEecCCCeEEEEEcccce-EEeeeccceeeeccceeeEEeCCC---CCeEEEEec----C----
Q 040370           19 THNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQ-CYLSANVPEISVNGAINQVRYSST---GGMYVTASK----D----   86 (228)
Q Consensus        19 ~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~---~~~l~~~~~----d----   86 (228)
                      -.....++|.|++++++ +..+|.|++++ .+++ .+......... ......|+++|+   +..|+.+..    +    
T Consensus        28 l~~P~~ia~~pdG~l~V-~e~~g~I~~~d-~~G~~~~~~~~v~~~g-~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~  104 (354)
T 3a9g_A           28 LEVPWSIAPLGGGRYLV-TERPGRLVLIS-PSGKKLVASFDVANVG-EAGLLGLALHPEFPKKSWVYLYASYFAEGGHIR  104 (354)
T ss_dssp             CSCEEEEEEEETTEEEE-EETTTEEEEEC-SSCEEEEEECCCCCST-TCSEEEEEECTTTTTSCEEEEEEEEECGGGCEE
T ss_pred             CCCCeEEEEcCCCeEEE-EeCCCEEEEEe-CCCceEeeccceeecC-CCceeeEEeCCCCCcCCEEEEEEeccCCCCCcc
Confidence            45678999999998555 45569999887 3444 21111110111 346789999997   444544433    3    


Q ss_pred             CeEEEEeCCCC--c-----ee-eEEecccccceeEEEEECCCCCEEEEee
Q 040370           87 GAIRLWDGVSA--N-----CV-RSIVGAHGTAEATSANFTKDQRFVLSCG  128 (228)
Q Consensus        87 g~v~iwd~~~~--~-----~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~  128 (228)
                      ..|..++....  .     .+ ..+.... ......+.|.|+|.++++.+
T Consensus       105 ~~v~r~~~~~~~~~~~~~~~l~~~~~~~~-~h~~~~l~~~pDG~Lyvt~G  153 (354)
T 3a9g_A          105 NRVIRGRLDGSTFKLKEVKTLIDGIPGAY-IHNGGRIRFGPDGMLYITTG  153 (354)
T ss_dssp             EEEEEEEECSSSCCEEEEEEEEEEEECCS-SCCCCCEEECTTSCEEEECC
T ss_pred             eEEEEEEECCCCcCcCccEEEEEcCCCCC-CcCCceEEECCCCcEEEEEC
Confidence            56777776543  1     11 1122110 11235689999998766644

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=97.43  E-value=0.0021  Score=43.74  Aligned_cols=109  Identities=10%  Similarity=0.021  Sum_probs=63.5

Q ss_pred             cceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeecc-cee---eeccceeeEEeCCCCCeEEEEecCCeEEEEeCC
Q 040370           20 HNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANV-PEI---SVNGAINQVRYSSTGGMYVTASKDGAIRLWDGV   95 (228)
Q Consensus        20 ~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~-~~~---~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~   95 (228)
                      ..+..++|+|++.+.++  .+|.+.-.+..+.....-... ...   . -....++.|.|+|.+.++  .||.|.-++..
T Consensus        41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~G-w~~F~a~~fD~~G~LYav--~dG~iyr~~pP  115 (236)
T 1tl2_A           41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGG-WNQFQFLFFDPNGYLYAV--SKDKLYKASPP  115 (236)
T ss_dssp             TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSC-GGGCSEEEECTTSCEEEE--ETTEEEEESCC
T ss_pred             ccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEecccc-cccceEEEECCCCCEEEe--CCCEEEEeCCC
Confidence            47889999999987666  667655544433111000000 000   0 112478999999987766  56999888764


Q ss_pred             CCceee-----EEecccccceeEEEEECCCCCEEEEeeCCCeEEE
Q 040370           96 SANCVR-----SIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKL  135 (228)
Q Consensus        96 ~~~~~~-----~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~  135 (228)
                      +.....     .......=..+..+.+.|+|.+.+..  |+.++-
T Consensus       116 ~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr  158 (236)
T 1tl2_A          116 QSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYK  158 (236)
T ss_dssp             CSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEE
T ss_pred             cCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEe
Confidence            322111     11111112467899999999876666  777543

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=97.41  E-value=0.018  Score=41.49  Aligned_cols=187  Identities=12%  Similarity=0.001  Sum_probs=91.9

Q ss_pred             CCCEEEEecC----CCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEec----C-----CeEEEEeCCC
Q 040370           30 SGDFLLAGTD----HPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASK----D-----GAIRLWDGVS   96 (228)
Q Consensus        30 ~~~~l~~~~~----d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----d-----g~v~iwd~~~   96 (228)
                      ++..++.|+.    -..+.+||..+.+-......+..  ...-..+..  ++..++.|+.    +     ..+.+||+.+
T Consensus        24 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~--r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~   99 (308)
T 1zgk_A           24 GRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVP--RSGLAGCVV--GGLLYAVGGRNNSPDGNTDSSALDCYNPMT   99 (308)
T ss_dssp             CCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSC--CBSCEEEEE--TTEEEEECCEEEETTEEEECCCEEEEETTT
T ss_pred             CCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcc--cccceEEEE--CCEEEEECCCcCCCCCCeecceEEEECCCC
Confidence            5666777763    24688999988764433222211  111122222  5666777665    2     4688899887


Q ss_pred             CceeeEEecccccceeEEEEECCCCCEEEEeeCC-----CeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEe
Q 040370           97 ANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKD-----STVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSI  171 (228)
Q Consensus        97 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (228)
                      .+-...-...........+.+  +++.++.|+.+     ..+.+||+.+.+....-...........+.+  ++..++.+
T Consensus       100 ~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~G  175 (308)
T 1zgk_A          100 NQWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRLLYAVG  175 (308)
T ss_dssp             TEEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEEC
T ss_pred             CeEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CCEEEEEe
Confidence            653322111111111122222  56677777643     3588999987654332211111111112222  44444444


Q ss_pred             eCC----CCeEEEEEcCCcceeEEeecCC-CCCcEEEEeCCCCcEEEEecCC-----CCEEEeee
Q 040370          172 DEP----SNEIVIWDALTAEKVAKWSSNH-IGAPRWIEHSPAEAAFITCGTD-----RSVRFWKE  226 (228)
Q Consensus       172 ~~~----d~~i~i~d~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~s~~~d-----g~i~vwd~  226 (228)
                      |..    -..+.+||..+.+-...-.... ...-..+.+  ++++++.||.+     ..+.+||+
T Consensus       176 G~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~  238 (308)
T 1zgk_A          176 GFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDV  238 (308)
T ss_dssp             CBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEET
T ss_pred             CCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeC
Confidence            432    1468899987664322111111 111222333  67777777764     44777765

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=97.40  E-value=0.021  Score=42.12  Aligned_cols=145  Identities=14%  Similarity=0.174  Sum_probs=80.1

Q ss_pred             ceeeEEeCCCCCeEEEEecCCeEEEEeCCCCcee--eEEe-cccccceeEEEEECCC---CCEEEEeeC-C-----CeEE
Q 040370           67 AINQVRYSSTGGMYVTASKDGAIRLWDGVSANCV--RSIV-GAHGTAEATSANFTKD---QRFVLSCGK-D-----STVK  134 (228)
Q Consensus        67 ~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~--~~~~-~~~~~~~i~~~~~~~~---~~~l~~~~~-d-----~~i~  134 (228)
                      ....++|.|+|++++ +..+|.|.+++  .++..  ..+. ..........++++|+   +..|+.+.. .     +.|.
T Consensus        32 ~P~~ia~~pdG~l~V-~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~  108 (352)
T 2ism_A           32 VPWALAFLPDGGMLI-AERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVV  108 (352)
T ss_dssp             CEEEEEECTTSCEEE-EETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEE
T ss_pred             CceEEEEcCCCeEEE-EeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEE
Confidence            457899999998554 55679999998  34321  1111 1111346789999998   555554433 2     5788


Q ss_pred             EEEccCCee-----EEE-Eec-ceeeeeeeEEEECCCCcEEEEeeCC------------CCeEEEEEcCCc---------
Q 040370          135 LWEVSSGRL-----VKQ-YLG-ATHTQLRFQAVFNDTEEFVLSIDEP------------SNEIVIWDALTA---------  186 (228)
Q Consensus       135 ~wd~~~~~~-----~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~------------d~~i~i~d~~~~---------  186 (228)
                      .++...+..     +.. +.. .........+.|.|++...++.+..            .+.|.-++....         
T Consensus       109 r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~~  188 (352)
T 2ism_A          109 RLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPFLG  188 (352)
T ss_dssp             EEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTTT
T ss_pred             EEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCcccC
Confidence            888764321     111 210 0111233578899999766664421            156666665420         


Q ss_pred             ---ceeEEeecCCCCCcEEEEeCC-CCcEEEEe
Q 040370          187 ---EKVAKWSSNHIGAPRWIEHSP-AEAAFITC  215 (228)
Q Consensus       187 ---~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~  215 (228)
                         .....+..++. ....++|+| ++.++++-
T Consensus       189 ~~~~~~~i~a~G~r-np~g~a~d~~~g~l~v~d  220 (352)
T 2ism_A          189 RRGARPEVYSLGHR-NPQGLAWHPKTGELFSSE  220 (352)
T ss_dssp             CTTSCTTEEEECCS-EECCCEECTTTCCEEEEE
T ss_pred             CCCCCccEEEEcCC-CcccEEEECCCCCEEEEE
Confidence               11111212332 356789999 66655543

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=97.40  E-value=0.021  Score=41.98  Aligned_cols=147  Identities=10%  Similarity=0.069  Sum_probs=84.1

Q ss_pred             cceeeEEeCCCCCeEEEEecCCeEEEEeCCCCceeeE--Ee--cccccceeEEEEECCC---CCEEEEe---eCCCeEEE
Q 040370           66 GAINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRS--IV--GAHGTAEATSANFTKD---QRFVLSC---GKDSTVKL  135 (228)
Q Consensus        66 ~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~--~~--~~~~~~~i~~~~~~~~---~~~l~~~---~~d~~i~~  135 (228)
                      .....|+|.|+|.++++--..|.|++++...++....  +.  ..........++++|+   +..|+..   ..++.|.-
T Consensus        32 ~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R  111 (347)
T 3das_A           32 NSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIVR  111 (347)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEEE
T ss_pred             CCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEEE
Confidence            3467899999999777665589999998765543221  11  0122456789999995   3444432   24456666


Q ss_pred             EEccCC----------eeEE-EEecceeeeeeeEEEECCCCcEEEEeeCC------------CCeEEEEEcCCcc-----
Q 040370          136 WEVSSG----------RLVK-QYLGATHTQLRFQAVFNDTEEFVLSIDEP------------SNEIVIWDALTAE-----  187 (228)
Q Consensus       136 wd~~~~----------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------d~~i~i~d~~~~~-----  187 (228)
                      |.+..+          +.+. .+.. ........+.|.|++.+.++.+..            .|.|.-.+....-     
T Consensus       112 ~~~~~~~~~~~~~~~~~~i~~~~p~-~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~nP  190 (347)
T 3das_A          112 MLYDEKKPSGEQLGAPDTVFRGIPK-GVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPGNP  190 (347)
T ss_dssp             EEBCTTSCTTCCBCCCEEEEEEECC-CSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTTCS
T ss_pred             EEeCCCCcccccCCCcEEEEEcCCC-CCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCCCC
Confidence            666541          1111 1111 112234568899999877776531            2555555543220     


Q ss_pred             --eeEEeecCCCCCcEEEEeCCCCcEEEE
Q 040370          188 --KVAKWSSNHIGAPRWIEHSPAEAAFIT  214 (228)
Q Consensus       188 --~~~~~~~~~~~~v~~~~~~~~~~~l~s  214 (228)
                        ....+..+|. ....++|+|++.+.++
T Consensus       191 f~~~~i~a~G~R-Np~Gla~dp~G~L~~~  218 (347)
T 3das_A          191 FPGSPVYSYGHR-NVQGLAWDDKQRLFAS  218 (347)
T ss_dssp             STTCCEEEBCCS-BCCEEEECTTCCEEEE
T ss_pred             CCCCeEEeeCCC-CcceEEECCCCCEEEE
Confidence              1112223554 3567999998776554

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=97.39  E-value=0.011  Score=44.33  Aligned_cols=106  Identities=9%  Similarity=0.218  Sum_probs=69.9

Q ss_pred             CCCCEEEEeeCCCeEEEEEccCCeeEEEEecce--eeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcc---------
Q 040370          119 KDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGAT--HTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAE---------  187 (228)
Q Consensus       119 ~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~---------  187 (228)
                      .++..++.+ .++.||.-++.....-+.+....  ....+..+..+|+|.+++..|.  ..|.|-.+..+.         
T Consensus        30 ~n~t~i~~a-~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~--~~V~Vv~LP~~~~~~~~~~~~  106 (452)
T 3pbp_A           30 QNGTRIVFI-QDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFND--NEIFVMEVPWGYSNVEDVSIQ  106 (452)
T ss_dssp             TTTTEEEEE-ETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECS--SEEEEEECCTTCSCCCCHHHH
T ss_pred             cCCCEEEEE-ECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecC--CeEEEEEecCccccCcccccc
Confidence            345555544 34677777776443333333321  1224567999999999999875  789998887322         


Q ss_pred             ---eeEEeecC-----CCCCcEEEEeCC---CCcEEEEecCCCCEEEeeec
Q 040370          188 ---KVAKWSSN-----HIGAPRWIEHSP---AEAAFITCGTDRSVRFWKEI  227 (228)
Q Consensus       188 ---~~~~~~~~-----~~~~v~~~~~~~---~~~~l~s~~~dg~i~vwd~~  227 (228)
                         ....+..+     ...+|..+.|+|   .+..|++-..|+.|++||+.
T Consensus       107 ~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~  157 (452)
T 3pbp_A          107 DAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDIL  157 (452)
T ss_dssp             HTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETT
T ss_pred             cccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcc
Confidence               11122111     357899999999   45688989999999999975

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=97.29  E-value=0.069  Score=45.85  Aligned_cols=192  Identities=12%  Similarity=0.111  Sum_probs=101.7

Q ss_pred             ecCcceEEEEEeCC------CCEEEEecC-CCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeE
Q 040370           17 QDTHNVRSVSFHPS------GDFLLAGTD-HPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAI   89 (228)
Q Consensus        17 ~~~~~v~~~~~~~~------~~~l~~~~~-d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v   89 (228)
                      .-...|.|+++.|.      ++++++|.. |++++|+++.+.+.+.............+.-+.+ ....+|..|-.||.+
T Consensus       551 ~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~-~~~~~L~igl~dG~l  629 (1158)
T 3ei3_A          551 EMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTF-ESSHYLLCALGDGAL  629 (1158)
T ss_dssp             ECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEE-TTEEEEEEEETTSEE
T ss_pred             CCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEe-CCCcEEEEEeCCCeE
Confidence            34678999999863      468999986 9999999998876654433321110122333333 234578899999998


Q ss_pred             EEEeC--CCCceeeE--EecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCC-
Q 040370           90 RLWDG--VSANCVRS--IVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDT-  164 (228)
Q Consensus        90 ~iwd~--~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-  164 (228)
                      .-+.+  .+++....  ....  ..++.-..+...+..-+-+..+....+|--+ ++....-..  .........|+.. 
T Consensus       630 ~~~~~d~~tg~l~d~r~~~LG--~~pv~L~~~~~~~~~~V~a~s~rp~liy~~~-~~l~~s~l~--~~~v~~~~~F~se~  704 (1158)
T 3ei3_A          630 FYFGLNIETGLLSDRKKVTLG--TQPTVLRTFRSLSTTNVFACSDRPTVIYSSN-HKLVFSNVN--LKEVNYMCPLNSDG  704 (1158)
T ss_dssp             EEEEECTTTCCEEEEEEEECC--SSCCEEEEEESSSCEEEEEESSSCEEEEESS-SSEEEEEBS--SSCCCEEEEECCSS
T ss_pred             EEEEEcCCCCccccceeEEcC--CCceEEEEEeeCCceeEEEECCCCEEEEEcC-CceEEeccC--hHHhceEeccCccc
Confidence            66654  34443322  1221  3344444444434333333334545555433 332211111  1112223344432 


Q ss_pred             -CcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEec
Q 040370          165 -EEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCG  216 (228)
Q Consensus       165 -~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~  216 (228)
                       ..-++...  ++.++|..+...+........-...+..++++|+.+.++.+.
T Consensus       705 ~~~g~v~~~--~~~LrI~~i~~~~~~~~~~ipL~~Tprri~y~~~~~~~~v~~  755 (1158)
T 3ei3_A          705 YPDSLALAN--NSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLS  755 (1158)
T ss_dssp             STTEEEEEC--SSCEEEEEECCSSSEEEEEEECSSEEEEEEEEGGGTEEEEEE
T ss_pred             CCCcEEEEc--CCceEEEEecccCCeeEEEEeCCCCceEEEEcCCCCEEEEEE
Confidence             22333333  356998887554433322223456789999999777655443

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=97.28  E-value=0.05  Score=44.05  Aligned_cols=157  Identities=11%  Similarity=0.145  Sum_probs=82.4

Q ss_pred             CCCEEEEecCC------CeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCC--eEEEEeCCCCceee
Q 040370           30 SGDFLLAGTDH------PIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDG--AIRLWDGVSANCVR  101 (228)
Q Consensus        30 ~~~~l~~~~~d------~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg--~v~iwd~~~~~~~~  101 (228)
                      +++.++.|+.+      ..+.+||..+.+-......+.   ...-.+++...+++.++.|+.++  .+.+||+.+.+-..
T Consensus       451 ~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~---~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~  527 (695)
T 2zwa_A          451 NNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSH---TRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKD  527 (695)
T ss_dssp             TTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSB---CCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEE
T ss_pred             CCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCC---CcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEE
Confidence            66677777643      357889988865433322221   11112233323778888887654  69999988765332


Q ss_pred             EEe---cccccceeEEEEECCC-CCEEEEeeC--C-----CeEEEEEccCCee-----EEEEec-ceeeeeeeEEEECCC
Q 040370          102 SIV---GAHGTAEATSANFTKD-QRFVLSCGK--D-----STVKLWEVSSGRL-----VKQYLG-ATHTQLRFQAVFNDT  164 (228)
Q Consensus       102 ~~~---~~~~~~~i~~~~~~~~-~~~l~~~~~--d-----~~i~~wd~~~~~~-----~~~~~~-~~~~~~~~~~~~~~~  164 (228)
                      .-.   .........++.+..+ ++.++.|+.  +     ..+..||+.+.+.     -..+.. .........+....+
T Consensus       528 ~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~  607 (695)
T 2zwa_A          528 VTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITP  607 (695)
T ss_dssp             CCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEET
T ss_pred             ccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCC
Confidence            221   1111112233445554 667777765  2     4589999988762     112211 101111122222232


Q ss_pred             CcEEEEeeCC-------CCeEEEEEcCCccee
Q 040370          165 EEFVLSIDEP-------SNEIVIWDALTAEKV  189 (228)
Q Consensus       165 ~~~~~~~~~~-------d~~i~i~d~~~~~~~  189 (228)
                      +..++.+|..       ...+.+||..+.+-.
T Consensus       608 ~~iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~  639 (695)
T 2zwa_A          608 RKLLIVGGTSPSGLFDRTNSIISLDPLSETLT  639 (695)
T ss_dssp             TEEEEECCBCSSCCCCTTTSEEEEETTTTEEE
T ss_pred             CEEEEECCccCCCCCCCCCeEEEEECCCCeEE
Confidence            5555555431       356999998876543

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=97.28  E-value=0.025  Score=40.53  Aligned_cols=185  Identities=7%  Similarity=0.011  Sum_probs=92.5

Q ss_pred             CEEEEecC--CCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecC----CeEEEEeCCCCceeeEEec
Q 040370           32 DFLLAGTD--HPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKD----GAIRLWDGVSANCVRSIVG  105 (228)
Q Consensus        32 ~~l~~~~~--d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d----g~v~iwd~~~~~~~~~~~~  105 (228)
                      ..++.|+.  ...+.+||..+.+-......+..  ......+.+  ++..++.|+.+    ..+.+||+.+.+-...-..
T Consensus        13 ~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~--r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~   88 (306)
T 3ii7_A           13 YRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEK--RRDAACVFW--DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGP   88 (306)
T ss_dssp             EEEEEECCSSTTSEEEEETTTTEEEECCCCSCC--CBSCEEEEE--TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECC
T ss_pred             eEEEEeCCCCCceEEEecCCCCCEecCCCCCcc--cceeEEEEE--CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCC
Confidence            34555654  35788999988764433322221  111222222  56677777754    6788999887754333222


Q ss_pred             ccccceeEEEEECCCCCEEEEeeCC------CeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCC-----
Q 040370          106 AHGTAEATSANFTKDQRFVLSCGKD------STVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEP-----  174 (228)
Q Consensus       106 ~~~~~~i~~~~~~~~~~~l~~~~~d------~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----  174 (228)
                      .........+.+  +++.++.|+.+      ..+.+||+.+.+....-... .......++. -++...+.+|..     
T Consensus        89 p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p-~~r~~~~~~~-~~~~iyv~GG~~~~~~~  164 (306)
T 3ii7_A           89 PTPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSML-TQRCSHGMVE-ANGLIYVCGGSLGNNVS  164 (306)
T ss_dssp             SSCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCS-SCCBSCEEEE-ETTEEEEECCEESCTTT
T ss_pred             CccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCc-CCcceeEEEE-ECCEEEEECCCCCCCCc
Confidence            211112222222  56777777765      45899999887643321111 1111111222 244444444321     


Q ss_pred             ---CCeEEEEEcCCcceeEEeecCCC-CCcEEEEeCCCCcEEEEecCCC-----CEEEeee
Q 040370          175 ---SNEIVIWDALTAEKVAKWSSNHI-GAPRWIEHSPAEAAFITCGTDR-----SVRFWKE  226 (228)
Q Consensus       175 ---d~~i~i~d~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~s~~~dg-----~i~vwd~  226 (228)
                         -..+.+||..+.+-...-..... ..-..+.+  ++++++.||.++     .+.+||+
T Consensus       165 ~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~  223 (306)
T 3ii7_A          165 GRVLNSCEVYDPATETWTELCPMIEARKNHGLVFV--KDKIFAVGGQNGLGGLDNVEYYDI  223 (306)
T ss_dssp             CEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTEEBCCEEEEET
T ss_pred             ccccceEEEeCCCCCeEEECCCccchhhcceEEEE--CCEEEEEeCCCCCCCCceEEEeeC
Confidence               24588999877643222111111 11122222  667777777543     4666664

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=97.26  E-value=0.016  Score=41.80  Aligned_cols=110  Identities=12%  Similarity=0.166  Sum_probs=59.2

Q ss_pred             CCCEEEEecCC--------CeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEec-C-----CeEEEEeCC
Q 040370           30 SGDFLLAGTDH--------PIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASK-D-----GAIRLWDGV   95 (228)
Q Consensus        30 ~~~~l~~~~~d--------~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d-----g~v~iwd~~   95 (228)
                      ++..++.|+.+        ..+.+||..+.+-......+..  ...-..+.  -+++.++.|+. +     ..+.+||+.
T Consensus        98 ~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~--r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~  173 (315)
T 4asc_A           98 LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYV--VYGHTVLS--HMDLVYVIGGKGSDRKCLNKMCVYDPK  173 (315)
T ss_dssp             TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSC--CBSCEEEE--ETTEEEEECCBCTTSCBCCCEEEEETT
T ss_pred             CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCc--ccceeEEE--ECCEEEEEeCCCCCCcccceEEEEeCC
Confidence            55666666632        4588999988764333222211  11112222  35667777765 2     468999988


Q ss_pred             CCceeeEEecccccceeEEEEECCCCCEEEEeeCCC-----eEEEEEccCCeeEE
Q 040370           96 SANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDS-----TVKLWEVSSGRLVK  145 (228)
Q Consensus        96 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~-----~i~~wd~~~~~~~~  145 (228)
                      +.+-...-........-.++.+  +++.++.|+.++     .+.+||+.+.+...
T Consensus       174 ~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~  226 (315)
T 4asc_A          174 KFEWKELAPMQTARSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSITDNKWAP  226 (315)
T ss_dssp             TTEEEECCCCSSCCBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETTTTEEEE
T ss_pred             CCeEEECCCCCCchhceEEEEE--CCEEEEEeccCCCCccceEEEEECCCCeEEE
Confidence            7653322111111111122222  567777777654     58899998775443

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=97.15  E-value=0.028  Score=38.34  Aligned_cols=144  Identities=8%  Similarity=-0.047  Sum_probs=80.3

Q ss_pred             cceeeEEeCCCCCeEEEEecCCeEEEEeCCCCce------eeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEcc
Q 040370           66 GAINQVRYSSTGGMYVTASKDGAIRLWDGVSANC------VRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVS  139 (228)
Q Consensus        66 ~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~  139 (228)
                      ..+..++|+|+|.+.+.  .+|.+.-.+..+...      -..+-... -..-.++.|.|++.+.++  .||.|+-++-.
T Consensus        41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~G-w~~F~a~~fD~~G~LYav--~dG~iyr~~pP  115 (236)
T 1tl2_A           41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGG-WNQFQFLFFDPNGYLYAV--SKDKLYKASPP  115 (236)
T ss_dssp             TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSC-GGGCSEEEECTTSCEEEE--ETTEEEEESCC
T ss_pred             ccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEecccc-cccceEEEECCCCCEEEe--CCCEEEEeCCC
Confidence            36789999999886555  778877777654221      12221100 111367889999987777  56988877753


Q ss_pred             CCeeEE-----EEecceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcc------eeEEeecCCCCCcEEEEeCCC
Q 040370          140 SGRLVK-----QYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAE------KVAKWSSNHIGAPRWIEHSPA  208 (228)
Q Consensus       140 ~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~------~~~~~~~~~~~~v~~~~~~~~  208 (228)
                      +.....     ...+...-.....+.+.|++...++.   |+.++-....++.      ....+....-..-.-+.|.|+
T Consensus       116 ~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~---dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~  192 (236)
T 1tl2_A          116 QSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH---GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSV  192 (236)
T ss_dssp             CSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE---TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTT
T ss_pred             cCCCCceeccccEeccCCCCceEEEEECCCceEEEEe---CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECCC
Confidence            311110     11111112345778889999887776   3665433322111      111111122223444678898


Q ss_pred             CcEEEEecCCC
Q 040370          209 EAAFITCGTDR  219 (228)
Q Consensus       209 ~~~l~s~~~dg  219 (228)
                      +.+.+..  +|
T Consensus       193 G~l~~v~--~g  201 (236)
T 1tl2_A          193 GTLFGVQ--GG  201 (236)
T ss_dssp             SCEEEEE--TT
T ss_pred             CcEEEEe--CC
Confidence            8877666  66

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=97.11  E-value=0.064  Score=41.90  Aligned_cols=187  Identities=13%  Similarity=0.159  Sum_probs=113.7

Q ss_pred             CCCEEEEec-CCCeEEEEEcccceEEeeeccceeeeccceeeEEeC--CCCCeEEEEec-------CCeE---------E
Q 040370           30 SGDFLLAGT-DHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYS--STGGMYVTASK-------DGAI---------R   90 (228)
Q Consensus        30 ~~~~l~~~~-~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~l~~~~~-------dg~v---------~   90 (228)
                      ||++|..-. .+..|...+++..++.+....+.   ...+..+.|-  |+..+++.+++       ||..         .
T Consensus       141 DGrylfiNdkan~RvAri~l~~~~~d~Ii~iPn---~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~  217 (638)
T 3sbq_A          141 DGKYLFINDKANSRVARIRLDIMKCDKMITVPN---VQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQDENSYT  217 (638)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEEECTT---CSCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTSTTEEE
T ss_pred             eeEEEEEecCCCcceEEEECCcEeeceeEeCCC---CcCcccccccccCCccEEEecceeeccCCCCCcccccCChhhce
Confidence            677777655 56788889999988877776654   5678888886  67778887764       2321         1


Q ss_pred             E---EeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCC---------------eEEEEE---------------
Q 040370           91 L---WDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDS---------------TVKLWE---------------  137 (228)
Q Consensus        91 i---wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~---------------~i~~wd---------------  137 (228)
                      +   .|..+.+....+..   ....-.+...+++++.++.+.+.               .+.+++               
T Consensus       218 ~f~~iD~~tm~v~~Qv~v---~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~  294 (638)
T 3sbq_A          218 MYNAIDAETMEMAFQVIV---DGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFIT  294 (638)
T ss_dssp             EEEEEETTTCSEEEEEEE---SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBC
T ss_pred             EEEEEcCCccEEEEEEEc---CCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEE
Confidence            1   12222222222211   11223344566777776665321               234444               


Q ss_pred             ----------ccC----CeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcce-------------eE
Q 040370          138 ----------VSS----GRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEK-------------VA  190 (228)
Q Consensus       138 ----------~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~-------------~~  190 (228)
                                .+.    +.....+..  .+.....+..+|+|+++++++.-+.++.++|.+....             ..
T Consensus       295 ~~g~gv~ViD~~~~~~~~~~~~~~iP--~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~a  372 (638)
T 3sbq_A          295 LGDSKTPVLDGRKKDGKDSKFTRYVP--VPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVG  372 (638)
T ss_dssp             CTTCCCCEEECSCBTTBCCSSEEEEE--ESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEE
T ss_pred             ECCCCeeEEccccccccCCceEEEEe--CCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEe
Confidence                      332    111111110  2233446778999999999999999999999874221             11


Q ss_pred             EeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeee
Q 040370          191 KWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKE  226 (228)
Q Consensus       191 ~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~  226 (228)
                      ..  .-.-.....+|.++|....|---|..|.-|++
T Consensus       373 e~--e~GlGPlHt~Fd~~G~aYTtlfidSqvvkWni  406 (638)
T 3sbq_A          373 EP--ELGLGPLHTTFDGRGNAYTTLFIDSQVVKWNM  406 (638)
T ss_dssp             CC--BCCSCEEEEEECSSSEEEEEETTTTEEEEEEH
T ss_pred             ec--cCCCcccEEEECCCCceEeeeeecceEEEEec
Confidence            21  23345678899999966666678999999986

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=97.05  E-value=0.054  Score=39.94  Aligned_cols=147  Identities=14%  Similarity=0.229  Sum_probs=79.5

Q ss_pred             cceeeEEeCCCCCeEEEEecCCeEEEEeCCCCceeeEEec-----ccccceeEEEEECCC---CCEEEEee-C-------
Q 040370           66 GAINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVG-----AHGTAEATSANFTKD---QRFVLSCG-K-------  129 (228)
Q Consensus        66 ~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~-----~~~~~~i~~~~~~~~---~~~l~~~~-~-------  129 (228)
                      .....|+|.|+|+.++.+...|.|++++.. +.....+..     .........++++|+   +..|+... .       
T Consensus        18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~   96 (353)
T 2g8s_A           18 DHPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKA   96 (353)
T ss_dssp             SSEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCE
T ss_pred             CCcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCc
Confidence            346789999999834455567999999853 332111110     111345689999996   44444442 2       


Q ss_pred             CCeEEEEEccCC--e--eEEEE-ecc----eeeeeeeEEEECCCCcEEEEeeCC------------CCeEEEEEcCCcc-
Q 040370          130 DSTVKLWEVSSG--R--LVKQY-LGA----THTQLRFQAVFNDTEEFVLSIDEP------------SNEIVIWDALTAE-  187 (228)
Q Consensus       130 d~~i~~wd~~~~--~--~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~------------d~~i~i~d~~~~~-  187 (228)
                      ...|..+++...  +  ....+ ...    ........+.|.|++.+.++.+..            .|.|.-++....- 
T Consensus        97 ~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p  176 (353)
T 2g8s_A           97 GTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIP  176 (353)
T ss_dssp             EEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCC
T ss_pred             eeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCC
Confidence            235666766432  1  11111 111    011223568999999766665432            2467777754320 


Q ss_pred             -----------eeEEeecCCCCCcEEEEeCC-CCcEEEE
Q 040370          188 -----------KVAKWSSNHIGAPRWIEHSP-AEAAFIT  214 (228)
Q Consensus       188 -----------~~~~~~~~~~~~v~~~~~~~-~~~~l~s  214 (228)
                                 ....+..++ .....++|+| +++++++
T Consensus       177 ~~npf~~~~~~~~~i~a~G~-rnp~gl~~d~~~g~l~~~  214 (353)
T 2g8s_A          177 DDNPFIKESGVRAEIWSYGI-RNPQGMAMNPWSNALWLN  214 (353)
T ss_dssp             TTCTTTTSTTSCTTEEEECC-SEEEEEEEETTTTEEEEE
T ss_pred             CCCCCcCCCCCCccEEEEcC-cCccceEEECCCCCEEEE
Confidence                       111221233 3467899999 5655544

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=96.97  E-value=0.078  Score=40.58  Aligned_cols=110  Identities=10%  Similarity=0.101  Sum_probs=62.2

Q ss_pred             cCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeecccee----eeccceeeEEeCCC---CCeEEEEec-----
Q 040370           18 DTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEI----SVNGAINQVRYSST---GGMYVTASK-----   85 (228)
Q Consensus        18 ~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~----~~~~~i~~~~~~~~---~~~l~~~~~-----   85 (228)
                      .-.....|+|.|+|+++++-...+.|++++..+++..........    .-...+..|+|+|+   +..|..+..     
T Consensus        25 ~l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~  104 (454)
T 1cru_A           25 NLNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPK  104 (454)
T ss_dssp             CCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTT
T ss_pred             CCCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccC
Confidence            345678999999998777655445788887655543222111110    01356779999995   444544432     


Q ss_pred             --------CCeEEEEeCCCC-------ceee-EEecccccceeEEEEECCCCCEEEEee
Q 040370           86 --------DGAIRLWDGVSA-------NCVR-SIVGAHGTAEATSANFTKDQRFVLSCG  128 (228)
Q Consensus        86 --------dg~v~iwd~~~~-------~~~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~  128 (228)
                              ...|.-++....       +.+. .+... ..-....+.|.|||.+.++.+
T Consensus       105 ~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~-~~H~~~~l~f~pDG~Lyv~~G  162 (454)
T 1cru_A          105 STDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSS-KDHQSGRLVIGPDQKIYYTIG  162 (454)
T ss_dssp             C--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCC-SSCCEEEEEECTTSCEEEEEC
T ss_pred             CCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCC-CCCCCCeEeECCCCeEEEEEC
Confidence                    234555554322       1111 12211 112467899999998777654

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=96.94  E-value=0.061  Score=38.83  Aligned_cols=109  Identities=11%  Similarity=0.129  Sum_probs=57.2

Q ss_pred             CCCEEEEecCC-------CeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEec------CCeEEEEeCCC
Q 040370           30 SGDFLLAGTDH-------PIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASK------DGAIRLWDGVS   96 (228)
Q Consensus        30 ~~~~l~~~~~d-------~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~------dg~v~iwd~~~   96 (228)
                      ++..++.|+.+       ..+.+||..+.+-......+...  ..-..+.  .+++.++.|+.      -..+.+||+.+
T Consensus       109 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r--~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~~  184 (318)
T 2woz_A          109 DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKV--YGHNVIS--HNGMIYCLGGKTDDKKCTNRVFIYNPKK  184 (318)
T ss_dssp             TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCE--ESCEEEE--ETTEEEEECCEESSSCBCCCEEEEETTT
T ss_pred             CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcc--cccEEEE--ECCEEEEEcCCCCCCCccceEEEEcCCC
Confidence            56666666643       35778888876644332222111  1111222  35666677664      24589999987


Q ss_pred             CceeeEEecccccceeEEEEECCCCCEEEEeeCC-----CeEEEEEccCCeeE
Q 040370           97 ANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKD-----STVKLWEVSSGRLV  144 (228)
Q Consensus        97 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----~~i~~wd~~~~~~~  144 (228)
                      .+-...-..........++.+  +++.++.|+.+     ..+.+||+.+.+..
T Consensus       185 ~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~  235 (318)
T 2woz_A          185 GDWKDLAPMKTPRSMFGVAIH--KGKIVIAGGVTEDGLSASVEAFDLKTNKWE  235 (318)
T ss_dssp             TEEEEECCCSSCCBSCEEEEE--TTEEEEEEEEETTEEEEEEEEEETTTCCEE
T ss_pred             CEEEECCCCCCCcccceEEEE--CCEEEEEcCcCCCCccceEEEEECCCCeEE
Confidence            654332221111111122222  56677777643     35778998876543

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=96.94  E-value=0.08  Score=40.09  Aligned_cols=192  Identities=9%  Similarity=0.121  Sum_probs=117.4

Q ss_pred             EEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCCC-ceeeEE
Q 040370           25 VSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSA-NCVRSI  103 (228)
Q Consensus        25 ~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~-~~~~~~  103 (228)
                      .-.+|..+.+|.=. ..++.|+|+++...+.....     ...|.-=.|-.+. .|+-.+ +..|+.|++... .+.+.+
T Consensus        71 AIMnP~~~iiALra-g~~lQiFnle~K~klks~~~-----~e~VvfWkWis~~-~l~lVT-~taVyHWsi~~~s~P~kvF  142 (494)
T 1bpo_A           71 AIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-----TDDVTFWKWISLN-TVALVT-DNAVYHWSMEGESQPVKMF  142 (494)
T ss_dssp             EEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEEC-----SSCCCEEEEEETT-EEEEEC-SSEEEEEESSSSCCCEEEE
T ss_pred             eeeCCCCcEEEEec-CCeEEEEchHHhhhhcceec-----CCCceEEEecCCC-eEEEEc-CCeeEEecccCCCCchhhe
Confidence            44577777777554 57999999999887777665     3456666776443 344443 568999999754 344455


Q ss_pred             eccc--ccceeEEEEECCCCCEEEEee-------CCCeEEEEEccCCeeEEEEecceeeeeeeEEEEC--CCCcEEEEee
Q 040370          104 VGAH--GTAEATSANFTKDQRFVLSCG-------KDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFN--DTEEFVLSID  172 (228)
Q Consensus       104 ~~~~--~~~~i~~~~~~~~~~~l~~~~-------~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~  172 (228)
                      ..+.  ....|..-..+++.++++..+       -.|.+.+|..+. +..+.+++|  ...-..+...  +....+++-+
T Consensus       143 dR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er-~~sQ~ieGh--aa~F~~~~~~g~~~~~~lf~fa  219 (494)
T 1bpo_A          143 DRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR-KVSQPIEGH--AASFAQFKMEGNAEESTLFCFA  219 (494)
T ss_dssp             ECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTT-CCEEEECCS--EEEEEEEECTTCSSEEEEEEEE
T ss_pred             ecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccc-cccchheee--eeeeEEEecCCCCCCceEEEEE
Confidence            4432  145677777888999877544       236788898865 445555553  2222222222  1222344333


Q ss_pred             CC---CCeEEEEEcCCc---ce-----eEEee---cCCCCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370          173 EP---SNEIVIWDALTA---EK-----VAKWS---SNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEI  227 (228)
Q Consensus       173 ~~---d~~i~i~d~~~~---~~-----~~~~~---~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~  227 (228)
                      ..   .+.+++.++...   .+     ...+.   .....-..++..++....+..-..-|.+.+||+.
T Consensus       220 ~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDle  288 (494)
T 1bpo_A          220 VRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLE  288 (494)
T ss_dssp             ECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETT
T ss_pred             EecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecc
Confidence            22   278888888433   11     11111   1223445678888877788888889999999964

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=96.88  E-value=0.13  Score=41.69  Aligned_cols=156  Identities=10%  Similarity=0.054  Sum_probs=82.4

Q ss_pred             CCCCEEEEecCC----CeEEEEEcccceEEeee-c-----cceeeeccceeeEEeCCCCCeEEEEecC------CeEEEE
Q 040370           29 PSGDFLLAGTDH----PIAHLYDVNTFQCYLSA-N-----VPEISVNGAINQVRYSSTGGMYVTASKD------GAIRLW   92 (228)
Q Consensus        29 ~~~~~l~~~~~d----~~i~vw~~~~~~~~~~~-~-----~~~~~~~~~i~~~~~~~~~~~l~~~~~d------g~v~iw   92 (228)
                      .++..++.|+.+    ..+.+||..+++-.... .     .+..  ...-..+.+..+++.++.|+.+      ..+.+|
T Consensus       396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~--R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~y  473 (695)
T 2zwa_A          396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVA--RMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIF  473 (695)
T ss_dssp             CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCC--CBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEE
T ss_pred             ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCcc--ccceEEEEEccCCEEEEEcCCCCCCCccccEEEE
Confidence            456677777643    46888998877543322 1     1110  1112223332267777777754      358889


Q ss_pred             eCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCC--eEEEEEccCCeeEEEEe---cceeeeeeeEEEECCC-Cc
Q 040370           93 DGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDS--TVKLWEVSSGRLVKQYL---GATHTQLRFQAVFNDT-EE  166 (228)
Q Consensus        93 d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~--~i~~wd~~~~~~~~~~~---~~~~~~~~~~~~~~~~-~~  166 (228)
                      |+.+.+-...-.... ...-.+++...+++.++.|+.++  .+.+||+.+.+....-.   ..........+.+... +.
T Consensus       474 d~~t~~W~~~~~~p~-~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~  552 (695)
T 2zwa_A          474 DMKTREWSMIKSLSH-TRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQ  552 (695)
T ss_dssp             ETTTTEEEECCCCSB-CCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTE
T ss_pred             eCCCCcEEECCCCCC-CcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCE
Confidence            988764332211111 11122333334778888887655  69999998876543221   1111112223444544 44


Q ss_pred             EEEEeeCC-C-----CeEEEEEcCCcc
Q 040370          167 FVLSIDEP-S-----NEIVIWDALTAE  187 (228)
Q Consensus       167 ~~~~~~~~-d-----~~i~i~d~~~~~  187 (228)
                      .++.+|.. +     ..+.+||+.+..
T Consensus       553 iyv~GG~~~~~~~~~~~v~~yd~~~~~  579 (695)
T 2zwa_A          553 GIILGGGFMDQTTVSDKAIIFKYDAEN  579 (695)
T ss_dssp             EEEECCBCTTSSCBCCEEEEEEECTTC
T ss_pred             EEEECCcCCCCCeeeCcEEEEEccCCc
Confidence            44444431 1     468899988776

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=96.83  E-value=0.087  Score=38.83  Aligned_cols=120  Identities=10%  Similarity=0.044  Sum_probs=64.9

Q ss_pred             CcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeec-cc--eeeeccceeeEEeCCC---CCeEEEEe-c------
Q 040370           19 THNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSAN-VP--EISVNGAINQVRYSST---GGMYVTAS-K------   85 (228)
Q Consensus        19 ~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~-~~--~~~~~~~i~~~~~~~~---~~~l~~~~-~------   85 (228)
                      -.....|+|.|+++.|+++...|.|++++.. +.....+. ..  ..........++++|+   +..|..+. .      
T Consensus        17 l~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~   95 (353)
T 2g8s_A           17 LDHPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGK   95 (353)
T ss_dssp             ESSEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSC
T ss_pred             CCCcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCC
Confidence            4567899999999834455567999998853 33211111 10  0010345688999995   44444442 2      


Q ss_pred             -CCeEEEEeCCCC--c--eeeEE-eccc----ccceeEEEEECCCCCEEEEeeC-------------CCeEEEEEcc
Q 040370           86 -DGAIRLWDGVSA--N--CVRSI-VGAH----GTAEATSANFTKDQRFVLSCGK-------------DSTVKLWEVS  139 (228)
Q Consensus        86 -dg~v~iwd~~~~--~--~~~~~-~~~~----~~~~i~~~~~~~~~~~l~~~~~-------------d~~i~~wd~~  139 (228)
                       ...|..+++...  .  ....+ ....    .......+.|.|++.+.++.+.             .|.|.-+|..
T Consensus        96 ~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~d  172 (353)
T 2g8s_A           96 AGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQ  172 (353)
T ss_dssp             EEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETT
T ss_pred             ceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCC
Confidence             235666665432  1  11111 1100    0112356999999976665433             2456666764

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=96.81  E-value=0.0037  Score=45.70  Aligned_cols=115  Identities=10%  Similarity=0.024  Sum_probs=72.2

Q ss_pred             CEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEe--CCCCCeEEEE--ecCCeEEEEeCCCCceeeEEeccc
Q 040370           32 DFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRY--SSTGGMYVTA--SKDGAIRLWDGVSANCVRSIVGAH  107 (228)
Q Consensus        32 ~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~~~l~~~--~~dg~v~iwd~~~~~~~~~~~~~~  107 (228)
                      ..++.++.||.|.-.|.++|+.........   ..++....-  .+.+..++.+  ..||.|..++..+|.....+....
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~---~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~   87 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHIIWSIEPEN---FQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQ   87 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEEEEEECGGG---SCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHH
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEecCCc---cCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccc
Confidence            468889999999999999999888776530   112211110  0112234433  589999999998886554443321


Q ss_pred             --ccceeEE---EEE-C----CCCCEEEEeeCCCeEEEEEccCCeeEEEEec
Q 040370          108 --GTAEATS---ANF-T----KDQRFVLSCGKDSTVKLWEVSSGRLVKQYLG  149 (228)
Q Consensus       108 --~~~~i~~---~~~-~----~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~  149 (228)
                        ...++..   ... .    ..+..+++|+.++.+...|+++|+.+..+..
T Consensus        88 lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~  139 (339)
T 2be1_A           88 LVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGP  139 (339)
T ss_dssp             HHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEEST
T ss_pred             ceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEec
Confidence              0111111   000 0    1456789999999999999999998887753

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=96.74  E-value=0.099  Score=38.34  Aligned_cols=104  Identities=13%  Similarity=0.045  Sum_probs=55.5

Q ss_pred             CCCEEEEecC-C---------CeEEEEEcccceEEeeeccc-eeeeccceeeEEeCCCCCeEEEEecC------------
Q 040370           30 SGDFLLAGTD-H---------PIAHLYDVNTFQCYLSANVP-EISVNGAINQVRYSSTGGMYVTASKD------------   86 (228)
Q Consensus        30 ~~~~l~~~~~-d---------~~i~vw~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~d------------   86 (228)
                      +++.++.|+. +         ..+.+||..+.+-....... ..  .....++.  .++++++.|+.+            
T Consensus        65 ~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~p~~--r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~  140 (357)
T 2uvk_A           65 DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMG--MAGHVTFV--HNGKAYVTGGVNQNIFNGYFEDLN  140 (357)
T ss_dssp             TTEEEEECCEEECTTSCEEECCCEEEEETTTTEEEECSCCCSSC--CSSEEEEE--ETTEEEEEECCCHHHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCCCccceeeccEEEEeCCCCcEEECCCCCCcc--cccceEEE--ECCEEEEEeCcCCCcCcccccchh
Confidence            5666677765 2         46889998887643332222 11  11122222  467777888754            


Q ss_pred             ---------------------------CeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeC------CCeE
Q 040370           87 ---------------------------GAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGK------DSTV  133 (228)
Q Consensus        87 ---------------------------g~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~------d~~i  133 (228)
                                                 ..+.+||+.+.+-...-........-.+++.. +++.++.|+.      ...+
T Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~v  219 (357)
T 2uvk_A          141 EAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDPSTQQWSYAGESPWYGTAGAAVVNK-GDKTWLINGEAKPGLRTDAV  219 (357)
T ss_dssp             HHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEETTTTEEEEEEECSSCCCBSCEEEEE-TTEEEEECCEEETTEECCCE
T ss_pred             hcCCcccchhhhhhhhccccccccCCcccEEEEeCCCCcEEECCCCCCCCcccccEEEE-CCEEEEEeeecCCCcccCce
Confidence                                       57899999876544332221101110222222 4666666653      2457


Q ss_pred             EEEEc
Q 040370          134 KLWEV  138 (228)
Q Consensus       134 ~~wd~  138 (228)
                      ..||+
T Consensus       220 ~~~d~  224 (357)
T 2uvk_A          220 FELDF  224 (357)
T ss_dssp             EEEEC
T ss_pred             EEEEe
Confidence            77887

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=96.58  E-value=0.045  Score=40.22  Aligned_cols=148  Identities=9%  Similarity=-0.000  Sum_probs=64.1

Q ss_pred             CeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEec------CCeEEEEeC--CCCceeeEEeccccccee
Q 040370           41 PIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASK------DGAIRLWDG--VSANCVRSIVGAHGTAEA  112 (228)
Q Consensus        41 ~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~------dg~v~iwd~--~~~~~~~~~~~~~~~~~i  112 (228)
                      ..+.+||..+.+-......+... ... .+++.. ++++++.|+.      ...+..+|+  .+.+-...-.........
T Consensus       168 ~~v~~yd~~~~~W~~~~~~p~~~-~~~-~~~~~~-~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~  244 (357)
T 2uvk_A          168 KFLLSFDPSTQQWSYAGESPWYG-TAG-AAVVNK-GDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVA  244 (357)
T ss_dssp             CEEEEEETTTTEEEEEEECSSCC-CBS-CEEEEE-TTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCB
T ss_pred             ccEEEEeCCCCcEEECCCCCCCC-ccc-ccEEEE-CCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccc
Confidence            57889999887643332222111 111 222222 5566666653      345777876  433322111111001111


Q ss_pred             EEEEECCCCCEEEEeeCC----------------------CeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEE
Q 040370          113 TSANFTKDQRFVLSCGKD----------------------STVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLS  170 (228)
Q Consensus       113 ~~~~~~~~~~~l~~~~~d----------------------~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (228)
                      ...+...+++.++.|+.+                      ..+.+||+.+.+....-........ ..+ ...++..++.
T Consensus       245 ~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~-~~~-~~~~~~i~v~  322 (357)
T 2uvk_A          245 GGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAY-GVS-LPWNNSLLII  322 (357)
T ss_dssp             SCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCBS-SEE-EEETTEEEEE
T ss_pred             cceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCccc-cee-EEeCCEEEEE
Confidence            111112256677777632                      2578899887654332211111111 111 2234555555


Q ss_pred             eeCCC-----CeEEEEEcCCcceeEEee
Q 040370          171 IDEPS-----NEIVIWDALTAEKVAKWS  193 (228)
Q Consensus       171 ~~~~d-----~~i~i~d~~~~~~~~~~~  193 (228)
                      +|...     ..+.++++++++.....+
T Consensus       323 GG~~~~~~~~~~v~~l~~~~~~~~~~~~  350 (357)
T 2uvk_A          323 GGETAGGKAVTDSVLITVKDNKVTVQNL  350 (357)
T ss_dssp             EEECGGGCEEEEEEEEEC-CCSCEEEC-
T ss_pred             eeeCCCCCEeeeEEEEEEcCcEeEeeec
Confidence            55421     246666888777665543

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=96.47  E-value=0.14  Score=36.80  Aligned_cols=161  Identities=4%  Similarity=-0.027  Sum_probs=85.6

Q ss_pred             CCCCEEEEec--CCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecC--------------CeEEEE
Q 040370           29 PSGDFLLAGT--DHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKD--------------GAIRLW   92 (228)
Q Consensus        29 ~~~~~l~~~~--~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d--------------g~v~iw   92 (228)
                      +++..++...  .++.|...+.+.....+ +.      ...  +--++++++.|+-+...              ..|+..
T Consensus        23 ~~g~~iy~~n~~d~~~ly~~~~dg~~~~~-l~------~~~--~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i   93 (302)
T 3s25_A           23 ESDGEVFFSNTNDNGRLYAMNIDGSNIHK-LS------NDT--AMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRI   93 (302)
T ss_dssp             EETTEEEEEEGGGTTEEEEEETTSCSCEE-EE------EEE--EEEEEECSSEEEEEEECC------CCSSCCSEEEEEE
T ss_pred             EeCCEEEEEeCCCCceEEEEcCCCCCCEE-cc------CCc--eeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEE
Confidence            4566665442  34555555544333211 11      111  23457788887766543              367777


Q ss_pred             eCCCCceeeEEecccccceeEEEEECCCCCEEEEee----CCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEE
Q 040370           93 DGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCG----KDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFV  168 (228)
Q Consensus        93 d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~----~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (228)
                      ++..++... +...    .  +..+++++++|+-..    ....|+..++.. .....+...  ..    ..+++.++.+
T Consensus        94 ~~dg~~~~~-l~~~----~--~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dG-s~~~~lt~~--~~----~~~~~~g~~i  159 (302)
T 3s25_A           94 KRNGHGSTV-LDPD----P--CIYASLIGNYIYYLHYDTQTATSLYRIRIDG-EEKKKIKNH--YL----FTCNTSDRYF  159 (302)
T ss_dssp             ETTSCCCEE-EECS----C--EEEEEEETTEEEEEEESSSSCEEEEEEETTS-CCCEEEESS--CC----CCSEEETTEE
T ss_pred             eCCCCcceE-eecC----C--ccEEEEeCCEEEEEeecCCCCceEEEEECCC-CCeEEEeCC--Cc----eEeeEECCEE
Confidence            776655332 3221    1  225677788887665    344566666653 333444332  11    2346678888


Q ss_pred             EEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecC
Q 040370          169 LSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGT  217 (228)
Q Consensus       169 ~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~  217 (228)
                      +-+......|...++..+.....+ .+   ... ..++|++.+|+-...
T Consensus       160 y~t~~g~~~Iy~~~l~g~~~~~l~-~~---~~~-~~~~P~g~~iy~t~~  203 (302)
T 3s25_A          160 YYNNPKNGQLYRYDTASQSEALFY-DC---NCY-KPVVLDDTNVYYMDV  203 (302)
T ss_dssp             EEECTTTCCEEEEETTTTEEEEEE-CS---CEE-EEEEEETTEEEEEEG
T ss_pred             EEEeCCCceEEEEECCCCCEEEEe-CC---Ccc-ceeeecCCEEEEEEc
Confidence            776654678888887665543322 22   222 235577776665443

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=96.44  E-value=0.15  Score=36.70  Aligned_cols=141  Identities=9%  Similarity=0.003  Sum_probs=80.0

Q ss_pred             EEEeCCCCEEEEecCC--------------CeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEe--c--C
Q 040370           25 VSFHPSGDFLLAGTDH--------------PIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTAS--K--D   86 (228)
Q Consensus        25 ~~~~~~~~~l~~~~~d--------------~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~--d   86 (228)
                      --+++++++|+-....              ..|+..+++..+.....       ...  ...|+++++.|+-..  .  +
T Consensus        58 ~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~l~-------~~~--~~~~s~~g~~Iy~~~~~~~~~  128 (302)
T 3s25_A           58 MYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTVLD-------PDP--CIYASLIGNYIYYLHYDTQTA  128 (302)
T ss_dssp             EEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEEEE-------CSC--EEEEEEETTEEEEEEESSSSC
T ss_pred             eeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceEee-------cCC--ccEEEEeCCEEEEEeecCCCC
Confidence            3457888888765432              35677777665432221       111  236777888887665  3  3


Q ss_pred             CeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeC-CCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCC
Q 040370           87 GAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGK-DSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTE  165 (228)
Q Consensus        87 g~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (228)
                      ..|..-++.. .....+..+  ..    ..++++++.|+-.+. ...|.+.++..+.....+.+   ..  .. .+.|++
T Consensus       129 ~~Iy~~~~dG-s~~~~lt~~--~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~~---~~--~~-~~~P~g  195 (302)
T 3s25_A          129 TSLYRIRIDG-EEKKKIKNH--YL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYDC---NC--YK-PVVLDD  195 (302)
T ss_dssp             EEEEEEETTS-CCCEEEESS--CC----CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEECS---CE--EE-EEEEET
T ss_pred             ceEEEEECCC-CCeEEEeCC--Cc----eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEeCC---Cc--cc-eeeecC
Confidence            4555556653 334444433  11    346777877775554 67888888876654433332   11  11 244888


Q ss_pred             cEEEEeeCCC-CeEEEEEcCCcc
Q 040370          166 EFVLSIDEPS-NEIVIWDALTAE  187 (228)
Q Consensus       166 ~~~~~~~~~d-~~i~i~d~~~~~  187 (228)
                      .+++-+...+ ..|..-++....
T Consensus       196 ~~iy~t~~~~~~~I~~~~ldG~~  218 (302)
T 3s25_A          196 TNVYYMDVNRDNAIVHVNINNPN  218 (302)
T ss_dssp             TEEEEEEGGGTTEEEEECSSSCC
T ss_pred             CEEEEEEcCCCcEEEEEECCCCC
Confidence            8887765432 356666665444

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=96.10  E-value=0.07  Score=39.05  Aligned_cols=115  Identities=10%  Similarity=0.045  Sum_probs=70.6

Q ss_pred             CeEEEEecCCeEEEEeCCCCceeeEEecccccceeEEEEEC--C-CCCEEEEe-eCCCeEEEEEccCCeeEEEEecceee
Q 040370           78 GMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFT--K-DQRFVLSC-GKDSTVKLWEVSSGRLVKQYLGATHT  153 (228)
Q Consensus        78 ~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~--~-~~~~l~~~-~~d~~i~~wd~~~~~~~~~~~~~~~~  153 (228)
                      ..++.++.||.|.-.|..+|+..-.+.... ..++....-.  + ++..++.. ..||.+..+|..+|.....+......
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~-~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv   89 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHIIWSIEPEN-FQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLV   89 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEEEEEECGGG-SCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHH
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEecCCc-cCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccce
Confidence            468899999999999999999888876631 1222221100  1 22333333 68999999999888655444321110


Q ss_pred             eeeeEEEEC-----------CCCcEEEEeeCCCCeEEEEEcCCcceeEEeecC
Q 040370          154 QLRFQAVFN-----------DTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSN  195 (228)
Q Consensus       154 ~~~~~~~~~-----------~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~  195 (228)
                      . ...+...           ..+..+++++. ++.+...|+++|+.+..+..+
T Consensus        90 ~-~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~-~g~l~ald~~tG~~~W~~~~~  140 (339)
T 2be1_A           90 S-TSPLHLKTNIVVNDSGKIVEDEKVYTGSM-RTIMYTINMLNGEIISAFGPG  140 (339)
T ss_dssp             T-TCSEEEECC----------CCEEEEECEE-EEEEEEEETTTCCEEEEESTT
T ss_pred             e-ccccccCCCceeecccccccCCEEEEEec-CCEEEEEECCCCcEEEEEecC
Confidence            0 0001110           13445555444 799999999999999888433

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=95.91  E-value=0.54  Score=41.32  Aligned_cols=193  Identities=10%  Similarity=0.122  Sum_probs=107.6

Q ss_pred             EEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCCC-ceeeEEe
Q 040370           26 SFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSA-NCVRSIV  104 (228)
Q Consensus        26 ~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~-~~~~~~~  104 (228)
                      -.+|..+.+|.=. ..++.|+|+++...+.....     ..+|.-=.|-.... |+-.+ +..|..|++... .+.+.+.
T Consensus        72 IMnP~~~iiALra-g~~lQiFnl~~k~klks~~~-----~e~VvfWkWis~~~-l~lVT-~~aVyHW~~~~~s~P~k~fd  143 (1630)
T 1xi4_A           72 IMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-----TDDVTFWKWISLNT-VALVT-DNAVYHWSMEGESQPVKMFD  143 (1630)
T ss_pred             ccCCCcceEEEec-CCeEEEeehHHhhhhccccc-----CCCceEEEecCCCe-eEEEc-CCeEEEeccCCCCccHHHHh
Confidence            3467666666544 57899999998776666554     34566667764443 33332 467999999743 2333332


Q ss_pred             ccc--ccceeEEEEECCCCCEEEEee-------CCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeC--
Q 040370          105 GAH--GTAEATSANFTKDQRFVLSCG-------KDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDE--  173 (228)
Q Consensus       105 ~~~--~~~~i~~~~~~~~~~~l~~~~-------~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  173 (228)
                      .+.  ....|..-..+++.++++..|       -.|.+.+|..+.+ ..+.+.+|...-....+.-.+....+++.+.  
T Consensus       144 R~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~-~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~  222 (1630)
T 1xi4_A          144 RHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRG  222 (1630)
T ss_pred             cchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccc-cchhhhHhHhhhheeccCCCCCCceEEEEEEec
Confidence            221  134566677788888877444       3477888887643 3333444221111111111122222333222  


Q ss_pred             -CCCeEEEEEcCCc---ceeEE-----ee---cCCCCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370          174 -PSNEIVIWDALTA---EKVAK-----WS---SNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEI  227 (228)
Q Consensus       174 -~d~~i~i~d~~~~---~~~~~-----~~---~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~  227 (228)
                       ..+.++|-++...   .+...     +.   .....-..++..++....+..-+.-|.+.++|+.
T Consensus       223 ~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~  288 (1630)
T 1xi4_A          223 QAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLE  288 (1630)
T ss_pred             CCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecc
Confidence             1267888887432   11110     00   1123335567778877777788888999999864

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=95.76  E-value=0.38  Score=35.34  Aligned_cols=110  Identities=17%  Similarity=0.149  Sum_probs=64.6

Q ss_pred             ecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeecc---ceeeeccceeeEEeCCC---CCeEEEE---ecCC
Q 040370           17 QDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANV---PEISVNGAINQVRYSST---GGMYVTA---SKDG   87 (228)
Q Consensus        17 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~---~~~~~~~~i~~~~~~~~---~~~l~~~---~~dg   87 (228)
                      ..-.....|+|.|+|.++++--..|.|++++...++.......   .... ......|+++|+   +..|...   ..++
T Consensus        29 ~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g-~~GllGia~~Pdf~~~g~lYv~yt~~~~~  107 (347)
T 3das_A           29 TGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSG-EGGLLGIALSPDYASDHMVYAYFTSASDN  107 (347)
T ss_dssp             CCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBT-TBSEEEEEECTTHHHHCEEEEEEECSSSE
T ss_pred             cCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecC-CCCceeeEeccccccCCEEEEEEecCCCC
Confidence            4456788999999998777766589999988665543221111   1111 456789999995   3444433   2345


Q ss_pred             eEEEEeCCCC----------cee-eEEecccccceeEEEEECCCCCEEEEee
Q 040370           88 AIRLWDGVSA----------NCV-RSIVGAHGTAEATSANFTKDQRFVLSCG  128 (228)
Q Consensus        88 ~v~iwd~~~~----------~~~-~~~~~~~~~~~i~~~~~~~~~~~l~~~~  128 (228)
                      .|.-|....+          +.+ ..+... ..-....+.|.||+.+.++.+
T Consensus       108 ~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~-~~H~g~~l~fgpDG~Lyvt~G  158 (347)
T 3das_A          108 RIVRMLYDEKKPSGEQLGAPDTVFRGIPKG-VIHNGGRIAFGPDKMLYAGTG  158 (347)
T ss_dssp             EEEEEEBCTTSCTTCCBCCCEEEEEEECCC-SSCCCCCEEECTTSCEEEECB
T ss_pred             EEEEEEeCCCCcccccCCCcEEEEEcCCCC-CCccCccccCCCCCCEEEEEC
Confidence            5666655431          111 112111 011235699999998777654

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=95.62  E-value=0.52  Score=35.87  Aligned_cols=203  Identities=11%  Similarity=0.039  Sum_probs=108.5

Q ss_pred             eEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccc-eEEeeeccceeeeccceeeEEeCCCCCeEEEEe------
Q 040370           12 AFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTF-QCYLSANVPEISVNGAINQVRYSSTGGMYVTAS------   84 (228)
Q Consensus        12 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~------   84 (228)
                      .++.....++|.-=.|-. .+.|+-.+ +..|+-|+++.. .+.+.+..+..-....|..-..+++.++++..+      
T Consensus        98 klks~~~~e~VvfWkWis-~~~l~lVT-~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~  175 (494)
T 1bpo_A           98 KMKAHTMTDDVTFWKWIS-LNTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQN  175 (494)
T ss_dssp             EEEEEECSSCCCEEEEEE-TTEEEEEC-SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETT
T ss_pred             hhcceecCCCceEEEecC-CCeEEEEc-CCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCC
Confidence            333333445666556643 33455444 357999999752 233332221111144566777788888766443      


Q ss_pred             -cCCeEEEEeCCCCceeeEEecccccceeEEEEECCC---CCEEEEeeC---CCeEEEEEccCC---ee-----EEEE--
Q 040370           85 -KDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKD---QRFVLSCGK---DSTVKLWEVSSG---RL-----VKQY--  147 (228)
Q Consensus        85 -~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~l~~~~~---d~~i~~wd~~~~---~~-----~~~~--  147 (228)
                       -.|.+.+|..+.+ ..+.+.+|  ...-..+.+..+   .+.++.+..   .+.+++.++...   ..     ...+  
T Consensus       176 ~v~G~mQLYS~er~-~sQ~ieGh--aa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~f  252 (494)
T 1bpo_A          176 RVVGAMQLYSVDRK-VSQPIEGH--AASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFF  252 (494)
T ss_dssp             EEEEEEEEEESTTC-CEEEECCS--EEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCC
T ss_pred             cccceEEEeecccc-ccchheee--eeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeC
Confidence             2478899997643 34455554  222222222211   123333333   378999998543   11     1111  


Q ss_pred             ecceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCE
Q 040370          148 LGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSV  221 (228)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i  221 (228)
                      ...........+..++....++.... -|.+++||+.++..+..- .-....|..-+-+....-++.....|.|
T Consensus       253 ppe~~~DFPvamqvs~kygviyviTK-~G~i~lyDleTgt~i~~n-rIs~~~iF~t~~~~~~~Gi~~Vnr~GqV  324 (494)
T 1bpo_A          253 PPEAQNDFPVAMQISEKHDVVFLITK-YGYIHLYDLETGTCIYMN-RISGETIFVTAPHEATAGIIGVNRKGQV  324 (494)
T ss_dssp             CTTSTTCCEEEEEEETTTTEEEEEET-TSEEEEEETTTCCEEEEE-ECCSSCEEEEEEETTTTEEEEEETTCEE
T ss_pred             CcccccCceeEEEecccCCEEEEEec-CceEEEEecccceeeeee-cccCCceEEecccCCCCcEEEEccCceE
Confidence            11112344556677777777766666 499999999999998876 3334445444444433334444455554

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=95.31  E-value=0.8  Score=36.05  Aligned_cols=189  Identities=11%  Similarity=0.135  Sum_probs=107.5

Q ss_pred             EEEecCCCeEEEEEcccceEEeeeccceee---------------------eccceee--EEeCC---CCCeEEEEe-cC
Q 040370           34 LLAGTDHPIAHLYDVNTFQCYLSANVPEIS---------------------VNGAINQ--VRYSS---TGGMYVTAS-KD   86 (228)
Q Consensus        34 l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~---------------------~~~~i~~--~~~~~---~~~~l~~~~-~d   86 (228)
                      |.+|+..|.|+|+-+.+++.+..+......                     ..+....  +.+..   ||++++.-. .+
T Consensus        73 f~SgG~sG~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~~gD~HHp~~S~tdg~yDGrylfiNdkan  152 (638)
T 3sbq_A           73 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNGDCHHPHISMTDGKYDGKYLFINDKAN  152 (638)
T ss_dssp             EEECGGGCCEEEEEETTTEEEEEECSSSCCTTTCTTTBHHHHHHHGGGGGCCCCCCCCCEEEEETTEEEEEEEEEEETTT
T ss_pred             EeecCcCceEEEEecCCcceEEEeecccCCCCcccCCchhHHHHHhcCCCccCCCcCCCcccccCCeeeeEEEEEecCCC
Confidence            668999999999999999877765433210                     0111111  22221   456777665 45


Q ss_pred             CeEEEEeCCCCceeeEEecccccceeEEEEEC--CCCCEEEEeeC-------CCeE------------EEEEccCCeeEE
Q 040370           87 GAIRLWDGVSANCVRSIVGAHGTAEATSANFT--KDQRFVLSCGK-------DSTV------------KLWEVSSGRLVK  145 (228)
Q Consensus        87 g~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~l~~~~~-------d~~i------------~~wd~~~~~~~~  145 (228)
                      ..|-.-+++..+.-+.+.... ...+..+.|-  |+..|++.+++       ||..            ...|..+.+...
T Consensus       153 ~RvAri~l~~~~~d~Ii~iPn-~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f~~iD~~tm~v~~  231 (638)
T 3sbq_A          153 SRVARIRLDIMKCDKMITVPN-VQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQDENSYTMYNAIDAETMEMAF  231 (638)
T ss_dssp             TEEEEEETTTTEEEEEEECTT-CSCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTSTTEEEEEEEEETTTCSEEE
T ss_pred             cceEEEECCcEeeceeEeCCC-CcCcccccccccCCccEEEecceeeccCCCCCcccccCChhhceEEEEEcCCccEEEE
Confidence            667778888887776666544 5677888886  67788888774       2221            011222222221


Q ss_pred             EEecceeeeeeeEEEECCCCcEEEEeeCC--------------------------------------CC-eEEEEEcCC-
Q 040370          146 QYLGATHTQLRFQAVFNDTEEFVLSIDEP--------------------------------------SN-EIVIWDALT-  185 (228)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------------d~-~i~i~d~~~-  185 (228)
                      ++..   ......+...+++.+.++++.+                                      ++ .+.+.|.+. 
T Consensus       232 Qv~v---~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~gv~ViD~~~~  308 (638)
T 3sbq_A          232 QVIV---DGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDSKTPVLDGRKK  308 (638)
T ss_dssp             EEEE---SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSCB
T ss_pred             EEEc---CCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCCCeeEEccccc
Confidence            1111   1111223445667777776543                                      11 344555444 


Q ss_pred             ---cceeEEeecCCCCCcEEEEeCCCCcEEEEec-CCCCEEEeeec
Q 040370          186 ---AEKVAKWSSNHIGAPRWIEHSPAEAAFITCG-TDRSVRFWKEI  227 (228)
Q Consensus       186 ---~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~-~dg~i~vwd~~  227 (228)
                         +.....+ ..-......+..+|||++++.++ .+.++.++|..
T Consensus       309 ~~~~~~~~~~-iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~  353 (638)
T 3sbq_A          309 DGKDSKFTRY-VPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAID  353 (638)
T ss_dssp             TTBCCSSEEE-EEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGG
T ss_pred             cccCCceEEE-EeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEee
Confidence               2222111 12233456688999999988776 57889888853

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=95.21  E-value=0.77  Score=35.26  Aligned_cols=111  Identities=11%  Similarity=0.083  Sum_probs=60.3

Q ss_pred             CcceEEEEEeCCCC-EEEEecCCCeEEEEEcccce---EEeeecccee-----eeccceeeEEeCCC----CCeEEEEec
Q 040370           19 THNVRSVSFHPSGD-FLLAGTDHPIAHLYDVNTFQ---CYLSANVPEI-----SVNGAINQVRYSST----GGMYVTASK   85 (228)
Q Consensus        19 ~~~v~~~~~~~~~~-~l~~~~~d~~i~vw~~~~~~---~~~~~~~~~~-----~~~~~i~~~~~~~~----~~~l~~~~~   85 (228)
                      -.....|+|.|++. .|+++...|.|++++.....   .+..+.....     ........|+|+|+    +.+.++-+.
T Consensus        13 L~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~   92 (463)
T 2wg3_C           13 LRQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTT   92 (463)
T ss_dssp             ESSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEE
T ss_pred             CCCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeC
Confidence            35668999999996 56666778999999754321   1111111000     00346788999996    443333332


Q ss_pred             --C----------CeEEEEeCCC----------CceeeEEecccccceeEEEEECCCCCEEEEeeC
Q 040370           86 --D----------GAIRLWDGVS----------ANCVRSIVGAHGTAEATSANFTKDQRFVLSCGK  129 (228)
Q Consensus        86 --d----------g~v~iwd~~~----------~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  129 (228)
                        +          ..|.-|.+..          .+.+..+......-....|.|.||+.+.++.+.
T Consensus        93 ~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd  158 (463)
T 2wg3_C           93 NQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGD  158 (463)
T ss_dssp             CCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECC
T ss_pred             CCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCC
Confidence              1          1344455432          122233321111123578999999987776554

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=94.86  E-value=1.3  Score=36.19  Aligned_cols=192  Identities=12%  Similarity=0.010  Sum_probs=97.8

Q ss_pred             cceEEEEEeCCCCEEEEecCCCeEEEEEcccc-----eEEe---eeccceeeeccceeeEEeCCCCCeEEEEecCCeEEE
Q 040370           20 HNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTF-----QCYL---SANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRL   91 (228)
Q Consensus        20 ~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~-----~~~~---~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i   91 (228)
                      ..|.++.-.+++. |..|+..+-+.+++.++.     ....   .......-....|.++...++|++.+.++..+-+..
T Consensus       419 ~~v~~i~~d~~g~-lWigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~~~t~~Gl~~  497 (758)
T 3ott_A          419 NWTYYIFEDTAGQ-LWISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGLSGMFINQIIPDNEGNVWVLLYNNKGIDK  497 (758)
T ss_dssp             SSEEEEEECTTSE-EEEEESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTCSCSCEEEEEECTTSCEEEEETTCSSEEE
T ss_pred             ceEEEEEEcCCCC-EEEEECCCceEEEccccccccCCcceecccccccccccccceeeeEEEcCCCCEEEEccCCCCcEE
Confidence            3577777766654 555665555778886531     1111   111110001345888988888886653444455888


Q ss_pred             EeCCCCceeeEEec-ccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEe-cceeeeeeeEEEECCCCcEEE
Q 040370           92 WDGVSANCVRSIVG-AHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYL-GATHTQLRFQAVFNDTEEFVL  169 (228)
Q Consensus        92 wd~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  169 (228)
                      +|..+++....... ......+.++....+|...+ |+.+ -+..+|..+.+... +. ..-....+..+.. .++...+
T Consensus       498 ~d~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~lWi-gt~~-Gl~~~~~~~~~~~~-~~~~gl~~~~i~~i~~-~~g~lWi  573 (758)
T 3ott_A          498 INPRTREVTKLFADELTGEKSPNYLLCDEDGLLWV-GFHG-GVMRINPKDESQQS-ISFGSFSNNEILSMTC-VKNSIWV  573 (758)
T ss_dssp             EETTTTEEEEECTTTSCGGGCEEEEEECTTSCEEE-EETT-EEEEECC--CCCCB-CCCCC---CCEEEEEE-ETTEEEE
T ss_pred             EeCCCCceEEecCCCcCCCcccceEEECCCCCEEE-EecC-ceEEEecCCCceEE-ecccCCCccceEEEEE-CCCCEEE
Confidence            89876654332111 11134677888777777554 4444 48888876554321 11 0111233445544 3555444


Q ss_pred             EeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeC-CCCcEEEEecCCCCEE
Q 040370          170 SIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHS-PAEAAFITCGTDRSVR  222 (228)
Q Consensus       170 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~s~~~dg~i~  222 (228)
                      ++ .  ..+..+|..+.+...--  .....+....+. ++|. |..|+.+|.+.
T Consensus       574 ~t-~--~Gl~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~G~-l~fG~~~Gl~~  621 (758)
T 3ott_A          574 ST-T--NGLWIIDRKTMDARQQN--MTNKRFTSLLFDPKEDC-VYLGGADGFGI  621 (758)
T ss_dssp             EE-S--SCEEEEETTTCCEEEC----CCCCCSEEEEETTTTE-EEEECBSEEEE
T ss_pred             EC-C--CCeEEEcCCCceeEEec--CCCCceeeeEEECCCCc-EEEecCCceEE
Confidence            43 3  45788888766543211  111223334443 4554 55566677443

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=94.73  E-value=1.5  Score=38.77  Aligned_cols=168  Identities=11%  Similarity=0.053  Sum_probs=84.9

Q ss_pred             CcceEEEEEeCCCCEEEEecCCCeEEEEEcccc-eEEeeeccceeeeccceeeEEeCCCCCeEEEEe-------cCCeEE
Q 040370           19 THNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTF-QCYLSANVPEISVNGAINQVRYSSTGGMYVTAS-------KDGAIR   90 (228)
Q Consensus        19 ~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-------~dg~v~   90 (228)
                      +.+|.-=.|-. .+.|+-.+ +..|.-|++... .+.+.+..+..-....|..-.-+++.++++..+       -.|.+.
T Consensus       105 ~e~VvfWkWis-~~~l~lVT-~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQ  182 (1630)
T 1xi4_A          105 TDDVTFWKWIS-LNTVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQ  182 (1630)
T ss_pred             CCCceEEEecC-CCeeEEEc-CCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceee
Confidence            34555555543 33444444 347899999642 222222211100134566666778888666433       348899


Q ss_pred             EEeCCCCceeeEEecccccceeEEEEEC--C-CCCEEEEee---CCCeEEEEEccCC---eeEEE-------Eecceeee
Q 040370           91 LWDGVSANCVRSIVGAHGTAEATSANFT--K-DQRFVLSCG---KDSTVKLWEVSSG---RLVKQ-------YLGATHTQ  154 (228)
Q Consensus        91 iwd~~~~~~~~~~~~~~~~~~i~~~~~~--~-~~~~l~~~~---~d~~i~~wd~~~~---~~~~~-------~~~~~~~~  154 (228)
                      +|..+.+. .+.+.+|.  .....+...  + ....++.+.   ..+.+++-++...   .....       +.......
T Consensus       183 LyS~er~~-sQ~iegha--~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~D  259 (1630)
T 1xi4_A          183 LYSVDRKV-SQPIEGHA--ASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQND  259 (1630)
T ss_pred             eeeccccc-chhhhHhH--hhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccC
Confidence            99876442 23333331  111111111  1 111222221   1368888888543   11110       11111233


Q ss_pred             eeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEe
Q 040370          155 LRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKW  192 (228)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~  192 (228)
                      ....+..++....++.... -|.+.+||+.++..+..-
T Consensus       260 fpv~~~vs~k~g~iy~itk-~G~~~~~d~~t~~~i~~~  296 (1630)
T 1xi4_A          260 FPVAMQISEKHDVVFLITK-YGYIHLYDLETGTCIYMN  296 (1630)
T ss_pred             cceEEEeccccCEEEEEec-CceEEEEecccchhhhhc
Confidence            4455666666666666555 499999999999876654

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=93.45  E-value=2  Score=32.97  Aligned_cols=107  Identities=14%  Similarity=0.109  Sum_probs=60.4

Q ss_pred             ceeeEEeCCCCC-eEEEEecCCeEEEEeCCCCc---eeeEEecc-------cccceeEEEEECCC----CCEEEEeeC--
Q 040370           67 AINQVRYSSTGG-MYVTASKDGAIRLWDGVSAN---CVRSIVGA-------HGTAEATSANFTKD----QRFVLSCGK--  129 (228)
Q Consensus        67 ~i~~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~---~~~~~~~~-------~~~~~i~~~~~~~~----~~~l~~~~~--  129 (228)
                      ....|+|.|++. .++.+...|.|++++.....   .+..+...       ........++|+|+    +.+.++-+.  
T Consensus        15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~~   94 (463)
T 2wg3_C           15 QPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTNQ   94 (463)
T ss_dssp             SEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEECC
T ss_pred             CceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCCC
Confidence            457899999986 46666788999999754221   22222110       01345788999996    333333221  


Q ss_pred             C----------CeEEEEEccC----------CeeEEEEecceeeeeeeEEEECCCCcEEEEeeC
Q 040370          130 D----------STVKLWEVSS----------GRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDE  173 (228)
Q Consensus       130 d----------~~i~~wd~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (228)
                      +          ..|.-|.+..          .+.+..+...........+.|.|++.+.++.|.
T Consensus        95 ~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd  158 (463)
T 2wg3_C           95 ERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGD  158 (463)
T ss_dssp             CSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECC
T ss_pred             CCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCC
Confidence            1          1344455532          122333321112234568899999987777765

>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*

Probab=93.44  E-value=1.8  Score=32.29  Aligned_cols=196  Identities=8%  Similarity=0.075  Sum_probs=107.4

Q ss_pred             cceEEEEEeCCCCEEE--Eec-------------CCCeEEEEEcccc--eEEeeecccee--eeccceeeEEeC---CC-
Q 040370           20 HNVRSVSFHPSGDFLL--AGT-------------DHPIAHLYDVNTF--QCYLSANVPEI--SVNGAINQVRYS---ST-   76 (228)
Q Consensus        20 ~~v~~~~~~~~~~~l~--~~~-------------~d~~i~vw~~~~~--~~~~~~~~~~~--~~~~~i~~~~~~---~~-   76 (228)
                      -.|..+...+.+.+=+  +|-             .-..|.+||+.++  +.++.+..+..  ...+.+..+.+.   |. 
T Consensus        87 vsV~~v~iD~~~rLWVLDtG~~~~~~~~~~~~~~~~pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~  166 (381)
T 3q6k_A           87 TSIYQPVIDDCRRLWVVDIGSVEYRSRGAKDYPSHRPAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKG  166 (381)
T ss_dssp             SCEEEEEECTTCEEEEEECSSCSSCSTTGGGSCCCCCEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTT
T ss_pred             EEeeEEEEcCCCcEEEEeCCCcCcCCCccccCCCCCceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCC
Confidence            3566677766554333  221             1236889999999  88777665421  114567778776   22 


Q ss_pred             ---CCeEEEE-ecCCeEEEEeCCCCceeeEEeccc-----------c-----cceeEEEEECCC----CCEEEEeeCCC-
Q 040370           77 ---GGMYVTA-SKDGAIRLWDGVSANCVRSIVGAH-----------G-----TAEATSANFTKD----QRFVLSCGKDS-  131 (228)
Q Consensus        77 ---~~~l~~~-~~dg~v~iwd~~~~~~~~~~~~~~-----------~-----~~~i~~~~~~~~----~~~l~~~~~d~-  131 (228)
                         +.++..+ +..+.|.|+|+.+++..+......           +     ...+..++++|+    ++.|+-....+ 
T Consensus       167 ~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~  246 (381)
T 3q6k_A          167 DCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKAERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAI  246 (381)
T ss_dssp             TSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSCCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCS
T ss_pred             CCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCccccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCC
Confidence               2333333 346789999999887665542100           0     236788888887    66666555443 


Q ss_pred             eEEEEE---ccCCee---EEEEeccee-eeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCC-c---ceeEEee-cCCCCC
Q 040370          132 TVKLWE---VSSGRL---VKQYLGATH-TQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALT-A---EKVAKWS-SNHIGA  199 (228)
Q Consensus       132 ~i~~wd---~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~-~---~~~~~~~-~~~~~~  199 (228)
                      .++-..   +++...   +..+ +... ..........+....++.+.-+...|..|+..+ .   +....+. ...-..
T Consensus       247 ~ly~V~T~~L~~~~~~~~v~~~-G~kg~~s~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~  325 (381)
T 3q6k_A          247 KVYSVNTKELKQKGGKLNPELL-GNRGKYNDAIALAYDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSRFVF  325 (381)
T ss_dssp             EEEEEEHHHHSSTTCCCCCEEE-EECCTTCCEEEEEECTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECTTCCS
T ss_pred             cEEEEEHHHhhCcchhhceEEe-eecCCCCCcceEEEeCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECCCccc
Confidence            233333   122211   1111 1111 112234456544445555556679999999875 1   1222221 223345


Q ss_pred             cEEEEeCCCCcEEEEec
Q 040370          200 PRWIEHSPAEAAFITCG  216 (228)
Q Consensus       200 v~~~~~~~~~~~l~s~~  216 (228)
                      +..+.+.+++.+.+++.
T Consensus       326 pd~~~i~~~g~Lwv~sn  342 (381)
T 3q6k_A          326 GTDISVDSKGGLWFMSN  342 (381)
T ss_dssp             EEEEEECTTSCEEEEEC
T ss_pred             cCeEEECCCCeEEEEEC
Confidence            77888888877666554

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=92.30  E-value=2.2  Score=30.29  Aligned_cols=162  Identities=8%  Similarity=0.014  Sum_probs=73.7

Q ss_pred             CCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCC-CceeeEEecccccceeEEEEEC
Q 040370           40 HPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVS-ANCVRSIVGAHGTAEATSANFT  118 (228)
Q Consensus        40 d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~-~~~~~~~~~~~~~~~i~~~~~~  118 (228)
                      ||.|..|-.............    ...|..++....  +.+.-. ||.|..|-... ++.-....   ....|..++..
T Consensus        80 ~G~v~~wG~n~~Gqlg~P~~~----~~~v~~ia~G~~--hs~al~-~G~v~~wG~n~~gqlg~~~~---~~~~i~~i~~G  149 (282)
T 3qhy_B           80 DGEVIAWGGNEDGQTTVPAEA----RSGVDAIAAGAW--ASYALK-DGKVIAWGDDSDGQTTVPAE---AQSGVTALDGG  149 (282)
T ss_dssp             TTEEEEEECCTTSTTCCCGGG----SSSEEEEEEETT--EEEEEE-TTEEEEEECCTTSTTSCCGG---GGSSEEEEEEC
T ss_pred             CCEEEEeeCCCCCCCCCCccc----CCCeEEEECcCC--EEEEEe-CCeEEEecCCCCCcCCCCcc---CCCCeEEEEcc
Confidence            677777765432111110000    235666655433  333334 88888886543 22211111   13456666554


Q ss_pred             CCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCC
Q 040370          119 KDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIG  198 (228)
Q Consensus       119 ~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~  198 (228)
                      .+.. ++ -. ||.++.|-......+..-..  ....+..+...  ....++. . ||.++.|-......+..- .....
T Consensus       150 ~~~~-~~-l~-~G~v~~wG~n~~gqlg~p~~--~~~~v~~i~~G--~~hs~al-~-~G~v~~wG~n~~gqlg~p-~~~~~  219 (282)
T 3qhy_B          150 VYTA-LA-VK-NGGVIAWGDNYFGQTTVPAE--AQSGVDDVAGG--IFHSLAL-K-DGKVIAWGDNRYKQTTVP-TEALS  219 (282)
T ss_dssp             SSEE-EE-EE-TTEEEEEECCTTSTTSCCGG--GGSSEEEEEEC--SSEEEEE-E-TTEEEEEECCTTSTTCCC-GGGGS
T ss_pred             cCEE-EE-EE-CCEEEEecCCCCCCCCCcee--cCCCeEEEEec--CCEEEEE-E-CCeEEEEECCCCCCCCCC-cccCC
Confidence            3322 22 23 68888887653221110000  11223333332  2233333 3 689999965433222111 11223


Q ss_pred             CcEEEEeCCCCcEEEEecCCCCEEEe
Q 040370          199 APRWIEHSPAEAAFITCGTDRSVRFW  224 (228)
Q Consensus       199 ~v~~~~~~~~~~~l~s~~~dg~i~vw  224 (228)
                      .|..++.......+++   ||.|..|
T Consensus       220 ~v~~i~~G~~h~~al~---~g~v~~w  242 (282)
T 3qhy_B          220 GVSAIASGEWYSLALK---NGKVIAW  242 (282)
T ss_dssp             SCCEEEECSSCEEEEE---TTEEEEE
T ss_pred             CceEEEcCCCEEEEEE---CCEEEEe
Confidence            5666666544433333   7777777

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=92.25  E-value=4.1  Score=33.35  Aligned_cols=186  Identities=10%  Similarity=0.022  Sum_probs=103.3

Q ss_pred             ceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCCCcee
Q 040370           21 NVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANCV  100 (228)
Q Consensus        21 ~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~  100 (228)
                      .|.++.. .++ .|..++.+ -+..++..+++..........-....|.++...+++.+.+ |+.+ -+..+|..+++..
T Consensus       104 ~i~~i~~-~~g-~lWigt~~-Gl~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~~~~~~  178 (758)
T 3ott_A          104 DVRTMAL-QGD-TLWLGALN-GLYTYQLQSRKLTSFDTRRNGLPNNTIYSIIRTKDNQIYV-GTYN-GLCRYIPSNGKFE  178 (758)
T ss_dssp             CEEEEEE-ETT-EEEEEETT-EEEEEETTTCCEEEECHHHHCCSCSCEEEEEECTTCCEEE-EETT-EEEEEETTTTEEE
T ss_pred             eEEEEEe-cCC-cEEEEcCC-cceeEeCCCCeEEEeccCCCCcCCCeEEEEEEcCCCCEEE-EeCC-CHhhCccCCCceE
Confidence            4666654 244 45556655 5778887765533221110000134678888877777554 4544 4777887665432


Q ss_pred             eEEeccc----ccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCC
Q 040370          101 RSIVGAH----GTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSN  176 (228)
Q Consensus       101 ~~~~~~~----~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  176 (228)
                       .+....    ....|.++...+++..|..|+. +-+..+|..+++... +.. .....+.++...+++...+.+ .  +
T Consensus       179 -~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~-~~~-l~~~~i~~i~~d~~g~lWigT-~--~  251 (758)
T 3ott_A          179 -GIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQ-TEA-FHNNSIKSLALDGNGDLLAGT-D--N  251 (758)
T ss_dssp             -EECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEEE-EEE-EEEEEEEEEEECTTCCEEEEE-T--T
T ss_pred             -EecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEEe-ccC-CCCCeEEEEEEcCCCCEEEEe-C--C
Confidence             221111    1234788877777665555554 458889987765432 211 123456677777777777665 2  4


Q ss_pred             eEEEEEcCCcceeEEeec------CCCCCcEEEEeCCCCcEEEEecCCC
Q 040370          177 EIVIWDALTAEKVAKWSS------NHIGAPRWIEHSPAEAAFITCGTDR  219 (228)
Q Consensus       177 ~i~i~d~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~l~s~~~dg  219 (228)
                      .+.+++..+++.......      -....|.++....+|.+.+ |+..|
T Consensus       252 Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWi-GT~~G  299 (758)
T 3ott_A          252 GLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQEHNIWL-GTDYG  299 (758)
T ss_dssp             EEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECTTCCEEE-EESSS
T ss_pred             ceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcCCCCEEE-EeCCc
Confidence            688888766543222100      1223588888887776544 33445

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=92.03  E-value=3.5  Score=34.90  Aligned_cols=38  Identities=16%  Similarity=0.172  Sum_probs=32.9

Q ss_pred             eeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEe
Q 040370          111 EATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYL  148 (228)
Q Consensus       111 ~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~  148 (228)
                      .+.++...++..++++-+.|+++|+|++.+++++.+..
T Consensus       237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d  274 (950)
T 4gq2_M          237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE  274 (950)
T ss_dssp             CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred             eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence            46677778888899999999999999999999887754

>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}

Probab=91.50  E-value=1.7  Score=34.47  Aligned_cols=59  Identities=19%  Similarity=0.331  Sum_probs=42.7

Q ss_pred             eeeEEeCCCCCeEEEEecC------------CeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEe
Q 040370           68 INQVRYSSTGGMYVTASKD------------GAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSC  127 (228)
Q Consensus        68 i~~~~~~~~~~~l~~~~~d------------g~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  127 (228)
                      .--|+|+|.|++++.-..+            ..+.+.+..+++..+.+..+. ..+++.++|+||++.|+..
T Consensus       478 PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~-gaE~TG~~fspDg~tlfvn  548 (592)
T 3zwu_A          478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPI-GCEVTGISFSPDQKTLFVG  548 (592)
T ss_dssp             EEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCT-TCEEEEEEECTTSSEEEEE
T ss_pred             CcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCC-CccCcCeeECCCCCEEEEE
Confidence            3568899999866654322            246666777777766666653 7899999999999887765

>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1

Probab=91.45  E-value=3  Score=30.26  Aligned_cols=191  Identities=9%  Similarity=0.026  Sum_probs=96.0

Q ss_pred             CCCCEEEEecCCCeEEEEEcccceEEe--eeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeC---CC------C
Q 040370           29 PSGDFLLAGTDHPIAHLYDVNTFQCYL--SANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDG---VS------A   97 (228)
Q Consensus        29 ~~~~~l~~~~~d~~i~vw~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~---~~------~   97 (228)
                      |+...+++.+.+|.|+--.+...+...  .....  . ...+..+........++..+..|.+.-...   ..      |
T Consensus         3 ~~e~~~v~lT~~G~IKr~~~~~~~~~~~~~~~lk--e-~D~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G   79 (323)
T 1wp5_A            3 ASEDVIVTVTKDGYVKRTSLRSYAASNGQDFAMK--D-TDRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLG   79 (323)
T ss_dssp             SCCEEEEEEETTCEEEEEEHHHHHHTTTCCCCCC--T-TCCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCC
T ss_pred             cCCcEEEEEeCCCEEEEeEHHHhhhcCccccccC--C-CCEEEEEEEECCCCEEEEEECCCEEEEEEHHHCcCCCCCCCC
Confidence            567778889999999877665322100  00111  1 344444444445556777777887665543   22      2


Q ss_pred             ceeeE-EecccccceeEEE-EECC--CCCEEEEeeCCCeEEEEEccCCee------EEEEecceeeeeeeEEEECCCCcE
Q 040370           98 NCVRS-IVGAHGTAEATSA-NFTK--DQRFVLSCGKDSTVKLWEVSSGRL------VKQYLGATHTQLRFQAVFNDTEEF  167 (228)
Q Consensus        98 ~~~~~-~~~~~~~~~i~~~-~~~~--~~~~l~~~~~d~~i~~wd~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~  167 (228)
                      .++.. +.... ...|.++ ...+  ++.+++..+..|.++--.+..-..      +..+..... ..+..+........
T Consensus        80 ~~i~~~i~L~~-~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e~-d~lv~~~~~~~~~~  157 (323)
T 1wp5_A           80 QHIANIIPIDR-DEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKND-DQVVDVHLTDGMNE  157 (323)
T ss_dssp             EEGGGTSCCCT-TCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCTT-CCEEEEEEECSCSE
T ss_pred             cChhhccCCCC-CCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCCC-CEEEEEEEeCCCCE
Confidence            21111 11111 3345543 4433  356789999999999998753221      111111112 22333333333344


Q ss_pred             EEEeeCCCCeEEEEEcCCcce-------eEEeecCCCCCcEEEEeCCCCc-EEEEecCCCCEEEee
Q 040370          168 VLSIDEPSNEIVIWDALTAEK-------VAKWSSNHIGAPRWIEHSPAEA-AFITCGTDRSVRFWK  225 (228)
Q Consensus       168 ~~~~~~~d~~i~i~d~~~~~~-------~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~dg~i~vwd  225 (228)
                      ++.... +|.+..++...-..       +.-+.......|.++...+++. .|++.+..|..+.-+
T Consensus       158 i~l~T~-~G~~irf~~~ev~~~gR~a~GV~~i~L~~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~  222 (323)
T 1wp5_A          158 LFLVTH-NGYALWFDESEVSIVGVRAAGVKGMNLKEGDYIVSGQLITSKDESIVVATQRGAVKKMK  222 (323)
T ss_dssp             EEEEET-TSEEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEECCTTCEEEEEETTSEEEEEE
T ss_pred             EEEEeC-CCcEEEEEHHHCcccCCCCcCEEEEEeCCCCEEEEEEEEcCCCcEEEEEECCCceEEEE
Confidence            444444 48888787643211       1111112234566654434344 677777777766544

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=90.02  E-value=3.8  Score=29.01  Aligned_cols=181  Identities=9%  Similarity=0.030  Sum_probs=86.1

Q ss_pred             cceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCCCce
Q 040370           20 HNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANC   99 (228)
Q Consensus        20 ~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~   99 (228)
                      ..|..++..... .++. . ||.|..|-......+..   +... ...|..++...... ++. . ||.|..|-......
T Consensus        24 ~~i~~ia~G~~h-~~~l-~-~G~v~~wG~n~~Gqlg~---p~~~-~~~i~~ia~G~~hs-~~l-~-~G~v~~wG~n~~Gq   93 (282)
T 3qhy_B           24 SGVDAIAGGYFH-GLAL-K-GGKVLGWGANLNGQLTM---PAAT-QSGVDAIAAGNYHS-LAL-K-DGEVIAWGGNEDGQ   93 (282)
T ss_dssp             SSCCEEEECSSE-EEEE-E-TTEEEEEECCSSSTTSC---CGGG-GSCCCEEEECSSEE-EEE-E-TTEEEEEECCTTST
T ss_pred             CCCcEEEeCCCe-EEEE-E-CCEEEEEeCCCCCCCCC---CccC-CCCEEEEEeCCCEE-EEE-E-CCEEEEeeCCCCCC
Confidence            356777664332 2222 4 89999997654321111   1111 34677777654332 333 4 89999997554221


Q ss_pred             eeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCCeEE
Q 040370          100 VRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIV  179 (228)
Q Consensus       100 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~  179 (228)
                      +.. +... ...|..++...+.  .+.-. ||.|+.|-....-.+.....  ....+..+....  .+.++..  ||.++
T Consensus        94 lg~-P~~~-~~~v~~ia~G~~h--s~al~-~G~v~~wG~n~~gqlg~~~~--~~~~i~~i~~G~--~~~~~l~--~G~v~  162 (282)
T 3qhy_B           94 TTV-PAEA-RSGVDAIAAGAWA--SYALK-DGKVIAWGDDSDGQTTVPAE--AQSGVTALDGGV--YTALAVK--NGGVI  162 (282)
T ss_dssp             TCC-CGGG-SSSEEEEEEETTE--EEEEE-TTEEEEEECCTTSTTSCCGG--GGSSEEEEEECS--SEEEEEE--TTEEE
T ss_pred             CCC-Cccc-CCCeEEEECcCCE--EEEEe-CCeEEEecCCCCCcCCCCcc--CCCCeEEEEccc--CEEEEEE--CCEEE
Confidence            111 1111 2356666655433  33334 89999997654221111000  112233333322  2222222  58888


Q ss_pred             EEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEee
Q 040370          180 IWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWK  225 (228)
Q Consensus       180 i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd  225 (228)
                      .|-......+.. +..-...|..++...... ++.  .||.|..|=
T Consensus       163 ~wG~n~~gqlg~-p~~~~~~v~~i~~G~~hs-~al--~~G~v~~wG  204 (282)
T 3qhy_B          163 AWGDNYFGQTTV-PAEAQSGVDDVAGGIFHS-LAL--KDGKVIAWG  204 (282)
T ss_dssp             EEECCTTSTTSC-CGGGGSSEEEEEECSSEE-EEE--ETTEEEEEE
T ss_pred             EecCCCCCCCCC-ceecCCCeEEEEecCCEE-EEE--ECCeEEEEE
Confidence            886544222211 111234566666644333 232  477777773

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=89.30  E-value=2.3  Score=36.74  Aligned_cols=38  Identities=26%  Similarity=0.314  Sum_probs=31.4

Q ss_pred             ceeeEEeCCCCCeEEEEecCCeEEEEeCCCCceeeEEe
Q 040370           67 AINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIV  104 (228)
Q Consensus        67 ~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~  104 (228)
                      .+.+++..++..++++-+.|+++|+|++.+++++....
T Consensus       239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~D  276 (1139)
T 4fhn_B          239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE  276 (1139)
T ss_dssp             CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred             eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence            44556666778899999999999999999998887754

>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*

Probab=89.20  E-value=5.1  Score=31.70  Aligned_cols=61  Identities=16%  Similarity=0.288  Sum_probs=43.0

Q ss_pred             ceeeEEeCCCCCeEEEEec------------CCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEee
Q 040370           67 AINQVRYSSTGGMYVTASK------------DGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCG  128 (228)
Q Consensus        67 ~i~~~~~~~~~~~l~~~~~------------dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~  128 (228)
                      ....|.|.++|.+.+....            ...|..++..+++....+.... ..+++.++|+||++.|+.+-
T Consensus       477 sPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~-~aEpnGiafSPD~ktLfV~v  549 (592)
T 4a9v_A          477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPI-GCEVTGISFSPDQKTLFVGI  549 (592)
T ss_dssp             CEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCT-TCEEEEEEECTTSSEEEEEE
T ss_pred             CCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCC-CccccCCEECCCCCEEEEEE
Confidence            4567999999987763321            1257777877777665554332 46789999999999887764

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=89.15  E-value=2.7  Score=35.55  Aligned_cols=38  Identities=26%  Similarity=0.314  Sum_probs=32.3

Q ss_pred             ceeeEEeCCCCCeEEEEecCCeEEEEeCCCCceeeEEe
Q 040370           67 AINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIV  104 (228)
Q Consensus        67 ~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~  104 (228)
                      .+.+++..++..++++-+.|+++|+|++.+++++....
T Consensus       237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d  274 (950)
T 4gq2_M          237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE  274 (950)
T ss_dssp             CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred             eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence            46677777788899999999999999999998877654

>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}

Probab=88.46  E-value=5.7  Score=28.91  Aligned_cols=118  Identities=13%  Similarity=0.162  Sum_probs=73.1

Q ss_pred             CcceEEEEEeC---CCCEEEEecCCCeEEEEEcccceEEe-----eeccceeeeccceeeEEeCCCCCeEEEEecCCeEE
Q 040370           19 THNVRSVSFHP---SGDFLLAGTDHPIAHLYDVNTFQCYL-----SANVPEISVNGAINQVRYSSTGGMYVTASKDGAIR   90 (228)
Q Consensus        19 ~~~v~~~~~~~---~~~~l~~~~~d~~i~vw~~~~~~~~~-----~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~   90 (228)
                      ...|.++..-+   +..+++..+.+|.++--.+.......     ......   ...+..+........++..+..|.+.
T Consensus        94 ~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke---~D~lv~~~~~~~~d~ill~T~~G~~~  170 (327)
T 3uc1_A           94 EERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRD---NDELVGAVLCSAGDDLLLVSANGQSI  170 (327)
T ss_dssp             TCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCT---TCCEEEEEEECTTCEEEEEETTSEEE
T ss_pred             CCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECC---CCEEEEEEEecCCCEEEEEECCCeEE
Confidence            45566554433   57799999999999999877643211     111111   34455555544556788888889988


Q ss_pred             EEeCC--CC----ce---eeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccC
Q 040370           91 LWDGV--SA----NC---VRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSS  140 (228)
Q Consensus        91 iwd~~--~~----~~---~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~  140 (228)
                      .+...  .-    +.   ...+... ....|.++...+++.+++..+..|.++.-.+..
T Consensus       171 rf~~~~~eip~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e  228 (327)
T 3uc1_A          171 RFSATDEALRPMGRATSGVQGMRFN-IDDRLLSLNVVREGTYLLVATSGGYAKRTAIEE  228 (327)
T ss_dssp             EEECCTTTSCCCCTTSBCEESSCCC-TTCCEEEEEECCTTCEEEEEETTSEEEEEEGGG
T ss_pred             EEECcccccCcCCcCCCCeeeecCC-CCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHH
Confidence            88765  21    10   1111111 145566666666667899999999999888754

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=88.12  E-value=2.4  Score=36.68  Aligned_cols=38  Identities=16%  Similarity=0.172  Sum_probs=31.0

Q ss_pred             eeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEe
Q 040370          111 EATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYL  148 (228)
Q Consensus       111 ~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~  148 (228)
                      .+.+++..++..++++-+.|+++|+|++.+++++.+..
T Consensus       239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~D  276 (1139)
T 4fhn_B          239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE  276 (1139)
T ss_dssp             CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred             eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence            33445556778899999999999999999999887754

>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1

Probab=87.37  E-value=6.5  Score=28.35  Aligned_cols=192  Identities=10%  Similarity=0.060  Sum_probs=99.3

Q ss_pred             CCCCEEEEecCCCeEEEEEcccceEEe-------eeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCC---C-
Q 040370           29 PSGDFLLAGTDHPIAHLYDVNTFQCYL-------SANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVS---A-   97 (228)
Q Consensus        29 ~~~~~l~~~~~d~~i~vw~~~~~~~~~-------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~---~-   97 (228)
                      |+...+++.+.+|.|+--.+...+...       ......   ...+..+........++..+..|.++-.....   . 
T Consensus         6 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke---~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~   82 (312)
T 1suu_A            6 QKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLND---GDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSS   82 (312)
T ss_dssp             --CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCT---TCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC--
T ss_pred             CCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCC---CCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCC
Confidence            566788899999999988776543211       111111   33444554444556677777888877665432   1 


Q ss_pred             -----ceee-EEecccccceeEEEEECC---CCCEEEEeeCCCeEEEEEccCCeeE-----EEEecceeeeeeeEEEECC
Q 040370           98 -----NCVR-SIVGAHGTAEATSANFTK---DQRFVLSCGKDSTVKLWEVSSGRLV-----KQYLGATHTQLRFQAVFND  163 (228)
Q Consensus        98 -----~~~~-~~~~~~~~~~i~~~~~~~---~~~~l~~~~~d~~i~~wd~~~~~~~-----~~~~~~~~~~~~~~~~~~~  163 (228)
                           ..+. .+.... ...|..+...+   +..+++..+..|.++.-.+..-...     ..+... ....+..+....
T Consensus        83 r~~~G~~i~~~l~l~~-~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~-~~d~lv~~~~~~  160 (312)
T 1suu_A           83 RASKGQNISELINLGD-QEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLN-DKDFVTSAEIVF  160 (312)
T ss_dssp             -----CBGGGTSCCCT-TCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCC-TTCCEEEEEEEC
T ss_pred             ccCCCcChhhccCCCC-CCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecC-CCCEEEEEEEeC
Confidence                 1100 111111 33444443222   4567888899999999887543211     111111 122233333333


Q ss_pred             CCcEEEEeeCCCCeEEEEEcCCcce-------eEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeee
Q 040370          164 TEEFVLSIDEPSNEIVIWDALTAEK-------VAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKE  226 (228)
Q Consensus       164 ~~~~~~~~~~~d~~i~i~d~~~~~~-------~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~  226 (228)
                      ....++.... +|....+....-..       +..+.......|.++..-+++..+++.+..|..+..++
T Consensus       161 ~~~~i~l~T~-~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~  229 (312)
T 1suu_A          161 KDEKVICLSK-KGSAFIFNSRDVRLTNRGTQGVCGMKLKEGDLFVKVLSVKENPYLLIVSENGYGKRLNM  229 (312)
T ss_dssp             TTCEEEEEET-TSEEEEEEGGGSCBCCTTBCCEECCCCCTTCCEEEEEECTTCSEEEEEETTSEEEEEEG
T ss_pred             CCCEEEEEeC-CCcEEEEEHHHccccCCCCCCeEeEEeCCCCEEEEEEEECCCCeEEEEECCCceEEEEH
Confidence            3444444444 48888887643111       11111122445666655555666778888888776654

>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}

Probab=87.37  E-value=3  Score=33.18  Aligned_cols=59  Identities=10%  Similarity=0.058  Sum_probs=40.5

Q ss_pred             eEEEEEeCCCCEEEEecCC------------CeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEE
Q 040370           22 VRSVSFHPSGDFLLAGTDH------------PIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTA   83 (228)
Q Consensus        22 v~~~~~~~~~~~l~~~~~d------------~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~   83 (228)
                      .--|+|+|.|.++++-..+            ..+.+.+..+++.......+.   ...++.++|+|+++.|+..
T Consensus       478 PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~---gaE~TG~~fspDg~tlfvn  548 (592)
T 3zwu_A          478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPI---GCEVTGISFSPDQKTLFVG  548 (592)
T ss_dssp             EEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCT---TCEEEEEEECTTSSEEEEE
T ss_pred             CcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCC---CccCcCeeECCCCCEEEEE
Confidence            3568899999866654321            345566666777655544432   6789999999999877765

>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*

Probab=86.71  E-value=6  Score=31.34  Aligned_cols=61  Identities=15%  Similarity=0.042  Sum_probs=42.2

Q ss_pred             eeeEEEECCCCcEEEEeeCC-----------CCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEe
Q 040370          155 LRFQAVFNDTEEFVLSIDEP-----------SNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITC  215 (228)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~-----------d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~  215 (228)
                      ..-.+.|.++|...+++...           ...+..++..+++....+.......++.++|+||++.|+.+
T Consensus       477 sPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~  548 (592)
T 4a9v_A          477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG  548 (592)
T ss_dssp             CEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred             CCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEE
Confidence            34568889999888865432           12677777777776554422234578999999999988765

>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}

Probab=85.37  E-value=7.9  Score=27.36  Aligned_cols=194  Identities=11%  Similarity=-0.018  Sum_probs=102.0

Q ss_pred             cceEEEEEeCCCCEEEEecCCCeEEEE---EcccceEEeeeccceeeeccceeeEEeCC-CCCeEEEEecCCeEEEEeCC
Q 040370           20 HNVRSVSFHPSGDFLLAGTDHPIAHLY---DVNTFQCYLSANVPEISVNGAINQVRYSS-TGGMYVTASKDGAIRLWDGV   95 (228)
Q Consensus        20 ~~v~~~~~~~~~~~l~~~~~d~~i~vw---~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~v~iwd~~   95 (228)
                      +.+..+.-....++|+.-++.|.++--   ++....... + ..  . ...|..+.... +..+++..+.+|.++-..+.
T Consensus        24 D~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~~~~~-l-l~--~-~e~i~~v~~~~~~~~~~v~~T~~G~iKr~~l~   98 (276)
T 3no0_A           24 APVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQGSKVS-L-KS--R-EEKIVGAFIREKFGNRLLLATKKGYVKKIPLA   98 (276)
T ss_dssp             CCEEEEEEEETTSCEEEEETTSEEEEECSHHHHTSEECC-C-SS--T-TCCEEEEEEGGGSCSEEEEEETTSEEEEEEGG
T ss_pred             CeEEEEEEECCCCEEEEEcCCCeEEEEEhhhCccCcccc-c-CC--C-CCEEEEEECCcCCCCEEEEEeCCCEEEEEEHH
Confidence            456666555556677777778876543   333222111 2 11  1 45566664421 46789999999999999865


Q ss_pred             CCc----eeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCee-------EEEEecceeeeeeeEEEECCC
Q 040370           96 SAN----CVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRL-------VKQYLGATHTQLRFQAVFNDT  164 (228)
Q Consensus        96 ~~~----~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~-------~~~~~~~~~~~~~~~~~~~~~  164 (228)
                      .-.    -...+.... ...+..+........++..+..|.+..++...-..       +..+... ....+..+...++
T Consensus        99 ~~~~~~~G~~~i~lke-gD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~-~~d~vv~~~~~~~  176 (276)
T 3no0_A           99 EFEYKAQGMPIIKLTE-GDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKLE-KNDETSGLRIWNG  176 (276)
T ss_dssp             GTTTCSTTEECSCCCT-TCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTCCEEEEEEESS
T ss_pred             HhhhhcCCeEEEecCC-CCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccC-CCCEEEEEEEeCC
Confidence            432    111111111 34555555555666788888999988887643211       1111111 1233333333344


Q ss_pred             CcEEEEeeCCCCeEEEEEcCCc-------ceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEE
Q 040370          165 EEFVLSIDEPSNEIVIWDALTA-------EKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRF  223 (228)
Q Consensus       165 ~~~~~~~~~~d~~i~i~d~~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~v  223 (228)
                      +.+++.... .|.++...+..-       +-...+  ...+.+..+....+...++..+.+|.+..
T Consensus       177 ~~~ll~~T~-~G~~kr~~~~e~~~~~R~gkGv~~i--~~~~~lv~~~~~~~~~~i~~~t~~G~~ir  239 (276)
T 3no0_A          177 EPYLLVITA-KGRVKKISHEEIPKTNRGVKGTEVS--GTKDTLVDLIPIKEEVELLITTKNGKAFY  239 (276)
T ss_dssp             CSEEEEEET-TSCEEEEEGGGSCCCCTTCCCEECC--CSSSCEEEEEEESSEEEEEEEETTSCEEE
T ss_pred             CCEEEEEeC-CCcEEEeEHHHcccCCCCCcceEEE--cCCCcEEEEEEeCCCCEEEEEcCCCeEEE
Confidence            445555455 488887765322       122222  22334544433333445666667777655

>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A

Probab=82.36  E-value=3.9  Score=33.28  Aligned_cols=37  Identities=19%  Similarity=0.483  Sum_probs=29.8

Q ss_pred             eeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEec
Q 040370          111 EATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLG  149 (228)
Q Consensus       111 ~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~  149 (228)
                      .|.++.+  +..++++-+.|+++|+|++++++++.....
T Consensus       223 ~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL  259 (729)
T 3f7f_A          223 VISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYDM  259 (729)
T ss_dssp             EEEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred             eEEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence            4555544  467999999999999999999998877654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	228
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	2e-14
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	4e-11
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	1e-07
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	6e-04
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	3e-14
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	5e-13
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	6e-06
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-13
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	5e-13
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	8e-10
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	1e-08
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	2e-10
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	2e-07
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	3e-04
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	0.003
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	4e-08
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	1e-07
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	6e-04
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	0.001
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	5e-08
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	5e-05
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	6e-08
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	8e-08
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	0.001
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	5e-07
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	5e-07
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	0.003
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	5e-07
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	4e-04
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	8e-07
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	5e-05
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	1e-04
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	0.002
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	0.002
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	9e-07
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	8e-05
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	1e-06
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	9e-05
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	0.003
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	1e-06
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	2e-06
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	8e-04
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	5e-06
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	6e-05
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-04
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	7e-06
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	1e-05
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	1e-05
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	4e-05
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	5e-05
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	8e-05
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	3e-04
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	9e-04
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	0.003
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	3e-04
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	0.003
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	6e-04

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 69.1 bits (167), Expect = 2e-14
 Identities = 22/132 (16%), Positives = 46/132 (34%), Gaps = 12/132 (9%)

Query: 19  THNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQ--------CYLSANVPEISVNGAINQ 70
             +V SV F   G  +++G+      L+++               +  V  I     +  
Sbjct: 254 KDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLS 313

Query: 71  VRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGT----AEATSANFTKDQRFVLS 126
           V  +      ++ SKD  +  WD  S N +  + G   +    A A  ++   +     +
Sbjct: 314 VATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFAT 373

Query: 127 CGKDSTVKLWEV 138
              D   ++W+ 
Sbjct: 374 GSGDCKARIWKY 385

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 59.8 bits (143), Expect = 4e-11
 Identities = 31/173 (17%), Positives = 52/173 (30%), Gaps = 21/173 (12%)

Query: 73  YSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEA-----TSANFTKDQRFVLSC 127
               G      S D A+R+WD  +   V  +   + +         S  FT+D + V+S 
Sbjct: 213 SPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSG 272

Query: 128 GKDSTVKLWEVSSGRLVKQYLGATHTQLR----------FQAVFNDTEEFVLSIDEPSNE 177
             D +VKLW + +                                  +E++LS  +    
Sbjct: 273 SLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSK-DRG 331

Query: 178 IVIWDALTAEKVAKWSS-----NHIGAPRWIEHSPAEAAFITCGTDRSVRFWK 225
           ++ WD  +   +            +         P    F T   D   R WK
Sbjct: 332 VLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWK 384

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.0 bits (115), Expect = 1e-07
 Identities = 13/79 (16%), Positives = 27/79 (34%), Gaps = 2/79 (2%)

Query: 17  QDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCY--LSANVPEISVNGAINQVRYS 74
                V SV+   + +++L+G+       +D  +      L  +   +      N     
Sbjct: 306 GHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLG 365

Query: 75  STGGMYVTASKDGAIRLWD 93
               ++ T S D   R+W 
Sbjct: 366 PEYNVFATGSGDCKARIWK 384

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.9 bits (86), Expect = 6e-04
 Identities = 40/226 (17%), Positives = 79/226 (34%), Gaps = 26/226 (11%)

Query: 19  THNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISV-------------- 64
           T  V  V F   G++L  G +     +Y V+        +    +               
Sbjct: 62  TSVVCCVKFSNDGEYLATGCNKTT-QVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSS 120

Query: 65  NGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFV 124
           +  I  V +S  G    T ++D  IR+WD  +   V  +       +  S ++      +
Sbjct: 121 DLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQ--GHEQDIYSLDYFPSGDKL 178

Query: 125 LSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDAL 184
           +S   D TV++W++ +G+                +  +       S+D     + +WD+ 
Sbjct: 179 VSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLD---RAVRVWDSE 235

Query: 185 TAEKVAKWSSN------HIGAPRWIEHSPAEAAFITCGTDRSVRFW 224
           T   V +  S       H  +   +  +    + ++   DRSV+ W
Sbjct: 236 TGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLW 281

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 68.6 bits (166), Expect = 3e-14
 Identities = 35/166 (21%), Positives = 59/166 (35%), Gaps = 7/166 (4%)

Query: 17  QDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSST 76
             T +V S+S  P     ++G     A L+DV    C  +    E      IN + +   
Sbjct: 182 GHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHE----SDINAICFFPN 237

Query: 77  GGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLW 136
           G  + T S D   RL+D  +   + +    +     TS +F+K  R +L+   D    +W
Sbjct: 238 GNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVW 297

Query: 137 EVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWD 182
           +           G  H          D    V +     + + IW+
Sbjct: 298 DALKADRAGVLAG--HDNRVSCLGVTDDGMAVATGSW-DSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 64.8 bits (156), Expect = 5e-13
 Identities = 24/157 (15%), Positives = 61/157 (38%), Gaps = 4/157 (2%)

Query: 68  INQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSC 127
           +  +  +    ++V+ + D + +LWD     C ++  G    ++  +  F  +     + 
Sbjct: 187 VMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTG--HESDINAICFFPNGNAFATG 244

Query: 128 GKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAE 187
             D+T +L+++ + + +  Y             F+ +   +L+  +      +WDAL A+
Sbjct: 245 SDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYD-DFNCNVWDALKAD 303

Query: 188 KVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFW 224
           +    +  H      +  +    A  T   D  ++ W
Sbjct: 304 RAGVLA-GHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 44.0 bits (102), Expect = 6e-06
 Identities = 26/245 (10%), Positives = 58/245 (23%), Gaps = 41/245 (16%)

Query: 19  THNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGG 78
              + ++ +      L++ +      ++D  T     +  +    V         +    
Sbjct: 55  LAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVAC 114

Query: 79  MYVTASKDGAIRLWDGVSANCVRSIVG--------------------------------- 105
             +              +    R + G                                 
Sbjct: 115 GGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETG 174

Query: 106 ------AHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQA 159
                    T +  S +   D R  +S   D++ KLW+V  G   + + G  H       
Sbjct: 175 QQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTG--HESDINAI 232

Query: 160 VFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDR 219
            F        +  + +   +       E +     N I     +  S +    +    D 
Sbjct: 233 CFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDF 292

Query: 220 SVRFW 224
           +   W
Sbjct: 293 NCNVW 297

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 66.3 bits (160), Expect = 2e-13
 Identities = 39/217 (17%), Positives = 82/217 (37%), Gaps = 26/217 (11%)

Query: 27  FHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKD 86
             P+GD +++ +      +++V T  C  +           +  VR +  G +  + S D
Sbjct: 109 IMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGH----REWVRMVRPNQDGTLIASCSND 164

Query: 87  GAIRLWDGVSANCVRSIVGAHGTAEA------------------TSANFTKDQRFVLSCG 128
             +R+W   +  C   +       E                    +    K   F+LS  
Sbjct: 165 QTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGS 224

Query: 129 KDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEK 188
           +D T+K+W+VS+G  +   +G  H       +F+   +F+LS  +    + +WD      
Sbjct: 225 RDKTIKMWDVSTGMCLMTLVG--HDNWVRGVLFHSGGKFILSCAD-DKTLRVWDYKNKRC 281

Query: 189 VAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWK 225
           +   ++ H      ++        +T   D++V+ W+
Sbjct: 282 MKTLNA-HEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 64.8 bits (156), Expect = 5e-13
 Identities = 34/191 (17%), Positives = 69/191 (36%), Gaps = 21/191 (10%)

Query: 8   TAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLS----------- 56
           T             VR V  +  G  + + ++     ++ V T +C              
Sbjct: 132 TGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECI 191

Query: 57  -----ANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAE 111
                ++   IS        +    G   ++ S+D  I++WD  +  C+ ++VG      
Sbjct: 192 SWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVG--HDNW 249

Query: 112 ATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSI 171
                F    +F+LSC  D T+++W+  + R +K      H        F+ T  +V++ 
Sbjct: 250 VRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNA--HEHFVTSLDFHKTAPYVVTG 307

Query: 172 DEPSNEIVIWD 182
                 + +W+
Sbjct: 308 SV-DQTVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 55.5 bits (132), Expect = 8e-10
 Identities = 39/262 (14%), Positives = 74/262 (28%), Gaps = 58/262 (22%)

Query: 19  THNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNG------------ 66
              V  V FHP    +++ ++     ++D  T     +      SV              
Sbjct: 17  RSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLAS 76

Query: 67  --------------------------AINQVRYSSTGGMYVTASKDGAIRLWDGVSANCV 100
                                      ++ V     G   V+AS+D  I++W+  +  CV
Sbjct: 77  CSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCV 136

Query: 101 RSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAV 160
           ++  G             +D   + SC  D TV++W V++     +     H        
Sbjct: 137 KTFTGHREWVRMVR--PNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWA 194

Query: 161 FNDTEEFVLSIDEPS-----------------NEIVIWDALTAEKVAKWSSNHIGAPRWI 203
              +   +                          I +WD  T   +      H    R +
Sbjct: 195 PESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTL-VGHDNWVRGV 253

Query: 204 EHSPAEAAFITCGTDRSVRFWK 225
                    ++C  D+++R W 
Sbjct: 254 LFHSGGKFILSCADDKTLRVWD 275

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 52.1 bits (123), Expect = 1e-08
 Identities = 20/90 (22%), Positives = 38/90 (42%), Gaps = 4/90 (4%)

Query: 4   FSKATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEIS 63
           +  +T      ++   + VR V FH  G F+L+  D     ++D    +C  + N  E  
Sbjct: 232 WDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHE-- 289

Query: 64  VNGAINQVRYSSTGGMYVTASKDGAIRLWD 93
               +  + +  T    VT S D  +++W+
Sbjct: 290 --HFVTSLDFHKTAPYVVTGSVDQTVKVWE 317

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.1 bits (136), Expect = 2e-10
 Identities = 18/119 (15%), Positives = 46/119 (38%), Gaps = 8/119 (6%)

Query: 20  HNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGM 79
             + S+ + P+G++L  G +     +  VN    Y             +  ++++  G  
Sbjct: 225 SQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY-----QLHLHESCVLSLKFAYCGKW 279

Query: 80  YVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEV 138
           +V+  KD  +  W       +        ++   S + + D +++++   D    ++EV
Sbjct: 280 FVSTGKDNLLNAWRTPYGASIFQS---KESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.7 bits (114), Expect = 2e-07
 Identities = 9/75 (12%), Positives = 24/75 (32%), Gaps = 5/75 (6%)

Query: 19  THNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGG 78
              V S+ F   G + ++     + + +            + +   + ++     S    
Sbjct: 265 ESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGAS-----IFQSKESSSVLSCDISVDDK 319

Query: 79  MYVTASKDGAIRLWD 93
             VT S D    +++
Sbjct: 320 YIVTGSGDKKATVYE 334

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.6 bits (88), Expect = 3e-04
 Identities = 9/69 (13%), Positives = 27/69 (39%), Gaps = 4/69 (5%)

Query: 114 SANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDE 173
           S  F    ++ +S GKD+ +  W    G  + Q      +        +  ++++++   
Sbjct: 270 SLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS---KESSSVLSCDISVDDKYIVTGSG 326

Query: 174 PSNEIVIWD 182
              +  +++
Sbjct: 327 -DKKATVYE 334

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.9 bits (81), Expect = 0.003
 Identities = 9/74 (12%), Positives = 23/74 (31%), Gaps = 3/74 (4%)

Query: 152 HTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAA 211
           H        F    ++ +S  +  N +  W       +  + S    +    + S  +  
Sbjct: 264 HESCVLSLKFAYCGKWFVSTGK-DNLLNAWRTPYGASI--FQSKESSSVLSCDISVDDKY 320

Query: 212 FITCGTDRSVRFWK 225
            +T   D+    ++
Sbjct: 321 IVTGSGDKKATVYE 334

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 50.6 bits (119), Expect = 4e-08
 Identities = 17/189 (8%), Positives = 51/189 (26%), Gaps = 3/189 (1%)

Query: 22  VRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYV 81
           +   +++     +    ++   H+Y+ +  +      + E +  G +  V ++      V
Sbjct: 10  ISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHN--GQVTGVDWAPDSNRIV 67

Query: 82  TASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSG 141
           T   D    +W         ++V       A    +  +++          + +      
Sbjct: 68  TCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQE 127

Query: 142 RLVKQYLGATHTQLRF-QAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAP 200
                             ++       +L+      +  I+ A   E   + +    G+ 
Sbjct: 128 NDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSK 187

Query: 201 RWIEHSPAE 209
                   E
Sbjct: 188 MPFGELMFE 196

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 49.1 bits (115), Expect = 1e-07
 Identities = 8/71 (11%), Positives = 24/71 (33%)

Query: 67  AINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLS 126
            I+   ++           +  + +++      V+         + T  ++  D   +++
Sbjct: 9   PISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVT 68

Query: 127 CGKDSTVKLWE 137
           CG D    +W 
Sbjct: 69  CGTDRNAYVWT 79

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 37.9 bits (86), Expect = 6e-04
 Identities = 18/236 (7%), Positives = 67/236 (28%), Gaps = 13/236 (5%)

Query: 2   FDFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPE 61
           ++ S     +   + +    V  V + P  + ++       A+++ +       +  +  
Sbjct: 34  YEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILR 93

Query: 62  ISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQ 121
           I+      +   +       + S+  +I  ++  +   V   +     +   S ++  + 
Sbjct: 94  INRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNS 153

Query: 122 RFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRF----QAVFNDTEEFVLSIDEPSNE 177
             + +   D   +++      + ++                   + +  +V  +   +N 
Sbjct: 154 VLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANG 213

Query: 178 IVIWDALTAEKVAKWSSN---------HIGAPRWIEHSPAEAAFITCGTDRSVRFW 224
             +        V    ++             P        E++ +  G D     +
Sbjct: 214 SRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAGHDCFPVLF 269

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 37.1 bits (84), Expect = 0.001
 Identities = 25/161 (15%), Positives = 46/161 (28%), Gaps = 6/161 (3%)

Query: 65  NGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFV 124
            G ++ V +S+ G      S D  + L D      V ++     T    +  F  +    
Sbjct: 201 CGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLA--SETLPLLAVTFITESSL- 257

Query: 125 LSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDAL 184
           ++ G D    L+   S      + G      +         E   ++D          A 
Sbjct: 258 VAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLD--KKASSEGSAA 315

Query: 185 TAEKVAKWSSNHIGAPRWIE-HSPAEAAFITCGTDRSVRFW 224
               +     N +     +       + F T G D  +  W
Sbjct: 316 AGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIW 356

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 50.4 bits (118), Expect = 5e-08
 Identities = 12/61 (19%), Positives = 27/61 (44%)

Query: 79  MYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEV 138
              T S D ++ +W+    +    I+       + ++    ++  ++S G+DS +K W V
Sbjct: 238 RLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNV 297

Query: 139 S 139
            
Sbjct: 298 P 298

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 41.1 bits (94), Expect = 5e-05
 Identities = 22/141 (15%), Positives = 38/141 (26%), Gaps = 1/141 (0%)

Query: 65  NGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFV 124
           N AI  +  S+ G    +A  +G I  WD  +    R     H     T    T      
Sbjct: 12  NKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVH-ATMITGIKTTSKGDLF 70

Query: 125 LSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDAL 184
                D    +    SG    + +    +        +   +  ++       I     L
Sbjct: 71  TVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKL 130

Query: 185 TAEKVAKWSSNHIGAPRWIEH 205
           T   ++  SS    +      
Sbjct: 131 TEVPISYNSSCVALSNDKQFV 151

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.8 bits (117), Expect = 6e-08
 Identities = 18/131 (13%), Positives = 42/131 (32%), Gaps = 10/131 (7%)

Query: 17  QDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSST 76
              H   +       + L++G       ++D+ T QC  +   P    +           
Sbjct: 213 LTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQS---AVTCLQFN 269

Query: 77  GGMYVTASKDGAIRLWDGVSANCVRSIVGAHG---TAEATSANFTKDQRFVLSCGKDST- 132
               +T+S DG ++LWD  +   +R++V                +  +       ++ T 
Sbjct: 270 KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTE 329

Query: 133 ---VKLWEVSS 140
              + + +   
Sbjct: 330 ETKLLVLDFDV 340

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.4 bits (116), Expect = 8e-08
 Identities = 25/169 (14%), Positives = 64/169 (37%), Gaps = 13/169 (7%)

Query: 20  HNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGM 79
           H  R  S    G  +++G+      ++DV T  C  +    +   +G            +
Sbjct: 176 HTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSG------MELKDNI 229

Query: 80  YVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVS 139
            V+ + D  +++WD +        +      ++       ++ FV++   D TVKLW++ 
Sbjct: 230 LVSGNADSTVKIWD-IKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLK 288

Query: 140 SGRLVKQYLGAT---HTQLRFQAVFNDTEEFVLSIDE---PSNEIVIWD 182
           +G  ++  +         + ++   ++T+              ++++ D
Sbjct: 289 TGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLD 337

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.1 bits (84), Expect = 0.001
 Identities = 15/72 (20%), Positives = 29/72 (40%), Gaps = 5/72 (6%)

Query: 92  WDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGAT 151
           W        + + G H     T   F      ++S   D+T+K+W   +G+ ++  +G  
Sbjct: 1   WRRGELKSPKVLKG-HDDHVITCLQF--CGNRIVSGSDDNTLKVWSAVTGKCLRTLVG-- 55

Query: 152 HTQLRFQAVFND 163
           HT   + +   D
Sbjct: 56  HTGGVWSSQMRD 67

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 47.3 bits (111), Expect = 5e-07
 Identities = 25/152 (16%), Positives = 47/152 (30%), Gaps = 12/152 (7%)

Query: 79  MYVTASKDGAIRLWDGVSANCVRSI---VGAHGTAEATSANFTKDQRFVLSCGKDSTVKL 135
             VT    G I L DG S   V+ I      H +        +   R++L  G+D+ + +
Sbjct: 34  FSVTLRDAGQIALVDGDSKKIVKVIDTGYAVHISR------MSASGRYLLVIGRDARIDM 87

Query: 136 WEVSSGRLVKQY---LGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKW 192
            ++ +    K     +G     +         + + ++      +  I D  T E     
Sbjct: 88  IDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIV 147

Query: 193 SSNHIGAPRWIEHSPAEAAFITCGTDRSVRFW 224
           S+  +       H     A I    +      
Sbjct: 148 STRGMTVDTQTYHPEPRVAAIIASHEHPEFIV 179

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 47.1 bits (111), Expect = 5e-07
 Identities = 18/121 (14%), Positives = 40/121 (33%), Gaps = 6/121 (4%)

Query: 79  MYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEV 138
             VT    G I L DG +      +   +    +     +   R++   G+D  V + ++
Sbjct: 34  FSVTLRDAGQIALIDGSTYEIKTVLDTGYAVHISR---LSASGRYLFVIGRDGKVNMIDL 90

Query: 139 SSGRLVKQY---LGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSN 195
                       +G+    +    +    +++ ++      + VI D  T E     S+ 
Sbjct: 91  WMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTR 150

Query: 196 H 196
            
Sbjct: 151 G 151

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 35.9 bits (82), Expect = 0.003
 Identities = 28/194 (14%), Positives = 64/194 (32%), Gaps = 20/194 (10%)

Query: 45  LYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANC--VRS 102
           L D +T++         +    A++  R S++G       +DG + + D        V  
Sbjct: 46  LIDGSTYEI-----KTVLDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAE 100

Query: 103 I-VGAHGTAEATSANFTKDQRFVL-SCGKDSTVKLWEVSSGRLVKQY--------LGATH 152
           I +G+   +  TS     + ++ +          + +  +    K              H
Sbjct: 101 IKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYH 160

Query: 153 TQLRFQAVF--NDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEA 210
            + R  A+   +   EF++++ E + +I++ D      +     +            +  
Sbjct: 161 PEPRVAAILASHYRPEFIVNVKE-TGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHR 219

Query: 211 AFITCGTDRSVRFW 224
            FIT    R+    
Sbjct: 220 YFITAANARNKLVV 233

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 47.2 bits (110), Expect = 5e-07
 Identities = 12/94 (12%), Positives = 36/94 (38%), Gaps = 1/94 (1%)

Query: 44  HLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSI 103
           +  D      +   ++  ++ +G++  + +S  G    +AS D  I++W+  +    ++I
Sbjct: 217 NGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTI 276

Query: 104 VGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWE 137
                  E         ++ ++S   +  +    
Sbjct: 277 PV-GTRIEDQQLGIIWTKQALVSISANGFINFVN 309

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 38.3 bits (87), Expect = 4e-04
 Identities = 11/67 (16%), Positives = 26/67 (38%), Gaps = 2/67 (2%)

Query: 116 NFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPS 175
            ++ D   + S   D T+K+W V++ ++ K     T  + +   +    +  V      +
Sbjct: 245 TWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISA--N 302

Query: 176 NEIVIWD 182
             I   +
Sbjct: 303 GFINFVN 309

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.4 bits (108), Expect = 8e-07
 Identities = 10/94 (10%), Positives = 26/94 (27%), Gaps = 2/94 (2%)

Query: 43  AHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRS 102
           A              +      +  ++ +         + +  +    +++  S   V +
Sbjct: 259 AAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHA 318

Query: 103 IVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLW 136
            +      +  S NF   +  V +  KD    L 
Sbjct: 319 NILKD-ADQIWSVNFK-GKTLVAAVEKDGQSFLE 350

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.4 bits (95), Expect = 5e-05
 Identities = 25/133 (18%), Positives = 56/133 (42%), Gaps = 5/133 (3%)

Query: 26  SFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASK 85
                 ++++ G D  +  +YD    +  L  +  +    G +  ++Y+  GG+ V+ S 
Sbjct: 18  CLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHD----GGVWALKYAH-GGILVSGST 72

Query: 86  DGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVK 145
           D  +R+WD     C     G + T         K+ +++++  +D+T+ +W++     V 
Sbjct: 73  DRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVP 132

Query: 146 QYLGATHTQLRFQ 158
            +       L F 
Sbjct: 133 DHGEEHDYPLVFH 145

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.9 bits (91), Expect = 1e-04
 Identities = 13/109 (11%), Positives = 32/109 (29%), Gaps = 3/109 (2%)

Query: 117 FTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSN 176
              +  +V++   D  +++++  + + + Q  G  H    +   +      ++S      
Sbjct: 19  LQFEDNYVITGADDKMIRVYDSINKKFLLQLSG--HDGGVWALKYAH-GGILVSGSTDRT 75

Query: 177 EIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWK 225
             V               N       I         +T   D ++  WK
Sbjct: 76  VRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWK 124

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.8 bits (83), Expect = 0.002
 Identities = 12/77 (15%), Positives = 32/77 (41%), Gaps = 5/77 (6%)

Query: 17  QDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSST 76
             T+     +F+ S + L++G+++   ++Y++ + +   +  + +      I  V +   
Sbjct: 280 HHTNLSAITTFYVSDNILVSGSENQF-NIYNLRSGKLVHANILKD---ADQIWSVNFKG- 334

Query: 77  GGMYVTASKDGAIRLWD 93
             +     KDG   L  
Sbjct: 335 KTLVAAVEKDGQSFLEI 351

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.4 bits (82), Expect = 0.002
 Identities = 13/123 (10%), Positives = 32/123 (26%), Gaps = 4/123 (3%)

Query: 74  SSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTV 133
                  +T + D  IR++D ++   +  + G H      +  +      V      +  
Sbjct: 20  QFEDNYVITGADDKMIRVYDSINKKFLLQLSG-H-DGGVWALKYAHGGILVSGSTDRTVR 77

Query: 134 KLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWS 193
                            +  +      + + +  V    +  N + +W       V    
Sbjct: 78  VWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRD--NTLHVWKLPKESSVPDHG 135

Query: 194 SNH 196
             H
Sbjct: 136 EEH 138

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.4 bits (108), Expect = 9e-07
 Identities = 18/123 (14%), Positives = 32/123 (26%), Gaps = 1/123 (0%)

Query: 17  QDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSST 76
           +    VR V F P     +                  +L     +               
Sbjct: 203 KQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLD 262

Query: 77  GGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFT-KDQRFVLSCGKDSTVKL 135
              + T   D  IR+WD  ++ CV+                       ++S   D T+  
Sbjct: 263 SQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNF 322

Query: 136 WEV 138
           +E+
Sbjct: 323 YEL 325

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.3 bits (92), Expect = 8e-05
 Identities = 10/64 (15%), Positives = 29/64 (45%), Gaps = 2/64 (3%)

Query: 120 DQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQ-AVFNDTEEFVLSIDEPSNEI 178
           D +   + G D+T+++W+V++ + V+++          Q  V       ++S+      +
Sbjct: 262 DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSL-DGTL 320

Query: 179 VIWD 182
             ++
Sbjct: 321 NFYE 324

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.0 bits (107), Expect = 1e-06
 Identities = 24/147 (16%), Positives = 49/147 (33%), Gaps = 15/147 (10%)

Query: 84  SKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRL 143
           S D  I++W+  +   VR++ G         A      R V+S   D+T++LW++  G  
Sbjct: 155 SGDRTIKVWNTSTCEFVRTLNGHKRG----IACLQYRDRLVVSGSSDNTIRLWDIECGAC 210

Query: 144 VKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHI-----G 198
           ++   G               +   +       +I +WD + A      +          
Sbjct: 211 LRVLEGHEELV-----RCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVE 265

Query: 199 APRWIEH-SPAEAAFITCGTDRSVRFW 224
               +      E   ++   D ++  W
Sbjct: 266 HSGRVFRLQFDEFQIVSSSHDDTILIW 292

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.2 bits (92), Expect = 9e-05
 Identities = 22/118 (18%), Positives = 42/118 (35%), Gaps = 15/118 (12%)

Query: 27  FHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKD 86
                  +++G+      L+D+    C       E  V       +        V+ + D
Sbjct: 184 LQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKR------IVSGAYD 237

Query: 87  GAIRLWDGVSANCVRSIVGAHG-------TAEATSANFTKDQRFVLSCGKDSTVKLWE 137
           G I++WD V+A   R+  G          +       F  D+  ++S   D T+ +W+
Sbjct: 238 GKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWD 293

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.6 bits (80), Expect = 0.003
 Identities = 16/151 (10%), Positives = 37/151 (24%), Gaps = 9/151 (5%)

Query: 74  SSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTV 133
                  V+  +D  I++WD  +  C R + G  G+      +                 
Sbjct: 22  QYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWD 81

Query: 134 KLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWS 193
                         +  T        +       ++        I +WD  +   +    
Sbjct: 82  VNT---------GEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRR 132

Query: 194 SNHIGAPRWIEHSPAEAAFITCGTDRSVRFW 224
                          +   ++   DR+++ W
Sbjct: 133 VLVGHRAAVNVVDFDDKYIVSASGDRTIKVW 163

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.7 bits (106), Expect = 1e-06
 Identities = 13/65 (20%), Positives = 22/65 (33%), Gaps = 2/65 (3%)

Query: 74  SSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTV 133
                +  T S D  I ++       +   + AH      +  +      V S G D+ +
Sbjct: 224 EIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAH-KDGVNNLLWETPSTLV-SSGADACI 281

Query: 134 KLWEV 138
           K W V
Sbjct: 282 KRWNV 286

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 45.6 bits (106), Expect = 2e-06
 Identities = 16/147 (10%), Positives = 36/147 (24%), Gaps = 9/147 (6%)

Query: 2   FDFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPE 61
            +FS     + F +     +       P      AG           +            
Sbjct: 210 LNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMI 269

Query: 62  ISVNGAINQVR---YSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFT 118
           I +  +I       +      Y  A + G +  +D  +                T    +
Sbjct: 270 IPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEV------KNNLTDLRLS 323

Query: 119 KDQRFVLSCGKDSTVKLWEVSSGRLVK 145
            D++ V+    D  +  + +      +
Sbjct: 324 ADRKTVMVRKDDGKIYTFPLEKPEDER 350

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 37.5 bits (85), Expect = 8e-04
 Identities = 11/86 (12%), Positives = 22/86 (25%), Gaps = 8/86 (9%)

Query: 18  DTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTG 77
                          +     +  +   YDV T +           V   +  +R S+  
Sbjct: 275 SILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKV--------TEVKNNLTDLRLSADR 326

Query: 78  GMYVTASKDGAIRLWDGVSANCVRSI 103
              +    DG I  +        R++
Sbjct: 327 KTVMVRKDDGKIYTFPLEKPEDERTV 352

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 44.0 bits (102), Expect = 5e-06
 Identities = 13/158 (8%), Positives = 40/158 (25%), Gaps = 13/158 (8%)

Query: 80  YVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVL-SCGKDSTVKLWEV 138
            +  ++   + + D       + I  A               R    +  K  ++   ++
Sbjct: 4   ILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDL 63

Query: 139 SSGRLVKQYLGAT---HTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDAL---------TA 186
            +G  + +   +T     +  F A  +   + +   + P    +    +           
Sbjct: 64  VTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAE 123

Query: 187 EKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFW 224
               + +         +  +   +     G D  V   
Sbjct: 124 TLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDP 161

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 40.9 bits (94), Expect = 6e-05
 Identities = 11/130 (8%), Positives = 26/130 (20%), Gaps = 8/130 (6%)

Query: 17  QDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSST 76
                    +     D              D+ T +  +                  +  
Sbjct: 195 SGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDV-----FYFSTAVN 249

Query: 77  GGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLW 136
                       +  +D      ++ +   H      S N + D   V   G    +  +
Sbjct: 250 PAKTRAFGAYNVLESFDLEKNASIKRVPLPHS---YYSVNVSTDGSTVWLGGALGDLAAY 306

Query: 137 EVSSGRLVKQ 146
           +  +     Q
Sbjct: 307 DAETLEKKGQ 316

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 39.0 bits (89), Expect = 2e-04
 Identities = 14/112 (12%), Positives = 33/112 (29%), Gaps = 9/112 (8%)

Query: 11  RAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQ 70
               V        S + +P+         + +   +D+          +  + +  +   
Sbjct: 232 AMREVRIMDVFYFSTAVNPAKTRA--FGAYNVLESFDLEKNAS-----IKRVPLPHSYYS 284

Query: 71  VRYSSTGGMYVTASKDGAIRLWDGVSANCVRSI--VGAHGTAEATSANFTKD 120
           V  S+ G         G +  +D  +      +   G    + A+   FT+D
Sbjct: 285 VNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLPGNASMSLASVRLFTRD 336

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.1 bits (102), Expect = 7e-06
 Identities = 25/222 (11%), Positives = 56/222 (25%), Gaps = 34/222 (15%)

Query: 22  VRSVSFHPSGDFLLAGTDHPI-AHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMY 80
             SV     G       +  +               +    I+ + +I  V++S  G + 
Sbjct: 187 ATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLL 246

Query: 81  VTASKDGAIRLWDGVSANCVRSI--------------VGAHGTAEATSANFTKDQRFVLS 126
             A    +              I                   ++   S +F      + S
Sbjct: 247 AIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCS 306

Query: 127 CGKDSTVKLWEVSSGRLVKQYLGATH--TQLRFQAVFNDTEEFVLSIDEPSNEIVIWDAL 184
            G D  ++ W+V +   +                   ++  + +           ++D  
Sbjct: 307 AGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPG-------VFD-- 357

Query: 185 TAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKE 226
               V           R    +    +      DRS+R+++E
Sbjct: 358 ----VKFLKKGW----RSGMGADLNESLCCVCLDRSIRWFRE 391

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.9 bits (99), Expect = 1e-05
 Identities = 12/93 (12%), Positives = 27/93 (29%), Gaps = 11/93 (11%)

Query: 74  SSTGGMYVTASKDGAIRLWDG-----------VSANCVRSIVGAHGTAEATSANFTKDQR 122
           S+     V+ S DG +++WD              ++ V      H            +  
Sbjct: 21  SACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELC 80

Query: 123 FVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQL 155
            V +      +  + ++     K+ +      L
Sbjct: 81  LVATTSFSGDLLFYRITREDETKKVIFEKLDLL 113

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 42.8 bits (99), Expect = 1e-05
 Identities = 13/158 (8%), Positives = 42/158 (26%), Gaps = 8/158 (5%)

Query: 74  SSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVL-SCGKDST 132
            +     +  +    + + D  S    +S V         +A    D R           
Sbjct: 5   KAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKF-GPGTAMMAPDNRTAYVLNNHYGD 63

Query: 133 VKLWEVSSGRLVKQYLGAT----HTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEK 188
           +   ++ + +       ++      +  +    +   + V +   P+  +     +   +
Sbjct: 64  IYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPR 123

Query: 189 VAKW--SSNHIGAPRWIEHSPAEAAFITCGTDRSVRFW 224
           +  +  +      P      P +   +    D S+   
Sbjct: 124 LEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVA 161

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 41.6 bits (96), Expect = 4e-05
 Identities = 11/128 (8%), Positives = 28/128 (21%), Gaps = 7/128 (5%)

Query: 19  THNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGG 78
           +       F                   D+ T + +        +    +      S   
Sbjct: 208 SMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEF----ADLTELYFTGLRSPKD 263

Query: 79  MYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEV 138
                     +  +D      +++    H         F K    +   G  + + ++  
Sbjct: 264 PNQIYGVLNRLAKYDLKQRKLIKAANLDHT---YYCVAFDKKGDKLYLGGTFNDLAVFNP 320

Query: 139 SSGRLVKQ 146
            +   VK 
Sbjct: 321 DTLEKVKN 328

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.4 bits (95), Expect = 5e-05
 Identities = 12/70 (17%), Positives = 22/70 (31%), Gaps = 3/70 (4%)

Query: 69  NQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCG 128
           N + +S       TA  DG I  W+  +   +++    +   E +          +    
Sbjct: 255 NSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFN---EDSVVKIACSDNILCLAT 311

Query: 129 KDSTVKLWEV 138
            D T K    
Sbjct: 312 SDDTFKTNAA 321

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.6 bits (93), Expect = 8e-05
 Identities = 7/63 (11%), Positives = 22/63 (34%), Gaps = 1/63 (1%)

Query: 67  AINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHG-TAEATSANFTKDQRFVL 125
            I+ ++   +  + +  S DG++ ++          ++ +          NF  +    +
Sbjct: 13  YISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQI 72

Query: 126 SCG 128
             G
Sbjct: 73  YVG 75

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.7 bits (88), Expect = 3e-04
 Identities = 14/155 (9%), Positives = 40/155 (25%), Gaps = 13/155 (8%)

Query: 8   TAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGA 67
            A +           +  +   +   L+ G ++     + +   +               
Sbjct: 137 IAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQI 196

Query: 68  INQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIV-------------GAHGTAEATS 114
            +          Y  +S DG + +          +                 +      S
Sbjct: 197 RDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNS 256

Query: 115 ANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLG 149
             F+   +F+ + G D  +  W + + + +K +  
Sbjct: 257 IEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAK 291

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.5 bits (85), Expect = 9e-04
 Identities = 11/113 (9%), Positives = 30/113 (26%), Gaps = 1/113 (0%)

Query: 113 TSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLG-ATHTQLRFQAVFNDTEEFVLSI 171
           +       +  +L    D ++ +++          L    +        F D  +  + +
Sbjct: 15  SDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYV 74

Query: 172 DEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFW 224
                EI+  D + +      ++N             +   I    D  +   
Sbjct: 75  GTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVI 127

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 35.6 bits (80), Expect = 0.003
 Identities = 5/60 (8%), Positives = 17/60 (28%), Gaps = 1/60 (1%)

Query: 22 VRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYV 81
          +  +   PS   LL  +      +Y  +     +   +  +     +    +     + +
Sbjct: 14 ISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDL-LQSLRYKHPLLCCNFIDNTDLQI 72

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 39.0 bits (89), Expect = 3e-04
 Identities = 9/74 (12%), Positives = 22/74 (29%), Gaps = 5/74 (6%)

Query: 74  SSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKD--QRFVLSCGKDS 131
                 +   +    + + D  +   +      H      S N ++D           D 
Sbjct: 267 VDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHE---IDSINVSQDEKPLLYALSTGDK 323

Query: 132 TVKLWEVSSGRLVK 145
           T+ + +  SG  ++
Sbjct: 324 TLYIHDAESGEELR 337

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 35.9 bits (81), Expect = 0.003
 Identities = 14/93 (15%), Positives = 28/93 (30%), Gaps = 7/93 (7%)

Query: 15  VIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYS 74
           V       R        D     T      + D  T +      + +  +   I+ +  S
Sbjct: 254 VAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGER-----LAKFEMGHEIDSINVS 308

Query: 75  STGG--MYVTASKDGAIRLWDGVSANCVRSIVG 105
                 +Y  ++ D  + + D  S   +RS+  
Sbjct: 309 QDEKPLLYALSTGDKTLYIHDAESGEELRSVNQ 341

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 37.9 bits (86), Expect = 6e-04
 Identities = 10/69 (14%), Positives = 23/69 (33%), Gaps = 4/69 (5%)

Query: 80  YVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVL-SCGKDSTVKLWEV 138
           Y+  S+   I + D  S     +I           A  + D   V  +    + V + + 
Sbjct: 5   YIANSESDNISVIDVTSNKVTATIPVGSN---PMGAVISPDGTKVYVANAHSNDVSIIDT 61

Query: 139 SSGRLVKQY 147
           ++  ++   
Sbjct: 62  ATNNVIATV 70

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	228
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	100.0
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	100.0
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.97
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.97
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.97
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.97
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.97
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.96
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.96
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.95
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.95
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.94
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.94
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.93
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.92
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.92
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.92
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.92
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.92
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.89
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.88
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.86
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.83
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.83
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.8
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.77
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.73
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.7
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.68
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.61
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.55
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.49
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.48
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.46
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.45
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.44
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.42
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	99.4
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.38
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.37
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.35
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.34
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.32
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.26
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.15
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	99.13
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	99.1
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.08
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	99.04
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	99.02
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.95
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.88
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.84
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	98.77
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	98.46
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.35
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	97.98
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	97.88
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	97.81
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	97.73
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	97.72
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	97.72
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.69
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	97.63
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.57
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	97.49
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	97.45
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	97.44
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.32
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	97.28
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	97.28
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.21
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	97.12
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	96.9
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	96.78
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	96.78
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	96.39
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	96.35
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	96.32
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	95.62
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	95.08
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	94.56
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	94.45
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	94.23
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	93.93
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	92.19
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	91.9

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.9e-41  Score=247.57  Aligned_cols=208  Identities=12%  Similarity=0.211  Sum_probs=176.5

Q ss_pred             ceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeE
Q 040370           10 KRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAI   89 (228)
Q Consensus        10 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v   89 (228)
                      +....+.+|.++|++++|+|++++||+|+.||.|+|||+.+++.+..+..+    ...|.+++|+|+++++++|+.|+.+
T Consensus        46 ~~~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~----~~~v~~v~~~~~~~~l~~~~~d~~i  121 (340)
T d1tbga_          46 RTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLR----SSWVMTCAYAPSGNYVACGGLDNIC  121 (340)
T ss_dssp             CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECS----CSCEEEEEECTTSSEEEEEETTCCE
T ss_pred             eeeEEECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEEecc----cccEEeeEeeccceeeeeeccccee
Confidence            344556789999999999999999999999999999999999877665432    6778888888888777777777777


Q ss_pred             EEEeC---------------------------------------------------------------------------
Q 040370           90 RLWDG---------------------------------------------------------------------------   94 (228)
Q Consensus        90 ~iwd~---------------------------------------------------------------------------   94 (228)
                      ++|+.                                                                           
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (340)
T d1tbga_         122 SIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVS  201 (340)
T ss_dssp             EEEESSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred             ecccccccccccccceecccccccccccccccccccccccccccccccccccccccccccccceeEeeeccccccceeEE
Confidence            77663                                                                           


Q ss_pred             ------------CCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEEC
Q 040370           95 ------------VSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFN  162 (228)
Q Consensus        95 ------------~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~  162 (228)
                                  ++++.+..+..|  ...|.+++|+|++++|++|+.|+.|++||++..+....+....+...+..+.|+
T Consensus       202 ~~~d~~v~i~d~~~~~~~~~~~~h--~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s  279 (340)
T d1tbga_         202 GACDASAKLWDVREGMCRQTFTGH--ESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFS  279 (340)
T ss_dssp             EETTTEEEEEETTTTEEEEEECCC--SSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEEC
T ss_pred             eecCceEEEEECCCCcEEEEEeCC--CCCeEEEEECCCCCEEEEEeCCCeEEEEeecccccccccccccccCceEEEEEC
Confidence                        333333333332  668999999999999999999999999999999888877666677788999999


Q ss_pred             CCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEee
Q 040370          163 DTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWK  225 (228)
Q Consensus       163 ~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd  225 (228)
                      |++.++++++. ||.|++||+.+++.+..+ .+|.++|++++|+|++++|+||+.||.|+|||
T Consensus       280 ~~~~~l~~g~~-dg~i~iwd~~~~~~~~~~-~~H~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         280 KSGRLLLAGYD-DFNCNVWDALKADRAGVL-AGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             SSSCEEEEEET-TSCEEEEETTTCCEEEEE-CCCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             CCCCEEEEEEC-CCEEEEEECCCCcEEEEE-cCCCCCEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence            99999988666 799999999999999888 78999999999999999999999999999997

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=8.7e-41  Score=242.28  Aligned_cols=218  Identities=15%  Similarity=0.293  Sum_probs=183.5

Q ss_pred             CCcCCccccceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeE
Q 040370            1 FFDFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMY   80 (228)
Q Consensus         1 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l   80 (228)
                      +||+.......  .+.+|...|++++|+|++++||+|+.||.|++||+.+++....... ..| .++|.+++|+|+++++
T Consensus        42 i~~~~~~~~~~--~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~-~~~-~~~v~~v~~s~d~~~l  117 (311)
T d1nr0a1          42 TVPVGSLTDTE--IYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTI-PVF-SGPVKDISWDSESKRI  117 (311)
T ss_dssp             EEETTCSSCCE--EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEE-ECS-SSCEEEEEECTTSCEE
T ss_pred             EEECCCCceeE--EEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeecccccccccc-ccc-cCcccccccccccccc
Confidence            36666443333  3468999999999999999999999999999999988764332221 223 7899999999999999


Q ss_pred             EEEec--CCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCE-EEEeeCCCeEEEEEccCCeeEEEEecceeeeeee
Q 040370           81 VTASK--DGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRF-VLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRF  157 (228)
Q Consensus        81 ~~~~~--dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~  157 (228)
                      ++++.  +..+++|++++++....+..|  ...|.+++|+|++++ +++|+.|+.|++||+++++....+..  +...+.
T Consensus       118 ~~~~~~~~~~~~v~~~~~~~~~~~l~~h--~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~--~~~~i~  193 (311)
T d1nr0a1         118 AAVGEGRERFGHVFLFDTGTSNGNLTGQ--ARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGE--HTKFVH  193 (311)
T ss_dssp             EEEECCSSCSEEEEETTTCCBCBCCCCC--SSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECC--CSSCEE
T ss_pred             cccccccccccccccccccccccccccc--ccccccccccccceeeeccccccccccccccccccccccccc--cccccc
Confidence            99886  456999999999888887765  678999999999885 78899999999999999988888766  677889


Q ss_pred             EEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEee------cCCCCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370          158 QAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWS------SNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEI  227 (228)
Q Consensus       158 ~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~------~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~  227 (228)
                      ++.++|+++++++++. |+.+++||.+++.....+.      .+|...|.+++|+|++++|++|+.||.|+|||+.
T Consensus       194 ~v~~~p~~~~l~~~~~-d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~  268 (311)
T d1nr0a1         194 SVRYNPDGSLFASTGG-DGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVA  268 (311)
T ss_dssp             EEEECTTSSEEEEEET-TSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred             ccccCccccccccccc-cccccccccccccccccccccccccccccccccccccCCCCCEEEEEeCCCeEEEEECC
Confidence            9999999999888666 8999999999988776653      3588999999999999999999999999999963

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=3.5e-39  Score=232.82  Aligned_cols=212  Identities=18%  Similarity=0.359  Sum_probs=174.9

Q ss_pred             ccceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccce--------------------------
Q 040370            8 TAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPE--------------------------   61 (228)
Q Consensus         8 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~--------------------------   61 (228)
                      ...+...+.+|.++|++++|+|++++|++|+.||+|+|||+++++....+..+.                          
T Consensus         6 ~~~~~~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~   85 (317)
T d1vyhc1           6 RPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKL   85 (317)
T ss_dssp             CSSCSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCE
T ss_pred             CCCccEEEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeeccccccccccccccccc
Confidence            344556778999999999999999999999999999999987765433221100                          


Q ss_pred             ------------------------------------------------------eeeccceeeEEeCCCCCeEEEEecCC
Q 040370           62 ------------------------------------------------------ISVNGAINQVRYSSTGGMYVTASKDG   87 (228)
Q Consensus        62 ------------------------------------------------------~~~~~~i~~~~~~~~~~~l~~~~~dg   87 (228)
                                                                            ..|...+.+++|+|++++|++++.|+
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~  165 (317)
T d1vyhc1          86 WDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQ  165 (317)
T ss_dssp             EETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             ccccccccccccccccccceeeeccCCCceEEeeccCcceeEeecccceeeeEEccCCCcceeeecccCCCEEEEEeCCC
Confidence                                                                  01244566777777777777777788


Q ss_pred             eEEEEeCCCCceeeEEecccccceeEEEEECCCC--------------------CEEEEeeCCCeEEEEEccCCeeEEEE
Q 040370           88 AIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQ--------------------RFVLSCGKDSTVKLWEVSSGRLVKQY  147 (228)
Q Consensus        88 ~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~--------------------~~l~~~~~d~~i~~wd~~~~~~~~~~  147 (228)
                      .|++|++.+++....+..+  ...+.++.|+|++                    ..+++++.|+.|++||+++++.+..+
T Consensus       166 ~v~~~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~  243 (317)
T d1vyhc1         166 TVRVWVVATKECKAELREH--RHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTL  243 (317)
T ss_dssp             CEEEEETTTCCEEEEECCC--SSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred             eEEEEeeccceeeEEEecC--CCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEE
Confidence            8888887777777766654  5678888887753                    46899999999999999999999988


Q ss_pred             ecceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEee
Q 040370          148 LGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWK  225 (228)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd  225 (228)
                      .+  +...+..+.++|++.++++++. ||.|++||+++++.+..+ .+|.++|++++|+|++++|++|+.||.|+|||
T Consensus       244 ~~--~~~~v~~~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~-~~h~~~V~~~~~s~~~~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         244 VG--HDNWVRGVLFHSGGKFILSCAD-DKTLRVWDYKNKRCMKTL-NAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             EC--CSSCEEEEEECSSSSCEEEEET-TTEEEEECCTTSCCCEEE-ECCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred             eC--CCCCEEEEEECCCCCEEEEEEC-CCeEEEEECCCCcEEEEE-cCCCCCEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence            77  6678899999999999988766 799999999999998888 78999999999999999999999999999997

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2e-38  Score=232.24  Aligned_cols=214  Identities=12%  Similarity=0.145  Sum_probs=187.1

Q ss_pred             CCcCCccccceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeE
Q 040370            1 FFDFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMY   80 (228)
Q Consensus         1 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l   80 (228)
                      |||+.....+....+..|...+.+++|+|++.++++++.|+.|++|++.+++.......+    ...|.+++|+++++.+
T Consensus       123 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~----~~~v~~l~~s~~~~~~  198 (337)
T d1gxra_         123 IWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGH----TDGASCIDISNDGTKL  198 (337)
T ss_dssp             EEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCC----SSCEEEEEECTTSSEE
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc----cccccccccccccccc
Confidence            588776666666677789999999999999999999999999999999998876554432    7789999999999999


Q ss_pred             EEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEE
Q 040370           81 VTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAV  160 (228)
Q Consensus        81 ~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~  160 (228)
                      ++++.|+.+++||+++++.+..+..   ...|.+++|+|+++++++++.|+.+++||+++++.....   .+...+..+.
T Consensus       199 ~~~~~d~~v~i~d~~~~~~~~~~~~---~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~---~~~~~i~~v~  272 (337)
T d1gxra_         199 WTGGLDNTVRSWDLREGRQLQQHDF---TSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLH---LHESCVLSLK  272 (337)
T ss_dssp             EEEETTSEEEEEETTTTEEEEEEEC---SSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEEC---CCSSCEEEEE
T ss_pred             ccccccccccccccccceeeccccc---ccceEEEEEcccccccceecccccccccccccccccccc---ccccccceEE
Confidence            9999999999999999988776653   678999999999999999999999999999987765432   2677889999


Q ss_pred             ECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370          161 FNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEI  227 (228)
Q Consensus       161 ~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~  227 (228)
                      |+|+++++++++. |+.|++||..+++.+...  .|.+.|.+++|+|++++|++|+.||.|+|||+.
T Consensus       273 ~s~~g~~l~s~s~-Dg~i~iwd~~~~~~~~~~--~~~~~v~~~~~s~d~~~l~t~s~D~~I~vWdl~  336 (337)
T d1gxra_         273 FAYCGKWFVSTGK-DNLLNAWRTPYGASIFQS--KESSSVLSCDISVDDKYIVTGSGDKKATVYEVI  336 (337)
T ss_dssp             ECTTSSEEEEEET-TSEEEEEETTTCCEEEEE--ECSSCEEEEEECTTSCEEEEEETTSCEEEEEEE
T ss_pred             ECCCCCEEEEEeC-CCeEEEEECCCCCEEEEc--cCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEEE
Confidence            9999999888665 899999999999988776  588999999999999999999999999999985

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=2.6e-38  Score=229.19  Aligned_cols=219  Identities=14%  Similarity=0.187  Sum_probs=180.1

Q ss_pred             CCcCCccccceeEEEeecCcceEEEEEeCCCCEEEEecC--CCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCC
Q 040370            1 FFDFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTD--HPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGG   78 (228)
Q Consensus         1 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~   78 (228)
                      |||+..........+..|..+|.+++|+|++++|++++.  +..+++|++++++....+.   .| ...|++++|+|+++
T Consensus        84 iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~---~h-~~~v~~v~~~~~~~  159 (311)
T d1nr0a1          84 IWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLT---GQ-ARAMNSVDFKPSRP  159 (311)
T ss_dssp             EEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCC---CC-SSCEEEEEECSSSS
T ss_pred             eeeeeccccccccccccccCcccccccccccccccccccccccccccccccccccccccc---cc-ccccccccccccce
Confidence            588887665555667789999999999999999998875  4569999999887655443   23 78899999999988


Q ss_pred             e-EEEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecc-----ee
Q 040370           79 M-YVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGA-----TH  152 (228)
Q Consensus        79 ~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~-----~~  152 (228)
                      + +++|+.||.|++||+++++....+..+  ..+|.++.|+|+++++++++.|+.|++||+++++....+...     .|
T Consensus       160 ~~l~sgs~d~~i~i~d~~~~~~~~~~~~~--~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h  237 (311)
T d1nr0a1         160 FRIISGSDDNTVAIFEGPPFKFKSTFGEH--TKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAH  237 (311)
T ss_dssp             CEEEEEETTSCEEEEETTTBEEEEEECCC--SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSS
T ss_pred             eeecccccccccccccccccccccccccc--cccccccccCccccccccccccccccccccccccccccccccccccccc
Confidence            5 788999999999999999988888776  778999999999999999999999999999998877766432     25


Q ss_pred             eeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeee
Q 040370          153 TQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKE  226 (228)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~  226 (228)
                      ...+.+++|+|++.++++++. ||.|++||+++++.+..+...+......+.+.++++.|++++.||.|++||+
T Consensus       238 ~~~V~~~~~s~~~~~l~tgs~-Dg~v~iwd~~t~~~~~~l~~~~~~~~~~~~~~~~~~~l~s~s~dG~i~~wd~  310 (311)
T d1nr0a1         238 SGSVFGLTWSPDGTKIASASA-DKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNP  310 (311)
T ss_dssp             SSCEEEEEECTTSSEEEEEET-TSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEET
T ss_pred             cccccccccCCCCCEEEEEeC-CCeEEEEECCCCcEEEEEECCCCccceEEEEEecCCEEEEEECCCEEEEEeC
Confidence            667899999999999988665 8999999999999888874333323333444445668999999999999996

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.1e-37  Score=225.90  Aligned_cols=217  Identities=21%  Similarity=0.316  Sum_probs=183.3

Q ss_pred             CCcCCccccce---eEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCC
Q 040370            1 FFDFSKATAKR---AFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTG   77 (228)
Q Consensus         1 iwd~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~   77 (228)
                      |||+.......   .....+|...|.+++|+|++++|++|+.||.|++||+.......... .. .|...+.+++|+|++
T Consensus        76 iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~-~~~~~v~~~~~~~~~  153 (337)
T d1gxra_          76 VWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAE-LT-SSAPACYALAISPDS  153 (337)
T ss_dssp             EEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEE-EE-CSSSCEEEEEECTTS
T ss_pred             EEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeecccccccccccccccccccc-cc-ccccccccccccccc
Confidence            58887654433   23334789999999999999999999999999999987654322221 11 227789999999999


Q ss_pred             CeEEEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeee
Q 040370           78 GMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRF  157 (228)
Q Consensus        78 ~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~  157 (228)
                      .++++++.|+.|++||+++++.......+  ...+.+++|++++..+++++.|+.+++||+++++.+..+.   +...+.
T Consensus       154 ~~l~s~~~d~~i~~~~~~~~~~~~~~~~~--~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~---~~~~i~  228 (337)
T d1gxra_         154 KVCFSCCSDGNIAVWDLHNQTLVRQFQGH--TDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD---FTSQIF  228 (337)
T ss_dssp             SEEEEEETTSCEEEEETTTTEEEEEECCC--SSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE---CSSCEE
T ss_pred             ccccccccccccccccccccccccccccc--ccccccccccccccccccccccccccccccccceeecccc---cccceE
Confidence            99999999999999999999888777765  6789999999999999999999999999999998877665   566788


Q ss_pred             EEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370          158 QAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEI  227 (228)
Q Consensus       158 ~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~  227 (228)
                      ++.|+|++.++++++. |+.+++||+++++....  ..|...|.+++|+|++++|++++.||.|++||+.
T Consensus       229 ~l~~~~~~~~l~~~~~-d~~i~i~d~~~~~~~~~--~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~  295 (337)
T d1gxra_         229 SLGYCPTGEWLAVGME-SSNVEVLHVNKPDKYQL--HLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTP  295 (337)
T ss_dssp             EEEECTTSSEEEEEET-TSCEEEEETTSSCEEEE--CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred             EEEEcccccccceecc-ccccccccccccccccc--cccccccceEEECCCCCEEEEEeCCCeEEEEECC
Confidence            9999999999888666 79999999998887644  4799999999999999999999999999999964

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=3.1e-37  Score=228.67  Aligned_cols=206  Identities=9%  Similarity=0.045  Sum_probs=169.3

Q ss_pred             cCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCCC
Q 040370           18 DTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSA   97 (228)
Q Consensus        18 ~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~   97 (228)
                      ..++|+|++|+|++++||+|+.|+.|+|||+++++..... ...+| .++|++++|+|++++|++|+.|+.|++||++++
T Consensus         6 ~~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~-~l~gH-~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~   83 (371)
T d1k8kc_           6 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVH-ELKEH-NGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGR   83 (371)
T ss_dssp             CSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEE-EEECC-SSCEEEEEEETTTTEEEEEETTSCEEEEEEETT
T ss_pred             CCCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEE-EecCC-CCCEEEEEECCCCCEEEEEECCCeEEEEeeccc
Confidence            3578999999999999999999999999999887643322 22234 889999999999999999999999999999887


Q ss_pred             ceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEE--ecceeeeeeeEEEECCCCcEEEEeeCCC
Q 040370           98 NCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQY--LGATHTQLRFQAVFNDTEEFVLSIDEPS  175 (228)
Q Consensus        98 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~d  175 (228)
                      .....+....+...+.+++|+|+++.|++++.|+.+++|++.........  ....+...+.++.|+|++.++++++. |
T Consensus        84 ~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~-D  162 (371)
T d1k8kc_          84 TWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSC-D  162 (371)
T ss_dssp             EEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEET-T
T ss_pred             ccccccccccccccccccccccccccceeecccCcceeeeeecccccccccccccccccccccccccccccceecccc-C
Confidence            76655554444778999999999999999999999999998765543222  22335677889999999999877655 8


Q ss_pred             CeEEEEEcCCcc------------------eeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370          176 NEIVIWDALTAE------------------KVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEI  227 (228)
Q Consensus       176 ~~i~i~d~~~~~------------------~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~  227 (228)
                      +.+++||.....                  ..... ..|...|.+++|+|++++|++++.|+.|++||+.
T Consensus       163 ~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~  231 (371)
T d1k8kc_         163 FKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFES-SSSCGWVHGVCFSANGSRVAWVSHDSTVCLADAD  231 (371)
T ss_dssp             SCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEEC-CCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGG
T ss_pred             cEEEEEeeccCccccccccccccccccceeeeeec-cCccCcEEEEEeecccccccccccCCcceEEeee
Confidence            999999986432                  22232 5788999999999999999999999999999963

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=5.2e-37  Score=227.48  Aligned_cols=221  Identities=10%  Similarity=0.051  Sum_probs=177.5

Q ss_pred             CCcCCccccceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeE
Q 040370            1 FFDFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMY   80 (228)
Q Consensus         1 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l   80 (228)
                      |||.+..+......+.+|..+|++++|+|++++|++|+.|+.|+|||+.++......... .+ ...|.+++|+|+++.|
T Consensus        33 iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~-~~-~~~v~~i~~~p~~~~l  110 (371)
T d1k8kc_          33 IYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVIL-RI-NRAARCVRWAPNEKKF  110 (371)
T ss_dssp             EEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECC-CC-SSCEEEEEECTTSSEE
T ss_pred             EEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeecccccccccccc-cc-cccccccccccccccc
Confidence            577776555566667789999999999999999999999999999999987654443322 22 7889999999999999


Q ss_pred             EEEecCCeEEEEeCCCCceeeEE--ecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCee---------------
Q 040370           81 VTASKDGAIRLWDGVSANCVRSI--VGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRL---------------  143 (228)
Q Consensus        81 ~~~~~dg~v~iwd~~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~---------------  143 (228)
                      ++|+.|+.+++|+++........  ....+...|.+++|+|++++|++|+.|+.|++||+.....               
T Consensus       111 ~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~  190 (371)
T d1k8kc_         111 AVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPF  190 (371)
T ss_dssp             EEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCT
T ss_pred             eeecccCcceeeeeecccccccccccccccccccccccccccccceeccccCcEEEEEeeccCccccccccccccccccc
Confidence            99999999999998776543222  1222367899999999999999999999999999864321               


Q ss_pred             -EEEEecceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEE
Q 040370          144 -VKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVR  222 (228)
Q Consensus       144 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~  222 (228)
                       ........+...+..++|+|+++++++++. |+.|++||+.+++.+..+ ..|..+|.+++|+|++++|++|+ |+.++
T Consensus       191 ~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~-d~~i~iwd~~~~~~~~~~-~~~~~~v~s~~fs~d~~~la~g~-d~~~~  267 (371)
T d1k8kc_         191 GELMFESSSSCGWVHGVCFSANGSRVAWVSH-DSTVCLADADKKMAVATL-ASETLPLLAVTFITESSLVAAGH-DCFPV  267 (371)
T ss_dssp             TCEEEECCCCSSCEEEEEECSSSSEEEEEET-TTEEEEEEGGGTTEEEEE-ECSSCCEEEEEEEETTEEEEEET-TSSCE
T ss_pred             eeeeeeccCccCcEEEEEeeccccccccccc-CCcceEEeeecccceeee-ecccccceeeeecCCCCEEEEEc-CCceE
Confidence             112223336677889999999999887665 899999999999988887 68999999999999998887655 77777


Q ss_pred             Eeee
Q 040370          223 FWKE  226 (228)
Q Consensus       223 vwd~  226 (228)
                      +|..
T Consensus       268 ~~~~  271 (371)
T d1k8kc_         268 LFTY  271 (371)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            7653

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=4e-36  Score=216.25  Aligned_cols=213  Identities=13%  Similarity=0.162  Sum_probs=159.8

Q ss_pred             eEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccce------------------------------
Q 040370           12 AFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPE------------------------------   61 (228)
Q Consensus        12 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~------------------------------   61 (228)
                      ...+.+|..+|++++|+|++++|++|+.||.|++||+++++.........                              
T Consensus         5 ~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~~~~~~~d~~v~~~~~~   84 (299)
T d1nr0a2           5 DQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAG   84 (299)
T ss_dssp             EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSS
T ss_pred             ceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccceeecccceeeEEEeccC
Confidence            34556999999999999999999999999999999998766544321100                              


Q ss_pred             ------------------------------------------------eeeccceeeEEeCCCCCeEEEEecCCeEEEEe
Q 040370           62 ------------------------------------------------ISVNGAINQVRYSSTGGMYVTASKDGAIRLWD   93 (228)
Q Consensus        62 ------------------------------------------------~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd   93 (228)
                                                                      ......+.+++|+|+++++++|+.||.|++||
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~~~d  164 (299)
T d1nr0a2          85 GSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYK  164 (299)
T ss_dssp             SSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEE
T ss_pred             Cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence                                                            00012345566777777778888888888888


Q ss_pred             CCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEe-cceeeeeeeEEEECCCCcEEEEee
Q 040370           94 GVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYL-GATHTQLRFQAVFNDTEEFVLSID  172 (228)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  172 (228)
                      +++++........ +...|.+++|+|++++|++++.|+.|++||+.++....... ...|...+.+++|+|++.++++++
T Consensus       165 ~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs  243 (299)
T d1nr0a2         165 LSGASVSEVKTIV-HPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGS  243 (299)
T ss_dssp             EETTEEEEEEEEE-CSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEE
T ss_pred             ccccccccccccc-ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceEEEc
Confidence            8766544333222 26789999999999999999999999999998876554332 223667889999999999988866


Q ss_pred             CCCCeEEEEEcCCcceeEEee-cCC-CCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370          173 EPSNEIVIWDALTAEKVAKWS-SNH-IGAPRWIEHSPAEAAFITCGTDRSVRFWKEI  227 (228)
Q Consensus       173 ~~d~~i~i~d~~~~~~~~~~~-~~~-~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~  227 (228)
                      . |+.|++||++++....... ..| ...+.++.| +++++|++++.||.|++||+.
T Consensus       244 ~-dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~s~D~~i~iWdl~  298 (299)
T d1nr0a2         244 L-DNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIW-LNETTIVSAGQDSNIKFWNVP  298 (299)
T ss_dssp             T-TSCEEEEETTCTTSCCEEETTSSTTSCEEEEEE-EETTEEEEEETTSCEEEEECC
T ss_pred             C-CCEEEEEECCCCCcceEEEecCCCCCcEEEEEE-CCCCEEEEEeCCCEEEEEecc
Confidence            6 8999999998876443322 333 445666655 567899999999999999986

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.1e-35  Score=219.51  Aligned_cols=209  Identities=19%  Similarity=0.303  Sum_probs=172.1

Q ss_pred             eEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccce--------------eeeccceeeEEeCCCC
Q 040370           12 AFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPE--------------ISVNGAINQVRYSSTG   77 (228)
Q Consensus        12 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~--------------~~~~~~i~~~~~~~~~   77 (228)
                      ..+..+|.+.|+|++|+|+|++||+|+ |+.|+|||+.+++....+....              ..+...|++++|+|++
T Consensus        55 l~~~~~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~  133 (388)
T d1erja_          55 LHKSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDG  133 (388)
T ss_dssp             EEEEEECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTS
T ss_pred             eEeeCCCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCC
Confidence            345568999999999999999999987 8899999999887765543221              1236679999999999


Q ss_pred             CeEEEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeee
Q 040370           78 GMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRF  157 (228)
Q Consensus        78 ~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~  157 (228)
                      ++|++|+.||.|++||...++.......+  ...|.++.+++++..+++++.++.+++||.++.........  +.. ..
T Consensus       134 ~~l~s~~~dg~v~i~~~~~~~~~~~~~~h--~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~--~~~-~~  208 (388)
T d1erja_         134 KFLATGAEDRLIRIWDIENRKIVMILQGH--EQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSI--EDG-VT  208 (388)
T ss_dssp             SEEEEEETTSCEEEEETTTTEEEEEECCC--SSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEEC--SSC-EE
T ss_pred             Ccceecccccccccccccccccccccccc--cccccccccccccccccccccceeeeeeecccccccccccc--ccc-cc
Confidence            99999999999999999999988888776  77899999999999999999999999999998877766654  233 33


Q ss_pred             EEEECC-CCcEEEEeeCCCCeEEEEEcCCcceeEEee------cCCCCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370          158 QAVFND-TEEFVLSIDEPSNEIVIWDALTAEKVAKWS------SNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEI  227 (228)
Q Consensus       158 ~~~~~~-~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~------~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~  227 (228)
                      .+.+.+ ++.+++++ +.|+.|++||.+++.....+.      .+|...|.+++|+|++++|++++.||.|++||+.
T Consensus       209 ~~~~~~~~~~~l~~~-~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~  284 (388)
T d1erja_         209 TVAVSPGDGKYIAAG-SLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQ  284 (388)
T ss_dssp             EEEECSTTCCEEEEE-ETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred             cccccCCCCCeEEEE-cCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEecc
Confidence            444444 56666654 458999999999988766552      3688899999999999999999999999999974

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.1e-35  Score=221.09  Aligned_cols=206  Identities=22%  Similarity=0.382  Sum_probs=152.9

Q ss_pred             eecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEE------------
Q 040370           16 IQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTA------------   83 (228)
Q Consensus        16 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~------------   83 (228)
                      ..|...|++++|+|++++|++|+.||.|++|+...++.......+    ...|.++.|++++..++++            
T Consensus       118 ~~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h----~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~  193 (388)
T d1erja_         118 PSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGH----EQDIYSLDYFPSGDKLVSGSGDRTVRIWDLR  193 (388)
T ss_dssp             -CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCC----SSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred             cCCCCCEEEEEECCCCCcceecccccccccccccccccccccccc----cccccccccccccccccccccceeeeeeecc
Confidence            357788999999999999999999999999999988766554322    4555555555555444444            


Q ss_pred             ------------------------------ecCCeEEEEeCCCCceeeEEecc-----cccceeEEEEECCCCCEEEEee
Q 040370           84 ------------------------------SKDGAIRLWDGVSANCVRSIVGA-----HGTAEATSANFTKDQRFVLSCG  128 (228)
Q Consensus        84 ------------------------------~~dg~v~iwd~~~~~~~~~~~~~-----~~~~~i~~~~~~~~~~~l~~~~  128 (228)
                                                    +.||.|++||.+++.....+...     .+...|.+++|+|++++|++++
T Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~  273 (388)
T d1erja_         194 TGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGS  273 (388)
T ss_dssp             TTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEE
T ss_pred             ccccccccccccccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEE
Confidence                                          44455555554444443333211     1256799999999999999999


Q ss_pred             CCCeEEEEEccCCeeEEEE----------ecceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCC
Q 040370          129 KDSTVKLWEVSSGRLVKQY----------LGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIG  198 (228)
Q Consensus       129 ~d~~i~~wd~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~  198 (228)
                      .|+.|++||+++++.....          ....+...+.++.|+|+++++++++. ||.|++||+++++++..+ .+|.+
T Consensus       274 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~-dg~i~vwd~~~~~~~~~l-~~H~~  351 (388)
T d1erja_         274 LDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSK-DRGVLFWDKKSGNPLLML-QGHRN  351 (388)
T ss_dssp             TTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEET-TSEEEEEETTTCCEEEEE-ECCSS
T ss_pred             CCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeC-CCEEEEEECCCCcEEEEE-eCCCC
Confidence            9999999999876543221          11225567889999999999888666 899999999999999888 78999


Q ss_pred             CcEEEE------eCCCCcEEEEecCCCCEEEeeec
Q 040370          199 APRWIE------HSPAEAAFITCGTDRSVRFWKEI  227 (228)
Q Consensus       199 ~v~~~~------~~~~~~~l~s~~~dg~i~vwd~~  227 (228)
                      .|.+++      |+|++++|+||+.||+|+|||+.
T Consensus       352 ~V~~~~~~~~~~~spd~~~l~s~s~Dg~I~iW~~~  386 (388)
T d1erja_         352 SVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK  386 (388)
T ss_dssp             CEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred             CEEEEEEecCcccCCCCCEEEEEeCCCEEEEEeee
Confidence            999987      46789999999999999999974

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.2e-35  Score=214.14  Aligned_cols=223  Identities=13%  Similarity=0.175  Sum_probs=174.5

Q ss_pred             CcCCccccceeEEEeecC-cceEEEEEeC--CCCEEEEecCCCeEEEEEcccceEEeeeccc----eeeeccceeeEEeC
Q 040370            2 FDFSKATAKRAFRVIQDT-HNVRSVSFHP--SGDFLLAGTDHPIAHLYDVNTFQCYLSANVP----EISVNGAINQVRYS   74 (228)
Q Consensus         2 wd~~~~~~~~~~~~~~~~-~~v~~~~~~~--~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~----~~~~~~~i~~~~~~   74 (228)
                      ||...........+.+|. ..|++++|+|  ++.+|++|+.||+|+|||+..++........    ...+.++|.+++|+
T Consensus        45 ~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s  124 (325)
T d1pgua1          45 LDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWD  124 (325)
T ss_dssp             CCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEEC
T ss_pred             EeCCCCCccceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEEC
Confidence            344444445566667774 6899999998  5689999999999999999765422211111    11236789999999


Q ss_pred             CCCCeEEEEec--CCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCE-EEEeeCCCeEEEEEccCCeeEEEEec-c
Q 040370           75 STGGMYVTASK--DGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRF-VLSCGKDSTVKLWEVSSGRLVKQYLG-A  150 (228)
Q Consensus        75 ~~~~~l~~~~~--dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-l~~~~~d~~i~~wd~~~~~~~~~~~~-~  150 (228)
                      |+++++++++.  ++.+++|+.++++.+..+..|  ...|.+++|+|++++ +++++.|+.+++||++..+....... .
T Consensus       125 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h--~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~  202 (325)
T d1pgua1         125 FEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGH--SQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHH  202 (325)
T ss_dssp             TTSSEEEEEECCSSCSEEEEETTTCCEEEECCSC--SSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSS
T ss_pred             CCCCccceeeccccceEEEEeecccccceeeeec--ccccccccccccccceEEEeecccccccccccccccceeccccc
Confidence            99999887764  678999999999988888775  778999999998775 67899999999999988877666543 2


Q ss_pred             eeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeC---CCCcEEEEecCCCCEEEeeec
Q 040370          151 THTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHS---PAEAAFITCGTDRSVRFWKEI  227 (228)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~---~~~~~l~s~~~dg~i~vwd~~  227 (228)
                      .+...+.+++|+|++..++++++.|+.|++||+++++.+..+ .+|..++..+.|+   |++++|++++.|+.|+|||+.
T Consensus       203 ~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l-~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~  281 (325)
T d1pgua1         203 KQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYI-EDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVT  281 (325)
T ss_dssp             CTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEEC-CBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETT
T ss_pred             CCCCccEEeeeccccceeccccccccceeeeeeccccccccc-cccccccccceeeeeccCCCEEEEEeCCCeEEEEECC
Confidence            356678899999976544544555899999999999998887 5777777666555   689999999999999999964

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=8.6e-33  Score=201.23  Aligned_cols=204  Identities=15%  Similarity=0.219  Sum_probs=159.5

Q ss_pred             eecCcceEEEEEeCCCCEEEEec--CCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCe-EEEEecCCeEEEE
Q 040370           16 IQDTHNVRSVSFHPSGDFLLAGT--DHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGM-YVTASKDGAIRLW   92 (228)
Q Consensus        16 ~~~~~~v~~~~~~~~~~~l~~~~--~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-l~~~~~dg~v~iw   92 (228)
                      ..|..+|.+++|+|+++++++++  .++.+.+|+.++++....+..   | ...|.+++|+|+++. +++++.|+.+++|
T Consensus       112 ~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---h-~~~v~~~~~~~~~~~~~~~~~~d~~v~~~  187 (325)
T d1pgua1         112 QVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSG---H-SQRINACHLKQSRPMRSMTVGDDGSVVFY  187 (325)
T ss_dssp             ECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCS---C-SSCEEEEEECSSSSCEEEEEETTTEEEEE
T ss_pred             ccccCcEEEEEECCCCCccceeeccccceEEEEeecccccceeeee---c-ccccccccccccccceEEEeecccccccc
Confidence            45888999999999999988765  467899999999887766543   3 788999999998775 6789999999999


Q ss_pred             eCCCCceeeEEecc-cccceeEEEEECCC-CCEEEEeeCCCeEEEEEccCCeeEEEEecceeee--eeeEEEECCCCcEE
Q 040370           93 DGVSANCVRSIVGA-HGTAEATSANFTKD-QRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQ--LRFQAVFNDTEEFV  168 (228)
Q Consensus        93 d~~~~~~~~~~~~~-~~~~~i~~~~~~~~-~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~  168 (228)
                      |....+.......+ .+...|.+++|+|+ +.++++++.|+.|++||+++++.+..+.++....  .+.+..+ |++.++
T Consensus       188 d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~-~dg~~l  266 (325)
T d1pgua1         188 QGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSW-LDSQKF  266 (325)
T ss_dssp             ETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEE-SSSSEE
T ss_pred             cccccccceecccccCCCCccEEeeeccccceeccccccccceeeeeeccccccccccccccccccceeeeec-cCCCEE
Confidence            99888777666543 23667999999996 6889999999999999999999988887643221  2233333 677888


Q ss_pred             EEeeCCCCeEEEEEcCCcceeEEeecCCCC--CcEEEEeCCC-CcEEEEecCCCCEEEeee
Q 040370          169 LSIDEPSNEIVIWDALTAEKVAKWSSNHIG--APRWIEHSPA-EAAFITCGTDRSVRFWKE  226 (228)
Q Consensus       169 ~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~--~v~~~~~~~~-~~~l~s~~~dg~i~vwd~  226 (228)
                      ++++. |+.|++||+++++.+..+. .|..  .+..+++.+. +.+|++++.||.|++||+
T Consensus       267 ~s~s~-D~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         267 ATVGA-DATIRVWDVTTSKCVQKWT-LDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL  325 (325)
T ss_dssp             EEEET-TSEEEEEETTTTEEEEEEE-CCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEET
T ss_pred             EEEeC-CCeEEEEECCCCCEEEEEE-ecCCcccCeEEEEEECCCCEEEEEECCCEEEEEEC
Confidence            87665 8999999999999888773 3333  3444444432 347899999999999996

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.3e-32  Score=198.94  Aligned_cols=145  Identities=21%  Similarity=0.388  Sum_probs=110.0

Q ss_pred             CCCeEEEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecce-eee
Q 040370           76 TGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGAT-HTQ  154 (228)
Q Consensus        76 ~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~-~~~  154 (228)
                      ++.++++|+.||.|++||++.++.+..+..+  ...+.++.++  +++|++++.|+.|++||+...+....+..+. +..
T Consensus       186 ~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~--~~~v~~~~~~--~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~  261 (342)
T d2ovrb2         186 DGIHVVSGSLDTSIRVWDVETGNCIHTLTGH--QSLTSGMELK--DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQS  261 (342)
T ss_dssp             CSSEEEEEETTSCEEEEETTTCCEEEEECCC--CSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSS
T ss_pred             CCCEEEEEeCCCeEEEeecccceeeeEeccc--ccceeEEecC--CCEEEEEcCCCEEEEEecccccccccccccceeee
Confidence            4456667777777777777776666666554  5567777665  5689999999999999999888777775432 344


Q ss_pred             eeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEee----cCCCCCcEEEEeCCCCcEEEEecCCCC----EEEeee
Q 040370          155 LRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWS----SNHIGAPRWIEHSPAEAAFITCGTDRS----VRFWKE  226 (228)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~l~s~~~dg~----i~vwd~  226 (228)
                      .+.++.+  ++.++++++ .||.|++||+++++.+..+.    .+|.+.|++++|+|++.+|++|+.||+    |++||.
T Consensus       262 ~~~~~~~--~~~~~~s~s-~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~~~~la~g~~dGt~~~~l~~~Df  338 (342)
T d2ovrb2         262 AVTCLQF--NKNFVITSS-DDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDF  338 (342)
T ss_dssp             CEEEEEE--CSSEEEEEE-TTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEEC
T ss_pred             ceeeccc--CCCeeEEEc-CCCEEEEEECCCCCEEEEEecccCCCCCCCEEEEEECCCCCEEEEEeCCCCCeeEEEEEeC
Confidence            4555555  455666655 48999999999999887764    357788999999999999999999986    999996


Q ss_pred             c
Q 040370          227 I  227 (228)
Q Consensus       227 ~  227 (228)
                      .
T Consensus       339 ~  339 (342)
T d2ovrb2         339 D  339 (342)
T ss_dssp             C
T ss_pred             C
Confidence            4

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=5.3e-31  Score=192.55  Aligned_cols=205  Identities=19%  Similarity=0.399  Sum_probs=160.9

Q ss_pred             ceeEEEeecCcce-EEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCe
Q 040370           10 KRAFRVIQDTHNV-RSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGA   88 (228)
Q Consensus        10 ~~~~~~~~~~~~v-~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~   88 (228)
                      ++...+.+|...| +|++|  ++++|++|+.||+|+|||+.+++.+..+..   | .++|++++|+|+ ++|++|+.||.
T Consensus         3 p~~~tL~GH~~~vitc~~~--~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~---H-~~~V~~l~~s~~-~~l~s~s~D~~   75 (355)
T d1nexb2           3 PQRTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSG---H-DGGVWALKYAHG-GILVSGSTDRT   75 (355)
T ss_dssp             CEEEEEECCSSSCEEEEEE--ETTEEEEEETTTEEEEEETTTTEEEEEEEC---C-SSCEEEEEEETT-TEEEEEETTCC
T ss_pred             CCcEEECCcCCCcEEEEEE--CCCEEEEEeCCCeEEEEECCCCcEEEEEEC---C-CCCEEEEEEcCC-CEEEEEecccc
Confidence            3456677998875 66655  678999999999999999999988776643   3 889999999985 58999999999


Q ss_pred             EEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeE------------------------
Q 040370           89 IRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLV------------------------  144 (228)
Q Consensus        89 v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~------------------------  144 (228)
                      |++|+....+..................+.+++.++++++.|+.|++||+++....                        
T Consensus        76 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (355)
T d1nexb2          76 VRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVG  155 (355)
T ss_dssp             EEEEETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEE
T ss_pred             cccccccccccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceee
Confidence            99999998887776666554555566677778888888888888888887643211                        


Q ss_pred             ---------------------------------------EEEecceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCC
Q 040370          145 ---------------------------------------KQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALT  185 (228)
Q Consensus       145 ---------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~  185 (228)
                                                             .....  +........++|.+..+++++. |+.|++||.++
T Consensus       156 ~~~~~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-d~~i~i~d~~~  232 (355)
T d1nexb2         156 VLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSG--HTDRIYSTIYDHERKRCISASM-DTTIRIWDLEN  232 (355)
T ss_dssp             EEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECC--CSSCEEEEEEETTTTEEEEEET-TSCEEEEETTT
T ss_pred             eeeeccccccccccccceeeeecccceeeeeecccccceeeeec--cccccccccccccceeeecccc-cceEEeeeccc
Confidence                                                   11111  2233456778888888888665 79999999999


Q ss_pred             cceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370          186 AEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEI  227 (228)
Q Consensus       186 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~  227 (228)
                      +..+..+ .+|...|.++++++  ++|++++.||.|++||+.
T Consensus       233 ~~~~~~~-~~h~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~  271 (355)
T d1nexb2         233 GELMYTL-QGHTALVGLLRLSD--KFLVSAAADGSIRGWDAN  271 (355)
T ss_dssp             CCEEEEE-CCCSSCCCEEEECS--SEEEEECTTSEEEEEETT
T ss_pred             ccccccc-cccccccccccccc--ceeeeeeccccccccccc
Confidence            9998888 78999999999964  689999999999999964

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.9e-32  Score=194.87  Aligned_cols=151  Identities=12%  Similarity=0.197  Sum_probs=110.8

Q ss_pred             eCCCCCeEEEEecCC-eEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecce
Q 040370           73 YSSTGGMYVTASKDG-AIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGAT  151 (228)
Q Consensus        73 ~~~~~~~l~~~~~dg-~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~  151 (228)
                      ++|+++.+++++.++ .+++|++...+....+... +...+++++|+|++.+|++|+.||.|++||+.+++...... ..
T Consensus       126 ~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~-~~  203 (287)
T d1pgua2         126 VSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTP-LRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRW-AF  203 (287)
T ss_dssp             EEECSSEEEEEETTTSCEEEEETTEEEEEEECSSC-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCS-CC
T ss_pred             eeccCcceeeeccccceeeeeeccccceeeeeeec-cCCceeEEEeccCccccccccccccccceeecccccccccc-cc
Confidence            334444444444443 4666665544444333332 26689999999999999999999999999999887654422 22


Q ss_pred             eeeeeeEEEECCCC----------cEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCE
Q 040370          152 HTQLRFQAVFNDTE----------EFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSV  221 (228)
Q Consensus       152 ~~~~~~~~~~~~~~----------~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i  221 (228)
                      |...+.++.|+|.+          .++++ ++.|+.|++||++++........+|.+.|++++|+|++ .|+++|.||.|
T Consensus       204 h~~~v~~~~~~p~~~~~~~~~~~~~~l~s-gs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~-~l~s~g~D~~v  281 (287)
T d1pgua2         204 RTSKINAISWKPAEKGANEEEIEEDLVAT-GSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS-TLVSSGADACI  281 (287)
T ss_dssp             CSSCEEEEEECCCC------CCSCCEEEE-EETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETT-EEEEEETTSCE
T ss_pred             cccccceeeecccccccccccCCCCeeEe-ecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECCCC-EEEEEECCCeE
Confidence            66778888888754          45554 55689999999988665555557999999999999986 58899999999


Q ss_pred             EEeeec
Q 040370          222 RFWKEI  227 (228)
Q Consensus       222 ~vwd~~  227 (228)
                      ++|++.
T Consensus       282 ~iW~i~  287 (287)
T d1pgua2         282 KRWNVV  287 (287)
T ss_dssp             EEEEEC
T ss_pred             EEEEEC
Confidence            999973

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4.4e-32  Score=197.10  Aligned_cols=209  Identities=9%  Similarity=0.049  Sum_probs=145.8

Q ss_pred             eecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCC-CCeEEEEecCCeEEEEeC
Q 040370           16 IQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSST-GGMYVTASKDGAIRLWDG   94 (228)
Q Consensus        16 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~v~iwd~   94 (228)
                      .+|.+.|++|+|+|++++||+|+.||+|+|||++.+........... |..+|.+++|+|+ +.+|++|+.||.|++|++
T Consensus         8 ~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~-h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~   86 (342)
T d1yfqa_           8 QAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLR-YKHPLLCCNFIDNTDLQIYVGTVQGEILKVDL   86 (342)
T ss_dssp             SCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEE-CSSCEEEEEEEESSSEEEEEEETTSCEEEECS
T ss_pred             CCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecC-CCCCEEEEEEeCCCCCEEEEcccccceeeeec
Confidence            36999999999999999999999999999999987654333333333 3889999999986 458999999999999999


Q ss_pred             CCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEe----cceeeeeeeEEEECCCCcEEEE
Q 040370           95 VSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYL----GATHTQLRFQAVFNDTEEFVLS  170 (228)
Q Consensus        95 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~  170 (228)
                      ..+........+. ........+.++...+++++.++.+++||++.+.......    ............+.+.+..++.
T Consensus        87 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (342)
T d1yfqa_          87 IGSPSFQALTNNE-ANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIV  165 (342)
T ss_dssp             SSSSSEEECBSCC-CCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEEEE
T ss_pred             ccccccccccccc-cccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeeeccCCceee
Confidence            9887777666554 3444555566788899999999999999987543222211    1111111222233334444444


Q ss_pred             eeCCCCeEEEEEcCCcc----------------------------------------------eeE------Ee------
Q 040370          171 IDEPSNEIVIWDALTAE----------------------------------------------KVA------KW------  192 (228)
Q Consensus       171 ~~~~d~~i~i~d~~~~~----------------------------------------------~~~------~~------  192 (228)
                      ++. |+.|++||++..+                                              ...      ..      
T Consensus       166 ~~~-d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~  244 (342)
T d1yfqa_         166 GMN-NSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLN  244 (342)
T ss_dssp             EES-TTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCC
T ss_pred             ecC-CCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeeeeeec
Confidence            333 4555555543221                                              000      00      


Q ss_pred             --ecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370          193 --SSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEI  227 (228)
Q Consensus       193 --~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~  227 (228)
                        ...|...+++++|+|++++|+||+.||.|++||+.
T Consensus       245 ~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~  281 (342)
T d1yfqa_         245 LKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQ  281 (342)
T ss_dssp             TTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETT
T ss_pred             cCCCcccccceeEEecCCccEEEEECCCCEEEEEECC
Confidence              02455678999999999999999999999999964

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.4e-31  Score=193.61  Aligned_cols=150  Identities=15%  Similarity=0.190  Sum_probs=119.3

Q ss_pred             cceeeEEeCCCCCeEEEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEE
Q 040370           66 GAINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVK  145 (228)
Q Consensus        66 ~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~  145 (228)
                      ..+.++.|+|+++.+++++.|+.|++||++++..+..+..|  ...|.+++++  +++|++++.||.|++||++++....
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h--~~~v~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~  277 (355)
T d1nexb2         202 DRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGH--TALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKF  277 (355)
T ss_dssp             SCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEECCC--SSCCCEEEEC--SSEEEEECTTSEEEEEETTTCCEEE
T ss_pred             cccccccccccceeeecccccceEEeeeccccccccccccc--cccccccccc--cceeeeeecccccccccccccceec
Confidence            34556778888899999999999999999999988888776  6788999886  4689999999999999999876554


Q ss_pred             EEecceeeeeeeE-EEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEe
Q 040370          146 QYLGATHTQLRFQ-AVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFW  224 (228)
Q Consensus       146 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vw  224 (228)
                      ...    ...+.. ..+++++.+++ +++ |+.|++||+++++.+.....+|.++|.+++|+|+ .++++++.||.++||
T Consensus       278 ~~~----~~~~~~~~~~~~~~~~l~-~g~-d~~i~vwd~~tg~~~~~~~~~~~~~V~~v~~~~~-~~~~~~s~dg~~~l~  350 (355)
T d1nexb2         278 SYH----HTNLSAITTFYVSDNILV-SGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFKGK-TLVAAVEKDGQSFLE  350 (355)
T ss_dssp             EEE----CTTCCCCCEEEECSSEEE-EEE-TTEEEEEETTTCCBCCSCTTTTCSEEEEEEEETT-EEEEEEESSSCEEEE
T ss_pred             ccc----cCCceEEEEEcCCCCEEE-EEe-CCEEEEEECCCCCEEEEEecCCCCCEEEEEEcCC-eEEEEEECCCcEEEE
Confidence            432    222333 34556666554 455 7999999999999887655789999999999986 578889999998776


Q ss_pred             ee
Q 040370          225 KE  226 (228)
Q Consensus       225 d~  226 (228)
                      .+
T Consensus       351 ~~  352 (355)
T d1nexb2         351 IL  352 (355)
T ss_dssp             EE
T ss_pred             EE
Confidence            54

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=8e-31  Score=195.42  Aligned_cols=208  Identities=14%  Similarity=0.202  Sum_probs=147.5

Q ss_pred             eecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeee--------ccceeee----------------------c
Q 040370           16 IQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSA--------NVPEISV----------------------N   65 (228)
Q Consensus        16 ~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~--------~~~~~~~----------------------~   65 (228)
                      .+|...|.+++++  ++++++++.|++|+|||....+.....        .....+|                      .
T Consensus        11 ~~H~~~I~~v~~~--~~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~d   88 (393)
T d1sq9a_          11 KAHDADIFSVSAC--NSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFS   88 (393)
T ss_dssp             SCSSSCEEEEEEC--SSEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETT
T ss_pred             CcccCccEEEEEe--CCEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEEEeCC
Confidence            3799999999986  479999999999999997543210000        0000000                      0


Q ss_pred             cce-------------------------------eeEEeCCC-----CCeEEEEecCCeEEEEeCCCCc-----------
Q 040370           66 GAI-------------------------------NQVRYSST-----GGMYVTASKDGAIRLWDGVSAN-----------   98 (228)
Q Consensus        66 ~~i-------------------------------~~~~~~~~-----~~~l~~~~~dg~v~iwd~~~~~-----------   98 (228)
                      +.|                               ..++|.++     +.++++++.||.+++|++....           
T Consensus        89 g~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~~  168 (393)
T d1sq9a_          89 GDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWS  168 (393)
T ss_dssp             SCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCC
T ss_pred             CcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeeeeec
Confidence            111                               11223222     2456677777777777754211           


Q ss_pred             ee----eEEe-cccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecc----eeeeeeeEEEECCCCcEEE
Q 040370           99 CV----RSIV-GAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGA----THTQLRFQAVFNDTEEFVL  169 (228)
Q Consensus        99 ~~----~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~  169 (228)
                      ..    .... .......+.+++|+|++ +|++|+.|+.|++||+++++++..+...    .|...+.+++|+|++++++
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~  247 (393)
T d1sq9a_         169 PTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLA  247 (393)
T ss_dssp             CEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEE
T ss_pred             cceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeecccccccccccccccccccceEEEcccccccceee
Confidence            00    0000 11123457889999987 8999999999999999999887766532    2677899999999999998


Q ss_pred             EeeCCCC---eEEEEEcCCcceeEEee------------cCCCCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370          170 SIDEPSN---EIVIWDALTAEKVAKWS------------SNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEI  227 (228)
Q Consensus       170 ~~~~~d~---~i~i~d~~~~~~~~~~~------------~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~  227 (228)
                      +++. |+   .|++||+++++.+..+.            .+|.+.|++++|+|++++|+|+|.|++|++||+.
T Consensus       248 sgs~-D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~  319 (393)
T d1sq9a_         248 IAHD-SNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVK  319 (393)
T ss_dssp             EEEE-ETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETT
T ss_pred             eecC-CCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECC
Confidence            8765 44   59999999988777663            3799999999999999999999999999999963

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.7e-30  Score=193.63  Aligned_cols=205  Identities=16%  Similarity=0.245  Sum_probs=157.3

Q ss_pred             cCcceEEEEEeCC-----CCEEEEecCCCeEEEEEcccce---------------EEeeeccceeeeccceeeEEeCCCC
Q 040370           18 DTHNVRSVSFHPS-----GDFLLAGTDHPIAHLYDVNTFQ---------------CYLSANVPEISVNGAINQVRYSSTG   77 (228)
Q Consensus        18 ~~~~v~~~~~~~~-----~~~l~~~~~d~~i~vw~~~~~~---------------~~~~~~~~~~~~~~~i~~~~~~~~~   77 (228)
                      +...+..++|.++     +.++++++.||.+++|++....               ......... .+...+.+++|+|++
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~s~dg  196 (393)
T d1sq9a_         118 KKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPM-TPSQFATSVDISERG  196 (393)
T ss_dssp             GGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSS-SSCCCCCEEEECTTS
T ss_pred             CCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeeeeeccceecccceeccc-CCCCcEEEEEECCCC
Confidence            4556788888775     4688999999999999985321               011111111 125568999999987


Q ss_pred             CeEEEEecCCeEEEEeCCCCceeeEEecc----cccceeEEEEECCCCCEEEEeeCCC---eEEEEEccCCeeEEEEec-
Q 040370           78 GMYVTASKDGAIRLWDGVSANCVRSIVGA----HGTAEATSANFTKDQRFVLSCGKDS---TVKLWEVSSGRLVKQYLG-  149 (228)
Q Consensus        78 ~~l~~~~~dg~v~iwd~~~~~~~~~~~~~----~~~~~i~~~~~~~~~~~l~~~~~d~---~i~~wd~~~~~~~~~~~~-  149 (228)
                       +|++|+.||+|++||+++++.+..+...    .+..+|.+++|+|++++|++|+.|+   .|++||+++++.+..+.. 
T Consensus       197 -~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~  275 (393)
T d1sq9a_         197 -LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVP  275 (393)
T ss_dssp             -EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC
T ss_pred             -EEEEEeCCCcEEEEeecccccccccccccccccccceEEEcccccccceeeeecCCCCcceeeecccccceeeeeeccc
Confidence             8999999999999999999887766532    2377899999999999999999987   499999999988877642 


Q ss_pred             ----------ceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCc-------------------
Q 040370          150 ----------ATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAP-------------------  200 (228)
Q Consensus       150 ----------~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v-------------------  200 (228)
                                ..|...+.+++|+|+++++++++. |+.|++||+++++++.++ .+|.+.|                   
T Consensus       276 ~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~-D~~v~vWd~~~g~~~~~l-~gH~~~v~~~~~~~~~~~~~~~~~~~  353 (393)
T d1sq9a_         276 THSSQASLGEFAHSSWVMSLSFNDSGETLCSAGW-DGKLRFWDVKTKERITTL-NMHCDDIEIEEDILAVDEHGDSLAEP  353 (393)
T ss_dssp             --------CCBSBSSCEEEEEECSSSSEEEEEET-TSEEEEEETTTTEEEEEE-ECCGGGCSSGGGCCCBCTTSCBCSSC
T ss_pred             cccccceeeeecccCceeeeccCCCCCeeEEECC-CCEEEEEECCCCCEEEEE-CCcCCcccCCccEEEECCCCCEEEEc
Confidence                      126778999999999999888665 899999999999998887 5775444                   


Q ss_pred             --EEEEeCCCC----------cEEEEecCCCCEEEeee
Q 040370          201 --RWIEHSPAE----------AAFITCGTDRSVRFWKE  226 (228)
Q Consensus       201 --~~~~~~~~~----------~~l~s~~~dg~i~vwd~  226 (228)
                        .++.|.+.+          ..|++++.|+.|++|+.
T Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ir~~~~  391 (393)
T d1sq9a_         354 GVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFRE  391 (393)
T ss_dssp             CEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEE
T ss_pred             ccceEEECccCceeccccCCCCEEEEEEcCCeEEEEeC
Confidence              344444322          34788888999999874

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.3e-28  Score=175.30  Aligned_cols=207  Identities=20%  Similarity=0.372  Sum_probs=154.5

Q ss_pred             CCcCCccccceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccce-------------------
Q 040370            1 FFDFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPE-------------------   61 (228)
Q Consensus         1 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~-------------------   61 (228)
                      |||+.+.  +....+.+|..+|++++|  ++++|++|+.|+.|++|++..+..........                   
T Consensus        39 vWd~~~~--~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (293)
T d1p22a2          39 IWDKNTL--ECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKD  114 (293)
T ss_dssp             EEESSSC--CEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECCTTEEEEEETT
T ss_pred             EEECCCC--cEEEEEecCCCCEeeeec--ccceeecccccccccccccccccccccccccccccccccccccceeecccc
Confidence            5887744  344556689999999987  67899999999999999987765332211100                   


Q ss_pred             --------------------eeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCC
Q 040370           62 --------------------ISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQ  121 (228)
Q Consensus        62 --------------------~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~  121 (228)
                                          ..+...+.++.+.  ...+++++.|+.+++||+++++.+..+..+  ...+..+.++  +
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~s~d~~i~~~d~~~~~~~~~~~~~--~~~v~~~~~~--~  188 (293)
T d1p22a2         115 RSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWNTSTCEFVRTLNGH--KRGIACLQYR--D  188 (293)
T ss_dssp             SCEEEEECSSSSCCEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTTCCEEEEEECC--SSCEEEEEEE--T
T ss_pred             cceeEeeccccccccccccccccccccccceec--ccccccccCCCceeeecCCCCcEEEEEccc--ccccccccCC--C
Confidence                                0113344444443  456888999999999999999998888776  5567777665  5


Q ss_pred             CEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcc---------eeEEe
Q 040370          122 RFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAE---------KVAKW  192 (228)
Q Consensus       122 ~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~---------~~~~~  192 (228)
                      .++++++.|+.|++||+++.+.+.....  +...+.  .+.+++.++++++. ||.|++||++...         .+..+
T Consensus       189 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~--~~~~v~--~~~~~~~~l~sg~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~  263 (293)
T d1p22a2         189 RLVVSGSSDNTIRLWDIECGACLRVLEG--HEELVR--CIRFDNKRIVSGAY-DGKIKVWDLVAALDPRAPAGTLCLRTL  263 (293)
T ss_dssp             TEEEEEETTSCEEEEETTTCCEEEEECC--CSSCEE--EEECCSSEEEEEET-TSCEEEEEHHHHTSTTSCTTTTEEEEE
T ss_pred             CeEEEecCCCEEEEEecccceeeeeecc--cceeee--eccccceEEEEEcC-CCEEEEEECCCCccccccCCceeeEEe
Confidence            6899999999999999999988887765  333333  34567777777655 8999999976432         34444


Q ss_pred             ecCCCCCcEEEEeCCCCcEEEEecCCCCEEEee
Q 040370          193 SSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWK  225 (228)
Q Consensus       193 ~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd  225 (228)
                       .+|.+.|++++|+  +.+|+|||.||+|++||
T Consensus       264 -~~H~~~V~~v~~d--~~~l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         264 -VEHSGRVFRLQFD--EFQIVSSSHDDTILIWD  293 (293)
T ss_dssp             -CCCSSCCCCEEEC--SSCEEECCSSSEEEEEC
T ss_pred             -cCCCCCEEEEEEc--CCEEEEEecCCEEEEeC
Confidence             7899999999995  56899999999999998

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=6.8e-28  Score=171.49  Aligned_cols=194  Identities=18%  Similarity=0.373  Sum_probs=148.8

Q ss_pred             EeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeC
Q 040370           15 VIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDG   94 (228)
Q Consensus        15 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~   94 (228)
                      ..+|...|+|++|  ++++||+|+.||+|+|||+++++++..+..   | .+.|++++|  ++++|++|+.|+.|++|++
T Consensus        11 ~~~~~~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~---H-~~~V~~v~~--~~~~l~s~s~D~~i~~~~~   82 (293)
T d1p22a2          11 RSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTG---H-TGSVLCLQY--DERVIITGSSDSTVRVWDV   82 (293)
T ss_dssp             CCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECC---C-SSCEEEEEC--CSSEEEEEETTSCEEEEES
T ss_pred             cCCCCCCEEEEEE--cCCEEEEEeCCCeEEEEECCCCcEEEEEec---C-CCCEeeeec--ccceeeccccccccccccc
Confidence            3467889998765  799999999999999999999988776653   3 888999988  5679999999999999998


Q ss_pred             CCCceeeEEecc-----------------------------------------cccceeEEEEECCCCCEEEEeeCCCeE
Q 040370           95 VSANCVRSIVGA-----------------------------------------HGTAEATSANFTKDQRFVLSCGKDSTV  133 (228)
Q Consensus        95 ~~~~~~~~~~~~-----------------------------------------~~~~~i~~~~~~~~~~~l~~~~~d~~i  133 (228)
                      ..+.........                                         .+...+..+.+.  ...+++++.|+.|
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~s~d~~i  160 (293)
T d1p22a2          83 NTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTI  160 (293)
T ss_dssp             SSCCEEEEECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEE
T ss_pred             ccccccccccccccccccccccccceeecccccceeEeeccccccccccccccccccccccceec--ccccccccCCCce
Confidence            776543332111                                         012333444433  4567888999999


Q ss_pred             EEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEE
Q 040370          134 KLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFI  213 (228)
Q Consensus       134 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  213 (228)
                      ++||+++++.+..+.+  +...+..+.+  ++.++++++. |+.|++||+++.+.+... .+|...+..  +++++.+|+
T Consensus       161 ~~~d~~~~~~~~~~~~--~~~~v~~~~~--~~~~l~~~~~-dg~i~i~d~~~~~~~~~~-~~~~~~v~~--~~~~~~~l~  232 (293)
T d1p22a2         161 KVWNTSTCEFVRTLNG--HKRGIACLQY--RDRLVVSGSS-DNTIRLWDIECGACLRVL-EGHEELVRC--IRFDNKRIV  232 (293)
T ss_dssp             EEEETTTCCEEEEEEC--CSSCEEEEEE--ETTEEEEEET-TSCEEEEETTTCCEEEEE-CCCSSCEEE--EECCSSEEE
T ss_pred             eeecCCCCcEEEEEcc--cccccccccC--CCCeEEEecC-CCEEEEEecccceeeeee-cccceeeee--ccccceEEE
Confidence            9999999998888876  3444445444  3556666555 899999999999988877 677777765  456788999


Q ss_pred             EecCCCCEEEeee
Q 040370          214 TCGTDRSVRFWKE  226 (228)
Q Consensus       214 s~~~dg~i~vwd~  226 (228)
                      +++.||.|++||+
T Consensus       233 sg~~dg~i~iwd~  245 (293)
T d1p22a2         233 SGAYDGKIKVWDL  245 (293)
T ss_dssp             EEETTSCEEEEEH
T ss_pred             EEcCCCEEEEEEC
Confidence            9999999999996

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.97  E-value=6.3e-29  Score=182.29  Aligned_cols=167  Identities=11%  Similarity=0.076  Sum_probs=126.5

Q ss_pred             CCcCCccccceeEEEeecCcceEEEEEeCCCCEEEEecCCC--eEEEEEcccceEEeeeccceeeeccceeeEEeCCCCC
Q 040370            1 FFDFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHP--IAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGG   78 (228)
Q Consensus         1 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~--~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~   78 (228)
                      |||.+...   ..+ ..|...|.+++|+|||++|++++.+.  .|++||.++++.....    .+ ...+.+++|+|+++
T Consensus        28 v~d~~~~~---~~~-~~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~~~~----~~-~~~v~~~~~spdg~   98 (360)
T d1k32a3          28 IQDVSGTY---VLK-VPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFE----EN-LGNVFAMGVDRNGK   98 (360)
T ss_dssp             EECTTSSB---EEE-CSCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEEECC----CC-CCSEEEEEECTTSS
T ss_pred             EEECCCCc---EEE-ccCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEEEee----CC-CceEEeeeeccccc
Confidence            35665332   333 47999999999999999998766543  7999999988755432    22 78899999999999


Q ss_pred             eEEEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEee----------CCCeEEEEEccCCeeEEEEe
Q 040370           79 MYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCG----------KDSTVKLWEVSSGRLVKQYL  148 (228)
Q Consensus        79 ~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~----------~d~~i~~wd~~~~~~~~~~~  148 (228)
                      +|++++.++.+++|++.+++....+..+  ...+.+++|+|++++|+.+.          .++.+++||+.+++......
T Consensus        99 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~  176 (360)
T d1k32a3          99 FAVVANDRFEIMTVDLETGKPTVIERSR--EAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATT  176 (360)
T ss_dssp             EEEEEETTSEEEEEETTTCCEEEEEECS--SSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSC
T ss_pred             ccceeccccccccccccccceeeeeecc--cccccchhhccceeeeeeeccccccceeeccccceeeeccccCceeeecc
Confidence            9999999999999999999888877765  66788999999999998543          45579999998876554332


Q ss_pred             cceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEE
Q 040370          149 GATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWD  182 (228)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d  182 (228)
                         +........++|++++++.++. ++.+.+||
T Consensus       177 ---~~~~~~~~~~spdg~~l~~~s~-~~~~~~~d  206 (360)
T d1k32a3         177 ---ENSHDYAPAFDADSKNLYYLSY-RSLDPSPD  206 (360)
T ss_dssp             ---SSSBEEEEEECTTSCEEEEEES-CCCCCEEC
T ss_pred             ---cccccccccccCCCCEEEEEeC-CCceEccc
Confidence               3344556677777777776554 45555554

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.97  E-value=2.9e-28  Score=177.21  Aligned_cols=164  Identities=21%  Similarity=0.273  Sum_probs=146.2

Q ss_pred             eEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEE
Q 040370           12 AFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRL   91 (228)
Q Consensus        12 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i   91 (228)
                      ......+...+....+.+.+.++++|+.|+.|++||+++++....+..   | ...|++++|+|++++|++|+.||.|++
T Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~---h-~~~i~~v~~~p~~~~l~s~s~d~~i~~  252 (340)
T d1tbga_         177 TTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTG---H-ESDINAICFFPNGNAFATGSDDATCRL  252 (340)
T ss_dssp             EEEEECCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECC---C-SSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred             cccccccceeEeeeccccccceeEEeecCceEEEEECCCCcEEEEEeC---C-CCCeEEEEECCCCCEEEEEeCCCeEEE
Confidence            344446778899999999999999999999999999999988776653   2 788999999999999999999999999


Q ss_pred             EeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEe
Q 040370           92 WDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSI  171 (228)
Q Consensus        92 wd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (228)
                      ||++.......+....+...+.+++|+|++++|++|+.||.|++||+.+++.+..+.+  |...+.+++|+|++.+++++
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~--H~~~V~~l~~s~d~~~l~s~  330 (340)
T d1tbga_         253 FDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAG--HDNRVSCLGVTDDGMAVATG  330 (340)
T ss_dssp             EETTTTEEEEEECCTTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCCEEEEECC--CSSCEEEEEECTTSSCEEEE
T ss_pred             EeecccccccccccccccCceEEEEECCCCCEEEEEECCCEEEEEECCCCcEEEEEcC--CCCCEEEEEEeCCCCEEEEE
Confidence            9999998888776666678899999999999999999999999999999999999877  66789999999999999886


Q ss_pred             eCCCCeEEEEE
Q 040370          172 DEPSNEIVIWD  182 (228)
Q Consensus       172 ~~~d~~i~i~d  182 (228)
                      +. ||.|++||
T Consensus       331 s~-Dg~v~iWd  340 (340)
T d1tbga_         331 SW-DSFLKIWN  340 (340)
T ss_dssp             ET-TSCEEEEC
T ss_pred             cc-CCEEEEeC
Confidence            65 89999997

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=3.1e-28  Score=175.00  Aligned_cols=170  Identities=18%  Similarity=0.401  Sum_probs=146.6

Q ss_pred             CcCCccccceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCC----
Q 040370            2 FDFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTG----   77 (228)
Q Consensus         2 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----   77 (228)
                      ||+...  .....+..|...+.+++|+|++++|++++.|+.|++|++.+++....+...    ...+.++.|+|++    
T Consensus       128 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~----~~~i~~~~~~~~~~~~~  201 (317)
T d1vyhc1         128 WEVQTG--YCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREH----RHVVECISWAPESSYSS  201 (317)
T ss_dssp             EETTTC--CEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCC----SSCEEEEEECCSCGGGG
T ss_pred             eecccc--eeeeEEccCCCcceeeecccCCCEEEEEeCCCeEEEEeeccceeeEEEecC----CCCceEEEEeeccccce
Confidence            555533  344556679999999999999999999999999999999998876655432    6678888887654    


Q ss_pred             ----------------CeEEEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCC
Q 040370           78 ----------------GMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSG  141 (228)
Q Consensus        78 ----------------~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~  141 (228)
                                      ..+++++.|+.|++||+++++.+..+..+  ...|.+++|+|++++|++|+.||.|++||++++
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~  279 (317)
T d1vyhc1         202 ISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGH--DNWVRGVLFHSGGKFILSCADDKTLRVWDYKNK  279 (317)
T ss_dssp             GGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECC--SSCEEEEEECSSSSCEEEEETTTEEEEECCTTS
T ss_pred             eeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEeCC--CCCEEEEEECCCCCEEEEEECCCeEEEEECCCC
Confidence                            46899999999999999999999998876  678999999999999999999999999999999


Q ss_pred             eeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEE
Q 040370          142 RLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWD  182 (228)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d  182 (228)
                      +.+..+.+  |...+.++.|+|+++++++++. ||.|++||
T Consensus       280 ~~~~~~~~--h~~~V~~~~~s~~~~~l~s~s~-Dg~i~iWd  317 (317)
T d1vyhc1         280 RCMKTLNA--HEHFVTSLDFHKTAPYVVTGSV-DQTVKVWE  317 (317)
T ss_dssp             CCCEEEEC--CSSCEEEEEECSSSSCEEEEET-TSEEEEEC
T ss_pred             cEEEEEcC--CCCCEEEEEEcCCCCEEEEEeC-CCeEEEeC
Confidence            99999877  6678999999999999988665 89999997

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.96  E-value=1.7e-27  Score=174.61  Aligned_cols=189  Identities=10%  Similarity=0.038  Sum_probs=156.7

Q ss_pred             EEEEeC-CCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCC--eEEEEeCCCCcee
Q 040370           24 SVSFHP-SGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDG--AIRLWDGVSANCV  100 (228)
Q Consensus        24 ~~~~~~-~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg--~v~iwd~~~~~~~  100 (228)
                      .-.||| ||+++|+++. |.|++||++.+...+.     .| ...|.+++|+|+|+.|++++.+.  .|++||.++++..
T Consensus         7 ~~~fSP~dG~~~a~~~~-g~v~v~d~~~~~~~~~-----~~-~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~   79 (360)
T d1k32a3           7 AEDFSPLDGDLIAFVSR-GQAFIQDVSGTYVLKV-----PE-PLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAE   79 (360)
T ss_dssp             EEEEEECGGGCEEEEET-TEEEEECTTSSBEEEC-----SC-CSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEE
T ss_pred             cccccCCCCCEEEEEEC-CeEEEEECCCCcEEEc-----cC-CCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEE
Confidence            467999 9999998874 7999999998876542     22 77899999999999998777553  7999999887655


Q ss_pred             eEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEee--------
Q 040370          101 RSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSID--------  172 (228)
Q Consensus       101 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------  172 (228)
                      + +..+  ...+.+++|+|++++|++++.++.+++|++.+++....+..  +...+..+.|+|++++++.+.        
T Consensus        80 ~-~~~~--~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~spdg~~la~~~~~~~~~~~  154 (360)
T d1k32a3          80 K-FEEN--LGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERS--REAMITDFTISDNSRFIAYGFPLKHGETD  154 (360)
T ss_dssp             E-CCCC--CCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEEC--SSSCCCCEEECTTSCEEEEEEEECSSTTC
T ss_pred             E-eeCC--CceEEeeeecccccccceeccccccccccccccceeeeeec--ccccccchhhccceeeeeeecccccccee
Confidence            3 3333  77899999999999999999999999999999888777765  556677899999999988643        


Q ss_pred             -CCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeee
Q 040370          173 -EPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKE  226 (228)
Q Consensus       173 -~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~  226 (228)
                       ..++.+++||..+++.....  .+...+..+.|+|+|++|++++.|+.+++|+.
T Consensus       155 ~~~~~~~~v~d~~~~~~~~~~--~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~  207 (360)
T d1k32a3         155 GYVMQAIHVYDMEGRKIFAAT--TENSHDYAPAFDADSKNLYYLSYRSLDPSPDR  207 (360)
T ss_dssp             SCCEEEEEEEETTTTEEEECS--CSSSBEEEEEECTTSCEEEEEESCCCCCEECS
T ss_pred             eccccceeeeccccCceeeec--ccccccccccccCCCCEEEEEeCCCceEcccc
Confidence             33567999999887665543  56778899999999999999999999999985

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.96  E-value=4.3e-27  Score=168.68  Aligned_cols=164  Identities=15%  Similarity=0.230  Sum_probs=127.1

Q ss_pred             ecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCC
Q 040370           17 QDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVS   96 (228)
Q Consensus        17 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~   96 (228)
                      .....+.+++|+|++++|++|+.|+.|++||+++++......   ..|...|++++|+|+++++++++.|+.|++||+.+
T Consensus       134 ~~~~~~~~~~~s~~~~~l~~g~~dg~i~~~d~~~~~~~~~~~---~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~  210 (299)
T d1nr0a2         134 PISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKT---IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVAN  210 (299)
T ss_dssp             ECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEE---EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGG
T ss_pred             cccccccccccccccccccccccccccccccccccccccccc---ccccccccccccccccccccccccccccccccccc
Confidence            345678999999999999999999999999998876543222   22378899999999999999999999999999988


Q ss_pred             CceeeEEec-ccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCC
Q 040370           97 ANCVRSIVG-AHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPS  175 (228)
Q Consensus        97 ~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  175 (228)
                      +........ ..+...|++++|+|++++|++|+.|+.|++||++++..........+........+.+++.++++++. |
T Consensus       211 ~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~s~-D  289 (299)
T d1nr0a2         211 NFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQ-D  289 (299)
T ss_dssp             TTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEETTEEEEEET-T
T ss_pred             cccccccccccccccccccccccccccceEEEcCCCEEEEEECCCCCcceEEEecCCCCCcEEEEEECCCCEEEEEeC-C
Confidence            765543322 12367899999999999999999999999999988765444433323333333334456778777665 8


Q ss_pred             CeEEEEEcC
Q 040370          176 NEIVIWDAL  184 (228)
Q Consensus       176 ~~i~i~d~~  184 (228)
                      +.|++||+.
T Consensus       290 ~~i~iWdl~  298 (299)
T d1nr0a2         290 SNIKFWNVP  298 (299)
T ss_dssp             SCEEEEECC
T ss_pred             CEEEEEecc
Confidence            999999973

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=1.1e-26  Score=168.36  Aligned_cols=220  Identities=10%  Similarity=0.077  Sum_probs=153.6

Q ss_pred             CCcCCcccc-ceeEEEeecCcceEEEEEeCC-CCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCC
Q 040370            1 FFDFSKATA-KRAFRVIQDTHNVRSVSFHPS-GDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGG   78 (228)
Q Consensus         1 iwd~~~~~~-~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~   78 (228)
                      |||+..... .......+|..+|.+++|+|+ +.+|++|+.|+.|++|++.............   ........+.++..
T Consensus        37 iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~  113 (342)
T d1yfqa_          37 VYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNE---ANLGICRICKYGDD  113 (342)
T ss_dssp             EEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEEECBSCC---CCSCEEEEEEETTT
T ss_pred             EEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccceeeeecccccccccccccc---cccccccccccccc
Confidence            578765443 334455589999999999986 5588999999999999998876554443321   33444555667888


Q ss_pred             eEEEEecCCeEEEEeCCCCceeeEEe----cccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEe------
Q 040370           79 MYVTASKDGAIRLWDGVSANCVRSIV----GAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYL------  148 (228)
Q Consensus        79 ~l~~~~~dg~v~iwd~~~~~~~~~~~----~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~------  148 (228)
                      .+++++.++.+++||++.+.......    .+..........+.+.+..+++++.|+.|++||++..+......      
T Consensus       114 ~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~  193 (342)
T d1yfqa_         114 KLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLK  193 (342)
T ss_dssp             EEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCS
T ss_pred             cccccccccccceeeccccccceeeecccccccccceeeeeeeeccCCceeeecCCCcEEEEecccCcccceeeeecccc
Confidence            99999999999999987654332222    11112233455566677788888888888888875432110000      


Q ss_pred             -----------------------------------------------------cceeeeeeeEEEECCCCcEEEEeeCCC
Q 040370          149 -----------------------------------------------------GATHTQLRFQAVFNDTEEFVLSIDEPS  175 (228)
Q Consensus       149 -----------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~d  175 (228)
                                                                           ...+...+.+++|+|++.++++++. |
T Consensus       194 ~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~-D  272 (342)
T d1yfqa_         194 YQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGS-D  272 (342)
T ss_dssp             SCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEET-T
T ss_pred             cceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeeeeeeccCCCcccccceeEEecCCccEEEEECC-C
Confidence                                                                 0011223467899999999888666 8


Q ss_pred             CeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeee
Q 040370          176 NEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKE  226 (228)
Q Consensus       176 ~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~  226 (228)
                      |.|++||+++++.+..+...  ..+..++|+|++++|++++.|+.+++|..
T Consensus       273 g~v~vWD~~~~~~l~~~~~~--~~~~~~~~s~~~~~l~~a~sdd~~~~~~~  321 (342)
T d1yfqa_         273 GIISCWNLQTRKKIKNFAKF--NEDSVVKIACSDNILCLATSDDTFKTNAA  321 (342)
T ss_dssp             SCEEEEETTTTEEEEECCCC--SSSEEEEEEECSSEEEEEEECTHHHHCSS
T ss_pred             CEEEEEECCCCcEEEEecCC--CCCEEEEEEeCCCEEEEEEcCCcEEEeee
Confidence            99999999999988877433  35566778889999999998887777653

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.95  E-value=2.2e-25  Score=167.53  Aligned_cols=223  Identities=8%  Similarity=0.002  Sum_probs=155.4

Q ss_pred             CCcCCccccceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEee--eccceeeeccceeeEEeCCCCC
Q 040370            1 FFDFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLS--ANVPEISVNGAINQVRYSSTGG   78 (228)
Q Consensus         1 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~   78 (228)
                      |||..+.+.  ..++ .+...+..++|+|||++|++++.|+.|++||+.+++....  ......+ ...+.+++|+|+|+
T Consensus        46 vwD~~t~~~--~~~l-~~g~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~-~~~~~s~~~spDG~  121 (426)
T d1hzua2          46 LVDGDSKKI--VKVI-DTGYAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEA-RSVESSKFKGYEDR  121 (426)
T ss_dssp             EEETTTCSE--EEEE-ECCSSEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEE-EEEEECCSTTCTTT
T ss_pred             EEECCCCcE--EEEE-eCCCCeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCC-cceEEeeeecCCCC
Confidence            577774433  2333 3345799999999999999999999999999998874433  3333333 66778889999999


Q ss_pred             eEE-EEecCCeEEEEeCCCCceeeEEeccc--------------------------------------------------
Q 040370           79 MYV-TASKDGAIRLWDGVSANCVRSIVGAH--------------------------------------------------  107 (228)
Q Consensus        79 ~l~-~~~~dg~v~iwd~~~~~~~~~~~~~~--------------------------------------------------  107 (228)
                      +++ ++..++.+++||..+++.......+.                                                  
T Consensus       122 ~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~  201 (426)
T d1hzua2         122 YTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVT  201 (426)
T ss_dssp             EEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEEE
T ss_pred             EEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEeccccceeeE
Confidence            875 45588999999988766544332110                                                  


Q ss_pred             ---ccceeEEEEECCCCCEEEEee-CCCeEEEEEccCCeeEEEEec----------------------------------
Q 040370          108 ---GTAEATSANFTKDQRFVLSCG-KDSTVKLWEVSSGRLVKQYLG----------------------------------  149 (228)
Q Consensus       108 ---~~~~i~~~~~~~~~~~l~~~~-~d~~i~~wd~~~~~~~~~~~~----------------------------------  149 (228)
                         ....+..+.|+|++++++++. .+..+.++|..+++.+.....                                  
T Consensus       202 ~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~  281 (426)
T d1hzua2         202 SIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLI  281 (426)
T ss_dssp             EEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEE
T ss_pred             EeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEeccCCCceEEEe
Confidence               122345788999888877665 445677787766554332210                                  


Q ss_pred             ------------------ceeeeeeeEEEECCCCcEEEEe------eCCCCeEEEEEcCCcceeEEee--------cCCC
Q 040370          150 ------------------ATHTQLRFQAVFNDTEEFVLSI------DEPSNEIVIWDALTAEKVAKWS--------SNHI  197 (228)
Q Consensus       150 ------------------~~~~~~~~~~~~~~~~~~~~~~------~~~d~~i~i~d~~~~~~~~~~~--------~~~~  197 (228)
                                        ..|...+..++++|++.++++.      +..|++|++||+++++...++.        ..|.
T Consensus       282 ~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~  361 (426)
T d1hzua2         282 GTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGA  361 (426)
T ss_dssp             ECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSC
T ss_pred             eccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccchhcccCCCC
Confidence                              0023345678899999999963      3446899999999988766542        2456


Q ss_pred             CCcEEEEeCCCCcEEE-Ee----cCCCCEEEeeec
Q 040370          198 GAPRWIEHSPAEAAFI-TC----GTDRSVRFWKEI  227 (228)
Q Consensus       198 ~~v~~~~~~~~~~~l~-s~----~~dg~i~vwd~~  227 (228)
                      ..+..++|+|||++++ ++    +.+|.|+|||..
T Consensus       362 ~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~~  396 (426)
T d1hzua2         362 KRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDK  396 (426)
T ss_dssp             CCEEEEEECSSSSEEEEEECCCTTSCCEEEEEETT
T ss_pred             ccEEEEEECCCCCEEEEEEecCCCCCCeEEEEECC
Confidence            6799999999998774 32    468889999953

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.94  E-value=7.7e-24  Score=151.38  Aligned_cols=213  Identities=13%  Similarity=0.090  Sum_probs=159.4

Q ss_pred             CCcCCccccceeEEEeecCcceEEEEEeCCCCEEE-EecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCe
Q 040370            1 FFDFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLL-AGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGM   79 (228)
Q Consensus         1 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~   79 (228)
                      |||.++.+   ..+.......+..++|+|+|++|+ +++.++.|++||+.+++.+..+..     ...+..+.|+++++.
T Consensus        16 v~D~~t~~---~~~~i~~g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~-----~~~~~~~~~~~~~~~   87 (301)
T d1l0qa2          16 VIDVTSNK---VTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPA-----GSSPQGVAVSPDGKQ   87 (301)
T ss_dssp             EEETTTTE---EEEEEECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEEC-----SSSEEEEEECTTSSE
T ss_pred             EEECCCCe---EEEEEECCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeec-----ccccccccccccccc
Confidence            46766443   334445566789999999999874 677889999999999988776543     345688999999885


Q ss_pred             EE-EEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEE-EeeCCCeEEEEEccCCeeEEEEecce------
Q 040370           80 YV-TASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVL-SCGKDSTVKLWEVSSGRLVKQYLGAT------  151 (228)
Q Consensus        80 l~-~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~d~~i~~wd~~~~~~~~~~~~~~------  151 (228)
                      ++ ++..++.+.+|+..+++....+..   .....++.++|+++.++ ++..++.+.+|+..+.+....+....      
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (301)
T d1l0qa2          88 VYVTNMASSTLSVIDTTSNTVAGTVKT---GKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIA  164 (301)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEEEC---SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSEEEEE
T ss_pred             ccccccccceeeecccccceeeeeccc---cccceEEEeecCCCeeeeeeccccceeeeeccccceeeecccCCCceEEE
Confidence            55 556778999999999988888766   34567899999998765 55568889999988776554432110      


Q ss_pred             ---------------------------------eeeeeeEEEECCCCcEEEEee--CCCCeEEEEEcCCcceeEEeecCC
Q 040370          152 ---------------------------------HTQLRFQAVFNDTEEFVLSID--EPSNEIVIWDALTAEKVAKWSSNH  196 (228)
Q Consensus       152 ---------------------------------~~~~~~~~~~~~~~~~~~~~~--~~d~~i~i~d~~~~~~~~~~~~~~  196 (228)
                                                       .......+.+++++..+++++  ..++.|++||..+++....+.  +
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~--~  242 (301)
T d1l0qa2         165 VTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIP--V  242 (301)
T ss_dssp             ECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEE--C
T ss_pred             eeccccceeeecccccccccccccceeeeecccccCCcceeeccccccccccccccceeeeeeeeecCCCeEEEEEc--C
Confidence                                             011234566788888776544  335789999999998887773  3


Q ss_pred             CCCcEEEEeCCCCcEE-EEecCCCCEEEeee
Q 040370          197 IGAPRWIEHSPAEAAF-ITCGTDRSVRFWKE  226 (228)
Q Consensus       197 ~~~v~~~~~~~~~~~l-~s~~~dg~i~vwd~  226 (228)
                      ...+.+++|+|+|++| ++++.|+.|++||+
T Consensus       243 ~~~~~~va~spdg~~l~va~~~~~~i~v~D~  273 (301)
T d1l0qa2         243 GPDPAGIAVTPDGKKVYVALSFCNTVSVIDT  273 (301)
T ss_dssp             CSSEEEEEECTTSSEEEEEETTTTEEEEEET
T ss_pred             CCCEEEEEEeCCCCEEEEEECCCCeEEEEEC
Confidence            4568999999999976 67888999999996

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.94  E-value=9.8e-25  Score=158.30  Aligned_cols=217  Identities=11%  Similarity=0.088  Sum_probs=162.2

Q ss_pred             CCcCCccccceeEEEeecCcceEEEEEeCCCCEE-EEecCCCeEEEEEcccceEEeeecccee-eeccceeeEEeCCCCC
Q 040370            1 FFDFSKATAKRAFRVIQDTHNVRSVSFHPSGDFL-LAGTDHPIAHLYDVNTFQCYLSANVPEI-SVNGAINQVRYSSTGG   78 (228)
Q Consensus         1 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~d~~i~vw~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~   78 (228)
                      |||..+.+....+....+...+.+++|+|||+++ ++++.++.|.+||+.+++.+........ .+...+..++|+|+++
T Consensus        15 v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~v~~s~dg~   94 (337)
T d1pbyb_          15 VIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGK   94 (337)
T ss_dssp             EEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSS
T ss_pred             EEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccccceeeEEEcCCCc
Confidence            5788765544444443455678899999999987 4667899999999999988766654321 1134567899999999


Q ss_pred             eEEEEe------------cCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEE
Q 040370           79 MYVTAS------------KDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQ  146 (228)
Q Consensus        79 ~l~~~~------------~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~  146 (228)
                      +++++.            .+..+.+||..+++....+..   ...+..++|+|+++++++++.+  +.+||..+++....
T Consensus        95 ~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~---~~~~~~~~~s~dg~~l~~~~~~--~~~~d~~~~~~~~~  169 (337)
T d1pbyb_          95 TLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA---PRQITMLAWARDGSKLYGLGRD--LHVMDPEAGTLVED  169 (337)
T ss_dssp             EEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC---CSSCCCEEECTTSSCEEEESSS--EEEEETTTTEEEEE
T ss_pred             EEEEeecCCcceeeeccccccceeeccccCCeEEEeccc---cCCceEEEEcCCCCEEEEEcCC--cceeeeecCcEEEE
Confidence            988776            357899999999988888765   3457789999999999988654  67888877655443


Q ss_pred             Eecc----------------------------------------------------------------eeeeeeeEEEEC
Q 040370          147 YLGA----------------------------------------------------------------THTQLRFQAVFN  162 (228)
Q Consensus       147 ~~~~----------------------------------------------------------------~~~~~~~~~~~~  162 (228)
                      +...                                                                .+........++
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (337)
T d1pbyb_         170 KPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVN  249 (337)
T ss_dssp             ECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEEC
T ss_pred             eecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecCCCcceEEEEec
Confidence            3110                                                                011122344566


Q ss_pred             CCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370          163 DTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEI  227 (228)
Q Consensus       163 ~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~  227 (228)
                      +++.+++..   ++.+++||+++++.+..+  .+...+.+++|+|+|++|++++.|+.|++||+.
T Consensus       250 ~~~~~~~~~---~~~i~v~d~~~~~~~~~~--~~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~  309 (337)
T d1pbyb_         250 PAKTRAFGA---YNVLESFDLEKNASIKRV--PLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAE  309 (337)
T ss_dssp             TTSSEEEEE---ESEEEEEETTTTEEEEEE--ECSSCCCEEEECTTSCEEEEESBSSEEEEEETT
T ss_pred             ccceEEEEc---cccEEEEECCCCcEEEEE--cCCCCEEEEEECCCCCEEEEEeCCCcEEEEECC
Confidence            677666553   488999999999998887  355678999999999999999999999999963

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.93  E-value=2.1e-23  Score=156.71  Aligned_cols=193  Identities=11%  Similarity=-0.005  Sum_probs=149.2

Q ss_pred             CCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCCCcee--eEEec-
Q 040370           29 PSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANCV--RSIVG-  105 (228)
Q Consensus        29 ~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~--~~~~~-  105 (228)
                      ++.-++++.+.+|.|.|||.++++.+..+..     ...+..++|+|||+++++++.||.+++||+.+++..  ..+.. 
T Consensus        30 ~~~~~~v~~~d~g~v~v~D~~t~~v~~~~~~-----g~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~  104 (432)
T d1qksa2          30 LENLFSVTLRDAGQIALIDGSTYEIKTVLDT-----GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIG  104 (432)
T ss_dssp             GGGEEEEEETTTTEEEEEETTTCCEEEEEEC-----SSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECC
T ss_pred             CCcEEEEEEcCCCEEEEEECCCCcEEEEEeC-----CCCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecC
Confidence            3334468899999999999999998887764     335899999999999999999999999999887643  33332 


Q ss_pred             ccccceeEEEEECCCCCEE-EEeeCCCeEEEEEccCCeeEEEEecce---------eeeeeeEEEECCCCcEEEEeeCCC
Q 040370          106 AHGTAEATSANFTKDQRFV-LSCGKDSTVKLWEVSSGRLVKQYLGAT---------HTQLRFQAVFNDTEEFVLSIDEPS  175 (228)
Q Consensus       106 ~~~~~~i~~~~~~~~~~~l-~~~~~d~~i~~wd~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~d  175 (228)
                      ..+...+.+..|+|||++| ++++.++.|++||..+++.+..+..+.         .......+.++|++..++++...+
T Consensus       105 ~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~  184 (432)
T d1qksa2         105 SEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKET  184 (432)
T ss_dssp             SEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTT
T ss_pred             CCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccC
Confidence            1224455666788899986 678889999999999999888776432         122345678899999888888878


Q ss_pred             CeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecC-CCCEEEeee
Q 040370          176 NEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGT-DRSVRFWKE  226 (228)
Q Consensus       176 ~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-dg~i~vwd~  226 (228)
                      +.|.+||..+.+........+...+..++|+|+|+++++++. ++.+.++|.
T Consensus       185 ~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~  236 (432)
T d1qksa2         185 GKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDT  236 (432)
T ss_dssp             TEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEET
T ss_pred             CeEEEEEccCCCcceEEEEcccCccccceECCCCCEEEEeccccceEEEeec
Confidence            999999998877655443356667899999999998777664 456777764

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.92  E-value=7.5e-23  Score=153.69  Aligned_cols=185  Identities=10%  Similarity=0.038  Sum_probs=137.2

Q ss_pred             CCcCCccccceeEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEE--eeeccceeeeccceeeEEeCCCCC
Q 040370            1 FFDFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCY--LSANVPEISVNGAINQVRYSSTGG   78 (228)
Q Consensus         1 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~   78 (228)
                      |||....+....+.  .+ ..+..++|+|||+++++++.|+.|++||+.+++..  ........+ .+.+.+..|+|||+
T Consensus        46 v~D~~t~~v~~~~~--~g-~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~-~~~~~s~~~SpDG~  121 (432)
T d1qksa2          46 LIDGSTYEIKTVLD--TG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEA-RSIETSKMEGWEDK  121 (432)
T ss_dssp             EEETTTCCEEEEEE--CS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEE-EEEEECCSTTCTTT
T ss_pred             EEECCCCcEEEEEe--CC-CCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCC-CCeEEecccCCCCC
Confidence            46766444333332  33 57999999999999999999999999999887632  233332233 56677788999999


Q ss_pred             eE-EEEecCCeEEEEeCCCCceeeEEeccc---------ccceeEEEEECCCCCEE-EEeeCCCeEEEEEccCCeeEEEE
Q 040370           79 MY-VTASKDGAIRLWDGVSANCVRSIVGAH---------GTAEATSANFTKDQRFV-LSCGKDSTVKLWEVSSGRLVKQY  147 (228)
Q Consensus        79 ~l-~~~~~dg~v~iwd~~~~~~~~~~~~~~---------~~~~i~~~~~~~~~~~l-~~~~~d~~i~~wd~~~~~~~~~~  147 (228)
                      ++ ++++.++.|++||..+++.+..+..+.         .......+.++|++..+ ++...++.|.+||..+.+.....
T Consensus       122 ~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~  201 (432)
T d1qksa2         122 YAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTT  201 (432)
T ss_dssp             EEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEE
T ss_pred             EEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCcceEE
Confidence            76 678889999999999999887775431         13456678899998875 56667899999999887655433


Q ss_pred             ecceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeE
Q 040370          148 LGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVA  190 (228)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~  190 (228)
                      ... .......+.++|+++++++++..++.+.++|..+++...
T Consensus       202 ~i~-~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~  243 (432)
T d1qksa2         202 EIS-AERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVA  243 (432)
T ss_dssp             EEE-CCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEE
T ss_pred             EEc-ccCccccceECCCCCEEEEeccccceEEEeecccceEEE
Confidence            321 344567899999999999888877899999987665443

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=1.2e-23  Score=149.81  Aligned_cols=151  Identities=13%  Similarity=0.230  Sum_probs=117.1

Q ss_pred             EEEeCCCCEEEEecCCC-eEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCCCceeeEE
Q 040370           25 VSFHPSGDFLLAGTDHP-IAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSI  103 (228)
Q Consensus        25 ~~~~~~~~~l~~~~~d~-~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~  103 (228)
                      .+++|+++.+++++.++ .+++|++...+........   +...+++++|+|++++|++|+.||.|++||+.+++.....
T Consensus       124 ~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~---~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~  200 (287)
T d1pgua2         124 SAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTP---LRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSR  200 (287)
T ss_dssp             EEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSC---CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECC
T ss_pred             eeeeccCcceeeeccccceeeeeeccccceeeeeeec---cCCceeEEEeccCccccccccccccccceeeccccccccc
Confidence            35567778888777664 7999999876654443322   2678999999999999999999999999999988765543


Q ss_pred             ecccccceeEEEEECCC----------CCEEEEeeCCCeEEEEEccCC-eeEEEEecceeeeeeeEEEECCCCcEEEEee
Q 040370          104 VGAHGTAEATSANFTKD----------QRFVLSCGKDSTVKLWEVSSG-RLVKQYLGATHTQLRFQAVFNDTEEFVLSID  172 (228)
Q Consensus       104 ~~~~~~~~i~~~~~~~~----------~~~l~~~~~d~~i~~wd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (228)
                      ...| ...|.+++|+|.          +.++++|+.|++|++||++++ +.+..+.+  |...+.++.|+|++. +++++
T Consensus       201 ~~~h-~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~--h~~~V~~v~~~~~~~-l~s~g  276 (287)
T d1pgua2         201 WAFR-TSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNA--HKDGVNNLLWETPST-LVSSG  276 (287)
T ss_dssp             SCCC-SSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTS--STTCEEEEEEEETTE-EEEEE
T ss_pred             cccc-ccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCC--CCCCeEEEEECCCCE-EEEEE
Confidence            3332 778999999875          468999999999999999774 44444444  677889999998764 66655


Q ss_pred             CCCCeEEEEEc
Q 040370          173 EPSNEIVIWDA  183 (228)
Q Consensus       173 ~~d~~i~i~d~  183 (228)
                      . |+.|++|++
T Consensus       277 ~-D~~v~iW~i  286 (287)
T d1pgua2         277 A-DACIKRWNV  286 (287)
T ss_dssp             T-TSCEEEEEE
T ss_pred             C-CCeEEEEEE
Confidence            5 899999996

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.92  E-value=1.2e-22  Score=147.26  Aligned_cols=225  Identities=13%  Similarity=0.145  Sum_probs=155.3

Q ss_pred             CCcCCccccceeEEEeecCcceEEEEEeCCCCEEEE-ecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCe
Q 040370            1 FFDFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLLA-GTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGM   79 (228)
Q Consensus         1 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~   79 (228)
                      |||++.......++...|...+..++|+|||++|++ +..|+.|++|++............. .....+..++|+|+|++
T Consensus        18 v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~-~~~~~p~~l~~spDg~~   96 (333)
T d1ri6a_          18 VWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAES-ALPGSLTHISTDHQGQF   96 (333)
T ss_dssp             EEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEE-ECSSCCSEEEECTTSSE
T ss_pred             EEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeec-ccCCCceEEEEcCCCCE
Confidence            578776555566777789999999999999999865 4558999999998654332222221 12456788999999999


Q ss_pred             EEEEec-CCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeC-CCeEEEEEccCCeeEEEEec--------
Q 040370           80 YVTASK-DGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGK-DSTVKLWEVSSGRLVKQYLG--------  149 (228)
Q Consensus        80 l~~~~~-dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~~i~~wd~~~~~~~~~~~~--------  149 (228)
                      +++++. ++.+.+|+..............+...+.++.++|+++++++++. +..|.+|+............        
T Consensus        97 l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g  176 (333)
T d1ri6a_          97 VFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEG  176 (333)
T ss_dssp             EEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTT
T ss_pred             EeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCcceeeeceeeeeecC
Confidence            988875 67899999877765555444333566788899999998777764 45688888654221100000        


Q ss_pred             -------------------------------------------------ceeeeeeeEEEECCCCcEEEEeeCCCCeEEE
Q 040370          150 -------------------------------------------------ATHTQLRFQAVFNDTEEFVLSIDEPSNEIVI  180 (228)
Q Consensus       150 -------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i  180 (228)
                                                                       ...........++++++++++.+..++.+.+
T Consensus       177 ~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~  256 (333)
T d1ri6a_         177 AGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITV  256 (333)
T ss_dssp             CCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred             CCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCceeeecccCCeEEE
Confidence                                                             0001122345678888888888877889999


Q ss_pred             EEcCCcceeEEee--cCCCCCcEEEEeCCCCcEEEEec-CCCCEEEeee
Q 040370          181 WDALTAEKVAKWS--SNHIGAPRWIEHSPAEAAFITCG-TDRSVRFWKE  226 (228)
Q Consensus       181 ~d~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~s~~-~dg~i~vwd~  226 (228)
                      |++..........  ......+..++|+|+|++|++++ .++.|++|++
T Consensus       257 ~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~i  305 (333)
T d1ri6a_         257 FSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEI  305 (333)
T ss_dssp             EEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEE
T ss_pred             EEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEEECCCCeEEEEEE
Confidence            9887654333321  23445678899999999877665 5688999975

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.92  E-value=3.5e-23  Score=150.57  Aligned_cols=196  Identities=11%  Similarity=0.038  Sum_probs=142.7

Q ss_pred             EEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeE-EEEecCCeEEEEeCCCCceeeEE
Q 040370           25 VSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMY-VTASKDGAIRLWDGVSANCVRSI  103 (228)
Q Consensus        25 ~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~dg~v~iwd~~~~~~~~~~  103 (228)
                      ++|++++++|++++.++.|.+||+++++.+.....+.   ...+.+++|+|||+++ ++++.++.|.+||+.+++....+
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~---~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~   78 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPD---KFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHA   78 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSS---CCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCC---CCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeee
Confidence            4789999999999999999999999999887766432   4567899999999987 55667899999999999888777


Q ss_pred             ecccc----cceeEEEEECCCCCEEEEee------------CCCeEEEEEccCCeeE-----------------------
Q 040370          104 VGAHG----TAEATSANFTKDQRFVLSCG------------KDSTVKLWEVSSGRLV-----------------------  144 (228)
Q Consensus       104 ~~~~~----~~~i~~~~~~~~~~~l~~~~------------~d~~i~~wd~~~~~~~-----------------------  144 (228)
                      .....    ...+..++|+|||+++++++            .++.+.+||..+++..                       
T Consensus        79 ~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (346)
T d1jmxb_          79 NLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSL  158 (346)
T ss_dssp             ESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCE
T ss_pred             cccccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCEE
Confidence            64321    12345789999999887765            3566777776543211                       


Q ss_pred             ------------------EEEecc--------------------------------------------------------
Q 040370          145 ------------------KQYLGA--------------------------------------------------------  150 (228)
Q Consensus       145 ------------------~~~~~~--------------------------------------------------------  150 (228)
                                        ..+...                                                        
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (346)
T d1jmxb_         159 YVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLK  238 (346)
T ss_dssp             EEESSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETT
T ss_pred             EEeCCcceEEEccCCCEEEEEecCCCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECC
Confidence                              111000                                                        


Q ss_pred             ----------eeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCC
Q 040370          151 ----------THTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRS  220 (228)
Q Consensus       151 ----------~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~  220 (228)
                                .+........+++++.+++...  ++.+.+||..+++.+..+.  +...+.+++|+|||++|++++.||.
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~v~d~~~~~~~~~~~--~~~~~~~va~s~DG~~l~v~~~d~~  314 (346)
T d1jmxb_         239 TGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAAN--LDHTYYCVAFDKKGDKLYLGGTFND  314 (346)
T ss_dssp             TCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEE--CSSCCCEEEECSSSSCEEEESBSSE
T ss_pred             CCceEEEEeecccceeEEEEEeCCCCEEEEec--CCeEEEEECCCCcEEEEEc--CCCCEEEEEEcCCCCEEEEEeCCCc
Confidence                      0000112233445555555443  3689999999998888774  3457899999999999999999999


Q ss_pred             EEEeeec
Q 040370          221 VRFWKEI  227 (228)
Q Consensus       221 i~vwd~~  227 (228)
                      |++||+.
T Consensus       315 v~v~D~~  321 (346)
T d1jmxb_         315 LAVFNPD  321 (346)
T ss_dssp             EEEEETT
T ss_pred             EEEEECc
Confidence            9999964

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=4.7e-23  Score=149.26  Aligned_cols=162  Identities=18%  Similarity=0.397  Sum_probs=126.6

Q ss_pred             eEEEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEE
Q 040370           12 AFRVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRL   91 (228)
Q Consensus        12 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i   91 (228)
                      ...+.+|...+..+.+  ++.++++|+.||.|++||++.++.+.....+    ...+.++.++  +++|++|+.||.|++
T Consensus       170 ~~~~~~~~~~~~~~~~--~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~----~~~v~~~~~~--~~~l~s~s~d~~i~i  241 (342)
T d2ovrb2         170 LHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGH----QSLTSGMELK--DNILVSGNADSTVKI  241 (342)
T ss_dssp             EEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCC----CSCEEEEEEE--TTEEEEEETTSCEEE
T ss_pred             eEEEcCcccccccccC--CCCEEEEEeCCCeEEEeecccceeeeEeccc----ccceeEEecC--CCEEEEEcCCCEEEE
Confidence            4445567666665544  7889999999999999999998877655432    6678877775  569999999999999


Q ss_pred             EeCCCCceeeEEeccc-ccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEec---ceeeeeeeEEEECCCCcE
Q 040370           92 WDGVSANCVRSIVGAH-GTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLG---ATHTQLRFQAVFNDTEEF  167 (228)
Q Consensus        92 wd~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~  167 (228)
                      ||+...+....+..+. +...+.++.++  ++++++|+.||.|++||+++++.+..+..   ..+...+.++.|+|++.+
T Consensus       242 wd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~~~~  319 (342)
T d2ovrb2         242 WDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLV  319 (342)
T ss_dssp             EETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEE
T ss_pred             EecccccccccccccceeeeceeecccC--CCeeEEEcCCCEEEEEECCCCCEEEEEecccCCCCCCCEEEEEECCCCCE
Confidence            9999988887776542 24566666665  57899999999999999999998887753   235667899999999877


Q ss_pred             EEEeeCCCC----eEEEEEcC
Q 040370          168 VLSIDEPSN----EIVIWDAL  184 (228)
Q Consensus       168 ~~~~~~~d~----~i~i~d~~  184 (228)
                      +++++ .||    .|++||+.
T Consensus       320 la~g~-~dGt~~~~l~~~Df~  339 (342)
T d2ovrb2         320 CAVGS-RNGTEETKLLVLDFD  339 (342)
T ss_dssp             EEEEC-SSSSSCCEEEEEECC
T ss_pred             EEEEe-CCCCCeeEEEEEeCC
Confidence            76654 467    49999975

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.89  E-value=6.3e-21  Score=143.01  Aligned_cols=195  Identities=9%  Similarity=-0.004  Sum_probs=144.0

Q ss_pred             EeCC--CCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCCCceeeEE-
Q 040370           27 FHPS--GDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSI-  103 (228)
Q Consensus        27 ~~~~--~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~-  103 (228)
                      ++++  +-++++.+.||.|+|||+.+++.+..+..     ...+..++|+|||+++++++.|++|++||+.+++..... 
T Consensus        26 ~~~d~~~~~~V~~~~dg~v~vwD~~t~~~~~~l~~-----g~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~  100 (426)
T d1hzua2          26 NDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDT-----GYAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAE  100 (426)
T ss_dssp             SCCCGGGEEEEEETTTTEEEEEETTTCSEEEEEEC-----CSSEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEE
T ss_pred             ccCCCCeEEEEEEcCCCEEEEEECCCCcEEEEEeC-----CCCeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEE
Confidence            4444  33557788999999999999998877654     345889999999999999999999999999988754433 


Q ss_pred             -ecc-cccceeEEEEECCCCCEEEE-eeCCCeEEEEEccCCeeEEEEeccee---------eeeeeEEEECCCCcEEEEe
Q 040370          104 -VGA-HGTAEATSANFTKDQRFVLS-CGKDSTVKLWEVSSGRLVKQYLGATH---------TQLRFQAVFNDTEEFVLSI  171 (228)
Q Consensus       104 -~~~-~~~~~i~~~~~~~~~~~l~~-~~~d~~i~~wd~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~  171 (228)
                       ... .+...+.+++|+|||+++++ +..++.+++||..+++.......+..         ......+..++++..++..
T Consensus       101 i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~  180 (426)
T d1hzua2         101 IKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVN  180 (426)
T ss_dssp             EECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEE
T ss_pred             EeCCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEe
Confidence             221 12445667788899998754 45889999999999888777654321         2223456677777777777


Q ss_pred             eCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEec-CCCCEEEeee
Q 040370          172 DEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCG-TDRSVRFWKE  226 (228)
Q Consensus       172 ~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~-~dg~i~vwd~  226 (228)
                      ....+.+.+++.............+...+..+.|+|++++++++. .+..+.+++.
T Consensus       181 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~  236 (426)
T d1hzua2         181 VKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDS  236 (426)
T ss_dssp             ETTTTEEEEEECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEET
T ss_pred             cCCCCeEEEEEeccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeec
Confidence            666677888877766654443346778899999999999877776 4555777764

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.88  E-value=1e-19  Score=129.74  Aligned_cols=178  Identities=11%  Similarity=0.147  Sum_probs=144.2

Q ss_pred             EEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeE-EEEecCCeEEEEeCCCCceeeEEecccccceeE
Q 040370           35 LAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMY-VTASKDGAIRLWDGVSANCVRSIVGAHGTAEAT  113 (228)
Q Consensus        35 ~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~  113 (228)
                      ++++.|++|.+||+++++.+..+..     ...+..++|+|+|+++ ++++.++.|++||+.+++.+..+..+   ..+.
T Consensus         6 V~~~~~~~v~v~D~~t~~~~~~i~~-----g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~---~~~~   77 (301)
T d1l0qa2           6 IANSESDNISVIDVTSNKVTATIPV-----GSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAG---SSPQ   77 (301)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEEEC-----SSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECS---SSEE
T ss_pred             EEECCCCEEEEEECCCCeEEEEEEC-----CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeecc---cccc
Confidence            4677899999999999998776654     3457889999999977 56778999999999999999888764   3468


Q ss_pred             EEEECCCCCEEE-EeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEe
Q 040370          114 SANFTKDQRFVL-SCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKW  192 (228)
Q Consensus       114 ~~~~~~~~~~l~-~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~  192 (228)
                      .+.|++++..++ ++..++.+.+|+..+++....+..   ......+.++|++..++.++..++.+.+|+..+......+
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (301)
T d1l0qa2          78 GVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKT---GKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTV  154 (301)
T ss_dssp             EEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC---SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             ccccccccccccccccccceeeecccccceeeeeccc---cccceEEEeecCCCeeeeeeccccceeeeeccccceeeec
Confidence            899999988655 556778899999999988887764   3345678899999999988888899999999999888877


Q ss_pred             ecCCCCCcEEEEeCCCCcEEEEecCC-CCEEEee
Q 040370          193 SSNHIGAPRWIEHSPAEAAFITCGTD-RSVRFWK  225 (228)
Q Consensus       193 ~~~~~~~v~~~~~~~~~~~l~s~~~d-g~i~vwd  225 (228)
                        .+...+..+.++|++..+++++.+ +.+.+|+
T Consensus       155 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (301)
T d1l0qa2         155 --SVGRSPKGIAVTPDGTKVYVANFDSMSISVID  186 (301)
T ss_dssp             --ECCSSEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             --ccCCCceEEEeeccccceeeeccccccccccc
Confidence              344567889999999988877765 4455554

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.86  E-value=2.5e-19  Score=129.45  Aligned_cols=148  Identities=11%  Similarity=0.103  Sum_probs=116.0

Q ss_pred             CEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeE-EEEecCCeEEEEeCCCCceeeEEecccc--
Q 040370           32 DFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMY-VTASKDGAIRLWDGVSANCVRSIVGAHG--  108 (228)
Q Consensus        32 ~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~~~~dg~v~iwd~~~~~~~~~~~~~~~--  108 (228)
                      +++++++.|++|.|||+++++.+..+..+..  ...+.+++|+|||+++ ++++.++.|.+||+.+++.+..+..+..  
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~--~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~   79 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAVDKVITIADA--GPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEE   79 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTC--TTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTE
T ss_pred             eEEEEEcCCCEEEEEECCCCeEEEEEECCCC--CCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcc
Confidence            5899999999999999999998877655321  3457899999999987 5667899999999999998888765421  


Q ss_pred             -cceeEEEEECCCCCEEEEee------------CCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCC
Q 040370          109 -TAEATSANFTKDQRFVLSCG------------KDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPS  175 (228)
Q Consensus       109 -~~~i~~~~~~~~~~~l~~~~------------~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  175 (228)
                       ...+..++|+|++++++++.            .+..+.+||..+++....+..   ...+..+.++|++.++++++   
T Consensus        80 ~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~---~~~~~~~~~s~dg~~l~~~~---  153 (337)
T d1pbyb_          80 RVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA---PRQITMLAWARDGSKLYGLG---  153 (337)
T ss_dssp             EEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC---CSSCCCEEECTTSSCEEEES---
T ss_pred             cccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccc---cCCceEEEEcCCCCEEEEEc---
Confidence             22345789999999998776            357899999999988877764   34466788999999998864   


Q ss_pred             CeEEEEEcCCcc
Q 040370          176 NEIVIWDALTAE  187 (228)
Q Consensus       176 ~~i~i~d~~~~~  187 (228)
                      +.+.+||..+++
T Consensus       154 ~~~~~~d~~~~~  165 (337)
T d1pbyb_         154 RDLHVMDPEAGT  165 (337)
T ss_dssp             SSEEEEETTTTE
T ss_pred             CCcceeeeecCc
Confidence            346667765544

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.83  E-value=5e-18  Score=124.65  Aligned_cols=204  Identities=9%  Similarity=0.013  Sum_probs=138.6

Q ss_pred             eecCcceEEEEEeCCCCEEEEe-----cCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEe------
Q 040370           16 IQDTHNVRSVSFHPSGDFLLAG-----TDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTAS------   84 (228)
Q Consensus        16 ~~~~~~v~~~~~~~~~~~l~~~-----~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~------   84 (228)
                      ..+..++..++++|+++.+++.     +..+.|.+||..+++.+..+..      +....++|+|||+++++++      
T Consensus        17 ~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~------~~~~~~a~SpDG~~l~va~~~~~~~   90 (373)
T d2madh_          17 GAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNG------GFLPNPVAAHSGSEFALASTSFSRI   90 (373)
T ss_pred             ccCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeC------CCCccEEEcCCCCEEEEEeecCCcc
Confidence            3578899999999999998764     2346799999999988776542      2234699999999998875      


Q ss_pred             ----cCCeEEEEeCCCCceeeEEeccc---------------------------------------------ccceeEEE
Q 040370           85 ----KDGAIRLWDGVSANCVRSIVGAH---------------------------------------------GTAEATSA  115 (228)
Q Consensus        85 ----~dg~v~iwd~~~~~~~~~~~~~~---------------------------------------------~~~~i~~~  115 (228)
                          .++.|.+||..+++....+..+.                                             ......++
T Consensus        91 ~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (373)
T d2madh_          91 AKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLLSSPTCY  170 (373)
T ss_pred             cccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEEeccceeE
Confidence                45789999999887654442211                                             01123355


Q ss_pred             EECCCCCE-EEEeeCCCeEEEEEccCCeeEEEEecce------------------------e------------------
Q 040370          116 NFTKDQRF-VLSCGKDSTVKLWEVSSGRLVKQYLGAT------------------------H------------------  152 (228)
Q Consensus       116 ~~~~~~~~-l~~~~~d~~i~~wd~~~~~~~~~~~~~~------------------------~------------------  152 (228)
                      .++|+++. +++.+.|+.+.+||...++.........                        .                  
T Consensus       171 ~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  250 (373)
T d2madh_         171 HIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKA  250 (373)
T ss_pred             EEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCceEEEecCCceEEEEEcCCCeEEEEE
Confidence            67777764 4677889999999987654432211000                        0                  


Q ss_pred             ---------------eeeeeEEEECCCCcEEEE---------eeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCC
Q 040370          153 ---------------TQLRFQAVFNDTEEFVLS---------IDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPA  208 (228)
Q Consensus       153 ---------------~~~~~~~~~~~~~~~~~~---------~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~  208 (228)
                                     ........+++++..++.         ....++.+.+||..+++.+..+  .+...+..++|+||
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~--~~~~~~~~~a~spD  328 (373)
T d2madh_         251 PIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQI--SLGHDVDAISVAQD  328 (373)
T ss_pred             eeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEEEe--cCCCCeeEEEECCC
Confidence                           000011233344443332         2233578899999999988876  46677899999999


Q ss_pred             Cc--EEEEecCCCCEEEeeec
Q 040370          209 EA--AFITCGTDRSVRFWKEI  227 (228)
Q Consensus       209 ~~--~l~s~~~dg~i~vwd~~  227 (228)
                      |+  ++++++.|+.|++||+.
T Consensus       329 G~~~l~vt~~~d~~v~v~D~~  349 (373)
T d2madh_         329 GGPDLYALSAGTEVLHIYDAG  349 (373)
T ss_pred             CCEEEEEEeCCCCeEEEEECC
Confidence            98  45688999999999974

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.83  E-value=8.5e-19  Score=127.85  Aligned_cols=204  Identities=13%  Similarity=0.084  Sum_probs=139.8

Q ss_pred             eEEEEEeCCCCEEEEec----------CCCeEEEEEcccceEEeeeccceee---eccceeeEEeCCCCCeEEEEe--cC
Q 040370           22 VRSVSFHPSGDFLLAGT----------DHPIAHLYDVNTFQCYLSANVPEIS---VNGAINQVRYSSTGGMYVTAS--KD   86 (228)
Q Consensus        22 v~~~~~~~~~~~l~~~~----------~d~~i~vw~~~~~~~~~~~~~~~~~---~~~~i~~~~~~~~~~~l~~~~--~d   86 (228)
                      ...++|+|||++|++++          .++.|++||+.+++..........+   .......++|+|+++.++.++  .+
T Consensus        49 ~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~  128 (355)
T d2bbkh_          49 LPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPA  128 (355)
T ss_dssp             SCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSS
T ss_pred             CCceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCC
Confidence            33799999999888643          4789999999999877665443221   123346789999999887764  46


Q ss_pred             CeEEEEeCCCCceeeEEecccc-------------------------------------------cceeEEEEECCCCCE
Q 040370           87 GAIRLWDGVSANCVRSIVGAHG-------------------------------------------TAEATSANFTKDQRF  123 (228)
Q Consensus        87 g~v~iwd~~~~~~~~~~~~~~~-------------------------------------------~~~i~~~~~~~~~~~  123 (228)
                      ..+.+|+..+++....+.....                                           ...+....+.+++..
T Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (355)
T d2bbkh_         129 PAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGR  208 (355)
T ss_dssp             CEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTE
T ss_pred             ceeeeeecCCCcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEecccccceecceeeeccccCCCCe
Confidence            7899999988876655443210                                           001112334445566


Q ss_pred             EEEeeCCCeEEEEEccCCeeEEE--Eecc--------eeeeeeeEEEECCCCcEEEEeeCC---------CCeEEEEEcC
Q 040370          124 VLSCGKDSTVKLWEVSSGRLVKQ--YLGA--------THTQLRFQAVFNDTEEFVLSIDEP---------SNEIVIWDAL  184 (228)
Q Consensus       124 l~~~~~d~~i~~wd~~~~~~~~~--~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~---------d~~i~i~d~~  184 (228)
                      ++.++.++.+++|++..++....  ...+        ........+.+++++..++.....         ...|.+||..
T Consensus       209 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~  288 (355)
T d2bbkh_         209 LVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAK  288 (355)
T ss_dssp             EEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETT
T ss_pred             EEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCC
Confidence            77778899999999987653221  1110        012223457788888887765432         2479999999


Q ss_pred             CcceeEEeecCCCCCcEEEEeCCCCc--EEEEecCCCCEEEeeec
Q 040370          185 TAEKVAKWSSNHIGAPRWIEHSPAEA--AFITCGTDRSVRFWKEI  227 (228)
Q Consensus       185 ~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~s~~~dg~i~vwd~~  227 (228)
                      +++.+..+.  +...+.+++|+|||+  ++++++.|+.|.+||+.
T Consensus       289 t~~~~~~~~--~~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~  331 (355)
T d2bbkh_         289 TGERLAKFE--MGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAE  331 (355)
T ss_dssp             TCCEEEEEE--EEEEECEEEECCSSSCEEEEEETTTTEEEEEETT
T ss_pred             CCcEEEEec--CCCCEEEEEEcCCCCeEEEEEECCCCEEEEEECC
Confidence            999888773  345688999999997  45677889999999963

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.80  E-value=1.6e-17  Score=119.90  Aligned_cols=192  Identities=11%  Similarity=0.115  Sum_probs=136.7

Q ss_pred             EEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEe-cCCeEEEEeCCCCceeeEEecc-cccc
Q 040370           33 FLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTAS-KDGAIRLWDGVSANCVRSIVGA-HGTA  110 (228)
Q Consensus        33 ~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~v~iwd~~~~~~~~~~~~~-~~~~  110 (228)
                      .+++++.|++|++|+++........+.  ..+.+.+..++|+|||++|++++ .|+.|++|++........+..+ ....
T Consensus         6 v~v~~~~~~~I~v~~~~~~~~l~~~~~--~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~   83 (333)
T d1ri6a_           6 VYIASPESQQIHVWNLNHEGALTLTQV--VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG   83 (333)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEE--EECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS
T ss_pred             EEEECCCCCcEEEEEEcCCCCeEEEEE--EcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCC
Confidence            346778999999999976543332222  12267899999999999886554 5899999999866543333221 1244


Q ss_pred             eeEEEEECCCCCEEEEeeC-CCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCccee
Q 040370          111 EATSANFTKDQRFVLSCGK-DSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKV  189 (228)
Q Consensus       111 ~i~~~~~~~~~~~l~~~~~-d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~  189 (228)
                      .+..++|+|||++|++++. ++.+.+|+..............+...+..+.++|++++++.++..+..+.+|+.......
T Consensus        84 ~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~  163 (333)
T d1ri6a_          84 SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHL  163 (333)
T ss_dssp             CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCE
T ss_pred             CceEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCcc
Confidence            5678999999999998875 678999998877665555443355566788999999999998887789999998765433


Q ss_pred             EE-----eecCCCCCcEEEEeCCCCcEEEEec-CCCCEEEeee
Q 040370          190 AK-----WSSNHIGAPRWIEHSPAEAAFITCG-TDRSVRFWKE  226 (228)
Q Consensus       190 ~~-----~~~~~~~~v~~~~~~~~~~~l~s~~-~dg~i~vwd~  226 (228)
                      ..     ...........++|++++.+++... ..+...+|+.
T Consensus       164 ~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~  206 (333)
T d1ri6a_         164 VAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWEL  206 (333)
T ss_dssp             EEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEES
T ss_pred             eeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEee
Confidence            22     1224455678899999988776554 4556666653

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.77  E-value=4.3e-17  Score=117.93  Aligned_cols=187  Identities=11%  Similarity=0.078  Sum_probs=124.4

Q ss_pred             CCcCCccccceeEEEeecCcceEEEEEeCCCCEEE-EecCCCeEEEEEcccceEEeeeccce--eeeccceeeEEeCCCC
Q 040370            1 FFDFSKATAKRAFRVIQDTHNVRSVSFHPSGDFLL-AGTDHPIAHLYDVNTFQCYLSANVPE--ISVNGAINQVRYSSTG   77 (228)
Q Consensus         1 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~d~~i~vw~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~   77 (228)
                      |||+.+.+....++ ..|...+.+++|+|||++++ ++..++.|.+||+.+++.........  ..+...+..++|+|+|
T Consensus        22 v~D~~t~~~~~t~~-~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~~~~~~~v~~s~DG  100 (346)
T d1jmxb_          22 VVDVASDTVYKSCV-MPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDG  100 (346)
T ss_dssp             EEETTTTEEEEEEE-CSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTS
T ss_pred             EEECCCCCEEEEEE-cCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeecccccccccCCceEEEEEecCC
Confidence            47777543322222 24566788999999999874 56688999999999998776554321  1113346778888888


Q ss_pred             CeEEEEe------------cCCeEEEEeCCC-----------------------------------------CceeeEEe
Q 040370           78 GMYVTAS------------KDGAIRLWDGVS-----------------------------------------ANCVRSIV  104 (228)
Q Consensus        78 ~~l~~~~------------~dg~v~iwd~~~-----------------------------------------~~~~~~~~  104 (228)
                      +++++++            .++.+.+||..+                                         ++....+.
T Consensus       101 ~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (346)
T d1jmxb_         101 KEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALP  180 (346)
T ss_dssp             SEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEEESSSEEEECTTTCCEEEEEC
T ss_pred             CEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCEEEEeCCcceEEEccCCCEEEEEe
Confidence            8776553            244555555332                                         22222111


Q ss_pred             cc------------------------------------------------------------------cccceeEEEEEC
Q 040370          105 GA------------------------------------------------------------------HGTAEATSANFT  118 (228)
Q Consensus       105 ~~------------------------------------------------------------------~~~~~i~~~~~~  118 (228)
                      .+                                                                  .+...+..+.++
T Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (346)
T d1jmxb_         181 LRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRS  260 (346)
T ss_dssp             STTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEEC
T ss_pred             cCCCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCCCceEEEEeecccceeEEEEEe
Confidence            00                                                                  001233445566


Q ss_pred             CCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEee
Q 040370          119 KDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWS  193 (228)
Q Consensus       119 ~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~  193 (228)
                      +++.+++... ++.|++||+.+++.+..+..   ...+..++|+|+++++++++. |+.|++||.++++.+.++.
T Consensus       261 ~~~~~~~~~~-~~~v~v~d~~~~~~~~~~~~---~~~~~~va~s~DG~~l~v~~~-d~~v~v~D~~t~~~i~~i~  330 (346)
T d1jmxb_         261 PKDPNQIYGV-LNRLAKYDLKQRKLIKAANL---DHTYYCVAFDKKGDKLYLGGT-FNDLAVFNPDTLEKVKNIK  330 (346)
T ss_dssp             SSCTTEEEEE-ESEEEEEETTTTEEEEEEEC---SSCCCEEEECSSSSCEEEESB-SSEEEEEETTTTEEEEEEE
T ss_pred             CCCCEEEEec-CCeEEEEECCCCcEEEEEcC---CCCEEEEEEcCCCCEEEEEeC-CCcEEEEECccCCEEEEEE
Confidence            6666666554 35799999999988877753   345778999999999998766 7999999999999998873

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.73  E-value=5.5e-15  Score=108.18  Aligned_cols=182  Identities=10%  Similarity=0.037  Sum_probs=121.4

Q ss_pred             EEEEEeCCCCEEEEec----------CCCeEEEEEcccceEEeeeccce-------------------------------
Q 040370           23 RSVSFHPSGDFLLAGT----------DHPIAHLYDVNTFQCYLSANVPE-------------------------------   61 (228)
Q Consensus        23 ~~~~~~~~~~~l~~~~----------~d~~i~vw~~~~~~~~~~~~~~~-------------------------------   61 (228)
                      ..++|+|||++|++++          .++.|.+||..+++.......+.                               
T Consensus        69 ~~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~  148 (373)
T d2madh_          69 PNPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGP  148 (373)
T ss_pred             ccEEEcCCCCEEEEEeecCCcccccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCC
Confidence            3799999999999864          45789999999877543321110                               


Q ss_pred             ------------eeeccceeeEEeCCCCCe-EEEEecCCeEEEEeCCCCceeeEEeccc---------------------
Q 040370           62 ------------ISVNGAINQVRYSSTGGM-YVTASKDGAIRLWDGVSANCVRSIVGAH---------------------  107 (228)
Q Consensus        62 ------------~~~~~~i~~~~~~~~~~~-l~~~~~dg~v~iwd~~~~~~~~~~~~~~---------------------  107 (228)
                                  ..+.....++.++|+++. +++.+.|+.+.+|+...++.........                     
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (373)
T d2madh_         149 AVGLVVQGGSSDDQLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIV  228 (373)
T ss_pred             ceEEeeccCCeEEEEeccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCceEE
Confidence                        011223456778887764 4678889999999976654333221100                     


Q ss_pred             ------------------------------------ccceeEEEEECCCCCEE----------EEeeCCCeEEEEEccCC
Q 040370          108 ------------------------------------GTAEATSANFTKDQRFV----------LSCGKDSTVKLWEVSSG  141 (228)
Q Consensus       108 ------------------------------------~~~~i~~~~~~~~~~~l----------~~~~~d~~i~~wd~~~~  141 (228)
                                                          .......+++++++..+          ++...++.+.+||+.++
T Consensus       229 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~  308 (373)
T d2madh_         229 WPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVG  308 (373)
T ss_pred             EecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCC
Confidence                                                00011223444444433          34455678899999998


Q ss_pred             eeEEEEecceeeeeeeEEEECCCCcE-EEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCC
Q 040370          142 RLVKQYLGATHTQLRFQAVFNDTEEF-VLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPA  208 (228)
Q Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~  208 (228)
                      +.+..+.   ....+..+.|+|+++. +++++..|+.|++||+.+++.+..+ ..+......+++.++
T Consensus       309 ~~~~~~~---~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~-~~~g~~P~~l~~~~~  372 (373)
T d2madh_         309 QTSSQIS---LGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQST-VELGSGPQVLSVMNE  372 (373)
T ss_pred             cEEEEec---CCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEE-CCCCCCCcEEEEecC
Confidence            8887775   3445678999999986 4566777899999999999999988 566667777776543

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.70  E-value=3.2e-15  Score=108.61  Aligned_cols=195  Identities=7%  Similarity=-0.064  Sum_probs=133.2

Q ss_pred             ceEEEEEeCCCCEEEEec-----CCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEE----------ec
Q 040370           21 NVRSVSFHPSGDFLLAGT-----DHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTA----------SK   85 (228)
Q Consensus        21 ~v~~~~~~~~~~~l~~~~-----~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~----------~~   85 (228)
                      ++.-.+.+||++.+++..     .++.|.+||..+++.+....      .+....++|+|||++|++.          ..
T Consensus         3 p~~~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~------~g~~~~~a~SpDg~~l~v~~~~~~~~~~g~~   76 (355)
T d2bbkh_           3 PRILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMID------GGFLPNPVVADDGSFIAHASTVFSRIARGER   76 (355)
T ss_dssp             CCBCCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEE------ECSSCEEEECTTSSCEEEEEEEEEETTEEEE
T ss_pred             CcEeEeeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEE------CCCCCceEEcCCCCEEEEEeCCCccccccCC
Confidence            334445689999987653     45679999999998877654      3344579999999988764          34


Q ss_pred             CCeEEEEeCCCCceeeEEecccc-----cceeEEEEECCCCCEEEEee--CCCeEEEEEccCCeeEEEEecceeee----
Q 040370           86 DGAIRLWDGVSANCVRSIVGAHG-----TAEATSANFTKDQRFVLSCG--KDSTVKLWEVSSGRLVKQYLGATHTQ----  154 (228)
Q Consensus        86 dg~v~iwd~~~~~~~~~~~~~~~-----~~~i~~~~~~~~~~~l~~~~--~d~~i~~wd~~~~~~~~~~~~~~~~~----  154 (228)
                      |+.|++||+.+++....+..+..     ......++|+|++++++.+.  .+..+.+||..+++.+..+.......    
T Consensus        77 d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (355)
T d2bbkh_          77 TDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPT  156 (355)
T ss_dssp             EEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEE
T ss_pred             CCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEeec
Confidence            78999999999998877754321     12234578999999887664  56789999999998887775432111    


Q ss_pred             -eeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeeec
Q 040370          155 -LRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKEI  227 (228)
Q Consensus       155 -~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~~  227 (228)
                       ....+.+++++..++.....++.+.+++.....      ..+...+....+.+++..++.++.++.+.+|++.
T Consensus       157 ~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  224 (355)
T d2bbkh_         157 APDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFH------PEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLS  224 (355)
T ss_dssp             ETTEEEEEETTSCEEEEECCSSSCCEEEECCCCS------CTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECT
T ss_pred             CCcceEEEcCCCCEEEEEecCCCeEEEEeccccc------ceecceeeeccccCCCCeEEEecCCCeEEEEecC
Confidence             112344555555555544444555555443322      2334445566778888889999999999999863

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.68  E-value=1.6e-15  Score=111.20  Aligned_cols=202  Identities=9%  Similarity=-0.032  Sum_probs=127.5

Q ss_pred             EEEEeCCCCEEEEec----------CCCeEEEEEcccceEEeeeccceee---eccceeeEEeCCCCCeEEEEe-cCCeE
Q 040370           24 SVSFHPSGDFLLAGT----------DHPIAHLYDVNTFQCYLSANVPEIS---VNGAINQVRYSSTGGMYVTAS-KDGAI   89 (228)
Q Consensus        24 ~~~~~~~~~~l~~~~----------~d~~i~vw~~~~~~~~~~~~~~~~~---~~~~i~~~~~~~~~~~l~~~~-~dg~v   89 (228)
                      .++|+|||+.|++++          .|+.|.+||..+++.......+...   .......++|+|||++++++. .++.+
T Consensus        69 ~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v  148 (368)
T d1mdah_          69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAA  148 (368)
T ss_dssp             EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCE
T ss_pred             cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeE
Confidence            589999999998754          4678999999999877765433211   122345799999999988776 57999


Q ss_pred             EEEeCCCCceeeEEecccc-----cceeEEEEECCCCCEEEEee------------------------------------
Q 040370           90 RLWDGVSANCVRSIVGAHG-----TAEATSANFTKDQRFVLSCG------------------------------------  128 (228)
Q Consensus        90 ~iwd~~~~~~~~~~~~~~~-----~~~i~~~~~~~~~~~l~~~~------------------------------------  128 (228)
                      .+||+.+++....+..+..     ......+.+++++..++...                                    
T Consensus       149 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  228 (368)
T d1mdah_         149 AGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWA  228 (368)
T ss_dssp             EEEEETTTEEEEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEEC
T ss_pred             EEEECCCCcEeEEeeccCcceEccCCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEEEe
Confidence            9999999988777654321     01112233344433322221                                    


Q ss_pred             CCCeEEEEEccCCeeEEEEecc----------eeeeeeeEEEECCCCcEEEEeeCCC--------CeEEEEEcCCcceeE
Q 040370          129 KDSTVKLWEVSSGRLVKQYLGA----------THTQLRFQAVFNDTEEFVLSIDEPS--------NEIVIWDALTAEKVA  190 (228)
Q Consensus       129 ~d~~i~~wd~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~d--------~~i~i~d~~~~~~~~  190 (228)
                      ..+.++++++..+.........          ........+.+++++..++.....+        ..|.+||..+++.+.
T Consensus       229 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~  308 (368)
T d1mdah_         229 VASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSG  308 (368)
T ss_dssp             BSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEE
T ss_pred             cCCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeE
Confidence            1233444444333222111100          0111123466777777666543221        469999999999887


Q ss_pred             EeecCCCCCcEEEEeCCCCc--EEEEecCCCCEEEeeec
Q 040370          191 KWSSNHIGAPRWIEHSPAEA--AFITCGTDRSVRFWKEI  227 (228)
Q Consensus       191 ~~~~~~~~~v~~~~~~~~~~--~l~s~~~dg~i~vwd~~  227 (228)
                      .+.  +...+.+++|+|||+  +++++..|+.|++||..
T Consensus       309 ~~~--~~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~  345 (368)
T d1mdah_         309 PIS--NGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAA  345 (368)
T ss_dssp             CCE--EEEEECEEEECCSSSCEEEEEETTTTEEEEEESS
T ss_pred             Eec--CCCceeEEEECCCCCEEEEEEeCCCCeEEEEECC
Confidence            763  345788999999986  35677789999999963

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.61  E-value=1.7e-13  Score=101.09  Aligned_cols=200  Identities=8%  Similarity=0.037  Sum_probs=138.5

Q ss_pred             cCcceEEEEEeCCCCEEEEe-cCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCC--eEEEEecCC-------
Q 040370           18 DTHNVRSVSFHPSGDFLLAG-TDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGG--MYVTASKDG-------   87 (228)
Q Consensus        18 ~~~~v~~~~~~~~~~~l~~~-~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~l~~~~~dg-------   87 (228)
                      |.........+|||++|++. ..++.|.++|+++++.......+.   ...+..++|+|+++  +++..+.+.       
T Consensus        70 hhP~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~---g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg  146 (441)
T d1qnia2          70 HHPHISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDKITHIPN---VQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDG  146 (441)
T ss_dssp             CCCEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECTT---CCCEEEEEECCSSBCCEEEEEECSCEESSCSS
T ss_pred             cCCCcceecccCCCCEEEEEcCCCCEEEEEECCCCcEeeEEecCC---CCCccceEEeccCCEEEEEeccCCcccccCcc
Confidence            33445566678999998655 578899999999998877665543   45788999999988  444444332       


Q ss_pred             ----------eEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCC---------------------------
Q 040370           88 ----------AIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKD---------------------------  130 (228)
Q Consensus        88 ----------~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---------------------------  130 (228)
                                .+..+|..+.+....+..   ......+.++|+|+++++.+.+                           
T Consensus       147 ~~~~~~~~~~~~~~iD~~t~~v~~qI~v---~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~  223 (441)
T d1qnia2         147 TDFSLDNSYTMFTAIDAETMDVAWQVIV---DGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIA  223 (441)
T ss_dssp             SCCCGGGEEEEEEEEETTTCSEEEEEEE---SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHH
T ss_pred             cccccccccceEEeecCccceeeEEEec---CCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceE
Confidence                      235578888877777765   3356789999999998877644                           


Q ss_pred             --------------CeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeE------
Q 040370          131 --------------STVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVA------  190 (228)
Q Consensus       131 --------------~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~------  190 (228)
                                    +.+.+++....+.+..+..   ......+.++|+|+++++++..++++.+||+.+.+...      
T Consensus       224 ~~~~dGk~~~v~~~~v~vvd~~~~~~v~~~IPv---gksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~  300 (441)
T d1qnia2         224 AAVKAGNFKTIGDSKVPVVDGRGESEFTRYIPV---PKNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIEL  300 (441)
T ss_dssp             HHHHTTCCBCCTTCCCCEEECSSSCSSEEEECC---BSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCG
T ss_pred             EEecCCCEEEeCCCCcEEEEcccCCceEEEEeC---CCCccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCc
Confidence                          2333333333334444432   22345688999999999999999999999987643210      


Q ss_pred             ----EeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeee
Q 040370          191 ----KWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKE  226 (228)
Q Consensus       191 ----~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~  226 (228)
                          .......-.....+|+++|..+.+...|..|..|++
T Consensus       301 ~~~~~~~~~~glgplh~~fd~~g~~yts~~~ds~v~kw~~  340 (441)
T d1qnia2         301 RDTIVAEPELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNI  340 (441)
T ss_dssp             GGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEEEEEH
T ss_pred             ceEEEeecccccCcccceecCCceEEEcccccceEEEecc
Confidence                000111123455689999999999999999999985

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.55  E-value=1.6e-12  Score=95.87  Aligned_cols=188  Identities=10%  Similarity=-0.012  Sum_probs=129.8

Q ss_pred             EEEecCCCeEEEEEcccceEEeeecccee--------------------------eeccceeeEEeCCCCCeEEEE-ecC
Q 040370           34 LLAGTDHPIAHLYDVNTFQCYLSANVPEI--------------------------SVNGAINQVRYSSTGGMYVTA-SKD   86 (228)
Q Consensus        34 l~~~~~d~~i~vw~~~~~~~~~~~~~~~~--------------------------~~~~~i~~~~~~~~~~~l~~~-~~d   86 (228)
                      +++|+.+|.|++|++.+++.+..+.....                          .|........++|||+++++. ..+
T Consensus        14 f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~~~   93 (441)
T d1qnia2          14 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDKAN   93 (441)
T ss_dssp             EEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEETTT
T ss_pred             EEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcCCC
Confidence            56888999999999999987776543210                          011233445567899988665 467


Q ss_pred             CeEEEEeCCCCceeeEEecccccceeEEEEECCCCC--EEEEeeCCC-----------------eEEEEEccCCeeEEEE
Q 040370           87 GAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQR--FVLSCGKDS-----------------TVKLWEVSSGRLVKQY  147 (228)
Q Consensus        87 g~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~l~~~~~d~-----------------~i~~wd~~~~~~~~~~  147 (228)
                      ..|.++|+++++....+.... ......++|+|+++  |++..+.+.                 .+..+|..+.+...++
T Consensus        94 ~rVavIDl~t~k~~~ii~iP~-g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI  172 (441)
T d1qnia2          94 TRVARIRLDIMKTDKITHIPN-VQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQV  172 (441)
T ss_dssp             TEEEEEETTTTEEEEEEECTT-CCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEEE
T ss_pred             CEEEEEECCCCcEeeEEecCC-CCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccceeeEEE
Confidence            899999999999888776543 56788999999998  444444332                 2355788877776666


Q ss_pred             ecceeeeeeeEEEECCCCcEEEEeeCC----------------------------------------CCeEEEEEcCCcc
Q 040370          148 LGATHTQLRFQAVFNDTEEFVLSIDEP----------------------------------------SNEIVIWDALTAE  187 (228)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------d~~i~i~d~~~~~  187 (228)
                      ..   ......+.++|+++++++++..                                        ++.+.+++....+
T Consensus       173 ~v---~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~~~  249 (441)
T d1qnia2         173 IV---DGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGESE  249 (441)
T ss_dssp             EE---SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSSSCS
T ss_pred             ec---CCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEEcccCCc
Confidence            53   2345678899999998887643                                        2344444444444


Q ss_pred             eeEEeecCCCCCcEEEEeCCCCcEEE-EecCCCCEEEeeec
Q 040370          188 KVAKWSSNHIGAPRWIEHSPAEAAFI-TCGTDRSVRFWKEI  227 (228)
Q Consensus       188 ~~~~~~~~~~~~v~~~~~~~~~~~l~-s~~~dg~i~vwd~~  227 (228)
                      ....++ .. .....+.++|||++++ ++..|++|.+||+.
T Consensus       250 v~~~IP-vg-ksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~  288 (441)
T d1qnia2         250 FTRYIP-VP-KNPHGLNTSPDGKYFIANGKLSPTVSVIAID  288 (441)
T ss_dssp             SEEEEC-CB-SSCCCEEECTTSCEEEEECTTSSBEEEEEGG
T ss_pred             eEEEEe-CC-CCccCceECCCCCEEEEeCCcCCcEEEEEee
Confidence            454542 22 3467899999999875 56689999999963

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.49  E-value=4.3e-11  Score=84.98  Aligned_cols=201  Identities=9%  Similarity=0.006  Sum_probs=136.0

Q ss_pred             ecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCC
Q 040370           17 QDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVS   96 (228)
Q Consensus        17 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~   96 (228)
                      .-...+..++++|||+++++...+++|..++..... ......     ...+.+++|+|+|+++++...++.+..++...
T Consensus        25 p~~~~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~~-~~~~~~-----~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~   98 (302)
T d2p4oa1          25 PVNTFLENLASAPDGTIFVTNHEVGEIVSITPDGNQ-QIHATV-----EGKVSGLAFTSNGDLVATGWNADSIPVVSLVK   98 (302)
T ss_dssp             CTTCCEEEEEECTTSCEEEEETTTTEEEEECTTCCE-EEEEEC-----SSEEEEEEECTTSCEEEEEECTTSCEEEEEEC
T ss_pred             CCCCCcCCEEECCCCCEEEEeCCCCEEEEEeCCCCE-EEEEcC-----CCCcceEEEcCCCCeEEEecCCceEEEEEecc
Confidence            334468899999999999999999998888865432 221111     56789999999999988888888888887654


Q ss_pred             Cce-eeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecce--------eeeeeeEEEECCCCcE
Q 040370           97 ANC-VRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGAT--------HTQLRFQAVFNDTEEF  167 (228)
Q Consensus        97 ~~~-~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~  167 (228)
                      ... ...+...........+.+.++++++++.+.++.+..+|...+..........        .......+.+  ++..
T Consensus        99 ~~~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~--~~~~  176 (302)
T d2p4oa1          99 SDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKR--FGNF  176 (302)
T ss_dssp             TTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEE--ETTE
T ss_pred             cccceeeccccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccc--cCCc
Confidence            332 2222222225567899999999999988889999999988765433222110        1111223333  3456


Q ss_pred             EEEeeCCCCeEEEEEcCCcceeEEee-cCCCCCcEEEEeCCCCcEEEEecCCCCEEEee
Q 040370          168 VLSIDEPSNEIVIWDALTAEKVAKWS-SNHIGAPRWIEHSPAEAAFITCGTDRSVRFWK  225 (228)
Q Consensus       168 ~~~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd  225 (228)
                      ++.+....+.|..++........... .........++++++|+++++...++.|..++
T Consensus       177 l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~~~~V~~i~  235 (302)
T d2p4oa1         177 LYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIA  235 (302)
T ss_dssp             EEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEEC
T ss_pred             eeeecCCCCeEEeccccccccccccccccCCCCCcceEECCCCCEEEEEcCCCcEEEEC
Confidence            66666667999999876543322110 11234466799999999888888888888775

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.48  E-value=3.4e-13  Score=101.75  Aligned_cols=150  Identities=9%  Similarity=0.052  Sum_probs=111.2

Q ss_pred             eeEEeCCCCCeEEEEecCCeEEEEeCCCCceeeEEeccc---ccceeEEEEECCCCCEEEEeeC---------CCeEEEE
Q 040370           69 NQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAH---GTAEATSANFTKDQRFVLSCGK---------DSTVKLW  136 (228)
Q Consensus        69 ~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~---~~~~i~~~~~~~~~~~l~~~~~---------d~~i~~w  136 (228)
                      ..+.|.++++++..  .|+.+.+||+.+++....+..+.   +...+.+..|+||+++|+.++.         ++.+.+|
T Consensus        20 ~~~~W~~d~~~~~~--~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~   97 (470)
T d2bgra1          20 YSLRWISDHEYLYK--QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIY   97 (470)
T ss_dssp             CCCEECSSSEEEEE--SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEE
T ss_pred             cCCEeCCCCEEEEE--cCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEE
Confidence            46789999886653  57889999999998766554321   2356899999999999998753         5678999


Q ss_pred             EccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecC-----------------CCCC
Q 040370          137 EVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSN-----------------HIGA  199 (228)
Q Consensus       137 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~-----------------~~~~  199 (228)
                      |+.+++.. .+..  +...+..+.|+|+|+.++...  ++.+++|+..+++.......+                 ..+.
T Consensus        98 d~~~~~~~-~l~~--~~~~~~~~~~SPDG~~ia~~~--~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~  172 (470)
T d2bgra1          98 DLNKRQLI-TEER--IPNNTQWVTWSPVGHKLAYVW--NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSA  172 (470)
T ss_dssp             ETTTTEEC-CSSC--CCTTEEEEEECSSTTCEEEEE--TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSS
T ss_pred             ECCCCccc-cccc--CCccccccccccCcceeeEee--cccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCC
Confidence            99987643 3433  556678899999999999864  589999999888765543211                 2233


Q ss_pred             cEEEEeCCCCcEEEEecCCCC-EEEee
Q 040370          200 PRWIEHSPAEAAFITCGTDRS-VRFWK  225 (228)
Q Consensus       200 v~~~~~~~~~~~l~s~~~dg~-i~vwd  225 (228)
                      ...+.|+|||++|+....|.+ +..|.
T Consensus       173 ~~~~~wSPDGk~ia~~~~d~~~v~~~~  199 (470)
T d2bgra1         173 YSALWWSPNGTFLAYAQFNDTEVPLIE  199 (470)
T ss_dssp             SBCEEECTTSSEEEEEEEECTTCCEEE
T ss_pred             ccccEECCCCCccceeEecCCcCceEE
Confidence            566889999999999876544 55554

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.46  E-value=1.8e-10  Score=80.10  Aligned_cols=205  Identities=12%  Similarity=0.073  Sum_probs=122.3

Q ss_pred             ceeEEEeecCcceEEEEEeCCCCEEEEecCC---CeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEec-
Q 040370           10 KRAFRVIQDTHNVRSVSFHPSGDFLLAGTDH---PIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASK-   85 (228)
Q Consensus        10 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-   85 (228)
                      .....+..+...+...+|||||+.||-....   ..+.+.+...+........     ........|+|+|+.++.... 
T Consensus        29 ~~~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~spdg~~i~~~~~~  103 (269)
T d2hqsa1          29 YNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASF-----PRHNGAPAFSPDGSKLAFALSK  103 (269)
T ss_dssp             CSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECC-----SSCEEEEEECTTSSEEEEEECT
T ss_pred             CCcEEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCceeEEeee-----ecccccceecCCCCeeeEeeec
Confidence            3444555677889999999999999865432   3466667666654333222     566788899999998876553 


Q ss_pred             CCeEEEEe--CCCCceeeEEecccccceeEEEEECCCCCEEE-EeeCCC--eEEEEEccCCeeEEEEecceeeeeeeEEE
Q 040370           86 DGAIRLWD--GVSANCVRSIVGAHGTAEATSANFTKDQRFVL-SCGKDS--TVKLWEVSSGRLVKQYLGATHTQLRFQAV  160 (228)
Q Consensus        86 dg~v~iwd--~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~d~--~i~~wd~~~~~~~~~~~~~~~~~~~~~~~  160 (228)
                      ++...++.  ............   ........+++++..++ +...++  .|...++..+.......   .........
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~---~~~~~~~~~  177 (269)
T d2hqsa1         104 TGSLNLYVMDLASGQIRQVTDG---RSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITW---EGSQNQDAD  177 (269)
T ss_dssp             TSSCEEEEEETTTCCEEECCCC---SSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCC---SSSEEEEEE
T ss_pred             CCccceeecccccccceeeeec---cccccccccccccccceecccccCCceEeeeecccccceeeec---ccccccccc
Confidence            33333332  222222222211   33444556677666544 444444  46666666554332222   344556778


Q ss_pred             ECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecC---CCCEEEeee
Q 040370          161 FNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGT---DRSVRFWKE  226 (228)
Q Consensus       161 ~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~---dg~i~vwd~  226 (228)
                      ++|++..++......+...+|........... ..+........|+|||+.|+-.+.   ...+.++++
T Consensus       178 ~spdg~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~  245 (269)
T d2hqsa1         178 VSSDGKFMVMVSSNGGQQHIAKQDLATGGVQV-LSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVST  245 (269)
T ss_dssp             ECTTSSEEEEEEECSSCEEEEEEETTTCCEEE-CCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEET
T ss_pred             cccccceeEEEeecCCceeeeEeecccccceE-eecCccccceEECCCCCEEEEEEcCCCCcEEEEEEC
Confidence            99999999887776666666554433333333 345566778899999998875443   234555553

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.45  E-value=3.3e-10  Score=82.45  Aligned_cols=159  Identities=7%  Similarity=0.073  Sum_probs=102.6

Q ss_pred             eeeEEeCCCCCeEEEEec-CCeEEEEeCCCCcee---eEEecccccceeEEEEECCCCCEEEEee-CCCeEEEEEccCCe
Q 040370           68 INQVRYSSTGGMYVTASK-DGAIRLWDGVSANCV---RSIVGAHGTAEATSANFTKDQRFVLSCG-KDSTVKLWEVSSGR  142 (228)
Q Consensus        68 i~~~~~~~~~~~l~~~~~-dg~v~iwd~~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~d~~i~~wd~~~~~  142 (228)
                      +.++.|+|+|+++++++. ...|.+|+......+   ..............+.|+|+++++++.. .+++|.+|++..++
T Consensus       147 ~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~  226 (365)
T d1jofa_         147 IHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPAT  226 (365)
T ss_dssp             EEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTT
T ss_pred             ceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCCC
Confidence            578999999998887764 457888876543222   2222222245678899999999876554 67899999987654


Q ss_pred             eEEEEecc-----------------eeeeeeeEEEECCCCcEEEEeeCCC-----CeEEEEEcCCcceeEEe---e--cC
Q 040370          143 LVKQYLGA-----------------THTQLRFQAVFNDTEEFVLSIDEPS-----NEIVIWDALTAEKVAKW---S--SN  195 (228)
Q Consensus       143 ~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~d-----~~i~i~d~~~~~~~~~~---~--~~  195 (228)
                      ........                 ........+.++|++++++++...+     +.|..|++.....+...   .  ..
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~  306 (365)
T d1jofa_         227 HMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPT  306 (365)
T ss_dssp             CCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSS
T ss_pred             ceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEEEc
Confidence            32211100                 1122345688999999999875432     33777776543322211   1  12


Q ss_pred             CCCCcEEEEeCC-CCcEEEEe-cCCCCEEEeee
Q 040370          196 HIGAPRWIEHSP-AEAAFITC-GTDRSVRFWKE  226 (228)
Q Consensus       196 ~~~~v~~~~~~~-~~~~l~s~-~~dg~i~vwd~  226 (228)
                      .......++++| +|++|+.+ ..++.|.+|++
T Consensus       307 ~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~  339 (365)
T d1jofa_         307 SGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRW  339 (365)
T ss_dssp             CCTTCCCEEECTTCTTEEEEECSSSCEEEEEEE
T ss_pred             CCCCccEEEecCCCCCEEEEEeCCCCeEEEEEE
Confidence            334567899998 78877666 46789999975

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.44  E-value=5.6e-10  Score=78.19  Aligned_cols=201  Identities=12%  Similarity=0.147  Sum_probs=132.6

Q ss_pred             ceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccc--------------------------------------ee
Q 040370           21 NVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVP--------------------------------------EI   62 (228)
Q Consensus        21 ~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~--------------------------------------~~   62 (228)
                      ....++++|+++.+++-..+..|++||.+ ++.+..+...                                      .+
T Consensus        24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g  102 (279)
T d1q7fa_          24 EPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQYG  102 (279)
T ss_dssp             CEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTTS
T ss_pred             CccEEEEcCCCCEEEEECCCCEEEEEeCC-CCEEEEecccCCCcccccccccccccccccccceeccCCccccccccccc
Confidence            36788888888877776667788888754 2221111000                                      00


Q ss_pred             --------eeccceeeEEeCCCCCeEEEEecCCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEE
Q 040370           63 --------SVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVK  134 (228)
Q Consensus        63 --------~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~  134 (228)
                              ........+++.++++++++....+.+.+++. +++.+..+....+......+++.++++.+++....+.|+
T Consensus       103 ~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~-~g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~V~  181 (279)
T d1q7fa_         103 QFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQ-NGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVK  181 (279)
T ss_dssp             CEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECT-TSCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEE
T ss_pred             cceeecCCCcccccceeccccCCcEEEEeeccceeeEecc-CCceeecccccccccccceeeeccceeEEeeecccccee
Confidence                    00122345666666666666666666777774 455556554443355678899999999888888899999


Q ss_pred             EEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeec-CCCCCcEEEEeCCCCcEEE
Q 040370          135 LWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSS-NHIGAPRWIEHSPAEAAFI  213 (228)
Q Consensus       135 ~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~  213 (228)
                      +||. +++.+..+...........+++.++++.+++-...++.|.+|+ .+++.+..+.. ........+++.|+|.+++
T Consensus       182 ~~d~-~G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~-~~G~~~~~~~~~~~~~~p~~vav~~dG~l~V  259 (279)
T d1q7fa_         182 VFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFT-QDGQLISALESKVKHAQCFDVALMDDGSVVL  259 (279)
T ss_dssp             EEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEEC-TTSCEEEEEEESSCCSCEEEEEEETTTEEEE
T ss_pred             eeec-CCceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEEC-CCCCEEEEEeCCCCCCCEeEEEEeCCCcEEE
Confidence            9996 4666666643223444567889999986666444446799998 56776666532 2334678999999998666


Q ss_pred             EecCCCCEEEeee
Q 040370          214 TCGTDRSVRFWKE  226 (228)
Q Consensus       214 s~~~dg~i~vwd~  226 (228)
                      + +.+++|++|+.
T Consensus       260 ~-~~n~~v~~fr~  271 (279)
T d1q7fa_         260 A-SKDYRLYIYRY  271 (279)
T ss_dssp             E-ETTTEEEEEEC
T ss_pred             E-eCCCeEEEEEe
Confidence            5 57899999985

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.42  E-value=5.8e-13  Score=100.45  Aligned_cols=146  Identities=5%  Similarity=-0.014  Sum_probs=105.4

Q ss_pred             EEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccce-eeeccceeeEEeCCCCCeEEEEec---------CCeEEEE
Q 040370           23 RSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPE-ISVNGAINQVRYSSTGGMYVTASK---------DGAIRLW   92 (228)
Q Consensus        23 ~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~---------dg~v~iw   92 (228)
                      ..+.|.++++++..  .++.+.+||+.+++....+.... ..+...|.++.|||||++|+.++.         ++.+.+|
T Consensus        20 ~~~~W~~d~~~~~~--~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~   97 (470)
T d2bgra1          20 YSLRWISDHEYLYK--QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIY   97 (470)
T ss_dssp             CCCEECSSSEEEEE--SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEE
T ss_pred             cCCEeCCCCEEEEE--cCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEE
Confidence            35779999987764  46789999999998654433211 112567999999999999998753         5788999


Q ss_pred             eCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecce----------------eeeee
Q 040370           93 DGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGAT----------------HTQLR  156 (228)
Q Consensus        93 d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~----------------~~~~~  156 (228)
                      |+.+++.. .+..+  ...+....|+|||+++|.. .++.+++|+..+++..+......                .....
T Consensus        98 d~~~~~~~-~l~~~--~~~~~~~~~SPDG~~ia~~-~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~  173 (470)
T d2bgra1          98 DLNKRQLI-TEERI--PNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAY  173 (470)
T ss_dssp             ETTTTEEC-CSSCC--CTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSS
T ss_pred             ECCCCccc-ccccC--CccccccccccCcceeeEe-ecccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCc
Confidence            99988754 34433  6678899999999999986 57789999998887655432211                01123


Q ss_pred             eEEEECCCCcEEEEeeCC
Q 040370          157 FQAVFNDTEEFVLSIDEP  174 (228)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~  174 (228)
                      ..+.|+|+|++++....+
T Consensus       174 ~~~~wSPDGk~ia~~~~d  191 (470)
T d2bgra1         174 SALWWSPNGTFLAYAQFN  191 (470)
T ss_dssp             BCEEECTTSSEEEEEEEE
T ss_pred             cccEECCCCCccceeEec
Confidence            457799999999886543

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.40  E-value=3.7e-09  Score=75.35  Aligned_cols=202  Identities=9%  Similarity=0.046  Sum_probs=131.9

Q ss_pred             cCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEec----CCeEEEEe
Q 040370           18 DTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASK----DGAIRLWD   93 (228)
Q Consensus        18 ~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----dg~v~iwd   93 (228)
                      ....+..++|.++|++.++-...+.|..|+.+.++........    ......++++++|+++++...    .+.+...+
T Consensus        38 ~~~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~----~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~  113 (319)
T d2dg1a1          38 KGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSH----KANPAAIKIHKDGRLFVCYLGDFKSTGGIFAAT  113 (319)
T ss_dssp             SCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECS----SSSEEEEEECTTSCEEEEECTTSSSCCEEEEEC
T ss_pred             CCcCcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCC----CCCeeEEEECCCCCEEEEecCCCccceeEEEEc
Confidence            3445679999999998888778899999988776543333221    445788999999987776543    34466666


Q ss_pred             CCCCceeeEEecccccceeEEEEECCCCCEEEEeeC------CCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcE
Q 040370           94 GVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGK------DSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEF  167 (228)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~------d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (228)
                      .....................+.+.++|++.++...      .+.+..++... +.+..+..  .-.....++|+|+++.
T Consensus       114 ~~~~~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg-~~~~~~~~--~~~~pnGia~s~dg~~  190 (319)
T d2dg1a1         114 ENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDF-RTVTPIIQ--NISVANGIALSTDEKV  190 (319)
T ss_dssp             TTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTS-CCEEEEEE--EESSEEEEEECTTSSE
T ss_pred             CCCceeeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEeccc-ceeEEEee--ccceeeeeeeccccce
Confidence            655554444433222445788999999986665432      13355555443 33333221  2233456899999998


Q ss_pred             EEEeeCCCCeEEEEEcCCcc-eeE----E--eecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeee
Q 040370          168 VLSIDEPSNEIVIWDALTAE-KVA----K--WSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKE  226 (228)
Q Consensus       168 ~~~~~~~d~~i~i~d~~~~~-~~~----~--~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~  226 (228)
                      ++.+....+.|..||+.... ...    .  ...........+++.++|++.++....+.|.++|.
T Consensus       191 lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p  256 (319)
T d2dg1a1         191 LWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK  256 (319)
T ss_dssp             EEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT
T ss_pred             EEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECC
Confidence            87777767999999976422 111    1  11122234678999999998888888899988874

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.38  E-value=1e-11  Score=90.67  Aligned_cols=186  Identities=7%  Similarity=-0.103  Sum_probs=119.5

Q ss_pred             CcceEEEEEeCCCCEE--E-EecCCC--eEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEe---------
Q 040370           19 THNVRSVSFHPSGDFL--L-AGTDHP--IAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTAS---------   84 (228)
Q Consensus        19 ~~~v~~~~~~~~~~~l--~-~~~~d~--~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~---------   84 (228)
                      .++...++..++++..  + ....++  .+.++|..+++.+.....      .....++|+|+|+.+++.+         
T Consensus        19 ~g~~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~~------~~~~~~a~spDg~~i~~~~~~~~~~~~g   92 (368)
T d1mdah_          19 DGSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLG------AFLSLAVAGHSGSDFALASTSFARSAKG   92 (368)
T ss_dssp             CCCCBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEE------CTTCEEEECTTSSCEEEEEEEETTTTSS
T ss_pred             CCCccccccCCCCcceeEEeeccCCCcceEEEEeCCCCcEEEEEeC------CCCCcceECCCCCEEEEEcccCcccccc
Confidence            3444555567777753  2 233444  467779999887665542      2234689999999888764         


Q ss_pred             -cCCeEEEEeCCCCceeeEEecccc-----cceeEEEEECCCCCEEEEee-CCCeEEEEEccCCeeEEEEecceeeeeee
Q 040370           85 -KDGAIRLWDGVSANCVRSIVGAHG-----TAEATSANFTKDQRFVLSCG-KDSTVKLWEVSSGRLVKQYLGATHTQLRF  157 (228)
Q Consensus        85 -~dg~v~iwd~~~~~~~~~~~~~~~-----~~~i~~~~~~~~~~~l~~~~-~d~~i~~wd~~~~~~~~~~~~~~~~~~~~  157 (228)
                       .|+.|.+||..+++....+..+..     ......++|+|||++++++. .++.+.+||+.+++....+..+...  . 
T Consensus        93 ~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~--~-  169 (368)
T d1mdah_          93 KRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCF--H-  169 (368)
T ss_dssp             SEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCC--C-
T ss_pred             ccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcc--e-
Confidence             477899999999998888765321     11234689999999998776 5789999999999988877543211  1 


Q ss_pred             EEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEee-----cCCCCCcEEEEeCCCCcEEEEec
Q 040370          158 QAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWS-----SNHIGAPRWIEHSPAEAAFITCG  216 (228)
Q Consensus       158 ~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~l~s~~  216 (228)
                         ..+.+...+...+.||.+.+++...........     ..+...+....+.+++..+.+.+
T Consensus       170 ---~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  230 (368)
T d1mdah_         170 ---IHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVA  230 (368)
T ss_dssp             ---CEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECBS
T ss_pred             ---EccCCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEEEecC
Confidence               112233333344557888888876554433221     23344455667777777665543

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.37  E-value=2e-09  Score=76.54  Aligned_cols=199  Identities=9%  Similarity=0.075  Sum_probs=125.7

Q ss_pred             eEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEec---------------C
Q 040370           22 VRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASK---------------D   86 (228)
Q Consensus        22 v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---------------d   86 (228)
                      -..++|.++++.++++...+.|...+.+...............-...+.+++.++|++.++-..               .
T Consensus        73 P~Gl~~~~dg~~l~vad~~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~  152 (314)
T d1pjxa_          73 PAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKF  152 (314)
T ss_dssp             EEEEEECSSSSEEEEEETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSC
T ss_pred             ceeEEEeCCCCEEEEEECCCeEEEEeCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCC
Confidence            5679999999988888777778888887654332222211111123678999999987776432               2


Q ss_pred             CeEEEEeCCCCceeeEEecccccceeEEEEECCCCC-----EEEEeeCCCeEEEEEccCCeeEEEEe---c--ceeeeee
Q 040370           87 GAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQR-----FVLSCGKDSTVKLWEVSSGRLVKQYL---G--ATHTQLR  156 (228)
Q Consensus        87 g~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-----~l~~~~~d~~i~~wd~~~~~~~~~~~---~--~~~~~~~  156 (228)
                      |.|..++.. ++.......   -...+.++|+|+++     ++++-+..+.|..||+.....+....   .  .......
T Consensus       153 G~v~~~~~d-g~~~~~~~~---~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~p  228 (314)
T d1pjxa_         153 GSIYCFTTD-GQMIQVDTA---FQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGA  228 (314)
T ss_dssp             EEEEEECTT-SCEEEEEEE---ESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEE
T ss_pred             ceEEEEeec-CceeEeeCC---cceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccc
Confidence            345555543 333322222   22346788988764     44555677889999876433222111   0  0011223


Q ss_pred             eEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCc-EEEEecCCCCEEEeee
Q 040370          157 FQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEA-AFITCGTDRSVRFWKE  226 (228)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~dg~i~vwd~  226 (228)
                      -.+++..+++..++... .+.|.+||...++....+ ......+++++|.|+++ +++|.+.+|.|...++
T Consensus       229 dGiavD~~GnlyVa~~~-~g~I~~~dp~~g~~~~~i-~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~  297 (314)
T d1pjxa_         229 DGMDFDEDNNLLVANWG-SSHIEVFGPDGGQPKMRI-RCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEW  297 (314)
T ss_dssp             EEEEEBTTCCEEEEEET-TTEEEEECTTCBSCSEEE-ECSSSCEEEEEECTTSSEEEEEETTTTEEEEEEC
T ss_pred             eeeEEecCCcEEEEEcC-CCEEEEEeCCCCEEEEEE-ECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEEC
Confidence            46788888887666544 599999998877766655 34446788999999886 5677778887776664

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.35  E-value=4.1e-10  Score=78.09  Aligned_cols=196  Identities=12%  Similarity=0.056  Sum_probs=126.2

Q ss_pred             CcceEEEEEeCCCCEEEEe-cCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCCC
Q 040370           19 THNVRSVSFHPSGDFLLAG-TDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSA   97 (228)
Q Consensus        19 ~~~v~~~~~~~~~~~l~~~-~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~   97 (228)
                      ......++++++|+..++. +..+.+..++............   . ......++++++++++++....+.+++++-.+.
T Consensus        13 ~~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~---~-~~~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~   88 (260)
T d1rwia_          13 RLSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFN---G-LYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNN   88 (260)
T ss_dssp             CCCEEEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCC---S-CCSCCCEEECTTCCEEEEETTTEEEEECTTCSC
T ss_pred             cCCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccC---C-ccCceEEEEcCCCCEEEeeeeeceeeeeeeccc
Confidence            3456899999999976654 4557777766554332221111   1 234678999999998887777777777765554


Q ss_pred             ceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCCe
Q 040370           98 NCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNE  177 (228)
Q Consensus        98 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  177 (228)
                      ........   .....++++.++++++++-..+..+..++....... ... .........+++.+++..+++... ++.
T Consensus        89 ~~~~~~~~---~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~-~~~-~~~~~~p~~i~~~~~g~~~v~~~~-~~~  162 (260)
T d1rwia_          89 QTVLPFDG---LNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQT-VLP-FTGLNDPDGVAVDNSGNVYVTDTD-NNR  162 (260)
T ss_dssp             CEECCCCS---CCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCE-ECC-CCSCCSCCEEEECTTCCEEEEEGG-GTE
T ss_pred             eeeeeeee---eeecccccccccceeEeeccccccccccccccceee-eee-ecccCCcceeeecCCCCEeeeccc-ccc
Confidence            44333222   345688999999988877767777777776543322 211 112233456788888886655444 688


Q ss_pred             EEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEee
Q 040370          178 IVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWK  225 (228)
Q Consensus       178 i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd  225 (228)
                      |..+|....... ............+++.++++++++....+.|..++
T Consensus       163 i~~~d~~~~~~~-~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~  209 (260)
T d1rwia_         163 VVKLEAESNNQV-VLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLL  209 (260)
T ss_dssp             EEEECTTTCCEE-ECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEEC
T ss_pred             ccccccccceee-eeeccccCCCccceeeeeeeeeeeecCCCEEEEEe
Confidence            999997654433 33234556778999999999888888888777665

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.34  E-value=3.6e-10  Score=78.35  Aligned_cols=195  Identities=10%  Similarity=0.089  Sum_probs=128.7

Q ss_pred             ceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCCCcee
Q 040370           21 NVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANCV  100 (228)
Q Consensus        21 ~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~  100 (228)
                      ....++++++++.+++....+.+++++..+.........     ......+++.++++++++-..+..+..++.......
T Consensus        58 ~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~~~~~~~-----~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~  132 (260)
T d1rwia_          58 QPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPFDG-----LNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQT  132 (260)
T ss_dssp             SCCCEEECTTCCEEEEETTTEEEEECTTCSCCEECCCCS-----CCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCE
T ss_pred             CceEEEEcCCCCEEEeeeeeceeeeeeeccceeeeeeee-----eeecccccccccceeEeeccccccccccccccceee
Confidence            456788999998887777777766665554443322211     345688999999998877777777888876554322


Q ss_pred             eEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCCeEEE
Q 040370          101 RSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVI  180 (228)
Q Consensus       101 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i  180 (228)
                      . ... ........++++++++.+++...++.|..+|....... .+.. ........+++.+++...++ ....+.|..
T Consensus       133 ~-~~~-~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~~-~~~~-~~~~~p~gi~~d~~g~l~vs-d~~~~~i~~  207 (260)
T d1rwia_         133 V-LPF-TGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQV-VLPF-TDITAPWGIAVDEAGTVYVT-EHNTNQVVK  207 (260)
T ss_dssp             E-CCC-CSCCSCCEEEECTTCCEEEEEGGGTEEEEECTTTCCEE-ECCC-SSCCSEEEEEECTTCCEEEE-ETTTTEEEE
T ss_pred             e-eee-cccCCcceeeecCCCCEeeeccccccccccccccceee-eeec-cccCCCccceeeeeeeeeee-ecCCCEEEE
Confidence            2 211 11334568999999998888888889999998754332 2221 12334567888888865554 554688888


Q ss_pred             EEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeee
Q 040370          181 WDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKE  226 (228)
Q Consensus       181 ~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~  226 (228)
                      ++..... ..............|++++++.++++-..+++|+..+.
T Consensus       208 ~~~~~~~-~~~~~~~~~~~P~~i~~d~~g~l~vad~~~~rI~~i~~  252 (260)
T d1rwia_         208 LLAGSTT-STVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTS  252 (260)
T ss_dssp             ECTTCSC-CEECCCCSCCCEEEEEECTTCCEEEEEGGGTEEEEECC
T ss_pred             EeCCCCe-EEEEccCCCCCeEEEEEeCCCCEEEEECCCCEEEEEeC
Confidence            8765433 22222233456789999999998888777787776553

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.32  E-value=1.1e-09  Score=77.56  Aligned_cols=198  Identities=12%  Similarity=-0.021  Sum_probs=127.3

Q ss_pred             EEeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccce--EEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEE
Q 040370           14 RVIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQ--CYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRL   91 (228)
Q Consensus        14 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~--~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i   91 (228)
                      .+......+.+++|+|+|+++++...++.+..++.....  .........   ....+.+++.++++++++-+.++.+..
T Consensus        62 ~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~n~i~~~~~g~~~v~~~~~~~i~~  138 (302)
T d2p4oa1          62 IHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPD---AIFLNGITPLSDTQYLTADSYRGAIWL  138 (302)
T ss_dssp             EEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTT---CSCEEEEEESSSSEEEEEETTTTEEEE
T ss_pred             EEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEecccccceeeccccCC---ccccceeEEccCCCEEeecccccccee
Confidence            344567889999999999999988888888888876432  211111111   456788999999999888888999999


Q ss_pred             EeCCCCceeeEEecc--------cccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECC
Q 040370           92 WDGVSANCVRSIVGA--------HGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFND  163 (228)
Q Consensus        92 wd~~~~~~~~~~~~~--------~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (228)
                      +|...+.........        ........+.+.. +..+++.+..+.|..++.....................+++.+
T Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~-~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~  217 (302)
T d2p4oa1         139 IDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFG-NFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDV  217 (302)
T ss_dssp             EETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEET-TEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBT
T ss_pred             eeccCCcceeEecCCccceeeccCcccccccccccC-CceeeecCCCCeEEeccccccccccccccccCCCCCcceEECC
Confidence            998776543332221        1122345666653 3455666778889988886543322221111233445789999


Q ss_pred             CCcEEEEeeCCCCeEEEEEcCCcceeEEe-ecCCCCCcEEEEe---CCCCcEEEEecC
Q 040370          164 TEEFVLSIDEPSNEIVIWDALTAEKVAKW-SSNHIGAPRWIEH---SPAEAAFITCGT  217 (228)
Q Consensus       164 ~~~~~~~~~~~d~~i~i~d~~~~~~~~~~-~~~~~~~v~~~~~---~~~~~~l~s~~~  217 (228)
                      ++...++... ++.|..++.. ++..... ........++++|   ++|++.|+.++.
T Consensus       218 dG~l~va~~~-~~~V~~i~p~-G~~~~~~~~~~~~~~pt~vafg~~~~D~~~Lyvtt~  273 (302)
T d2p4oa1         218 EGNLYGATHI-YNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTN  273 (302)
T ss_dssp             TCCEEEECBT-TCCEEEECTT-CCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEEC
T ss_pred             CCCEEEEEcC-CCcEEEECCC-CCEEEEEecCCCCCCceEEEEcCCCCCCCEEEEECC
Confidence            9986666544 6889998865 3332222 1234456789999   667777765543

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.26  E-value=3.9e-09  Score=76.72  Aligned_cols=166  Identities=10%  Similarity=0.071  Sum_probs=105.5

Q ss_pred             ceEEEEEeCCCCEEEEecC-CCeEEEEEcccc-eEEeeeccceeeeccceeeEEeCCCCCeEEEEe-cCCeEEEEeCCCC
Q 040370           21 NVRSVSFHPSGDFLLAGTD-HPIAHLYDVNTF-QCYLSANVPEISVNGAINQVRYSSTGGMYVTAS-KDGAIRLWDGVSA   97 (228)
Q Consensus        21 ~v~~~~~~~~~~~l~~~~~-d~~i~vw~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~v~iwd~~~~   97 (228)
                      .+.++.|+|+|++++++.. ...|.+|+.... ...................++|+|+++++.+.. .++.|.+|++..+
T Consensus       146 h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~  225 (365)
T d1jofa_         146 GIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPA  225 (365)
T ss_dssp             CEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred             cceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCC
Confidence            4789999999998887653 457888876543 221111111111145678899999999775554 5789999998765


Q ss_pred             ceeeEEecc-----------------cccceeEEEEECCCCCEEEEeeC------CCeEEEEEccCCeeEEEE----ecc
Q 040370           98 NCVRSIVGA-----------------HGTAEATSANFTKDQRFVLSCGK------DSTVKLWEVSSGRLVKQY----LGA  150 (228)
Q Consensus        98 ~~~~~~~~~-----------------~~~~~i~~~~~~~~~~~l~~~~~------d~~i~~wd~~~~~~~~~~----~~~  150 (228)
                      .........                 ........+.++|+|++|+++..      ...|..|++.....+...    ...
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~  305 (365)
T d1jofa_         226 THMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTP  305 (365)
T ss_dssp             TCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECS
T ss_pred             CceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEEE
Confidence            432221100                 11224567899999999988753      223777777643222211    111


Q ss_pred             eeeeeeeEEEECC-CCcEEEEeeCCCCeEEEEEcCCc
Q 040370          151 THTQLRFQAVFND-TEEFVLSIDEPSNEIVIWDALTA  186 (228)
Q Consensus       151 ~~~~~~~~~~~~~-~~~~~~~~~~~d~~i~i~d~~~~  186 (228)
                      ........+.++| +++++++++..++.|.+|+....
T Consensus       306 ~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~  342 (365)
T d1jofa_         306 TSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             SCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             cCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCC
Confidence            1223445688887 78999999888999999986543

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.15  E-value=1.2e-07  Score=67.25  Aligned_cols=204  Identities=8%  Similarity=0.110  Sum_probs=125.6

Q ss_pred             CcceEEEEEeCCCCEEEEecC-------CCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEE
Q 040370           19 THNVRSVSFHPSGDFLLAGTD-------HPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRL   91 (228)
Q Consensus        19 ~~~v~~~~~~~~~~~l~~~~~-------d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~i   91 (228)
                      -...-.++|.|+|+++++...       ++.|..||.+++..............+....++|.++++.++++...+.+..
T Consensus        17 ~~g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~~~i~~   96 (314)
T d1pjxa_          17 IPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLV   96 (314)
T ss_dssp             CTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEE
T ss_pred             CCCCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEECCCeEEE
Confidence            345678899999998776433       4678889988776433322211111234678999999998888877777888


Q ss_pred             EeCCCCceeeEEecccc--cceeEEEEECCCCCEEEEeeC---------------CCeEEEEEccCCeeEEEEecceeee
Q 040370           92 WDGVSANCVRSIVGAHG--TAEATSANFTKDQRFVLSCGK---------------DSTVKLWEVSSGRLVKQYLGATHTQ  154 (228)
Q Consensus        92 wd~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~---------------d~~i~~wd~~~~~~~~~~~~~~~~~  154 (228)
                      .|...............  -...+.+++.++|++.++-..               .|.|..++. .++......   ...
T Consensus        97 ~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~-dg~~~~~~~---~~~  172 (314)
T d1pjxa_          97 VQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTT-DGQMIQVDT---AFQ  172 (314)
T ss_dssp             EETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECT-TSCEEEEEE---EES
T ss_pred             EeCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEee-cCceeEeeC---Ccc
Confidence            88765432221111110  113577899999987776432               234555544 233332222   122


Q ss_pred             eeeEEEECCCCc----EEEEeeCCCCeEEEEEcCCcceeE------EeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEe
Q 040370          155 LRFQAVFNDTEE----FVLSIDEPSNEIVIWDALTAEKVA------KWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFW  224 (228)
Q Consensus       155 ~~~~~~~~~~~~----~~~~~~~~d~~i~i~d~~~~~~~~------~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vw  224 (228)
                      ....++++|++.    .++++....+.|..||+.....+.      .+..........+++.++|++.++....+.|.+|
T Consensus       173 ~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~~  252 (314)
T d1pjxa_         173 FPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVF  252 (314)
T ss_dssp             SEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEE
T ss_pred             eeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCEEEEE
Confidence            234566766553    566666667999999876443322      1111233446789999999988887778889998


Q ss_pred             ee
Q 040370          225 KE  226 (228)
Q Consensus       225 d~  226 (228)
                      |.
T Consensus       253 dp  254 (314)
T d1pjxa_         253 GP  254 (314)
T ss_dssp             CT
T ss_pred             eC
Confidence            74

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=1.3e-08  Score=76.15  Aligned_cols=190  Identities=9%  Similarity=0.030  Sum_probs=118.2

Q ss_pred             cceEEEEEeCCCCEEEEec---------CCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEE
Q 040370           20 HNVRSVSFHPSGDFLLAGT---------DHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIR   90 (228)
Q Consensus        20 ~~v~~~~~~~~~~~l~~~~---------~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~   90 (228)
                      ..+....||||+++++.+.         ..+.+.++|+.++......... .. ...+....|||+|+.+|-.. ++.|.
T Consensus        61 ~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~-~~-~~~l~~~~wSPDG~~iafv~-~~nl~  137 (465)
T d1xfda1          61 LRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPE-VS-NAKLQYAGWGPKGQQLIFIF-ENNIY  137 (465)
T ss_dssp             TTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTT-CC-SCCCSBCCBCSSTTCEEEEE-TTEEE
T ss_pred             cccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceeeccCcc-CC-ccccceeeeccCCceEEEEe-cceEE
Confidence            3677888999999988753         3578899999988754432221 11 44567789999999988765 67899


Q ss_pred             EEeCCCCceeeEEeccccc----------------ceeEEEEECCCCCEEEEeeCC-C----------------------
Q 040370           91 LWDGVSANCVRSIVGAHGT----------------AEATSANFTKDQRFVLSCGKD-S----------------------  131 (228)
Q Consensus        91 iwd~~~~~~~~~~~~~~~~----------------~~i~~~~~~~~~~~l~~~~~d-~----------------------  131 (228)
                      +.+...+...+........                ..-.++.|+|||++||....| .                      
T Consensus       138 ~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~  217 (465)
T d1xfda1         138 YCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYH  217 (465)
T ss_dssp             EESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEE
T ss_pred             EEecCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEEecccccceeecccccccccceeeeee
Confidence            9998877665554332110                112567899999999876422 2                      


Q ss_pred             -----------eEEEEEccCCeeEEEEec----ceeeeeeeEEEECCCCcEEEEeeCCC---CeEEEEEcCCcceeEEee
Q 040370          132 -----------TVKLWEVSSGRLVKQYLG----ATHTQLRFQAVFNDTEEFVLSIDEPS---NEIVIWDALTAEKVAKWS  193 (228)
Q Consensus       132 -----------~i~~wd~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~d---~~i~i~d~~~~~~~~~~~  193 (228)
                                 .+.++|+.++........    ......+..+.|.++++.++.....+   ..+.++|..+++......
T Consensus       218 Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~  297 (465)
T d1xfda1         218 YPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHE  297 (465)
T ss_dssp             CCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEE
T ss_pred             ccccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCCCeEEEEEEccccccceEEEEcCCCCcEEEEEE
Confidence                       234455443322111110    01123456678999988766654322   368889999887765543


Q ss_pred             cCCCCCc----EEEEeCCCCcEE
Q 040370          194 SNHIGAP----RWIEHSPAEAAF  212 (228)
Q Consensus       194 ~~~~~~v----~~~~~~~~~~~l  212 (228)
                      ....+.|    ....|+|+|+.+
T Consensus       298 e~~~~wv~~~~~~p~~~~dg~~~  320 (465)
T d1xfda1         298 DESEAWLHRQNEEPVFSKDGRKF  320 (465)
T ss_dssp             EECSSCCCCCCCCCEECTTSCSE
T ss_pred             EcCCceEeccCCceeEccCCCee
Confidence            3222222    345788888743

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.10  E-value=3.4e-07  Score=65.01  Aligned_cols=193  Identities=10%  Similarity=0.144  Sum_probs=116.9

Q ss_pred             ecCcceEEEEEeCCCCEEEEecC----CCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEec------C
Q 040370           17 QDTHNVRSVSFHPSGDFLLAGTD----HPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASK------D   86 (228)
Q Consensus        17 ~~~~~v~~~~~~~~~~~l~~~~~----d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~------d   86 (228)
                      ........++++++|+++++...    .+.+...+.............. . ....+.+++.++|++.++...      .
T Consensus        79 ~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~-~~~~nd~~~d~~G~l~vtd~~~~~~~~~  156 (319)
T d2dg1a1          79 SHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLS-T-AYCIDDMVFDSKGGFYFTDFRGYSTNPL  156 (319)
T ss_dssp             CSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSS-S-CCCEEEEEECTTSCEEEEECCCBTTBCC
T ss_pred             CCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCceeeeeccCCC-c-ccCCcceeEEeccceeecccccccccCc
Confidence            34556789999999988776533    2344444544443322221111 1 345778999999987666432      2


Q ss_pred             CeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEE-EeeCCCeEEEEEccCC-eeEEEEe-----cceeeeeeeEE
Q 040370           87 GAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVL-SCGKDSTVKLWEVSSG-RLVKQYL-----GATHTQLRFQA  159 (228)
Q Consensus        87 g~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~d~~i~~wd~~~~-~~~~~~~-----~~~~~~~~~~~  159 (228)
                      +.+..++...+. +..+...  -...+.++|+|+++.|+ +-+..+.|..||+... .......     ........-.+
T Consensus       157 g~v~~~~~dg~~-~~~~~~~--~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl  233 (319)
T d2dg1a1         157 GGVYYVSPDFRT-VTPIIQN--ISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSC  233 (319)
T ss_dssp             EEEEEECTTSCC-EEEEEEE--ESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEE
T ss_pred             ceeEEEecccce-eEEEeec--cceeeeeeeccccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeee
Confidence            346556654333 3322221  33457899999998664 4456789999998642 2111111     00011224568


Q ss_pred             EECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeec-----CCCCCcEEEEeCCCCcEEEEec
Q 040370          160 VFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSS-----NHIGAPRWIEHSPAEAAFITCG  216 (228)
Q Consensus       160 ~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~l~s~~  216 (228)
                      ++.++|+..++... .+.|.++|. .++.+..+..     ++...+++++|.|....+++..
T Consensus       234 ~vD~~G~l~Va~~~-~g~V~~~~p-~G~~l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~t~  293 (319)
T d2dg1a1         234 CIDSDDNLYVAMYG-QGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICS  293 (319)
T ss_dssp             EEBTTCCEEEEEET-TTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEE
T ss_pred             eEcCCCCEEEEEcC-CCEEEEECC-CCcEEEEEeCCCcCCCcCceeeeEEEeCCCCEEEEEc
Confidence            88899986666554 699999994 7887776632     3445688999999777666544

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.08  E-value=6.3e-08  Score=67.53  Aligned_cols=161  Identities=11%  Similarity=0.204  Sum_probs=113.2

Q ss_pred             cceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCCCce
Q 040370           20 HNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANC   99 (228)
Q Consensus        20 ~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~   99 (228)
                      .....+++.+++..+++....+.+.+++.. ++.+...... .+ ......+++.++++.+++....+.|++||. +++.
T Consensus       114 ~~p~~~avd~~G~i~v~~~~~~~~~~~~~~-g~~~~~~g~~-~~-~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~-~G~~  189 (279)
T d1q7fa_         114 QHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCS-KH-LEFPNGVVVNDKQEIFISDNRAHCVKVFNY-EGQY  189 (279)
T ss_dssp             SCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECT-TT-CSSEEEEEECSSSEEEEEEGGGTEEEEEET-TCCE
T ss_pred             cccceeccccCCcEEEEeeccceeeEeccC-Cceeeccccc-cc-ccccceeeeccceeEEeeeccccceeeeec-CCce
Confidence            456778888888888877777778888754 3433333221 11 456778899999998888888999999996 5666


Q ss_pred             eeEEecccccceeEEEEECCCCCEEEEeeC-CCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCCeE
Q 040370          100 VRSIVGAHGTAEATSANFTKDQRFVLSCGK-DSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEI  178 (228)
Q Consensus       100 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i  178 (228)
                      +..+...........+++.++++.+++-.. ++.|.+++. +++.+..+...........+++.+++.++++ .. +..|
T Consensus       190 ~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~-~G~~~~~~~~~~~~~~p~~vav~~dG~l~V~-~~-n~~v  266 (279)
T d1q7fa_         190 LRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMDDGSVVLA-SK-DYRL  266 (279)
T ss_dssp             EEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEETTTEEEEE-ET-TTEE
T ss_pred             eeeecccccccCCcccccccCCeEEEEECCCCcEEEEECC-CCCEEEEEeCCCCCCCEeEEEEeCCCcEEEE-eC-CCeE
Confidence            666643222445688999999997776543 457999984 6787777654333345677888899875554 44 6899


Q ss_pred             EEEEcCCcc
Q 040370          179 VIWDALTAE  187 (228)
Q Consensus       179 ~i~d~~~~~  187 (228)
                      ++|......
T Consensus       267 ~~fr~~~~~  275 (279)
T d1q7fa_         267 YIYRYVQLA  275 (279)
T ss_dssp             EEEECSCCC
T ss_pred             EEEEeeeec
Confidence            999987654

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=3e-09  Score=79.73  Aligned_cols=146  Identities=7%  Similarity=-0.019  Sum_probs=97.6

Q ss_pred             EEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEe---------cCCeEEEEeCC
Q 040370           25 VSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTAS---------KDGAIRLWDGV   95 (228)
Q Consensus        25 ~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~---------~dg~v~iwd~~   95 (228)
                      ..|.+++.++.. ..+|.|.+||+.+++....+...... ...+....||||+++++...         ..+.+.++|+.
T Consensus        22 ~~W~~~~~~~~~-~~~g~i~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~   99 (465)
T d1xfda1          22 AKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIE-SLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIP   99 (465)
T ss_dssp             CCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTT-TTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESS
T ss_pred             CEEeCCCcEEEE-eCCCcEEEEECCCCCEEEEEcCcccc-ccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEcc
Confidence            358888876654 45778999999988754333322211 34677888999999887763         35789999999


Q ss_pred             CCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceee----------------eeeeEE
Q 040370           96 SANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHT----------------QLRFQA  159 (228)
Q Consensus        96 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~----------------~~~~~~  159 (228)
                      +++.............+....|+|||+.+|-.. ++.|.+.+...+...+........                .....+
T Consensus       100 ~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~  178 (465)
T d1xfda1         100 HGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAH  178 (465)
T ss_dssp             SCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEE
T ss_pred             CCceeeccCccCCccccceeeeccCCceEEEEe-cceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceE
Confidence            887544332222234556688999999988775 678999888776655443221100                112467


Q ss_pred             EECCCCcEEEEeeC
Q 040370          160 VFNDTEEFVLSIDE  173 (228)
Q Consensus       160 ~~~~~~~~~~~~~~  173 (228)
                      .|+|+|++++....
T Consensus       179 ~WSPDgk~iaf~~~  192 (465)
T d1xfda1         179 WWSPDGTRLAYAAI  192 (465)
T ss_dssp             EECTTSSEEEEEEE
T ss_pred             EECCCCCeEEEEEe
Confidence            79999999988643

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.02  E-value=6.9e-07  Score=62.63  Aligned_cols=195  Identities=12%  Similarity=0.033  Sum_probs=124.5

Q ss_pred             EeecCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEec----CCeEE
Q 040370           15 VIQDTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASK----DGAIR   90 (228)
Q Consensus        15 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----dg~v~   90 (228)
                      .......+.++++.+++.++++ +.+ .+.++|..+++...............++.+.+.|+|++.++...    .+.-.
T Consensus        54 ~~~~~~~~~~i~~~~dg~l~va-~~~-gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~  131 (295)
T d2ghsa1          54 VHALPFMGSALAKISDSKQLIA-SDD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGS  131 (295)
T ss_dssp             EEECSSCEEEEEEEETTEEEEE-ETT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEE
T ss_pred             EEECCCCcEEEEEecCCCEEEE-EeC-ccEEeecccceeeEEeeeecCCCcccceeeEECCCCCEEEEecccccccccee
Confidence            3345678889999988877765 444 58899999887544333222111346889999999987666542    23455


Q ss_pred             EEeCCCCceeeEEecccccceeEEEEECCCCCEEE-EeeCCCeEEEEEccCC------eeEEEEecceeeeeeeEEEECC
Q 040370           91 LWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVL-SCGKDSTVKLWEVSSG------RLVKQYLGATHTQLRFQAVFND  163 (228)
Q Consensus        91 iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~d~~i~~wd~~~~------~~~~~~~~~~~~~~~~~~~~~~  163 (228)
                      +|.+..++.......   -...+.++|+++++.++ +-+..+.|..|++...      +................+++..
T Consensus       132 l~~~~~g~~~~~~~~---~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~  208 (295)
T d2ghsa1         132 IYHVAKGKVTKLFAD---ISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDA  208 (295)
T ss_dssp             EEEEETTEEEEEEEE---ESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECT
T ss_pred             EeeecCCcEEEEeec---cCCcceeeecCCCceEEEeecccceeeEeeecccccccccceEEEeccCcccccccceEEcC
Confidence            666666655444433   33457899999988654 5556788999987431      1111111111234456778888


Q ss_pred             CCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeC-CCCc-EEEEecC
Q 040370          164 TEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHS-PAEA-AFITCGT  217 (228)
Q Consensus       164 ~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~-~l~s~~~  217 (228)
                      +|...++.-. .+.|..|| ..++.+..+. --...+++++|- |+.+ +++|+..
T Consensus       209 ~GnlWva~~~-~g~V~~~d-p~G~~~~~i~-lP~~~~T~~~FGG~d~~~LyvTta~  261 (295)
T d2ghsa1         209 EGHIWNARWG-EGAVDRYD-TDGNHIARYE-VPGKQTTCPAFIGPDASRLLVTSAR  261 (295)
T ss_dssp             TSCEEEEEET-TTEEEEEC-TTCCEEEEEE-CSCSBEEEEEEESTTSCEEEEEEBC
T ss_pred             CCCEEeeeeC-CCceEEec-CCCcEeeEec-CCCCceEEEEEeCCCCCEEEEEECC
Confidence            8887766544 48899999 4688877773 333568999995 5654 4455443

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.95  E-value=6.6e-07  Score=61.55  Aligned_cols=171  Identities=6%  Similarity=0.017  Sum_probs=101.4

Q ss_pred             eEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCC---eEEEEeCCCCceeeEEecccccceeEEEEEC
Q 040370           42 IAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDG---AIRLWDGVSANCVRSIVGAHGTAEATSANFT  118 (228)
Q Consensus        42 ~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg---~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~  118 (228)
                      .|.|.|.+..........     ...+...+|||||+.||......   .+.+.+...+........   ........|+
T Consensus        20 ~l~i~d~dG~~~~~l~~~-----~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~s   91 (269)
T d2hqsa1          20 ELRVSDYDGYNQFVVHRS-----PQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASF---PRHNGAPAFS   91 (269)
T ss_dssp             EEEEEETTSCSCEEEEEE-----SSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECC---SSCEEEEEEC
T ss_pred             EEEEEcCCCCCcEEEecC-----CCceeeeEECCCCCEEEEEEeeccCcceeeeecccCceeEEeee---ecccccceec
Confidence            577777765443332221     55678899999999998665433   466667666554443332   5567788999


Q ss_pred             CCCCEEEEeeC-CCe--EEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCC--eEEEEEcCCcceeEEee
Q 040370          119 KDQRFVLSCGK-DST--VKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSN--EIVIWDALTAEKVAKWS  193 (228)
Q Consensus       119 ~~~~~l~~~~~-d~~--i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~--~i~i~d~~~~~~~~~~~  193 (228)
                      |+++.++.... ++.  +..+............   .........+++++..++.....++  .|.+.+...+.....  
T Consensus        92 pdg~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~--  166 (269)
T d2hqsa1          92 PDGSKLAFALSKTGSLNLYVMDLASGQIRQVTD---GRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRI--  166 (269)
T ss_dssp             TTSSEEEEEECTTSSCEEEEEETTTCCEEECCC---CSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEEC--
T ss_pred             CCCCeeeEeeecCCccceeecccccccceeeee---ccccccccccccccccceecccccCCceEeeeecccccceee--
Confidence            99998876553 333  3333333322222222   2333345566777776666555455  455556555443322  


Q ss_pred             cCCCCCcEEEEeCCCCcEEEEecCC-CCEEEee
Q 040370          194 SNHIGAPRWIEHSPAEAAFITCGTD-RSVRFWK  225 (228)
Q Consensus       194 ~~~~~~v~~~~~~~~~~~l~s~~~d-g~i~vwd  225 (228)
                      ...........|+|+++.++..+.+ +...+|.
T Consensus       167 ~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~  199 (269)
T d2hqsa1         167 TWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAK  199 (269)
T ss_dssp             CCSSSEEEEEEECTTSSEEEEEEECSSCEEEEE
T ss_pred             ecccccccccccccccceeEEEeecCCceeeeE
Confidence            3456677788999999988776544 4444443

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.88  E-value=2.6e-06  Score=59.59  Aligned_cols=193  Identities=10%  Similarity=0.026  Sum_probs=128.1

Q ss_pred             EEEEEeCC-CCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCCCceee
Q 040370           23 RSVSFHPS-GDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVR  101 (228)
Q Consensus        23 ~~~~~~~~-~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~  101 (228)
                      -+..|++. +.+..+--..+.|..||.++++... ...     ...+.++++.++++++++ +.+ .+.++|..+++...
T Consensus        21 Egp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~~-~~~-----~~~~~~i~~~~dg~l~va-~~~-gl~~~d~~tg~~~~   92 (295)
T d2ghsa1          21 EGPTFDPASGTAWWFNILERELHELHLASGRKTV-HAL-----PFMGSALAKISDSKQLIA-SDD-GLFLRDTATGVLTL   92 (295)
T ss_dssp             EEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE-EEC-----SSCEEEEEEEETTEEEEE-ETT-EEEEEETTTCCEEE
T ss_pred             eCCeEECCCCEEEEEECCCCEEEEEECCCCeEEE-EEC-----CCCcEEEEEecCCCEEEE-EeC-ccEEeecccceeeE
Confidence            45678874 4444555567889999998876532 222     456788999888876665 444 58899998887544


Q ss_pred             EEecc--cccceeEEEEECCCCCEEEEeeC----CCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCC
Q 040370          102 SIVGA--HGTAEATSANFTKDQRFVLSCGK----DSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPS  175 (228)
Q Consensus       102 ~~~~~--~~~~~i~~~~~~~~~~~l~~~~~----d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  175 (228)
                      .....  .....++.+.+.|+|++.++...    .+.-.+|.+..++......   .......+.+++++..++.+.+..
T Consensus        93 l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~---~~~~~Ng~~~s~d~~~l~~~dt~~  169 (295)
T d2ghsa1          93 HAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFA---DISIPNSICFSPDGTTGYFVDTKV  169 (295)
T ss_dssp             EECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEE---EESSEEEEEECTTSCEEEEEETTT
T ss_pred             EeeeecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEee---ccCCcceeeecCCCceEEEeeccc
Confidence            33221  11346788999999987665542    2345677777776544443   233445788999999888888777


Q ss_pred             CeEEEEEcCCc------ce-eEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeee
Q 040370          176 NEIVIWDALTA------EK-VAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKE  226 (228)
Q Consensus       176 ~~i~i~d~~~~------~~-~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~  226 (228)
                      +.|..|++...      +. ......+..+....+++..+|++.++.-..+.|..||.
T Consensus       170 ~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp  227 (295)
T d2ghsa1         170 NRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT  227 (295)
T ss_dssp             CEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT
T ss_pred             ceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecC
Confidence            99999987422      11 11111234556788999999987777666777887773

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.84  E-value=1e-06  Score=60.86  Aligned_cols=96  Identities=16%  Similarity=0.162  Sum_probs=63.6

Q ss_pred             EEeCC--CCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEec-C-----CeEEEEeCCCC
Q 040370           26 SFHPS--GDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASK-D-----GAIRLWDGVSA   97 (228)
Q Consensus        26 ~~~~~--~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d-----g~v~iwd~~~~   97 (228)
                      ..+|+  |+.++-.+ ++.|.+.|+..++.......     .+.+...+|||||+.|+.... +     ..|.+++..++
T Consensus         5 ~~sPdi~G~~v~f~~-~~dl~~~d~~~g~~~~Lt~~-----~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g   78 (281)
T d1k32a2           5 LLNPDIHGDRIIFVC-CDDLWEHDLKSGSTRKIVSN-----LGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENG   78 (281)
T ss_dssp             CEEEEEETTEEEEEE-TTEEEEEETTTCCEEEEECS-----SSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTT
T ss_pred             ccCCCCCCCEEEEEe-CCcEEEEECCCCCEEEEecC-----CCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCC
Confidence            35788  99888665 46788889998876443221     456788899999998885532 2     24777787777


Q ss_pred             ceeeEEecc----cccceeEEEEECCCCCEEEEe
Q 040370           98 NCVRSIVGA----HGTAEATSANFTKDQRFVLSC  127 (228)
Q Consensus        98 ~~~~~~~~~----~~~~~i~~~~~~~~~~~l~~~  127 (228)
                      +..+.....    ..........|+|+++.++..
T Consensus        79 ~~~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~  112 (281)
T d1k32a2          79 EIKRITYFSGKSTGRRMFTDVAGFDPDGNLIIST  112 (281)
T ss_dssp             EEEECCCCCEEEETTEECSEEEEECTTCCEEEEE
T ss_pred             ceEEeeecCCCccCccccccccccCCCCCEEEEE
Confidence            654332111    012345678899999988764

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.77  E-value=1.9e-06  Score=62.19  Aligned_cols=194  Identities=11%  Similarity=0.139  Sum_probs=128.1

Q ss_pred             EEEEeC---CCCEEEEec-CCCeEEEEEcccceEEeeeccceeeeccceeeEEeCC--CCCeEEEEecC-----------
Q 040370           24 SVSFHP---SGDFLLAGT-DHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSS--TGGMYVTASKD-----------   86 (228)
Q Consensus        24 ~~~~~~---~~~~l~~~~-~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~~d-----------   86 (228)
                      .+.+..   ||+++++.. .++.|.+.|+++.++.+....+.   ...+..+...+  ...+++..+.+           
T Consensus        89 ~~S~TdGtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn---~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l  165 (459)
T d1fwxa2          89 HMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPN---AKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNM  165 (459)
T ss_dssp             EEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSS---CCSEEEEEECCSSBCSEEEEEECSCEESSCSSSST
T ss_pred             cccccCCccceeEEEEEcCCCceEEEEECcceeeeEEEecCC---CCCCceeecccCCCeEEEEccCccccccCCCCccc
Confidence            455543   788887654 68899999999999876555543   34566666654  45577776653           


Q ss_pred             -------CeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCC---------------eEEEE--------
Q 040370           87 -------GAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDS---------------TVKLW--------  136 (228)
Q Consensus        87 -------g~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~---------------~i~~w--------  136 (228)
                             +.+...|..+.+....+..   ......+.++++|+++++.+.+.               .+.++        
T Consensus       166 ~d~~~y~~~~t~ID~~tm~V~~QV~V---~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~a  242 (459)
T d1fwxa2         166 EDVANYVNVFTAVDADKWEVAWQVLV---SGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKA  242 (459)
T ss_dssp             TCGG-EEEEEEEEETTTTEEEEEEEE---SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHH
T ss_pred             cchhhcceEEEEEecCCceEEEEeee---CCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHh
Confidence                   2367789988888777765   34566789999999998876431               13333        


Q ss_pred             ---------------EccCC---eeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeE--------
Q 040370          137 ---------------EVSSG---RLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVA--------  190 (228)
Q Consensus       137 ---------------d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~--------  190 (228)
                                     |.+..   ..+..+.   .+.....+..+|+|+++++++.-+.++.++|++.-....        
T Consensus       243 v~~Gk~~eingV~VVD~~~~~~~~v~~yIP---VpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~  319 (459)
T d1fwxa2         243 IAAGDYQELNGVKVVDGRKEASSLFTRYIP---IANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRS  319 (459)
T ss_dssp             HHHTCSEEETTEEEEECSGG--CSSEEEEE---EESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGG
T ss_pred             hhcCCcEEeCCceeecccccCCcceeEEEe---cCCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccc
Confidence                           33321   0111111   223345678899999999999999999999996432110        


Q ss_pred             --EeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEeee
Q 040370          191 --KWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWKE  226 (228)
Q Consensus       191 --~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd~  226 (228)
                        .-.....-....-+|+..|....|---|..|.-|++
T Consensus       320 ~~~~e~elglgPLht~fd~~g~aytslfids~v~kw~~  357 (459)
T d1fwxa2         320 AVVAEPELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNI  357 (459)
T ss_dssp             GEEECCBCCSCEEEEEECTTSEEEEEETTTTEEEEEEH
T ss_pred             cEEeecccCcCccccccCCCceEEEEeeccceEEEEec
Confidence              011122334566788888876666678999999986

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.46  E-value=6.4e-05  Score=54.28  Aligned_cols=188  Identities=10%  Similarity=0.089  Sum_probs=119.0

Q ss_pred             EEEecCCCeEEEEEcccceEEeeeccceee-----------------------------------ecccee--eEEeCC-
Q 040370           34 LLAGTDHPIAHLYDVNTFQCYLSANVPEIS-----------------------------------VNGAIN--QVRYSS-   75 (228)
Q Consensus        34 l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~-----------------------------------~~~~i~--~~~~~~-   75 (228)
                      |.+|+..|.|+|+-+.+++.+.........                                   ..+...  .+.+.. 
T Consensus        16 f~SgG~sG~v~v~G~PSmR~l~~ipvF~~~~~~G~G~~~es~~il~~~~~~~t~~~l~~~g~~~~~~GD~HHP~~S~TdG   95 (459)
T d1fwxa2          16 FWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTEG   95 (459)
T ss_dssp             EECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCC--------------CCCCCBCCEEEEEETT
T ss_pred             EeeCCccceEEEEecCCcceEEEeeeecCCCCcccCcchhHHHHhhcccChhhhhhhhccCcccccCCCcCCCcccccCC
Confidence            568899999999999888766544322100                                   011122  233332 


Q ss_pred             --CCCeEEEEe-cCCeEEEEeCCCCceeeEEecccccceeEEEEEC--CCCCEEEEeeCCC------------------e
Q 040370           76 --TGGMYVTAS-KDGAIRLWDGVSANCVRSIVGAHGTAEATSANFT--KDQRFVLSCGKDS------------------T  132 (228)
Q Consensus        76 --~~~~l~~~~-~dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~l~~~~~d~------------------~  132 (228)
                        ||++++... .+..|.+-|+++.+..+.+.... ...+..+...  |+..|++.++.+.                  .
T Consensus        96 tyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn-~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~  174 (459)
T d1fwxa2          96 KYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPN-AKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNV  174 (459)
T ss_dssp             EEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSS-CCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEE
T ss_pred             ccceeEEEEEcCCCceEEEEECcceeeeEEEecCC-CCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceE
Confidence              677777665 67899999999998877665533 4455666654  4566777776532                  3


Q ss_pred             EEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCC-------------------------------------
Q 040370          133 VKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPS-------------------------------------  175 (228)
Q Consensus       133 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-------------------------------------  175 (228)
                      +.++|..+++...+...   ......+.++++|+++++++.+.                                     
T Consensus       175 ~t~ID~~tm~V~~QV~V---~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~ei  251 (459)
T d1fwxa2         175 FTAVDADKWEVAWQVLV---SGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQEL  251 (459)
T ss_dssp             EEEEETTTTEEEEEEEE---SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEE
T ss_pred             EEEEecCCceEEEEeee---CCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEe
Confidence            67789988887766653   22445788999999999986431                                     


Q ss_pred             CeEEEEEcCCc--c-eeEEeecCCCCCcEEEEeCCCCcEEEEec-CCCCEEEeeec
Q 040370          176 NEIVIWDALTA--E-KVAKWSSNHIGAPRWIEHSPAEAAFITCG-TDRSVRFWKEI  227 (228)
Q Consensus       176 ~~i~i~d~~~~--~-~~~~~~~~~~~~v~~~~~~~~~~~l~s~~-~dg~i~vwd~~  227 (228)
                      +.+.+-|.+..  . ....+  .-......+.++|||++++.++ .+.++.|.|+.
T Consensus       252 ngV~VVD~~~~~~~~v~~yI--PVpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~  305 (459)
T d1fwxa2         252 NGVKVVDGRKEASSLFTRYI--PIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVT  305 (459)
T ss_dssp             TTEEEEECSGG--CSSEEEE--EEESSCCCEEECTTSSEEEEECTTSSBEEEEEGG
T ss_pred             CCceeecccccCCcceeEEE--ecCCCCCceEECCCCCEEEEeCCcCCcEEEEEeh
Confidence            12233343321  1 11111  1122355789999999987766 68899999863

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.35  E-value=0.0001  Score=50.40  Aligned_cols=73  Identities=8%  Similarity=0.132  Sum_probs=48.0

Q ss_pred             eEEEeecCcceEEEEEeCCCCEEEEec----CC--CeEEEEEcccceEEeeeccceee--eccceeeEEeCCCCCeEEEE
Q 040370           12 AFRVIQDTHNVRSVSFHPSGDFLLAGT----DH--PIAHLYDVNTFQCYLSANVPEIS--VNGAINQVRYSSTGGMYVTA   83 (228)
Q Consensus        12 ~~~~~~~~~~v~~~~~~~~~~~l~~~~----~d--~~i~vw~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~l~~~   83 (228)
                      ..++..+...+...+|||||+.||...    .+  ..|.+++...++...........  .........|+|+|+.++..
T Consensus        33 ~~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~  112 (281)
T d1k32a2          33 TRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPDGNLIIST  112 (281)
T ss_dssp             EEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCCCCEEEETTEECSEEEEECTTCCEEEEE
T ss_pred             EEEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEEeeecCCCccCccccccccccCCCCCEEEEE
Confidence            445566778899999999999998543    22  24777788777765433222111  02245678899999988765


Q ss_pred             e
Q 040370           84 S   84 (228)
Q Consensus        84 ~   84 (228)
                      .
T Consensus       113 ~  113 (281)
T d1k32a2         113 D  113 (281)
T ss_dssp             C
T ss_pred             E
Confidence            3

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=97.98  E-value=0.0011  Score=47.47  Aligned_cols=140  Identities=10%  Similarity=0.053  Sum_probs=82.5

Q ss_pred             CCcCCccccceeEEEe-ecCcceEEEEEeCCCCEEEEecCC-CeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCC
Q 040370            1 FFDFSKATAKRAFRVI-QDTHNVRSVSFHPSGDFLLAGTDH-PIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGG   78 (228)
Q Consensus         1 iwd~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d-~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~   78 (228)
                      +||....+..+..... .+.......++.++++.++.|+.+ ..+.+||..+..-......+.   ...-...+..++++
T Consensus        56 ~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~---~r~~~~~~~~~dG~  132 (387)
T d1k3ia3          56 SWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQV---ARGYQSSATMSDGR  132 (387)
T ss_dssp             EECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSS---CCSSCEEEECTTSC
T ss_pred             EEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcceeEecCccCcccccccccc---cccccceeeecCCc
Confidence            3666655544332222 233334466788999999988654 589999999877544333222   22234567777999


Q ss_pred             eEEEEecC------CeEEEEeCCCCceeeEEeccc-------cc-----ceeEEEEECCCCCEEEEeeCCCeEEEEEccC
Q 040370           79 MYVTASKD------GAIRLWDGVSANCVRSIVGAH-------GT-----AEATSANFTKDQRFVLSCGKDSTVKLWEVSS  140 (228)
Q Consensus        79 ~l~~~~~d------g~v~iwd~~~~~~~~~~~~~~-------~~-----~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~  140 (228)
                      .++.|+.+      ..+.+||..+.+-...-....       +.     ..-..+...++++.++.+..++.+.++|..+
T Consensus       133 v~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~  212 (387)
T d1k3ia3         133 VFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGS  212 (387)
T ss_dssp             EEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTT
T ss_pred             eeeeccccccccccceeeeecCCCCceeecCCCcccccccccccceeeccceeEEEEeCCCCEEEecCcCCcEEecCccc
Confidence            88888753      368999988765322110000       00     0001122334677777777777788888776


Q ss_pred             Cee
Q 040370          141 GRL  143 (228)
Q Consensus       141 ~~~  143 (228)
                      ...
T Consensus       213 ~~~  215 (387)
T d1k3ia3         213 GDV  215 (387)
T ss_dssp             CEE
T ss_pred             CcE
Confidence            554

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.88  E-value=0.0013  Score=44.80  Aligned_cols=198  Identities=7%  Similarity=-0.038  Sum_probs=118.9

Q ss_pred             ecCcceEEEEEeCCCCEEEEe-cCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEE-EEecCCeEEEEeC
Q 040370           17 QDTHNVRSVSFHPSGDFLLAG-TDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYV-TASKDGAIRLWDG   94 (228)
Q Consensus        17 ~~~~~v~~~~~~~~~~~l~~~-~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~dg~v~iwd~   94 (228)
                      .+...+.+++|.+..+.++-+ ..++.|+..++............    ...+..+++..-++.|. +-...+.|.+.++
T Consensus        33 ~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~----~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~  108 (263)
T d1npea_          33 IPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQD----LGSPEGIALDHLGRTIFWTDSQLDRIEVAKM  108 (263)
T ss_dssp             EEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTT----CCCEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             cCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEec----cccccEEEEeccCCeEEEeccCCCEEEEEec
Confidence            345568889999877766654 56678888888765443332221    24577888876555554 5556789999998


Q ss_pred             CCCceeeEEecccccceeEEEEECCCCCEEEEeeCC---CeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEe
Q 040370           95 VSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKD---STVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSI  171 (228)
Q Consensus        95 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (228)
                      ....... +.... ......++++|...+++-....   ..|.--++..... ..+... .-.....+++.+.++.++.+
T Consensus       109 dg~~~~~-l~~~~-l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~-~~i~~~-~~~~P~glaiD~~~~~lYw~  184 (263)
T d1npea_         109 DGTQRRV-LFDTG-LVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR-RILAQD-NLGLPNGLTFDAFSSQLCWV  184 (263)
T ss_dssp             TSCSCEE-EECSS-CSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC-EEEECT-TCSCEEEEEEETTTTEEEEE
T ss_pred             CCceEEE-Eeccc-ccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCc-eeeeee-cccccceEEEeecCcEEEEE
Confidence            7554333 32221 3467899999977766644322   2355556543322 222211 22344678888888888777


Q ss_pred             eCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCCEEEee
Q 040370          172 DEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRSVRFWK  225 (228)
Q Consensus       172 ~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd  225 (228)
                      ....+.|...|+......... .+.. ...++++. ++.+..+-...+.|...|
T Consensus       185 d~~~~~I~~~~~~g~~~~~v~-~~~~-~P~~lav~-~~~lYwtd~~~~~I~~~~  235 (263)
T d1npea_         185 DAGTHRAECLNPAQPGRRKVL-EGLQ-YPFAVTSY-GKNLYYTDWKTNSVIAMD  235 (263)
T ss_dssp             ETTTTEEEEEETTEEEEEEEE-ECCC-SEEEEEEE-TTEEEEEETTTTEEEEEE
T ss_pred             eCCCCEEEEEECCCCCeEEEE-CCCC-CcEEEEEE-CCEEEEEECCCCEEEEEE
Confidence            766789999998655443333 3322 34577775 344445544556665544

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.81  E-value=0.0017  Score=44.17  Aligned_cols=205  Identities=9%  Similarity=-0.017  Sum_probs=116.9

Q ss_pred             eecCcceEEEEEeCCCCEEEEe-cCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEE-EEecCCeEEEEe
Q 040370           16 IQDTHNVRSVSFHPSGDFLLAG-TDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYV-TASKDGAIRLWD   93 (228)
Q Consensus        16 ~~~~~~v~~~~~~~~~~~l~~~-~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~dg~v~iwd   93 (228)
                      ......+.+++|++..+.|+-. ...+.|.-.++...................+..+++.+.++.|. +-...+.|.+.+
T Consensus        26 ~~~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~~~lY~~d~~~~~I~v~~  105 (266)
T d1ijqa1          26 IPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVAD  105 (266)
T ss_dssp             ECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             eCCCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeeccceEEEEecCCCEEEeEe
Confidence            4455678899999977777655 35666766666532211111100000024466788876555444 445668899999


Q ss_pred             CCCCceeeEEecccccceeEEEEECCCCCEEEEee--CCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEe
Q 040370           94 GVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCG--KDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSI  171 (228)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (228)
                      +............  ......++++|...+|+-..  ..+.|.-.++... ....+... .-.....+++.+.+..++.+
T Consensus       106 ~~g~~~~~~~~~~--~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs-~~~~l~~~-~~~~p~gl~iD~~~~~lYw~  181 (266)
T d1ijqa1         106 TKGVKRKTLFREN--GSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV-DIYSLVTE-NIQWPNGITLDLLSGRLYWV  181 (266)
T ss_dssp             TTSSSEEEEEECT--TCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC-CEEEEECS-SCSCEEEEEEETTTTEEEEE
T ss_pred             cCCceEEEEEcCC--CCCcceEEEEcccCeEEEeccCCCcceeEeccCCC-ceeccccc-ccceeeEEEeeccccEEEEe
Confidence            8765544444332  45678899998665555443  3456777777543 33333221 22345678888888888887


Q ss_pred             eCCCCeEEEEEcCCcceeEEee-cCCCCCcEEEEeCCCCcEEEEecCCCCEEEee
Q 040370          172 DEPSNEIVIWDALTAEKVAKWS-SNHIGAPRWIEHSPAEAAFITCGTDRSVRFWK  225 (228)
Q Consensus       172 ~~~d~~i~i~d~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~s~~~dg~i~vwd  225 (228)
                      ....+.|...++.......... ........++++. ++.+..+-..++.|...+
T Consensus       182 d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~-~~~ly~td~~~~~I~~~~  235 (266)
T d1ijqa1         182 DSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSAN  235 (266)
T ss_dssp             ETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEE
T ss_pred             cCCcCEEEEEECCCCCEEEEEeCCCcccccEEEEEE-CCEEEEEECCCCeEEEEE
Confidence            7777899999986544332221 2222345667765 344444544556655443

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.73  E-value=0.0032  Score=47.96  Aligned_cols=82  Identities=13%  Similarity=0.173  Sum_probs=52.7

Q ss_pred             CeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCC-
Q 040370           87 GAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTE-  165 (228)
Q Consensus        87 g~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  165 (228)
                      |.+.-+|+.+++..-......   ++..-..+-.+.++++|+.||.++-+|.++|+.+-++...... ...-+.+..+| 
T Consensus       466 G~l~AiD~~TG~i~W~~~~~~---p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~-~~~P~ty~~~G~  541 (582)
T d1flga_         466 GSLRAMDPVSGKVVWEHKEHL---PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGI-VSPPITWEQDGE  541 (582)
T ss_dssp             EEEEEECTTTCCEEEEEEESS---CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCC-CSCCEEEEETTE
T ss_pred             CeEEEEcCCCCcEEeecCCCC---CCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCc-cccCEEEEECCE
Confidence            567778888888776665432   2221112235678888999999999999999999888753322 12224444566 


Q ss_pred             cEEEEee
Q 040370          166 EFVLSID  172 (228)
Q Consensus       166 ~~~~~~~  172 (228)
                      +|+++..
T Consensus       542 qYv~i~a  548 (582)
T d1flga_         542 QYLGVTV  548 (582)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEe
Confidence            4555443

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=97.72  E-value=0.0014  Score=47.00  Aligned_cols=121  Identities=15%  Similarity=0.064  Sum_probs=75.9

Q ss_pred             ceEEEEEeCCCCEEEEecCCC-----------eEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecC-Ce
Q 040370           21 NVRSVSFHPSGDFLLAGTDHP-----------IAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKD-GA   88 (228)
Q Consensus        21 ~v~~~~~~~~~~~l~~~~~d~-----------~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g~   88 (228)
                      ++.......+++.++.|+.+.           .+.+||..+++-.........+ .......++.+++++++.|+.+ ..
T Consensus        21 ~~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~-~~~~~~~~~~~~g~i~v~Gg~~~~~   99 (387)
T d1k3ia3          21 PAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKH-DMFCPGISMDGNGQIVVTGGNDAKK   99 (387)
T ss_dssp             CSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSC-CCSSCEEEECTTSCEEEECSSSTTC
T ss_pred             ccEEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCc-ccceeEEEEecCCcEEEeecCCCcc
Confidence            344444445888888877421           3779999887643221111111 2233456788999988888755 58


Q ss_pred             EEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCC------CeEEEEEccCCee
Q 040370           89 IRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKD------STVKLWEVSSGRL  143 (228)
Q Consensus        89 v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d------~~i~~wd~~~~~~  143 (228)
                      +.+||..+......-... ....-...+..+|++.++.|+.+      ..+.+||..+.+.
T Consensus       100 ~~~yd~~~~~w~~~~~~~-~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W  159 (387)
T d1k3ia3         100 TSLYDSSSDSWIPGPDMQ-VARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTW  159 (387)
T ss_dssp             EEEEEGGGTEEEECCCCS-SCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEE
T ss_pred             eeEecCccCccccccccc-ccccccceeeecCCceeeeccccccccccceeeeecCCCCce
Confidence            999999876543322221 12233456677899998888753      3589999988754

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.72  E-value=0.005  Score=46.74  Aligned_cols=170  Identities=6%  Similarity=0.004  Sum_probs=95.1

Q ss_pred             CeEEEEEcccceEEeeeccceeee-----ccceeeEEeCCCCC---eEEEEecCCeEEEEeCCCCceeeEEecccc----
Q 040370           41 PIAHLYDVNTFQCYLSANVPEISV-----NGAINQVRYSSTGG---MYVTASKDGAIRLWDGVSANCVRSIVGAHG----  108 (228)
Q Consensus        41 ~~i~vw~~~~~~~~~~~~~~~~~~-----~~~i~~~~~~~~~~---~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~----  108 (228)
                      ..+...|.++++.+...+......     ...........+++   .++.++.+|.+.+.|.++++.+........    
T Consensus       272 ~svvAld~~TG~~~W~~q~~~~D~Wd~D~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr~tG~~i~~~~~~~~~~~~  351 (571)
T d2ad6a1         272 MTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVF  351 (571)
T ss_dssp             TEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSE
T ss_pred             cceeeeeccchhheecccccCccccccccccccceeeeeccCccccceeeccccceEEEEecCCCcEeeeeccCCccccc
Confidence            467788999998877665421100     01111111222333   567888999999999999987643321100    


Q ss_pred             ---------------------------------cceeEEEEECCCCCEEEEeeCC-------------------------
Q 040370          109 ---------------------------------TAEATSANFTKDQRFVLSCGKD-------------------------  130 (228)
Q Consensus       109 ---------------------------------~~~i~~~~~~~~~~~l~~~~~d-------------------------  130 (228)
                                                       ...-...+++|+...++....+                         
T Consensus       352 ~~~~~~~~~~i~~~~~~~~~~~~g~~~~p~~~Gg~~w~~~a~dP~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  431 (571)
T d2ad6a1         352 KKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAM  431 (571)
T ss_dssp             EEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEE
T ss_pred             ccccccccccccCcccccccccCceEEEeccccccccccceECCCCceEEEeccccccccccccccccCCccccccceee
Confidence                                             0000124566666555543322                         


Q ss_pred             ------------CeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCC
Q 040370          131 ------------STVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIG  198 (228)
Q Consensus       131 ------------~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~  198 (228)
                                  |.|.-+|+.+++.+-+......   ...-.....+..+++ +..|+.++.+|.++|+.+-++..+...
T Consensus       432 ~~~~~~~~~~~~G~l~AiD~~TG~~~W~~~~~~~---~~~g~l~TagglVf~-G~~dg~l~A~Da~tGe~lW~~~l~~~~  507 (571)
T d2ad6a1         432 YPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFA---AWGGTLYTKGGLVWY-ATLDGYLKALDNKDGKELWNFKMPSGG  507 (571)
T ss_dssp             EECTTSTTSCCCEEEEEECTTTCCEEEEEEESSC---CCSBCEEETTTEEEE-ECTTSEEEEEETTTCCEEEEEECSSCC
T ss_pred             ccccCCcccCCcccEEEeccCCCceeeEcCCCCC---CCcceeEecCCEEEE-ECCCCeEEEEECCCCcEEEEEECCCCc
Confidence                        4577778888877665542211   111111123556665 566899999999999999887544333


Q ss_pred             CcEEEEeCCCCc-EEEE
Q 040370          199 APRWIEHSPAEA-AFIT  214 (228)
Q Consensus       199 ~v~~~~~~~~~~-~l~s  214 (228)
                      .-.-+.+..+|+ |++.
T Consensus       508 ~a~P~ty~~dGkqYi~v  524 (571)
T d2ad6a1         508 IGSPMTYSFKGKQYIGS  524 (571)
T ss_dssp             CSCCEEEEETTEEEEEE
T ss_pred             eecceEEEECCEEEEEE
Confidence            222355555775 4433

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=97.69  E-value=0.0014  Score=49.80  Aligned_cols=82  Identities=12%  Similarity=0.218  Sum_probs=51.2

Q ss_pred             CeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCc
Q 040370           87 GAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEE  166 (228)
Q Consensus        87 g~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (228)
                      |.+.-+|+.+++.+-......   +..+-.+.-.+.+++.|+.||.++-+|.++|+.+-++....... ..-+.+..+|+
T Consensus       438 G~l~A~D~~tGk~~W~~~~~~---~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~-~~P~ty~~dGk  513 (560)
T d1kv9a2         438 GALLAWDPVKQKAAWKVPYPT---HWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIV-AAPMTFELAGR  513 (560)
T ss_dssp             EEEEEEETTTTEEEEEEEESS---SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCC-SCCEEEEETTE
T ss_pred             cceEEEeCCCCeEeeeccCCC---CCCCceeEECCCEEEEECCCCcEEEEECCCCcEeEEEECCCCcc-ccCEEEEECCE
Confidence            567788888888776665432   11111122246788889999999999999999998887543211 12233334554


Q ss_pred             -EEEEee
Q 040370          167 -FVLSID  172 (228)
Q Consensus       167 -~~~~~~  172 (228)
                       |+++..
T Consensus       514 qyv~v~a  520 (560)
T d1kv9a2         514 QYVAIMA  520 (560)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEe
Confidence             555443

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.63  E-value=0.0034  Score=42.57  Aligned_cols=177  Identities=8%  Similarity=-0.017  Sum_probs=107.4

Q ss_pred             cceEEEEEeCCCCEEE-EecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEec-CCe--EEEEeCC
Q 040370           20 HNVRSVSFHPSGDFLL-AGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASK-DGA--IRLWDGV   95 (228)
Q Consensus        20 ~~v~~~~~~~~~~~l~-~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~--v~iwd~~   95 (228)
                      ..+.++++..-+..|+ +-...+.|.+.++............    ...+..+++.|...+++.... .+.  |.--++.
T Consensus        79 ~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~~~~----l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~d  154 (263)
T d1npea_          79 GSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTG----LVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMD  154 (263)
T ss_dssp             CCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSS----CSSEEEEEEETTTTEEEEEECCSSSCEEEEEETT
T ss_pred             ccccEEEEeccCCeEEEeccCCCEEEEEecCCceEEEEeccc----ccCCcEEEEecccCcEEEeecCCCCcEEEEecCC
Confidence            5678899987555555 5556779999998765432222111    245788999997666654432 223  4444554


Q ss_pred             CCceeeEEecccccceeEEEEECCCCCEEEEe-eCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCC
Q 040370           96 SANCVRSIVGAHGTAEATSANFTKDQRFVLSC-GKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEP  174 (228)
Q Consensus        96 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (228)
                      .... ..+... .-....++++.+.++.|+-+ ...+.|...|+........+.+..+   ...++..  +.+++.+...
T Consensus       155 G~~~-~~i~~~-~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~~v~~~~~~---P~~lav~--~~~lYwtd~~  227 (263)
T d1npea_         155 GTNR-RILAQD-NLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQY---PFAVTSY--GKNLYYTDWK  227 (263)
T ss_dssp             SCCC-EEEECT-TCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCCS---EEEEEEE--TTEEEEEETT
T ss_pred             CCCc-eeeeee-cccccceEEEeecCcEEEEEeCCCCEEEEEECCCCCeEEEECCCCC---cEEEEEE--CCEEEEEECC
Confidence            3332 233221 13456789999877766555 4667899999875444333333222   2344443  5667776666


Q ss_pred             CCeEEEEEcCCcceeEEeecCCCCCcEEEEeCC
Q 040370          175 SNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSP  207 (228)
Q Consensus       175 d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~  207 (228)
                      .+.|...|..+++....+..........|+..+
T Consensus       228 ~~~I~~~~~~~g~~~~~~~~~~~~~~~gi~v~~  260 (263)
T d1npea_         228 TNSVIAMDLAISKEMDTFHPHKQTRLYGITIAL  260 (263)
T ss_dssp             TTEEEEEETTTTEEEEEECCSSCCCCCCEEEEC
T ss_pred             CCEEEEEECCCCccceEECCCCCCCcceEEEeC
Confidence            789999999888887766444444555666544

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=97.57  E-value=0.0022  Score=48.74  Aligned_cols=82  Identities=12%  Similarity=0.143  Sum_probs=49.0

Q ss_pred             eEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCc-
Q 040370           88 AIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEE-  166 (228)
Q Consensus        88 ~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  166 (228)
                      .+.-||+.+++.+-......   +...=..+-.+.++++|+.|+.++.+|.++|+.+-++....... ..-+.+..+|+ 
T Consensus       458 ~l~AiD~~tGk~~W~~~~~~---p~~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~-~~P~ty~~~GkQ  533 (573)
T d1kb0a2         458 RLLAWDPVAQKAAWSVEHVS---PWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVV-AAPSTYMVDGRQ  533 (573)
T ss_dssp             EEEEEETTTTEEEEEEEESS---SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCC-SCCEEEEETTEE
T ss_pred             cEEEeCCCCCceEeeecCCC---CCCCceEEEcCCEEEEECCCCeEEEEECCCCcEeEEEECCCCcc-ccCEEEEECCEE
Confidence            46667777777666554421   11111112257788889999999999999999998886532211 11233333554 


Q ss_pred             EEEEeeC
Q 040370          167 FVLSIDE  173 (228)
Q Consensus       167 ~~~~~~~  173 (228)
                      |+++..+
T Consensus       534 Yv~v~~G  540 (573)
T d1kb0a2         534 YVSVAVG  540 (573)
T ss_dssp             EEEEEEC
T ss_pred             EEEEEeC
Confidence            5554443

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.49  E-value=0.0058  Score=41.47  Aligned_cols=165  Identities=10%  Similarity=-0.004  Sum_probs=99.6

Q ss_pred             cceEEEEEeCCCCEEE-EecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEe--cCCeEEEEeCCC
Q 040370           20 HNVRSVSFHPSGDFLL-AGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTAS--KDGAIRLWDGVS   96 (228)
Q Consensus        20 ~~v~~~~~~~~~~~l~-~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~dg~v~iwd~~~   96 (228)
                      ..+..+++.+.+..|. +-...+.|.+.++............    ......++..|...+++...  ..+.|.-.++..
T Consensus        77 ~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~----~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dG  152 (266)
T d1ijqa1          77 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREN----GSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG  152 (266)
T ss_dssp             SCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECT----TCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS
T ss_pred             CCcceEEEeeccceEEEEecCCCEEEeEecCCceEEEEEcCC----CCCcceEEEEcccCeEEEeccCCCcceeEeccCC
Confidence            4567788887555555 4456678999998866543322221    34578899988655555443  334566666654


Q ss_pred             CceeeEEecccccceeEEEEECCCCCEEEEe-eCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCC
Q 040370           97 ANCVRSIVGAHGTAEATSANFTKDQRFVLSC-GKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPS  175 (228)
Q Consensus        97 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  175 (228)
                      .. ...+.... -....++++.+.++.|+-+ ...+.|...|+....................++..  +.+++.+...+
T Consensus       153 s~-~~~l~~~~-~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~--~~~ly~td~~~  228 (266)
T d1ijqa1         153 VD-IYSLVTEN-IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIIN  228 (266)
T ss_dssp             CC-EEEEECSS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTT
T ss_pred             Cc-eecccccc-cceeeEEEeeccccEEEEecCCcCEEEEEECCCCCEEEEEeCCCcccccEEEEEE--CCEEEEEECCC
Confidence            33 33333221 3456889999877766655 55678999998654333333222122223344443  45667666667


Q ss_pred             CeEEEEEcCCcceeEEe
Q 040370          176 NEIVIWDALTAEKVAKW  192 (228)
Q Consensus       176 ~~i~i~d~~~~~~~~~~  192 (228)
                      +.|...+..+++....+
T Consensus       229 ~~I~~~~~~~g~~~~~~  245 (266)
T d1ijqa1         229 EAIFSANRLTGSDVNLL  245 (266)
T ss_dssp             TEEEEEETTTCCCCEEE
T ss_pred             CeEEEEECCCCcceEEE
Confidence            88988888887766655

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.45  E-value=0.007  Score=41.46  Aligned_cols=187  Identities=11%  Similarity=0.137  Sum_probs=111.1

Q ss_pred             EEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCCC-ceeeEE
Q 040370           25 VSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSA-NCVRSI  103 (228)
Q Consensus        25 ~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~-~~~~~~  103 (228)
                      .-.+|..+.||.-+ ..+++++|+++.+.++....     ..+|.--.|-.+. .|+-.. +..|+-|+++.. ++.+.+
T Consensus        68 AIMhP~~~IiALra-g~~LQiFnletK~klks~~~-----~e~VvfWkWis~~-~L~lVT-~taVYHW~~~g~s~P~k~f  139 (327)
T d1utca2          68 AIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-----TDDVTFWKWISLN-TVALVT-DNAVYHWSMEGESQPVKMF  139 (327)
T ss_dssp             EEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEEC-----SSCCCEEEESSSS-EEEEEC-SSEEEEEESSSSCCCEEEE
T ss_pred             hhcCCCCcEEEEec-CCeEEEEehhHhhhhceEEc-----CCCcEEEEecCCC-EEEEEc-CCceEEEcccCCCCchhhh
Confidence            44578888887655 45899999999888877766     4567777887544 444443 468999999654 344444


Q ss_pred             ecccc--cceeEEEEECCCCCEEEEee---C----CCeEEEEEccCCeeEEEEecce-----------------------
Q 040370          104 VGAHG--TAEATSANFTKDQRFVLSCG---K----DSTVKLWEVSSGRLVKQYLGAT-----------------------  151 (228)
Q Consensus       104 ~~~~~--~~~i~~~~~~~~~~~l~~~~---~----d~~i~~wd~~~~~~~~~~~~~~-----------------------  151 (228)
                      ..+..  ...|..-..+++.++++..+   .    .|.+.+|..+... .+.+++|.                       
T Consensus       140 dR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~~-sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r  218 (327)
T d1utca2         140 DRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHAASFAQFKMEGNAEESTLFCFAVR  218 (327)
T ss_dssp             ECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTE-EEEECCSEEEEEEECCTTCSSCEEEEEEEEE
T ss_pred             hhcccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccCc-CccccceeeeeEEEEcCCCCCCceEEEEEEC
Confidence            44321  34566667778888766443   1    2456777665421 11111100                       


Q ss_pred             -----------------------------------eeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCC
Q 040370          152 -----------------------------------HTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNH  196 (228)
Q Consensus       152 -----------------------------------~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~  196 (228)
                                                         .......+..++....++.... -|.+++||+.++.++..- .-.
T Consensus       219 ~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviTK-~G~i~lyDleTgt~i~~n-RIs  296 (327)
T d1utca2         219 GQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITK-YGYIHLYDLETGTCIYMN-RIS  296 (327)
T ss_dssp             ETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEET-TSEEEEEETTTCCEEEEE-ECC
T ss_pred             CCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEEec-CcEEEEEEcccccEEEEe-ecC
Confidence                                               0111123333334444444444 499999999999998876 344


Q ss_pred             CCCcEEEEeCCCCcEEEEecCCCCEE
Q 040370          197 IGAPRWIEHSPAEAAFITCGTDRSVR  222 (228)
Q Consensus       197 ~~~v~~~~~~~~~~~l~s~~~dg~i~  222 (228)
                      ...|...+-+.+..-++....+|.|.
T Consensus       297 ~~~iF~~a~~~~~~Gi~~VNr~GqVl  322 (327)
T d1utca2         297 GETIFVTAPHEATAGIIGVNRKGQVL  322 (327)
T ss_dssp             SSCEEEEEEETTTTEEEEEETTSEEE
T ss_pred             CCceEEeccCCCCceEEEECCCCeEE
Confidence            55665444444444455556777654

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.44  E-value=0.0077  Score=45.92  Aligned_cols=82  Identities=10%  Similarity=0.206  Sum_probs=49.6

Q ss_pred             CeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCC-
Q 040370           87 GAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTE-  165 (228)
Q Consensus        87 g~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  165 (228)
                      |.|.-||+.+++..-.....   .+..+-.++-.+.+++.|+.||.++-+|.++|+.+-++..... ....-+.+..+| 
T Consensus       453 G~l~A~D~~TG~~~W~~~~~---~~~~gg~lsTagglVF~G~~Dg~l~A~Da~TGe~LW~~~~~~~-~~a~P~tY~~dGk  528 (596)
T d1w6sa_         453 GQIKAYNAITGDYKWEKMER---FAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSG-AIGYPMTYTHKGT  528 (596)
T ss_dssp             EEEEEECTTTCCEEEEEEES---SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSC-CCSCCEEEEETTE
T ss_pred             ceEEEEeCCCCceecccCCC---CCCccceeEecCCEEEEECCCCeEEEEECCCCcEeeEEECCCC-cccCCeEEEECCE
Confidence            46777888888776554332   1111111122467888899999999999999999988865322 111223333355 


Q ss_pred             cEEEEee
Q 040370          166 EFVLSID  172 (228)
Q Consensus       166 ~~~~~~~  172 (228)
                      +|+++..
T Consensus       529 QYvav~~  535 (596)
T d1w6sa_         529 QYVAIYY  535 (596)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEe
Confidence            4555443

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=97.32  E-value=0.0068  Score=45.87  Aligned_cols=170  Identities=11%  Similarity=0.051  Sum_probs=96.0

Q ss_pred             CeEEEEEcccceEEeeeccceeee-----ccceeeEEeCCCC---CeEEEEecCCeEEEEeCCCCceeeEEecccc----
Q 040370           41 PIAHLYDVNTFQCYLSANVPEISV-----NGAINQVRYSSTG---GMYVTASKDGAIRLWDGVSANCVRSIVGAHG----  108 (228)
Q Consensus        41 ~~i~vw~~~~~~~~~~~~~~~~~~-----~~~i~~~~~~~~~---~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~----  108 (228)
                      ..|.-.|+++++.....+......     .....-+....++   ..++.+..+|.+.++|..+++.+........    
T Consensus       270 ~sivAld~~tG~~~W~~Q~~~~D~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~~~~lDr~tG~~i~~~~~~~~~~~~  349 (560)
T d1kv9a2         270 SSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAE  349 (560)
T ss_dssp             TEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEE
T ss_pred             eeeEEecCCccceeEEEeccccccccccccceeeeeeeecCCceeeeeeecCccceEEEEecCCCccccccccccccccc
Confidence            457777888888776655431100     0111111122233   3677788999999999999987755432110    


Q ss_pred             ------------------------------cceeEEEEECCCCCEEEEeeC-----------------------------
Q 040370          109 ------------------------------TAEATSANFTKDQRFVLSCGK-----------------------------  129 (228)
Q Consensus       109 ------------------------------~~~i~~~~~~~~~~~l~~~~~-----------------------------  129 (228)
                                                    ...-...+++|+...++....                             
T Consensus       350 ~~d~~~~~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yvp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  429 (560)
T d1kv9a2         350 KVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADAT  429 (560)
T ss_dssp             EECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCC
T ss_pred             ccChhhccccccccccccccceeeeeccccccccccccccCCCCeeecccccccceeeccccccccccccccccCccccc
Confidence                                          000113455666555554321                             


Q ss_pred             -------CCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEE
Q 040370          130 -------DSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRW  202 (228)
Q Consensus       130 -------d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~  202 (228)
                             .|.+.-+|+.+++.+-+.......   ..-...-.+..+++ +..||.++.+|.++|+.+-++.......-.-
T Consensus       430 ~~p~~~~~G~l~A~D~~tGk~~W~~~~~~~~---~gg~l~TagglVF~-G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P  505 (560)
T d1kv9a2         430 DVPAAVVSGALLAWDPVKQKAAWKVPYPTHW---NGGTLSTAGNLVFQ-GTAAGQMHAYSADKGEALWQFEAQSGIVAAP  505 (560)
T ss_dssp             CCCGGGCEEEEEEEETTTTEEEEEEEESSSC---CCCEEEETTTEEEE-ECTTSEEEEEETTTCCEEEEEECSSCCCSCC
T ss_pred             CCCCcccccceEEEeCCCCeEeeeccCCCCC---CCceeEECCCEEEE-ECCCCcEEEEECCCCcEeEEEECCCCccccC
Confidence                   256888999999887776532211   11112224566665 4568999999999999998875432222222


Q ss_pred             EEeCCCCc-EEEE
Q 040370          203 IEHSPAEA-AFIT  214 (228)
Q Consensus       203 ~~~~~~~~-~l~s  214 (228)
                      +.+..+|+ +|+.
T Consensus       506 ~ty~~dGkqyv~v  518 (560)
T d1kv9a2         506 MTFELAGRQYVAI  518 (560)
T ss_dssp             EEEEETTEEEEEE
T ss_pred             EEEEECCEEEEEE
Confidence            44445675 4443

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=97.28  E-value=0.0084  Score=38.86  Aligned_cols=187  Identities=12%  Similarity=0.083  Sum_probs=99.2

Q ss_pred             CCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEe-CCCCCeEEEE------ecCCeEEEEeCCCCceeeE
Q 040370           30 SGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRY-SSTGGMYVTA------SKDGAIRLWDGVSANCVRS  102 (228)
Q Consensus        30 ~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~l~~~------~~dg~v~iwd~~~~~~~~~  102 (228)
                      +.+.++.+...|.+.++-+..++.+...+       .+|....- .+.-.++.-.      -+-..+.+-++........
T Consensus        25 ~d~ll~~~~seG~vni~~l~g~~~vkLtk-------ePI~~~~~Pk~~ldfi~f~RDV~kGkE~Hai~~~Nlk~~GEE~~   97 (313)
T d2hu7a1          25 GDKLLVVGFSEGSVNAYLYDGGETVKLNR-------EPINSVLDPHYGVGRVILVRDVSKGAEQHALFKVNTSRPGEEQR   97 (313)
T ss_dssp             TTEEEEEEEETTEEEEEEESSSSCEECCS-------SCCSEECEECTTBSEEEEEEECSTTSCCEEEEEEETTSTTCEEE
T ss_pred             CCcEEEEEeccceEEEEEEeCCEEEEEec-------ccccCcCCCccCcceEEEEeehhcCcceeeEEEEccCCCCeeeE
Confidence            44577888889999999998887655433       23322211 1111111111      1122344444432222233


Q ss_pred             EecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecce-------eeeeeeEE-EECCCCcEEEEeeCC
Q 040370          103 IVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGAT-------HTQLRFQA-VFNDTEEFVLSIDEP  174 (228)
Q Consensus       103 ~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~-------~~~~~~~~-~~~~~~~~~~~~~~~  174 (228)
                      +.... ...|.+++.. +.+..++|+......+|-++.|+.......+.       ....+..+ .+.+....++++.-.
T Consensus        98 i~spk-~vRI~S~~yd-dk~vvF~Gased~~~LYviegGklrkL~~vPpFsFVtDI~~d~I~G~g~~~g~~~sfF~adl~  175 (313)
T d2hu7a1          98 LEAVK-PMRILSGVDT-GEAVVFTGATEDRVALYALDGGGLRELARLPGFGFVSDIRGDLIAGLGFFGGGRVSLFTSNLS  175 (313)
T ss_dssp             CTTSC-SBEEEEEEEC-SSCEEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEEETTEEEEEEEEETTEEEEEEEETT
T ss_pred             ecCCc-eEEEEEeeec-CceEEEecccCCceEEEEEeCCceeeeccCCCcceEEeccCCeEEEEeeecCCcceEEEEecc
Confidence            33221 3566677655 44567788877788899888776533221110       11112222 233444445555544


Q ss_pred             CCeEEEEEcCCcceeEEee---------------------c------------------CCCCCcEEEEeCCCCcEEEEe
Q 040370          175 SNEIVIWDALTAEKVAKWS---------------------S------------------NHIGAPRWIEHSPAEAAFITC  215 (228)
Q Consensus       175 d~~i~i~d~~~~~~~~~~~---------------------~------------------~~~~~v~~~~~~~~~~~l~s~  215 (228)
                      .|.+++++...|..-....                     .                  -..-.|+.+-+.|++++++.+
T Consensus       176 SG~lri~tpkeGS~~~ay~~~gnKV~sdyEt~gEsywit~D~~s~~yerve~P~kd~~sy~p~~I~~~~Y~Pdd~L~iia  255 (313)
T d2hu7a1         176 SGGLRVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVEDLELPSKDFSSYRPTAITWLGYLPDGRLAVVA  255 (313)
T ss_dssp             TEEEEEECCSSEEEEEEEECTTSCEEEEEEESSCEEEEEECTTTCCEEECCCSSCHHHHHCCSEEEEEEECTTSCEEEEE
T ss_pred             cCCEEEecCCCCcccceeEccCceeeeccCCCCceEEEEEecccCceeeeecCcccceeecceEEEeeeeCCCCcEEEEE
Confidence            5788888766553211110                     0                  012245666689999998888


Q ss_pred             cCCCCEEEee
Q 040370          216 GTDRSVRFWK  225 (228)
Q Consensus       216 ~~dg~i~vwd  225 (228)
                      -.||.=++|.
T Consensus       256 krdG~s~lF~  265 (313)
T d2hu7a1         256 RREGRSAVFI  265 (313)
T ss_dssp             EETTEEEEEE
T ss_pred             ecCCchheee
Confidence            8999877764

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=97.28  E-value=0.014  Score=41.21  Aligned_cols=187  Identities=12%  Similarity=0.172  Sum_probs=104.8

Q ss_pred             CCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEe------CCCCCeEEEEec--C--CeEEEEeCCC-C
Q 040370           29 PSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRY------SSTGGMYVTASK--D--GAIRLWDGVS-A   97 (228)
Q Consensus        29 ~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~------~~~~~~l~~~~~--d--g~v~iwd~~~-~   97 (228)
                      |+..+++....++-|.+||++ |+.+....      .++++.+..      ......++.++.  +  ..|.+|.+.. .
T Consensus        38 p~~SlI~gTdK~~Gl~vYdL~-G~~l~~~~------~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~  110 (353)
T d1h6la_          38 PQNSKLITTNKKSGLAVYSLE-GKMLHSYH------TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKN  110 (353)
T ss_dssp             GGGCEEEEEETTSCCEEEETT-CCEEEECC------SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTT
T ss_pred             cCccEEEEEcCcCCEEEEcCC-CcEEEecc------cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCcc
Confidence            345677766777779999996 66655554      234444433      222233555553  2  3677887753 2


Q ss_pred             ceeeEEeccc-----ccceeEEEEE--CCC-CC-EEEEeeCCCeEEEEEccC---C----eeEEEEecceeeeeeeEEEE
Q 040370           98 NCVRSIVGAH-----GTAEATSANF--TKD-QR-FVLSCGKDSTVKLWEVSS---G----RLVKQYLGATHTQLRFQAVF  161 (228)
Q Consensus        98 ~~~~~~~~~~-----~~~~i~~~~~--~~~-~~-~l~~~~~d~~i~~wd~~~---~----~~~~~~~~~~~~~~~~~~~~  161 (228)
                      ..+..+....     ....+..+|+  ++. +. +++....+|.+..|.+..   +    +.++.+.   .......+.+
T Consensus       111 ~~l~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~---~~~q~EGCVv  187 (353)
T d1h6la_         111 GTLQSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFK---MNSQTEGMAA  187 (353)
T ss_dssp             TEEEECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEE---CSSCEEEEEE
T ss_pred             cccccccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccC---CCCccceEEE
Confidence            2233222210     1223556666  664 43 567777889998887742   2    2344443   2345667788


Q ss_pred             CCCCcEEEEeeCCCCeEEEEEcCCc-----ceeEEeec-CCCCCcEEEEeCC----CCcEEEEecCCCCEEEeee
Q 040370          162 NDTEEFVLSIDEPSNEIVIWDALTA-----EKVAKWSS-NHIGAPRWIEHSP----AEAAFITCGTDRSVRFWKE  226 (228)
Q Consensus       162 ~~~~~~~~~~~~~d~~i~i~d~~~~-----~~~~~~~~-~~~~~v~~~~~~~----~~~~l~s~~~dg~i~vwd~  226 (228)
                      .+....++.+-. +..+..++....     ..+..... .....+-.|+.-.    +|-+|+|.-.+++..+||.
T Consensus       188 Dde~~~LyisEE-~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr  261 (353)
T d1h6la_         188 DDEYGSLYIAEE-DEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYER  261 (353)
T ss_dssp             ETTTTEEEEEET-TTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEES
T ss_pred             eCCCCcEEEecC-ccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEec
Confidence            888888888655 566666665421     11212111 2345677776543    2334555556788999985

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=97.21  E-value=0.0086  Score=45.45  Aligned_cols=76  Identities=9%  Similarity=0.039  Sum_probs=45.4

Q ss_pred             CeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCc
Q 040370          131 STVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEA  210 (228)
Q Consensus       131 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~  210 (228)
                      |.+.-||+.+++.+-+......   ...-...-.+..+++ +..|+.++.+|.++|+.+-++.......-.-+.+..+|+
T Consensus       457 G~l~AiD~~tGk~~W~~~~~~p---~~gg~lstagglVF~-G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~Gk  532 (573)
T d1kb0a2         457 GRLLAWDPVAQKAAWSVEHVSP---WNGGTLTTAGNVVFQ-GTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGR  532 (573)
T ss_dssp             EEEEEEETTTTEEEEEEEESSS---CCCCEEEETTTEEEE-ECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTE
T ss_pred             ccEEEeCCCCCceEeeecCCCC---CCCceEEEcCCEEEE-ECCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCE
Confidence            3577788888887776653211   111112224666776 455899999999999999887433211111144444676

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.12  E-value=0.032  Score=42.25  Aligned_cols=160  Identities=9%  Similarity=0.049  Sum_probs=93.7

Q ss_pred             CCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEe------cCCeEEEEeCCCCceeeEEe
Q 040370           31 GDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTAS------KDGAIRLWDGVSANCVRSIV  104 (228)
Q Consensus        31 ~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~------~dg~v~iwd~~~~~~~~~~~  104 (228)
                      +..++.++.|+.+.-.|.++|+..........+....++.--.-.++ .++.+.      .+|.|+-+|+++|+.+-.+.
T Consensus       115 ~~~i~~~~~~g~l~alda~tG~~~w~~~~~~~~~~~~~t~~p~v~~~-~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~  193 (571)
T d2ad6a1         115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKD-TVLMGCSGAELGVRGAVNAFDLKTGELKWRAF  193 (571)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETT-EEEEECBCGGGTCCCEEEEEETTTCCEEEEEE
T ss_pred             CCeEEEEeCCCcEEeeehhhhhhhccccccccccccceeecCeEeCC-eEEEeeccccccccCcEEEEECCCCcEEEEEe
Confidence            34677788899999999999987766544321111112111111133 445554      36889999999999887764


Q ss_pred             cccc-----------------------------------ccee-EEEEECCCCCEEEEeeC----------------CCe
Q 040370          105 GAHG-----------------------------------TAEA-TSANFTKDQRFVLSCGK----------------DST  132 (228)
Q Consensus       105 ~~~~-----------------------------------~~~i-~~~~~~~~~~~l~~~~~----------------d~~  132 (228)
                      ....                                   ...+ ...++.+....++.+..                ...
T Consensus       194 t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~g~~y~~tg~~~p~~~~~r~g~n~~s~s  273 (571)
T d2ad6a1         194 ATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMT  273 (571)
T ss_dssp             SSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTE
T ss_pred             ccCCcccccccccccccccccCcccccccccCCcccccCCCccccccccchhcCeeeeecccccCccccccccccccccc
Confidence            3210                                   0111 22455666655554433                346


Q ss_pred             EEEEEccCCeeEEEEecceee---------eeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEE
Q 040370          133 VKLWEVSSGRLVKQYLGATHT---------QLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAK  191 (228)
Q Consensus       133 i~~wd~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~  191 (228)
                      +.-.|.++++.+-.++...+.         .....+........++.....+|.++++|..+++.+..
T Consensus       274 vvAld~~TG~~~W~~q~~~~D~Wd~D~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr~tG~~i~~  341 (571)
T d2ad6a1         274 IWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVA  341 (571)
T ss_dssp             EEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEE
T ss_pred             eeeeeccchhheecccccCccccccccccccceeeeeccCccccceeeccccceEEEEecCCCcEeee
Confidence            778899999988777643221         11122222222233445555689999999999987644

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.90  E-value=0.041  Score=39.93  Aligned_cols=102  Identities=12%  Similarity=0.108  Sum_probs=65.5

Q ss_pred             ceEEEEEeCCCCEEEEe-----cCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecC---------
Q 040370           21 NVRSVSFHPSGDFLLAG-----TDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKD---------   86 (228)
Q Consensus        21 ~v~~~~~~~~~~~l~~~-----~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---------   86 (228)
                      .+...+++|+++++|.+     ++.-.+++.|+.+++.+.... .    ......++|.++++.|+-...+         
T Consensus       126 ~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i-~----~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~  200 (430)
T d1qfma1         126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVL-E----RVKFSCMAWTHDGKGMFYNAYPQQDGKSDGT  200 (430)
T ss_dssp             EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEE-E----EECSCCEEECTTSSEEEEEECCCCSSCCSSS
T ss_pred             eecceEecCCCCEEEEEeccccCchheeEEeccCcceeccccc-c----cccccceEEcCCCCEEEEEEeccccCccccc
Confidence            44567889999998843     334579999999998654221 1    2223678999999977654332         


Q ss_pred             -------CeEEEEeCCCCcee--eEEecccccceeEEEEECCCCCEEEEe
Q 040370           87 -------GAIRLWDGVSANCV--RSIVGAHGTAEATSANFTKDQRFVLSC  127 (228)
Q Consensus        87 -------g~v~iwd~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~  127 (228)
                             ..|..+.+.+....  ..+........+..+..++++++++..
T Consensus       201 ~~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~  250 (430)
T d1qfma1         201 ETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLS  250 (430)
T ss_dssp             CCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEE
T ss_pred             ccccCCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEE
Confidence                   25777777765432  222222223456677789999987643

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=96.78  E-value=0.066  Score=40.67  Aligned_cols=169  Identities=7%  Similarity=0.012  Sum_probs=93.5

Q ss_pred             CeEEEEEcccceEEeeeccceeee-----ccceeeEEe-CCCCC---eEEEEecCCeEEEEeCCCCceeeEEecccc---
Q 040370           41 PIAHLYDVNTFQCYLSANVPEISV-----NGAINQVRY-SSTGG---MYVTASKDGAIRLWDGVSANCVRSIVGAHG---  108 (228)
Q Consensus        41 ~~i~vw~~~~~~~~~~~~~~~~~~-----~~~i~~~~~-~~~~~---~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~---  108 (228)
                      ..|.-.|+++++.+..++......     ......+.. ..+|+   .++....+|.+.++|-.+++.+........   
T Consensus       278 ~sivAlD~~TG~~~W~~Q~~~~D~Wd~d~~~~~~l~d~~~~~G~~~~~v~~~~k~G~~~vlDr~tG~~i~~~~~~~~~~~  357 (596)
T d1w6sa_         278 MTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNV  357 (596)
T ss_dssp             SEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCS
T ss_pred             ccccccccccccccccccceeccccCCccccceeeeeccccccccccceeccccccceeeecCCCCceeeeccccccccc
Confidence            457788999999877665432100     111111221 22343   677889999999999999987754321100   


Q ss_pred             --------cc--------------------------eeEEEEECCCCCEEEEeeC-------------------------
Q 040370          109 --------TA--------------------------EATSANFTKDQRFVLSCGK-------------------------  129 (228)
Q Consensus       109 --------~~--------------------------~i~~~~~~~~~~~l~~~~~-------------------------  129 (228)
                              ..                          .-...+++|+..+++....                         
T Consensus       358 ~~~~d~~~~~p~~~~~~~~~~~~~~~~i~pg~~Gg~nw~~~a~dp~~~l~yvp~~~~~~~~~~~~~~~~~g~~~~g~~~~  437 (596)
T d1w6sa_         358 FKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLN  437 (596)
T ss_dssp             EEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEE
T ss_pred             cccccccccccccCccccccCCccceeEecccccccccCccccCCCCceEEecccccccccccccccccccccccccccc
Confidence                    00                          0012345555444443321                         


Q ss_pred             --------------CCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecC
Q 040370          130 --------------DSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSN  195 (228)
Q Consensus       130 --------------d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~  195 (228)
                                    -|.|.-||+.+++.+-+....   .....-.....+..++. +..||.++.+|.++|+.+-++...
T Consensus       438 ~~~~~~g~~~~~~~~G~l~A~D~~TG~~~W~~~~~---~~~~gg~lsTagglVF~-G~~Dg~l~A~Da~TGe~LW~~~~~  513 (596)
T d1w6sa_         438 MYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMER---FAVWGGTMATAGDLVFY-GTLDGYLKARDSDTGDLLWKFKIP  513 (596)
T ss_dssp             EEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEES---SCCCSBCEEETTTEEEE-ECTTSEEEEEETTTCCEEEEEECS
T ss_pred             cccCcccCcccCCCcceEEEEeCCCCceecccCCC---CCCccceeEecCCEEEE-ECCCCeEEEEECCCCcEeeEEECC
Confidence                          146777888888776554321   11111112224566666 566899999999999999887543


Q ss_pred             CCCCcEEEEeCCCCc-EEE
Q 040370          196 HIGAPRWIEHSPAEA-AFI  213 (228)
Q Consensus       196 ~~~~v~~~~~~~~~~-~l~  213 (228)
                      ....-.-+.+..+|+ |++
T Consensus       514 ~~~~a~P~tY~~dGkQYva  532 (596)
T d1w6sa_         514 SGAIGYPMTYTHKGTQYVA  532 (596)
T ss_dssp             SCCCSCCEEEEETTEEEEE
T ss_pred             CCcccCCeEEEECCEEEEE
Confidence            222222244445675 444

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.78  E-value=0.066  Score=40.56  Aligned_cols=79  Identities=11%  Similarity=0.103  Sum_probs=49.6

Q ss_pred             CeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCc
Q 040370          131 STVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEA  210 (228)
Q Consensus       131 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~  210 (228)
                      |.+.-+|+.+++.+-+.....   ....-.....+..+++ ++.||.++.+|.++|+.+-++.......-.-+.+..+|+
T Consensus       466 G~l~AiD~~TG~i~W~~~~~~---p~~~g~lstagglVF~-Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G~  541 (582)
T d1flga_         466 GSLRAMDPVSGKVVWEHKEHL---PLWAGVLATAGNLVFT-GTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGE  541 (582)
T ss_dssp             EEEEEECTTTCCEEEEEEESS---CCCSCCEEETTTEEEE-ECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTE
T ss_pred             CeEEEEcCCCCcEEeecCCCC---CCccceeEEcCCeEEE-eCCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCE
Confidence            567778888888776665321   1111112234566666 566899999999999999887543332222255666775


Q ss_pred             -EEE
Q 040370          211 -AFI  213 (228)
Q Consensus       211 -~l~  213 (228)
                       |++
T Consensus       542 qYv~  545 (582)
T d1flga_         542 QYLG  545 (582)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence             444

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.39  E-value=0.073  Score=36.39  Aligned_cols=119  Identities=11%  Similarity=0.026  Sum_probs=80.1

Q ss_pred             CCeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCCC
Q 040370           86 DGAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTE  165 (228)
Q Consensus        86 dg~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (228)
                      ...|.|.|+.++....+....     .-+.-.+|..+.|+.-+ ..++.++|+++.+.+..+..   ...+.-..|-.+.
T Consensus        44 ~~~VvIidl~n~~~~~Rrpi~-----AdsAIMhP~~~IiALra-g~~LQiFnletK~klks~~~---~e~VvfWkWis~~  114 (327)
T d1utca2          44 QAQVVIIDMNDPSNPIRRPIS-----ADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM---TDDVTFWKWISLN  114 (327)
T ss_dssp             EEEEEEEETTSTTSCEEEECC-----CSEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEEC---SSCCCEEEESSSS
T ss_pred             CceEEEEECCCCCcceecccc-----hhhhhcCCCCcEEEEec-CCeEEEEehhHhhhhceEEc---CCCcEEEEecCCC
Confidence            347889999876644333321     12344689888887765 56899999999888887764   4456677777766


Q ss_pred             cEEEEeeCCCCeEEEEEcCCcceeEEeecCC----CCCcEEEEeCCCCcEEEEec
Q 040370          166 EFVLSIDEPSNEIVIWDALTAEKVAKWSSNH----IGAPRWIEHSPAEAAFITCG  216 (228)
Q Consensus       166 ~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~s~~  216 (228)
                      ..-+++   +..|+-|++.....+......|    ...|..-..++++++++..|
T Consensus       115 ~L~lVT---~taVYHW~~~g~s~P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~G  166 (327)
T d1utca2         115 TVALVT---DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTG  166 (327)
T ss_dssp             EEEEEC---SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEE
T ss_pred             EEEEEc---CCceEEEcccCCCCchhhhhhcccccCceEEEEEECCCCCEEEEEe
Confidence            666664   3789999996544333332333    34677778888888877554

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=96.35  E-value=0.088  Score=36.87  Aligned_cols=190  Identities=7%  Similarity=-0.018  Sum_probs=103.8

Q ss_pred             ceEEEEEeCCCCEEEEecC------------CCeEEEEEcccceEEeeeccceee----eccceeeEEe--CCCCC-eEE
Q 040370           21 NVRSVSFHPSGDFLLAGTD------------HPIAHLYDVNTFQCYLSANVPEIS----VNGAINQVRY--SSTGG-MYV   81 (228)
Q Consensus        21 ~v~~~~~~~~~~~l~~~~~------------d~~i~vw~~~~~~~~~~~~~~~~~----~~~~i~~~~~--~~~~~-~l~   81 (228)
                      ..-.++..|+|..+++++.            .|.|.++|+++.+...........    ..-....+..  .++++ +|+
T Consensus        36 G~EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~  115 (340)
T d1v04a_          36 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL  115 (340)
T ss_dssp             CCCEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEE
T ss_pred             CcceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEE
Confidence            3456888899887776542            489999998765422111110000    0011233332  34555 344


Q ss_pred             EEe---cCCeEEEEeCCCCce-e---eEEecccccceeEEEEECCCCCEEEEeeC---------------CCeEEEEEcc
Q 040370           82 TAS---KDGAIRLWDGVSANC-V---RSIVGAHGTAEATSANFTKDQRFVLSCGK---------------DSTVKLWEVS  139 (228)
Q Consensus        82 ~~~---~dg~v~iwd~~~~~~-~---~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---------------d~~i~~wd~~  139 (228)
                      +..   ...+|.+|++..... +   .++... .....+.+.+..++..++|-..               -+...+|...
T Consensus       116 vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~~-~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~  194 (340)
T d1v04a_         116 VVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHK-LLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYS  194 (340)
T ss_dssp             EEECSTTCCEEEEEEEETTTTEEEEEEEECCT-TCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEEC
T ss_pred             EEeccCCCceeEEEEEeCCCCeEEEEeecCCc-cccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEc
Confidence            442   346788887754332 1   222222 2345688888888887777321               1233444443


Q ss_pred             CCeeEEEEecceeeeeeeEEEECCCCcEEEEeeCCCCeEEEEEcCCcceeEEe-ecCCCCCcEEEEeCC-CCcEEEE
Q 040370          140 SGRLVKQYLGATHTQLRFQAVFNDTEEFVLSIDEPSNEIVIWDALTAEKVAKW-SSNHIGAPRWIEHSP-AEAAFIT  214 (228)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~-~~~~~~~v~~~~~~~-~~~~l~s  214 (228)
                      .++......   .-.....++++|++++++++....+.|++|++......... ...-.+.+-.+.+.+ ++.+.+.
T Consensus       195 ~~~~~~~~~---~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~~~g~lwva  268 (340)
T d1v04a_         195 PNDVRVVAE---GFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVG  268 (340)
T ss_dssp             SSCEEEEEE---EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEE
T ss_pred             CCceEEEcC---CCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEecCCCCCCccEEecCCCEEEEE
Confidence            333222221   33456778899999999888887899999998754332221 112345566777776 4444443

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.32  E-value=0.064  Score=38.87  Aligned_cols=101  Identities=11%  Similarity=0.097  Sum_probs=63.6

Q ss_pred             eeeEEeCCCCCeEEEE-ecC----CeEEEEeCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCC------------
Q 040370           68 INQVRYSSTGGMYVTA-SKD----GAIRLWDGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKD------------  130 (228)
Q Consensus        68 i~~~~~~~~~~~l~~~-~~d----g~v~iwd~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d------------  130 (228)
                      +...+++|++++++.+ +.+    -.++++|+.+++.+.....   ......+.|.++++.|+....+            
T Consensus       127 ~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~---~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~  203 (430)
T d1qfma1         127 LRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLE---RVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETS  203 (430)
T ss_dssp             EEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEE---EECSCCEEECTTSSEEEEEECCCCSSCCSSSCCC
T ss_pred             ecceEecCCCCEEEEEeccccCchheeEEeccCcceecccccc---cccccceEEcCCCCEEEEEEeccccCcccccccc
Confidence            4456789999987743 333    3699999999987643221   1122568899999987654322            


Q ss_pred             ----CeEEEEEccCCee--EEEEecceeeeeeeEEEECCCCcEEEEe
Q 040370          131 ----STVKLWEVSSGRL--VKQYLGATHTQLRFQAVFNDTEEFVLSI  171 (228)
Q Consensus       131 ----~~i~~wd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (228)
                          ..|..+.+.+...  ...+...........+..++++++++..
T Consensus       204 ~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~  250 (430)
T d1qfma1         204 TNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLS  250 (430)
T ss_dssp             CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEE
T ss_pred             cCCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEE
Confidence                2578888776533  2233322233345567778899887754

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=95.62  E-value=0.25  Score=35.98  Aligned_cols=108  Identities=12%  Similarity=0.182  Sum_probs=61.8

Q ss_pred             cceeeEEeCCCCCeEEEEecCCeEEEEeCCCCceeeEEec------ccccceeEEEEECCC---CCEEEEeeC-------
Q 040370           66 GAINQVRYSSTGGMYVTASKDGAIRLWDGVSANCVRSIVG------AHGTAEATSANFTKD---QRFVLSCGK-------  129 (228)
Q Consensus        66 ~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~------~~~~~~i~~~~~~~~---~~~l~~~~~-------  129 (228)
                      ...++|+|.|+++++++--..|.|++++..+++.......      .........++++|+   ..++.....       
T Consensus        27 ~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pdf~~n~~iYvsyt~~~~~~~  106 (450)
T d1crua_          27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST  106 (450)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred             CCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCCCccCCEEEEEEecCCCCCc
Confidence            3567999999999887765579999999877654332221      122456788999984   344443211       


Q ss_pred             C----C--eEEEEEccCCe-------eEEEEecceeeeeeeEEEECCCCcEEEEeeC
Q 040370          130 D----S--TVKLWEVSSGR-------LVKQYLGATHTQLRFQAVFNDTEEFVLSIDE  173 (228)
Q Consensus       130 d----~--~i~~wd~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (228)
                      +    .  .+..+......       .+..............+.|.|++.+.++.|.
T Consensus       107 ~~~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~p~~~~H~gg~l~fgpDG~LYvs~Gd  163 (450)
T d1crua_         107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD  163 (450)
T ss_dssp             -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred             ccccccceEEEeeecccccccccceEEEeecccccccccccceeEcCCCCEEEEecC
Confidence            1    1  23333333221       1111111112233467889999987777764

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=95.08  E-value=0.32  Score=34.05  Aligned_cols=149  Identities=12%  Similarity=0.193  Sum_probs=85.9

Q ss_pred             CeEEEEEcccc-eEEeeeccce---eeeccceeeEEe--CCC-CC-eEEEEecCCeEEEEeCC---CC----ceeeEEec
Q 040370           41 PIAHLYDVNTF-QCYLSANVPE---ISVNGAINQVRY--SST-GG-MYVTASKDGAIRLWDGV---SA----NCVRSIVG  105 (228)
Q Consensus        41 ~~i~vw~~~~~-~~~~~~~~~~---~~~~~~i~~~~~--~~~-~~-~l~~~~~dg~v~iwd~~---~~----~~~~~~~~  105 (228)
                      .+|.+|.+... ..+.......   ..-...+..+++  +|. +. +++....+|.+..|.+.   ++    +.++.+..
T Consensus        99 ~~l~~~~id~~~~~l~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~  178 (353)
T d1h6la_          99 NTIEIYAIDGKNGTLQSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKM  178 (353)
T ss_dssp             CEEEEEEEETTTTEEEECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEEC
T ss_pred             eeEEEEEecCcccccccccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCC
Confidence            36788877532 2222222111   000234677777  664 44 56677788999888763   22    23444544


Q ss_pred             ccccceeEEEEECCCCCEEEEeeCCCeEEEEEccC-----CeeEEEEecceeeeee--eEEEECCC-CcEEEEeeCCCCe
Q 040370          106 AHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSS-----GRLVKQYLGATHTQLR--FQAVFNDT-EEFVLSIDEPSNE  177 (228)
Q Consensus       106 ~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~-----~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~d~~  177 (228)
                         ...+..|.+.+..+.|+.+-++..|+.++...     ...+....+.....-+  ..+...++ ..|+++++..+++
T Consensus       179 ---~~q~EGCVvDde~~~LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~  255 (353)
T d1h6la_         179 ---NSQTEGMAADDEYGSLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSS  255 (353)
T ss_dssp             ---SSCEEEEEEETTTTEEEEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTE
T ss_pred             ---CCccceEEEeCCCCcEEEecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCe
Confidence               55788999999989999998887777776642     1222111111111111  22223333 4588888777899


Q ss_pred             EEEEEcCCc-ceeEEe
Q 040370          178 IVIWDALTA-EKVAKW  192 (228)
Q Consensus       178 i~i~d~~~~-~~~~~~  192 (228)
                      ..+||.... +.+..+
T Consensus       256 f~vydr~~~~~~~g~F  271 (353)
T d1h6la_         256 YAIYERQGQNKYVADF  271 (353)
T ss_dssp             EEEEESSTTCCEEEEE
T ss_pred             EEEEecCCCccccceE
Confidence            999998764 445444

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.56  E-value=0.48  Score=33.54  Aligned_cols=183  Identities=7%  Similarity=0.024  Sum_probs=100.4

Q ss_pred             cceEEEEEeCCCCEEEEecCCCeEEEEEcccce-------EEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEE
Q 040370           20 HNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQ-------CYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLW   92 (228)
Q Consensus        20 ~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~-------~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iw   92 (228)
                      ....-++.++...++++|+.++ +.|..++.-+       ....+ ..... -..|..++|+.+  .++.. .++.+..+
T Consensus        37 ~~~~LLAVsn~~GLl~aa~~~~-l~V~~t~~l~~~~~~~~~~~~~-~~~~~-ip~v~~vafs~d--~l~v~-~~~~l~~~  110 (381)
T d1xipa_          37 ASLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTF-KWEKE-IPDVIFVCFHGD--QVLVS-TRNALYSL  110 (381)
T ss_dssp             SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCC-SEEEE-CTTEEEEEEETT--EEEEE-ESSEEEEE
T ss_pred             cccceEEEeCCCCEEEEECCCE-EEEEEHHHHHHHhhccCCCCcc-eeccC-CCCeEEEEeeCC--EEEEE-eCCCEEEE
Confidence            4566788888777888888775 5677653211       00011 11111 345788999744  45444 45678888


Q ss_pred             eCCCCceeeEEecccccceeEEEEECCCCCEEEEeeCCCeEEEEEccCCeeEEEEec---ceeeeeeeEEEECCCCcEEE
Q 040370           93 DGVSANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKDSTVKLWEVSSGRLVKQYLG---ATHTQLRFQAVFNDTEEFVL  169 (228)
Q Consensus        93 d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~  169 (228)
                      +...-.........  ..++..+.++|.  .++....++.+.++++.+++......+   ..-.....+++|++.+..++
T Consensus       111 ~~~~l~~~~~~~~~--~~~~~~~~~~p~--~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~ws~kgkq~v  186 (381)
T d1xipa_         111 DLEELSEFRTVTSF--EKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQLAQNVTSFDVTNSQLAVLLKDRSFQSF  186 (381)
T ss_dssp             ESSSTTCEEEEEEC--SSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEEEEESEEEEEECSSEEEEEETTSCEEEE
T ss_pred             Eeeccccccccccc--cccccceecCCc--eeEEEecCCCEEEEEeccCccccccCCcceEEecCCceEEEEeCCcEEEE
Confidence            87665444333332  456777887775  466666789999999988764332211   11223455667777776666


Q ss_pred             EeeCCCCeEEEE-EcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEe
Q 040370          170 SIDEPSNEIVIW-DALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITC  215 (228)
Q Consensus       170 ~~~~~d~~i~i~-d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~  215 (228)
                      ++.+  +...+- ++.....+... ......|.+|.|-.+..+++.-
T Consensus       187 ~~~g--~~~q~k~~i~~~~~~~~p-~~~~~~v~sI~WL~~~~F~vvy  230 (381)
T d1xipa_         187 AWRN--GEMEKQFEFSLPSELEEL-PVEEYSPLSVTILSPQDFLAVF  230 (381)
T ss_dssp             EEET--TEEEEEEEECCCHHHHTS-CTTTSEEEEEEESSSSEEEEEE
T ss_pred             EeCC--CceeeccCCCCccccCCC-cCCCcceeEEEEecCceEEEEE
Confidence            6432  222111 11111100000 1234467888888776666544

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=94.45  E-value=0.58  Score=33.98  Aligned_cols=59  Identities=10%  Similarity=0.118  Sum_probs=41.2

Q ss_pred             cCcceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeecccee----eeccceeeEEeCCC
Q 040370           18 DTHNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEI----SVNGAINQVRYSST   76 (228)
Q Consensus        18 ~~~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~----~~~~~i~~~~~~~~   76 (228)
                      .-...++|+|.|++++|++--..|.|++++..+++.......+..    .-......|+|+|+
T Consensus        25 ~L~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd   87 (450)
T d1crua_          25 NLNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD   87 (450)
T ss_dssp             CCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred             CCCCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCC
Confidence            346778999999999888775679999998877764433322111    11356788999985

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.23  E-value=0.44  Score=31.75  Aligned_cols=188  Identities=11%  Similarity=0.017  Sum_probs=80.5

Q ss_pred             CCCEEEEecC---------CCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCe-----EEEEeCC
Q 040370           30 SGDFLLAGTD---------HPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGA-----IRLWDGV   95 (228)
Q Consensus        30 ~~~~l~~~~~---------d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~-----v~iwd~~   95 (228)
                      +++.++.|+.         -..+.+||..+.+.......+..  ...-.++.+  +++.++.++.++.     ...+|..
T Consensus        50 ~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~w~~~~~~p~~--r~~~~~~~~--~~~i~~~gg~~~~~~~~~~~~~~~~  125 (288)
T d1zgka1          50 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVP--RNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPE  125 (288)
T ss_dssp             TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSC--CBTCEEEEE--TTEEEEECCEETTEECCCEEEEETT
T ss_pred             CCEEEEEeCcccCCCCccccchhhhcccccccccccccccce--ecceecccc--ceeeEEecceecccccceeeeeccc
Confidence            4556666552         13567888777654433322211  111122222  4555555554333     4445655


Q ss_pred             CCceeeEEecccccceeEEEEECCCCCEEEEeeCC-----CeEEEEEccCCeeEEEEecceeeeeeeEEEECCCCcEEEE
Q 040370           96 SANCVRSIVGAHGTAEATSANFTKDQRFVLSCGKD-----STVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDTEEFVLS  170 (228)
Q Consensus        96 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (228)
                      +............... .+.... ++..++.|+.+     ..+..||..+.+....-... ........... .+...+.
T Consensus       126 ~~~~~~~~~~~~~r~~-~~~~~~-~~~~~~~GG~~~~~~~~~~~~~d~~~~~~~~~~~~~-~~~~~~~~~~~-~~~i~i~  201 (288)
T d1zgka1         126 RDEWHLVAPMLTRRIG-VGVAVL-NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMN-TIRSGAGVCVL-HNCIYAA  201 (288)
T ss_dssp             TTEEEECCCCSSCCBS-CEEEEE-TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCS-SCCBSCEEEEE-TTEEEEE
T ss_pred             cCcccccccccccccc-ceeeee-eecceEecCcccccccceEEEeeccccccccccccc-cccccccccce-eeeEEEe
Confidence            5433221111110111 112222 34455555543     35788888765543222111 11111122222 2333333


Q ss_pred             eeCC----CCeEEEEEcCCcceeEEeecCCCCCcEEEEeCCCCcEEEEecCCCC-----EEEeee
Q 040370          171 IDEP----SNEIVIWDALTAEKVAKWSSNHIGAPRWIEHSPAEAAFITCGTDRS-----VRFWKE  226 (228)
Q Consensus       171 ~~~~----d~~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~-----i~vwd~  226 (228)
                      ++..    -.....+|..+.+....-.......-.+++. .++++++.||.++.     +.+||+
T Consensus       202 GG~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~-~~~~l~v~GG~~~~~~~~~v~~yd~  265 (288)
T d1zgka1         202 GGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITV-HQGRIYVLGGYDGHTFLDSVECYDP  265 (288)
T ss_dssp             CCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCBCSSCBCCEEEEEET
T ss_pred             cCccccccccceeeeeecceeeecccCccCcccceEEEE-ECCEEEEEecCCCCeecceEEEEEC
Confidence            3321    1356777776654433211111111112222 26788888876543     566765

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=93.93  E-value=0.45  Score=30.77  Aligned_cols=76  Identities=14%  Similarity=0.187  Sum_probs=43.1

Q ss_pred             ceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeee-----ccceeeEEe-CCCCCeEEEEec-CCeEEEEe
Q 040370           21 NVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISV-----NGAINQVRY-SSTGGMYVTASK-DGAIRLWD   93 (228)
Q Consensus        21 ~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~-----~~~i~~~~~-~~~~~~l~~~~~-dg~v~iwd   93 (228)
                      .|.++++. +.+...+|+......+|-++.|+.......+....     ..-|..+.+ .+..+-++++.- .|.+++++
T Consensus       105 RI~S~~yd-dk~vvF~Gased~~~LYviegGklrkL~~vPpFsFVtDI~~d~I~G~g~~~g~~~sfF~adl~SG~lri~t  183 (313)
T d2hu7a1         105 RILSGVDT-GEAVVFTGATEDRVALYALDGGGLRELARLPGFGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRVFD  183 (313)
T ss_dssp             EEEEEEEC-SSCEEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEEETTEEEEEEEEETTEEEEEEEETTTEEEEEEC
T ss_pred             EEEEeeec-CceEEEecccCCceEEEEEeCCceeeeccCCCcceEEeccCCeEEEEeeecCCcceEEEEecccCCEEEec
Confidence            45566653 44455677777778899999988665544432211     222333333 233334555555 67777777


Q ss_pred             CCCC
Q 040370           94 GVSA   97 (228)
Q Consensus        94 ~~~~   97 (228)
                      ...|
T Consensus       184 pkeG  187 (313)
T d2hu7a1         184 SGEG  187 (313)
T ss_dssp             CSSE
T ss_pred             CCCC
Confidence            6544

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=92.19  E-value=1.2  Score=30.89  Aligned_cols=126  Identities=8%  Similarity=0.085  Sum_probs=67.1

Q ss_pred             CCCeEEEEEcccce--EEeeeccceeeeccceeeEEeCCCCCeEEEEe-----------------cCCeEEEEeCCCCce
Q 040370           39 DHPIAHLYDVNTFQ--CYLSANVPEISVNGAINQVRYSSTGGMYVTAS-----------------KDGAIRLWDGVSANC   99 (228)
Q Consensus        39 ~d~~i~vw~~~~~~--~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-----------------~dg~v~iwd~~~~~~   99 (228)
                      ...+|.++++....  ........ .......+++....++.+++|-.                 .-+.+.-||.  ++.
T Consensus       122 ~~~~ieif~~~~~~~~l~~~~~v~-~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~--~~~  198 (340)
T d1v04a_         122 SSSTVEVFKFQEEEKSLLHLKTIR-HKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--NDV  198 (340)
T ss_dssp             TCCEEEEEEEETTTTEEEEEEEEC-CTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECS--SCE
T ss_pred             CCceeEEEEEeCCCCeEEEEeecC-CccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcC--Cce
Confidence            45678888876432  11111111 11134578888888888777731                 1233444443  332


Q ss_pred             eeEEecccccceeEEEEECCCCCEEEEe-eCCCeEEEEEccCCeeEEEEecceeeeeeeEEEECCC-CcEEEE
Q 040370          100 VRSIVGAHGTAEATSANFTKDQRFVLSC-GKDSTVKLWEVSSGRLVKQYLGATHTQLRFQAVFNDT-EEFVLS  170 (228)
Q Consensus       100 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  170 (228)
                      ......   -...+.++++|++++|+.+ +..+.|+.|++.....+.......-....-.+.+.+. +.+.++
T Consensus       199 ~~~~~~---l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~~~g~lwva  268 (340)
T d1v04a_         199 RVVAEG---FDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVG  268 (340)
T ss_dssp             EEEEEE---ESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEE
T ss_pred             EEEcCC---CCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEecCCCCCCccEEecCCCEEEEE
Confidence            222222   3457899999999876554 5677899999875443322221112333445566554 344333

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.90  E-value=1.4  Score=31.09  Aligned_cols=100  Identities=11%  Similarity=0.055  Sum_probs=60.2

Q ss_pred             cceEEEEEeCCCCEEEEecCCCeEEEEEcccceEEeeeccceeeeccceeeEEeCCCCCeEEEEecCCeEEEEeCCCCce
Q 040370           20 HNVRSVSFHPSGDFLLAGTDHPIAHLYDVNTFQCYLSANVPEISVNGAINQVRYSSTGGMYVTASKDGAIRLWDGVSANC   99 (228)
Q Consensus        20 ~~v~~~~~~~~~~~l~~~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~   99 (228)
                      ..|..++|+.+  .|++.. ++.+..++...-.........    ..++..+.++|.  .++....+|.+.++++.+++.
T Consensus        87 p~v~~vafs~d--~l~v~~-~~~l~~~~~~~l~~~~~~~~~----~~~~~~~~~~p~--~~~l~~~~~~~~~~~l~~~~~  157 (381)
T d1xipa_          87 PDVIFVCFHGD--QVLVST-RNALYSLDLEELSEFRTVTSF----EKPVFQLKNVNN--TLVILNSVNDLSALDLRTKST  157 (381)
T ss_dssp             TTEEEEEEETT--EEEEEE-SSEEEEEESSSTTCEEEEEEC----SSCEEEEEECSS--EEEEEETTSEEEEEETTTCCE
T ss_pred             CCeEEEEeeCC--EEEEEe-CCCEEEEEeeccccccccccc----cccccceecCCc--eeEEEecCCCEEEEEeccCcc
Confidence            36888999744  455554 456777776653322222111    456778888775  467777889999999988764


Q ss_pred             eeEEecc---cccceeEEEEECCCCCEEEEee
Q 040370          100 VRSIVGA---HGTAEATSANFTKDQRFVLSCG  128 (228)
Q Consensus       100 ~~~~~~~---~~~~~i~~~~~~~~~~~l~~~~  128 (228)
                      .......   .-...+.+++|++.+..++++.
T Consensus       158 ~~~~~~v~~~~~~~~~~~v~ws~kgkq~v~~~  189 (381)
T d1xipa_         158 KQLAQNVTSFDVTNSQLAVLLKDRSFQSFAWR  189 (381)
T ss_dssp             EEEEESEEEEEECSSEEEEEETTSCEEEEEEE
T ss_pred             ccccCCcceEEecCCceEEEEeCCcEEEEEeC
Confidence            3322110   0124466677777776666653