Citrus Sinensis ID: 040385
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 827 | 2.2.26 [Sep-21-2011] | |||||||
| O22207 | 924 | Ubiquitin carboxyl-termin | yes | no | 0.985 | 0.882 | 0.646 | 0.0 | |
| Q93Y01 | 910 | Ubiquitin carboxyl-termin | no | no | 0.954 | 0.867 | 0.445 | 0.0 | |
| Q9ZSB5 | 923 | Ubiquitin carboxyl-termin | no | no | 0.952 | 0.853 | 0.445 | 0.0 | |
| Q9MAQ3 | 892 | Putative ubiquitin carbox | no | no | 0.939 | 0.871 | 0.426 | 0.0 | |
| Q9C585 | 871 | Ubiquitin carboxyl-termin | no | no | 0.949 | 0.901 | 0.396 | 1e-168 | |
| B2GUZ1 | 961 | Ubiquitin carboxyl-termin | yes | no | 0.935 | 0.805 | 0.327 | 1e-117 | |
| P35123 | 962 | Ubiquitin carboxyl-termin | yes | no | 0.955 | 0.821 | 0.327 | 1e-113 | |
| F6Z5C0 | 982 | Ubiquitin carboxyl-termin | yes | no | 0.946 | 0.797 | 0.335 | 1e-113 | |
| Q8R5H1 | 981 | Ubiquitin carboxyl-termin | no | no | 0.941 | 0.794 | 0.332 | 1e-112 | |
| Q9Y4E8 | 981 | Ubiquitin carboxyl-termin | yes | no | 0.944 | 0.796 | 0.330 | 1e-112 |
| >sp|O22207|UBP5_ARATH Ubiquitin carboxyl-terminal hydrolase 5 OS=Arabidopsis thaliana GN=UBP5 PE=1 SV=2 | Back alignment and function desciption |
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Score = 1127 bits (2916), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 569/880 (64%), Positives = 665/880 (75%), Gaps = 65/880 (7%)
Query: 1 WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
WWQ WI+YVNQDQP NT DGSSL EH +S GSS K+PS IDNSDL+ D++ EDP E
Sbjct: 48 WWQEWIEYVNQDQPCNTNDGSSLSEHCDSPGSSTLKKPSRIDNSDLIYDSSLEDPSNTSE 107
Query: 61 IVDTLLEGRDYILLPQEVWNQLHSWYGGGPTLARKVISSGLSQTELAVEVYPLRLQLLVM 120
I++TL EGRDY+LLPQEVWNQL SWYGGGPTLAR+VISSGLSQTELAVEVYPLRLQLL+M
Sbjct: 108 IIETLQEGRDYVLLPQEVWNQLRSWYGGGPTLARRVISSGLSQTELAVEVYPLRLQLLLM 167
Query: 121 PRGECSTIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLDDANI 180
P+ + S IRISKKETI ELHRRAC IF L+ E + IWDYYGH+K++LMND+D+TLDDAN+
Sbjct: 168 PKSDHSAIRISKKETIRELHRRACEIFDLDSEHVRIWDYYGHQKYSLMNDLDKTLDDANL 227
Query: 181 QMDQDILVEVLDNVNGTNCKSSIQ---DNGFAEKKASSVLVEPSKSSLSIAGGWSASKGT 237
QMDQDILVEVLD +NGT + IQ +NG + ++S+L+EPSKSSL+ AGG+S+S+
Sbjct: 228 QMDQDILVEVLD-INGTLSSAHIQSAQENGLVDGDSTSILIEPSKSSLAAAGGFSSSRNA 286
Query: 238 SRNHSSEISTSPNLASARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCLVHT 297
R S E+S S DNT S+GVTTRG++ GLTGLLNLGNTCFMNSAIQCLVHT
Sbjct: 287 FRTGSVEVSQS--------FDNTYSSTGVTTRGSTAGLTGLLNLGNTCFMNSAIQCLVHT 338
Query: 298 PEFARYFREDYRREINWQNPLGMV------------------------------------ 321
PEFA YF+EDY +EINWQNPLGMV
Sbjct: 339 PEFASYFQEDYHQEINWQNPLGMVGELALAFGDLLRKLWAPGRTPIAPRPFKAKLARFAP 398
Query: 322 -----------ELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHIARND 370
ELLAFLLDGLHEDLNRVKHKPYI S+DADGRPDEEVADE+W NHIARND
Sbjct: 399 QFSGYNQHDSQELLAFLLDGLHEDLNRVKHKPYINSRDADGRPDEEVADEFWKNHIARND 458
Query: 371 SIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPST 430
SIIVDVCQGQYKSTLVCP+CNKVSVTFDPFMYLSLPLQ TTR +TVTVF+ D +ALPST
Sbjct: 459 SIIVDVCQGQYKSTLVCPICNKVSVTFDPFMYLSLPLQFNTTRAITVTVFSCDKTALPST 518
Query: 431 YTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRFLDDPLISLSTIKDDDHL 490
TV V K GRCRDLIQ L N CSLKQSEELK+AEI+N+ I R +DPLI LS+IKDDDHL
Sbjct: 519 ITVNVSKQGRCRDLIQALTNACSLKQSEELKLAEIRNNFIHRLFEDPLIPLSSIKDDDHL 578
Query: 491 AAYRVPKLVKKAVFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSISRDDVISSGKIQST 550
AAY++ K + L+L+ R ++Q+ G ++T Q K GTPL+SS S D ++ GKI
Sbjct: 579 AAYKLSKSSENTTLLRLVLRRRDQKAGERESTVQLKPCGTPLLSSASCGDALTKGKIHCL 638
Query: 551 VQRMLSPFLKKESL---MHADSFDPSSMVTTVDPSGEAHSNSSSNIAKEDASSSKAVTLP 607
VQ MLSPF ++ES+ ++DS P + + E + + K S+S +
Sbjct: 639 VQNMLSPFRREESVGKKGNSDSSIPERRSARFNNTEE--EDKVGGLKKAKKSNSSDLGAS 696
Query: 608 NLPLQLVDESNVCFDLSVEGDKTIRIPSSSTSIVVYVDWSQKLLEKYNTHFLENLLEVFK 667
L LQL+DE N +L + +++PSS+T + +Y+DW+ +L Y+ LE+L EV K
Sbjct: 697 KLSLQLIDEDNKTINLPDNEAEAMKLPSSAT-VTIYLDWTPELSGMYDITCLESLPEVLK 755
Query: 668 NGPVTKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVI 727
GP TKKAR+EPLSLY CLEAFLREEPLVP++MW+CPQC ERRQASKKLDLWRLPEVLVI
Sbjct: 756 YGPTTKKARSEPLSLYACLEAFLREEPLVPDEMWFCPQCNERRQASKKLDLWRLPEVLVI 815
Query: 728 HLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHY 787
HLKRFSYSRSMKHKLETFVNFPIHD +LTKYVANKN S+ QLYELYALTNHYGGMGSGHY
Sbjct: 816 HLKRFSYSRSMKHKLETFVNFPIHDLDLTKYVANKNLSQPQLYELYALTNHYGGMGSGHY 875
Query: 788 TAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
TAHIKLLD++RWYNFDDSHIS INEDDVKS AAYVLFYRR
Sbjct: 876 TAHIKLLDDSRWYNFDDSHISHINEDDVKSGAAYVLFYRR 915
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Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. Involved in the processing of poly-ubiquitin precursors as well as that of ubiquitinated proteins. Arabidopsis thaliana (taxid: 3702) EC: 3EC: .EC: 4EC: .EC: 1EC: 9EC: .EC: 1EC: 2 |
| >sp|Q93Y01|UBP9_ARATH Ubiquitin carboxyl-terminal hydrolase 9 OS=Arabidopsis thaliana GN=UBP9 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q9ZSB5|UBP10_ARATH Ubiquitin carboxyl-terminal hydrolase 10 OS=Arabidopsis thaliana GN=UBP10 PE=2 SV=2 | Back alignment and function description |
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| >sp|Q9MAQ3|UBP11_ARATH Putative ubiquitin carboxyl-terminal hydrolase 11 OS=Arabidopsis thaliana GN=UBP11 PE=3 SV=2 | Back alignment and function description |
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| >sp|Q9C585|UBP8_ARATH Ubiquitin carboxyl-terminal hydrolase 8 OS=Arabidopsis thaliana GN=UBP8 PE=1 SV=2 | Back alignment and function description |
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| >sp|B2GUZ1|UBP4_RAT Ubiquitin carboxyl-terminal hydrolase 4 OS=Rattus norvegicus GN=Usp4 PE=1 SV=1 | Back alignment and function description |
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| >sp|P35123|UBP4_MOUSE Ubiquitin carboxyl-terminal hydrolase 4 OS=Mus musculus GN=Usp4 PE=1 SV=3 | Back alignment and function description |
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| >sp|F6Z5C0|UBP15_XENTR Ubiquitin carboxyl-terminal hydrolase 15 OS=Xenopus tropicalis GN=usp15 PE=2 SV=2 | Back alignment and function description |
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| >sp|Q8R5H1|UBP15_MOUSE Ubiquitin carboxyl-terminal hydrolase 15 OS=Mus musculus GN=Usp15 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q9Y4E8|UBP15_HUMAN Ubiquitin carboxyl-terminal hydrolase 15 OS=Homo sapiens GN=USP15 PE=1 SV=3 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 827 | ||||||
| 224089911 | 951 | predicted protein [Populus trichocarpa] | 0.993 | 0.864 | 0.719 | 0.0 | |
| 296088825 | 955 | unnamed protein product [Vitis vinifera] | 0.998 | 0.864 | 0.723 | 0.0 | |
| 359495412 | 1056 | PREDICTED: ubiquitin carboxyl-terminal h | 0.998 | 0.782 | 0.723 | 0.0 | |
| 255578843 | 942 | Ubiquitin carboxyl-terminal hydrolase, p | 0.989 | 0.868 | 0.696 | 0.0 | |
| 449459070 | 940 | PREDICTED: ubiquitin carboxyl-terminal h | 0.986 | 0.868 | 0.686 | 0.0 | |
| 356571884 | 938 | PREDICTED: ubiquitin carboxyl-terminal h | 0.991 | 0.874 | 0.683 | 0.0 | |
| 356503356 | 938 | PREDICTED: ubiquitin carboxyl-terminal h | 0.995 | 0.877 | 0.683 | 0.0 | |
| 357509209 | 912 | Ubiquitin carboxyl-terminal hydrolase [M | 0.974 | 0.883 | 0.676 | 0.0 | |
| 297827733 | 924 | ubiquitin-specific protease 5 [Arabidops | 0.985 | 0.882 | 0.65 | 0.0 | |
| 18405549 | 924 | ubiquitin carboxyl-terminal hydrolase 5 | 0.985 | 0.882 | 0.646 | 0.0 |
| >gi|224089911|ref|XP_002308863.1| predicted protein [Populus trichocarpa] gi|222854839|gb|EEE92386.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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Score = 1288 bits (3333), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 635/883 (71%), Positives = 711/883 (80%), Gaps = 61/883 (6%)
Query: 1 WWQHWIDYVNQDQPNNTGDGSSLLEHFNSAGSSASKRPSGIDNSDLVNDATAEDPGAGPE 60
WWQHWIDYVNQ+Q N T DGSS+LE N S+S+RP+ IDNSDL++DA +E+ G E
Sbjct: 50 WWQHWIDYVNQEQTNVTNDGSSMLE--NCDAVSSSRRPASIDNSDLIHDANSEESNVGFE 107
Query: 61 IVDTLLEGRDYILLPQEVWNQLHSWYGGGPTLARKVISSGLSQTELAVEVYPLRLQLLVM 120
I DTLLEGRDYILLPQEVWNQL+SWYGGGP LARKVISSGLSQTE AVEVYPLRL+L VM
Sbjct: 108 IHDTLLEGRDYILLPQEVWNQLYSWYGGGPALARKVISSGLSQTEYAVEVYPLRLRLFVM 167
Query: 121 PRGECSTIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLDDANI 180
P+G+ STIRISKKETIGELH+RAC +F LNLEQ+CIWDYYG RKHALMNDMDRTLDDAN+
Sbjct: 168 PKGDQSTIRISKKETIGELHKRACELFDLNLEQVCIWDYYGQRKHALMNDMDRTLDDANL 227
Query: 181 QMDQDILVEVLDNVNGTNCKS---SIQDNGFAEKKASSVLVEPSKSSLSIAGGWSASKGT 237
QMDQDILVEV +N NGT S Q NG K+ASS L+EPSKSSLSIAGG SAS+G
Sbjct: 228 QMDQDILVEVHNNANGTALSRFIRSAQGNGSTVKEASSFLLEPSKSSLSIAGGLSASRGA 287
Query: 238 SRNHSSEISTSPNLAS-ARDSDNTLGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCLVH 296
SR S+E+S S NL S R+ DNT G S VTTRG+S GL GL NLGNTCFMNSAIQCLVH
Sbjct: 288 SRGGSTELSQSLNLTSQGRELDNTYGISTVTTRGSSGGLIGLQNLGNTCFMNSAIQCLVH 347
Query: 297 TPEFARYFREDYRREINWQNPLGMV----------------------------------- 321
T EFA+YFREDY +EINWQNPLGMV
Sbjct: 348 TSEFAKYFREDYHQEINWQNPLGMVGELALAFGELLRRLWAPGRTAIAPRQFKMKLARFA 407
Query: 322 ------------ELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHIARN 369
ELLAFLLDGLHEDLNRVKHKPY KSKDADGRPDEEVADEYWANHIARN
Sbjct: 408 PQFSGYNQHDSQELLAFLLDGLHEDLNRVKHKPYKKSKDADGRPDEEVADEYWANHIARN 467
Query: 370 DSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPS 429
DSIIVDVCQGQYKSTLVCP C+K+SVTFDPFMYLSLPLQ+TTTR+MTVT+FT DGSALP
Sbjct: 468 DSIIVDVCQGQYKSTLVCPECHKISVTFDPFMYLSLPLQSTTTRSMTVTIFTCDGSALPF 527
Query: 430 TYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRFLDDPLISLSTIKDDDH 489
+ TVTVPK GRCRDLI L + CSLK +E+LK+AE++NH QRFL+DPLISLS IKDDDH
Sbjct: 528 SCTVTVPKQGRCRDLINALSSACSLKNNEDLKLAEVRNHLFQRFLEDPLISLSMIKDDDH 587
Query: 490 LAAYRVPKLVKKAVFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSISRDDVISSGKIQS 549
L AY++PK +KK + ++LIHR QEQE GA Q WK +GTPLVS ISRD+VI+ G IQ+
Sbjct: 588 LVAYKIPKSLKKTLLIRLIHRRQEQEMGATQAAQHWKPFGTPLVSLISRDEVITRGDIQT 647
Query: 550 TVQRMLSPFLKKESLMHADSFDP-----SSMVTTVDPSGEAHSNSSSNIAKEDASSSKAV 604
V MLSP L+ ESL AD+ +P +S SGEA SNS S+ +D + AV
Sbjct: 648 VVNTMLSPLLRSESLRQADTSEPFLSLAASEKRRDSSSGEACSNSMSDSVNKDGN---AV 704
Query: 605 TLPNLPLQLVDESNVCFDLSVEGDKTIRIPSSSTSIVVYVDWSQKLLEKYNTHFLENLLE 664
TL LPLQLV+ESN C DLSV DK I++ S+STS++VYVDWS++LLEKY+TH+LENL E
Sbjct: 705 TLFKLPLQLVEESNACVDLSVGEDKAIKLSSTSTSVLVYVDWSRELLEKYDTHYLENLPE 764
Query: 665 VFKNGPVTKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEV 724
VFK GPV KKARTEPLSLYTCLEAFLREEPLVPEDMWYCP+CKERRQASKKLDLWRLPEV
Sbjct: 765 VFKYGPVNKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPKCKERRQASKKLDLWRLPEV 824
Query: 725 LVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGS 784
LVIHLKRFS+SRSMKHKLETFVNFPIHDF+LTKY+ANKN+++RQLYELYALTNHYGGMGS
Sbjct: 825 LVIHLKRFSFSRSMKHKLETFVNFPIHDFDLTKYIANKNNTQRQLYELYALTNHYGGMGS 884
Query: 785 GHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
GHYTAHIKLLDENRWYNFDD+HISPINE+DVKSAAAYVLFYRR
Sbjct: 885 GHYTAHIKLLDENRWYNFDDTHISPINEEDVKSAAAYVLFYRR 927
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Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296088825|emb|CBI38283.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|359495412|ref|XP_003634986.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 5-like [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|255578843|ref|XP_002530276.1| Ubiquitin carboxyl-terminal hydrolase, putative [Ricinus communis] gi|223530208|gb|EEF32116.1| Ubiquitin carboxyl-terminal hydrolase, putative [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|449459070|ref|XP_004147269.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 5-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|356571884|ref|XP_003554101.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 5-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|356503356|ref|XP_003520476.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 5-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|357509209|ref|XP_003624893.1| Ubiquitin carboxyl-terminal hydrolase [Medicago truncatula] gi|355499908|gb|AES81111.1| Ubiquitin carboxyl-terminal hydrolase [Medicago truncatula] | Back alignment and taxonomy information |
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| >gi|297827733|ref|XP_002881749.1| ubiquitin-specific protease 5 [Arabidopsis lyrata subsp. lyrata] gi|297327588|gb|EFH58008.1| ubiquitin-specific protease 5 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
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| >gi|18405549|ref|NP_565944.1| ubiquitin carboxyl-terminal hydrolase 5 [Arabidopsis thaliana] gi|62901125|sp|O22207.2|UBP5_ARATH RecName: Full=Ubiquitin carboxyl-terminal hydrolase 5; AltName: Full=Deubiquitinating enzyme 5; Short=AtUBP5; AltName: Full=Ubiquitin thioesterase 5; AltName: Full=Ubiquitin-specific-processing protease 5 gi|6648604|gb|AAF21246.1|AF048705_1 ubiquitin-specific protease [Arabidopsis thaliana] gi|20196935|gb|AAB86453.2| ubiquitin-specific protease 5 (UBP5), putative [Arabidopsis thaliana] gi|20466470|gb|AAM20552.1| putative ubiquitin carboxyl terminal hydrolase [Arabidopsis thaliana] gi|23198184|gb|AAN15619.1| putative ubiquitin carboxyl terminal hydrolase [Arabidopsis thaliana] gi|330254806|gb|AEC09900.1| ubiquitin carboxyl-terminal hydrolase 5 [Arabidopsis thaliana] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 827 | ||||||
| TAIR|locus:2058490 | 924 | UBP5 "ubiquitin-specific prote | 0.638 | 0.571 | 0.629 | 4.9e-289 | |
| TAIR|locus:2139222 | 910 | UBP10 "AT4G10590" [Arabidopsis | 0.597 | 0.542 | 0.494 | 6.2e-181 | |
| TAIR|locus:2139202 | 923 | UBP9 "AT4G10570" [Arabidopsis | 0.596 | 0.534 | 0.499 | 1.6e-180 | |
| TAIR|locus:505006627 | 871 | UBP8 "ubiquitin-specific prote | 0.597 | 0.567 | 0.477 | 1.8e-152 | |
| TAIR|locus:2037985 | 892 | UBP11 "AT1G32850" [Arabidopsis | 0.343 | 0.318 | 0.458 | 8.1e-108 | |
| MGI|MGI:101857 | 981 | Usp15 "ubiquitin specific pept | 0.243 | 0.204 | 0.479 | 1.2e-107 | |
| UNIPROTKB|Q9Y4E8 | 981 | USP15 "Ubiquitin carboxyl-term | 0.233 | 0.196 | 0.490 | 2.7e-107 | |
| RGD|628795 | 952 | Usp15 "ubiquitin specific pept | 0.233 | 0.202 | 0.490 | 4.6e-107 | |
| UNIPROTKB|Q2HJE4 | 952 | USP15 "Ubiquitin carboxyl-term | 0.233 | 0.202 | 0.490 | 1e-106 | |
| UNIPROTKB|E9PCQ3 | 956 | USP15 "Ubiquitin carboxyl-term | 0.233 | 0.201 | 0.490 | 1.4e-106 |
| TAIR|locus:2058490 UBP5 "ubiquitin-specific protease 5" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1693 (601.0 bits), Expect = 4.9e-289, Sum P(2) = 4.9e-289
Identities = 338/537 (62%), Positives = 393/537 (73%)
Query: 297 TPEFARYFREDYRR---EINWQNPLGMVELLAFLLDGLHEDLNRVKHKPYIKSKDADGRP 353
TP R F+ R + + N ELLAFLLDGLHEDLNRVKHKPYI S+DADGRP
Sbjct: 382 TPIAPRPFKAKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKHKPYINSRDADGRP 441
Query: 354 DEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQAXXXX 413
DEEVADE+W NHIARNDSIIVDVCQGQYKSTLVCP+CNKVSVTFDPFMYLSLPLQ
Sbjct: 442 DEEVADEFWKNHIARNDSIIVDVCQGQYKSTLVCPICNKVSVTFDPFMYLSLPLQFNTTR 501
Query: 414 XXXXXXXXSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKVAEIQNHSIQRF 473
D +ALPST TV V K GRCRDLIQ L N CSLKQSEELK+AEI+N+ I R
Sbjct: 502 AITVTVFSCDKTALPSTITVNVSKQGRCRDLIQALTNACSLKQSEELKLAEIRNNFIHRL 561
Query: 474 LDDPLISLSTIKDDDHLAAYRVPKLVKKAVFLQLIHRLQEQEPGAAQTTSQWKAYGTPLX 533
+DPLI LS+IKDDDHLAAY++ K + L+L+ R ++Q+ G ++T Q K GTPL
Sbjct: 562 FEDPLIPLSSIKDDDHLAAYKLSKSSENTTLLRLVLRRRDQKAGERESTVQLKPCGTPLL 621
Query: 534 XXXXXXXXXXXGKIQSTVQRMLSPFLKKESLM---HADSFDPSSMVTTVDPSGEAHSNSS 590
GKI VQ MLSPF ++ES+ ++DS P + + E +
Sbjct: 622 SSASCGDALTKGKIHCLVQNMLSPFRREESVGKKGNSDSSIPERRSARFNNTEE--EDKV 679
Query: 591 SNIAKEDASSSKAVTLPNLPLQLVDESNVCFDLSVEGDKTIRIPSSSTSIVVYVDWSQKL 650
+ K S+S + L LQL+DE N +L + +++PSS+T + +Y+DW+ +L
Sbjct: 680 GGLKKAKKSNSSDLGASKLSLQLIDEDNKTINLPDNEAEAMKLPSSAT-VTIYLDWTPEL 738
Query: 651 LEKYNTHFLENLLEVFKNGPVTKKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERR 710
Y+ LE+L EV K GP TKKAR+EPLSLY CLEAFLREEPLVP++MW+CPQC ERR
Sbjct: 739 SGMYDITCLESLPEVLKYGPTTKKARSEPLSLYACLEAFLREEPLVPDEMWFCPQCNERR 798
Query: 711 QASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLY 770
QASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHD +LTKYVANKN S+ QLY
Sbjct: 799 QASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDLDLTKYVANKNLSQPQLY 858
Query: 771 ELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
ELYALTNHYGGMGSGHYTAHIKLLD++RWYNFDDSHIS INEDDVKS AAYVLFYRR
Sbjct: 859 ELYALTNHYGGMGSGHYTAHIKLLDDSRWYNFDDSHISHINEDDVKSGAAYVLFYRR 915
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| TAIR|locus:2139222 UBP10 "AT4G10590" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2139202 UBP9 "AT4G10570" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:505006627 UBP8 "ubiquitin-specific protease 8" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2037985 UBP11 "AT1G32850" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| MGI|MGI:101857 Usp15 "ubiquitin specific peptidase 15" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q9Y4E8 USP15 "Ubiquitin carboxyl-terminal hydrolase 15" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
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| RGD|628795 Usp15 "ubiquitin specific peptidase 15" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q2HJE4 USP15 "Ubiquitin carboxyl-terminal hydrolase 15" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|E9PCQ3 USP15 "Ubiquitin carboxyl-terminal hydrolase" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| P35123 | UBP4_MOUSE | 3, ., 4, ., 1, 9, ., 1, 2 | 0.3278 | 0.9552 | 0.8212 | yes | no |
| O22207 | UBP5_ARATH | 3, ., 4, ., 1, 9, ., 1, 2 | 0.6465 | 0.9854 | 0.8820 | yes | no |
| B2GUZ1 | UBP4_RAT | 3, ., 4, ., 1, 9, ., 1, 2 | 0.3279 | 0.9359 | 0.8054 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 3.4.19 | 0.976 |
| 3rd Layer | 3.4.19.12 | 0.991 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 827 | |||
| cd02674 | 230 | cd02674, Peptidase_C19R, A subfamily of peptidase | 8e-57 | |
| COG5560 | 823 | COG5560, UBP12, Ubiquitin C-terminal hydrolase [Po | 5e-51 | |
| COG5560 | 823 | COG5560, UBP12, Ubiquitin C-terminal hydrolase [Po | 6e-50 | |
| pfam00443 | 313 | pfam00443, UCH, Ubiquitin carboxyl-terminal hydrol | 7e-43 | |
| cd02257 | 255 | cd02257, Peptidase_C19, Peptidase C19 contains ubi | 3e-38 | |
| cd02661 | 304 | cd02661, Peptidase_C19E, A subfamily of Peptidase | 1e-34 | |
| cd02660 | 328 | cd02660, Peptidase_C19D, A subfamily of Peptidase | 1e-32 | |
| pfam00443 | 313 | pfam00443, UCH, Ubiquitin carboxyl-terminal hydrol | 1e-28 | |
| cd02659 | 334 | cd02659, peptidase_C19C, A subfamily of Peptidase | 1e-25 | |
| cd02667 | 279 | cd02667, Peptidase_C19K, A subfamily of Peptidase | 3e-24 | |
| cd02668 | 324 | cd02668, Peptidase_C19L, A subfamily of Peptidase | 8e-24 | |
| cd02674 | 230 | cd02674, Peptidase_C19R, A subfamily of peptidase | 3e-23 | |
| cd02663 | 300 | cd02663, Peptidase_C19G, A subfamily of Peptidase | 2e-22 | |
| COG5533 | 415 | COG5533, UBP5, Ubiquitin C-terminal hydrolase [Pos | 1e-21 | |
| COG5533 | 415 | COG5533, UBP5, Ubiquitin C-terminal hydrolase [Pos | 4e-20 | |
| cd02257 | 255 | cd02257, Peptidase_C19, Peptidase C19 contains ubi | 2e-19 | |
| pfam06337 | 86 | pfam06337, DUSP, DUSP domain | 3e-17 | |
| smart00695 | 88 | smart00695, DUSP, Domain in ubiquitin-specific pro | 4e-17 | |
| cd02661 | 304 | cd02661, Peptidase_C19E, A subfamily of Peptidase | 4e-16 | |
| cd02660 | 328 | cd02660, Peptidase_C19D, A subfamily of Peptidase | 1e-15 | |
| cd02671 | 332 | cd02671, Peptidase_C19O, A subfamily of Peptidase | 6e-14 | |
| cd02657 | 305 | cd02657, Peptidase_C19A, A subfamily of Peptidase | 1e-13 | |
| cd02664 | 327 | cd02664, Peptidase_C19H, A subfamily of Peptidase | 1e-12 | |
| cd02658 | 311 | cd02658, Peptidase_C19B, A subfamily of Peptidase | 7e-12 | |
| cd02662 | 240 | cd02662, Peptidase_C19F, A subfamily of Peptidase | 5e-10 | |
| COG5077 | 1089 | COG5077, COG5077, Ubiquitin carboxyl-terminal hydr | 6e-09 | |
| cd02667 | 279 | cd02667, Peptidase_C19K, A subfamily of Peptidase | 1e-08 | |
| pfam13423 | 296 | pfam13423, UCH_1, Ubiquitin carboxyl-terminal hydr | 2e-08 | |
| cd02669 | 440 | cd02669, Peptidase_C19M, A subfamily of Peptidase | 2e-08 | |
| cd02664 | 327 | cd02664, Peptidase_C19H, A subfamily of Peptidase | 9e-08 | |
| cd02658 | 311 | cd02658, Peptidase_C19B, A subfamily of Peptidase | 1e-07 | |
| cd02657 | 305 | cd02657, Peptidase_C19A, A subfamily of Peptidase | 6e-06 | |
| cd02673 | 245 | cd02673, Peptidase_C19Q, A subfamily of Peptidase | 9e-06 | |
| cd02659 | 334 | cd02659, peptidase_C19C, A subfamily of Peptidase | 1e-05 | |
| cd02668 | 324 | cd02668, Peptidase_C19L, A subfamily of Peptidase | 3e-05 | |
| cd02662 | 240 | cd02662, Peptidase_C19F, A subfamily of Peptidase | 2e-04 | |
| cd02665 | 228 | cd02665, Peptidase_C19I, A subfamily of Peptidase | 5e-04 | |
| COG5207 | 749 | COG5207, UBP14, Isopeptidase T [Posttranslational | 0.002 |
| >gnl|CDD|239139 cd02674, Peptidase_C19R, A subfamily of peptidase C19 | Back alignment and domain information |
|---|
Score = 194 bits (495), Expect = 8e-57
Identities = 71/154 (46%), Positives = 103/154 (66%)
Query: 673 KKARTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRF 732
++L CL F +EE L ++ W CP+CK++R+A+KKL + RLP+VL+IHLKRF
Sbjct: 77 GSGDAPKVTLEDCLRLFTKEETLDGDNAWKCPKCKKKRKATKKLTISRLPKVLIIHLKRF 136
Query: 733 SYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIK 792
S+SR KL T V FP++D +LT YV ++ + Y+LYA+ NHYG + GHYTA+ K
Sbjct: 137 SFSRGSTRKLTTPVTFPLNDLDLTPYVDTRSFTGPFKYDLYAVVNHYGSLNGGHYTAYCK 196
Query: 793 LLDENRWYNFDDSHISPINEDDVKSAAAYVLFYR 826
+ N WY FDDS ++ ++E V S++AY+LFY
Sbjct: 197 NNETNDWYKFDDSRVTKVSESSVVSSSAYILFYE 230
|
Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 230 |
| >gnl|CDD|227847 COG5560, UBP12, Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >gnl|CDD|227847 COG5560, UBP12, Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >gnl|CDD|215922 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase | Back alignment and domain information |
|---|
| >gnl|CDD|239072 cd02257, Peptidase_C19, Peptidase C19 contains ubiquitinyl hydrolases | Back alignment and domain information |
|---|
| >gnl|CDD|239126 cd02661, Peptidase_C19E, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239125 cd02660, Peptidase_C19D, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|215922 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase | Back alignment and domain information |
|---|
| >gnl|CDD|239124 cd02659, peptidase_C19C, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239132 cd02667, Peptidase_C19K, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239133 cd02668, Peptidase_C19L, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239139 cd02674, Peptidase_C19R, A subfamily of peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239128 cd02663, Peptidase_C19G, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|227820 COG5533, UBP5, Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >gnl|CDD|227820 COG5533, UBP5, Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >gnl|CDD|239072 cd02257, Peptidase_C19, Peptidase C19 contains ubiquitinyl hydrolases | Back alignment and domain information |
|---|
| >gnl|CDD|218995 pfam06337, DUSP, DUSP domain | Back alignment and domain information |
|---|
| >gnl|CDD|197831 smart00695, DUSP, Domain in ubiquitin-specific proteases | Back alignment and domain information |
|---|
| >gnl|CDD|239126 cd02661, Peptidase_C19E, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239125 cd02660, Peptidase_C19D, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239136 cd02671, Peptidase_C19O, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239122 cd02657, Peptidase_C19A, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239129 cd02664, Peptidase_C19H, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239123 cd02658, Peptidase_C19B, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239127 cd02662, Peptidase_C19F, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|227409 COG5077, COG5077, Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >gnl|CDD|239132 cd02667, Peptidase_C19K, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|222118 pfam13423, UCH_1, Ubiquitin carboxyl-terminal hydrolase | Back alignment and domain information |
|---|
| >gnl|CDD|239134 cd02669, Peptidase_C19M, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239129 cd02664, Peptidase_C19H, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239123 cd02658, Peptidase_C19B, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239122 cd02657, Peptidase_C19A, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239138 cd02673, Peptidase_C19Q, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239124 cd02659, peptidase_C19C, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239133 cd02668, Peptidase_C19L, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239127 cd02662, Peptidase_C19F, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239130 cd02665, Peptidase_C19I, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|227532 COG5207, UBP14, Isopeptidase T [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 827 | |||
| COG5560 | 823 | UBP12 Ubiquitin C-terminal hydrolase [Posttranslat | 100.0 | |
| KOG1870 | 842 | consensus Ubiquitin C-terminal hydrolase [Posttran | 100.0 | |
| KOG1865 | 545 | consensus Ubiquitin carboxyl-terminal hydrolase [P | 100.0 | |
| COG5533 | 415 | UBP5 Ubiquitin C-terminal hydrolase [Posttranslati | 100.0 | |
| cd02667 | 279 | Peptidase_C19K A subfamily of Peptidase C19. Pepti | 100.0 | |
| cd02663 | 300 | Peptidase_C19G A subfamily of Peptidase C19. Pepti | 100.0 | |
| cd02671 | 332 | Peptidase_C19O A subfamily of Peptidase C19. Pepti | 100.0 | |
| cd02664 | 327 | Peptidase_C19H A subfamily of Peptidase C19. Pepti | 100.0 | |
| cd02668 | 324 | Peptidase_C19L A subfamily of Peptidase C19. Pepti | 100.0 | |
| cd02660 | 328 | Peptidase_C19D A subfamily of Peptidase C19. Pepti | 100.0 | |
| KOG1868 | 653 | consensus Ubiquitin C-terminal hydrolase [Posttran | 100.0 | |
| cd02669 | 440 | Peptidase_C19M A subfamily of Peptidase C19. Pepti | 100.0 | |
| cd02659 | 334 | peptidase_C19C A subfamily of Peptidase C19. Pepti | 100.0 | |
| cd02662 | 240 | Peptidase_C19F A subfamily of Peptidase C19. Pepti | 100.0 | |
| cd02657 | 305 | Peptidase_C19A A subfamily of Peptidase C19. Pepti | 100.0 | |
| cd02661 | 304 | Peptidase_C19E A subfamily of Peptidase C19. Pepti | 100.0 | |
| cd02658 | 311 | Peptidase_C19B A subfamily of Peptidase C19. Pepti | 100.0 | |
| cd02674 | 230 | Peptidase_C19R A subfamily of peptidase C19. Pepti | 100.0 | |
| cd02665 | 228 | Peptidase_C19I A subfamily of Peptidase C19. Pepti | 100.0 | |
| cd02673 | 245 | Peptidase_C19Q A subfamily of Peptidase C19. Pepti | 100.0 | |
| KOG1873 | 877 | consensus Ubiquitin-specific protease [Posttransla | 100.0 | |
| cd02672 | 268 | Peptidase_C19P A subfamily of Peptidase C19. Pepti | 100.0 | |
| KOG1867 | 492 | consensus Ubiquitin-specific protease [Posttransla | 100.0 | |
| cd02257 | 255 | Peptidase_C19 Peptidase C19 contains ubiquitinyl h | 100.0 | |
| KOG0944 | 763 | consensus Ubiquitin-specific protease UBP14 [Postt | 100.0 | |
| cd02666 | 343 | Peptidase_C19J A subfamily of Peptidase C19. Pepti | 100.0 | |
| KOG1866 | 944 | consensus Ubiquitin carboxyl-terminal hydrolase [P | 100.0 | |
| COG5077 | 1089 | Ubiquitin carboxyl-terminal hydrolase [Posttransla | 100.0 | |
| PF00443 | 269 | UCH: Ubiquitin carboxyl-terminal hydrolase; InterP | 100.0 | |
| KOG4598 | 1203 | consensus Putative ubiquitin-specific protease [Po | 100.0 | |
| cd02670 | 241 | Peptidase_C19N A subfamily of Peptidase C19. Pepti | 99.97 | |
| COG5207 | 749 | UBP14 Isopeptidase T [Posttranslational modificati | 99.97 | |
| KOG1864 | 587 | consensus Ubiquitin-specific protease [Posttransla | 99.97 | |
| KOG1863 | 1093 | consensus Ubiquitin carboxyl-terminal hydrolase [P | 99.96 | |
| PF13423 | 295 | UCH_1: Ubiquitin carboxyl-terminal hydrolase | 99.91 | |
| KOG1871 | 420 | consensus Ubiquitin-specific protease [Posttransla | 99.91 | |
| KOG1872 | 473 | consensus Ubiquitin-specific protease [Posttransla | 99.86 | |
| KOG2026 | 442 | consensus Spindle pole body protein - Sad1p [Cytos | 99.84 | |
| PF06337 | 99 | DUSP: DUSP domain; InterPro: IPR006615 Deubiquitin | 99.71 | |
| smart00695 | 86 | DUSP Domain in ubiquitin-specific proteases. | 99.61 | |
| PF14836 | 88 | Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A | 99.4 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 98.77 | |
| PF14533 | 213 | USP7_C2: Ubiquitin-specific protease C-terminal; P | 98.06 | |
| PF15499 | 275 | Peptidase_C98: Ubiquitin-specific peptidase-like, | 96.57 | |
| PF14560 | 87 | Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2K | 95.67 | |
| cd01796 | 71 | DDI1_N DNA damage inducible protein 1 ubiquitin-li | 94.97 | |
| PTZ00044 | 76 | ubiquitin; Provisional | 93.6 | |
| cd01807 | 74 | GDX_N ubiquitin-like domain of GDX. GDX contains a | 93.34 | |
| cd01799 | 75 | Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HO | 93.33 | |
| cd01812 | 71 | BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-ter | 92.8 | |
| cd01789 | 84 | Alp11_N Ubiquitin-like domain of Alp11 tubulin-fol | 92.79 | |
| cd01810 | 74 | ISG15_repeat2 ISG15 ubiquitin-like protein, second | 92.5 | |
| cd01763 | 87 | Sumo Small ubiquitin-related modifier (SUMO). Smal | 92.31 | |
| PF00240 | 69 | ubiquitin: Ubiquitin family; InterPro: IPR000626 U | 92.2 | |
| cd01806 | 76 | Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also kn | 92.15 | |
| cd01798 | 70 | parkin_N amino-terminal ubiquitin-like of parkin p | 91.91 | |
| cd01809 | 72 | Scythe_N Ubiquitin-like domain of Scythe protein. | 91.58 | |
| cd01795 | 107 | USP48_C USP ubiquitin-specific protease. The USP ( | 91.47 | |
| cd01803 | 76 | Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40 | 91.17 | |
| cd01808 | 71 | hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC | 90.86 | |
| cd01794 | 70 | DC_UbP_C dendritic cell derived ubiquitin-like pro | 90.4 | |
| cd01805 | 77 | RAD23_N Ubiquitin-like domain of RAD23. RAD23 belo | 90.03 | |
| cd01802 | 103 | AN1_N ubiquitin-like domain of AN1. AN1 (also know | 89.88 | |
| cd01797 | 78 | NIRF_N amino-terminal ubiquitin-like domain of Np9 | 89.81 | |
| cd01793 | 74 | Fubi Fubi ubiquitin-like protein. Fubi is a ubiqui | 89.62 | |
| cd01804 | 78 | midnolin_N Ubiquitin-like domain of midnolin. midn | 89.62 | |
| cd01791 | 73 | Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also know | 89.26 | |
| cd01792 | 80 | ISG15_repeat1 ISG15 ubiquitin-like protein, first | 88.78 | |
| PF00789 | 82 | UBX: UBX domain; InterPro: IPR001012 The UBX domai | 88.18 | |
| PF11976 | 72 | Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; Inter | 86.8 | |
| cd01800 | 76 | SF3a120_C Ubiquitin-like domain of Mammalian splic | 86.59 | |
| smart00213 | 64 | UBQ Ubiquitin homologues. Ubiquitin-mediated prote | 86.09 | |
| PF11543 | 80 | UN_NPL4: Nuclear pore localisation protein NPL4; I | 85.64 | |
| cd01813 | 74 | UBP_N UBP ubiquitin processing protease. The UBP ( | 85.53 | |
| cd01769 | 69 | UBL Ubiquitin-like domain of UBL. UBLs function by | 85.51 | |
| smart00166 | 80 | UBX Domain present in ubiquitin-regulatory protein | 83.92 | |
| PF05408 | 193 | Peptidase_C28: Foot-and-mouth virus L-proteinase; | 82.55 |
| >COG5560 UBP12 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-105 Score=867.93 Aligned_cols=682 Identities=33% Similarity=0.533 Sum_probs=497.1
Q ss_pred CCCCcccCcccccccccCCCCCCccccccccCCCcEEEcCHHHHHHHHHHhc-CCCccceEEcccCCCcceeeEEEeceE
Q 040385 36 KRPSGIDNSDLVNDATAEDPGAGPEIVDTLLEGRDYILLPQEVWNQLHSWYG-GGPTLARKVISSGLSQTELAVEVYPLR 114 (827)
Q Consensus 36 ~~pgpIdNs~L~~~~~~~~~~~~~~l~~~l~~~~Dy~~vp~~vW~~l~~wYG-ggp~i~R~Vi~~~~~~~~~~vElyP~~ 114 (827)
..||||+-.+|++- + ...|+..+.++.||.+|.+.+|.+|++||| .|+.++|.++--+. .....+|+||+.
T Consensus 67 ~~pgPi~q~~i~d~----e---~e~lk~sl~e~idysiis~~vw~llvrwyGl~gl~~pr~tvll~s-es~p~ve~yp~~ 138 (823)
T COG5560 67 GSPGPIVQGPIVDF----E---PESLKKSLREGIDYSIISGAVWQLLVRWYGLAGLITPRITVLLPS-ESAPEVESYPVV 138 (823)
T ss_pred CCCCCCCccccccc----C---hhhcchhhhcCCCeeeechHHHHHHHHHhcccccceeeEEecccc-ccCCccccccce
Confidence 56999999999972 1 457999999999999999999999999999 68899999876543 334489999999
Q ss_pred EEEEEcCC---------CCeeEEEecccccHHHHHHHHHHHhCCCCccEEEEEeeCCcccccccccccccc-ccccCCCC
Q 040385 115 LQLLVMPR---------GECSTIRISKKETIGELHRRACSIFYLNLEQICIWDYYGHRKHALMNDMDRTLD-DANIQMDQ 184 (827)
Q Consensus 115 l~~~~~~~---------~~~~~~~~Sk~~ti~~l~~~~~~~f~i~~~~~RlW~~~~~~~~~ll~~~~~tl~-d~~l~~~q 184 (827)
++++.+.. .+...+.+|+..|+.+|.+++..+|-++.+++|||++...+...-+-..+.-+. .+....++
T Consensus 139 f~lh~Lf~ing~~~n~gh~p~~~s~ss~~tlrdl~e~vmnaf~~psD~FRLw~v~~~~~~~r~~~~s~f~~~~~~a~~~~ 218 (823)
T COG5560 139 FKLHWLFSINGSLINLGHDPVPHSASSHGTLRDLSERVMNAFVDPSDDFRLWDVVPEIMGLRLGLDSFFRRYRVLASDGR 218 (823)
T ss_pred EEEEEEEeccchhhhcCCCcceeeccccchHHHHHHHHHHHhcCcccceeEEEecCCcccccccCHHHHhhcchhccchh
Confidence 99987654 134678999999999999999999999999999999875432211100000000 00000111
Q ss_pred e----EEEEEEecCCCCcccCCcccccccccccccccccCCcccccccCCCcccCCCCCCCCCcccCCCCCccCCCCCCC
Q 040385 185 D----ILVEVLDNVNGTNCKSSIQDNGFAEKKASSVLVEPSKSSLSIAGGWSASKGTSRNHSSEISTSPNLASARDSDNT 260 (827)
Q Consensus 185 ~----il~E~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (827)
. +.+|+- .| .+..-+. ....|+.....+ ... +..
T Consensus 219 ~l~~~t~~el~--~d--------------------------~s~lll~--kit~np~wlvds--i~~----------~~n 256 (823)
T COG5560 219 VLHPLTRLELF--ED--------------------------RSVLLLS--KITRNPDWLVDS--IVD----------DHN 256 (823)
T ss_pred hhcccHHHHhc--cc--------------------------hhhhHHh--hhccCCccceee--ecc----------hhh
Confidence 0 001111 00 0000000 000011100000 000 000
Q ss_pred CCCCCccccCCCCCccCcccCCCccchhhHHHhhhCcHHHHHHHHH-hhhhhhccCCCCcHH------------------
Q 040385 261 LGSSGVTTRGASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRE-DYRREINWQNPLGMV------------------ 321 (827)
Q Consensus 261 ~~~~~~~~~~~~~g~~GL~NlGNTCYmNSvLQcL~~~~~l~~~~l~-~~~~~~~~~n~~~~~------------------ 321 (827)
++. . +.-|.+||.||||||||||+||||.|+++|++||+. .|.+++|..||+|++
T Consensus 257 ~si--n----ke~GtcGL~NlGNTCyMNSaLQCL~ht~eLrdyFlsdeye~~iNe~Nplgmhg~vAsayadLik~ly~~~ 330 (823)
T COG5560 257 RSI--N----KEAGTCGLRNLGNTCYMNSALQCLMHTWELRDYFLSDEYEESINEENPLGMHGSVASAYADLIKQLYDGN 330 (823)
T ss_pred hhH--H----hhccccceecCCcceecchHHHHHhccHHHHHHhhhhhhHhhhcccCccchhhhHHHHHHHHHHHHhCcc
Confidence 111 1 113999999999999999999999999999999996 699999999999987
Q ss_pred -----------------------------HHHHHHHHHHHhhhccccCCCceeccCCCCCC---cHHHHHHHHHhhhccC
Q 040385 322 -----------------------------ELLAFLLDGLHEDLNRVKHKPYIKSKDADGRP---DEEVADEYWANHIARN 369 (827)
Q Consensus 322 -----------------------------Efl~~lLd~L~e~l~~~~~~~~~~~~~~~~~~---~~~~a~e~~~~~~~~~ 369 (827)
||++||||+|||||||+.+|||.+.++-.... .+..|+++|..|+.||
T Consensus 331 ~haf~Ps~fK~tIG~fn~~fsGy~QQDSqEFiaflLDgLHEdLnRI~~KpytskPdL~~~d~~~vKk~a~ecW~~H~kRN 410 (823)
T COG5560 331 LHAFTPSGFKKTIGSFNEEFSGYDQQDSQEFIAFLLDGLHEDLNRIIKKPYTSKPDLSPGDDVVVKKKAKECWWEHLKRN 410 (823)
T ss_pred ccccChHHHHHHHhhhHHHhcCccchhHHHHHHHHHHHHHHHHHHhhcCcccCCCCCCCcchHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999987644333 3678999999999999
Q ss_pred CCceeecccceEeeeEecCCCCCeeeeecCceeEEEeCCCCccceEEEEEEcCCCCCcCeEEEEEecCCCcHHHHHHHHH
Q 040385 370 DSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLG 449 (827)
Q Consensus 370 ~s~I~~lF~G~~~s~l~C~~C~~~s~~~e~F~~LsL~lp~~~~~~~~~~~~~~~~~~~p~~~~v~~~k~~~~~~l~~~l~ 449 (827)
+|+|+|+|+|.++||+.|+.|+.+|++||||++|+||||....|..++++||.+|...| ..+++.+.+++.+|+..+.
T Consensus 411 dSiItdLFqgmyKSTL~Cp~C~~vsitfDPfmdlTLPLPvs~vw~htiv~fp~~g~~~p--l~iel~~sSt~~~lk~lv~ 488 (823)
T COG5560 411 DSIITDLFQGMYKSTLTCPGCGSVSITFDPFMDLTLPLPVSMVWKHTIVVFPESGRRQP--LKIELDASSTIRGLKKLVD 488 (823)
T ss_pred cccHHHHHHHHhhceeeccCcCceeeeecchhhccccCchhhcccccEEEECCCCCCCc--eEEEEeccchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999888 5677888999999999988
Q ss_pred hhcCCCCCCcEEEEEEeCCceEEeccCcccc-ccccCCCCcEEEEEccCCcccceEEEEeeeecccCcCccccccCceee
Q 040385 450 NICSLKQSEELKVAEIQNHSIQRFLDDPLIS-LSTIKDDDHLAAYRVPKLVKKAVFLQLIHRLQEQEPGAAQTTSQWKAY 528 (827)
Q Consensus 450 ~~~~~~~~~~l~~~e~~~~~~~~~~~d~~~~-l~~i~~~d~i~~ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 528 (827)
+..|+...-.+.+.++|.++.++.++...+. +..|...|.+|.|+ ...+...++++|-+.+. ...+...|
T Consensus 489 ~~~gk~gc~ei~v~~iy~g~~y~~l~~~dk~ll~~I~~~d~vylYe---~~~ngi~vpvvh~~~~~------gYks~rlF 559 (823)
T COG5560 489 AEYGKLGCFEIKVMCIYYGGNYNMLEPADKVLLQDIPQTDFVYLYE---TNDNGIEVPVVHLRIEK------GYKSKRLF 559 (823)
T ss_pred HHhccCCccceeEEEEEeccchhhcchhhHHHHhhcCccceEEEee---cCCCCeEEEEEeccccc------cccchhhh
Confidence 8777766668899999999999999876664 45799999999999 44455888999985432 25677899
Q ss_pred ccce-EEEeecCCCCCHHHHHHHHHHHhCCcccccccccCCCCCCCCcccCCCCCCCCCCCCCCCcccccccCccccCCC
Q 040385 529 GTPL-VSSISRDDVISSGKIQSTVQRMLSPFLKKESLMHADSFDPSSMVTTVDPSGEAHSNSSSNIAKEDASSSKAVTLP 607 (827)
Q Consensus 529 g~P~-~~~~~~~~~~s~~~i~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 607 (827)
|.|| .+.+.. ...-.+++.+.+.+.+-...... ....-++..... . .++......++..
T Consensus 560 g~pflqlnv~~-~~~i~~kLvkE~~ell~~v~~k~----tdvd~~~~q~~l-~--------------r~es~p~~wl~l~ 619 (823)
T COG5560 560 GDPFLQLNVLI-KASIYDKLVKEFEELLVLVEMKK----TDVDLVSEQVRL-L--------------REESSPSSWLKLE 619 (823)
T ss_pred CCcceEEEeec-chhhHHHHHHHHHHHHHHHhhcc----hhhhhhhhhccc-h--------------hcccCcchhhhhh
Confidence 9996 344431 12222333222222211110000 000000000000 0 0000000000000
Q ss_pred ----CcceEEecCCCccccCCcCCCcccccCCCCCceEEEEecChhhHhhhhh-hhhhhhhhhccCCcccccCCCCCCCH
Q 040385 608 ----NLPLQLVDESNVCFDLSVEGDKTIRIPSSSTSIVVYVDWSQKLLEKYNT-HFLENLLEVFKNGPVTKKARTEPLSL 682 (827)
Q Consensus 608 ----~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~sL 682 (827)
.-....+++.+ . + .....+.+.++|....+....+ .......++ + ...+.+||
T Consensus 620 teid~kree~veeE~-----------~--~-n~nd~vvi~cew~ek~y~~lFsy~~lw~~~ei---~-----~~~rtiTL 677 (823)
T COG5560 620 TEIDTKREEQVEEEG-----------Q--M-NFNDAVVISCEWEEKRYLSLFSYDPLWTIREI---G-----AAERTITL 677 (823)
T ss_pred hhccchhhhhhhhhh-----------c--c-CCCcceEEeeeccccchhhhhcCCccchhHHh---h-----hccCCCcH
Confidence 00000000000 0 0 1123467789999877654322 111111111 0 01368999
Q ss_pred HHHHHHhhcccccCCCCCCCCccCcccceeEEEEEeeecCCeEEEEEeeeeecccccceeeeeEeccccccccccccccC
Q 040385 683 YTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVANK 762 (827)
Q Consensus 683 ~dCL~~F~~~E~L~~~d~~~C~~C~~~~~a~k~~~i~~lP~vLiihLkRF~~~~~~~~Ki~~~V~fPl~~Ldl~~~~~~~ 762 (827)
+|||++|.++|.|+..|.||||.||.+++|+|++.||++|.|||||||||++.+..+.|+++.|+|||.+|||+.+....
T Consensus 678 ~dCl~eFskpEqLgl~DswyCpgCkefrqasKqmelwrlP~iLiihLkRFss~rsfrdKiddlVeyPiddldLs~~~~~~ 757 (823)
T COG5560 678 QDCLNEFSKPEQLGLSDSWYCPGCKEFRQASKQMELWRLPMILIIHLKRFSSVRSFRDKIDDLVEYPIDDLDLSGVEYMV 757 (823)
T ss_pred HHHHHHhccHhhcCCcccccCCchHhhhhhhhhhhhhcCChheeeehhhhhhcccchhhhhhhhccccccccccceEEee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998877
Q ss_pred CCCccceEEEEEEEEeecCCCcceEEEEEEeCCCCCEEEEeCCcceecCcccccCCCeEEEEeeC
Q 040385 763 NSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827 (827)
Q Consensus 763 ~~~~~~~Y~L~aVi~H~G~~~~GHY~a~~k~~~~~~W~~fnD~~V~~~~~~~v~~~~aYiLfY~R 827 (827)
++ ....|+||||.||+|++++||||||+|++.+++||+|||++|+++.+++.++++||+|||+|
T Consensus 758 ~~-p~liydlyavDNHygglsgGHYtAyarn~~n~~wy~fdDsritevdped~vtssaYvLFyrr 821 (823)
T COG5560 758 DD-PRLIYDLYAVDNHYGGLSGGHYTAYARNFANNGWYLFDDSRITEVDPEDSVTSSAYVLFYRR 821 (823)
T ss_pred cC-cceEEEeeeccccccccCCcceeeeeecccCCceEEecCccccccCccccccceeEEEEEEe
Confidence 55 55999999999999999999999999999999999999999999999999999999999998
|
|
| >KOG1870 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG1865 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >COG5533 UBP5 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >cd02667 Peptidase_C19K A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >cd02663 Peptidase_C19G A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >cd02671 Peptidase_C19O A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >cd02664 Peptidase_C19H A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >cd02668 Peptidase_C19L A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >cd02660 Peptidase_C19D A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >KOG1868 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >cd02669 Peptidase_C19M A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >cd02659 peptidase_C19C A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >cd02662 Peptidase_C19F A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >cd02657 Peptidase_C19A A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >cd02661 Peptidase_C19E A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >cd02658 Peptidase_C19B A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >cd02674 Peptidase_C19R A subfamily of peptidase C19 | Back alignment and domain information |
|---|
| >cd02665 Peptidase_C19I A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >cd02673 Peptidase_C19Q A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >KOG1873 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >cd02672 Peptidase_C19P A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >KOG1867 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >cd02257 Peptidase_C19 Peptidase C19 contains ubiquitinyl hydrolases | Back alignment and domain information |
|---|
| >KOG0944 consensus Ubiquitin-specific protease UBP14 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >cd02666 Peptidase_C19J A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >KOG1866 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PF00443 UCH: Ubiquitin carboxyl-terminal hydrolase; InterPro: IPR001394 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
| >KOG4598 consensus Putative ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >cd02670 Peptidase_C19N A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >COG5207 UBP14 Isopeptidase T [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG1864 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG1863 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PF13423 UCH_1: Ubiquitin carboxyl-terminal hydrolase | Back alignment and domain information |
|---|
| >KOG1871 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG2026 consensus Spindle pole body protein - Sad1p [Cytoskeleton] | Back alignment and domain information |
|---|
| >PF06337 DUSP: DUSP domain; InterPro: IPR006615 Deubiquitinating enzymes (DUB) form a large family of cysteine protease that can deconjugate ubiquitin or ubiquitin-like proteins (see PDOC00271 from PROSITEDOC) from ubiquitin-conjugated proteins | Back alignment and domain information |
|---|
| >smart00695 DUSP Domain in ubiquitin-specific proteases | Back alignment and domain information |
|---|
| >PF14836 Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A3O_B 3PPA_A 3T9L_A 4A3P_A 3PV1_A | Back alignment and domain information |
|---|
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A | Back alignment and domain information |
|---|
| >PF15499 Peptidase_C98: Ubiquitin-specific peptidase-like, SUMO isopeptidase | Back alignment and domain information |
|---|
| >PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A | Back alignment and domain information |
|---|
| >cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain | Back alignment and domain information |
|---|
| >PTZ00044 ubiquitin; Provisional | Back alignment and domain information |
|---|
| >cd01807 GDX_N ubiquitin-like domain of GDX | Back alignment and domain information |
|---|
| >cd01799 Hoil1_N Ubiquitin-like domain of HOIL1 | Back alignment and domain information |
|---|
| >cd01812 BAG1_N Ubiquitin-like domain of BAG1 | Back alignment and domain information |
|---|
| >cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B | Back alignment and domain information |
|---|
| >cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2 | Back alignment and domain information |
|---|
| >cd01763 Sumo Small ubiquitin-related modifier (SUMO) | Back alignment and domain information |
|---|
| >PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade | Back alignment and domain information |
|---|
| >cd01806 Nedd8 Nebb8-like ubiquitin protein | Back alignment and domain information |
|---|
| >cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein | Back alignment and domain information |
|---|
| >cd01809 Scythe_N Ubiquitin-like domain of Scythe protein | Back alignment and domain information |
|---|
| >cd01795 USP48_C USP ubiquitin-specific protease | Back alignment and domain information |
|---|
| >cd01803 Ubiquitin Ubiquitin | Back alignment and domain information |
|---|
| >cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2 | Back alignment and domain information |
|---|
| >cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein | Back alignment and domain information |
|---|
| >cd01805 RAD23_N Ubiquitin-like domain of RAD23 | Back alignment and domain information |
|---|
| >cd01802 AN1_N ubiquitin-like domain of AN1 | Back alignment and domain information |
|---|
| >cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF | Back alignment and domain information |
|---|
| >cd01793 Fubi Fubi ubiquitin-like protein | Back alignment and domain information |
|---|
| >cd01804 midnolin_N Ubiquitin-like domain of midnolin | Back alignment and domain information |
|---|
| >cd01791 Ubl5 UBL5 ubiquitin-like modifier | Back alignment and domain information |
|---|
| >cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2 | Back alignment and domain information |
|---|
| >PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast | Back alignment and domain information |
|---|
| >PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins | Back alignment and domain information |
|---|
| >cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120 | Back alignment and domain information |
|---|
| >smart00213 UBQ Ubiquitin homologues | Back alignment and domain information |
|---|
| >PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway | Back alignment and domain information |
|---|
| >cd01813 UBP_N UBP ubiquitin processing protease | Back alignment and domain information |
|---|
| >cd01769 UBL Ubiquitin-like domain of UBL | Back alignment and domain information |
|---|
| >smart00166 UBX Domain present in ubiquitin-regulatory proteins | Back alignment and domain information |
|---|
| >PF05408 Peptidase_C28: Foot-and-mouth virus L-proteinase; InterPro: IPR008739 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 827 | ||||
| 2y6e_A | 367 | Ubiquitin Specific Protease 4 Is Inhibited By Its U | 4e-41 | ||
| 3n3k_A | 396 | The Catalytic Domain Of Usp8 In Complex With A Usp8 | 4e-32 | ||
| 2gfo_A | 396 | Structure Of The Catalytic Domain Of Human Ubiquiti | 4e-32 | ||
| 3mtn_A | 373 | Usp21 In Complex With A Ubiquitin-based, Usp21-spec | 3e-26 | ||
| 2y5b_A | 370 | Structure Of Usp21 In Complex With Linear Diubiquit | 4e-26 | ||
| 3i3t_A | 355 | Crystal Structure Of Covalent Ubiquitin-usp21 Compl | 4e-26 | ||
| 3v6c_A | 367 | Crystal Structure Of Usp2 In Complex With Mutated U | 4e-24 | ||
| 2hd5_A | 359 | Usp2 In Complex With Ubiquitin Length = 359 | 4e-24 | ||
| 3nhe_A | 348 | High Resolution Structure (1.26a) Of Usp2a In Compl | 5e-24 | ||
| 2ibi_A | 374 | Covalent Ubiquitin-Usp2 Complex Length = 374 | 6e-24 | ||
| 3m99_A | 471 | Structure Of The Ubp8-Sgf11-Sgf73-Sus1 Saga Dub Mod | 3e-19 | ||
| 3mhh_A | 476 | Structure Of The Saga Ubp8SGF11SUS1SGF73 DUB MODULE | 3e-19 | ||
| 4fip_A | 476 | Structure Of The Saga Ubp8(S144n)SGF11(1-72, Delta- | 3e-19 | ||
| 3jyu_A | 231 | Crystal Structure Of The N-Terminal Domains Of The | 8e-13 | ||
| 3ppa_A | 237 | Structure Of The Dusp-Ubl Domains Of Usp15 Length = | 2e-12 | ||
| 3t9l_A | 230 | Structure Of N-Terminal Dusp-Ubl Domains Of Human U | 2e-12 | ||
| 4a3o_A | 220 | Crystal Structure Of The Usp15 Dusp-Ubl Monomer Len | 2e-12 | ||
| 3pv1_A | 225 | Crystal Structure Of The Usp15 Dusp-Ubl Domains Len | 2e-12 | ||
| 4a3p_A | 217 | Structure Of Usp15 Dusp-Ubl Deletion Mutant Length | 3e-11 | ||
| 3lmn_A | 135 | Oligomeric Structure Of The Dusp Domain Of Human Us | 6e-07 | ||
| 1w6v_A | 141 | Solution Structure Of The Dusp Domain Of Husp15 Len | 2e-04 | ||
| 1vjv_A | 415 | Crystal Structure Of Ubiquitin Carboxyl-terminal Hy | 2e-04 |
| >pdb|2Y6E|A Chain A, Ubiquitin Specific Protease 4 Is Inhibited By Its Ubiquitin- Like Domain Length = 367 | Back alignment and structure |
|
| >pdb|3N3K|A Chain A, The Catalytic Domain Of Usp8 In Complex With A Usp8 Specific Inhibitor Length = 396 | Back alignment and structure |
| >pdb|2GFO|A Chain A, Structure Of The Catalytic Domain Of Human Ubiquitin Carboxyl-terminal Hydrolase 8 Length = 396 | Back alignment and structure |
| >pdb|3MTN|A Chain A, Usp21 In Complex With A Ubiquitin-based, Usp21-specific Inhibitor Length = 373 | Back alignment and structure |
| >pdb|2Y5B|A Chain A, Structure Of Usp21 In Complex With Linear Diubiquitin-Aldehyde Length = 370 | Back alignment and structure |
| >pdb|3I3T|A Chain A, Crystal Structure Of Covalent Ubiquitin-usp21 Complex Length = 355 | Back alignment and structure |
| >pdb|3V6C|A Chain A, Crystal Structure Of Usp2 In Complex With Mutated Ubiquitin Length = 367 | Back alignment and structure |
| >pdb|2HD5|A Chain A, Usp2 In Complex With Ubiquitin Length = 359 | Back alignment and structure |
| >pdb|3NHE|A Chain A, High Resolution Structure (1.26a) Of Usp2a In Complex With Ubiquitin Length = 348 | Back alignment and structure |
| >pdb|2IBI|A Chain A, Covalent Ubiquitin-Usp2 Complex Length = 374 | Back alignment and structure |
| >pdb|3M99|A Chain A, Structure Of The Ubp8-Sgf11-Sgf73-Sus1 Saga Dub Module Length = 471 | Back alignment and structure |
| >pdb|3MHH|A Chain A, Structure Of The Saga Ubp8SGF11SUS1SGF73 DUB MODULE Length = 476 | Back alignment and structure |
| >pdb|4FIP|A Chain A, Structure Of The Saga Ubp8(S144n)SGF11(1-72, Delta-Znf)SUS1SGF73 Dub Module Length = 476 | Back alignment and structure |
| >pdb|3JYU|A Chain A, Crystal Structure Of The N-Terminal Domains Of The Ubiquitin Specific Peptidase 4 (Usp4) Length = 231 | Back alignment and structure |
| >pdb|3PPA|A Chain A, Structure Of The Dusp-Ubl Domains Of Usp15 Length = 237 | Back alignment and structure |
| >pdb|3T9L|A Chain A, Structure Of N-Terminal Dusp-Ubl Domains Of Human Usp15 Length = 230 | Back alignment and structure |
| >pdb|4A3O|A Chain A, Crystal Structure Of The Usp15 Dusp-Ubl Monomer Length = 220 | Back alignment and structure |
| >pdb|3PV1|A Chain A, Crystal Structure Of The Usp15 Dusp-Ubl Domains Length = 225 | Back alignment and structure |
| >pdb|4A3P|A Chain A, Structure Of Usp15 Dusp-Ubl Deletion Mutant Length = 217 | Back alignment and structure |
| >pdb|3LMN|A Chain A, Oligomeric Structure Of The Dusp Domain Of Human Usp15 Length = 135 | Back alignment and structure |
| >pdb|1VJV|A Chain A, Crystal Structure Of Ubiquitin Carboxyl-terminal Hydrolase 6 (yfr010w) From Saccharomyces Cerevisiae At 1.74 A Resolution Length = 415 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens} Length = 367 | Back alignment and structure |
|---|
Score = 219 bits (559), Expect = 2e-64
Identities = 75/152 (49%), Positives = 106/152 (69%), Gaps = 1/152 (0%)
Query: 676 RTEPLSLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYS 735
+ ++L C+E F E L D WYCP CK+ +QA+KK DLW LP++LV+HLKRFSY+
Sbjct: 207 KKTTVALRDCIELFTTMETLGEHDPWYCPNCKKHQQATKKFDLWSLPKILVVHLKRFSYN 266
Query: 736 RSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLD 795
R + KL+T V FPI N++++V N + +R +Y+L A++NHYG MG GHYTA+ K
Sbjct: 267 RYWRDKLDTVVEFPIRGLNMSEFVCNLS-ARPYVYDLIAVSNHYGAMGVGHYTAYAKNKL 325
Query: 796 ENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827
+WY FDDS++S +ED + + AAYVLFY+R
Sbjct: 326 NGKWYYFDDSNVSLASEDQIVTKAAYVLFYQR 357
|
| >2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens} Length = 367 | Back alignment and structure |
|---|
| >3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} PDB: 2hd5_A 2ibi_A Length = 348 | Back alignment and structure |
|---|
| >3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} PDB: 2hd5_A 2ibi_A Length = 348 | Back alignment and structure |
|---|
| >2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A Length = 396 | Back alignment and structure |
|---|
| >2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A Length = 396 | Back alignment and structure |
|---|
| >3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} PDB: 2y5b_A 3mtn_A Length = 355 | Back alignment and structure |
|---|
| >3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} PDB: 2y5b_A 3mtn_A Length = 355 | Back alignment and structure |
|---|
| >3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 3m99_A Length = 476 | Back alignment and structure |
|---|
| >3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 3m99_A Length = 476 | Back alignment and structure |
|---|
| >3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus} Length = 231 | Back alignment and structure |
|---|
| >2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A Length = 404 | Back alignment and structure |
|---|
| >2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A Length = 404 | Back alignment and structure |
|---|
| >1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A Length = 353 | Back alignment and structure |
|---|
| >1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A Length = 353 | Back alignment and structure |
|---|
| >4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A Length = 217 | Back alignment and structure |
|---|
| >2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens} Length = 522 | Back alignment and structure |
|---|
| >2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens} Length = 522 | Back alignment and structure |
|---|
| >3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens} Length = 854 | Back alignment and structure |
|---|
| >3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens} Length = 854 | Back alignment and structure |
|---|
| >3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens} Length = 854 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9 Length = 415 | Back alignment and structure |
|---|
| >1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9 Length = 415 | Back alignment and structure |
|---|
| >1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9 Length = 415 | Back alignment and structure |
|---|
| >2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens} Length = 530 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 827 | |||
| 2y6e_A | 367 | Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; | 100.0 | |
| 2gfo_A | 396 | Ubiquitin carboxyl-terminal hydrolase 8; protease, | 100.0 | |
| 3nhe_A | 348 | Ubiquitin carboxyl-terminal hydrolase 2; cysteine | 100.0 | |
| 3i3t_A | 355 | Ubiquitin carboxyl-terminal hydrolase 21; hydrolas | 100.0 | |
| 1nb8_A | 353 | Ubiquitin carboxyl-terminal hydrolase 7; UBP, deub | 100.0 | |
| 3mhs_A | 476 | Ubiquitin carboxyl-terminal hydrolase 8; multi-pro | 100.0 | |
| 2f1z_A | 522 | Ubiquitin carboxyl-terminal hydrolase 7; hausp, US | 100.0 | |
| 2ayn_A | 404 | Ubiquitin carboxyl-terminal hydrolase 14; deubiqui | 100.0 | |
| 1vjv_A | 415 | Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, | 100.0 | |
| 3ihp_A | 854 | Ubiquitin carboxyl-terminal hydrolase 5; hydrolase | 100.0 | |
| 3jyu_A | 231 | Ubiquitin carboxyl-terminal hydrolase; domain in u | 100.0 | |
| 4a3p_A | 217 | Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {H | 100.0 | |
| 2vhf_A | 374 | Ubiquitin carboxyl-terminal hydrolase CYLD; cytoki | 99.83 | |
| 1w6v_A | 141 | Ubiquitin carboxyl-terminal hydrolase 15; UCH, USP | 99.74 | |
| 2ylm_A | 530 | Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70 | 99.29 | |
| 3plu_A | 93 | Ubiquitin-like modifier HUB1; ubiquitin-like, HUB- | 95.09 | |
| 2kjr_A | 95 | CG11242; UBL, ubiquitin, ubiquitin-like, structura | 94.85 | |
| 1wjn_A | 97 | Tubulin-folding protein TBCE; ubiquitin-like domai | 94.47 | |
| 4dbg_A | 105 | Ranbp-type and C3HC4-type zinc finger-containing; | 94.15 | |
| 2kj6_A | 97 | Tubulin folding cofactor B; methods development, N | 93.97 | |
| 3phx_B | 79 | Ubiquitin-like protein ISG15; OTU domain, DE-ubiqu | 93.49 | |
| 4b6w_A | 86 | Tubulin-specific chaperone; CAP-Gly, ubiquitin-lik | 93.36 | |
| 3v6c_B | 91 | Ubiquitin; structural genomics, structural genomic | 93.33 | |
| 3a9j_A | 76 | Ubiquitin; protein complex, cytoplasm, isopeptide | 93.3 | |
| 3n3k_B | 85 | Ubiquitin; hydrolase, protease, thiol protease, DU | 93.3 | |
| 2bwf_A | 77 | Ubiquitin-like protein DSK2; signaling protein, UB | 93.08 | |
| 4dwf_A | 90 | HLA-B-associated transcript 3; ubiquitin-like doma | 92.94 | |
| 2kan_A | 94 | Uncharacterized protein AR3433A; ubiquitin fold, a | 92.83 | |
| 3k9o_B | 96 | Ubiquitin, UBB+1; E2-25K, complex structure, ATP-b | 92.63 | |
| 3dbh_I | 88 | NEDD8; cell cycle, activating enzyme, apoptosis, m | 92.62 | |
| 4eew_A | 88 | Large proline-rich protein BAG6; ubiquitin-like fo | 92.51 | |
| 3mtn_B | 85 | UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquit | 92.51 | |
| 1wh3_A | 87 | 59 kDa 2'-5'-oligoadenylate synthetase like protei | 92.49 | |
| 1ndd_A | 76 | NEDD8, protein (ubiquitin-like protein NEDD8); pro | 92.44 | |
| 1yqb_A | 100 | Ubiquilin 3; structural genomics consortium, ubiqu | 92.38 | |
| 2daf_A | 118 | FLJ35834 protein; hypothetical protein FLJ35834, u | 92.24 | |
| 1sif_A | 88 | Ubiquitin; hydrophobic mutants, folding, stability | 92.23 | |
| 2klc_A | 101 | Ubiquilin-1; ubiquitin-like, structural genomics, | 92.22 | |
| 1t0y_A | 122 | Tubulin folding cofactor B; ubiquitin-like, cytosk | 92.15 | |
| 1v6e_A | 95 | Cytoskeleton-associated protein 1; tubulin-specifi | 92.13 | |
| 4fbj_B | 88 | NEDD8; effector-HOST target complex, glutamine dea | 92.06 | |
| 1wx7_A | 106 | Ubiquilin 3; ubiquitin-like domain, structural gen | 92.02 | |
| 1yx5_B | 98 | Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo s | 91.86 | |
| 1v5o_A | 102 | 1700011N24RIK protein; hypothetical protein, ubiqu | 91.78 | |
| 2kd0_A | 85 | LRR repeats and ubiquitin-like domain-containing p | 91.77 | |
| 1j8c_A | 125 | Ubiquitin-like protein hplic-2; ubiquitin-like dom | 91.69 | |
| 2faz_A | 78 | Ubiquitin-like containing PHD and ring finger DOM | 91.54 | |
| 2hj8_A | 88 | Interferon-induced 17 kDa protein; HR2873B, human | 91.52 | |
| 3q3f_A | 189 | Ribonuclease/ubiquitin chimeric protein; domain SW | 91.43 | |
| 1wxv_A | 92 | BAG-family molecular chaperone regulator-1; struct | 91.4 | |
| 2l7r_A | 93 | Ubiquitin-like protein FUBI; structural genomics, | 91.15 | |
| 4hcn_B | 98 | Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidas | 91.07 | |
| 2wyq_A | 85 | HHR23A, UV excision repair protein RAD23 homolog A | 90.86 | |
| 2dzi_A | 81 | Ubiquitin-like protein 4A; GDX, structural genomic | 90.79 | |
| 3vdz_A | 111 | Ubiquitin-40S ribosomal protein S27A; gadolinium, | 90.77 | |
| 2io0_B | 91 | Small ubiquitin-related modifier 2 precursor; SUMO | 90.74 | |
| 1wy8_A | 89 | NP95-like ring finger protein, isoform A; ubiquiti | 90.68 | |
| 2ojr_A | 111 | Ubiquitin; lanthide-binding TAG, terbium, TB, SAD | 90.68 | |
| 1wju_A | 100 | NEDD8 ultimate buster-1; ubiquitin-like domain, st | 90.64 | |
| 2kk8_A | 84 | Uncharacterized protein AT4G05270; solution arabid | 90.63 | |
| 3m63_B | 101 | Ubiquitin domain-containing protein DSK2; armadill | 90.37 | |
| 3m62_B | 106 | UV excision repair protein RAD23; armadillo-like r | 90.29 | |
| 1uh6_A | 100 | Ubiquitin-like 5; beta-grAsp fold, structural geno | 90.06 | |
| 2uyz_B | 79 | Small ubiquitin-related modifier 1; sumoylation, c | 89.72 | |
| 1wx8_A | 96 | Riken cDNA 4931431F19; ubiquitin-like domain, ubiq | 89.68 | |
| 1we6_A | 111 | Splicing factor, putative; structural genomics, ub | 88.89 | |
| 1wyw_B | 97 | Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Ho | 88.87 | |
| 2fnj_B | 118 | Transcription elongation factor B polypeptide 2; b | 88.34 | |
| 1we7_A | 115 | SF3A1 protein; structural genomics, ubiquitin-like | 88.33 | |
| 2io1_B | 94 | Small ubiquitin-related modifier 3 precursor; SUMO | 88.28 | |
| 3a4r_A | 79 | Nfatc2-interacting protein; ubiquitin fold, coiled | 88.28 | |
| 3qx1_A | 84 | FAS-associated factor 1; UBX, protein binding, P97 | 88.03 | |
| 1wm3_A | 72 | Ubiquitin-like protein SMT3B; ubiquitin fold, half | 87.97 | |
| 1v86_A | 95 | DNA segment, CHR 7, wayne state university 128, ex | 87.96 | |
| 1uel_A | 95 | HHR23B, UV excision repair protein RAD23 homolog B | 87.77 | |
| 4ajy_B | 118 | Transcription elongation factor B polypeptide 2; E | 87.69 | |
| 2kdi_A | 114 | Ubiquitin, vacuolar protein sorting-associated pro | 87.66 | |
| 1ttn_A | 106 | DC-UBP, dendritic cell-derived ubiquitin-like prot | 87.63 | |
| 2kzr_A | 86 | Ubiquitin thioesterase OTU1; structural genomics, | 86.85 | |
| 1wgg_A | 96 | Ubiquitin carboxyl-terminal hydrolase 14; ubiquiti | 86.42 | |
| 2eke_C | 106 | Ubiquitin-like protein SMT3; UBC9, SUMO binding mo | 86.37 | |
| 2d07_B | 93 | Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Ho | 86.22 | |
| 1wz0_A | 104 | Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-li | 85.66 | |
| 3kyd_D | 115 | Small ubiquitin-related modifier 1; SUMO, thioeste | 85.53 | |
| 1v2y_A | 105 | 3300001G02RIK protein; hypothetical protein, ubiqu | 84.87 | |
| 3u30_A | 172 | Ubiquitin, linear DI-ubiquitin; immune system; 2.4 | 84.55 | |
| 1wf9_A | 107 | NPL4 family protein; beta-grAsp fold like domain, | 84.12 | |
| 3rt3_B | 159 | Ubiquitin-like protein ISG15; ubiquitin-like domai | 83.49 | |
| 4a20_A | 98 | Ubiquitin-like protein MDY2; protein binding, GET- | 83.4 | |
| 1v5t_A | 90 | 8430435I17RIK protein; hypothetical protein, ubiqu | 83.35 | |
| 2pjh_A | 80 | Protein NPL4, nuclear protein localization protein | 82.47 | |
| 2k8h_A | 110 | Small ubiquitin protein; SUMO, post-translational | 82.27 | |
| 3l0w_B | 169 | Monoubiquitinated proliferating cell nuclear antig | 81.86 | |
| 3rt3_B | 159 | Ubiquitin-like protein ISG15; ubiquitin-like domai | 81.85 | |
| 3b08_A | 152 | Polyubiquitin-C, ubiquitin; protein complex, signa | 81.15 | |
| 1wgd_A | 93 | Homocysteine-responsive endoplasmic reticulum- res | 80.89 | |
| 3b08_A | 152 | Polyubiquitin-C, ubiquitin; protein complex, signa | 80.6 |
| >2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-65 Score=568.44 Aligned_cols=306 Identities=56% Similarity=0.979 Sum_probs=263.7
Q ss_pred CCCCccCcccCCCccchhhHHHhhhCcHHHHHHHHHh-hhhhhccCCCC-------------------------------
Q 040385 271 ASVGLTGLLNLGNTCFMNSAIQCLVHTPEFARYFRED-YRREINWQNPL------------------------------- 318 (827)
Q Consensus 271 ~~~g~~GL~NlGNTCYmNSvLQcL~~~~~l~~~~l~~-~~~~~~~~n~~------------------------------- 318 (827)
..+|++||.|+||||||||+||||+|+|+|++||+.. +..+++..+|.
T Consensus 4 ~~~g~~GL~NlGNTCYmNSvLQ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~~~~i~P~~~~ 83 (367)
T 2y6e_A 4 IQPGLCGLGNLGNTCFMNSALQCLSNTAPLTDYFLKDEYEAEINRDNPLGMKGEIAEAYAELIKQMWSGRDAHVAPRMFK 83 (367)
T ss_dssp CCTTCCEECCCSSCHHHHHHHHHHHTCHHHHHHHHTTCGGGGCCSSCTTSCTTHHHHHHHHHHHHHTSSSCSEECCHHHH
T ss_pred CCCCCcCCccCCcchHHHHHHHHHHCCHHHHHHHHcCchhhhccccCCCCcchHHHHHHHHHHHHHHcCCCCCcCHHHHH
Confidence 3589999999999999999999999999999999853 33333333332
Q ss_pred ----------------cHHHHHHHHHHHHHhhhccccCCCceeccCCCCCCcHHHHHHHHHhhhccCCCceeecccceEe
Q 040385 319 ----------------GMVELLAFLLDGLHEDLNRVKHKPYIKSKDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYK 382 (827)
Q Consensus 319 ----------------~~~Efl~~lLd~L~e~l~~~~~~~~~~~~~~~~~~~~~~a~e~~~~~~~~~~s~I~~lF~G~~~ 382 (827)
..+|||.+|||.||++++++..+|+.+..+..+.++...|.+.|..+..++.++|.++|+|+++
T Consensus 84 ~~l~~~~~~f~~~~QqDA~Efl~~LLd~L~~~l~~~~~~~~~~~~~~~g~~~~~~a~~~w~~~~~~~~s~i~~~F~G~l~ 163 (367)
T 2y6e_A 84 TQVGRFAPQFSGYQQQDSQELLAFLLDGLHEDLNRVKKKPYLELKDANGRPDAVVAKEAWENHRLRNDSVIVDTFHGLFK 163 (367)
T ss_dssp HHHHHHCGGGCSSSCCCHHHHHHHHHHHHHHHTCSCSSCCCCCCCCCCSCCHHHHHHHHHHHHHHHCCSHHHHHHCEEEE
T ss_pred HHHHHhhhhcCCCCCCCHHHHHHHHHHHHHHHHHhhccCCccccccccCCchhHHHHHHHHHHHHhcCCccccccCcEEe
Confidence 2239999999999999999999999988888999999999999999999999999999999999
Q ss_pred eeEecCCCCCeeeeecCceeEEEeCCCCccceEEEEEEcCCCCCcCeEEEEEecCCCcHHHHHHHHHhhcCCCCCCcEEE
Q 040385 383 STLVCPVCNKVSVTFDPFMYLSLPLQATTTRTMTVTVFTSDGSALPSTYTVTVPKHGRCRDLIQVLGNICSLKQSEELKV 462 (827)
Q Consensus 383 s~l~C~~C~~~s~~~e~F~~LsL~lp~~~~~~~~~~~~~~~~~~~p~~~~v~~~k~~~~~~l~~~l~~~~~~~~~~~l~~ 462 (827)
++++|..|+++|.++|+|++|+||||......+.+.
T Consensus 164 s~~~C~~C~~~s~~~e~f~~LsL~ip~~~~~~~~~~-------------------------------------------- 199 (367)
T 2y6e_A 164 STLVCPECAKVSVTFDPFCYLTLPLPLKKDRVMEGP-------------------------------------------- 199 (367)
T ss_dssp EEEECTTTCCEEEEEEEESSEEEECCC-----------------------------------------------------
T ss_pred eeEEeCCCCCEeeeEccCeeEEeeCCCCcCCcceee--------------------------------------------
Confidence 999999999999999999999999997642100000
Q ss_pred EEEeCCceEEeccCccccccccCCCCcEEEEEccCCcccceEEEEeeeecccCcCccccccCceeeccceEEEeecCCCC
Q 040385 463 AEIQNHSIQRFLDDPLISLSTIKDDDHLAAYRVPKLVKKAVFLQLIHRLQEQEPGAAQTTSQWKAYGTPLVSSISRDDVI 542 (827)
Q Consensus 463 ~e~~~~~~~~~~~d~~~~l~~i~~~d~i~~ye~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~P~~~~~~~~~~~ 542 (827)
+
T Consensus 200 ----------~--------------------------------------------------------------------- 200 (367)
T 2y6e_A 200 ----------M--------------------------------------------------------------------- 200 (367)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ----------e---------------------------------------------------------------------
Confidence 0
Q ss_pred CHHHHHHHHHHHhCCcccccccccCCCCCCCCcccCCCCCCCCCCCCCCCcccccccCccccCCCCcceEEecCCCcccc
Q 040385 543 SSGKIQSTVQRMLSPFLKKESLMHADSFDPSSMVTTVDPSGEAHSNSSSNIAKEDASSSKAVTLPNLPLQLVDESNVCFD 622 (827)
Q Consensus 543 s~~~i~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 622 (827)
T Consensus 201 -------------------------------------------------------------------------------- 200 (367)
T 2y6e_A 201 -------------------------------------------------------------------------------- 200 (367)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcCCCcccccCCCCCceEEEEecChhhHhhhhhhhhhhhhhhccCCcccccCCCCCCCHHHHHHHhhcccccCCCCCCC
Q 040385 623 LSVEGDKTIRIPSSSTSIVVYVDWSQKLLEKYNTHFLENLLEVFKNGPVTKKARTEPLSLYTCLEAFLREEPLVPEDMWY 702 (827)
Q Consensus 623 ~~~~~~~~~~~~~~~~~~~i~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~dCL~~F~~~E~L~~~d~~~ 702 (827)
|.+. ......++|++||+.|+.+|.|+++++|+
T Consensus 201 -----------------------~~~~------------------------~~~~~~~sL~~~L~~f~~~E~l~~~~~~~ 233 (367)
T 2y6e_A 201 -----------------------LQPQ------------------------KKKKTTVALRDCIELFTTMETLGEHDPWY 233 (367)
T ss_dssp --------------------------------------------------------CEEHHHHHHHHTSCEECCC-CCEE
T ss_pred -----------------------eccc------------------------cccCCCCCHHHHHHHhcccccCCCCCCcc
Confidence 0000 00013458999999999999999999999
Q ss_pred CccCcccceeEEEEEeeecCCeEEEEEeeeeecccccceeeeeEeccccccccccccccCCCCccceEEEEEEEEeecCC
Q 040385 703 CPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGM 782 (827)
Q Consensus 703 C~~C~~~~~a~k~~~i~~lP~vLiihLkRF~~~~~~~~Ki~~~V~fPl~~Ldl~~~~~~~~~~~~~~Y~L~aVi~H~G~~ 782 (827)
|++|++++.|+|++.|+++|+||+||||||.++++...|+++.|.||++.|||++|+..... ....|+|+|||+|.|++
T Consensus 234 C~~C~~~~~a~K~~~i~~lP~vL~i~LkRF~~~~~~~~K~~~~v~fp~~~Ldl~~~~~~~~~-~~~~Y~L~avv~H~G~~ 312 (367)
T 2y6e_A 234 CPNCKKHQQATKKFDLWSLPKILVVHLKRFSYNRYWRDKLDTVVEFPIRGLNMSEFVCNLSA-RPYVYDLIAVSNHYGAM 312 (367)
T ss_dssp ETTTTEEECCEEEEEEEECCSEEEEEEECEEECSSCEEECCCCEECCSSCEECGGGBSCSSS-CCCEEEEEEEEEEECSS
T ss_pred CCCCCCCceEEEEEEEecCCcEEEEEEeCeeecCccceecCceEEecCCcCChhhhccCCCC-CCceEEEEEEeecCCCC
Confidence 99999999999999999999999999999999987889999999999768999999987654 56899999999999999
Q ss_pred CcceEEEEEEeCCCCCEEEEeCCcceecCcccccCCCeEEEEeeC
Q 040385 783 GSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKSAAAYVLFYRR 827 (827)
Q Consensus 783 ~~GHY~a~~k~~~~~~W~~fnD~~V~~~~~~~v~~~~aYiLfY~R 827 (827)
++|||+||+|+..+++||+|||+.|+++++++|.+.+||||||+|
T Consensus 313 ~~GHY~a~~~~~~~~~W~~fnD~~V~~v~~~~v~~~~aYiLfY~r 357 (367)
T 2y6e_A 313 GVGHYTAYAKNKLNGKWYYFDDSNVSLASEDQIVTKAAYVLFYQR 357 (367)
T ss_dssp SSCEEEEEEECTTTCCEEEEETTEEEECCGGGTSSTTEEEEEEEE
T ss_pred CCCeeeEEEEcCCCCeEEEECCCCceECCHHHcCCCCcEEEEEEE
Confidence 999999999986689999999999999999999999999999997
|
| >2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A | Back alignment and structure |
|---|
| >3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} SCOP: d.3.1.9 PDB: 2hd5_A 3v6c_A 3v6e_A 2ibi_A | Back alignment and structure |
|---|
| >3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} SCOP: d.3.1.0 PDB: 2y5b_A 3mtn_A | Back alignment and structure |
|---|
| >1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A | Back alignment and structure |
|---|
| >3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 4fjc_A 4fk5_A 4fip_A 3m99_A | Back alignment and structure |
|---|
| >2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens} | Back alignment and structure |
|---|
| >2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A | Back alignment and structure |
|---|
| >1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9 | Back alignment and structure |
|---|
| >3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
| >3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus} | Back alignment and structure |
|---|
| >4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A | Back alignment and structure |
|---|
| >2vhf_A Ubiquitin carboxyl-terminal hydrolase CYLD; cytokine signalling, linkage specificity, deubiquitinating enzyme, Lys63- linked, anti-oncogene; 2.8A {Homo sapiens} | Back alignment and structure |
|---|
| >2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
| >3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A | Back alignment and structure |
|---|
| >2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster} | Back alignment and structure |
|---|
| >1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A | Back alignment and structure |
|---|
| >2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} | Back alignment and structure |
|---|
| >3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens} | Back alignment and structure |
|---|
| >4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927} | Back alignment and structure |
|---|
| >3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B | Back alignment and structure |
|---|
| >3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ... | Back alignment and structure |
|---|
| >3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S | Back alignment and structure |
|---|
| >4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A | Back alignment and structure |
|---|
| >2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} | Back alignment and structure |
|---|
| >3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A | Back alignment and structure |
|---|
| >3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I | Back alignment and structure |
|---|
| >4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
| >3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A | Back alignment and structure |
|---|
| >1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B | Back alignment and structure |
|---|
| >1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B | Back alignment and structure |
|---|
| >1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana} | Back alignment and structure |
|---|
| >1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens} | Back alignment and structure |
|---|
| >1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A | Back alignment and structure |
|---|
| >2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A | Back alignment and structure |
|---|
| >2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
| >1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana} | Back alignment and structure |
|---|
| >3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B | Back alignment and structure |
|---|
| >1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C | Back alignment and structure |
|---|
| >2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A | Back alignment and structure |
|---|
| >1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A | Back alignment and structure |
|---|
| >2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A | Back alignment and structure |
|---|
| >3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A | Back alignment and structure |
|---|
| >1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B | Back alignment and structure |
|---|
| >1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A* | Back alignment and structure |
|---|
| >2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus} | Back alignment and structure |
|---|
| >1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A | Back alignment and structure |
|---|
| >1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens} | Back alignment and structure |
|---|
| >1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A | Back alignment and structure |
|---|
| >4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A | Back alignment and structure |
|---|
| >1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A | Back alignment and structure |
|---|
| >2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus} | Back alignment and structure |
|---|
| >2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei} | Back alignment and structure |
|---|
| >3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B | Back alignment and structure |
|---|
| >3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A | Back alignment and structure |
|---|
| >3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B | Back alignment and structure |
|---|
| >1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 827 | ||||
| d2gfoa1 | 348 | d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal h | 5e-38 | |
| d2gfoa1 | 348 | d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal h | 5e-23 | |
| d2hd5a1 | 336 | d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hy | 3e-36 | |
| d2hd5a1 | 336 | d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hy | 3e-21 | |
| d1nbfa_ | 347 | d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase | 2e-20 | |
| d1nbfa_ | 347 | d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase | 6e-15 | |
| d1vjva_ | 397 | d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase | 6e-20 | |
| d1vjva_ | 397 | d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase | 3e-12 | |
| d1w6va1 | 120 | d.324.1.1 (A:1-120) Ubiquitin carboxyl-terminal hy | 2e-19 | |
| d2ayna1 | 383 | d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hy | 9e-19 | |
| d2ayna1 | 383 | d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hy | 7e-17 |
| >d2gfoa1 d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal hydrolase 8 {Human (Homo sapiens) [TaxId: 9606]} Length = 348 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Cysteine proteinases superfamily: Cysteine proteinases family: Ubiquitin carboxyl-terminal hydrolase, UCH domain: Ubiquitin carboxyl-terminal hydrolase 8 species: Human (Homo sapiens) [TaxId: 9606]
Score = 143 bits (360), Expect = 5e-38
Identities = 65/147 (44%), Positives = 99/147 (67%), Gaps = 1/147 (0%)
Query: 681 SLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKH 740
+L CL F +EE L + +YC C+ RR + KK+++W+LP VL++HLKRFSY K
Sbjct: 202 TLQDCLRLFSKEEKLTDNNRFYCSHCRARRDSLKKIEIWKLPPVLLVHLKRFSYDGRWKQ 261
Query: 741 KLETFVNFPIHDFNLTKYVANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENRWY 800
KL+T V+FP+ + +L++YV ++ ++ Y L++++NHYGG+ GHYTA+ K RW+
Sbjct: 262 KLQTSVDFPLENLDLSQYVIGPKNNLKK-YNLFSVSNHYGGLDGGHYTAYCKNAARQRWF 320
Query: 801 NFDDSHISPINEDDVKSAAAYVLFYRR 827
FDD +S I+ VKS+AAY+LFY
Sbjct: 321 KFDDHEVSDISVSSVKSSAAYILFYTS 347
|
| >d2gfoa1 d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal hydrolase 8 {Human (Homo sapiens) [TaxId: 9606]} Length = 348 | Back information, alignment and structure |
|---|
| >d2hd5a1 d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hydrolase 2, USP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 336 | Back information, alignment and structure |
|---|
| >d2hd5a1 d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hydrolase 2, USP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 336 | Back information, alignment and structure |
|---|
| >d1nbfa_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP) {Human (Homo sapiens) [TaxId: 9606]} Length = 347 | Back information, alignment and structure |
|---|
| >d1nbfa_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP) {Human (Homo sapiens) [TaxId: 9606]} Length = 347 | Back information, alignment and structure |
|---|
| >d1vjva_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 397 | Back information, alignment and structure |
|---|
| >d1vjva_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 397 | Back information, alignment and structure |
|---|
| >d1w6va1 d.324.1.1 (A:1-120) Ubiquitin carboxyl-terminal hydrolase 15 {Human (Homo sapiens) [TaxId: 9606]} Length = 120 | Back information, alignment and structure |
|---|
| >d2ayna1 d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hydrolase 14 {Human (Homo sapiens) [TaxId: 9606]} Length = 383 | Back information, alignment and structure |
|---|
| >d2ayna1 d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hydrolase 14 {Human (Homo sapiens) [TaxId: 9606]} Length = 383 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 827 | |||
| d1nbfa_ | 347 | Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAU | 100.0 | |
| d2gfoa1 | 348 | Ubiquitin carboxyl-terminal hydrolase 8 {Human (Ho | 100.0 | |
| d2hd5a1 | 336 | Ubiquitin carboxyl-terminal hydrolase 2, USP2 {Hum | 100.0 | |
| d2ayna1 | 383 | Ubiquitin carboxyl-terminal hydrolase 14 {Human (H | 100.0 | |
| d1vjva_ | 397 | Ubiquitin carboxyl-terminal hydrolase 6 {Baker's y | 100.0 | |
| d1w6va1 | 120 | Ubiquitin carboxyl-terminal hydrolase 15 {Human (H | 99.73 | |
| d1wjna_ | 97 | Tubulin-folding protein TbcE {Mouse (Mus musculus) | 95.55 | |
| d1yqba1 | 84 | Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]} | 95.3 | |
| d1t0ya_ | 90 | Ubiquitin-like domain of tubulin folding cofactor | 95.18 | |
| d1j8ca_ | 103 | Ubiquitin-like N-terminal domain of PLIC-2 {Human | 94.84 | |
| d1euvb_ | 79 | SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomy | 94.4 | |
| d2bwfa1 | 73 | DSK2 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 94.34 | |
| d1z2ma2 | 76 | Interferon-induced 15 kDa protein {Human (Homo sap | 93.91 | |
| d1v6ea_ | 95 | Ubiquitin-like domain of tubulin folding cofactor | 93.87 | |
| d1wxva1 | 81 | Bag-family molecular chaperone regulator-1 {Human | 93.62 | |
| d1wx8a1 | 83 | 4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090] | 92.78 | |
| d1v86a_ | 95 | hypothetical D7wsu128e protein {Mouse (Mus musculu | 92.75 | |
| d1m94a_ | 73 | Ubiquitin-like modifier protein hub1 {Baker's yeas | 92.61 | |
| d1ogwa_ | 76 | Ubiquitin {Human (Homo sapiens) [TaxId: 9606]} | 92.22 | |
| d1bt0a_ | 73 | Rub1 {Mouse-ear cress (Arabidopsis thaliana) [TaxI | 92.07 | |
| d2uyzb1 | 77 | SUMO-1 (smt3 homologue) {Human (Homo sapiens) [Tax | 92.07 | |
| d1v5oa_ | 102 | 1700011n24rik protein {Mouse (Mus musculus) [TaxId | 92.03 | |
| d1wjua_ | 100 | NEDD8 ultimate buster-1, NUB1 {Human (Homo sapiens | 91.74 | |
| d1z2ma1 | 76 | Interferon-induced 15 kDa protein {Human (Homo sap | 91.44 | |
| d1uh6a_ | 100 | Ubiquitin-like protein 5, ubl5 {Mouse (Mus musculu | 91.38 | |
| d1ttna1 | 80 | Dendritic cell-derived ubiquitin-like protein {Hum | 91.29 | |
| d1wy8a1 | 76 | Ubiquitin-like PHD and RING finger domain-containi | 91.2 | |
| d1zkha1 | 86 | Splicing factor 3 subunit 1, C-terminal domain {Hu | 90.66 | |
| d1wh3a_ | 87 | 2'-5'-oligoadenylate synthetase-like protein, OASL | 90.57 | |
| d2zeqa1 | 78 | Ubiquitin-like domain of parkin {Mouse (Mus muscul | 90.36 | |
| d2faza1 | 76 | Ubiquitin-like PHD and RING finger domain-containi | 90.25 | |
| d1h8ca_ | 82 | Fas-associated factor 1, Faf1 {Human (Homo sapiens | 90.17 | |
| d1oqya4 | 77 | Ubiquitin-like domain of Rad23 homolog A (Hhr23a) | 90.13 | |
| d1v5ta_ | 90 | 8430435i17rik protein {Mouse (Mus musculus) [TaxId | 89.82 | |
| d1we6a_ | 111 | Splicing factor 3 subunit 1, C-terminal domain {Th | 89.62 | |
| d1wgha_ | 116 | Ubiquitin-like protein 3, Ubl3 {Mouse (Mus musculu | 88.63 | |
| d1uela_ | 95 | Ubiquitin-like domain of Rad23 homolog B (Hhr23B) | 88.11 | |
| d1wm3a_ | 72 | SUMO-2 {Human (Homo sapiens) [TaxId: 9606]} | 87.74 | |
| d2c9wb1 | 103 | Elongin B {Human (Homo sapiens) [TaxId: 9606]} | 87.23 | |
| d1v2ya_ | 105 | Ubiquitin-like protein 3300001g02rik {Mouse (Mus m | 85.02 | |
| d1wgga_ | 96 | Ubiquitin carboxyl-terminal hydrolase 14 {Mouse (M | 84.28 | |
| d1wj4a_ | 124 | Hypothetical protein KIAA0794 {Human (Homo sapiens | 83.47 | |
| d2cr5a1 | 96 | UBX domain-containing protein 6 (Reproduction 8) { | 83.01 | |
| d1wx9a1 | 73 | Large proline-rich protein BAT3 {Human (Homo sapie | 82.75 | |
| d1wxma1 | 73 | A-Raf proto-oncogene serine/threonine-protein kina | 81.12 |
| >d1nbfa_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a+b) fold: Cysteine proteinases superfamily: Cysteine proteinases family: Ubiquitin carboxyl-terminal hydrolase, UCH domain: Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=8.9e-51 Score=447.03 Aligned_cols=145 Identities=23% Similarity=0.467 Sum_probs=129.5
Q ss_pred CHHHHHHHhhcccccCCCCCCCCccCcccceeEEEEEeeecCCeEEEEEeeeeecc--cccceeeeeEeccccccccccc
Q 040385 681 SLYTCLEAFLREEPLVPEDMWYCPQCKERRQASKKLDLWRLPEVLVIHLKRFSYSR--SMKHKLETFVNFPIHDFNLTKY 758 (827)
Q Consensus 681 sL~dCL~~F~~~E~L~~~d~~~C~~C~~~~~a~k~~~i~~lP~vLiihLkRF~~~~--~~~~Ki~~~V~fPl~~Ldl~~~ 758 (827)
++.+||+.|+.+|.|.+++.|.|..| +...|.|+..|+++|+||+|||+||.++. ....|++..|.|| +.|||++|
T Consensus 152 ~~~~~l~~~~~~e~l~~~~~~~~~~~-~~~~~~k~~~i~~lP~vL~i~l~Rf~~~~~~~~~~K~~~~v~fp-~~Ldl~~~ 229 (347)
T d1nbfa_ 152 NIFESFVDYVAVEQLDGDNKYDAGEH-GLQEAEKGVKFLTLPPVLHLQLMRFMYDPQTDQNIKINDRFEFP-EQLPLDEF 229 (347)
T ss_dssp BHHHHHHHHTCCEEECGGGCEECSTT-CEECEEEEEEEEECCSEEEEEEECEEEETTTTEEEECCCCCBCC-SEEECGGG
T ss_pred chhhhHHhhcchheeccccccccccC-cceeccEEEEEEecCChheEeeeeeeeccccCcccccCceEeee-eeeccccc
Confidence 46789999999999998887777755 56789999999999999999999999874 4567999999999 79999999
Q ss_pred cccCCCCccceEEEEEEEEeecCCCcceEEEEEEeCCCCCEEEEeCCcceecCcccccC---------------CCeEEE
Q 040385 759 VANKNSSRRQLYELYALTNHYGGMGSGHYTAHIKLLDENRWYNFDDSHISPINEDDVKS---------------AAAYVL 823 (827)
Q Consensus 759 ~~~~~~~~~~~Y~L~aVi~H~G~~~~GHY~a~~k~~~~~~W~~fnD~~V~~~~~~~v~~---------------~~aYiL 823 (827)
+..........|+|+|||+|.|+..+|||+||+|+..+++||.|||+.|+++++++|.. .+||||
T Consensus 230 ~~~~~~~~~~~Y~L~~vI~H~G~~~~GHY~~~~~~~~~~~W~~fnD~~V~~v~~~ev~~~~~g~~~~~~~~~~~~~aYiL 309 (347)
T d1nbfa_ 230 LQKTDPKDPANYILHAVLVHSGDNHGGHYVVYLNPKGDGKWCKFDDDVVSRCTKEEAIEHNYGGHDDDLSVRHCTNAYML 309 (347)
T ss_dssp BSSCCTTSCCEEEEEEEEEEEEETTEEEEEEEECTTSSSCCEEEETTEEEECCHHHHTGGGSCCCCSCCSTTTTEEEEEE
T ss_pred cccccccCccceeeEEEEEecCCCCCCEEEEeeecCCCCEEEEEECCceEECCHHHHHHhhcCCCccccccCCCCCEEEE
Confidence 98877667789999999999998899999999998778899999999999999999852 369999
Q ss_pred EeeC
Q 040385 824 FYRR 827 (827)
Q Consensus 824 fY~R 827 (827)
||+|
T Consensus 310 fY~r 313 (347)
T d1nbfa_ 310 VYIR 313 (347)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 9997
|
| >d2gfoa1 d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal hydrolase 8 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d2hd5a1 d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hydrolase 2, USP2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d2ayna1 d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hydrolase 14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1vjva_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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| >d1w6va1 d.324.1.1 (A:1-120) Ubiquitin carboxyl-terminal hydrolase 15 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1wjna_ d.15.1.1 (A:) Tubulin-folding protein TbcE {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d1yqba1 d.15.1.1 (A:15-98) Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1t0ya_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding cofactor B {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
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| >d1j8ca_ d.15.1.1 (A:) Ubiquitin-like N-terminal domain of PLIC-2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1euvb_ d.15.1.1 (B:) SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]} | Back information, alignment and structure |
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| >d2bwfa1 d.15.1.1 (A:2-74) DSK2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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| >d1z2ma2 d.15.1.1 (A:79-154) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1v6ea_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding cofactor B {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d1wxva1 d.15.1.1 (A:7-87) Bag-family molecular chaperone regulator-1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1wx8a1 d.15.1.1 (A:8-90) 4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d1v86a_ d.15.1.1 (A:) hypothetical D7wsu128e protein {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d1m94a_ d.15.1.1 (A:) Ubiquitin-like modifier protein hub1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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| >d1ogwa_ d.15.1.1 (A:) Ubiquitin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1bt0a_ d.15.1.1 (A:) Rub1 {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
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| >d2uyzb1 d.15.1.1 (B:20-96) SUMO-1 (smt3 homologue) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1v5oa_ d.15.1.1 (A:) 1700011n24rik protein {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d1wjua_ d.15.1.1 (A:) NEDD8 ultimate buster-1, NUB1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1z2ma1 d.15.1.1 (A:3-78) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1uh6a_ d.15.1.1 (A:) Ubiquitin-like protein 5, ubl5 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d1ttna1 d.15.1.1 (A:21-100) Dendritic cell-derived ubiquitin-like protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1wy8a1 d.15.1.1 (A:8-83) Ubiquitin-like PHD and RING finger domain-containing protein 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1zkha1 d.15.1.1 (A:1-86) Splicing factor 3 subunit 1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1wh3a_ d.15.1.1 (A:) 2'-5'-oligoadenylate synthetase-like protein, OASL {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d2zeqa1 d.15.1.1 (A:1-78) Ubiquitin-like domain of parkin {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d2faza1 d.15.1.1 (A:1-76) Ubiquitin-like PHD and RING finger domain-containing protein 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1h8ca_ d.15.1.2 (A:) Fas-associated factor 1, Faf1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1oqya4 d.15.1.1 (A:1-77) Ubiquitin-like domain of Rad23 homolog A (Hhr23a) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1v5ta_ d.15.1.1 (A:) 8430435i17rik protein {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d1we6a_ d.15.1.1 (A:) Splicing factor 3 subunit 1, C-terminal domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
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| >d1wgha_ d.15.1.1 (A:) Ubiquitin-like protein 3, Ubl3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d1uela_ d.15.1.1 (A:) Ubiquitin-like domain of Rad23 homolog B (Hhr23B) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1wm3a_ d.15.1.1 (A:) SUMO-2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d2c9wb1 d.15.1.1 (B:2-104) Elongin B {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1v2ya_ d.15.1.1 (A:) Ubiquitin-like protein 3300001g02rik {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d1wgga_ d.15.1.1 (A:) Ubiquitin carboxyl-terminal hydrolase 14 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d1wj4a_ d.15.1.2 (A:) Hypothetical protein KIAA0794 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d2cr5a1 d.15.1.2 (A:8-103) UBX domain-containing protein 6 (Reproduction 8) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d1wx9a1 d.15.1.1 (A:8-80) Large proline-rich protein BAT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1wxma1 d.15.1.5 (A:8-80) A-Raf proto-oncogene serine/threonine-protein kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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