Citrus Sinensis ID: 040440
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 355 | 2.2.26 [Sep-21-2011] | |||||||
| Q61371 | 824 | Intraflagellar transport | yes | no | 0.301 | 0.129 | 0.301 | 0.0005 |
| >sp|Q61371|IFT88_MOUSE Intraflagellar transport protein 88 homolog OS=Mus musculus GN=Ift88 PE=1 SV=2 | Back alignment and function desciption |
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Score = 45.8 bits (107), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 61/116 (52%), Gaps = 9/116 (7%)
Query: 146 PNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKG 205
P++IE ++ L I +Q +A+ +R ++P + +WQL+ A +G + A+
Sbjct: 617 PSNIEVIEWLGAYYIDTQFCEKAIQYFERASLIQPTQVKWQLMVASCFRRSGNYQKALDT 676
Query: 206 FEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVE------KRIEKAMERCKKEKKKS 255
++EI RK P VE LV +D L EV+ KR+EK M+ ++++ KS
Sbjct: 677 YKEIHRKFPENVECLRFLVRL--CTDIGLKEVQEYATKLKRLEK-MKEMREQRIKS 729
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Involved in primary cilium biogenesis. Mus musculus (taxid: 10090) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 355 | ||||||
| 255584563 | 341 | conserved hypothetical protein [Ricinus | 0.957 | 0.997 | 0.620 | 1e-112 | |
| 224138502 | 340 | predicted protein [Populus trichocarpa] | 0.940 | 0.982 | 0.620 | 1e-111 | |
| 297827245 | 334 | hypothetical protein ARALYDRAFT_482732 [ | 0.929 | 0.988 | 0.617 | 1e-108 | |
| 224088575 | 329 | predicted protein [Populus trichocarpa] | 0.912 | 0.984 | 0.606 | 1e-105 | |
| 18404409 | 333 | tetratricopeptide repeat domain-containi | 0.929 | 0.990 | 0.601 | 1e-101 | |
| 21617936 | 333 | unknown [Arabidopsis thaliana] | 0.929 | 0.990 | 0.598 | 1e-101 | |
| 225439850 | 351 | PREDICTED: uncharacterized protein LOC10 | 0.957 | 0.968 | 0.584 | 6e-93 | |
| 6729507 | 388 | putative protein [Arabidopsis thaliana] | 0.915 | 0.837 | 0.553 | 2e-89 | |
| 18409862 | 340 | tetratricopeptide repeat domain-containi | 0.915 | 0.955 | 0.553 | 4e-89 | |
| 297741536 | 314 | unnamed protein product [Vitis vinifera] | 0.873 | 0.987 | 0.578 | 6e-87 |
| >gi|255584563|ref|XP_002533008.1| conserved hypothetical protein [Ricinus communis] gi|223527219|gb|EEF29383.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
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Score = 410 bits (1054), Expect = e-112, Method: Compositional matrix adjust.
Identities = 221/356 (62%), Positives = 278/356 (78%), Gaps = 16/356 (4%)
Query: 1 MESLAKLHGGHQPLSLSFNHHRPSFPKSISFISLRTPPSSSPFKFSCIRASSSPASQQNP 60
M+S+AKLH HQPL+LSFN +RPSF K I + +RTP SSSPFK I+A +P QNP
Sbjct: 1 MDSIAKLHCTHQPLNLSFNPNRPSFTKPIFSLPIRTP-SSSPFKTLSIKAYKTP---QNP 56
Query: 61 KPSLLRTLTPLSSPLIKITSVTVAAAALLFMRLPFHSIKPAIAAPVAAAA-TVESTNEST 119
+PSLLRTL +P+++ T +T+ A A LF H KPAIAAPV A+ VE +S+
Sbjct: 57 EPSLLRTL----NPILRTTCITLTATAALFFFNNLHK-KPAIAAPVTASPPAVEPAEQSS 111
Query: 120 KDTTSAREDVSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELE 179
+VS++E+E+ +E LA NPNDI+ L++LMEVRIKS+KL++A++V+DRLIELE
Sbjct: 112 PS------NVSFQEQERALEDRLARNPNDIDTLRSLMEVRIKSRKLLQAIEVVDRLIELE 165
Query: 180 PNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEK 239
P+E EW LLK+Q+ SY+G+ E+A KGFEEIL KDPLRVEAYHGLVMA+ S +++V K
Sbjct: 166 PDEDEWPLLKSQIFSYSGDFESARKGFEEILEKDPLRVEAYHGLVMAHAESGDSVDKVLK 225
Query: 240 RIEKAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQG 299
RIE AM++C+KEKKKSDLRDFKLLIAQI+VME K+ +AL VYEELVKEEPRDFRPYLCQG
Sbjct: 226 RIESAMDKCRKEKKKSDLRDFKLLIAQIRVMEEKYVDALNVYEELVKEEPRDFRPYLCQG 285
Query: 300 IIYTLLRKKDEAEKQFEKFRRLVPRNHPYREYFVDNMVATKIFGEKVDRESMASKS 355
IIYTLLRKK+EAEK+FE+FR+LVP+NHPYRE+F+DNM AT F EKV RE + S
Sbjct: 286 IIYTLLRKKEEAEKKFEQFRKLVPKNHPYREFFLDNMFATTFFSEKVQREGAGASS 341
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Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224138502|ref|XP_002322830.1| predicted protein [Populus trichocarpa] gi|222867460|gb|EEF04591.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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Score = 408 bits (1048), Expect = e-111, Method: Compositional matrix adjust.
Identities = 219/353 (62%), Positives = 269/353 (76%), Gaps = 19/353 (5%)
Query: 1 MESLAKLHGGHQPLSLSFNHHRPSFPKSISFISLRTPPSSSPFKFSCIRASSSPASQQNP 60
MES+AKLH HQP +LS N HRPSFPK I ISL S ++
Sbjct: 1 MESVAKLHCRHQPFNLSLNPHRPSFPKPI--ISLSFKTPPP----SSSSPFKLSSTSIRA 54
Query: 61 KPSLLRTLTPLSSPL---IKITSVTV-AAAALLFMRLPFHSIKPAIAAPVAAAATVESTN 116
S +TPL+ L IKITS+T+ AAAAL F RL +IKPAIA+P+ A++TV+ T
Sbjct: 55 SSSSSSRITPLNKNLGTIIKITSITLTAAAALFFTRL---NIKPAIASPLTASSTVDPTE 111
Query: 117 ESTKDTTSAREDVSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLI 176
ES+K E+VSYEE+E+ ++ +L+ NPNDIEAL++LMEVRIKS+KLVEA++V+DRLI
Sbjct: 112 ESSK------ENVSYEEQERALQDYLSQNPNDIEALRSLMEVRIKSKKLVEAIEVVDRLI 165
Query: 177 ELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNE 236
ELEPNE EW LLK+Q+ +Y+G+ E+A GFE IL+KDPLRVEAYHGLVMA S L
Sbjct: 166 ELEPNEDEWPLLKSQIYTYSGDFESAKDGFEAILKKDPLRVEAYHGLVMANSESGGSLEV 225
Query: 237 VEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYL 296
V KRIE AM++CKKEKK SDLRDFKLL+AQ++VME K+ +AL+VYEELVKEEPRDFRPYL
Sbjct: 226 VLKRIESAMDKCKKEKKTSDLRDFKLLVAQVRVMEEKYLDALKVYEELVKEEPRDFRPYL 285
Query: 297 CQGIIYTLLRKKDEAEKQFEKFRRLVPRNHPYREYFVDNMVATKIFGEKVDRE 349
CQGIIYTLLRKKDEAEK+FE+F++LVP+NHPYREY VDNM ATK F +KV+RE
Sbjct: 286 CQGIIYTLLRKKDEAEKKFEQFKKLVPKNHPYREYLVDNMFATKFFSDKVERE 338
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Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297827245|ref|XP_002881505.1| hypothetical protein ARALYDRAFT_482732 [Arabidopsis lyrata subsp. lyrata] gi|297327344|gb|EFH57764.1| hypothetical protein ARALYDRAFT_482732 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
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Score = 397 bits (1021), Expect = e-108, Method: Compositional matrix adjust.
Identities = 216/350 (61%), Positives = 262/350 (74%), Gaps = 20/350 (5%)
Query: 1 MESLAKLHGGHQPLSLSFNHHRPSFPKSISFISLRT-PPSSSPFKFSCIRASSSPASQQN 59
MESL KLH QP LSF H SFPK+ S SLR+ P S+S K I+ASSS + Q+
Sbjct: 1 MESLGKLHLHQQPNHLSFTHFSSSFPKTPSSFSLRSLPKSTSSLKCVSIKASSSKS--QD 58
Query: 60 PKPSLLRTLTPLSSPLIKITSVTVAAAALLFMRLPFHSIKPAIAAPVAAAATVESTNEST 119
+ S L++ T VT AAA LF+ PAIAAPVAA +VES +S
Sbjct: 59 SRLSFLKS-----------TCVTFTAAAALFLVNLQLKPSPAIAAPVAATPSVESLKQSN 107
Query: 120 KDTTSAREDVSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELE 179
DVS EE+E+ +E HLA++P D+EAL++LMEVRIKS+KL+EA+++IDRLIELE
Sbjct: 108 NG------DVSLEEEERSLEDHLASHPEDVEALRSLMEVRIKSRKLIEAIELIDRLIELE 161
Query: 180 PNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEK 239
P E EW +LKA + SY+G+ E+A GFEEIL KDPLRV+AYHGLVMAY S LN VE+
Sbjct: 162 PEEKEWPILKANIFSYSGDLESAKTGFEEILVKDPLRVDAYHGLVMAYSDSGADLNAVEE 221
Query: 240 RIEKAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQG 299
RIE+AM RCKKEK + DLRDFKLL+AQI+V+E KH+EAL++YEELVKEEPRDFRPYLCQG
Sbjct: 222 RIEEAMVRCKKEKNRKDLRDFKLLVAQIRVIEGKHNEALKLYEELVKEEPRDFRPYLCQG 281
Query: 300 IIYTLLRKKDEAEKQFEKFRRLVPRNHPYREYFVDNMVATKIFGEKVDRE 349
IIYT+L+K+DEAEKQFEKFRRLVP+NHPYREYF+DNMVATK+F EK RE
Sbjct: 282 IIYTVLKKQDEAEKQFEKFRRLVPKNHPYREYFMDNMVATKLFAEKAQRE 331
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Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224088575|ref|XP_002308480.1| predicted protein [Populus trichocarpa] gi|222854456|gb|EEE92003.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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Score = 387 bits (995), Expect = e-105, Method: Compositional matrix adjust.
Identities = 214/353 (60%), Positives = 266/353 (75%), Gaps = 29/353 (8%)
Query: 1 MESLAKLHGGHQPLSLSFNHHRPSFPKSISFISLRTPP-SSSPFKFSCIRASSSPASQQN 59
MES+AK QPL+LS N HRPSFP I ++ +TPP SSSPFK S +SS
Sbjct: 1 MESIAK-----QPLNLSLNPHRPSFPNPIVSLTFKTPPPSSSPFKLSTSIRASS------ 49
Query: 60 PKPSLLRTLTPLSSPLIKITSVTV----AAAALLFMRLPFHSIKPAIAAPVAAAATVEST 115
+TPL+ L I T AAA L F R F+S KPAIA+PVAA++ ST
Sbjct: 50 -----SSRITPLNQSLTTIIKTTSITLTAAAVLFFTR--FNS-KPAIASPVAASS---ST 98
Query: 116 NESTKDTTSAREDVSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRL 175
+ TK+ S++E+VS+EE+E+ ++ HLA NP+D+EAL++LMEVRIKS+KL EA++V+DRL
Sbjct: 99 ADPTKE--SSKENVSFEEQERALQDHLAQNPSDVEALRSLMEVRIKSKKLQEAIEVVDRL 156
Query: 176 IELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLN 235
IELEPNE EW LLK+Q+ +Y+G+ E+A GFE +L+KDPLRVEAYHGLVMA S L
Sbjct: 157 IELEPNEDEWPLLKSQIYTYSGDFESAKDGFEAVLQKDPLRVEAYHGLVMANSESGGSLE 216
Query: 236 EVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPY 295
V KRIE AM +CKKEKK SDLRDFKLLIAQ++VME K+ +AL+VYEELVKEEPRDFRPY
Sbjct: 217 VVLKRIESAMNKCKKEKKNSDLRDFKLLIAQVRVMEEKYFDALKVYEELVKEEPRDFRPY 276
Query: 296 LCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHPYREYFVDNMVATKIFGEKVDR 348
LCQG+IYTLLRKKDEAEK+FE+F++LVP+NHPYREY V+NM AT F EKV+R
Sbjct: 277 LCQGMIYTLLRKKDEAEKKFEQFKKLVPKNHPYREYLVENMFATNFFSEKVER 329
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Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|18404409|ref|NP_565860.1| tetratricopeptide repeat domain-containing protein [Arabidopsis thaliana] gi|4056493|gb|AAC98059.1| chloroplast lumen common protein family [Arabidopsis thaliana] gi|114050659|gb|ABI49479.1| At2g37400 [Arabidopsis thaliana] gi|330254299|gb|AEC09393.1| tetratricopeptide repeat domain-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
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Score = 375 bits (962), Expect = e-101, Method: Compositional matrix adjust.
Identities = 210/349 (60%), Positives = 261/349 (74%), Gaps = 19/349 (5%)
Query: 1 MESLAKLHGGHQPLSLSFNHHRPSFPKSISFISLRTPPSSSPFKFSCIRASSSPASQQNP 60
MESL KL QP LSF H SFPK S SLR+ P S+ F CI +S + Q+
Sbjct: 1 MESLGKLQLHQQPNHLSFTHFSSSFPKKPSSFSLRSLPRSTS-SFKCISIKASSSKSQDS 59
Query: 61 KPSLLRTLTPLSSPLIKITSVTVAAAALLFMRLPFHSIKPAIAAPVAAAATVESTNESTK 120
K S+L++ T V+ AAA LF+ PAIAAPVAA +ES +S
Sbjct: 60 KLSILKS-----------TCVSFTAAAALFLVNLQLKPSPAIAAPVAATPLMESLKQSNG 108
Query: 121 DTTSAREDVSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEP 180
+ VS+EE+E+ +E++LA++P+D+EAL++LMEVRIKS+KL+EA+++IDRLIELEP
Sbjct: 109 N-------VSFEEEERSLEEYLASHPDDVEALRSLMEVRIKSRKLLEAIELIDRLIELEP 161
Query: 181 NEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKR 240
E EW +LKA + SY+G+ E+A GFEEIL KDPLRVEAYHGLVMAY S LN VEKR
Sbjct: 162 EEKEWPMLKANIFSYSGDLESAKTGFEEILVKDPLRVEAYHGLVMAYSDSGDDLNAVEKR 221
Query: 241 IEKAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGI 300
IE+AM RCKKEK + DLRDFKLL+AQI+V+E KH+EAL++YEELVKEEPRDFRPYLCQGI
Sbjct: 222 IEEAMVRCKKEKNRKDLRDFKLLVAQIRVIEGKHNEALKLYEELVKEEPRDFRPYLCQGI 281
Query: 301 IYTLLRKKDEAEKQFEKFRRLVPRNHPYREYFVDNMVATKIFGEKVDRE 349
IYT+L+K++EAEKQFEKFRRLVP+NHPYREYF+DNMVA+K+F EKV RE
Sbjct: 282 IYTVLKKENEAEKQFEKFRRLVPKNHPYREYFMDNMVASKLFAEKVQRE 330
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Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|21617936|gb|AAM66986.1| unknown [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 373 bits (958), Expect = e-101, Method: Compositional matrix adjust.
Identities = 209/349 (59%), Positives = 261/349 (74%), Gaps = 19/349 (5%)
Query: 1 MESLAKLHGGHQPLSLSFNHHRPSFPKSISFISLRTPPSSSPFKFSCIRASSSPASQQNP 60
MESL KL QP LSF H SFPK S SLR+ P S+ F CI +S + Q+
Sbjct: 1 MESLGKLQLHQQPNHLSFTHFSSSFPKKPSSFSLRSLPRSTS-SFKCISIKASSSKSQDS 59
Query: 61 KPSLLRTLTPLSSPLIKITSVTVAAAALLFMRLPFHSIKPAIAAPVAAAATVESTNESTK 120
K S+L++ T V+ AAA LF+ PAIAAPVAA +ES +S
Sbjct: 60 KLSILKS-----------TCVSFTAAAALFLVNLQLKPSPAIAAPVAATPLMESLKQSNG 108
Query: 121 DTTSAREDVSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEP 180
+ VS+EE+E+ +E++LA++P+D+EAL++LMEVRIKS+KL+EA+++IDRLIELEP
Sbjct: 109 N-------VSFEEEERSLEEYLASHPDDVEALRSLMEVRIKSRKLLEAIELIDRLIELEP 161
Query: 181 NEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKR 240
E EW +LKA + SY+G+ E+A GFEEIL KDPLRVEAYHGLVMAY S LN VE+R
Sbjct: 162 EEKEWPMLKANIFSYSGDLESAKTGFEEILVKDPLRVEAYHGLVMAYSDSGDDLNAVEQR 221
Query: 241 IEKAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGI 300
IE+AM RCKKEK + DLRDFKLL+AQI+V+E KH+EAL++YEELVKEEPRDFRPYLCQGI
Sbjct: 222 IEEAMVRCKKEKNRKDLRDFKLLVAQIRVIEGKHNEALKLYEELVKEEPRDFRPYLCQGI 281
Query: 301 IYTLLRKKDEAEKQFEKFRRLVPRNHPYREYFVDNMVATKIFGEKVDRE 349
IYT+L+K++EAEKQFEKFRRLVP+NHPYREYF+DNMVA+K+F EKV RE
Sbjct: 282 IYTVLKKENEAEKQFEKFRRLVPKNHPYREYFMDNMVASKLFAEKVQRE 330
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Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225439850|ref|XP_002277967.1| PREDICTED: uncharacterized protein LOC100267054 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 347 bits (889), Expect = 6e-93, Method: Compositional matrix adjust.
Identities = 214/366 (58%), Positives = 265/366 (72%), Gaps = 26/366 (7%)
Query: 1 MESLAKLHGGHQPLSLSFNHHRPSFPKSISFISLRTPPSSSPFKFSCIRASSSPA----- 55
MESLAKLH QPL LS HRPSF + IS S RT SSS K +RASSSP+
Sbjct: 1 MESLAKLHQRQQPLHLSLYDHRPSFSRPISSFSFRTSSSSSTSKSLFVRASSSPSSFSRH 60
Query: 56 ----SQQNPKPSLLRTLTPLSSPLIKITSVTVAAAALLFMRLPFHSIKPAIAAPVAAAAT 111
QNPK TL P K + + +AAAA+ F R ++KP IAAP AAT
Sbjct: 61 SPTQDHQNPKSPFFETLLP---HFFKASCIAIAAAAVFFARF---NVKPVIAAP---AAT 111
Query: 112 VESTNESTKDTTSAREDVSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDV 171
VE +ST D+ VS EEKE+ +E+++ ++P+D+E L++LMEV+IK++KL EAVDV
Sbjct: 112 VEPFKQSTMDS------VSDEEKERTVEEYVESHPDDVEGLKSLMEVKIKNRKLQEAVDV 165
Query: 172 IDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSD 231
I+RLI+LEP++ EW LLKA + SY+GESE A GFEEIL +PL VEAYHGLVMA SD
Sbjct: 166 IERLIQLEPDDKEWPLLKAHLYSYSGESELAKLGFEEILSANPLTVEAYHGLVMAVSQSD 225
Query: 232 --KKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEP 289
+LN+V KRIE AMERCKKEKKK DLRDFKLL+AQI+V+E K+++AL+VY+ELVKEEP
Sbjct: 226 SGDELNQVLKRIEAAMERCKKEKKKEDLRDFKLLVAQIRVIEGKYNDALKVYQELVKEEP 285
Query: 290 RDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHPYREYFVDNMVATKIFGEKVDRE 349
RDFRPYLCQGIIYTLLRKKDEAEKQF+K+RRLVP+ HPY YF DNM+AT++F + + +
Sbjct: 286 RDFRPYLCQGIIYTLLRKKDEAEKQFQKYRRLVPKGHPYARYFDDNMIATRVFSQMAENQ 345
Query: 350 SMASKS 355
SKS
Sbjct: 346 RSGSKS 351
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|6729507|emb|CAB67663.1| putative protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 335 bits (859), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 196/354 (55%), Positives = 253/354 (71%), Gaps = 29/354 (8%)
Query: 1 MESLAKLHGGHQPLSLSFNHHRPS-FPKSISFISLRTPPSSSPFKFSCIRASSSPASQQN 59
MESL KL HQP LSF H S FPK++ F S P SS +S + QN
Sbjct: 49 MESLGKLQLHHQPFHLSFTHTSSSTFPKNL-FKSSIQPISS----LKSASIKASSSKFQN 103
Query: 60 PKPSLLRTLTPL--SSP--LIKITSVTVAAAALLFMRLPFHSIKPAIAAPVAAAATVEST 115
++TPL S+P L K T +T+ AA L + H PAIAAP+A +VES
Sbjct: 104 -------SITPLPKSTPFRLFKSTCITLTTAAAL-LLANLHLKSPAIAAPIAPPPSVES- 154
Query: 116 NESTKDTTSAREDVSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRL 175
+E+V+ EE+E+ +++HL +P+D++AL++LMEV+IKS+KL EAV+VIDRL
Sbjct: 155 ----------KENVTLEEEERALDEHLITHPSDVDALRSLMEVKIKSRKLTEAVEVIDRL 204
Query: 176 IELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLN 235
I+LEP E EW +LKA + +Y+G+ + A GFEEIL KDPLRVEAYHGL+MAY + L
Sbjct: 205 IKLEPEEKEWPVLKANIFTYSGDLDLAKTGFEEILAKDPLRVEAYHGLLMAYSDAGLDLK 264
Query: 236 EVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPY 295
EVE RIE+AM +CKKE ++D RDFKLL+AQI+V+E KHSEAL++Y+ELVKEEPRDFRPY
Sbjct: 265 EVESRIEEAMLKCKKENNQNDFRDFKLLVAQIRVIEGKHSEALKLYQELVKEEPRDFRPY 324
Query: 296 LCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHPYREYFVDNMVATKIFGEKVDRE 349
LCQGIIYTLL+KKD+AE+QF+ FR+LVP+NHPYREYF+DNM+ATK+F EK RE
Sbjct: 325 LCQGIIYTLLKKKDKAEEQFDNFRKLVPKNHPYREYFMDNMIATKLFSEKAQRE 378
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|18409862|ref|NP_566986.1| tetratricopeptide repeat domain-containing protein [Arabidopsis thaliana] gi|20466552|gb|AAM20593.1| putative protein [Arabidopsis thaliana] gi|23198132|gb|AAN15593.1| putative protein [Arabidopsis thaliana] gi|332645587|gb|AEE79108.1| tetratricopeptide repeat domain-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 334 bits (856), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 196/354 (55%), Positives = 253/354 (71%), Gaps = 29/354 (8%)
Query: 1 MESLAKLHGGHQPLSLSFNHHRPS-FPKSISFISLRTPPSSSPFKFSCIRASSSPASQQN 59
MESL KL HQP LSF H S FPK++ F S P SS +S + QN
Sbjct: 1 MESLGKLQLHHQPFHLSFTHTSSSTFPKNL-FKSSIQPISS----LKSASIKASSSKFQN 55
Query: 60 PKPSLLRTLTPL--SSP--LIKITSVTVAAAALLFMRLPFHSIKPAIAAPVAAAATVEST 115
++TPL S+P L K T +T+ AA L + H PAIAAP+A +VES
Sbjct: 56 -------SITPLPKSTPFRLFKSTCITLTTAAAL-LLANLHLKSPAIAAPIAPPPSVES- 106
Query: 116 NESTKDTTSAREDVSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRL 175
+E+V+ EE+E+ +++HL +P+D++AL++LMEV+IKS+KL EAV+VIDRL
Sbjct: 107 ----------KENVTLEEEERALDEHLITHPSDVDALRSLMEVKIKSRKLTEAVEVIDRL 156
Query: 176 IELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLN 235
I+LEP E EW +LKA + +Y+G+ + A GFEEIL KDPLRVEAYHGL+MAY + L
Sbjct: 157 IKLEPEEKEWPVLKANIFTYSGDLDLAKTGFEEILAKDPLRVEAYHGLLMAYSDAGLDLK 216
Query: 236 EVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPY 295
EVE RIE+AM +CKKE ++D RDFKLL+AQI+V+E KHSEAL++Y+ELVKEEPRDFRPY
Sbjct: 217 EVESRIEEAMLKCKKENNQNDFRDFKLLVAQIRVIEGKHSEALKLYQELVKEEPRDFRPY 276
Query: 296 LCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHPYREYFVDNMVATKIFGEKVDRE 349
LCQGIIYTLL+KKD+AE+QF+ FR+LVP+NHPYREYF+DNM+ATK+F EK RE
Sbjct: 277 LCQGIIYTLLKKKDKAEEQFDNFRKLVPKNHPYREYFMDNMIATKLFSEKAQRE 330
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Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297741536|emb|CBI32668.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 327 bits (838), Expect = 6e-87, Method: Compositional matrix adjust.
Identities = 202/349 (57%), Positives = 248/349 (71%), Gaps = 39/349 (11%)
Query: 1 MESLAKLHGGHQPLSLSFNHHRPSFPKSISFISLRTPPSSSPFKFSCIRASSSPASQQNP 60
MESLAKLH QPL LS HRPSF + IS S RT SSS K +RASSS
Sbjct: 1 MESLAKLHQRQQPLHLSLYDHRPSFSRPISSFSFRTSSSSSTSKSLFVRASSS------- 53
Query: 61 KPSLLRTLTPLSSPLIKITSVTVAAAALLFMRLPFHSIKPAIAAPVAAAATVESTNESTK 120
S AAA+ F R ++KP IAAP AATVE +ST
Sbjct: 54 ------------------PSSFSPAAAVFFARF---NVKPVIAAP---AATVEPFKQSTM 89
Query: 121 DTTSAREDVSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEP 180
D+ VS EEKE+ +E+++ ++P+D+E L++LMEV+IK++KL EAVDVI+RLI+LEP
Sbjct: 90 DS------VSDEEKERTVEEYVESHPDDVEGLKSLMEVKIKNRKLQEAVDVIERLIQLEP 143
Query: 181 NEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSD--KKLNEVE 238
++ EW LLKA + SY+GESE A GFEEIL +PL VEAYHGLVMA SD +LN+V
Sbjct: 144 DDKEWPLLKAHLYSYSGESELAKLGFEEILSANPLTVEAYHGLVMAVSQSDSGDELNQVL 203
Query: 239 KRIEKAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQ 298
KRIE AMERCKKEKKK DLRDFKLL+AQI+V+E K+++AL+VY+ELVKEEPRDFRPYLCQ
Sbjct: 204 KRIEAAMERCKKEKKKEDLRDFKLLVAQIRVIEGKYNDALKVYQELVKEEPRDFRPYLCQ 263
Query: 299 GIIYTLLRKKDEAEKQFEKFRRLVPRNHPYREYFVDNMVATKIFGEKVD 347
GIIYTLLRKKDEAEKQF+K+RRLVP+ HPY YF DNM+AT+ +K++
Sbjct: 264 GIIYTLLRKKDEAEKQFQKYRRLVPKGHPYARYFDDNMIATRKIEKKIE 312
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 355 | ||||||
| TAIR|locus:2049741 | 333 | AT2G37400 "AT2G37400" [Arabido | 0.904 | 0.963 | 0.533 | 1.2e-81 | |
| TAIR|locus:2084001 | 340 | AT3G53560 "AT3G53560" [Arabido | 0.901 | 0.941 | 0.5 | 5.5e-77 | |
| TAIR|locus:2181848 | 326 | AT5G02590 "AT5G02590" [Arabido | 0.749 | 0.815 | 0.509 | 5.1e-67 | |
| TAIR|locus:2074969 | 334 | AT3G09490 "AT3G09490" [Arabido | 0.552 | 0.586 | 0.505 | 1.1e-48 | |
| TAIR|locus:2095037 | 316 | AT3G18420 [Arabidopsis thalian | 0.605 | 0.680 | 0.359 | 2.9e-32 | |
| TAIR|locus:2122462 | 341 | AT4G39470 [Arabidopsis thalian | 0.580 | 0.604 | 0.331 | 4.2e-31 | |
| UNIPROTKB|Q74DZ8 | 266 | GSU1166 "TPR domain protein" [ | 0.563 | 0.751 | 0.260 | 0.00033 | |
| TIGR_CMR|GSU_1166 | 266 | GSU_1166 "TPR domain protein" | 0.563 | 0.751 | 0.260 | 0.00033 |
| TAIR|locus:2049741 AT2G37400 "AT2G37400" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 819 (293.4 bits), Expect = 1.2e-81, P = 1.2e-81
Identities = 176/330 (53%), Positives = 223/330 (67%)
Query: 20 HHRPSFPKSISFISLRTPPSSSPFKFSCIRASSSPASQQNPKXXXXXXXXXXXXXXIKIT 79
H +P+ S + S P S F + S+S + K +K T
Sbjct: 10 HQQPNH-LSFTHFSSSFPKKPSSFSLRSLPRSTSSFKCISIKASSSKSQDSKLSI-LKST 67
Query: 80 SVTVAAAALLFMRLPFHSIKXXXXXXXXXXXTVESTNESTKDTTSAREDVSYEEKEKEIE 139
V+ AAA LF L +K T ES K + +VS+EE+E+ +E
Sbjct: 68 CVSFTAAAALF--LVNLQLKPSPAIAAPVAAT--PLMESLKQSNG---NVSFEEEERSLE 120
Query: 140 QHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGES 199
++LA++P+D+EAL++LMEVRIKS+KL+EA+++IDRLIELEP E EW +LKA + SY+G+
Sbjct: 121 EYLASHPDDVEALRSLMEVRIKSRKLLEAIELIDRLIELEPEEKEWPMLKANIFSYSGDL 180
Query: 200 EAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIXXXXXXXXXXXXXSDLRD 259
E+A GFEEIL KDPLRVEAYHGLVMAY S LN VEKRI DLRD
Sbjct: 181 ESAKTGFEEILVKDPLRVEAYHGLVMAYSDSGDDLNAVEKRIEEAMVRCKKEKNRKDLRD 240
Query: 260 FKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFR 319
FKLL+AQI+V+E KH+EAL++YEELVKEEPRDFRPYLCQGIIYT+L+K++EAEKQFEKFR
Sbjct: 241 FKLLVAQIRVIEGKHNEALKLYEELVKEEPRDFRPYLCQGIIYTVLKKENEAEKQFEKFR 300
Query: 320 RLVPRNHPYREYFVDNMVATKIFGEKVDRE 349
RLVP+NHPYREYF+DNMVA+K+F EKV RE
Sbjct: 301 RLVPKNHPYREYFMDNMVASKLFAEKVQRE 330
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| TAIR|locus:2084001 AT3G53560 "AT3G53560" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 775 (277.9 bits), Expect = 5.5e-77, P = 5.5e-77
Identities = 170/340 (50%), Positives = 223/340 (65%)
Query: 20 HHRPSFPKSISFISLRTPPS----SSPFKFSCIRASSSPASQQNPKXXXXXXXXXXXXXX 75
HH+P F S + S T P SS S ++++S AS +
Sbjct: 10 HHQP-FHLSFTHTSSSTFPKNLFKSSIQPISSLKSASIKASSSKFQNSITPLPKSTPFRL 68
Query: 76 IKITSVTVA-AAALLFMRLPFHSIKXXXXXXXXXXXTVESTNESTKDTTSAREDVSYEEK 134
K T +T+ AAALL L H +VES +E+V+ EE+
Sbjct: 69 FKSTCITLTTAAALLLANL--HLKSPAIAAPIAPPPSVES-----------KENVTLEEE 115
Query: 135 EKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQS 194
E+ +++HL +P+D++AL++LMEV+IKS+KL EAV+VIDRLI+LEP E EW +LKA + +
Sbjct: 116 ERALDEHLITHPSDVDALRSLMEVKIKSRKLTEAVEVIDRLIKLEPEEKEWPVLKANIFT 175
Query: 195 YAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIXXXXXXXXXXXXX 254
Y+G+ + A GFEEIL KDPLRVEAYHGL+MAY + L EVE RI
Sbjct: 176 YSGDLDLAKTGFEEILAKDPLRVEAYHGLLMAYSDAGLDLKEVESRIEEAMLKCKKENNQ 235
Query: 255 SDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQ 314
+D RDFKLL+AQI+V+E KHSEAL++Y+ELVKEEPRDFRPYLCQGIIYTLL+KKD+AE+Q
Sbjct: 236 NDFRDFKLLVAQIRVIEGKHSEALKLYQELVKEEPRDFRPYLCQGIIYTLLKKKDKAEEQ 295
Query: 315 FEKFRRLVPRNHPYREYFVDNMVATKIFGEKVDRESMASK 354
F+ FR+LVP+NHPYREYF+DNM+ATK+F EK RE MA +
Sbjct: 296 FDNFRKLVPKNHPYREYFMDNMIATKLFSEKAQRE-MAEE 334
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| TAIR|locus:2181848 AT5G02590 "AT5G02590" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 681 (244.8 bits), Expect = 5.1e-67, P = 5.1e-67
Identities = 138/271 (50%), Positives = 186/271 (68%)
Query: 76 IKITSVTVAAAALLFMRLPFHSIKXXXXXXXXXXXTVESTN-ESTKDTTSAREDVSYEEK 134
+K T VT+ AA L S K ST + T D S+R EE+
Sbjct: 57 LKTTCVTLTTAAALLSASLHLSTKPVTAATLVSPPPPPSTAADLTSDQISSRP--KEEEE 114
Query: 135 EKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQS 194
E +E+HL NPND+EALQ+LM+++ +++ + A+++++RLIE++P E EW++LKAQVQ+
Sbjct: 115 EAALEKHLTKNPNDVEALQSLMKIKFQTKNIDHALEILNRLIEIQPEEQEWRILKAQVQT 174
Query: 195 YAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIXXXXXXXXXXXXX 254
Y G+ ++A KGFEE+L KDP RVEAYHGLVMAY S+ KL+E+E RI
Sbjct: 175 YGGDFDSATKGFEEVLSKDPFRVEAYHGLVMAYSESESKLSEIESRINEAIEKCKKENK- 233
Query: 255 SDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQ 314
D RDF LLIAQI+V++ EALRVY+ELVK+EP+DFRPYLCQG+IYTL++KKDEAEKQ
Sbjct: 234 KDFRDFMLLIAQIRVIKGNPIEALRVYQELVKDEPKDFRPYLCQGLIYTLMKKKDEAEKQ 293
Query: 315 FEKFRRLVPRNHPYREYFVDNMVAT-KIFGE 344
F +FRRLVP NHPY+EY N++ T K+F +
Sbjct: 294 FAEFRRLVPENHPYKEYLDANVLNTNKLFAK 324
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| TAIR|locus:2074969 AT3G09490 "AT3G09490" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 508 (183.9 bits), Expect = 1.1e-48, P = 1.1e-48
Identities = 99/196 (50%), Positives = 133/196 (67%)
Query: 135 EKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQS 194
E +E+HL ND+ AL L E++ KS K +A+ +DRLIE+EP E +W +KA++ S
Sbjct: 99 ETTLEKHLETQSNDVNALSLLTEIKFKSDKHEQAIVFLDRLIEIEPYERKWPAMKARILS 158
Query: 195 YAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIXXXXXXXXXXXXX 254
Y G+SE+AI+ FEEIL KDP+RV+AYH LVM Y S KL E+EKRI
Sbjct: 159 YHGKSESAIEAFEEILEKDPIRVDAYHYLVMEYYNSKPKLTEIEKRINKVIRRCKKEKKT 218
Query: 255 SDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQ 314
++ F++LIAQI+ +E K EA+R+ EELVKE+P DF YL QG++YTL+ K +EA KQ
Sbjct: 219 KEILGFRMLIAQIRFIEGKSVEAIRICEELVKEDPNDFTIYLFQGVVYTLMNKGEEAAKQ 278
Query: 315 FEKFRRLVPRNHPYRE 330
FE R++PRNHP RE
Sbjct: 279 FEHVARVIPRNHPSRE 294
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| TAIR|locus:2095037 AT3G18420 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 353 (129.3 bits), Expect = 2.9e-32, P = 2.9e-32
Identities = 79/220 (35%), Positives = 126/220 (57%)
Query: 127 EDVSYEEKEKEI---EQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEF 183
E+V EEK EI + L + P +E L++L++ +++ + EA+ +++RL+ +P E
Sbjct: 94 EEVK-EEKLSEITPLSELLDSTPEAVETLRSLLQQKLEKGEDEEALKLLERLVAAQPEET 152
Query: 184 EWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIXX 243
EW+ L A++ G E A + FEEIL+++PL EA + D S + N V +R+
Sbjct: 153 EWKFLMARLLGEMGRPENARQMFEEILQRNPLSFEALFENALLMDRSGEG-NAVLQRLED 211
Query: 244 XXXXXXXXXXXSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYT 303
+ RD +L+IAQI ++ EAL+ YE+L KE+P+DFRPY C+G+IY+
Sbjct: 212 ALAVAEAEYLVKEARDVRLIIAQIHFLQKNVDEALKSYEQLTKEDPKDFRPYFCRGMIYS 271
Query: 304 LLRKKDEAEKQFEKFRRLVPRNHPYREYFVDNMVATKIFG 343
LL K EA++QF K+R L P+ Y + K+FG
Sbjct: 272 LLDKNVEAKEQFAKYRELSPKKFEVEGYLRTPLSKMKLFG 311
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| TAIR|locus:2122462 AT4G39470 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 342 (125.4 bits), Expect = 4.2e-31, P = 4.2e-31
Identities = 69/208 (33%), Positives = 123/208 (59%)
Query: 133 EKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQV 192
E EK E+ L P ++EA++ ++ +++ K +AV +++L++LEP+E EW+LL+A
Sbjct: 117 EDEKMFEKLLENEPENMEAMKAVVYKKMRRGKNEDAVKYVEKLMKLEPHEVEWKLLEALC 176
Query: 193 QSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIXXXXXXXXXXX 252
GE A + +++IL++ PL + A HGL M + V +
Sbjct: 177 YETMGELSKAKRLYKDILKEQPLLIRALHGLAMVMHKTHD--TSVFDMLIEAMEVARQGN 234
Query: 253 XXSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAE 312
++ R+ ++LI Q+ ++E + E L++++++V + PRDFRPYLCQGI+Y+L+ KK+EA
Sbjct: 235 RVTEERNIQVLIGQMHIVEGQFEEGLKIFQQMVNDNPRDFRPYLCQGIVYSLMDKKEEAA 294
Query: 313 KQFEKFRRLVPRNHPYREYFVDNMVATK 340
+QFE + LVP P + + D +A +
Sbjct: 295 QQFEIYWSLVPGEFPQKGFLDDVALAAQ 322
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| UNIPROTKB|Q74DZ8 GSU1166 "TPR domain protein" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
|---|
Score = 114 (45.2 bits), Expect = 0.00033, P = 0.00033
Identities = 56/215 (26%), Positives = 88/215 (40%)
Query: 127 EDVSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQ 186
E+ E ++ E+ LA P D++ L ++ ++ + A+ R +EL+P +
Sbjct: 51 EEGKLAEARQQYEKGLALAPGDVDGQIALGDICLELAEHEAALAAYRRAVELDPRNADGY 110
Query: 187 LLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIXXXXX 246
+ V + E+ AI+ FE+ L DP V AY+GL A+ G L E EK I
Sbjct: 111 VNIGLVYNSLEETSKAIEAFEKALEIDPANVFAYNGLGDAWYG----LGEREKAIDAFRK 166
Query: 247 XXXXXXXXSDLRDFKL--LIAQIKVMESKHSEALRVYEELVKEEPRDFR-PYLCQGIIYT 303
+ F L L + E E L E V+ +P DF YL G +Y
Sbjct: 167 GIELDPTDAAAH-FNLGELYYDLGETEEAEKECL----EAVRLDP-DFTMSYLTLGSLYM 220
Query: 304 LLRKKDEAEKQFEKFRRLVPRNHPYREYFVDNMVA 338
+ +A + E + L P VD + A
Sbjct: 221 DDERVKDAIRYLELY--LQKEKSPQARETVDEVKA 253
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| TIGR_CMR|GSU_1166 GSU_1166 "TPR domain protein" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
|---|
Score = 114 (45.2 bits), Expect = 0.00033, P = 0.00033
Identities = 56/215 (26%), Positives = 88/215 (40%)
Query: 127 EDVSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQ 186
E+ E ++ E+ LA P D++ L ++ ++ + A+ R +EL+P +
Sbjct: 51 EEGKLAEARQQYEKGLALAPGDVDGQIALGDICLELAEHEAALAAYRRAVELDPRNADGY 110
Query: 187 LLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIXXXXX 246
+ V + E+ AI+ FE+ L DP V AY+GL A+ G L E EK I
Sbjct: 111 VNIGLVYNSLEETSKAIEAFEKALEIDPANVFAYNGLGDAWYG----LGEREKAIDAFRK 166
Query: 247 XXXXXXXXSDLRDFKL--LIAQIKVMESKHSEALRVYEELVKEEPRDFR-PYLCQGIIYT 303
+ F L L + E E L E V+ +P DF YL G +Y
Sbjct: 167 GIELDPTDAAAH-FNLGELYYDLGETEEAEKECL----EAVRLDP-DFTMSYLTLGSLYM 220
Query: 304 LLRKKDEAEKQFEKFRRLVPRNHPYREYFVDNMVA 338
+ +A + E + L P VD + A
Sbjct: 221 DDERVKDAIRYLELY--LQKEKSPQARETVDEVKA 253
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.315 0.131 0.359 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 355 317 0.00083 116 3 11 22 0.42 34
33 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 8
No. of states in DFA: 596 (63 KB)
Total size of DFA: 196 KB (2112 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 29.45u 0.10s 29.55t Elapsed: 00:00:01
Total cpu time: 29.45u 0.10s 29.55t Elapsed: 00:00:01
Start: Fri May 10 19:24:01 2013 End: Fri May 10 19:24:02 2013
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | eugene3.00160735 | hypothetical protein (340 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 355 | |||
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 4e-09 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 6e-09 | |
| COG0457 | 291 | COG0457, NrfG, FOG: TPR repeat [General function p | 3e-07 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 6e-07 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 3e-06 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 6e-06 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 2e-05 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 3e-05 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 4e-05 | |
| COG4235 | 287 | COG4235, COG4235, Cytochrome c biogenesis factor [ | 7e-05 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 1e-04 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 5e-04 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 0.001 | |
| COG0457 | 291 | COG0457, NrfG, FOG: TPR repeat [General function p | 0.001 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 57.8 bits (140), Expect = 4e-09
Identities = 37/198 (18%), Positives = 74/198 (37%), Gaps = 7/198 (3%)
Query: 132 EEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQ 191
E +K EQ LA +P + A L ++ + + EA +ID ++ +P + LLK
Sbjct: 142 ELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGD 201
Query: 192 VQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKE 251
+ G E A+ + + + P A + + E EK + +++
Sbjct: 202 LLLSLGNIELALAAYRKAIALRP-NNIAVLLALATILIEAGEFEEAEKHADALLKKAPNS 260
Query: 252 KKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEA 311
L+ A + + + +A ++ +K P L G L ++A
Sbjct: 261 PLAHYLK------ALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQA 314
Query: 312 EKQFEKFRRLVPRNHPYR 329
+ + + P +H R
Sbjct: 315 YQYLNQILKYAPNSHQAR 332
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 57.0 bits (138), Expect = 6e-09
Identities = 43/201 (21%), Positives = 73/201 (36%), Gaps = 19/201 (9%)
Query: 131 YEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKA 190
E + +A PN+I L L + I++ + EA D L++ PN LKA
Sbjct: 209 IELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKA 268
Query: 191 QVQSYAGESEAAIKGFEEILRKDPLRVEA--YHGLVMAYDGS----DKKLNEVEKRIEKA 244
V E A + ++ L+ P + A G G+ + LN++ K
Sbjct: 269 LVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAP-- 326
Query: 245 MERCKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTL 304
+ + L+A I++ + EA+ + +P D G Y
Sbjct: 327 -----------NSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLA 375
Query: 305 LRKKDEAEKQFEKFRRLVPRN 325
L ++A + K L P N
Sbjct: 376 LGDFEKAAEYLAKATELDPEN 396
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 51.4 bits (121), Expect = 3e-07
Identities = 45/197 (22%), Positives = 86/197 (43%), Gaps = 6/197 (3%)
Query: 131 YEEKEKEIEQHLA--ANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPN-EFEWQL 187
EE + +E+ L PN EAL L + K EA++++++ + L+P+ + L
Sbjct: 75 LEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEAL 134
Query: 188 LKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMER 247
L G+ E A++ +E+ L DP + ++A + L E+ +E +
Sbjct: 135 LALGALYELGDYEEALELYEKALELDP-ELNELAEALLALGALLEALGRYEEALELLEKA 193
Query: 248 CKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRK 307
K D + L + + + K+ EAL YE+ ++ +P + ++ L +
Sbjct: 194 LKLNPD--DDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGR 251
Query: 308 KDEAEKQFEKFRRLVPR 324
+EA + EK L P
Sbjct: 252 YEEALEALEKALELDPD 268
|
Length = 291 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 51.2 bits (123), Expect = 6e-07
Identities = 42/229 (18%), Positives = 85/229 (37%), Gaps = 17/229 (7%)
Query: 97 SIKPAIAAPVAAAATVESTNESTKDTTSAREDVSYEEKEKEIEQHLAANPNDIEALQTLM 156
A A + + D A S+++ P+ AL L
Sbjct: 592 EAADAAPDSPEAWLMLGRAQLAAGDLNKAVS--SFKKLLAL-------QPDSALALLLLA 642
Query: 157 EVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLR 216
+ + +A+ + R +EL+P+ E Q+ AQ+ A +E+A K + + ++ P
Sbjct: 643 DAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPK- 701
Query: 217 VEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSE 276
L +G L +K A++ +K K++ + + + + +E
Sbjct: 702 ----AALGFELEGD---LYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAE 754
Query: 277 ALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRN 325
A++ E +K P D +Y + D+A K ++ + P N
Sbjct: 755 AVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYQTVVKKAPDN 803
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 3e-06
Identities = 29/101 (28%), Positives = 48/101 (47%), Gaps = 1/101 (0%)
Query: 150 EALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEI 209
EAL L + K EA++ ++ +EL+P+ + A G+ E A++ +E+
Sbjct: 1 EALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKA 60
Query: 210 LRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK 250
L DP +AY+ L +AY K E + EKA+E
Sbjct: 61 LELDPDNAKAYYNLGLAYYKL-GKYEEALEAYEKALELDPN 100
|
Length = 100 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 6e-06
Identities = 28/187 (14%), Positives = 72/187 (38%), Gaps = 7/187 (3%)
Query: 131 YEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKA 190
+ + E+ L+ P+ A L + I+ +A+ ++++ ++P L A
Sbjct: 481 LAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALA 540
Query: 191 QVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK 250
+ G E A+ E+ +P +E L Y G +++K + E
Sbjct: 541 GLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGK----GQLKKALAILNEAADA 596
Query: 251 EKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDE 310
+ L++ + ++ ++A+ +++L+ +P L Y +++ +
Sbjct: 597 APDSPEAW---LMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAK 653
Query: 311 AEKQFEK 317
A ++
Sbjct: 654 AITSLKR 660
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 2e-05
Identities = 33/178 (18%), Positives = 66/178 (37%), Gaps = 9/178 (5%)
Query: 132 EEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQ 191
E ++E +P A L+ ++S + +A+ +L + +P+ L
Sbjct: 414 SEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGA 473
Query: 192 VQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKE 251
+ G+ A + FE+ L +P A L D + ++ +R EK + K
Sbjct: 474 IYLGKGDLAKAREAFEKALSIEPDFFPAAANLAR-IDIQEGNPDDAIQRFEKVLTIDPKN 532
Query: 252 KKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKD 309
+ L +A + + EA+ E+ + P++ P L + L K
Sbjct: 533 LRAI------LALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPAL--ALAQYYLGKGQ 582
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 3e-05
Identities = 38/205 (18%), Positives = 82/205 (40%), Gaps = 21/205 (10%)
Query: 130 SYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLK 189
+ E+ + + Q L PN +A + L ++++ ++ EA+ + + L+P++
Sbjct: 310 NLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDD------- 362
Query: 190 AQVQSYAGES-------EAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIE 242
S GE+ E A + + DP A L ++ + + I
Sbjct: 363 PAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQ----GDPSEAIA 418
Query: 243 KAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIY 302
+E + + D L+++ ++ + +AL ++L K++P + + G IY
Sbjct: 419 -DLETAAQLDPELGRADLLLILSYLRSGQFD--KALAAAKKLEKKQPDNASLHNLLGAIY 475
Query: 303 TLLRKKDEAEKQFEKFRRLVPRNHP 327
+A + FEK + P P
Sbjct: 476 LGKGDLAKAREAFEKALSIEPDFFP 500
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 4e-05
Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Query: 238 EKRIEKAMERCKK-EKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYL 296
++A+E +K + D D +A K+ EAL YE+ ++ +P + + Y
Sbjct: 13 LGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYY 72
Query: 297 CQGIIYTLLRKKDEAEKQFEKFRRLVP 323
G+ Y L K +EA + +EK L P
Sbjct: 73 NLGLAYYKLGKYEEALEAYEKALELDP 99
|
Length = 100 |
| >gnl|CDD|226687 COG4235, COG4235, Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 7e-05
Identities = 21/92 (22%), Positives = 31/92 (33%), Gaps = 3/92 (3%)
Query: 139 EQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGE 198
E HL NP D E L + + +A+ + L + E L A+ Y
Sbjct: 146 ETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAG 205
Query: 199 ---SEAAIKGFEEILRKDPLRVEAYHGLVMAY 227
+ A + L DP + A L A
Sbjct: 206 QQMTAKARALLRQALALDPANIRALSLLAFAA 237
|
Length = 287 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 1e-04
Identities = 40/198 (20%), Positives = 82/198 (41%), Gaps = 11/198 (5%)
Query: 131 YEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKA 190
Y + +++ L P++ EA L ++ + +++ A + L + P L+
Sbjct: 651 YAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEG 710
Query: 191 QVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK 250
+ + AAI+ + + L++ P A L A S E K +E + K
Sbjct: 711 DLYLRQKDYPAAIQAYRKALKRAPSSQNAI-KLHRALLAS-GNTAEAVKTLEAWL---KT 765
Query: 251 EKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKD- 309
+ LR +A++ + + + +A++ Y+ +VK+ P D L + + L KD
Sbjct: 766 HPNDAVLR---TALAELYLAQKDYDKAIKHYQTVVKKAP-DNAVVL-NNLAWLYLELKDP 820
Query: 310 EAEKQFEKFRRLVPRNHP 327
A + E+ +L P
Sbjct: 821 RALEYAERALKLAPNIPA 838
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 38.5 bits (90), Expect = 5e-04
Identities = 21/84 (25%), Positives = 41/84 (48%)
Query: 131 YEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKA 190
Y+E + E+ L +P++ +A L K K EA++ ++ +EL+P+ +
Sbjct: 16 YDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLG 75
Query: 191 QVQSYAGESEAAIKGFEEILRKDP 214
G+ E A++ +E+ L DP
Sbjct: 76 LAYYKLGKYEEALEAYEKALELDP 99
|
Length = 100 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 0.001
Identities = 39/185 (21%), Positives = 72/185 (38%), Gaps = 8/185 (4%)
Query: 142 LAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEA 201
L +PND EA L ++ + A + + + L + + L A+ G+ +
Sbjct: 49 LQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQVLPLLARAYLLQGKFQQ 108
Query: 202 AIKGFEEI-LRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDF 260
+ L D E +AY G +L +K E+A+
Sbjct: 109 VLDELPGKTLLDDEGAAELLALRGLAYLGL-GQLELAQKSYEQALA------IDPRSLYA 161
Query: 261 KLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRR 320
KL +AQ+ + E++ EA + +E++ +P + L +G + L + A + K
Sbjct: 162 KLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIA 221
Query: 321 LVPRN 325
L P N
Sbjct: 222 LRPNN 226
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 39.8 bits (91), Expect = 0.001
Identities = 49/203 (24%), Positives = 87/203 (42%), Gaps = 6/203 (2%)
Query: 126 REDVSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIE--LEPNEF 183
+++ + E L N + L L +K +L EA++++++ +E L PN
Sbjct: 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLA 95
Query: 184 EWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEK 243
E L + G+ E A++ E+ L DP A L + E + EK
Sbjct: 96 EALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEK 155
Query: 244 AMERCKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEP-RDFRPYLCQGIIY 302
A+E + + ++ L + + ++ EAL + E+ +K P D L G++Y
Sbjct: 156 ALELDPELNELAEAL---LALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLY 212
Query: 303 TLLRKKDEAEKQFEKFRRLVPRN 325
L K +EA + +EK L P N
Sbjct: 213 LKLGKYEEALEYYEKALELDPDN 235
|
Length = 291 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 355 | |||
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.94 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.93 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.9 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.9 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.89 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.88 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.88 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.88 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.87 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.86 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.86 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.86 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.86 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.85 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.85 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.85 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.84 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.84 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.84 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.84 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.84 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.84 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.83 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.83 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.83 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.82 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.82 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.82 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.8 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.8 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.79 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 99.79 | |
| PLN02789 | 320 | farnesyltranstransferase | 99.78 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.77 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.77 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.76 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.74 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.74 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.73 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.73 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.72 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.72 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.72 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.71 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 99.7 | |
| PLN02789 | 320 | farnesyltranstransferase | 99.7 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 99.7 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.69 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.69 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.69 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.69 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.67 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.67 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.67 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 99.66 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.66 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.65 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.65 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.65 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.64 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.64 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 99.64 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.63 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 99.62 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.6 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 99.59 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.58 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.58 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 99.58 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 99.58 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 99.58 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.57 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 99.57 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 99.57 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.57 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.56 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 99.56 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 99.55 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 99.55 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.54 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 99.54 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 99.54 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 99.53 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 99.52 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 99.52 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 99.51 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 99.51 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 99.49 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.48 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 99.48 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.47 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 99.46 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 99.46 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.45 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 99.45 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 99.45 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 99.44 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.43 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 99.41 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.41 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 99.41 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.4 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.4 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 99.39 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.39 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 99.38 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 99.36 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.36 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 99.36 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 99.35 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.34 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 99.33 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 99.32 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 99.31 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.3 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 99.28 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.28 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 99.28 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 99.27 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 99.25 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.25 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 99.22 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 99.22 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 99.21 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 99.2 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 99.2 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 99.2 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 99.19 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 99.18 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 99.18 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.18 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 99.18 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 99.15 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.14 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 99.14 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 99.14 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 99.14 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.13 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 99.11 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 99.09 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 99.08 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 99.08 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 99.06 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 99.06 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 99.06 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 99.06 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.06 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 99.05 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 99.04 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 99.03 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 99.03 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 99.02 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 98.99 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 98.98 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 98.98 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.98 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 98.97 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 98.97 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.96 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 98.96 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 98.95 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 98.95 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 98.94 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 98.92 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 98.92 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.89 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.89 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.88 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 98.86 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 98.82 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 98.82 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 98.81 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 98.78 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 98.78 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 98.77 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.76 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 98.76 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.76 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 98.75 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 98.73 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.72 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 98.72 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 98.71 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.71 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 98.7 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 98.68 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 98.68 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 98.66 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 98.66 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 98.66 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 98.65 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 98.64 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 98.64 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 98.61 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 98.61 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 98.59 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.56 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 98.53 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 98.53 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 98.53 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 98.51 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 98.49 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 98.48 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 98.45 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 98.43 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 98.41 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 98.35 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 98.35 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 98.34 | |
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 98.33 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 98.31 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 98.3 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 98.3 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 98.3 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 98.29 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 98.28 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 98.27 | |
| KOG0545 | 329 | consensus Aryl-hydrocarbon receptor-interacting pr | 98.26 | |
| KOG0376 | 476 | consensus Serine-threonine phosphatase 2A, catalyt | 98.23 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 98.22 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 98.2 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 98.19 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.18 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 98.17 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 98.16 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 98.11 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.08 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 98.07 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 98.07 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 98.06 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 98.05 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 97.96 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 97.94 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 97.94 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 97.92 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 97.89 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 97.88 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 97.84 | |
| KOG0376 | 476 | consensus Serine-threonine phosphatase 2A, catalyt | 97.84 | |
| KOG0545 | 329 | consensus Aryl-hydrocarbon receptor-interacting pr | 97.83 | |
| KOG2471 | 696 | consensus TPR repeat-containing protein [General f | 97.83 | |
| KOG0530 | 318 | consensus Protein farnesyltransferase, alpha subun | 97.71 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 97.68 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 97.68 | |
| PF04910 | 360 | Tcf25: Transcriptional repressor TCF25; InterPro: | 97.67 | |
| COG0790 | 292 | FOG: TPR repeat, SEL1 subfamily [General function | 97.67 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 97.66 | |
| KOG0551 | 390 | consensus Hsp90 co-chaperone CNS1 (contains TPR re | 97.63 | |
| KOG1308 | 377 | consensus Hsp70-interacting protein Hip/Transient | 97.58 | |
| KOG0530 | 318 | consensus Protein farnesyltransferase, alpha subun | 97.53 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 97.47 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 97.47 | |
| KOG3783 | 546 | consensus Uncharacterized conserved protein [Funct | 97.46 | |
| KOG0551 | 390 | consensus Hsp90 co-chaperone CNS1 (contains TPR re | 97.43 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 97.43 | |
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 97.42 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 97.42 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 97.39 | |
| KOG4507 | 886 | consensus Uncharacterized conserved protein, conta | 97.37 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 97.34 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 97.33 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 97.32 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 97.32 | |
| PF14561 | 90 | TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S | 97.32 | |
| KOG2471 | 696 | consensus TPR repeat-containing protein [General f | 97.31 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 97.3 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 97.29 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 97.27 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 97.21 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 97.17 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 97.17 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 97.17 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 97.12 | |
| PF09986 | 214 | DUF2225: Uncharacterized protein conserved in bact | 97.1 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 97.09 | |
| KOG1308 | 377 | consensus Hsp70-interacting protein Hip/Transient | 97.07 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 97.04 | |
| PF04910 | 360 | Tcf25: Transcriptional repressor TCF25; InterPro: | 97.03 | |
| KOG2300 | 629 | consensus Uncharacterized conserved protein [Funct | 97.01 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 96.99 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 96.94 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 96.93 | |
| KOG2300 | 629 | consensus Uncharacterized conserved protein [Funct | 96.92 | |
| KOG3364 | 149 | consensus Membrane protein involved in organellar | 96.87 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 96.87 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 96.86 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 96.85 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 96.84 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 96.84 | |
| PF14561 | 90 | TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S | 96.83 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 96.83 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 96.8 | |
| PF04781 | 111 | DUF627: Protein of unknown function (DUF627); Inte | 96.79 | |
| KOG4507 | 886 | consensus Uncharacterized conserved protein, conta | 96.79 | |
| KOG2422 | 665 | consensus Uncharacterized conserved protein [Funct | 96.76 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 96.74 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 96.74 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 96.74 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 96.74 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 96.68 | |
| COG5159 | 421 | RPN6 26S proteasome regulatory complex component [ | 96.62 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 96.61 | |
| PF04190 | 260 | DUF410: Protein of unknown function (DUF410) ; Int | 96.59 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 96.59 | |
| PF09986 | 214 | DUF2225: Uncharacterized protein conserved in bact | 96.57 | |
| COG0790 | 292 | FOG: TPR repeat, SEL1 subfamily [General function | 96.55 | |
| KOG3824 | 472 | consensus Huntingtin interacting protein HYPE [Gen | 96.52 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 96.5 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 96.48 | |
| PF12968 | 144 | DUF3856: Domain of Unknown Function (DUF3856); Int | 96.48 | |
| PF12968 | 144 | DUF3856: Domain of Unknown Function (DUF3856); Int | 96.43 | |
| KOG3824 | 472 | consensus Huntingtin interacting protein HYPE [Gen | 96.42 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 96.41 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 96.4 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 96.35 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 96.35 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 96.34 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 96.25 | |
| KOG1839 | 1236 | consensus Uncharacterized protein CLU1/cluA/TIF31 | 96.17 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 96.17 | |
| PF04781 | 111 | DUF627: Protein of unknown function (DUF627); Inte | 96.17 | |
| KOG3364 | 149 | consensus Membrane protein involved in organellar | 96.13 | |
| COG5191 | 435 | Uncharacterized conserved protein, contains HAT (H | 96.1 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 96.06 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 95.94 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 95.91 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 95.82 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 95.82 | |
| KOG1839 | 1236 | consensus Uncharacterized protein CLU1/cluA/TIF31 | 95.76 | |
| KOG2581 | 493 | consensus 26S proteasome regulatory complex, subun | 95.66 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 95.66 | |
| KOG1463 | 411 | consensus 26S proteasome regulatory complex, subun | 95.65 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 95.61 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 95.59 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 95.57 | |
| KOG2581 | 493 | consensus 26S proteasome regulatory complex, subun | 95.5 | |
| PF12862 | 94 | Apc5: Anaphase-promoting complex subunit 5 | 95.5 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 95.49 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 95.41 | |
| COG5191 | 435 | Uncharacterized conserved protein, contains HAT (H | 95.38 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 95.38 | |
| PRK13184 | 932 | pknD serine/threonine-protein kinase; Reviewed | 95.34 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 95.24 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 95.21 | |
| PF11817 | 247 | Foie-gras_1: Foie gras liver health family 1; Inte | 95.16 | |
| KOG4814 | 872 | consensus Uncharacterized conserved protein [Funct | 95.12 | |
| COG2912 | 269 | Uncharacterized conserved protein [Function unknow | 95.06 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 95.05 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 95.04 | |
| COG2912 | 269 | Uncharacterized conserved protein [Function unknow | 95.02 | |
| PF12862 | 94 | Apc5: Anaphase-promoting complex subunit 5 | 94.85 | |
| COG3914 | 620 | Spy Predicted O-linked N-acetylglucosamine transfe | 94.82 | |
| PF07720 | 36 | TPR_3: Tetratricopeptide repeat; InterPro: IPR0117 | 94.71 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 94.68 | |
| KOG1463 | 411 | consensus 26S proteasome regulatory complex, subun | 94.61 | |
| KOG4814 | 872 | consensus Uncharacterized conserved protein [Funct | 94.6 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 94.49 | |
| KOG3807 | 556 | consensus Predicted membrane protein ST7 (tumor su | 94.31 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 94.31 | |
| KOG2422 | 665 | consensus Uncharacterized conserved protein [Funct | 94.21 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 94.04 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 94.0 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 93.97 | |
| PF10579 | 80 | Rapsyn_N: Rapsyn N-terminal myristoylation and lin | 93.86 | |
| PF07720 | 36 | TPR_3: Tetratricopeptide repeat; InterPro: IPR0117 | 93.8 | |
| KOG0128 | 881 | consensus RNA-binding protein SART3 (RRM superfami | 93.8 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 93.76 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 93.65 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 93.61 | |
| COG3914 | 620 | Spy Predicted O-linked N-acetylglucosamine transfe | 93.44 | |
| COG5159 | 421 | RPN6 26S proteasome regulatory complex component [ | 93.42 | |
| PRK13184 | 932 | pknD serine/threonine-protein kinase; Reviewed | 93.38 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 93.37 | |
| PF09670 | 379 | Cas_Cas02710: CRISPR-associated protein (Cas_Cas02 | 93.34 | |
| KOG0546 | 372 | consensus HSP90 co-chaperone CPR7/Cyclophilin [Pos | 93.26 | |
| PF12854 | 34 | PPR_1: PPR repeat | 93.16 | |
| PF08311 | 126 | Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro | 93.15 | |
| PF15015 | 569 | NYD-SP12_N: Spermatogenesis-associated, N-terminal | 93.09 | |
| KOG2758 | 432 | consensus Translation initiation factor 3, subunit | 93.0 | |
| PF10516 | 38 | SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat | 92.82 | |
| PF00244 | 236 | 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14 | 92.81 | |
| PF12854 | 34 | PPR_1: PPR repeat | 92.68 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 92.67 | |
| PF10516 | 38 | SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat | 92.31 | |
| KOG0529 | 421 | consensus Protein geranylgeranyltransferase type I | 92.04 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 91.51 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 91.51 | |
| KOG0687 | 393 | consensus 26S proteasome regulatory complex, subun | 91.35 | |
| smart00386 | 33 | HAT HAT (Half-A-TPR) repeats. Present in several R | 91.29 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 90.99 | |
| PF10373 | 278 | EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP | 90.76 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 90.74 | |
| smart00386 | 33 | HAT HAT (Half-A-TPR) repeats. Present in several R | 90.5 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 90.46 | |
| PF15015 | 569 | NYD-SP12_N: Spermatogenesis-associated, N-terminal | 90.16 | |
| PF04090 | 199 | RNA_pol_I_TF: RNA polymerase I specific initiation | 89.97 | |
| PF10255 | 404 | Paf67: RNA polymerase I-associated factor PAF67; I | 89.92 | |
| KOG3807 | 556 | consensus Predicted membrane protein ST7 (tumor su | 89.45 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 89.37 | |
| COG3014 | 449 | Uncharacterized protein conserved in bacteria [Fun | 89.17 | |
| PF10579 | 80 | Rapsyn_N: Rapsyn N-terminal myristoylation and lin | 88.89 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 88.74 | |
| COG5187 | 412 | RPN7 26S proteasome regulatory complex component, | 88.7 | |
| KOG4279 | 1226 | consensus Serine/threonine protein kinase [Signal | 88.67 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 88.58 | |
| PF11846 | 193 | DUF3366: Domain of unknown function (DUF3366); Int | 88.36 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 88.28 | |
| PF10373 | 278 | EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP | 88.17 | |
| KOG0529 | 421 | consensus Protein geranylgeranyltransferase type I | 88.11 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 87.38 | |
| PF14863 | 141 | Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB | 87.33 | |
| PF10255 | 404 | Paf67: RNA polymerase I-associated factor PAF67; I | 87.24 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 87.1 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 86.57 | |
| PF09670 | 379 | Cas_Cas02710: CRISPR-associated protein (Cas_Cas02 | 85.86 | |
| KOG0687 | 393 | consensus 26S proteasome regulatory complex, subun | 85.62 | |
| PF00244 | 236 | 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14 | 85.53 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 85.46 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 85.25 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 84.31 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 84.3 | |
| PF09797 | 365 | NatB_MDM20: N-acetyltransferase B complex (NatB) n | 84.27 | |
| KOG4014 | 248 | consensus Uncharacterized conserved protein (conta | 83.54 | |
| COG5116 | 926 | RPN2 26S proteasome regulatory complex component [ | 83.36 | |
| smart00101 | 244 | 14_3_3 14-3-3 homologues. 14-3-3 homologues mediat | 82.77 | |
| KOG2062 | 929 | consensus 26S proteasome regulatory complex, subun | 82.02 | |
| PF12739 | 414 | TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex | 82.01 | |
| cd02680 | 75 | MIT_calpain7_2 MIT: domain contained within Microt | 81.75 | |
| KOG4014 | 248 | consensus Uncharacterized conserved protein (conta | 81.43 | |
| COG4941 | 415 | Predicted RNA polymerase sigma factor containing a | 81.28 | |
| smart00777 | 125 | Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region | 81.22 | |
| PF11817 | 247 | Foie-gras_1: Foie gras liver health family 1; Inte | 81.16 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 80.49 | |
| KOG0686 | 466 | consensus COP9 signalosome, subunit CSN1 [Posttran | 80.26 | |
| KOG0686 | 466 | consensus COP9 signalosome, subunit CSN1 [Posttran | 80.08 |
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.3e-26 Score=196.94 Aligned_cols=210 Identities=19% Similarity=0.131 Sum_probs=116.7
Q ss_pred ccccccccccchhhhhhhhhhhcc-CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCch
Q 040440 105 PVAAAATVESTNESTKDTTSARED-VSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEF 183 (355)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~ 183 (355)
++...|.+.-++..++-. +.. ++...|+..|+++++.+|+..++|+++|.+|...+.+++|+..|.+++.+.|+..
T Consensus 210 Ai~~qp~fAiawsnLg~~---f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A 286 (966)
T KOG4626|consen 210 AIETQPCFAIAWSNLGCV---FNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHA 286 (966)
T ss_pred HHhhCCceeeeehhcchH---HhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcch
Confidence 444555555555555443 222 3666667777777777776666666666666666666666666666666666666
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHH
Q 040440 184 EWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLL 263 (355)
Q Consensus 184 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~ 263 (355)
.++-++|.+|+.+|..+-|+..|++++++.|+.++++.+++.++...|+ ..++...|.+|+.+ .+...+...+
T Consensus 287 ~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~-V~ea~~cYnkaL~l------~p~hadam~N 359 (966)
T KOG4626|consen 287 VAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGS-VTEAVDCYNKALRL------CPNHADAMNN 359 (966)
T ss_pred hhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccc-hHHHHHHHHHHHHh------CCccHHHHHH
Confidence 6666666666666666666666666666666666666666666655555 33333333333333 3444444455
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 040440 264 IAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPR 324 (355)
Q Consensus 264 la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~ 324 (355)
||.+|.++|++++|...|+++++..|+-..+..++|.+|.++|++++|+.+|++++.+.|.
T Consensus 360 Lgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~ 420 (966)
T KOG4626|consen 360 LGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPT 420 (966)
T ss_pred HHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCch
Confidence 5555555555555555555555554444444445555555555555555555555544443
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.4e-24 Score=186.78 Aligned_cols=219 Identities=18% Similarity=0.155 Sum_probs=151.9
Q ss_pred ccccccccccchhhhhhhhhhhccC-CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCch
Q 040440 105 PVAAAATVESTNESTKDTTSAREDV-SYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEF 183 (355)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~ 183 (355)
++..+|.+..+...+... |... .+++|+.+|.+++...|++..++-++|.+|+.+|+.+-|+..|+++++++|+.+
T Consensus 244 AvkldP~f~dAYiNLGnV---~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~ 320 (966)
T KOG4626|consen 244 AVKLDPNFLDAYINLGNV---YKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFP 320 (966)
T ss_pred hhcCCCcchHHHhhHHHH---HHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCch
Confidence 567777777777777766 5544 677777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHH-------------------------
Q 040440 184 EWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVE------------------------- 238 (355)
Q Consensus 184 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~------------------------- 238 (355)
+++.++|..+...|+..+|..+|.+++.+.|+++++.+++|.+|..+|. ++.|.
T Consensus 321 ~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~-~e~A~~ly~~al~v~p~~aaa~nNLa~i~k 399 (966)
T KOG4626|consen 321 DAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGK-IEEATRLYLKALEVFPEFAAAHNNLASIYK 399 (966)
T ss_pred HHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcc-chHHHHHHHHHHhhChhhhhhhhhHHHHHH
Confidence 7777777766667777777777777777777777776677776666665 33332
Q ss_pred --HHHHHHHHHHHh-hccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHH
Q 040440 239 --KRIEKAMERCKK-EKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQF 315 (355)
Q Consensus 239 --~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 315 (355)
+.+++|+..+++ +...|.-.+.+.++|..|..+|+.+.|+++|.+++..+|...+++.++|.+|...|+..+|+..|
T Consensus 400 qqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY 479 (966)
T KOG4626|consen 400 QQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSY 479 (966)
T ss_pred hcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHH
Confidence 225555555555 45566667777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHhCCCChh
Q 040440 316 EKFRRLVPRNHP 327 (355)
Q Consensus 316 ~~~l~~~p~~~~ 327 (355)
++++++.|+.++
T Consensus 480 ~~aLklkPDfpd 491 (966)
T KOG4626|consen 480 RTALKLKPDFPD 491 (966)
T ss_pred HHHHccCCCCch
Confidence 777777776543
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.4e-21 Score=181.91 Aligned_cols=188 Identities=19% Similarity=0.191 Sum_probs=177.4
Q ss_pred CHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHH
Q 040440 130 SYEEKEKEIEQHLAA---NPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGF 206 (355)
Q Consensus 130 ~~~~A~~~~~~~l~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 206 (355)
+|++|++.|+++++. .|....++..+|.++...|++++|+..|+++++.+|+....|..+|.++...|++++|+..|
T Consensus 309 ~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~ 388 (615)
T TIGR00990 309 SYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDF 388 (615)
T ss_pred hHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 789999999999986 47788899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 040440 207 EEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELV 285 (355)
Q Consensus 207 ~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 285 (355)
+++++.+|+++.+++.+|.++...|+ +++|+..+++ +...|++...+..+|.++...|++++|+..|++++
T Consensus 389 ~~al~~~p~~~~~~~~lg~~~~~~g~--------~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al 460 (615)
T TIGR00990 389 DKALKLNSEDPDIYYHRAQLHFIKGE--------FAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCK 460 (615)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999 7777777766 55678888999999999999999999999999999
Q ss_pred HhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 040440 286 KEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRN 325 (355)
Q Consensus 286 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~ 325 (355)
...|+++.++..+|.++..+|++++|+..|++++.+.|++
T Consensus 461 ~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~ 500 (615)
T TIGR00990 461 KNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKET 500 (615)
T ss_pred HhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCcc
Confidence 9999999999999999999999999999999999999875
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.3e-21 Score=181.01 Aligned_cols=218 Identities=15% Similarity=0.107 Sum_probs=175.9
Q ss_pred ccccccccccchhhhhhhhhhhccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchH
Q 040440 105 PVAAAATVESTNESTKDTTSAREDVSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFE 184 (355)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 184 (355)
.+...|.....+..++.. ....+++++|+..++++++.+|++..+++.+|.++...|++++|+..|+++++++|++..
T Consensus 357 al~l~P~~~~~~~~la~~--~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~ 434 (615)
T TIGR00990 357 SIELDPRVTQSYIKRASM--NLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIF 434 (615)
T ss_pred HHHcCCCcHHHHHHHHHH--HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHH
Confidence 344556655555555554 123449999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHH
Q 040440 185 WQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLI 264 (355)
Q Consensus 185 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~l 264 (355)
.+..+|.++...|++++|+..|+++++..|+++.++..+|.++...|+ +++|...+++|+++.............+...
T Consensus 435 ~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~-~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~ 513 (615)
T TIGR00990 435 SHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNK-FDEAIEKFDTAIELEKETKPMYMNVLPLINK 513 (615)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccC-HHHHHHHHHHHHhcCCccccccccHHHHHHH
Confidence 999999999999999999999999999999999999999999999998 4555555555554422211111111122233
Q ss_pred H-HHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 040440 265 A-QIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRN 325 (355)
Q Consensus 265 a-~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~ 325 (355)
+ .++...|++++|+..+++++..+|++..++..+|.++...|++++|+.+|++++++.+..
T Consensus 514 a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~ 575 (615)
T TIGR00990 514 ALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTE 575 (615)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccH
Confidence 3 334457999999999999999999999999999999999999999999999999998764
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.6e-22 Score=173.81 Aligned_cols=198 Identities=22% Similarity=0.247 Sum_probs=179.7
Q ss_pred ccCCHHHHHHHHHHHH----------------------------------HcCCCCHHHHHHHHHHHHHccCHHHHHHHH
Q 040440 127 EDVSYEEKEKEIEQHL----------------------------------AANPNDIEALQTLMEVRIKSQKLVEAVDVI 172 (355)
Q Consensus 127 ~~~~~~~A~~~~~~~l----------------------------------~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 172 (355)
+..+|++|+++|+.+- ..+|+.++.|..+|.+|..+++++.|+++|
T Consensus 365 El~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f 444 (638)
T KOG1126|consen 365 ELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCF 444 (638)
T ss_pred HHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHH
Confidence 3348999999888863 337888999999999999999999999999
Q ss_pred HHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-h
Q 040440 173 DRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-E 251 (355)
Q Consensus 173 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~ 251 (355)
+++++++|....+|-.+|.-+....++|.|..+|++++..+|.+-.+|+++|.+|.++++ ++.|.-.|++ .
T Consensus 445 ~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek--------~e~Ae~~fqkA~ 516 (638)
T KOG1126|consen 445 KRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEK--------LEFAEFHFQKAV 516 (638)
T ss_pred HHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccch--------hhHHHHHHHhhh
Confidence 999999999999999999999999999999999999999999999999999999999999 5555555555 4
Q ss_pred ccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHH
Q 040440 252 KKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHPYREY 331 (355)
Q Consensus 252 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~ 331 (355)
..+|.+..+...+|.++.++|+.|+|+.+|++++.++|.++...+..|.++..++++++|+..+++..++.|++......
T Consensus 517 ~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~l 596 (638)
T KOG1126|consen 517 EINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFAL 596 (638)
T ss_pred cCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHH
Confidence 55899999999999999999999999999999999999999999999999999999999999999999999988554433
Q ss_pred H
Q 040440 332 F 332 (355)
Q Consensus 332 ~ 332 (355)
+
T Consensus 597 l 597 (638)
T KOG1126|consen 597 L 597 (638)
T ss_pred H
Confidence 3
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.3e-22 Score=173.48 Aligned_cols=209 Identities=16% Similarity=0.104 Sum_probs=194.3
Q ss_pred ccccccccchhhhhhhhhhhccC-CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHH
Q 040440 107 AAAATVESTNESTKDTTSAREDV-SYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEW 185 (355)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 185 (355)
..++....+|-.+++- |..+ +.+.|+++|+++++.+|+...+|..+|.-+....++|.|..+|++++..+|.+..+
T Consensus 415 ~~~~~sPesWca~GNc---fSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnA 491 (638)
T KOG1126|consen 415 DTDPNSPESWCALGNC---FSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNA 491 (638)
T ss_pred hhCCCCcHHHHHhcch---hhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHH
Confidence 3455666667666665 6666 99999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hccCCchHHHHHHH
Q 040440 186 QLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLI 264 (355)
Q Consensus 186 ~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~l 264 (355)
|+.+|.+|.++++++.|.-.|++|++++|.+......+|.++.+.|+ .++|++++++ ...++.++...+..
T Consensus 492 wYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~--------~d~AL~~~~~A~~ld~kn~l~~~~~ 563 (638)
T KOG1126|consen 492 WYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKR--------KDKALQLYEKAIHLDPKNPLCKYHR 563 (638)
T ss_pred HHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhh--------hhHHHHHHHHHHhcCCCCchhHHHH
Confidence 99999999999999999999999999999999999999999999998 7777777777 56689999999999
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q 040440 265 AQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNH 326 (355)
Q Consensus 265 a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~ 326 (355)
|.+++..+++++|+..++++.+.-|++..+++.+|.+|.++|+.+.|+..|.-+.+++|...
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~ 625 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGA 625 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999863
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.3e-20 Score=172.28 Aligned_cols=191 Identities=15% Similarity=0.085 Sum_probs=171.1
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc---------cCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHH
Q 040440 130 SYEEKEKEIEQHLAANPNDIEALQTLMEVRIKS---------QKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESE 200 (355)
Q Consensus 130 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~---------g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 200 (355)
++++|+..|+++++.+|++..++..+|.+|... +++++|+..++++++++|++..++..+|.++...|+++
T Consensus 276 ~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~ 355 (553)
T PRK12370 276 SLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYI 355 (553)
T ss_pred HHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHH
Confidence 678999999999999999999999999987744 34899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHHHccCHHHHHH
Q 040440 201 AAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQIKVMESKHSEALR 279 (355)
Q Consensus 201 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 279 (355)
+|+..|+++++++|++..+++.+|.++...|+ +++|+..+++ ...+|.+......++.+++..|++++|+.
T Consensus 356 ~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~--------~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~ 427 (553)
T PRK12370 356 VGSLLFKQANLLSPISADIKYYYGWNLFMAGQ--------LEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIR 427 (553)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHH
Confidence 99999999999999999999999999999999 7777777777 55577777666667777888999999999
Q ss_pred HHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhH
Q 040440 280 VYEELVKEE-PRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHPY 328 (355)
Q Consensus 280 ~~~~~l~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 328 (355)
.+++++... |+++..+..+|.++...|++++|...+++.....|.+...
T Consensus 428 ~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~ 477 (553)
T PRK12370 428 LGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIA 477 (553)
T ss_pred HHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHH
Confidence 999999875 7788899999999999999999999999988887765433
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.9e-20 Score=156.48 Aligned_cols=218 Identities=16% Similarity=0.152 Sum_probs=177.3
Q ss_pred hccCCHHHHHHHHHHHHHcCCCCH---HHHH-------------------------------HHHHHHHHccCHHHHHHH
Q 040440 126 REDVSYEEKEKEIEQHLAANPNDI---EALQ-------------------------------TLMEVRIKSQKLVEAVDV 171 (355)
Q Consensus 126 ~~~~~~~~A~~~~~~~l~~~p~~~---~~~~-------------------------------~la~~~~~~g~~~~A~~~ 171 (355)
|...|+++|+..|+++.+.+|-.. +.+. .+|+.|...++.++|+.+
T Consensus 273 y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~Y 352 (559)
T KOG1155|consen 273 YNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMY 352 (559)
T ss_pred hhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHH
Confidence 555599999999999999988532 2211 135556677899999999
Q ss_pred HHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhh
Q 040440 172 IDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKE 251 (355)
Q Consensus 172 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~ 251 (355)
|+++++++|....+|..+|.-|..+.+...|++.|+++++++|.+-.+|+++|+.|..++- ..-++-++++|.++
T Consensus 353 FkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~M-h~YaLyYfqkA~~~---- 427 (559)
T KOG1155|consen 353 FKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKM-HFYALYYFQKALEL---- 427 (559)
T ss_pred HHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcc-hHHHHHHHHHHHhc----
Confidence 9999999999999999999999999999999999999999999999999999999998887 33344445555444
Q ss_pred ccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChhHH
Q 040440 252 KKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLV--PRNHPYR 329 (355)
Q Consensus 252 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~ 329 (355)
.|.+..+|..+|.+|.+.++.++|+++|.+++.....+..++..+|.+|.++++.++|..+|++.++.. -....-.
T Consensus 428 --kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~ 505 (559)
T KOG1155|consen 428 --KPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDE 505 (559)
T ss_pred --CCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchH
Confidence 899999999999999999999999999999999988888999999999999999999999999999843 1111111
Q ss_pred HHHHHHHHHHHHhccHHhhhh
Q 040440 330 EYFVDNMVATKIFGEKVDRES 350 (355)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~ 350 (355)
.....+.++..++..++..++
T Consensus 506 t~ka~~fLA~~f~k~~~~~~A 526 (559)
T KOG1155|consen 506 TIKARLFLAEYFKKMKDFDEA 526 (559)
T ss_pred HHHHHHHHHHHHHhhcchHHH
Confidence 222344455555555554443
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.8e-19 Score=169.05 Aligned_cols=222 Identities=11% Similarity=0.031 Sum_probs=168.2
Q ss_pred cccccccccchhhhhhhhhhhccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHH
Q 040440 106 VAAAATVESTNESTKDTTSAREDVSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEW 185 (355)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 185 (355)
+...|....++..++.. ....+++++|+..++++++.+|++..++..+|.++...|++++|+..|+++++.+|++..+
T Consensus 69 l~~~p~~~~~l~~l~~~--~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a 146 (656)
T PRK15174 69 VLTAKNGRDLLRRWVIS--PLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQI 146 (656)
T ss_pred HHhCCCchhHHHHHhhh--HhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHH
Confidence 34455555555555533 1334599999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHH---------------------------
Q 040440 186 QLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVE--------------------------- 238 (355)
Q Consensus 186 ~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~--------------------------- 238 (355)
+..++.++...|++++|+..+++++...|++...+..++. +...|+ +++|.
T Consensus 147 ~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~~-l~~~g~-~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~ 224 (656)
T PRK15174 147 FALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCLS-FLNKSR-LPEDHDLARALLPFFALERQESAGLAVDTLCA 224 (656)
T ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHHH-HHHcCC-HHHHHHHHHHHHhcCCCcchhHHHHHHHHHHH
Confidence 9999999999999999999999888888888777655433 444444 22221
Q ss_pred -HHHHHHHHHHHh-hccCCchHHHHHHHHHHHHHccCHHH----HHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHH
Q 040440 239 -KRIEKAMERCKK-EKKKSDLRDFKLLIAQIKVMESKHSE----ALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAE 312 (355)
Q Consensus 239 -~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~----A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~ 312 (355)
+.+++|+..+++ ....|++..++..+|.+|...|++++ |+..|+++++.+|++..++..+|.++...|++++|+
T Consensus 225 ~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~ 304 (656)
T PRK15174 225 VGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAI 304 (656)
T ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 224455555555 44566777777788888888888875 788888888888888888888888888888888888
Q ss_pred HHHHHHHHhCCCChhHHHH
Q 040440 313 KQFEKFRRLVPRNHPYREY 331 (355)
Q Consensus 313 ~~~~~~l~~~p~~~~~~~~ 331 (355)
.++++++.++|++......
T Consensus 305 ~~l~~al~l~P~~~~a~~~ 323 (656)
T PRK15174 305 PLLQQSLATHPDLPYVRAM 323 (656)
T ss_pred HHHHHHHHhCCCCHHHHHH
Confidence 8888888888877554433
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.7e-19 Score=145.77 Aligned_cols=184 Identities=16% Similarity=0.156 Sum_probs=115.4
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 040440 130 SYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEI 209 (355)
Q Consensus 130 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 209 (355)
++++|+..++++++.+|++..++..+|.++...|++++|++.++++++..|.+...+..+|.++...|++++|++.++++
T Consensus 46 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~ 125 (234)
T TIGR02521 46 DLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQA 125 (234)
T ss_pred CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 66666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HhhC--CCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 040440 210 LRKD--PLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVK 286 (355)
Q Consensus 210 ~~~~--p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 286 (355)
+... +.....+..++.++...|+ +++|+..+.+ ....+.....+..+|.++...|++++|+..+++++.
T Consensus 126 ~~~~~~~~~~~~~~~l~~~~~~~g~--------~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 197 (234)
T TIGR02521 126 IEDPLYPQPARSLENAGLCALKAGD--------FDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQ 197 (234)
T ss_pred HhccccccchHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6542 3344556666666666666 4444444444 233444555666666666666666666666666666
Q ss_pred hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 040440 287 EEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRL 321 (355)
Q Consensus 287 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 321 (355)
..|.+...+..++.++...|+.++|..+.+.+...
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 198 TYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred hCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 65555666666666666666666666666555444
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.8e-19 Score=171.91 Aligned_cols=208 Identities=9% Similarity=0.017 Sum_probs=183.6
Q ss_pred hccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHH
Q 040440 126 REDVSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKG 205 (355)
Q Consensus 126 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 205 (355)
...+++++|+..+++++...|.+ ..+..+|.++...|++++|+.+|+++++.+|.....+..++......|++++|+..
T Consensus 520 ~~~Gr~eeAi~~~rka~~~~p~~-~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~ 598 (987)
T PRK09782 520 YQVEDYATALAAWQKISLHDMSN-EDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALND 598 (987)
T ss_pred HHCCCHHHHHHHHHHHhccCCCc-HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHH
Confidence 35569999999999988775554 55788999999999999999999999999998887777777777788999999999
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 040440 206 FEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQIKVMESKHSEALRVYEEL 284 (355)
Q Consensus 206 ~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 284 (355)
|+++++.+|+ ...+..++.++.+.|+ +++|+..+++ ....|++..++..+|.++...|++++|+..|+++
T Consensus 599 ~~~AL~l~P~-~~a~~~LA~~l~~lG~--------~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~A 669 (987)
T PRK09782 599 LTRSLNIAPS-ANAYVARATIYRQRHN--------VPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERA 669 (987)
T ss_pred HHHHHHhCCC-HHHHHHHHHHHHHCCC--------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 9999999996 8999999999999999 7777777777 5668999999999999999999999999999999
Q ss_pred HHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhc
Q 040440 285 VKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHPYREYFVDNMVATKIFG 343 (355)
Q Consensus 285 l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~ 343 (355)
++.+|+++.+++++|.++..+|++++|+.+|+++++++|++.........+.....+|.
T Consensus 670 L~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~ 728 (987)
T PRK09782 670 HKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFR 728 (987)
T ss_pred HHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999988666555555554444443
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.8e-19 Score=166.25 Aligned_cols=217 Identities=14% Similarity=0.070 Sum_probs=171.5
Q ss_pred ccccccccccchhhhhhhhhhhccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchH
Q 040440 105 PVAAAATVESTNESTKDTTSAREDVSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFE 184 (355)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 184 (355)
.+...|....++..++.. ....+++++|+..++++++.+|++..++..++.++...|++++|+..+++++...|++..
T Consensus 102 ~l~~~P~~~~a~~~la~~--l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~ 179 (656)
T PRK15174 102 LLAVNVCQPEDVLLVASV--LLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGD 179 (656)
T ss_pred HHHhCCCChHHHHHHHHH--HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHH
Confidence 344556666666655554 233348999999999999999999998888898888888888888888888777766655
Q ss_pred HHH----------------------------------HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhcc
Q 040440 185 WQL----------------------------------LKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGS 230 (355)
Q Consensus 185 ~~~----------------------------------~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 230 (355)
.+. .++.++...|++++|+..|+++++.+|++..++..+|.++...
T Consensus 180 a~~~~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~ 259 (656)
T PRK15174 180 MIATCLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQS 259 (656)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Confidence 432 2345666778888888888888888888888888899999888
Q ss_pred CchHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHH
Q 040440 231 DKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKD 309 (355)
Q Consensus 231 ~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~ 309 (355)
|+ ++++ ..+|+..+++ ....|++..++..+|.++...|++++|+..+++++..+|++..++..+|.++...|+++
T Consensus 260 G~-~~eA---~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~ 335 (656)
T PRK15174 260 GR-SREA---KLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYT 335 (656)
T ss_pred CC-chhh---HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHH
Confidence 88 2210 0125555555 44578889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCChh
Q 040440 310 EAEKQFEKFRRLVPRNHP 327 (355)
Q Consensus 310 ~A~~~~~~~l~~~p~~~~ 327 (355)
+|+..|++++...|++..
T Consensus 336 eA~~~l~~al~~~P~~~~ 353 (656)
T PRK15174 336 AASDEFVQLAREKGVTSK 353 (656)
T ss_pred HHHHHHHHHHHhCccchH
Confidence 999999999999997643
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.5e-20 Score=156.26 Aligned_cols=221 Identities=17% Similarity=0.142 Sum_probs=188.5
Q ss_pred ccccccccccccccchhhhhhhhhhhccC-CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Q 040440 101 AIAAPVAAAATVESTNESTKDTTSAREDV-SYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELE 179 (355)
Q Consensus 101 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 179 (355)
.+...+..++.+.+..+.++.. |.+. +-++-...|.++...+|+++++|+..|++++-.+++++|+.-|++++.++
T Consensus 348 d~~~~I~l~~~~~~lyI~~a~~---y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~ 424 (606)
T KOG0547|consen 348 DFDAAIKLDPAFNSLYIKRAAA---YADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLD 424 (606)
T ss_pred hHHHHHhcCcccchHHHHHHHH---HhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 3444566777777767777666 7766 89999999999999999999999999999999999999999999999999
Q ss_pred CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHH
Q 040440 180 PNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRD 259 (355)
Q Consensus 180 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~ 259 (355)
|++...+..++.+.+++++++++...|+++.+..|+.++++...+.++..+++ ++.|.+.|++|+++-.......-...
T Consensus 425 pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqq-Fd~A~k~YD~ai~LE~~~~~~~v~~~ 503 (606)
T KOG0547|consen 425 PENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQ-FDKAVKQYDKAIELEPREHLIIVNAA 503 (606)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHh-HHHHHHHHHHHHhhccccccccccch
Confidence 99999999999999999999999999999999999999999999999999988 78888888888877544222222233
Q ss_pred HHHHHHHHHH-HccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 040440 260 FKLLIAQIKV-MESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRN 325 (355)
Q Consensus 260 ~~~~la~~~~-~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~ 325 (355)
.+..-|.+.. -.+++.+|+..++++++.+|....++..||.+..++|+.++|+++|+++..+....
T Consensus 504 plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lArt~ 570 (606)
T KOG0547|consen 504 PLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLARTE 570 (606)
T ss_pred hhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhH
Confidence 3333333222 34899999999999999999999999999999999999999999999999886543
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.5e-19 Score=136.28 Aligned_cols=165 Identities=13% Similarity=0.123 Sum_probs=99.6
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhcc
Q 040440 151 ALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGS 230 (355)
Q Consensus 151 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 230 (355)
++..+|..|+..|++..|...++++++.+|++..+|..++.+|...|+.+.|.+.|++++.++|++.+++++.|..++.+
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~q 116 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQ 116 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhC
Confidence 45555666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred CchHHHHHHHHHHHHHHHHh---hccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCC
Q 040440 231 DKKLNEVEKRIEKAMERCKK---EKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRK 307 (355)
Q Consensus 231 ~~~~~~a~~~~~~Al~~~~~---~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~ 307 (355)
|+ +++|...|++ ....+.....+.++|.|..+.|+.+.|..+|+++++.+|+.+.....++..+++.|+
T Consensus 117 g~--------~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~ 188 (250)
T COG3063 117 GR--------PEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGD 188 (250)
T ss_pred CC--------hHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhccc
Confidence 65 4444444444 122334445566666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHHHHHhCC
Q 040440 308 KDEAEKQFEKFRRLVP 323 (355)
Q Consensus 308 ~~~A~~~~~~~l~~~p 323 (355)
+-.|..++++.....+
T Consensus 189 y~~Ar~~~~~~~~~~~ 204 (250)
T COG3063 189 YAPARLYLERYQQRGG 204 (250)
T ss_pred chHHHHHHHHHHhccc
Confidence 6666666666555443
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.7e-19 Score=176.91 Aligned_cols=196 Identities=14% Similarity=0.124 Sum_probs=166.8
Q ss_pred hccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchH--------------HHHHHHH
Q 040440 126 REDVSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFE--------------WQLLKAQ 191 (355)
Q Consensus 126 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~--------------~~~~la~ 191 (355)
...+++++|+..|+++++.+|++..++..+|.+|...|++++|+.+|+++++.+|++.. ....+|.
T Consensus 280 ~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~ 359 (1157)
T PRK11447 280 VDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGD 359 (1157)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHH
Confidence 34459999999999999999999999999999999999999999999999999887642 1234577
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHH-----------
Q 040440 192 VQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDF----------- 260 (355)
Q Consensus 192 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~----------- 260 (355)
++...|++++|+..|+++++.+|++..++..+|.++...|+ +++|...|+++++. .|.+...
T Consensus 360 ~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~-~~eA~~~y~~aL~~------~p~~~~a~~~L~~l~~~~ 432 (1157)
T PRK11447 360 AALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKD-YAAAERYYQQALRM------DPGNTNAVRGLANLYRQQ 432 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHhc
Confidence 88899999999999999999999999999999999999998 55555545444432 2332222
Q ss_pred -------------------------------HHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHH
Q 040440 261 -------------------------------KLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKD 309 (355)
Q Consensus 261 -------------------------------~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~ 309 (355)
+..+|.++...|++++|++.|+++++.+|+++++++.+|.+|...|+++
T Consensus 433 ~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~ 512 (1157)
T PRK11447 433 SPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRS 512 (1157)
T ss_pred CHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence 2345666778899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCChhH
Q 040440 310 EAEKQFEKFRRLVPRNHPY 328 (355)
Q Consensus 310 ~A~~~~~~~l~~~p~~~~~ 328 (355)
+|+..++++++..|++...
T Consensus 513 ~A~~~l~~al~~~P~~~~~ 531 (1157)
T PRK11447 513 QADALMRRLAQQKPNDPEQ 531 (1157)
T ss_pred HHHHHHHHHHHcCCCCHHH
Confidence 9999999999999988554
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.3e-19 Score=149.51 Aligned_cols=198 Identities=14% Similarity=0.138 Sum_probs=176.6
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 040440 130 SYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEI 209 (355)
Q Consensus 130 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 209 (355)
+-++|+.+|+++++.+|....+|..+|.-|..+.+...|++.|+++++++|.+-.+|+.+|+.|..++-..=|+-+|+++
T Consensus 345 eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA 424 (559)
T KOG1155|consen 345 EHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKA 424 (559)
T ss_pred hHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-
Q 040440 210 LRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKE- 287 (355)
Q Consensus 210 ~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~- 287 (355)
.+..|++...|..+|.||.+.++ .++|++.+++ .........++..+|.+|.+.+++++|..+|++.++.
T Consensus 425 ~~~kPnDsRlw~aLG~CY~kl~~--------~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~ 496 (559)
T KOG1155|consen 425 LELKPNDSRLWVALGECYEKLNR--------LEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVS 496 (559)
T ss_pred HhcCCCchHHHHHHHHHHHHhcc--------HHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999 7777777777 3333446778999999999999999999999999983
Q ss_pred ------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHH
Q 040440 288 ------EPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHPYREYFVDN 335 (355)
Q Consensus 288 ------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~ 335 (355)
.++-..+...|+.-+.+.+++++|..+...++.-++.-...+.++..+
T Consensus 497 ~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~~e~eeak~LlRei 550 (559)
T KOG1155|consen 497 ELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKGETECEEAKALLREI 550 (559)
T ss_pred HhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 344456777799999999999999999999988866555555555444
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.84 E-value=8.6e-19 Score=151.11 Aligned_cols=208 Identities=20% Similarity=0.111 Sum_probs=188.0
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 040440 130 SYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEI 209 (355)
Q Consensus 130 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 209 (355)
++.+|.++|-++...+|....+|...|..+...|+.++|+..|..+-++-|....-.+.+|.-|...++++-|.++|.++
T Consensus 327 k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A 406 (611)
T KOG1173|consen 327 KYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQA 406 (611)
T ss_pred CcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999998888788888999999999999999999999
Q ss_pred HhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q 040440 210 LRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEE 288 (355)
Q Consensus 210 ~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 288 (355)
+.+.|.++-+...+|.+.+..+. +.+|..++..++...+. ....+.....+.++|.+|.+++.+++|+.+|++++.+.
T Consensus 407 ~ai~P~Dplv~~Elgvvay~~~~-y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~ 485 (611)
T KOG1173|consen 407 LAIAPSDPLVLHELGVVAYTYEE-YPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLS 485 (611)
T ss_pred HhcCCCcchhhhhhhheeehHhh-hHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcC
Confidence 99999999999999999988877 78888888888877666 33344577789999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHH
Q 040440 289 PRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHPYREYFVDNMVA 338 (355)
Q Consensus 289 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~ 338 (355)
|.+..++..+|.+|..+|+.+.|+++|.+++.+.|++......+...+..
T Consensus 486 ~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie~ 535 (611)
T KOG1173|consen 486 PKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIED 535 (611)
T ss_pred CCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999997776666655554
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.3e-18 Score=147.97 Aligned_cols=188 Identities=19% Similarity=0.100 Sum_probs=145.5
Q ss_pred hcc-CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHH
Q 040440 126 RED-VSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIK 204 (355)
Q Consensus 126 ~~~-~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 204 (355)
|.. +++++|+..|+++++.+|+++.+|..+|.++...|++++|+..|+++++++|++..++..+|.++...|++++|++
T Consensus 74 ~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~ 153 (296)
T PRK11189 74 YDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQD 153 (296)
T ss_pred HHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 444 4999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHHHccCHHHH--HHHH
Q 040440 205 GFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQIKVMESKHSEA--LRVY 281 (355)
Q Consensus 205 ~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A--~~~~ 281 (355)
.|+++++.+|+++.....+ .+....++ +++|++.+.+ ....+.. .+. .+.++...|++.++ ++.+
T Consensus 154 ~~~~al~~~P~~~~~~~~~-~l~~~~~~--------~~~A~~~l~~~~~~~~~~--~~~-~~~~~~~lg~~~~~~~~~~~ 221 (296)
T PRK11189 154 DLLAFYQDDPNDPYRALWL-YLAESKLD--------PKQAKENLKQRYEKLDKE--QWG-WNIVEFYLGKISEETLMERL 221 (296)
T ss_pred HHHHHHHhCCCCHHHHHHH-HHHHccCC--------HHHHHHHHHHHHhhCCcc--ccH-HHHHHHHccCCCHHHHHHHH
Confidence 9999999999987432222 22334555 6666666654 2111111 111 34455556665443 3222
Q ss_pred HH----HHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 040440 282 EE----LVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRN 325 (355)
Q Consensus 282 ~~----~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~ 325 (355)
.+ ..+..|...++|+.+|.++...|++++|+.+|+++++.+|.+
T Consensus 222 ~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~ 269 (296)
T PRK11189 222 KAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYN 269 (296)
T ss_pred HhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCch
Confidence 22 234556677899999999999999999999999999999754
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.7e-18 Score=154.52 Aligned_cols=191 Identities=15% Similarity=0.131 Sum_probs=143.4
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCc----hHHHHHHHHHHHHcCCHHHH
Q 040440 127 EDVSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNE----FEWQLLKAQVQSYAGESEAA 202 (355)
Q Consensus 127 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~~la~~~~~~g~~~~A 202 (355)
..+++++|+..|+++++.+|++..++..+|.++...|++++|+..+++++...+.. ...+..+|.+|...|++++|
T Consensus 47 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A 126 (389)
T PRK11788 47 LNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRA 126 (389)
T ss_pred hcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 33588888888888888888888888888888888888888888888887653322 24577788888888888888
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhh-ccCCc-----hHHHHHHHHHHHHHccCHHH
Q 040440 203 IKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKE-KKKSD-----LRDFKLLIAQIKVMESKHSE 276 (355)
Q Consensus 203 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~-~~~~~-----~~~~~~~la~~~~~~g~~~~ 276 (355)
+..|+++++..|.+..++..++.++...|+ +++|++.++.. ...+. ...++..+|.++...|++++
T Consensus 127 ~~~~~~~l~~~~~~~~~~~~la~~~~~~g~--------~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 198 (389)
T PRK11788 127 EELFLQLVDEGDFAEGALQQLLEIYQQEKD--------WQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDA 198 (389)
T ss_pred HHHHHHHHcCCcchHHHHHHHHHHHHHhch--------HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHH
Confidence 888888888888888888888888888887 55555555551 11221 12345567777777788888
Q ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 040440 277 ALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRN 325 (355)
Q Consensus 277 A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~ 325 (355)
|+.+|+++++.+|++..+++.+|.++...|++++|+++|++++..+|.+
T Consensus 199 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~ 247 (389)
T PRK11788 199 ARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEY 247 (389)
T ss_pred HHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhh
Confidence 8888888877777777777777788877888888888888777776654
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.8e-18 Score=154.39 Aligned_cols=198 Identities=17% Similarity=0.134 Sum_probs=171.5
Q ss_pred hcc-CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchH-----HHHHHHHHHHHcCCH
Q 040440 126 RED-VSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFE-----WQLLKAQVQSYAGES 199 (355)
Q Consensus 126 ~~~-~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~-----~~~~la~~~~~~g~~ 199 (355)
|.. +++++|+..|+++++.+|.+..++..++.++...|++++|++.++++++..|.+.. .+..+|.++...|++
T Consensus 117 ~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 196 (389)
T PRK11788 117 YLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDL 196 (389)
T ss_pred HHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCH
Confidence 444 49999999999999999999999999999999999999999999999998776532 466789999999999
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhh-ccCCch-HHHHHHHHHHHHHccCHHHH
Q 040440 200 EAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKE-KKKSDL-RDFKLLIAQIKVMESKHSEA 277 (355)
Q Consensus 200 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~-~~~~~~-~~~~~~la~~~~~~g~~~~A 277 (355)
++|+..|+++++.+|++...+..++.++...|+ +++|++.+++. ...+.. ...+..++.+|...|++++|
T Consensus 197 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~--------~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A 268 (389)
T PRK11788 197 DAARALLKKALAADPQCVRASILLGDLALAQGD--------YAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEG 268 (389)
T ss_pred HHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999999999999999999999 77777777772 223333 45678899999999999999
Q ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHH
Q 040440 278 LRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHPYREYF 332 (355)
Q Consensus 278 ~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~ 332 (355)
+..++++++..|+.. .+..++.++.+.|++++|...++++++..|++..+..++
T Consensus 269 ~~~l~~~~~~~p~~~-~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~ 322 (389)
T PRK11788 269 LEFLRRALEEYPGAD-LLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLL 322 (389)
T ss_pred HHHHHHHHHhCCCch-HHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 999999999999664 458999999999999999999999999999875554333
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.5e-18 Score=141.03 Aligned_cols=173 Identities=15% Similarity=0.136 Sum_probs=156.0
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 040440 148 DIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAY 227 (355)
Q Consensus 148 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 227 (355)
....+..+|.++...|++++|+..++++++.+|++...+..+|.++...|++++|++.++++++..|.+...+..++.++
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence 36778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCchHHHHHHHHHHHHHHHHhh---ccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 040440 228 DGSDKKLNEVEKRIEKAMERCKKE---KKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTL 304 (355)
Q Consensus 228 ~~~~~~~~~a~~~~~~Al~~~~~~---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~ 304 (355)
...|+ +++|++.+++. ...+.....+..+|.++...|++++|...+++++..+|++...+..+|.++..
T Consensus 110 ~~~g~--------~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 181 (234)
T TIGR02521 110 CQQGK--------YEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYL 181 (234)
T ss_pred HHccc--------HHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHH
Confidence 99998 66666666652 12345567788899999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCChhH
Q 040440 305 LRKKDEAEKQFEKFRRLVPRNHPY 328 (355)
Q Consensus 305 ~g~~~~A~~~~~~~l~~~p~~~~~ 328 (355)
.|++++|..++++++...|.+...
T Consensus 182 ~~~~~~A~~~~~~~~~~~~~~~~~ 205 (234)
T TIGR02521 182 RGQYKDARAYLERYQQTYNQTAES 205 (234)
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHH
Confidence 999999999999999997765433
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.84 E-value=6.2e-18 Score=130.52 Aligned_cols=197 Identities=17% Similarity=0.135 Sum_probs=177.0
Q ss_pred hcc-CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHH
Q 040440 126 RED-VSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIK 204 (355)
Q Consensus 126 ~~~-~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 204 (355)
|-. +++..|..-++++++.+|++..+|..++.+|...|+.+.|.+.|++++.++|++.+++.+.|..++.+|++++|..
T Consensus 45 YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q 124 (250)
T COG3063 45 YLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQ 124 (250)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHH
Confidence 444 4999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhh--CCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHHHccCHHHHHHHH
Q 040440 205 GFEEILRK--DPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQIKVMESKHSEALRVY 281 (355)
Q Consensus 205 ~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 281 (355)
.|++++.. .+.....+.++|.|..+.|+ ++.|.+.+++ +..+++.......++...++.|+|-.|..++
T Consensus 125 ~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq--------~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~ 196 (250)
T COG3063 125 QFERALADPAYGEPSDTLENLGLCALKAGQ--------FDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYL 196 (250)
T ss_pred HHHHHHhCCCCCCcchhhhhhHHHHhhcCC--------chhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHH
Confidence 99999984 45667889999999999999 6666666655 5558888999999999999999999999999
Q ss_pred HHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHH
Q 040440 282 EELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHPYRE 330 (355)
Q Consensus 282 ~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~ 330 (355)
++.....+-....+.....+....|+-+.+..+=.+.....|....+..
T Consensus 197 ~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e~q~ 245 (250)
T COG3063 197 ERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEEYQT 245 (250)
T ss_pred HHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHh
Confidence 9998877777777777788999999999999998889999998766643
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.5e-18 Score=171.72 Aligned_cols=213 Identities=16% Similarity=0.131 Sum_probs=150.6
Q ss_pred ccccccchhhhhhhhhhhccC-CHHHHHHHHHHHHHcCCCCHHHHHHHHHH-----------------------------
Q 040440 109 AATVESTNESTKDTTSAREDV-SYEEKEKEIEQHLAANPNDIEALQTLMEV----------------------------- 158 (355)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~~l~~~p~~~~~~~~la~~----------------------------- 158 (355)
.|....++..++.. +... ++++|++.|+++++.+|++..++..++.+
T Consensus 381 ~P~~~~a~~~Lg~~---~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~ 457 (1157)
T PRK11447 381 DNTDSYAVLGLGDV---AMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIER 457 (1157)
T ss_pred CCCCHHHHHHHHHH---HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 34444444444444 4333 77777777777777777766655444333
Q ss_pred -------------HHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 040440 159 -------------RIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVM 225 (355)
Q Consensus 159 -------------~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 225 (355)
+...|++++|+..|+++++.+|++..+++.+|.+|...|++++|+..++++++..|+++..++.++.
T Consensus 458 ~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al 537 (1157)
T PRK11447 458 SLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGL 537 (1157)
T ss_pred HhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 3345777777777777777777777777777777777777777777777777777777777666666
Q ss_pred HHhccCchHHHHHHH-------------------------------------HHHHHHHHHhhccCCchHHHHHHHHHHH
Q 040440 226 AYDGSDKKLNEVEKR-------------------------------------IEKAMERCKKEKKKSDLRDFKLLIAQIK 268 (355)
Q Consensus 226 ~~~~~~~~~~~a~~~-------------------------------------~~~Al~~~~~~~~~~~~~~~~~~la~~~ 268 (355)
.+...++ .+++... +++|+.+++ ..|.+...+..+|.++
T Consensus 538 ~l~~~~~-~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~---~~p~~~~~~~~La~~~ 613 (1157)
T PRK11447 538 YLSGSDR-DRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLR---QQPPSTRIDLTLADWA 613 (1157)
T ss_pred HHHhCCC-HHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHH---hCCCCchHHHHHHHHH
Confidence 5555544 2222221 222333332 3566677788899999
Q ss_pred HHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhH
Q 040440 269 VMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHPY 328 (355)
Q Consensus 269 ~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 328 (355)
...|++++|+..|+++++.+|++..++..++.++...|++++|++.++++++..|++...
T Consensus 614 ~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~ 673 (1157)
T PRK11447 614 QQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNT 673 (1157)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHH
Confidence 999999999999999999999999999999999999999999999999999888877554
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.83 E-value=3e-18 Score=168.78 Aligned_cols=191 Identities=17% Similarity=0.286 Sum_probs=137.6
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 040440 130 SYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEI 209 (355)
Q Consensus 130 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 209 (355)
++++|+..|+++++.+|++..++..++.++...|++++|+..|+++++.+|.+..++..++.++...|++++|+..++++
T Consensus 480 ~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 559 (899)
T TIGR02917 480 DLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKA 559 (899)
T ss_pred CHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 66666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q 040440 210 LRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEE 288 (355)
Q Consensus 210 ~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 288 (355)
++.+|.+...+..++.++...|+ +++|+..+++ ....+.+...+..+|.++...|++++|+..|+++++..
T Consensus 560 ~~~~~~~~~~~~~l~~~~~~~~~--------~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 631 (899)
T TIGR02917 560 AELNPQEIEPALALAQYYLGKGQ--------LKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ 631 (899)
T ss_pred HHhCccchhHHHHHHHHHHHCCC--------HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 66666666666666666666666 6667777666 44567777888888999988999999999999988888
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhH
Q 040440 289 PRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHPY 328 (355)
Q Consensus 289 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 328 (355)
|.+...+..+|.++...|++++|..+|+++++..|++...
T Consensus 632 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 671 (899)
T TIGR02917 632 PDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEA 671 (899)
T ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHH
Confidence 8888888889999988999999999999988888876443
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.9e-19 Score=153.19 Aligned_cols=191 Identities=19% Similarity=0.238 Sum_probs=174.9
Q ss_pred hccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHH
Q 040440 126 REDVSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKG 205 (355)
Q Consensus 126 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 205 (355)
.+.+++.+|.-.|+.+++.+|++.++|..||.+....++-..|+..++++++++|++..++..||..|...|.-.+|+++
T Consensus 296 m~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~ 375 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKM 375 (579)
T ss_pred HhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHH
Confidence 45568999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHhhC-----------------------------------------C--CCHHHHHHHHHHHhccCchHHHHHHHHH
Q 040440 206 FEEILRKD-----------------------------------------P--LRVEAYHGLVMAYDGSDKKLNEVEKRIE 242 (355)
Q Consensus 206 ~~~~~~~~-----------------------------------------p--~~~~~~~~l~~~~~~~~~~~~~a~~~~~ 242 (355)
+.+.+... | .++++...||.+|...++ |+
T Consensus 376 L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~e--------fd 447 (579)
T KOG1125|consen 376 LDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGE--------FD 447 (579)
T ss_pred HHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchH--------HH
Confidence 88876542 2 345666778888888777 99
Q ss_pred HHHHHHHh-hccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 040440 243 KAMERCKK-EKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRL 321 (355)
Q Consensus 243 ~Al~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 321 (355)
+|+++|+. +...|.+..+|..||-.+....+.++|+..|++++++.|..+.++++||..|+.+|.|+||.++|-.++.+
T Consensus 448 raiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~m 527 (579)
T KOG1125|consen 448 RAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSM 527 (579)
T ss_pred HHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHh
Confidence 99999988 78899999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCC
Q 040440 322 VPR 324 (355)
Q Consensus 322 ~p~ 324 (355)
.++
T Consensus 528 q~k 530 (579)
T KOG1125|consen 528 QRK 530 (579)
T ss_pred hhc
Confidence 765
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.5e-18 Score=158.82 Aligned_cols=182 Identities=15% Similarity=0.078 Sum_probs=164.0
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 040440 130 SYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEI 209 (355)
Q Consensus 130 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 209 (355)
++++|+..++++++.+|++..++..+|.++...|++++|+..|+++++++|++..+++.+|.++...|++++|+..++++
T Consensus 319 ~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~A 398 (553)
T PRK12370 319 AMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINEC 398 (553)
T ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhh-cc-CCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 040440 210 LRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKE-KK-KSDLRDFKLLIAQIKVMESKHSEALRVYEELVKE 287 (355)
Q Consensus 210 ~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~-~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 287 (355)
++++|.+...++.++.++...|+ +++|+..+++. .. .+.....+..+|.+|...|++++|+..++++...
T Consensus 399 l~l~P~~~~~~~~~~~~~~~~g~--------~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~ 470 (553)
T PRK12370 399 LKLDPTRAAAGITKLWITYYHTG--------IDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ 470 (553)
T ss_pred HhcCCCChhhHHHHHHHHHhccC--------HHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc
Confidence 99999998877777777777888 78888887773 22 4677888999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 040440 288 EPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRL 321 (355)
Q Consensus 288 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 321 (355)
.|.+...+..++..|...|+ +|...+++.++.
T Consensus 471 ~~~~~~~~~~l~~~~~~~g~--~a~~~l~~ll~~ 502 (553)
T PRK12370 471 EITGLIAVNLLYAEYCQNSE--RALPTIREFLES 502 (553)
T ss_pred cchhHHHHHHHHHHHhccHH--HHHHHHHHHHHH
Confidence 99888899999999998884 777777776653
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.82 E-value=8.5e-18 Score=165.55 Aligned_cols=195 Identities=19% Similarity=0.246 Sum_probs=128.4
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 040440 130 SYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEI 209 (355)
Q Consensus 130 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 209 (355)
++++|+..++++++..|.+...|..+|.++...|++++|+..|+++++.+|.+...+..+|.++...|++++|+..|+++
T Consensus 582 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 661 (899)
T TIGR02917 582 QLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRA 661 (899)
T ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HhhCCCCHHHHHHHHHHHhccCchHHHH---------------------------HHHHHHHHHHHHh-hccCCchHHHH
Q 040440 210 LRKDPLRVEAYHGLVMAYDGSDKKLNEV---------------------------EKRIEKAMERCKK-EKKKSDLRDFK 261 (355)
Q Consensus 210 ~~~~p~~~~~~~~l~~~~~~~~~~~~~a---------------------------~~~~~~Al~~~~~-~~~~~~~~~~~ 261 (355)
++.+|++...+..++.++...|+ ++++ .+.+++|++.+++ ....+.. ..+
T Consensus 662 ~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~ 739 (899)
T TIGR02917 662 LELKPDNTEAQIGLAQLLLAAKR-TESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSS-QNA 739 (899)
T ss_pred HhcCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc-hHH
Confidence 77777777766666666666665 2111 1224444444444 2222222 444
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q 040440 262 LLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNH 326 (355)
Q Consensus 262 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~ 326 (355)
..++.++...|++++|++.++++++.+|++..+++.+|.++...|++++|+..|+++++..|++.
T Consensus 740 ~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~ 804 (899)
T TIGR02917 740 IKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNA 804 (899)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCH
Confidence 55556666666666666666666666666666666666666666666666666666666666553
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.4e-18 Score=145.92 Aligned_cols=199 Identities=17% Similarity=0.232 Sum_probs=176.9
Q ss_pred cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHH
Q 040440 128 DVSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFE 207 (355)
Q Consensus 128 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 207 (355)
.+++-+|.+.++.+|+.+|.+...|..++.+|...++-++-...|+++..++|+++++|+..|++++-+++|++|+..|+
T Consensus 339 ~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~ 418 (606)
T KOG0547|consen 339 KGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQ 418 (606)
T ss_pred cCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHH
Confidence 34889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 040440 208 EILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVK 286 (355)
Q Consensus 208 ~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 286 (355)
+++.++|++.-.+..++.+.++.++ +.++...|++ ....|..++++...|.++..++++++|++.|+.+++
T Consensus 419 Kai~L~pe~~~~~iQl~~a~Yr~~k--------~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~ 490 (606)
T KOG0547|consen 419 KAISLDPENAYAYIQLCCALYRQHK--------IAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE 490 (606)
T ss_pred HHhhcChhhhHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh
Confidence 9999999999999999999999988 7777777776 566899999999999999999999999999999999
Q ss_pred hCCC------ChHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCChhHHHHHHH
Q 040440 287 EEPR------DFRPYLCQGIIYT-LLRKKDEAEKQFEKFRRLVPRNHPYREYFVD 334 (355)
Q Consensus 287 ~~~~------~~~~~~~l~~~~~-~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~ 334 (355)
+.|. ++..+...|.+.. -.+++.+|+.+++++++++|........+..
T Consensus 491 LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq 545 (606)
T KOG0547|consen 491 LEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQ 545 (606)
T ss_pred hccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHH
Confidence 9998 5555655554443 3489999999999999999987554433333
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.3e-17 Score=160.64 Aligned_cols=192 Identities=10% Similarity=0.005 Sum_probs=178.2
Q ss_pred hccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHH
Q 040440 126 REDVSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKG 205 (355)
Q Consensus 126 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 205 (355)
...+++++|+..++++++.+|++...+..++......|++++|+..|+++++.+|+ ...+..+|.++.+.|++++|+..
T Consensus 553 l~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~ 631 (987)
T PRK09782 553 QAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSD 631 (987)
T ss_pred HHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHH
Confidence 34459999999999999999999888888777777889999999999999999996 88999999999999999999999
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 040440 206 FEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQIKVMESKHSEALRVYEEL 284 (355)
Q Consensus 206 ~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 284 (355)
|++++..+|++..++..+|.++...|+ +++|++.+++ ....|++..++..+|.++...|++++|+..|+++
T Consensus 632 l~~AL~l~Pd~~~a~~nLG~aL~~~G~--------~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~A 703 (987)
T PRK09782 632 LRAALELEPNNSNYQAALGYALWDSGD--------IAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLV 703 (987)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 999999999999999999999999999 6777777766 5568999999999999999999999999999999
Q ss_pred HHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q 040440 285 VKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNH 326 (355)
Q Consensus 285 l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~ 326 (355)
++.+|++..+....|.+.....+++.|.+.+++....+|+..
T Consensus 704 l~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~~~ 745 (987)
T PRK09782 704 IDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFDSS 745 (987)
T ss_pred HhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCccch
Confidence 999999999999999999999999999999999999988753
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.4e-18 Score=147.53 Aligned_cols=187 Identities=23% Similarity=0.224 Sum_probs=108.7
Q ss_pred hccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcC--CCchHHHHHHHHHHHHcCCHHHHH
Q 040440 126 REDVSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELE--PNEFEWQLLKAQVQSYAGESEAAI 203 (355)
Q Consensus 126 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~ 203 (355)
+...++++|++++++..+..+ ++..+...+.++...|+++++...++++.... +.+...|..+|.++.+.|+.++|+
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~ 166 (280)
T PF13429_consen 88 LQDGDPEEALKLAEKAYERDG-DPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKAL 166 (280)
T ss_dssp -------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHH
T ss_pred ccccccccccccccccccccc-ccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 445588889988888887664 46667777888888999999999998877654 566778888899999999999999
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHHHccCHHHHHHHHH
Q 040440 204 KGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQIKVMESKHSEALRVYE 282 (355)
Q Consensus 204 ~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 282 (355)
..|+++++.+|++..+...++.++...|+ ++++.+.++. ....+.++.++..+|.+|...|++++|+.+|+
T Consensus 167 ~~~~~al~~~P~~~~~~~~l~~~li~~~~--------~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~ 238 (280)
T PF13429_consen 167 RDYRKALELDPDDPDARNALAWLLIDMGD--------YDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLE 238 (280)
T ss_dssp HHHHHHHHH-TT-HHHHHHHHHHHCTTCH--------HHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHCCC--------hHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccc
Confidence 99999999999999998889988888888 6666666655 22235666677888999999999999999999
Q ss_pred HHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 040440 283 ELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRL 321 (355)
Q Consensus 283 ~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 321 (355)
++++.+|+|+..+..+|.++...|+.++|..+.++++..
T Consensus 239 ~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~ 277 (280)
T PF13429_consen 239 KALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQALRL 277 (280)
T ss_dssp HHHHHSTT-HHHHHHHHHHHT------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccc
Confidence 999999999999999999999999999999888887653
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.79 E-value=4.6e-17 Score=147.54 Aligned_cols=115 Identities=16% Similarity=0.157 Sum_probs=102.7
Q ss_pred hhhhhhhhccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCC
Q 040440 119 TKDTTSAREDVSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGE 198 (355)
Q Consensus 119 ~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 198 (355)
+...+..+.++++++|.+++.+++..+|.+..+|+.+|.+|-+.|+.++++..+-.+..++|.+.+.|..++....++|+
T Consensus 143 l~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~ 222 (895)
T KOG2076|consen 143 LGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGN 222 (895)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhccc
Confidence 33444456778999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCch
Q 040440 199 SEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKK 233 (355)
Q Consensus 199 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 233 (355)
+++|+-+|.++++.+|.+....+..+.+|.+.|+.
T Consensus 223 i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~ 257 (895)
T KOG2076|consen 223 INQARYCYSRAIQANPSNWELIYERSSLYQKTGDL 257 (895)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChH
Confidence 99999999999999999998888888888888874
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=99.79 E-value=8e-17 Score=133.29 Aligned_cols=174 Identities=21% Similarity=0.178 Sum_probs=142.5
Q ss_pred hccCCHHHHHHHHHHHHHcCCCCH---HHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchH---HHHHHHHHHHHc---
Q 040440 126 REDVSYEEKEKEIEQHLAANPNDI---EALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFE---WQLLKAQVQSYA--- 196 (355)
Q Consensus 126 ~~~~~~~~A~~~~~~~l~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~la~~~~~~--- 196 (355)
+..+++++|+..+++++..+|++. .+++.+|.++...|++++|+..++++++..|++.. +++.+|.++...
T Consensus 44 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~ 123 (235)
T TIGR03302 44 LDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDR 123 (235)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhccc
Confidence 445699999999999999998875 57899999999999999999999999999887765 688889988876
Q ss_pred -----CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHc
Q 040440 197 -----GESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVME 271 (355)
Q Consensus 197 -----g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~~ 271 (355)
|++++|++.|++++..+|++...+..+..+.... .. .......+|.+|...
T Consensus 124 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~------------~~------------~~~~~~~~a~~~~~~ 179 (235)
T TIGR03302 124 VDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLR------------NR------------LAGKELYVARFYLKR 179 (235)
T ss_pred ccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHH------------HH------------HHHHHHHHHHHHHHc
Confidence 7899999999999999999876654333221110 00 011234678999999
Q ss_pred cCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 040440 272 SKHSEALRVYEELVKEEPRD---FRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVP 323 (355)
Q Consensus 272 g~~~~A~~~~~~~l~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p 323 (355)
|++++|+..|++++...|+. ..+++.+|.++...|++++|..+++......|
T Consensus 180 g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 180 GAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred CChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 99999999999999997764 57999999999999999999999998877665
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.4e-16 Score=135.40 Aligned_cols=200 Identities=11% Similarity=0.054 Sum_probs=176.2
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCH--HHHHHHH
Q 040440 130 SYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQ-KLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGES--EAAIKGF 206 (355)
Q Consensus 130 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~--~~A~~~~ 206 (355)
..++|+..+.++++.+|++..+|...+.++...| ++++++..++++++.+|++..+|..++.++...|+. ++++.++
T Consensus 52 ~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~ 131 (320)
T PLN02789 52 RSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFT 131 (320)
T ss_pred CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHH
Confidence 7789999999999999999999999999999998 689999999999999999999999999999988874 7889999
Q ss_pred HHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHHHc---cCH----HHHH
Q 040440 207 EEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQIKVME---SKH----SEAL 278 (355)
Q Consensus 207 ~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~~~---g~~----~~A~ 278 (355)
+++++.+|++..+|...+.++...|+ ++++++.+.+ +..++.+..+|...+.+.... |.+ ++++
T Consensus 132 ~kal~~dpkNy~AW~~R~w~l~~l~~--------~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el 203 (320)
T PLN02789 132 RKILSLDAKNYHAWSHRQWVLRTLGG--------WEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSEL 203 (320)
T ss_pred HHHHHhCcccHHHHHHHHHHHHHhhh--------HHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHH
Confidence 99999999999999999999999988 7777777777 566889999999999888765 333 5789
Q ss_pred HHHHHHHHhCCCChHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHH
Q 040440 279 RVYEELVKEEPRDFRPYLCQGIIYTL----LRKKDEAEKQFEKFRRLVPRNHPYREYFVDNMV 337 (355)
Q Consensus 279 ~~~~~~l~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~ 337 (355)
.+..+++..+|++..+|+.++.++.. .++..+|...+.+++...|+......++.++..
T Consensus 204 ~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~ 266 (320)
T PLN02789 204 KYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLC 266 (320)
T ss_pred HHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHH
Confidence 99999999999999999999999988 456678999999999888887666555555554
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.77 E-value=6.7e-18 Score=143.37 Aligned_cols=200 Identities=19% Similarity=0.235 Sum_probs=114.2
Q ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHH
Q 040440 129 VSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEE 208 (355)
Q Consensus 129 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 208 (355)
+++++|+..|++++..++.++..+..++.+ ...+++++|+.+++++.+..+ ++..+.....++...|+++++...+++
T Consensus 58 ~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~~~l~~ 135 (280)
T PF13429_consen 58 GDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDGDPEEALKLAEKAYERDG-DPRYLLSALQLYYRLGDYDEAEELLEK 135 (280)
T ss_dssp --------------------------------------------------------------H-HHHTT-HHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccc-ccccccccccccccccccccc-ccchhhHHHHHHHHHhHHHHHHHHHHH
Confidence 389999999999999999988888888888 799999999999999987664 456677778889999999999999999
Q ss_pred HHhhC--CCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 040440 209 ILRKD--PLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELV 285 (355)
Q Consensus 209 ~~~~~--p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 285 (355)
+.... +.+...|..+|.++.+.|+ .++|++.+++ +...|++..+...++.++...|+++++.+.++...
T Consensus 136 ~~~~~~~~~~~~~~~~~a~~~~~~G~--------~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~ 207 (280)
T PF13429_consen 136 LEELPAAPDSARFWLALAEIYEQLGD--------PDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLL 207 (280)
T ss_dssp HHH-T---T-HHHHHHHHHHHHHCCH--------HHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHhccCCCCCHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHH
Confidence 87655 6788899999999999999 6666666666 55689999999999999999999999999999998
Q ss_pred HhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHH
Q 040440 286 KEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHPYREYFVDNMVA 338 (355)
Q Consensus 286 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~ 338 (355)
+..|.++..|..+|.++..+|++++|+.+|+++++.+|+|+.....+..++..
T Consensus 208 ~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~ 260 (280)
T PF13429_consen 208 KAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQ 260 (280)
T ss_dssp HH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT-
T ss_pred HHCcCHHHHHHHHHHHhcccccccccccccccccccccccccccccccccccc
Confidence 88888999999999999999999999999999999999997776555555443
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.1e-16 Score=151.48 Aligned_cols=199 Identities=11% Similarity=-0.008 Sum_probs=172.4
Q ss_pred hccCCHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCc----hHHHHHHHHHHHHcCCHH
Q 040440 126 REDVSYEEKEKEIEQHLAANPND-IEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNE----FEWQLLKAQVQSYAGESE 200 (355)
Q Consensus 126 ~~~~~~~~A~~~~~~~l~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~~la~~~~~~g~~~ 200 (355)
+..+++++|+..|+++++..+.. ..+...+|.+|...|++++|+.+|+++++.+|.+ ......++.++...|+++
T Consensus 248 l~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~ 327 (765)
T PRK10049 248 LARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYP 327 (765)
T ss_pred HHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHH
Confidence 55569999999999999876432 2244446999999999999999999999888765 346777888889999999
Q ss_pred HHHHHHHHHHhhCCC---------------CHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hccCCchHHHHHHH
Q 040440 201 AAIKGFEEILRKDPL---------------RVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLI 264 (355)
Q Consensus 201 ~A~~~~~~~~~~~p~---------------~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~l 264 (355)
+|+..++++....|. ...++..++.++...|+ +++|++.+++ ....|.+..++..+
T Consensus 328 eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~--------~~eA~~~l~~al~~~P~n~~l~~~l 399 (765)
T PRK10049 328 GALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSND--------LPQAEMRARELAYNAPGNQGLRIDY 399 (765)
T ss_pred HHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 999999999998763 23467788999999999 8888888877 56689999999999
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHH
Q 040440 265 AQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHPYREYF 332 (355)
Q Consensus 265 a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~ 332 (355)
|.++...|++++|++.+++++..+|++..+++.+|.++...|++++|+..++++++..|++.....+-
T Consensus 400 A~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~~~~ 467 (765)
T PRK10049 400 ASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQRLA 467 (765)
T ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999997664443
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=2e-17 Score=133.83 Aligned_cols=196 Identities=13% Similarity=0.127 Sum_probs=173.9
Q ss_pred hccC-CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHH
Q 040440 126 REDV-SYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIK 204 (355)
Q Consensus 126 ~~~~-~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 204 (355)
|.+. +...|+..+.+.++..|.++..+..++.++-.++++++|+++|+.+++.+|.+.++...+|.-|+..++.+-|+.
T Consensus 266 Y~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~Alr 345 (478)
T KOG1129|consen 266 YQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALR 345 (478)
T ss_pred HHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHH
Confidence 7777 889999999999999999999999999999999999999999999999999999998888999999999999999
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 040440 205 GFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEEL 284 (355)
Q Consensus 205 ~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 284 (355)
+|++.+++.-.+++.+.++|.|+...++ ++-++..++.|+... .......++|+++|.+....|++.-|.++|+-+
T Consensus 346 yYRRiLqmG~~speLf~NigLCC~yaqQ-~D~~L~sf~RAlsta---t~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrla 421 (478)
T KOG1129|consen 346 YYRRILQMGAQSPELFCNIGLCCLYAQQ-IDLVLPSFQRALSTA---TQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLA 421 (478)
T ss_pred HHHHHHHhcCCChHHHhhHHHHHHhhcc-hhhhHHHHHHHHhhc---cCcchhhhhhhccceeEEeccchHHHHHHHHHH
Confidence 9999999999999999999999988887 444444444444432 335566789999999999999999999999999
Q ss_pred HHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 040440 285 VKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRN 325 (355)
Q Consensus 285 l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~ 325 (355)
+..++++.++++++|.+..+.|+.++|..++..+....|+-
T Consensus 422 L~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m 462 (478)
T KOG1129|consen 422 LTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDM 462 (478)
T ss_pred hccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCccc
Confidence 99999999999999999999999999999999999998874
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=6.9e-16 Score=130.29 Aligned_cols=202 Identities=14% Similarity=0.078 Sum_probs=178.7
Q ss_pred hhccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHH
Q 040440 125 AREDVSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIK 204 (355)
Q Consensus 125 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 204 (355)
.|..+++++|.+.|++++..+....++++++|..+-..|+.++|+++|-++..+--++.++++.++.+|..+.+..+|++
T Consensus 500 ~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie 579 (840)
T KOG2003|consen 500 AFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIE 579 (840)
T ss_pred eeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHH
Confidence 46677999999999999999999999999999999999999999999999988878899999999999999999999999
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHHHccCHHHHHHHHHH
Q 040440 205 GFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQIKVMESKHSEALRVYEE 283 (355)
Q Consensus 205 ~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 283 (355)
++-++..+.|+++.++..++.+|-+.|+ -.+|.++.-. -.-.|.+.+..-++|..|+...-+++|+.+|++
T Consensus 580 ~~~q~~slip~dp~ilskl~dlydqegd--------ksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ek 651 (840)
T KOG2003|consen 580 LLMQANSLIPNDPAILSKLADLYDQEGD--------KSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEK 651 (840)
T ss_pred HHHHhcccCCCCHHHHHHHHHHhhcccc--------hhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 9999999999999999999999999998 5555554433 455788888888999999999999999999999
Q ss_pred HHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHH
Q 040440 284 LVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHPYREYFVD 334 (355)
Q Consensus 284 ~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~ 334 (355)
+--+.|+.......++.|+.+.|+|++|.+.|+..-...|.+.+...++.+
T Consensus 652 aaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvr 702 (840)
T KOG2003|consen 652 AALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVR 702 (840)
T ss_pred HHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 988888777777778899999999999999999999989988665554443
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=3e-16 Score=136.11 Aligned_cols=175 Identities=17% Similarity=0.181 Sum_probs=153.0
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCc
Q 040440 153 QTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDK 232 (355)
Q Consensus 153 ~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 232 (355)
+..|..+++.|+..+|.-.|+.++..+|.+.++|..||.+....++-..|+..++++++++|++.+++..|+..|...|.
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~ 368 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGL 368 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhh
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999998886
Q ss_pred hHHHHHH----------------------------------HHHHHHHHHHh-hccCC--chHHHHHHHHHHHHHccCHH
Q 040440 233 KLNEVEK----------------------------------RIEKAMERCKK-EKKKS--DLRDFKLLIAQIKVMESKHS 275 (355)
Q Consensus 233 ~~~~a~~----------------------------------~~~~Al~~~~~-~~~~~--~~~~~~~~la~~~~~~g~~~ 275 (355)
. ..|.. .+....++|-+ ....+ .++++...||.+|...|+|+
T Consensus 369 q-~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efd 447 (579)
T KOG1125|consen 369 Q-NQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFD 447 (579)
T ss_pred H-HHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHH
Confidence 3 22222 22222333333 23333 78889999999999999999
Q ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhH
Q 040440 276 EALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHPY 328 (355)
Q Consensus 276 ~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 328 (355)
+|+.+|+.++...|+|...|+.||-.+..-.+.++|+..|++++++.|.....
T Consensus 448 raiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~ 500 (579)
T KOG1125|consen 448 RAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRV 500 (579)
T ss_pred HHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeee
Confidence 99999999999999999999999999999999999999999999999987444
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.8e-15 Score=122.35 Aligned_cols=193 Identities=17% Similarity=0.195 Sum_probs=173.0
Q ss_pred hccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHH
Q 040440 126 REDVSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKG 205 (355)
Q Consensus 126 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 205 (355)
..++++.+|+..|..+++.+|++..+++..|.+|..+|+-..|+.-+.+++++.|+...+....|.++.++|++++|...
T Consensus 49 la~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele~A~~D 128 (504)
T KOG0624|consen 49 LARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGELEQAEAD 128 (504)
T ss_pred HHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccHHHHHHH
Confidence 44568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCH---HHHHHHH------------HHHhccCchHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHH
Q 040440 206 FEEILRKDPLRV---EAYHGLV------------MAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQIKV 269 (355)
Q Consensus 206 ~~~~~~~~p~~~---~~~~~l~------------~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~ 269 (355)
|+.++..+|.+. +++..++ ..+...|+ +..+++.... +...+++..++...+.+|.
T Consensus 129 F~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD--------~~~ai~~i~~llEi~~Wda~l~~~Rakc~i 200 (504)
T KOG0624|consen 129 FDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGD--------CQNAIEMITHLLEIQPWDASLRQARAKCYI 200 (504)
T ss_pred HHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCc--------hhhHHHHHHHHHhcCcchhHHHHHHHHHHH
Confidence 999999998543 2322222 22334455 7788888777 6778999999999999999
Q ss_pred HccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q 040440 270 MESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNH 326 (355)
Q Consensus 270 ~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~ 326 (355)
..|+...|+..++.+-++..++.+.++.++.+++..|+.+.++...+++++++|+..
T Consensus 201 ~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK 257 (504)
T KOG0624|consen 201 AEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHK 257 (504)
T ss_pred hcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchh
Confidence 999999999999999999999999999999999999999999999999999999873
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.4e-15 Score=128.02 Aligned_cols=177 Identities=15% Similarity=0.063 Sum_probs=140.2
Q ss_pred CHHHHHHHHHHHHHcCC---C-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHH
Q 040440 130 SYEEKEKEIEQHLAANP---N-DIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKG 205 (355)
Q Consensus 130 ~~~~A~~~~~~~l~~~p---~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 205 (355)
..+.++..+.+++...+ . ....|+.+|.+|...|++++|+..|+++++.+|+++.+|..+|.++...|++++|+..
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~ 120 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEA 120 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 56778999999997444 3 4678999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 040440 206 FEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQIKVMESKHSEALRVYEEL 284 (355)
Q Consensus 206 ~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 284 (355)
|+++++++|++..++..+|.++...|+ +++|++.+++ ....|.+... .....+....+++++|+..+++.
T Consensus 121 ~~~Al~l~P~~~~a~~~lg~~l~~~g~--------~~eA~~~~~~al~~~P~~~~~-~~~~~l~~~~~~~~~A~~~l~~~ 191 (296)
T PRK11189 121 FDSVLELDPTYNYAYLNRGIALYYGGR--------YELAQDDLLAFYQDDPNDPYR-ALWLYLAESKLDPKQAKENLKQR 191 (296)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHHhCCCCHHH-HHHHHHHHccCCHHHHHHHHHHH
Confidence 999999999999999999999999999 7777777766 4446665532 22223445678999999999887
Q ss_pred HHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 040440 285 VKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFR 319 (355)
Q Consensus 285 l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 319 (355)
+...+.+. |. .+.++...|+..++ ..++.+.
T Consensus 192 ~~~~~~~~--~~-~~~~~~~lg~~~~~-~~~~~~~ 222 (296)
T PRK11189 192 YEKLDKEQ--WG-WNIVEFYLGKISEE-TLMERLK 222 (296)
T ss_pred HhhCCccc--cH-HHHHHHHccCCCHH-HHHHHHH
Confidence 75543332 22 45666667777554 3444444
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.4e-15 Score=132.62 Aligned_cols=193 Identities=15% Similarity=0.117 Sum_probs=150.0
Q ss_pred hhccCCHHHHHHHHHHHHHcCCCCHHHH-HHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHH
Q 040440 125 AREDVSYEEKEKEIEQHLAANPNDIEAL-QTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAI 203 (355)
Q Consensus 125 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~-~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 203 (355)
+...++++.|.+.++++.+.+|++.... ...+.++...|++++|+..++++.+.+|+++.++..++.+|...|++++|+
T Consensus 128 A~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~ 207 (398)
T PRK10747 128 AQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLL 207 (398)
T ss_pred HHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHH
Confidence 3666699999999999999888875433 345889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCC------------------------------------------CHHHHHHHHHHHhccCchHHHHHHHH
Q 040440 204 KGFEEILRKDPL------------------------------------------RVEAYHGLVMAYDGSDKKLNEVEKRI 241 (355)
Q Consensus 204 ~~~~~~~~~~p~------------------------------------------~~~~~~~l~~~~~~~~~~~~~a~~~~ 241 (355)
+.+.++.+.... ++.....++..+...|+ .
T Consensus 208 ~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~--------~ 279 (398)
T PRK10747 208 DILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDD--------H 279 (398)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCC--------H
Confidence 777776654332 33334444555555555 6
Q ss_pred HHHHHHHHhhccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 040440 242 EKAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRL 321 (355)
Q Consensus 242 ~~Al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 321 (355)
++|.+.+++.-..+.+..+....+.+ ..++.+++++.+++.++.+|+++..+..+|.++...|++++|.++|+++++.
T Consensus 280 ~~A~~~L~~~l~~~~~~~l~~l~~~l--~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~ 357 (398)
T PRK10747 280 DTAQQIILDGLKRQYDERLVLLIPRL--KTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ 357 (398)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHhhc--cCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 77777777733344455444444443 4488999999999999999999999999999999999999999999999999
Q ss_pred CCCChh
Q 040440 322 VPRNHP 327 (355)
Q Consensus 322 ~p~~~~ 327 (355)
.|++..
T Consensus 358 ~P~~~~ 363 (398)
T PRK10747 358 RPDAYD 363 (398)
T ss_pred CCCHHH
Confidence 998644
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=4.4e-15 Score=142.46 Aligned_cols=205 Identities=12% Similarity=0.105 Sum_probs=162.2
Q ss_pred hhhhhhhhhhhccC-CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHH
Q 040440 116 NESTKDTTSAREDV-SYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQS 194 (355)
Q Consensus 116 ~~~~~~~~~~~~~~-~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 194 (355)
+..++.. +... ++++|++.++++++.+|.+..++..++.++...|++++|+..++++++.+|++.. +..+|.++.
T Consensus 52 ~~~lA~~---~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~ 127 (765)
T PRK10049 52 YAAVAVA---YRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYK 127 (765)
T ss_pred HHHHHHH---HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHH
Confidence 4444443 4444 9999999999999999999999999999999999999999999999999999999 999999999
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHH-----------------------------------
Q 040440 195 YAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEK----------------------------------- 239 (355)
Q Consensus 195 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~----------------------------------- 239 (355)
..|++++|+..++++++..|++..++..++.++...+. .+.|+.
T Consensus 128 ~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~-~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~ 206 (765)
T PRK10049 128 RAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRL-SAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEK 206 (765)
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC-hHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChh
Confidence 99999999999999999999999999999998876655 332221
Q ss_pred -HH---HHHHHHHHhh----ccCCchH----HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCh-HHHHHHHHHHHHcC
Q 040440 240 -RI---EKAMERCKKE----KKKSDLR----DFKLLIAQIKVMESKHSEALRVYEELVKEEPRDF-RPYLCQGIIYTLLR 306 (355)
Q Consensus 240 -~~---~~Al~~~~~~----~~~~~~~----~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~-~~~~~l~~~~~~~g 306 (355)
.+ ++|++.++.. ...|... .++......+...|++++|+..|+++++..+..+ .+...+|.+|...|
T Consensus 207 ~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g 286 (765)
T PRK10049 207 ERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLH 286 (765)
T ss_pred HHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcC
Confidence 12 5566666552 1223221 1222212234677999999999999998864322 24444699999999
Q ss_pred CHHHHHHHHHHHHHhCCCC
Q 040440 307 KKDEAEKQFEKFRRLVPRN 325 (355)
Q Consensus 307 ~~~~A~~~~~~~l~~~p~~ 325 (355)
++++|+.+|+++++.+|.+
T Consensus 287 ~~e~A~~~l~~~l~~~p~~ 305 (765)
T PRK10049 287 QPEKAQSILTELFYHPETI 305 (765)
T ss_pred CcHHHHHHHHHHhhcCCCC
Confidence 9999999999999888765
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.1e-15 Score=139.78 Aligned_cols=196 Identities=15% Similarity=0.151 Sum_probs=134.4
Q ss_pred hccCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcC---CHHH
Q 040440 126 REDVSYEEKEKEIEQHLAANPN-DIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAG---ESEA 201 (355)
Q Consensus 126 ~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~ 201 (355)
|.+++|-.|+.+|+.++..+|. -++....+|.+++++|+.+.|+..|+++++++|.+..++..||.+-.... .+..
T Consensus 175 ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~ 254 (1018)
T KOG2002|consen 175 YNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKK 254 (1018)
T ss_pred hccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHH
Confidence 5555666666666665555554 23444555555566666666666666666666655555555554433332 3445
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhh----ccCCchHHHHHHHHHHHHHccCHHHH
Q 040440 202 AIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKE----KKKSDLRDFKLLIAQIKVMESKHSEA 277 (355)
Q Consensus 202 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~----~~~~~~~~~~~~la~~~~~~g~~~~A 277 (355)
+...+.++...++.++.+...++..++..|+ |..+..+.... ...+.....++.+|+.|..+|+|++|
T Consensus 255 ~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~d--------y~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA 326 (1018)
T KOG2002|consen 255 GVQLLQRAYKENNENPVALNHLANHFYFKKD--------YERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKA 326 (1018)
T ss_pred HHHHHHHHHhhcCCCcHHHHHHHHHHhhccc--------HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHH
Confidence 5555555555566666666666666666555 66666655551 22234455689999999999999999
Q ss_pred HHHHHHHHHhCCCC-hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHH
Q 040440 278 LRVYEELVKEEPRD-FRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHPYR 329 (355)
Q Consensus 278 ~~~~~~~l~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~ 329 (355)
..+|.++++.++++ .-.++.+|.+|...|+++.|..+|+++++..|++....
T Consensus 327 ~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm 379 (1018)
T KOG2002|consen 327 FKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETM 379 (1018)
T ss_pred HHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHH
Confidence 99999999999988 77899999999999999999999999999999985553
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.71 E-value=3e-15 Score=124.91 Aligned_cols=198 Identities=19% Similarity=0.218 Sum_probs=134.6
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 040440 130 SYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEI 209 (355)
Q Consensus 130 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 209 (355)
++++-..+....+..+.....-|+--+...+..+++..|+.+-+++|+.+|.+..++...|.++...|+.++|+-.|+.+
T Consensus 281 ~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~A 360 (564)
T KOG1174|consen 281 GCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTA 360 (564)
T ss_pred CHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHH
Confidence 45555555555555444444445555555555555555555555555555555555555555555555555555555555
Q ss_pred HhhCCCCHHHHHHHHHHHhccCchHHHHH-----------------------------HHHHHHHHHHHh-hccCCchHH
Q 040440 210 LRKDPLRVEAYHGLVMAYDGSDKKLNEVE-----------------------------KRIEKAMERCKK-EKKKSDLRD 259 (355)
Q Consensus 210 ~~~~p~~~~~~~~l~~~~~~~~~~~~~a~-----------------------------~~~~~Al~~~~~-~~~~~~~~~ 259 (355)
..+.|-..+.|.++..+|...|. ..+|. .--++|..++++ +...|....
T Consensus 361 q~Lap~rL~~Y~GL~hsYLA~~~-~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~ 439 (564)
T KOG1174|consen 361 QMLAPYRLEIYRGLFHSYLAQKR-FKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTP 439 (564)
T ss_pred HhcchhhHHHHHHHHHHHHhhch-HHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHH
Confidence 55555555555555555555544 22220 113667777776 677899999
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHH
Q 040440 260 FKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHPYR 329 (355)
Q Consensus 260 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~ 329 (355)
+...+|.+....|.+++++..+++.+...+ |...+..+|.++...+.+++|.++|..++.++|++....
T Consensus 440 AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~-D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl 508 (564)
T KOG1174|consen 440 AVNLIAELCQVEGPTKDIIKLLEKHLIIFP-DVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTL 508 (564)
T ss_pred HHHHHHHHHHhhCccchHHHHHHHHHhhcc-ccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHH
Confidence 999999999999999999999999999988 667889999999999999999999999999999984443
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.1e-15 Score=119.99 Aligned_cols=133 Identities=10% Similarity=0.097 Sum_probs=110.9
Q ss_pred ccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH-hccCchHHHHHHH
Q 040440 162 SQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAY-DGSDKKLNEVEKR 240 (355)
Q Consensus 162 ~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~-~~~~~~~~~a~~~ 240 (355)
.++.++++..++++++.+|++...|..+|.+|...|++++|+..|+++++++|++...+..++.++ ...|+
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~-------- 123 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQ-------- 123 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCC--------
Confidence 677788888888888888988888999999888999999999999999998888888887777754 33332
Q ss_pred HHHHHHHHHhhccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 040440 241 IEKAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRR 320 (355)
Q Consensus 241 ~~~Al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 320 (355)
..+++|.+.++++++.+|++..+++.+|.++...|++++|+.+|+++++
T Consensus 124 -------------------------------~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~ 172 (198)
T PRK10370 124 -------------------------------HMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLD 172 (198)
T ss_pred -------------------------------CCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 2368899999999999999999999999999999999999999999999
Q ss_pred hCCCChhHHHHHH
Q 040440 321 LVPRNHPYREYFV 333 (355)
Q Consensus 321 ~~p~~~~~~~~~~ 333 (355)
..|.+..-...+.
T Consensus 173 l~~~~~~r~~~i~ 185 (198)
T PRK10370 173 LNSPRVNRTQLVE 185 (198)
T ss_pred hCCCCccHHHHHH
Confidence 9887766555553
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=99.70 E-value=4.6e-15 Score=126.11 Aligned_cols=174 Identities=13% Similarity=0.090 Sum_probs=149.4
Q ss_pred HHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHH
Q 040440 159 RIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAG-ESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEV 237 (355)
Q Consensus 159 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a 237 (355)
+...+++++|+..+.++++++|++..+|..++.++..+| ++++++..++++++.+|++..+|+..+.++...++..
T Consensus 47 l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~--- 123 (320)
T PLN02789 47 YASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDA--- 123 (320)
T ss_pred HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchh---
Confidence 445678899999999999999999999999999999998 6899999999999999999999999998888777521
Q ss_pred HHHHHHHHHHHHh-hccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc---CCH----H
Q 040440 238 EKRIEKAMERCKK-EKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLL---RKK----D 309 (355)
Q Consensus 238 ~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~---g~~----~ 309 (355)
++++++++++ +..++.+..+|...+.++...|++++|+++++++++.+|.+..+|+.++.+.... |.+ +
T Consensus 124 ---~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e 200 (320)
T PLN02789 124 ---ANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRD 200 (320)
T ss_pred ---hHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHH
Confidence 2344555544 5568999999999999999999999999999999999999999999999998876 333 5
Q ss_pred HHHHHHHHHHHhCCCChhHHHHHHHHHHH
Q 040440 310 EAEKQFEKFRRLVPRNHPYREYFVDNMVA 338 (355)
Q Consensus 310 ~A~~~~~~~l~~~p~~~~~~~~~~~~~~~ 338 (355)
+++.+..+++.++|+|.....++..++..
T Consensus 201 ~el~y~~~aI~~~P~N~SaW~Yl~~ll~~ 229 (320)
T PLN02789 201 SELKYTIDAILANPRNESPWRYLRGLFKD 229 (320)
T ss_pred HHHHHHHHHHHhCCCCcCHHHHHHHHHhc
Confidence 78889999999999997776666666543
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.3e-15 Score=114.94 Aligned_cols=126 Identities=15% Similarity=0.060 Sum_probs=96.7
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 040440 135 EKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDP 214 (355)
Q Consensus 135 ~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p 214 (355)
...++++++.+|++ +..+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+..|+++++.+|
T Consensus 13 ~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p 89 (144)
T PRK15359 13 EDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA 89 (144)
T ss_pred HHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 56788888888764 556788888888888888888888888888888888888888888888888888888888888
Q ss_pred CCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHH
Q 040440 215 LRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRP 294 (355)
Q Consensus 215 ~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~ 294 (355)
+++.+++.+|.++. ..|++++|+..|+++++..|+++..
T Consensus 90 ~~~~a~~~lg~~l~-----------------------------------------~~g~~~eAi~~~~~Al~~~p~~~~~ 128 (144)
T PRK15359 90 SHPEPVYQTGVCLK-----------------------------------------MMGEPGLAREAFQTAIKMSYADASW 128 (144)
T ss_pred CCcHHHHHHHHHHH-----------------------------------------HcCCHHHHHHHHHHHHHhCCCChHH
Confidence 88777766666554 4456667777777777777777777
Q ss_pred HHHHHHHHHH
Q 040440 295 YLCQGIIYTL 304 (355)
Q Consensus 295 ~~~l~~~~~~ 304 (355)
+..++.+...
T Consensus 129 ~~~~~~~~~~ 138 (144)
T PRK15359 129 SEIRQNAQIM 138 (144)
T ss_pred HHHHHHHHHH
Confidence 7666665543
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.5e-15 Score=132.43 Aligned_cols=198 Identities=19% Similarity=0.137 Sum_probs=164.2
Q ss_pred hhhccC-CHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHc--------CCCchHHH
Q 040440 124 SAREDV-SYEEKEKEIEQHLAA--------NPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIEL--------EPNEFEWQ 186 (355)
Q Consensus 124 ~~~~~~-~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~ 186 (355)
..|... +|++|+..++.+++. .|.-......+|.+|...+++++|+.+|++++.+ +|....++
T Consensus 207 ~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l 286 (508)
T KOG1840|consen 207 EMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATL 286 (508)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 347666 999999999999987 4444455566999999999999999999999876 33444579
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCC-----CC---HHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh--hccCCc
Q 040440 187 LLKAQVQSYAGESEAAIKGFEEILRKDP-----LR---VEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK--EKKKSD 256 (355)
Q Consensus 187 ~~la~~~~~~g~~~~A~~~~~~~~~~~p-----~~---~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~--~~~~~~ 256 (355)
.+|+.+|...|++++|..++++++++.. .. ...+..++.++..+++ ++++..++.++++++.. ...++.
T Consensus 287 ~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~-~Eea~~l~q~al~i~~~~~g~~~~~ 365 (508)
T KOG1840|consen 287 NNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNE-YEEAKKLLQKALKIYLDAPGEDNVN 365 (508)
T ss_pred HHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcc-hhHHHHHHHHHHHHHHhhccccchH
Confidence 9999999999999999999999998732 22 3446678888888887 99999999999999886 344456
Q ss_pred hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC--------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 040440 257 LRDFKLLIAQIKVMESKHSEALRVYEELVKEEP--------RDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLV 322 (355)
Q Consensus 257 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~--------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 322 (355)
...++..+|.+|..+|++++|.+.|++++.+.. .....+..+|..|.+++++++|...|.++..+.
T Consensus 366 ~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 366 LAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred HHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 788899999999999999999999999997642 234577899999999999999999999987753
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.9e-14 Score=116.55 Aligned_cols=187 Identities=16% Similarity=0.167 Sum_probs=159.8
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCch-----HHHHHHHHHHHHcCCHHHHHH
Q 040440 130 SYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEF-----EWQLLKAQVQSYAGESEAAIK 204 (355)
Q Consensus 130 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~la~~~~~~g~~~~A~~ 204 (355)
+.++|+..|.++++.+|+..++...+|..|...|+.|.|+.+-+..++. |+.. .+...+|.-|...|-++.|.+
T Consensus 50 Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s-pdlT~~qr~lAl~qL~~Dym~aGl~DRAE~ 128 (389)
T COG2956 50 QPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES-PDLTFEQRLLALQQLGRDYMAAGLLDRAED 128 (389)
T ss_pred CcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 7799999999999999999999999999999999999999998877654 4332 368889999999999999999
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh---hccC---CchHHHHHHHHHHHHHccCHHHHH
Q 040440 205 GFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK---EKKK---SDLRDFKLLIAQIKVMESKHSEAL 278 (355)
Q Consensus 205 ~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~---~~~~---~~~~~~~~~la~~~~~~g~~~~A~ 278 (355)
.|....+...--..+...+..+|....+ +++||+..++ .... .....++..++..+....+.++|+
T Consensus 129 ~f~~L~de~efa~~AlqqLl~IYQ~tre--------W~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~ 200 (389)
T COG2956 129 IFNQLVDEGEFAEGALQQLLNIYQATRE--------WEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRAR 200 (389)
T ss_pred HHHHHhcchhhhHHHHHHHHHHHHHhhH--------HHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHH
Confidence 9999988666667788889999988887 8888888876 2222 233455778888888889999999
Q ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 040440 279 RVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRN 325 (355)
Q Consensus 279 ~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~ 325 (355)
..+.++++.+|+...+-..+|.++...|+|+.|++.++.+++.+|+.
T Consensus 201 ~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~y 247 (389)
T COG2956 201 ELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEY 247 (389)
T ss_pred HHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHH
Confidence 99999999999999999999999999999999999999999988864
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.69 E-value=2e-14 Score=128.31 Aligned_cols=201 Identities=15% Similarity=0.112 Sum_probs=119.3
Q ss_pred hccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCch-HHHHHHHHHHHHcCCHHHHHH
Q 040440 126 REDVSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEF-EWQLLKAQVQSYAGESEAAIK 204 (355)
Q Consensus 126 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~ 204 (355)
+..++++.|.+.+.++.+..|+....+...|.++...|+++.|..+++++.+..|+.. .+....+.++...|++++|+.
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~ 174 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARH 174 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHH
Confidence 4445666666666666666666666666666666666666666666666666666553 344445666666666666666
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHH-------------------------------HHHHHh-hc
Q 040440 205 GFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKA-------------------------------MERCKK-EK 252 (355)
Q Consensus 205 ~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A-------------------------------l~~~~~-~~ 252 (355)
.++++.+..|+++.++..++.++...|+ ++++...+++. .+.+.. ..
T Consensus 175 ~l~~l~~~~P~~~~~l~ll~~~~~~~~d-~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~ 253 (409)
T TIGR00540 175 GVDKLLEMAPRHKEVLKLAEEAYIRSGA-WQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWK 253 (409)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 6666666666666666666666666665 33221111100 011111 11
Q ss_pred cCC----chHHHHHHHHHHHHHccCHHHHHHHHHHHHH------------------------------------hCCCCh
Q 040440 253 KKS----DLRDFKLLIAQIKVMESKHSEALRVYEELVK------------------------------------EEPRDF 292 (355)
Q Consensus 253 ~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~------------------------------------~~~~~~ 292 (355)
..| ++..++..++..+...|++++|++.++++++ .+|+++
T Consensus 254 ~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~ 333 (409)
T TIGR00540 254 NQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKP 333 (409)
T ss_pred HCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCCh
Confidence 122 3455566666666666666666666655554 445555
Q ss_pred --HHHHHHHHHHHHcCCHHHHHHHHH--HHHHhCCCChh
Q 040440 293 --RPYLCQGIIYTLLRKKDEAEKQFE--KFRRLVPRNHP 327 (355)
Q Consensus 293 --~~~~~l~~~~~~~g~~~~A~~~~~--~~l~~~p~~~~ 327 (355)
.....+|.++.+.|++++|.++|+ .+++..|++..
T Consensus 334 ~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~ 372 (409)
T TIGR00540 334 KCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND 372 (409)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH
Confidence 556677888888888888888888 46667776544
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.6e-14 Score=128.26 Aligned_cols=185 Identities=13% Similarity=0.111 Sum_probs=157.3
Q ss_pred hccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcC--------------------------
Q 040440 126 REDVSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELE-------------------------- 179 (355)
Q Consensus 126 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-------------------------- 179 (355)
...+++++|+..++++.+.+|+++.++..++.+|...|+|++|++.+.++.+..
T Consensus 164 l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~ 243 (398)
T PRK10747 164 LARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQ 243 (398)
T ss_pred HHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 334599999999999999999999999999999999999999997777665432
Q ss_pred ----------------CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHH
Q 040440 180 ----------------PNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEK 243 (355)
Q Consensus 180 ----------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~ 243 (355)
|+++.+...++..+...|+.++|.+.++++++. +.++.....++.+ ..++ .++
T Consensus 244 ~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~-~~~~~l~~l~~~l--~~~~--------~~~ 312 (398)
T PRK10747 244 GSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR-QYDERLVLLIPRL--KTNN--------PEQ 312 (398)
T ss_pred CHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCHHHHHHHhhc--cCCC--------hHH
Confidence 234455667788999999999999999999994 5566554444444 3366 888
Q ss_pred HHHHHHh-hccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 040440 244 AMERCKK-EKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLV 322 (355)
Q Consensus 244 Al~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 322 (355)
+++.+++ .+..|++...+..+|.++...|++++|.++|+++++..|++ ..+..++.++.+.|+.++|.++|++++.+.
T Consensus 313 al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~-~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 313 LEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDA-YDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 8888888 78899999999999999999999999999999999999954 556789999999999999999999998764
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.4e-14 Score=116.95 Aligned_cols=213 Identities=18% Similarity=0.159 Sum_probs=175.1
Q ss_pred hhhccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHH
Q 040440 124 SAREDVSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAI 203 (355)
Q Consensus 124 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 203 (355)
+.+..+|...+++....+++..|-++..+...+.+|...|+...|+.-++.+-++..++.+.++.++.+++..|+.+.++
T Consensus 164 s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL 243 (504)
T KOG0624|consen 164 SASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSL 243 (504)
T ss_pred HHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHH
Confidence 44666699999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCCHHHHHHHHH---HHhccCchHHHH--HHHHHHHHHHHHh-hccCCchHHH----HHHHHHHHHHccC
Q 040440 204 KGFEEILRKDPLRVEAYHGLVM---AYDGSDKKLNEV--EKRIEKAMERCKK-EKKKSDLRDF----KLLIAQIKVMESK 273 (355)
Q Consensus 204 ~~~~~~~~~~p~~~~~~~~l~~---~~~~~~~~~~~a--~~~~~~Al~~~~~-~~~~~~~~~~----~~~la~~~~~~g~ 273 (355)
...+++++++|++...+-..-. +-..... .+.+ .+.|.++++..++ +...|....+ ...+..|+..-|+
T Consensus 244 ~~iRECLKldpdHK~Cf~~YKklkKv~K~les-~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~ 322 (504)
T KOG0624|consen 244 KEIRECLKLDPDHKLCFPFYKKLKKVVKSLES-AEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQ 322 (504)
T ss_pred HHHHHHHccCcchhhHHHHHHHHHHHHHHHHH-HHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCC
Confidence 9999999999998765432111 1111000 1111 2446777777777 4555553333 4456788889999
Q ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHH
Q 040440 274 HSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHPYREYFVDNMV 337 (355)
Q Consensus 274 ~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~ 337 (355)
+.+|++.+.+++..+|++..++...+.+|.....|+.|+.-|+++.+.++++...+.-+...--
T Consensus 323 ~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reGle~Akr 386 (504)
T KOG0624|consen 323 FGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREGLERAKR 386 (504)
T ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999777665554433
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.3e-14 Score=129.55 Aligned_cols=211 Identities=18% Similarity=0.199 Sum_probs=135.3
Q ss_pred cCCHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcC----CHHHH
Q 040440 128 DVSYEEKEKEIEQHLAANPND-IEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAG----ESEAA 202 (355)
Q Consensus 128 ~~~~~~A~~~~~~~l~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g----~~~~A 202 (355)
.++|++|..+|.++++.++++ .-.++.+|++|+..|+++.|+.+|+++++..|++.+....+|.+|...+ ..+.|
T Consensus 320 ~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a 399 (1018)
T KOG2002|consen 320 QGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKA 399 (1018)
T ss_pred hccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHH
Confidence 347788888888887777776 6667777788888888888888888887777777777777777777665 55677
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccC----------------------------
Q 040440 203 IKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKK---------------------------- 254 (355)
Q Consensus 203 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~---------------------------- 254 (355)
..+..++++..|.+.++|..++.++....- +.. +..|..|+.++......
T Consensus 400 ~~~l~K~~~~~~~d~~a~l~laql~e~~d~-~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~ 477 (1018)
T KOG2002|consen 400 SNVLGKVLEQTPVDSEAWLELAQLLEQTDP-WAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKS 477 (1018)
T ss_pred HHHHHHHHhcccccHHHHHHHHHHHHhcCh-HHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHH
Confidence 777777777777777777777777665533 221 33333333333331111
Q ss_pred ---------------CchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 040440 255 ---------------SDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFR 319 (355)
Q Consensus 255 ---------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 319 (355)
.......+++|.++...++++.|.+.|..+++.+|...+++..+|......++..+|...++.++
T Consensus 478 A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l 557 (1018)
T KOG2002|consen 478 ALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDAL 557 (1018)
T ss_pred HhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHH
Confidence 11122355666666666666666666666666666666666666655556666666666666666
Q ss_pred HhCCCChhHHHHHHHHHHHHH
Q 040440 320 RLVPRNHPYREYFVDNMVATK 340 (355)
Q Consensus 320 ~~~p~~~~~~~~~~~~~~~~~ 340 (355)
..+..++..+.++....+...
T Consensus 558 ~~d~~np~arsl~G~~~l~k~ 578 (1018)
T KOG2002|consen 558 NIDSSNPNARSLLGNLHLKKS 578 (1018)
T ss_pred hcccCCcHHHHHHHHHHHhhh
Confidence 666666666555554444443
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.5e-14 Score=124.74 Aligned_cols=209 Identities=15% Similarity=0.164 Sum_probs=174.6
Q ss_pred hhhhhccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchH-------HHHHHHHHHH
Q 040440 122 TTSAREDVSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFE-------WQLLKAQVQS 194 (355)
Q Consensus 122 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~-------~~~~la~~~~ 194 (355)
.+.+|...+++.|++.|..+++.+ .+...+.+.+.+|+..|.+.+.+...+++++....... ....+|..|.
T Consensus 231 gnaaykkk~f~~a~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~ 309 (539)
T KOG0548|consen 231 GNAAYKKKDFETAIQHYAKALELA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYT 309 (539)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhh
Confidence 345677779999999999999999 89999999999999999999999999998877554333 2334566788
Q ss_pred HcCCHHHHHHHHHHHHhhCCC--------------------------CHHHHHHHHHHHhccCchHHHHHHHHHHHHHHH
Q 040440 195 YAGESEAAIKGFEEILRKDPL--------------------------RVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERC 248 (355)
Q Consensus 195 ~~g~~~~A~~~~~~~~~~~p~--------------------------~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~ 248 (355)
..++++.|+.+|++++..... -..--..-|..++..|+ |.+|+..+
T Consensus 310 k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gd--------y~~Av~~Y 381 (539)
T KOG0548|consen 310 KREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGD--------YPEAVKHY 381 (539)
T ss_pred hHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccC--------HHHHHHHH
Confidence 889999999999998875422 11112344666666666 67777777
Q ss_pred Hh-hccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChh
Q 040440 249 KK-EKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHP 327 (355)
Q Consensus 249 ~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 327 (355)
.+ +..+|++..++.+.|.+|.++|++..|+...+.+++++|+....|...|.++..+.+|++|.+.|+++++.+|++..
T Consensus 382 teAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e 461 (539)
T KOG0548|consen 382 TEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAE 461 (539)
T ss_pred HHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHH
Confidence 66 56689999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred HHHHHHHHHHHH
Q 040440 328 YREYFVDNMVAT 339 (355)
Q Consensus 328 ~~~~~~~~~~~~ 339 (355)
+...+...+.+.
T Consensus 462 ~~~~~~rc~~a~ 473 (539)
T KOG0548|consen 462 AIDGYRRCVEAQ 473 (539)
T ss_pred HHHHHHHHHHHh
Confidence 777777766654
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.66 E-value=9.3e-14 Score=109.93 Aligned_cols=183 Identities=15% Similarity=0.106 Sum_probs=165.7
Q ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHH
Q 040440 129 VSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEE 208 (355)
Q Consensus 129 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 208 (355)
.+...+...+-+....+|++..+ ..++..+...|+-+.+..+..++...+|.+......+|......|+|.+|+..+++
T Consensus 47 ~q~~~a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rk 125 (257)
T COG5010 47 RQTQGAAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRK 125 (257)
T ss_pred HhhhHHHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 35556777777888899999999 99999999999999999999999988999988888899999999999999999999
Q ss_pred HHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q 040440 209 ILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEE 288 (355)
Q Consensus 209 ~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 288 (355)
+....|++.++|..+|.+|.+.|+ .+.|...|.+|+++ .+..+.+..++|..|...|+++.|..++..+....
T Consensus 126 A~~l~p~d~~~~~~lgaaldq~Gr-~~~Ar~ay~qAl~L------~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~ 198 (257)
T COG5010 126 AARLAPTDWEAWNLLGAALDQLGR-FDEARRAYRQALEL------APNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP 198 (257)
T ss_pred HhccCCCChhhhhHHHHHHHHccC-hhHHHHHHHHHHHh------ccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence 999999999999999999999999 66666666666666 67888999999999999999999999999999998
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 040440 289 PRDFRPYLCQGIIYTLLRKKDEAEKQFEKFR 319 (355)
Q Consensus 289 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 319 (355)
+.+..+..+++.+....|++++|...-.+-+
T Consensus 199 ~ad~~v~~NLAl~~~~~g~~~~A~~i~~~e~ 229 (257)
T COG5010 199 AADSRVRQNLALVVGLQGDFREAEDIAVQEL 229 (257)
T ss_pred CCchHHHHHHHHHHhhcCChHHHHhhccccc
Confidence 8899999999999999999999998765443
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.66 E-value=7.7e-14 Score=120.41 Aligned_cols=104 Identities=19% Similarity=0.167 Sum_probs=98.7
Q ss_pred hhhccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHH
Q 040440 124 SAREDVSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAI 203 (355)
Q Consensus 124 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 203 (355)
.+++.+||+.|+.+|.+++.++|.+...+.+...+|...|+|++|++--.+.+++.|.=+..|..+|..+.-+|+|++|+
T Consensus 11 aa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~ 90 (539)
T KOG0548|consen 11 AAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEAI 90 (539)
T ss_pred hhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHHH
Confidence 45677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHH
Q 040440 204 KGFEEILRKDPLRVEAYHGLVMAY 227 (355)
Q Consensus 204 ~~~~~~~~~~p~~~~~~~~l~~~~ 227 (355)
..|.+.++.+|++...+.+++.++
T Consensus 91 ~ay~~GL~~d~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 91 LAYSEGLEKDPSNKQLKTGLAQAY 114 (539)
T ss_pred HHHHHHhhcCCchHHHHHhHHHhh
Confidence 999999999999998888888776
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.65 E-value=8.5e-15 Score=123.81 Aligned_cols=191 Identities=13% Similarity=0.101 Sum_probs=174.0
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 040440 130 SYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEI 209 (355)
Q Consensus 130 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 209 (355)
++.+|..+.+.++..+.-++.++.+.|.+-+..|++++|.+.|++++..+....++++++|..+..+|+.++|+++|-++
T Consensus 471 ~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~kl 550 (840)
T KOG2003|consen 471 DFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKL 550 (840)
T ss_pred chhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHH
Confidence 88888888888888888888888899999999999999999999999988888899999999999999999999999998
Q ss_pred HhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q 040440 210 LRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEE 288 (355)
Q Consensus 210 ~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 288 (355)
-.+--++.++++.++.+|..+.+ ..+|++++-+ ....|.++.++..+|.+|-+.|+-.+|.+++-......
T Consensus 551 h~il~nn~evl~qianiye~led--------~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryf 622 (840)
T KOG2003|consen 551 HAILLNNAEVLVQIANIYELLED--------PAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYF 622 (840)
T ss_pred HHHHHhhHHHHHHHHHHHHHhhC--------HHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhccccc
Confidence 88888899999999999998888 8888888877 56678999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhH
Q 040440 289 PRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHPY 328 (355)
Q Consensus 289 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 328 (355)
|.+.+..-++|..|....-+++|+.+|+++--+.|+...+
T Consensus 623 p~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kw 662 (840)
T KOG2003|consen 623 PCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKW 662 (840)
T ss_pred CcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHH
Confidence 9999999999999999999999999999999999976443
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.5e-14 Score=123.95 Aligned_cols=204 Identities=15% Similarity=0.104 Sum_probs=132.5
Q ss_pred hhhccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHH
Q 040440 124 SAREDVSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAI 203 (355)
Q Consensus 124 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 203 (355)
..|..++|.+..++.+..++.+|-+..++-....++...|+..+-..+-.++++..|+.+..|+..|..|...|++.+|+
T Consensus 253 ~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~seAR 332 (611)
T KOG1173|consen 253 RLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGKYSEAR 332 (611)
T ss_pred HHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCcHHHH
Confidence 34666688888888888887766655544433335555555555444445555555555555555555555555555555
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHH---------------------------HHHHHHHHHHHh-hccCC
Q 040440 204 KGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVE---------------------------KRIEKAMERCKK-EKKKS 255 (355)
Q Consensus 204 ~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~---------------------------~~~~~Al~~~~~-~~~~~ 255 (355)
.+|.++..++|....+|..+|..+...++ .+.+. ..++-|-+++.. ....|
T Consensus 333 ry~SKat~lD~~fgpaWl~fghsfa~e~E-hdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P 411 (611)
T KOG1173|consen 333 RYFSKATTLDPTFGPAWLAFGHSFAGEGE-HDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAP 411 (611)
T ss_pred HHHHHHhhcCccccHHHHHHhHHhhhcch-HHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCC
Confidence 55555555555555555555555544444 22221 114444444444 45578
Q ss_pred chHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC----C---ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhH
Q 040440 256 DLRDFKLLIAQIKVMESKHSEALRVYEELVKEEP----R---DFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHPY 328 (355)
Q Consensus 256 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~----~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 328 (355)
.++.++..+|.+.+..+.|.+|..+|+.++..-+ . -...+.++|.++.+.+.+++|+.++++++.+.|++...
T Consensus 412 ~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~ 491 (611)
T KOG1173|consen 412 SDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDAST 491 (611)
T ss_pred CcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhH
Confidence 8888999999999999999999999999884322 1 22358899999999999999999999999999998554
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.65 E-value=7.8e-14 Score=124.54 Aligned_cols=184 Identities=16% Similarity=0.115 Sum_probs=121.0
Q ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHc------------------------------
Q 040440 129 VSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIEL------------------------------ 178 (355)
Q Consensus 129 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~------------------------------ 178 (355)
+++++|...++++++..|+++.++..++.++...|++++|++.+++..+.
T Consensus 167 ~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~ 246 (409)
T TIGR00540 167 NELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGID 246 (409)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence 36666666666666666666666666666666666666655555544422
Q ss_pred --------CC----CchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH--HHHHHHHhccCchHHHHHHHHHHH
Q 040440 179 --------EP----NEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAY--HGLVMAYDGSDKKLNEVEKRIEKA 244 (355)
Q Consensus 179 --------~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~--~~l~~~~~~~~~~~~~a~~~~~~A 244 (355)
.| +++..+..++..+...|++++|++.++++++..|++.... ..........++ .+++
T Consensus 247 ~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~--------~~~~ 318 (409)
T TIGR00540 247 GLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPED--------NEKL 318 (409)
T ss_pred HHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCC--------hHHH
Confidence 11 1223344445555556666666666666666665554321 111111122233 3445
Q ss_pred HHHHHh-hccCCchH--HHHHHHHHHHHHccCHHHHHHHHH--HHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 040440 245 MERCKK-EKKKSDLR--DFKLLIAQIKVMESKHSEALRVYE--ELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFR 319 (355)
Q Consensus 245 l~~~~~-~~~~~~~~--~~~~~la~~~~~~g~~~~A~~~~~--~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 319 (355)
++.+++ ....|+++ .+...+|+++++.|++++|.++|+ .+++..|++.. +..+|.++.+.|+.++|.+++++++
T Consensus 319 ~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 319 EKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 555555 55678888 888999999999999999999999 57778885544 6699999999999999999999987
Q ss_pred Hh
Q 040440 320 RL 321 (355)
Q Consensus 320 ~~ 321 (355)
..
T Consensus 398 ~~ 399 (409)
T TIGR00540 398 GL 399 (409)
T ss_pred HH
Confidence 64
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.64 E-value=6.8e-14 Score=124.32 Aligned_cols=178 Identities=19% Similarity=0.207 Sum_probs=152.0
Q ss_pred cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHc--------CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--
Q 040440 144 ANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIEL--------EPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKD-- 213 (355)
Q Consensus 144 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-- 213 (355)
.+|.-..+...++..|...|+|++|+..++.+++. .+........+|.+|..++++++|+.+|++++.+.
T Consensus 194 ~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~ 273 (508)
T KOG1840|consen 194 EDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREE 273 (508)
T ss_pred CCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 45666777888999999999999999999999987 44444455569999999999999999999999872
Q ss_pred ---CCC---HHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh--hccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 040440 214 ---PLR---VEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK--EKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELV 285 (355)
Q Consensus 214 ---p~~---~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~--~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 285 (355)
+++ ..++.+|+.+|...|+ +.+|..++++|++++++ ....+.....+..++.++..++++++|..++++++
T Consensus 274 ~~G~~h~~va~~l~nLa~ly~~~GK-f~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al 352 (508)
T KOG1840|consen 274 VFGEDHPAVAATLNNLAVLYYKQGK-FAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKAL 352 (508)
T ss_pred hcCCCCHHHHHHHHHHHHHHhccCC-hHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 334 4568899999999999 99999999999999998 34556666778899999999999999999999998
Q ss_pred HhCC-----C---ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 040440 286 KEEP-----R---DFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLV 322 (355)
Q Consensus 286 ~~~~-----~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 322 (355)
++.. + -...+.+||.+|..+|++++|.+++++++.+.
T Consensus 353 ~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~ 397 (508)
T KOG1840|consen 353 KIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQIL 397 (508)
T ss_pred HHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 7532 2 25678999999999999999999999999875
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.2e-14 Score=118.04 Aligned_cols=188 Identities=14% Similarity=0.172 Sum_probs=171.0
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 040440 130 SYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEI 209 (355)
Q Consensus 130 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 209 (355)
-+.+|.+.++..++..| .++.+..++.+|.+..+...|+..+.+.++..|.+...+..++.++..++++++|.++|+.+
T Consensus 238 m~r~AekqlqssL~q~~-~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~v 316 (478)
T KOG1129|consen 238 MPRRAEKQLQSSLTQFP-HPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLV 316 (478)
T ss_pred ChhhhHHHHHHHhhcCC-chhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHH
Confidence 78899999999998765 57889999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q 040440 210 LRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEE 288 (355)
Q Consensus 210 ~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 288 (355)
++.+|.+.++.-.++.-|+-.++ .+-|+.++++ +.....+++++.++|.|....+++|-++..|++++...
T Consensus 317 lk~~~~nvEaiAcia~~yfY~~~--------PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlsta 388 (478)
T KOG1129|consen 317 LKLHPINVEAIACIAVGYFYDNN--------PEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTA 388 (478)
T ss_pred HhcCCccceeeeeeeeccccCCC--------hHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhc
Confidence 99999999998888888888888 7888888888 56677889999999999999999999999999999754
Q ss_pred C---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q 040440 289 P---RDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNH 326 (355)
Q Consensus 289 ~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~ 326 (355)
. .-.++|+++|.+....|++.-|..+|+-++.-++++.
T Consensus 389 t~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ 429 (478)
T KOG1129|consen 389 TQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHG 429 (478)
T ss_pred cCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchH
Confidence 3 3468999999999999999999999999999998873
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.64 E-value=6.7e-13 Score=104.25 Aligned_cols=192 Identities=18% Similarity=0.125 Sum_probs=162.6
Q ss_pred hccCCHHHHHHHHHHHHHcC------CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCH
Q 040440 126 REDVSYEEKEKEIEQHLAAN------PNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGES 199 (355)
Q Consensus 126 ~~~~~~~~A~~~~~~~l~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 199 (355)
+...+.++-+++..+.+... ++.-..+.....+....|+.+.|..++++.....|+........|..+...|++
T Consensus 23 ~~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 23 ETVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred ccccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhch
Confidence 33347777788777776532 333445566677777899999999999999888899999999999999999999
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHHHccCHHHHH
Q 040440 200 EAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQIKVMESKHSEAL 278 (355)
Q Consensus 200 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~ 278 (355)
++|+++|+..++-+|.+...+.....+...+|+ --+||+.+.+ ....+.+.++|..++.+|+..|+|++|.
T Consensus 103 ~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK--------~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~ 174 (289)
T KOG3060|consen 103 KEAIEYYESLLEDDPTDTVIRKRKLAILKAQGK--------NLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAA 174 (289)
T ss_pred hhHHHHHHHHhccCcchhHHHHHHHHHHHHcCC--------cHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHH
Confidence 999999999999999999888888778888887 4566666666 6668889999999999999999999999
Q ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCC
Q 040440 279 RVYEELVKEEPRDFRPYLCQGIIYTLLR---KKDEAEKQFEKFRRLVPRN 325 (355)
Q Consensus 279 ~~~~~~l~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~l~~~p~~ 325 (355)
-++++++-..|.++..+..+|.+++-+| +++-|.++|.++++++|.+
T Consensus 175 fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~ 224 (289)
T KOG3060|consen 175 FCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKN 224 (289)
T ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHh
Confidence 9999999999999999999999988877 5678999999999999965
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=9.5e-14 Score=131.61 Aligned_cols=185 Identities=12% Similarity=0.112 Sum_probs=157.6
Q ss_pred hhccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHH
Q 040440 125 AREDVSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIK 204 (355)
Q Consensus 125 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 204 (355)
.+..++++.|+..|+++++.+|++......++.++...|+.++|+.++++++...+........+|.++...|++++|++
T Consensus 44 ~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aie 123 (822)
T PRK14574 44 RARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALA 123 (822)
T ss_pred HHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 36677999999999999999999965555888899999999999999999993334444445555889999999999999
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHHHccCHHHHHHHHHH
Q 040440 205 GFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQIKVMESKHSEALRVYEE 283 (355)
Q Consensus 205 ~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 283 (355)
.|+++++.+|+++.++..++.++...++ .++|++.+++ ....+.... +..++.++...++..+|++.+++
T Consensus 124 ly~kaL~~dP~n~~~l~gLa~~y~~~~q--------~~eAl~~l~~l~~~dp~~~~-~l~layL~~~~~~~~~AL~~~ek 194 (822)
T PRK14574 124 LWQSSLKKDPTNPDLISGMIMTQADAGR--------GGVVLKQATELAERDPTVQN-YMTLSYLNRATDRNYDALQASSE 194 (822)
T ss_pred HHHHHHhhCCCCHHHHHHHHHHHhhcCC--------HHHHHHHHHHhcccCcchHH-HHHHHHHHHhcchHHHHHHHHHH
Confidence 9999999999999999999999999999 8999999988 445555444 36667777677888789999999
Q ss_pred HHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 040440 284 LVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKF 318 (355)
Q Consensus 284 ~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 318 (355)
+++.+|++..++..+..++...|-...|.+..++.
T Consensus 195 ll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~ 229 (822)
T PRK14574 195 AVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKEN 229 (822)
T ss_pred HHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhC
Confidence 99999999999999999999999999998776653
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.8e-14 Score=107.04 Aligned_cols=120 Identities=12% Similarity=0.080 Sum_probs=108.1
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHHHccCHHHHHHHH
Q 040440 203 IKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQIKVMESKHSEALRVY 281 (355)
Q Consensus 203 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 281 (355)
...|+++++.+|++ ++.+|.++...|+ +++|+..++. ....|.+..++..+|.++...|++++|+..|
T Consensus 13 ~~~~~~al~~~p~~---~~~~g~~~~~~g~--------~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y 81 (144)
T PRK15359 13 EDILKQLLSVDPET---VYASGYASWQEGD--------YSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFY 81 (144)
T ss_pred HHHHHHHHHcCHHH---HHHHHHHHHHcCC--------HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 46789999988875 5678999999999 8888888877 6778999999999999999999999999999
Q ss_pred HHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHH
Q 040440 282 EELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHPYREYFV 333 (355)
Q Consensus 282 ~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~ 333 (355)
++++..+|+++.+++++|.++..+|++++|+..|++++++.|+++.+.....
T Consensus 82 ~~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~ 133 (144)
T PRK15359 82 GHALMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQ 133 (144)
T ss_pred HHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 9999999999999999999999999999999999999999999876654433
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.60 E-value=5.3e-13 Score=117.71 Aligned_cols=188 Identities=19% Similarity=0.185 Sum_probs=154.4
Q ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHH
Q 040440 129 VSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEE 208 (355)
Q Consensus 129 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 208 (355)
+|...|..++.++++.+|++.+.|.....+.....+++.|..+|.++....| ...+|+.-+.....+++.++|+.++++
T Consensus 598 gdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sg-TeRv~mKs~~~er~ld~~eeA~rllEe 676 (913)
T KOG0495|consen 598 GDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISG-TERVWMKSANLERYLDNVEEALRLLEE 676 (913)
T ss_pred CCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCC-cchhhHHHhHHHHHhhhHHHHHHHHHH
Confidence 4666666677777777777667776666666667777777777776665544 334566667777788899999999999
Q ss_pred HHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 040440 209 ILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKE 287 (355)
Q Consensus 209 ~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 287 (355)
+++.+|+....|..+|+++.++++ .+.|.+.|.. .+..|....+|..++.+-.+.|+.-+|..+++++.-.
T Consensus 677 ~lk~fp~f~Kl~lmlGQi~e~~~~--------ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlk 748 (913)
T KOG0495|consen 677 ALKSFPDFHKLWLMLGQIEEQMEN--------IEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLK 748 (913)
T ss_pred HHHhCCchHHHHHHHhHHHHHHHH--------HHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhc
Confidence 999999999999999999999888 7777777776 6778889999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 040440 288 EPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRN 325 (355)
Q Consensus 288 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~ 325 (355)
+|++...|.....+..+.|+.+.|...+.++++-.|++
T Consensus 749 NPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~s 786 (913)
T KOG0495|consen 749 NPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSS 786 (913)
T ss_pred CCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcc
Confidence 99999999999999999999999999999999988876
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=4.8e-13 Score=124.61 Aligned_cols=144 Identities=13% Similarity=-0.013 Sum_probs=77.0
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 040440 138 IEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRV 217 (355)
Q Consensus 138 ~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~ 217 (355)
+.......|.+++++..+|.+....|.+++|..+++.+++..|++..++..++.++.+.+++++|+..+++++..+|++.
T Consensus 75 ~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~ 154 (694)
T PRK15179 75 LLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSA 154 (694)
T ss_pred HHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCH
Confidence 33333444445555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHH
Q 040440 218 EAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLC 297 (355)
Q Consensus 218 ~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~ 297 (355)
..++ .+|.++.+.|++++|+..|++++..+|++..++..
T Consensus 155 ~~~~-----------------------------------------~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~ 193 (694)
T PRK15179 155 REIL-----------------------------------------LEAKSWDEIGQSEQADACFERLSRQHPEFENGYVG 193 (694)
T ss_pred HHHH-----------------------------------------HHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHH
Confidence 5544 44555555555555555555555555555555555
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC
Q 040440 298 QGIIYTLLRKKDEAEKQFEKFRRLV 322 (355)
Q Consensus 298 l~~~~~~~g~~~~A~~~~~~~l~~~ 322 (355)
+|.++...|+.++|...|+++++..
T Consensus 194 ~a~~l~~~G~~~~A~~~~~~a~~~~ 218 (694)
T PRK15179 194 WAQSLTRRGALWRARDVLQAGLDAI 218 (694)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 5555555555555555555555554
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=5.2e-13 Score=126.67 Aligned_cols=178 Identities=13% Similarity=0.138 Sum_probs=152.2
Q ss_pred cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 040440 144 ANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGL 223 (355)
Q Consensus 144 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 223 (355)
..|+.+...+..+.+..+.|+++.|+..|+++++.+|++......++.++...|+.++|+.++++++.-.+........+
T Consensus 29 ~~p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llal 108 (822)
T PRK14574 29 VNPAMADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASA 108 (822)
T ss_pred cCccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHH
Confidence 56778888999999999999999999999999999999864444888888999999999999999994444455555556
Q ss_pred HHHHhccCchHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 040440 224 VMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIY 302 (355)
Q Consensus 224 ~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~ 302 (355)
+.++...|+ +++|++++++ ....|++..++..++.+|...++.++|++.+++++..+|.+... ..++.++
T Consensus 109 A~ly~~~gd--------yd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~ 179 (822)
T PRK14574 109 ARAYRNEKR--------WDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLN 179 (822)
T ss_pred HHHHHHcCC--------HHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHH
Confidence 889999999 8888888888 67789999999999999999999999999999999999975544 6666677
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCChhHHH
Q 040440 303 TLLRKKDEAEKQFEKFRRLVPRNHPYRE 330 (355)
Q Consensus 303 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~ 330 (355)
...++..+|++.++++++.+|++..+..
T Consensus 180 ~~~~~~~~AL~~~ekll~~~P~n~e~~~ 207 (822)
T PRK14574 180 RATDRNYDALQASSEAVRLAPTSEEVLK 207 (822)
T ss_pred HhcchHHHHHHHHHHHHHhCCCCHHHHH
Confidence 6678887899999999999999866543
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.58 E-value=5.8e-13 Score=119.50 Aligned_cols=86 Identities=16% Similarity=0.103 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHc-CCCchHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 040440 131 YEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIEL-EPNEFEWQLLKAQVQSYAGESEAAIKGFEEI 209 (355)
Q Consensus 131 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 209 (355)
-.++++.++++++.+|+|+.+.+.++.-|...++.+.|.++.+++++. ..++...|..++.++...+++.+|+.+.+.+
T Consensus 460 h~kslqale~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~a 539 (799)
T KOG4162|consen 460 HKKSLQALEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAA 539 (799)
T ss_pred HHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 467899999999999999999999999999999999999999999999 5567789999999999999999999999999
Q ss_pred HhhCCCC
Q 040440 210 LRKDPLR 216 (355)
Q Consensus 210 ~~~~p~~ 216 (355)
++-.++|
T Consensus 540 l~E~~~N 546 (799)
T KOG4162|consen 540 LEEFGDN 546 (799)
T ss_pred HHHhhhh
Confidence 8877764
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.7e-13 Score=109.02 Aligned_cols=114 Identities=19% Similarity=0.139 Sum_probs=105.7
Q ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHH-HHcCC--HHHHHHH
Q 040440 129 VSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQ-SYAGE--SEAAIKG 205 (355)
Q Consensus 129 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~-~~~g~--~~~A~~~ 205 (355)
.+.++++..++++++.+|++.+.|..+|.+|...|++++|+..|+++++++|++...+..+|.++ ...|+ +++|++.
T Consensus 53 ~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~ 132 (198)
T PRK10370 53 QTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREM 132 (198)
T ss_pred hhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHH
Confidence 37789999999999999999999999999999999999999999999999999999999999974 67787 5999999
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh
Q 040440 206 FEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK 250 (355)
Q Consensus 206 ~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~ 250 (355)
++++++.+|++..++..+|..+...|+ +++|+..+++
T Consensus 133 l~~al~~dP~~~~al~~LA~~~~~~g~--------~~~Ai~~~~~ 169 (198)
T PRK10370 133 IDKALALDANEVTALMLLASDAFMQAD--------YAQAIELWQK 169 (198)
T ss_pred HHHHHHhCCCChhHHHHHHHHHHHcCC--------HHHHHHHHHH
Confidence 999999999999999999999999999 6666666665
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.2e-14 Score=136.97 Aligned_cols=267 Identities=12% Similarity=0.072 Sum_probs=194.7
Q ss_pred CCCCCCCCCcccccccCCCCCCCCCCCCcccccCCCCCCc-cchHHHHHHHHHHHHhcccc--ccccCcccccccccccc
Q 040440 35 RTPPSSSPFKFSCIRASSSPASQQNPKPSLLRTLTPLSSP-LIKITSVTVAAAALLFMRLP--FHSIKPAIAAPVAAAAT 111 (355)
Q Consensus 35 ~~~~~~~~~~~~~~~~~s~~~s~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~~~~a~~~~~~~~~~ 111 (355)
..+.++...++++|.++....-...+...|..+...+..| .++...++.+++.. +... .+.+......+...+..
T Consensus 284 ~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~--g~~~~a~~i~~~m~~~g~~~d~~ 361 (697)
T PLN03081 284 GMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRL--ALLEHAKQAHAGLIRTGFPLDIV 361 (697)
T ss_pred hCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc--cchHHHHHHHHHHHHhCCCCCee
Confidence 3344455677888877766643333444555555444444 44555554443321 1110 00111222223333333
Q ss_pred cccchhhhhhhhhhhccC-CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCC-CchHHHHHH
Q 040440 112 VESTNESTKDTTSAREDV-SYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEP-NEFEWQLLK 189 (355)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l 189 (355)
.-+++. ..|.+. ++++|.++|+++.+ .+...|..++..|.+.|+.++|+++|+++.+..- .+...+..+
T Consensus 362 ~~~~Li------~~y~k~G~~~~A~~vf~~m~~---~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~l 432 (697)
T PLN03081 362 ANTALV------DLYSKWGRMEDARNVFDRMPR---KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAV 432 (697)
T ss_pred ehHHHH------HHHHHCCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 334444 235556 99999999998864 3678899999999999999999999999987532 245567788
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHH
Q 040440 190 AQVQSYAGESEAAIKGFEEILRKDP--LRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQI 267 (355)
Q Consensus 190 a~~~~~~g~~~~A~~~~~~~~~~~p--~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~ 267 (355)
...+...|+.++|.++|+.+.+..+ .+...|..+...+.+.|+ +++|.+++++....| +..+|..+...
T Consensus 433 l~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~--------~~eA~~~~~~~~~~p-~~~~~~~Ll~a 503 (697)
T PLN03081 433 LSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGL--------LDEAYAMIRRAPFKP-TVNMWAALLTA 503 (697)
T ss_pred HHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCC--------HHHHHHHHHHCCCCC-CHHHHHHHHHH
Confidence 8889999999999999999987533 345678889999999999 999999988755444 45678889999
Q ss_pred HHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 040440 268 KVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRL 321 (355)
Q Consensus 268 ~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 321 (355)
+...|+++.|...++++++..|++...|..++.+|.+.|++++|.+.+++..+.
T Consensus 504 ~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~ 557 (697)
T PLN03081 504 CRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK 557 (697)
T ss_pred HHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 999999999999999999999999999999999999999999999999988764
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.58 E-value=9.9e-13 Score=103.31 Aligned_cols=171 Identities=19% Similarity=0.134 Sum_probs=155.1
Q ss_pred hccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHH
Q 040440 126 REDVSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKG 205 (355)
Q Consensus 126 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 205 (355)
...++.+.|..++++.....|++..+....|..+-..|++++|+++|+..++.+|.+..++.....+...+|+.-+|++.
T Consensus 63 ld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ 142 (289)
T KOG3060|consen 63 LDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKE 142 (289)
T ss_pred HHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHH
Confidence 33457888999999999989999999999999999999999999999999999999999888888888899999999999
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHHHcc---CHHHHHHHH
Q 040440 206 FEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQIKVMES---KHSEALRVY 281 (355)
Q Consensus 206 ~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~ 281 (355)
+.+.++..+.+.++|..++.+|...|+ |++|.-++++ +-..|.++.+...+|.+++-+| +++-|.++|
T Consensus 143 ln~YL~~F~~D~EAW~eLaeiY~~~~~--------f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy 214 (289)
T KOG3060|consen 143 LNEYLDKFMNDQEAWHELAEIYLSEGD--------FEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYY 214 (289)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHhHhH--------HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 999999999999999999999999999 9999999999 6778999999999999988766 577899999
Q ss_pred HHHHHhCCCChHHHHHHHHHHHH
Q 040440 282 EELVKEEPRDFRPYLCQGIIYTL 304 (355)
Q Consensus 282 ~~~l~~~~~~~~~~~~l~~~~~~ 304 (355)
.++++++|.+...++.+..+...
T Consensus 215 ~~alkl~~~~~ral~GI~lc~~~ 237 (289)
T KOG3060|consen 215 ERALKLNPKNLRALFGIYLCGSA 237 (289)
T ss_pred HHHHHhChHhHHHHHHHHHHHHH
Confidence 99999999888888877665543
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.57 E-value=8.9e-13 Score=116.19 Aligned_cols=203 Identities=10% Similarity=0.018 Sum_probs=148.4
Q ss_pred cccccchhhhhhhhhhhccC-CHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHH
Q 040440 110 ATVESTNESTKDTTSAREDV-SYEEKEKEIEQHLAANPND---IEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEW 185 (355)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 185 (355)
|++..+...++.. +... +.+++.+.+.+..+..+.+ .+.....+..+...|++++|+..++++++.+|++..+
T Consensus 3 p~~~~a~~~~a~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a 79 (355)
T cd05804 3 PDFALGHAAAALL---LLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLA 79 (355)
T ss_pred CccHHHHHHHHHH---HHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHH
Confidence 3444444444433 3323 6777788888877766643 5567778888899999999999999999999988876
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH----hhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hccCCchHHH
Q 040440 186 QLLKAQVQSYAGESEAAIKGFEEIL----RKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDF 260 (355)
Q Consensus 186 ~~~la~~~~~~g~~~~A~~~~~~~~----~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~ 260 (355)
+.. +..+...|++.++.....+++ ..+|........++.++...|+ +++|+..+++ ....|.+...
T Consensus 80 ~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~--------~~~A~~~~~~al~~~p~~~~~ 150 (355)
T cd05804 80 LKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQ--------YDRAEEAARRALELNPDDAWA 150 (355)
T ss_pred HHH-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHhhCCCCcHH
Confidence 664 555555554444444444443 4456666777788889999998 7777777766 4557777888
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCh----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 040440 261 KLLIAQIKVMESKHSEALRVYEELVKEEPRDF----RPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPR 324 (355)
Q Consensus 261 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~ 324 (355)
+..+|.++...|++++|+.++++++...|.+. ..|..++.++...|++++|+..|++++...|.
T Consensus 151 ~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~ 218 (355)
T cd05804 151 VHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAE 218 (355)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccC
Confidence 88899999999999999999999998876432 34667899999999999999999998776664
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=99.57 E-value=3.9e-13 Score=111.22 Aligned_cols=165 Identities=15% Similarity=0.079 Sum_probs=117.0
Q ss_pred CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCch---HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH---
Q 040440 145 NPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEF---EWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVE--- 218 (355)
Q Consensus 145 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~--- 218 (355)
++..+..++.+|..+...|++++|+..|++++..+|+++ .+++.+|.++...|++++|+..|+++++.+|+++.
T Consensus 29 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 108 (235)
T TIGR03302 29 EEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADY 108 (235)
T ss_pred ccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHH
Confidence 445678899999999999999999999999999999875 57899999999999999999999999999998776
Q ss_pred HHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHH
Q 040440 219 AYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLC 297 (355)
Q Consensus 219 ~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~ 297 (355)
+++.+|.++...........+.+++|++.+++ ....|.....+..+..+.... .. .......
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~----~~-------------~~~~~~~ 171 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLR----NR-------------LAGKELY 171 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHH----HH-------------HHHHHHH
Confidence 57788888765411000011124455555544 233343333221111111000 00 0112357
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q 040440 298 QGIIYTLLRKKDEAEKQFEKFRRLVPRNH 326 (355)
Q Consensus 298 l~~~~~~~g~~~~A~~~~~~~l~~~p~~~ 326 (355)
+|.++...|++++|+..++++++..|+.+
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~ 200 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTP 200 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCc
Confidence 88999999999999999999999998764
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=4.6e-13 Score=124.76 Aligned_cols=134 Identities=16% Similarity=0.110 Sum_probs=116.4
Q ss_pred ccccchhhhhhhhhhhccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHH
Q 040440 111 TVESTNESTKDTTSAREDVSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKA 190 (355)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la 190 (355)
....+...++.. ....+.+++|+..++.+++..|++..++..++.++.+.+++++|+..+++++..+|++...++.+|
T Consensus 84 ~~~~~~~~La~i--~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a 161 (694)
T PRK15179 84 HTELFQVLVARA--LEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEA 161 (694)
T ss_pred ccHHHHHHHHHH--HHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHH
Confidence 344455555555 223349999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHH
Q 040440 191 QVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMER 247 (355)
Q Consensus 191 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~ 247 (355)
.++...|++++|+.+|++++..+|++..++..+|.++...|+ .++|...|++|++.
T Consensus 162 ~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~-~~~A~~~~~~a~~~ 217 (694)
T PRK15179 162 KSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGA-LWRARDVLQAGLDA 217 (694)
T ss_pred HHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999998 55555555555544
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.4e-12 Score=114.95 Aligned_cols=157 Identities=15% Similarity=0.118 Sum_probs=123.2
Q ss_pred hhhccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH----HcCCCchHHHHHHHHHHHHcCCH
Q 040440 124 SAREDVSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLI----ELEPNEFEWQLLKAQVQSYAGES 199 (355)
Q Consensus 124 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~~~~la~~~~~~g~~ 199 (355)
..+..+++++|...++++++.+|++..++.. +..+...|++..+.....+++ ..+|.....+..+|.++...|++
T Consensus 52 ~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~ 130 (355)
T cd05804 52 SAWIAGDLPKALALLEQLLDDYPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQY 130 (355)
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCH
Confidence 3455669999999999999999999988775 556655555444444444443 44666666777889999999999
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hccCC--ch--HHHHHHHHHHHHHccCH
Q 040440 200 EAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKS--DL--RDFKLLIAQIKVMESKH 274 (355)
Q Consensus 200 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~--~~--~~~~~~la~~~~~~g~~ 274 (355)
++|+..++++++..|++...+..++.++...|+ +++|+..+++ ....+ .. ...+..++.++...|++
T Consensus 131 ~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~--------~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~ 202 (355)
T cd05804 131 DRAEEAARRALELNPDDAWAVHAVAHVLEMQGR--------FKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDY 202 (355)
T ss_pred HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCC--------HHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCH
Confidence 999999999999999999999999999999999 7777777776 22222 11 23466899999999999
Q ss_pred HHHHHHHHHHHHhCC
Q 040440 275 SEALRVYEELVKEEP 289 (355)
Q Consensus 275 ~~A~~~~~~~l~~~~ 289 (355)
++|+..|++++...|
T Consensus 203 ~~A~~~~~~~~~~~~ 217 (355)
T cd05804 203 EAALAIYDTHIAPSA 217 (355)
T ss_pred HHHHHHHHHHhcccc
Confidence 999999999976655
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.56 E-value=2e-12 Score=114.13 Aligned_cols=201 Identities=16% Similarity=0.112 Sum_probs=155.1
Q ss_pred hccC-CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHH
Q 040440 126 REDV-SYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIK 204 (355)
Q Consensus 126 ~~~~-~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 204 (355)
.++. .++-|+.+|..+++.+|..-..|...+..--.-|..++-..++++++...|.....|.+.+..+...|+...|+.
T Consensus 526 ~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~ 605 (913)
T KOG0495|consen 526 CEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARV 605 (913)
T ss_pred HHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHH
Confidence 4444 667777777777888887777777777777777777777777888887777777777777777777788888888
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHhccCchHH--------------------------HHHHHHHHHHHHHHh-hccCCch
Q 040440 205 GFEEILRKDPLRVEAYHGLVMAYDGSDKKLN--------------------------EVEKRIEKAMERCKK-EKKKSDL 257 (355)
Q Consensus 205 ~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~--------------------------~a~~~~~~Al~~~~~-~~~~~~~ 257 (355)
++.++++.+|++.+.|..-..+.....+ ++ ..++..++|++++++ ++..|+.
T Consensus 606 il~~af~~~pnseeiwlaavKle~en~e-~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f 684 (913)
T KOG0495|consen 606 ILDQAFEANPNSEEIWLAAVKLEFENDE-LERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKSFPDF 684 (913)
T ss_pred HHHHHHHhCCCcHHHHHHHHHHhhcccc-HHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCch
Confidence 8888888777777777655555554444 22 224557778888877 6777888
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChh
Q 040440 258 RDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHP 327 (355)
Q Consensus 258 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 327 (355)
..+|..+|+++..+++.+.|.+.|...++..|..+..|..++.+-.+.|+.-.|...++++.-.+|++..
T Consensus 685 ~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~ 754 (913)
T KOG0495|consen 685 HKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNAL 754 (913)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcch
Confidence 8888888888888888888888888888888888888888888888888888888888888888888743
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.6e-13 Score=102.04 Aligned_cols=122 Identities=18% Similarity=0.192 Sum_probs=110.9
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHHHccCHHHHHHHHH
Q 040440 204 KGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQIKVMESKHSEALRVYE 282 (355)
Q Consensus 204 ~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 282 (355)
+.+++++..+|++....+.++.++...|+ +++|++.++. ....+.+..++..+|.++...|++++|+.+++
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~--------~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~ 75 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGR--------YDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYA 75 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHccc--------HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46889999999999999999999999999 8888888877 45578899999999999999999999999999
Q ss_pred HHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHH
Q 040440 283 ELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHPYREYFV 333 (355)
Q Consensus 283 ~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~ 333 (355)
++++.+|++...++.+|.++...|++++|+..|+++++++|++.....+..
T Consensus 76 ~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 126 (135)
T TIGR02552 76 LAAALDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYSELKE 126 (135)
T ss_pred HHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHH
Confidence 999999999999999999999999999999999999999999866544433
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.2e-13 Score=131.93 Aligned_cols=182 Identities=12% Similarity=0.052 Sum_probs=134.2
Q ss_pred hccC-CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCchHHHHHHHHHHHHcCCHHHHH
Q 040440 126 REDV-SYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELE-PNEFEWQLLKAQVQSYAGESEAAI 203 (355)
Q Consensus 126 ~~~~-~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~ 203 (355)
|.+. ++++|.++|+++. +.+...|..+...|.+.|++++|+++|+++.+.. .-+...+..+...+.+.|++++|.
T Consensus 269 y~k~g~~~~A~~vf~~m~---~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~ 345 (697)
T PLN03081 269 YSKCGDIEDARCVFDGMP---EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAK 345 (697)
T ss_pred HHHCCCHHHHHHHHHhCC---CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHH
Confidence 5556 8999999998763 4578889999999999999999999999987653 224557778888888888888888
Q ss_pred HHHHHHHhhC-CCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHccCHHHHHHHHH
Q 040440 204 KGFEEILRKD-PLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYE 282 (355)
Q Consensus 204 ~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 282 (355)
+.++.+++.. +.+..++..+...|.+.|+ +++|.++|++... .+...|..+...|.+.|+.++|++.|+
T Consensus 346 ~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~--------~~~A~~vf~~m~~--~d~~t~n~lI~~y~~~G~~~~A~~lf~ 415 (697)
T PLN03081 346 QAHAGLIRTGFPLDIVANTALVDLYSKWGR--------MEDARNVFDRMPR--KNLISWNALIAGYGNHGRGTKAVEMFE 415 (697)
T ss_pred HHHHHHHHhCCCCCeeehHHHHHHHHHCCC--------HHHHHHHHHhCCC--CCeeeHHHHHHHHHHcCCHHHHHHHHH
Confidence 8888888875 4566777888888888888 7777777766432 244567777777777777777777777
Q ss_pred HHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 040440 283 ELVKEEP-RDFRPYLCQGIIYTLLRKKDEAEKQFEKFRR 320 (355)
Q Consensus 283 ~~l~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 320 (355)
++.+..- -|..++..+...+.+.|+.++|.++|+...+
T Consensus 416 ~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~ 454 (697)
T PLN03081 416 RMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSE 454 (697)
T ss_pred HHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 7765321 1455566666666677777777777766654
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=1e-12 Score=123.50 Aligned_cols=193 Identities=16% Similarity=0.121 Sum_probs=143.3
Q ss_pred ccccccchhhhhhhhhhh-ccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCch----
Q 040440 109 AATVESTNESTKDTTSAR-EDVSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEF---- 183 (355)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~---- 183 (355)
.|....++..+... | ..+++++|++.++..++.+|+....++.+|.++.+.++++++..+ .++...+.+.
T Consensus 27 ~p~n~~a~~~Li~~---~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ 101 (906)
T PRK14720 27 SLSKFKELDDLIDA---YKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAI 101 (906)
T ss_pred CcchHHHHHHHHHH---HHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhH
Confidence 34444555555555 7 445999999999999999999999999999999999988887776 6666555544
Q ss_pred ---------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHH
Q 040440 184 ---------------EWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERC 248 (355)
Q Consensus 184 ---------------~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~ 248 (355)
.+++.+|.||-++|++++|...|+++++.+|+++.+..++|..|... + ++.|..++.+|+..+
T Consensus 102 ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-d-L~KA~~m~~KAV~~~ 179 (906)
T PRK14720 102 VEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-D-KEKAITYLKKAIYRF 179 (906)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-h-HHHHHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999888 5 777776666666553
Q ss_pred HhhccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHH--------------------HHHHHHHHHHcCCH
Q 040440 249 KKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRP--------------------YLCQGIIYTLLRKK 308 (355)
Q Consensus 249 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~--------------------~~~l~~~~~~~g~~ 308 (355)
+..++|.++.+++.+.+..+|++.+. +.-+-..|...++|
T Consensus 180 --------------------i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~ 239 (906)
T PRK14720 180 --------------------IKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDW 239 (906)
T ss_pred --------------------HhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhh
Confidence 44455555555555555555554332 11222455556666
Q ss_pred HHHHHHHHHHHHhCCCChhH
Q 040440 309 DEAEKQFEKFRRLVPRNHPY 328 (355)
Q Consensus 309 ~~A~~~~~~~l~~~p~~~~~ 328 (355)
++++.+++.+++.+|+|...
T Consensus 240 ~~~i~iLK~iL~~~~~n~~a 259 (906)
T PRK14720 240 DEVIYILKKILEHDNKNNKA 259 (906)
T ss_pred hHHHHHHHHHHhcCCcchhh
Confidence 66666666666666665443
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.4e-12 Score=114.95 Aligned_cols=210 Identities=17% Similarity=0.094 Sum_probs=140.8
Q ss_pred hccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHH
Q 040440 126 REDVSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKG 205 (355)
Q Consensus 126 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 205 (355)
|+.++|...++..+.+++..|++++.+...|..+...|+-++|..+...++..++.....|..+|.++....+|++|+++
T Consensus 18 yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKc 97 (700)
T KOG1156|consen 18 YETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKC 97 (700)
T ss_pred HHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHH
Confidence 66667777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHhccCchHHHH---------------------------HHHHHHHHHHHHh---hc-cC
Q 040440 206 FEEILRKDPLRVEAYHGLVMAYDGSDKKLNEV---------------------------EKRIEKAMERCKK---EK-KK 254 (355)
Q Consensus 206 ~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a---------------------------~~~~~~Al~~~~~---~~-~~ 254 (355)
|+.++.+.|+|...+.-++.+..++++. +.. .+.+..|+.+++. .. ..
T Consensus 98 y~nAl~~~~dN~qilrDlslLQ~QmRd~-~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~ 176 (700)
T KOG1156|consen 98 YRNALKIEKDNLQILRDLSLLQIQMRDY-EGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTS 176 (700)
T ss_pred HHHHHhcCCCcHHHHHHHHHHHHHHHhh-hhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 7777777777777777777666666652 111 2335666665555 11 11
Q ss_pred CchHH-----HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHH
Q 040440 255 SDLRD-----FKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHPYR 329 (355)
Q Consensus 255 ~~~~~-----~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~ 329 (355)
+.... .......+..+.|.+++|++.+..--...-+........+.++.++|+.++|...|...+..+|++..|.
T Consensus 177 ~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy 256 (700)
T KOG1156|consen 177 PSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYY 256 (700)
T ss_pred CCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHH
Confidence 22221 2233344555566666666665543332223344556678999999999999999999999999996665
Q ss_pred HHHHHHH
Q 040440 330 EYFVDNM 336 (355)
Q Consensus 330 ~~~~~~~ 336 (355)
..+...+
T Consensus 257 ~~l~~~l 263 (700)
T KOG1156|consen 257 EGLEKAL 263 (700)
T ss_pred HHHHHHH
Confidence 4444333
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=8.3e-12 Score=121.78 Aligned_cols=200 Identities=14% Similarity=0.070 Sum_probs=122.1
Q ss_pred hccC-CHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHc----CCCchHHHHHHHHHHHHcCCH
Q 040440 126 REDV-SYEEKEKEIEQHLAANP-NDIEALQTLMEVRIKSQKLVEAVDVIDRLIEL----EPNEFEWQLLKAQVQSYAGES 199 (355)
Q Consensus 126 ~~~~-~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~la~~~~~~g~~ 199 (355)
|.+. ++++|+++|+++.+..- -+...|..+...|.+.|++++|.++|+++... .| +...|..+...|.+.|++
T Consensus 517 y~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~P-D~vTynaLI~ay~k~G~l 595 (1060)
T PLN03218 517 CARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDP-DHITVGALMKACANAGQV 595 (1060)
T ss_pred HHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCC-cHHHHHHHHHHHHHCCCH
Confidence 4444 78888888887766432 24666777777777777777777777777642 23 334566666667777777
Q ss_pred HHHHHHHHHHHhhC-CCCHHHHHHHHHHHhccCchHHHHH----------------------------HHHHHHHHHHHh
Q 040440 200 EAAIKGFEEILRKD-PLRVEAYHGLVMAYDGSDKKLNEVE----------------------------KRIEKAMERCKK 250 (355)
Q Consensus 200 ~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~~a~----------------------------~~~~~Al~~~~~ 250 (355)
++|+++|+++.+.+ +.+...|..+...|.+.|+ +++|. +.+++|+++++.
T Consensus 596 deA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~-~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~e 674 (1060)
T PLN03218 596 DRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGD-WDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQD 674 (1060)
T ss_pred HHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 77777777776664 3455566666666666666 22221 114455555554
Q ss_pred h--ccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCC
Q 040440 251 E--KKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKE--EPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRL--VPR 324 (355)
Q Consensus 251 ~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--~p~ 324 (355)
. .....+...+..+...|.+.|++++|+++|+++... .| +...|..+...|.+.|++++|.++|+++... .|+
T Consensus 675 M~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~P-dvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd 753 (1060)
T PLN03218 675 ARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRP-TVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPN 753 (1060)
T ss_pred HHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 2 223344555666666666667777777776666542 23 5566677777777777777777777766543 354
Q ss_pred ChhH
Q 040440 325 NHPY 328 (355)
Q Consensus 325 ~~~~ 328 (355)
...+
T Consensus 754 ~~Ty 757 (1060)
T PLN03218 754 TITY 757 (1060)
T ss_pred HHHH
Confidence 4333
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.7e-13 Score=132.60 Aligned_cols=264 Identities=13% Similarity=0.057 Sum_probs=191.4
Q ss_pred CCCCCCCcccccccCCCCCCCCCCCCcccccCCCCCCc-cchHHHHHHHHHHHHhccccccccCcccccccccccccccc
Q 040440 37 PPSSSPFKFSCIRASSSPASQQNPKPSLLRTLTPLSSP-LIKITSVTVAAAALLFMRLPFHSIKPAIAAPVAAAATVEST 115 (355)
Q Consensus 37 ~~~~~~~~~~~~~~~s~~~s~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 115 (355)
+.+...+|+++|.+.....-...+...|..+... ..| ..+...++.+++..-......+.+...+..+...+..+.++
T Consensus 451 ~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~-~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~na 529 (857)
T PLN03077 451 PEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLT-LKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNA 529 (857)
T ss_pred CCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhC-CCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechH
Confidence 3344456777777665443222222333444332 223 45555555544432111111111223333344445555555
Q ss_pred hhhhhhhhhhhccC-CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCchHHHHHHHHH
Q 040440 116 NESTKDTTSAREDV-SYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIEL--EPNEFEWQLLKAQV 192 (355)
Q Consensus 116 ~~~~~~~~~~~~~~-~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~la~~ 192 (355)
+.. .|.+. ++++|.+.|++. +.+...|..+...|.+.|+.++|+++|+++.+. .|+ ...+..+...
T Consensus 530 Li~------~y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd-~~T~~~ll~a 598 (857)
T PLN03077 530 LLD------LYVRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPD-EVTFISLLCA 598 (857)
T ss_pred HHH------HHHHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-cccHHHHHHH
Confidence 553 35556 999999999886 567899999999999999999999999999875 344 3456666677
Q ss_pred HHHcCCHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHH
Q 040440 193 QSYAGESEAAIKGFEEILRKDP--LRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVM 270 (355)
Q Consensus 193 ~~~~g~~~~A~~~~~~~~~~~p--~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~ 270 (355)
+.+.|++++|.++|+++.+..+ .+...|..+..++.+.|+ +++|.+++++....|+ ..+|..+...+..
T Consensus 599 ~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~--------~~eA~~~~~~m~~~pd-~~~~~aLl~ac~~ 669 (857)
T PLN03077 599 CSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGK--------LTEAYNFINKMPITPD-PAVWGALLNACRI 669 (857)
T ss_pred HhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCC--------HHHHHHHHHHCCCCCC-HHHHHHHHHHHHH
Confidence 9999999999999999985432 355788999999999999 9999999998654444 6667777778888
Q ss_pred ccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 040440 271 ESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRL 321 (355)
Q Consensus 271 ~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 321 (355)
.|+.+.+....+++++++|++...|..++.+|...|+|++|.+..+...+.
T Consensus 670 ~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~ 720 (857)
T PLN03077 670 HRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMREN 720 (857)
T ss_pred cCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHc
Confidence 999999999999999999999999999999999999999999999988653
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.9e-13 Score=112.51 Aligned_cols=191 Identities=18% Similarity=0.097 Sum_probs=161.6
Q ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH-------
Q 040440 147 NDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEA------- 219 (355)
Q Consensus 147 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~------- 219 (355)
....+....+.++...|++++|...--..+++++.+.++++..|.+++..++.+.|+..|++++.++|+....
T Consensus 167 ac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~ 246 (486)
T KOG0550|consen 167 ACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMP 246 (486)
T ss_pred hhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhH
Confidence 3355677888999999999999999999999999999999999999999999999999999999999987543
Q ss_pred -----HHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hccCCc----hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Q 040440 220 -----YHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSD----LRDFKLLIAQIKVMESKHSEALRVYEELVKEEP 289 (355)
Q Consensus 220 -----~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~----~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~ 289 (355)
+..-|.-..+.|. |.+|-+.+.+ +..+|. +..+|.+++.+....|+.++|+..++.++.+++
T Consensus 247 k~le~~k~~gN~~fk~G~--------y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~ 318 (486)
T KOG0550|consen 247 KKLEVKKERGNDAFKNGN--------YRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDS 318 (486)
T ss_pred HHHHHHHhhhhhHhhccc--------hhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCH
Confidence 4555666667777 6666666666 344443 455688899999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhccHH
Q 040440 290 RDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHPYREYFVDNMVATKIFGEKV 346 (355)
Q Consensus 290 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~ 346 (355)
....++...|.++..+++|++|.+.|+++++...+ ...+..+....++.+...++.
T Consensus 319 syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s-~e~r~~l~~A~~aLkkSkRkd 374 (486)
T KOG0550|consen 319 SYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD-CEIRRTLREAQLALKKSKRKD 374 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-cchHHHHHHHHHHHHHhhhhh
Confidence 99999999999999999999999999999998765 556777777777766555543
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.5e-13 Score=110.77 Aligned_cols=109 Identities=15% Similarity=0.138 Sum_probs=99.7
Q ss_pred hhhccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHH
Q 040440 124 SAREDVSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAI 203 (355)
Q Consensus 124 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 203 (355)
..++..+|++|+..|.++|+.+|.++..|.+.+.+|.+.|+++.|++.++.++.++|....+|..||.+|..+|++++|+
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~ 169 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAI 169 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHH
Confidence 34555699999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHhccCc
Q 040440 204 KGFEEILRKDPLRVEAYHGLVMAYDGSDK 232 (355)
Q Consensus 204 ~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 232 (355)
+.|+++++++|++...+..|..+-...++
T Consensus 170 ~aykKaLeldP~Ne~~K~nL~~Ae~~l~e 198 (304)
T KOG0553|consen 170 EAYKKALELDPDNESYKSNLKIAEQKLNE 198 (304)
T ss_pred HHHHhhhccCCCcHHHHHHHHHHHHHhcC
Confidence 99999999999999877776666554443
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.4e-11 Score=120.17 Aligned_cols=184 Identities=13% Similarity=0.064 Sum_probs=125.9
Q ss_pred CHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCC-CchHHHHHHHHHHHHcCCHHHHHHHHH
Q 040440 130 SYEEKEKEIEQHLAANPN-DIEALQTLMEVRIKSQKLVEAVDVIDRLIELEP-NEFEWQLLKAQVQSYAGESEAAIKGFE 207 (355)
Q Consensus 130 ~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~ 207 (355)
++++|.++++++.+.... +...|..+...|.+.|++++|.++|+++.+... .+...|..+...|.+.|++++|+++|+
T Consensus 452 ~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~ 531 (1060)
T PLN03218 452 DIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYG 531 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 777788888777765432 566777777777788888888888877776543 255667777777777788877877777
Q ss_pred HHHhhC-CCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhc----cCCchHHHHHHHHHHHHHccCHHHHHHHHH
Q 040440 208 EILRKD-PLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEK----KKSDLRDFKLLIAQIKVMESKHSEALRVYE 282 (355)
Q Consensus 208 ~~~~~~-p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 282 (355)
++.+.. ..+...|..+...|.+.|+ +++|.+++++.. ....+...+..+...|.+.|++++|+++|+
T Consensus 532 ~M~~~Gv~PD~vTYnsLI~a~~k~G~--------~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~ 603 (1060)
T PLN03218 532 IMRSKNVKPDRVVFNALISACGQSGA--------VDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQ 603 (1060)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 776653 2345667777777777777 666666666632 123345566666777777777777777777
Q ss_pred HHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 040440 283 ELVKEE-PRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRL 321 (355)
Q Consensus 283 ~~l~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 321 (355)
++.+.+ +.+...|..+...|.+.|++++|..+|+++.+.
T Consensus 604 ~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~ 643 (1060)
T PLN03218 604 MIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKK 643 (1060)
T ss_pred HHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Confidence 776654 335566777777777777777777777776654
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=99.51 E-value=8.5e-13 Score=99.20 Aligned_cols=107 Identities=17% Similarity=0.162 Sum_probs=98.8
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 040440 136 KEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPL 215 (355)
Q Consensus 136 ~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~ 215 (355)
+.+++++..+|++..+...+|..+...|++++|+..+++++..+|.+..++..+|.++...|++++|+..++++++.+|+
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 83 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD 83 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 46888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh
Q 040440 216 RVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK 250 (355)
Q Consensus 216 ~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~ 250 (355)
+...++.+|.++...|+ +++|+..++.
T Consensus 84 ~~~~~~~la~~~~~~g~--------~~~A~~~~~~ 110 (135)
T TIGR02552 84 DPRPYFHAAECLLALGE--------PESALKALDL 110 (135)
T ss_pred ChHHHHHHHHHHHHcCC--------HHHHHHHHHH
Confidence 99999999999999998 6666555554
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=3.9e-13 Score=131.52 Aligned_cols=277 Identities=14% Similarity=0.071 Sum_probs=156.7
Q ss_pred cccCCCCCCCCCcccccccCCCCCCCCCCCCcccccCCCCCCc-cchHHHHHHHHHHHHhccccccccCccccccccccc
Q 040440 32 ISLRTPPSSSPFKFSCIRASSSPASQQNPKPSLLRTLTPLSSP-LIKITSVTVAAAALLFMRLPFHSIKPAIAAPVAAAA 110 (355)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~s~~~s~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 110 (355)
++...+.++..+++++|.++....-...+...+..+...+..| .+++..++.++...--.....+.+......+...+.
T Consensus 244 lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~ 323 (857)
T PLN03077 244 VFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDV 323 (857)
T ss_pred HHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccch
Confidence 3444455555678888887776644444445556665555555 566666665554320000000111122222333333
Q ss_pred ccccchhhhhhhhhhhccC-CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcC--CCch----
Q 040440 111 TVESTNESTKDTTSAREDV-SYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELE--PNEF---- 183 (355)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~~~---- 183 (355)
..-+++. ..|.+. ++++|.++|+++.. .+...|..+...|.+.|++++|+++|+++.+.. |+..
T Consensus 324 ~~~n~Li------~~y~k~g~~~~A~~vf~~m~~---~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ 394 (857)
T PLN03077 324 SVCNSLI------QMYLSLGSWGEAEKVFSRMET---KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIAS 394 (857)
T ss_pred HHHHHHH------HHHHhcCCHHHHHHHHhhCCC---CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHH
Confidence 3223332 224444 77777777777542 345667777777777777777777777765442 3321
Q ss_pred ------------------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCch
Q 040440 184 ------------------------------EWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKK 233 (355)
Q Consensus 184 ------------------------------~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 233 (355)
.++..+...|.+.|++++|.+.|+++.+ .+...|..+...|...|+
T Consensus 395 ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~d~vs~~~mi~~~~~~g~- 470 (857)
T PLN03077 395 VLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE---KDVISWTSIIAGLRLNNR- 470 (857)
T ss_pred HHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHCCC-
Confidence 1233334445555555555555554432 233345555555555554
Q ss_pred HHHHHHHHHHHHHHHHhh--ccCCchHH----------------------------------HHHHHHHHHHHccCHHHH
Q 040440 234 LNEVEKRIEKAMERCKKE--KKKSDLRD----------------------------------FKLLIAQIKVMESKHSEA 277 (355)
Q Consensus 234 ~~~a~~~~~~Al~~~~~~--~~~~~~~~----------------------------------~~~~la~~~~~~g~~~~A 277 (355)
+++|+.++++. ...|+... +...+...|.+.|++++|
T Consensus 471 -------~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A 543 (857)
T PLN03077 471 -------CFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYA 543 (857)
T ss_pred -------HHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHH
Confidence 44555555552 11222221 223455788888999999
Q ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCChhHHHHH
Q 040440 278 LRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRR--LVPRNHPYREYF 332 (355)
Q Consensus 278 ~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~~ 332 (355)
...|++. +.+...|..+...|.+.|+.++|+++|++..+ ..|+..++...+
T Consensus 544 ~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll 596 (857)
T PLN03077 544 WNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLL 596 (857)
T ss_pred HHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHH
Confidence 8888876 45788899999999999999999999998876 457766654443
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.49 E-value=2e-11 Score=104.83 Aligned_cols=152 Identities=18% Similarity=0.112 Sum_probs=107.7
Q ss_pred CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 040440 146 PNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVM 225 (355)
Q Consensus 146 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 225 (355)
|....+++..+..++..|++++|+..++..+...|+++..+...+.++...|+.++|.+.+++++..+|+....+..+|+
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~ 382 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQ 382 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHH
Confidence 44556666777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHhccCchHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 040440 226 AYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTL 304 (355)
Q Consensus 226 ~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~ 304 (355)
.+...|+ +.+|+.+++. ...+|+++..|..+++.|..+|+..+|.. ..+..|..
T Consensus 383 all~~g~--------~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~-----------------A~AE~~~~ 437 (484)
T COG4783 383 ALLKGGK--------PQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALL-----------------ARAEGYAL 437 (484)
T ss_pred HHHhcCC--------hHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHH-----------------HHHHHHHh
Confidence 7777777 6677777766 56667777777777777777776554443 34556666
Q ss_pred cCCHHHHHHHHHHHHHhC
Q 040440 305 LRKKDEAEKQFEKFRRLV 322 (355)
Q Consensus 305 ~g~~~~A~~~~~~~l~~~ 322 (355)
.|++++|+..+..+.+..
T Consensus 438 ~G~~~~A~~~l~~A~~~~ 455 (484)
T COG4783 438 AGRLEQAIIFLMRASQQV 455 (484)
T ss_pred CCCHHHHHHHHHHHHHhc
Confidence 777778877777777765
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.48 E-value=5.2e-12 Score=105.91 Aligned_cols=192 Identities=14% Similarity=0.069 Sum_probs=158.7
Q ss_pred hccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHH
Q 040440 126 REDVSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKG 205 (355)
Q Consensus 126 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 205 (355)
|..+++++|+-.|+++.-.+|.+...+-..|..+...|++++--......+..+.....-|+--+...+..+++..|+.+
T Consensus 243 ~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~ 322 (564)
T KOG1174|consen 243 YYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNF 322 (564)
T ss_pred hhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHH
Confidence 44569999999999999999999999999999999999999999999999988877778888889999999999999999
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHHHccCH----------
Q 040440 206 FEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQIKVMESKH---------- 274 (355)
Q Consensus 206 ~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~~~g~~---------- 274 (355)
-+++++.+|++..++...|.++...++ .++|+-.|+. ....|...+.|..+..+|...|++
T Consensus 323 ~eK~I~~~~r~~~alilKG~lL~~~~R--------~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~ 394 (564)
T KOG1174|consen 323 VEKCIDSEPRNHEALILKGRLLIALER--------HTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWT 394 (564)
T ss_pred HHHHhccCcccchHHHhccHHHHhccc--------hHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHH
Confidence 999999999999999999999999999 4444444444 333455556666666655555544
Q ss_pred --------------------------HHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 040440 275 --------------------------SEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRN 325 (355)
Q Consensus 275 --------------------------~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~ 325 (355)
++|.+++++++++.|....+-..++.++...|.+++++..+++++...|++
T Consensus 395 ~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~ 471 (564)
T KOG1174|consen 395 IRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDV 471 (564)
T ss_pred HHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcccc
Confidence 455566666666777777778888888999999999999999999888875
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.48 E-value=9.4e-12 Score=106.82 Aligned_cols=148 Identities=21% Similarity=0.244 Sum_probs=133.5
Q ss_pred hhhccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHH
Q 040440 124 SAREDVSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAI 203 (355)
Q Consensus 124 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 203 (355)
+.|..+++++|+..++..+...|+|+..+...+.+++..|+..+|.+.+++++.++|+....+.++|..+.+.|++.+|+
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai 394 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAI 394 (484)
T ss_pred HHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHH
Confidence 34666799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHccCHHHHHHHHHH
Q 040440 204 KGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEE 283 (355)
Q Consensus 204 ~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 283 (355)
..++..+..+|+++..|..++..|...|+ -.++ ....+..|...|++++|+..+..
T Consensus 395 ~~L~~~~~~~p~dp~~w~~LAqay~~~g~--------~~~a----------------~~A~AE~~~~~G~~~~A~~~l~~ 450 (484)
T COG4783 395 RILNRYLFNDPEDPNGWDLLAQAYAELGN--------RAEA----------------LLARAEGYALAGRLEQAIIFLMR 450 (484)
T ss_pred HHHHHHhhcCCCCchHHHHHHHHHHHhCc--------hHHH----------------HHHHHHHHHhCCCHHHHHHHHHH
Confidence 99999999999999999999999999987 3333 34458888999999999999999
Q ss_pred HHHhCCCChHHH
Q 040440 284 LVKEEPRDFRPY 295 (355)
Q Consensus 284 ~l~~~~~~~~~~ 295 (355)
+.+....+...|
T Consensus 451 A~~~~~~~~~~~ 462 (484)
T COG4783 451 ASQQVKLGFPDW 462 (484)
T ss_pred HHHhccCCcHHH
Confidence 988765444444
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.47 E-value=3.2e-11 Score=98.18 Aligned_cols=205 Identities=14% Similarity=0.102 Sum_probs=146.3
Q ss_pred ccccccchhhhhhhhhhhccC-CHHHHHHHHHHHHHcCCC-----CHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCc
Q 040440 109 AATVESTNESTKDTTSAREDV-SYEEKEKEIEQHLAANPN-----DIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNE 182 (355)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~~l~~~p~-----~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~ 182 (355)
++....+...+.++ |... +.+.|+.+-+..++ .|+ ...+...+|.-|...|-+|.|...|....+...--
T Consensus 65 d~~t~e~~ltLGnL---fRsRGEvDRAIRiHQ~L~~-spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa 140 (389)
T COG2956 65 DPETFEAHLTLGNL---FRSRGEVDRAIRIHQTLLE-SPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFA 140 (389)
T ss_pred CchhhHHHHHHHHH---HHhcchHHHHHHHHHHHhc-CCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhh
Confidence 33333334444444 4444 88888887776665 333 24567778888888888888888888877655555
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH-----HHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hccCCc
Q 040440 183 FEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRV-----EAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSD 256 (355)
Q Consensus 183 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~-----~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~ 256 (355)
..+...+..+|....+|++|++.-++..++.++.. ..+..++..+....+ .++|+..+++ ...++.
T Consensus 141 ~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~--------~d~A~~~l~kAlqa~~~ 212 (389)
T COG2956 141 EGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSD--------VDRARELLKKALQADKK 212 (389)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhh--------HHHHHHHHHHHHhhCcc
Confidence 56777788888888888888888888888776543 335677777766666 5555555555 455777
Q ss_pred hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 040440 257 LRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRD-FRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRN 325 (355)
Q Consensus 257 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~ 325 (355)
...+-..+|+++...|+|++|++.++.+++.+|+. +.+...+..+|.+.|+.++.+..+.++.+..++.
T Consensus 213 cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~ 282 (389)
T COG2956 213 CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGA 282 (389)
T ss_pred ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCc
Confidence 77777888888888888888888888888887764 4567777888888888888888888888777654
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.1e-10 Score=95.87 Aligned_cols=167 Identities=17% Similarity=0.191 Sum_probs=129.4
Q ss_pred hhccCCHHHHHHHHHHHHHcCCCCHHH---HHHHHHHHHHccCHHHHHHHHHHHHHcCCCch---HHHHHHHHHHHHcC-
Q 040440 125 AREDVSYEEKEKEIEQHLAANPNDIEA---LQTLMEVRIKSQKLVEAVDVIDRLIELEPNEF---EWQLLKAQVQSYAG- 197 (355)
Q Consensus 125 ~~~~~~~~~A~~~~~~~l~~~p~~~~~---~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~la~~~~~~g- 197 (355)
.+..+++++|++.|++++...|....+ .+.+|.+|++.+++++|+..+++.++.+|+++ .+++.+|.++...+
T Consensus 42 ~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~ 121 (243)
T PRK10866 42 KLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMALDD 121 (243)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhcch
Confidence 366679999999999999999987654 48899999999999999999999999988665 46888887754443
Q ss_pred --------------C---HHHHHHHHHHHHhhCCCCHHH---HHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCch
Q 040440 198 --------------E---SEAAIKGFEEILRKDPLRVEA---YHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDL 257 (355)
Q Consensus 198 --------------~---~~~A~~~~~~~~~~~p~~~~~---~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~ 257 (355)
| ..+|++.|++.++..|+..-+ ...+..+..+.
T Consensus 122 ~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~l--------------------------- 174 (243)
T PRK10866 122 SALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRL--------------------------- 174 (243)
T ss_pred hhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHH---------------------------
Confidence 1 246888999999999987533 22222221111
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 040440 258 RDFKLLIAQIKVMESKHSEALRVYEELVKEEPRD---FRPYLCQGIIYTLLRKKDEAEKQFEKF 318 (355)
Q Consensus 258 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~ 318 (355)
..--+.+|..|.+.|.|..|+..++.+++..|+. .+++..++..|..+|..++|.......
T Consensus 175 a~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 175 AKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 1123456999999999999999999999998864 578899999999999999998877644
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.46 E-value=8.5e-12 Score=101.53 Aligned_cols=137 Identities=15% Similarity=0.170 Sum_probs=107.1
Q ss_pred HHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHH
Q 040440 165 LVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKA 244 (355)
Q Consensus 165 ~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A 244 (355)
.+.-+.-++.-+..+|++.+-|..||.+|..+|++..|...|.+++++.|++++.+..++.++....+
T Consensus 138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~------------ 205 (287)
T COG4235 138 MEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAG------------ 205 (287)
T ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC------------
Confidence 34455556666777788888888888888888888888888888888888888888777777655543
Q ss_pred HHHHHhhccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 040440 245 MERCKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPR 324 (355)
Q Consensus 245 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~ 324 (355)
...-.++...+++++..+|.+..+.+.+|..++..|+|.+|...|+..++..|.
T Consensus 206 --------------------------~~~ta~a~~ll~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~ 259 (287)
T COG4235 206 --------------------------QQMTAKARALLRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPA 259 (287)
T ss_pred --------------------------CcccHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCC
Confidence 244567888889999999999999999999999999999999999999999888
Q ss_pred ChhHHHHHHHHHHHH
Q 040440 325 NHPYREYFVDNMVAT 339 (355)
Q Consensus 325 ~~~~~~~~~~~~~~~ 339 (355)
+.+.+..+...+...
T Consensus 260 ~~~rr~~ie~~ia~~ 274 (287)
T COG4235 260 DDPRRSLIERSIARA 274 (287)
T ss_pred CCchHHHHHHHHHHH
Confidence 877766666655444
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.2e-11 Score=106.45 Aligned_cols=200 Identities=18% Similarity=0.173 Sum_probs=153.2
Q ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHH
Q 040440 129 VSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEE 208 (355)
Q Consensus 129 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 208 (355)
++|++|.+...+++...|++..+......+.++.++|++|+...++-....-.+ ...+..+.|.++++..++|+..++
T Consensus 26 ~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~-~~~fEKAYc~Yrlnk~Dealk~~~- 103 (652)
T KOG2376|consen 26 GEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVIN-SFFFEKAYCEYRLNKLDEALKTLK- 103 (652)
T ss_pred hHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcc-hhhHHHHHHHHHcccHHHHHHHHh-
Confidence 499999999999999999999999999999999999999996655433221111 123688899999999999999888
Q ss_pred HHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhh-------------------------------ccCC-c
Q 040440 209 ILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKE-------------------------------KKKS-D 256 (355)
Q Consensus 209 ~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~-------------------------------~~~~-~ 256 (355)
..++.+.......++++++.|+ |++|+++|+.+ ...+ +
T Consensus 104 --~~~~~~~~ll~L~AQvlYrl~~--------ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~ 173 (652)
T KOG2376|consen 104 --GLDRLDDKLLELRAQVLYRLER--------YDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPED 173 (652)
T ss_pred --cccccchHHHHHHHHHHHHHhh--------HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcc
Confidence 4456666677778888888888 55554444431 1112 2
Q ss_pred hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-----CC--C--------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 040440 257 LRDFKLLIAQIKVMESKHSEALRVYEELVKEE-----PR--D--------FRPYLCQGIIYTLLRKKDEAEKQFEKFRRL 321 (355)
Q Consensus 257 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-----~~--~--------~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 321 (355)
..+.+++.+-+++..|+|.+|++.++++++.. .+ + ..+...++.++..+|+.++|...|...++.
T Consensus 174 syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~ 253 (652)
T KOG2376|consen 174 SYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKR 253 (652)
T ss_pred hHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh
Confidence 45678889999999999999999999995431 11 1 235678999999999999999999999999
Q ss_pred CCCChhHHHHHHHHHHHHH
Q 040440 322 VPRNHPYREYFVDNMVATK 340 (355)
Q Consensus 322 ~p~~~~~~~~~~~~~~~~~ 340 (355)
+|.|.+....+..++.+..
T Consensus 254 ~~~D~~~~Av~~NNLva~~ 272 (652)
T KOG2376|consen 254 NPADEPSLAVAVNNLVALS 272 (652)
T ss_pred cCCCchHHHHHhcchhhhc
Confidence 9999887777777766654
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.7e-11 Score=96.11 Aligned_cols=158 Identities=12% Similarity=0.070 Sum_probs=143.0
Q ss_pred HHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHH
Q 040440 167 EAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAME 246 (355)
Q Consensus 167 ~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~ 246 (355)
.+...+-+....+|++..+ ..++..+...|+-+.+..+..+....+|.+......+|....+.|+ +..|+.
T Consensus 51 ~a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~--------~~~A~~ 121 (257)
T COG5010 51 GAAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGN--------FGEAVS 121 (257)
T ss_pred HHHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcc--------hHHHHH
Confidence 3666666677789999999 9999999999999999999999999999999999889999999999 999999
Q ss_pred HHHh-hccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 040440 247 RCKK-EKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRN 325 (355)
Q Consensus 247 ~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~ 325 (355)
.+.+ ....|++..+|..+|.+|-+.|++++|...|.+++++.|.++.+..++|..+.-.|+++.|..++..+...-+.+
T Consensus 122 ~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad 201 (257)
T COG5010 122 VLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAAD 201 (257)
T ss_pred HHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCc
Confidence 9988 678899999999999999999999999999999999999999999999999999999999999999999887767
Q ss_pred hhHHHHHH
Q 040440 326 HPYREYFV 333 (355)
Q Consensus 326 ~~~~~~~~ 333 (355)
......+.
T Consensus 202 ~~v~~NLA 209 (257)
T COG5010 202 SRVRQNLA 209 (257)
T ss_pred hHHHHHHH
Confidence 55544433
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.7e-12 Score=103.69 Aligned_cols=115 Identities=30% Similarity=0.314 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhc
Q 040440 150 EALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDG 229 (355)
Q Consensus 150 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 229 (355)
+-+..-|.-+.+.++|++|+..|.++|+++|.++..|.+.+.+|.++|.++.|++.++.++.++|....+|..||.+|..
T Consensus 82 E~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~ 161 (304)
T KOG0553|consen 82 ESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLA 161 (304)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHc
Confidence 34556677777888888888888888888888888888888888888888888888888888888877777777777766
Q ss_pred cCchHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHHHcc
Q 040440 230 SDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQIKVMES 272 (355)
Q Consensus 230 ~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~~~g 272 (355)
+|+ +++|++.|++ +..+|++..++..|...-.+.+
T Consensus 162 ~gk--------~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~ 197 (304)
T KOG0553|consen 162 LGK--------YEEAIEAYKKALELDPDNESYKSNLKIAEQKLN 197 (304)
T ss_pred cCc--------HHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhc
Confidence 666 4444444433 3335555544444444433333
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=4.3e-12 Score=94.05 Aligned_cols=106 Identities=11% Similarity=0.117 Sum_probs=94.0
Q ss_pred HHcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH
Q 040440 142 LAAN-PNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAY 220 (355)
Q Consensus 142 l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 220 (355)
.... ++..+..+.+|..+...|++++|...|+-+...+|.+...|+.||.++...|+|++|+..|.+++.++|+++..+
T Consensus 27 ~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~ 106 (157)
T PRK15363 27 LDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAP 106 (157)
T ss_pred HCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHH
Confidence 3456 677888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCchHHHHHHHHHHHHHHH
Q 040440 221 HGLVMAYDGSDKKLNEVEKRIEKAMERC 248 (355)
Q Consensus 221 ~~l~~~~~~~~~~~~~a~~~~~~Al~~~ 248 (355)
+.+|.|+...|+ .+.+..-++.|+..+
T Consensus 107 ~~ag~c~L~lG~-~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 107 WAAAECYLACDN-VCYAIKALKAVVRIC 133 (157)
T ss_pred HHHHHHHHHcCC-HHHHHHHHHHHHHHh
Confidence 999999999998 666666666666665
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.6e-10 Score=104.27 Aligned_cols=199 Identities=17% Similarity=0.203 Sum_probs=147.5
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcC-----CHHH
Q 040440 127 EDVSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAG-----ESEA 201 (355)
Q Consensus 127 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g-----~~~~ 201 (355)
+.+++++|++.+++.-..-.+....+...|.++.+.|++++|...|..++..+|++...+..+..+..... +.+.
T Consensus 16 e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~~~~~~ 95 (517)
T PF12569_consen 16 EAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSDEDVEK 95 (517)
T ss_pred HCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcccccccHHH
Confidence 34699999999999888888899999999999999999999999999999999999999888888773333 5677
Q ss_pred HHHHHHHHHhhCCCCHHH------------HHHHHHHHhc----cCch--HHHHH---------HHHHHHHHH-HHhhc-
Q 040440 202 AIKGFEEILRKDPLRVEA------------YHGLVMAYDG----SDKK--LNEVE---------KRIEKAMER-CKKEK- 252 (355)
Q Consensus 202 A~~~~~~~~~~~p~~~~~------------~~~l~~~~~~----~~~~--~~~a~---------~~~~~Al~~-~~~~~- 252 (355)
-..+|++.....|..... +...+..|.. .|-. +.... ....+.+.- .....
T Consensus 96 ~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~ 175 (517)
T PF12569_consen 96 LLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEEYVNSLES 175 (517)
T ss_pred HHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHHHHHhhcc
Confidence 788888887777653221 1112222211 1100 00000 111111111 11110
Q ss_pred -----------cCCchH--HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 040440 253 -----------KKSDLR--DFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFR 319 (355)
Q Consensus 253 -----------~~~~~~--~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 319 (355)
..+... .+++.++..|-..|++++|+++++++++..|..++.|+..|.++...|++.+|.++++.+.
T Consensus 176 ~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar 255 (517)
T PF12569_consen 176 NGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEAR 255 (517)
T ss_pred cCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 112222 3567889999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCC
Q 040440 320 RLVPRN 325 (355)
Q Consensus 320 ~~~p~~ 325 (355)
.+++.|
T Consensus 256 ~LD~~D 261 (517)
T PF12569_consen 256 ELDLAD 261 (517)
T ss_pred hCChhh
Confidence 999876
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=5.7e-12 Score=109.84 Aligned_cols=107 Identities=20% Similarity=0.119 Sum_probs=100.9
Q ss_pred hhhccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHH
Q 040440 124 SAREDVSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAI 203 (355)
Q Consensus 124 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 203 (355)
.++..++|++|+..|+++++.+|++..++..+|.+|...|++++|+..+++++.++|++..+++.+|.++...|++++|+
T Consensus 11 ~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~ 90 (356)
T PLN03088 11 EAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAK 90 (356)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHH
Confidence 45677799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHhcc
Q 040440 204 KGFEEILRKDPLRVEAYHGLVMAYDGS 230 (355)
Q Consensus 204 ~~~~~~~~~~p~~~~~~~~l~~~~~~~ 230 (355)
..|+++++++|++..+...++.+....
T Consensus 91 ~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 91 AALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 999999999999999988888775544
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.6e-10 Score=96.84 Aligned_cols=200 Identities=16% Similarity=0.122 Sum_probs=147.5
Q ss_pred hccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC-chHHHHHHHHHHHHcCCHHHHHH
Q 040440 126 REDVSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPN-EFEWQLLKAQVQSYAGESEAAIK 204 (355)
Q Consensus 126 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~ 204 (355)
+..++|.+|++...+.-+..+....++..-+.+--++||++.|-.++.++-+..++ .......++.+....|+++.|..
T Consensus 95 l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 95 LFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred HhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 55568999999999888877777778888888888899999999999998887443 33467778888888899999999
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHhccCchHHHH-----------------------------------------------
Q 040440 205 GFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEV----------------------------------------------- 237 (355)
Q Consensus 205 ~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a----------------------------------------------- 237 (355)
-..++.+..|.++.+......+|...|+. .+.
T Consensus 175 ~v~~ll~~~pr~~~vlrLa~r~y~~~g~~-~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~ 253 (400)
T COG3071 175 NVDQLLEMTPRHPEVLRLALRAYIRLGAW-QALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWK 253 (400)
T ss_pred HHHHHHHhCcCChHHHHHHHHHHHHhccH-HHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 99999999999998888888888888873 222
Q ss_pred ----------------------HHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHH
Q 040440 238 ----------------------EKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPY 295 (355)
Q Consensus 238 ----------------------~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~ 295 (355)
.+..++|.++.++.-+...+..+...++ ...-++++.=++..++.++..|+++..+
T Consensus 254 ~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~--~l~~~d~~~l~k~~e~~l~~h~~~p~L~ 331 (400)
T COG3071 254 NQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIP--RLRPGDPEPLIKAAEKWLKQHPEDPLLL 331 (400)
T ss_pred hccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHh--hcCCCCchHHHHHHHHHHHhCCCChhHH
Confidence 1222333333333111111111111111 1233666677888999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhH
Q 040440 296 LCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHPY 328 (355)
Q Consensus 296 ~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 328 (355)
..+|..|.+.+.|.+|..+|+.+++..|+..++
T Consensus 332 ~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~ 364 (400)
T COG3071 332 STLGRLALKNKLWGKASEALEAALKLRPSASDY 364 (400)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhH
Confidence 999999999999999999999999998876554
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=99.41 E-value=4.3e-11 Score=96.08 Aligned_cols=164 Identities=21% Similarity=0.217 Sum_probs=111.6
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCc---hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH---HHHH
Q 040440 148 DIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNE---FEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRV---EAYH 221 (355)
Q Consensus 148 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~ 221 (355)
+...++..|..++..|+|++|+..|++++...|.. ..+.+.+|.++...|++++|+..+++.++..|+++ .+++
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y 83 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALY 83 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHH
Confidence 46788999999999999999999999999987764 45799999999999999999999999999998764 5688
Q ss_pred HHHHHHhccCchH---HHHHHHHHHHHHHHHh-hccCCchHH-----------------HHHHHHHHHHHccCHHHHHHH
Q 040440 222 GLVMAYDGSDKKL---NEVEKRIEKAMERCKK-EKKKSDLRD-----------------FKLLIAQIKVMESKHSEALRV 280 (355)
Q Consensus 222 ~l~~~~~~~~~~~---~~a~~~~~~Al~~~~~-~~~~~~~~~-----------------~~~~la~~~~~~g~~~~A~~~ 280 (355)
.+|.++....... +.-.....+|+..++. +...|+... --+.+|..|.+.|.|..|+..
T Consensus 84 ~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r 163 (203)
T PF13525_consen 84 MLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIR 163 (203)
T ss_dssp HHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHH
T ss_pred HHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHH
Confidence 8888876654433 3333445555555555 233332211 123356677777777777777
Q ss_pred HHHHHHhCCCCh---HHHHHHHHHHHHcCCHHHH
Q 040440 281 YEELVKEEPRDF---RPYLCQGIIYTLLRKKDEA 311 (355)
Q Consensus 281 ~~~~l~~~~~~~---~~~~~l~~~~~~~g~~~~A 311 (355)
++.+++..|+.. .++..++..|.++|..+.|
T Consensus 164 ~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 164 FQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 777777777643 4566677777777776644
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.4e-10 Score=95.68 Aligned_cols=195 Identities=15% Similarity=0.138 Sum_probs=151.3
Q ss_pred hccCCHHHHHHHHHHHHHcCCCCH-HHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHH
Q 040440 126 REDVSYEEKEKEIEQHLAANPNDI-EALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIK 204 (355)
Q Consensus 126 ~~~~~~~~A~~~~~~~l~~~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 204 (355)
..+.||..|+.+++-.+..+.+.. ..-..+|.+++..|+|++|+..|.-+.+.+.-+.+.+.+++.+++.+|.|.+|..
T Consensus 33 ls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~ 112 (557)
T KOG3785|consen 33 LSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKS 112 (557)
T ss_pred HhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHH
Confidence 344699999999998886555433 5667889999999999999999999988777777899999999999999999977
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 040440 205 GFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEEL 284 (355)
Q Consensus 205 ~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 284 (355)
...+ .|+++-....+..+..+.++ -++-+.+-+.+. +..+-...+|.+.+..-.|++|+++|+++
T Consensus 113 ~~~k----a~k~pL~~RLlfhlahklnd--------Ek~~~~fh~~Lq---D~~EdqLSLAsvhYmR~HYQeAIdvYkrv 177 (557)
T KOG3785|consen 113 IAEK----APKTPLCIRLLFHLAHKLND--------EKRILTFHSSLQ---DTLEDQLSLASVHYMRMHYQEAIDVYKRV 177 (557)
T ss_pred HHhh----CCCChHHHHHHHHHHHHhCc--------HHHHHHHHHHHh---hhHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 6555 46666666666666666666 222222222222 22344567788888888999999999999
Q ss_pred HHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHH
Q 040440 285 VKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHPYREYFVDN 335 (355)
Q Consensus 285 l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~ 335 (355)
+..+|+.......++.+|.++.-++-+.+.+.-.+...|+.+....+..-.
T Consensus 178 L~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn 228 (557)
T KOG3785|consen 178 LQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACN 228 (557)
T ss_pred HhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 999998888888999999999999999999999999999875554443333
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.4e-10 Score=106.28 Aligned_cols=165 Identities=12% Similarity=0.086 Sum_probs=144.4
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHh
Q 040440 149 IEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYD 228 (355)
Q Consensus 149 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 228 (355)
...+...|+..+..|++++|.+++.++|+.+|.+..+|..||.+|.+.|+.+++...+-.+-.++|.+.+.|..++....
T Consensus 139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~ 218 (895)
T KOG2076|consen 139 LRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSE 218 (895)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 44566777788888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCchHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCh-----HHHHHHHHHH
Q 040440 229 GSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDF-----RPYLCQGIIY 302 (355)
Q Consensus 229 ~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~-----~~~~~l~~~~ 302 (355)
.+|. +++|+-++.+ +...|.+..+....+.+|.+.|+...|...|.+++...|... ......+..+
T Consensus 219 ~~~~--------i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~ 290 (895)
T KOG2076|consen 219 QLGN--------INQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYF 290 (895)
T ss_pred hccc--------HHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHH
Confidence 9998 6666666666 556889999999999999999999999999999999988321 2234457778
Q ss_pred HHcCCHHHHHHHHHHHHHh
Q 040440 303 TLLRKKDEAEKQFEKFRRL 321 (355)
Q Consensus 303 ~~~g~~~~A~~~~~~~l~~ 321 (355)
...++-+.|.+.++.++..
T Consensus 291 ~~~~~~e~a~~~le~~~s~ 309 (895)
T KOG2076|consen 291 ITHNERERAAKALEGALSK 309 (895)
T ss_pred HHhhHHHHHHHHHHHHHhh
Confidence 8888889999999999883
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.39 E-value=2e-11 Score=102.45 Aligned_cols=153 Identities=19% Similarity=0.221 Sum_probs=137.2
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchH------------HHHHHHHHHHHcC
Q 040440 130 SYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFE------------WQLLKAQVQSYAG 197 (355)
Q Consensus 130 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~------------~~~~la~~~~~~g 197 (355)
++++|...--.+++.++.+.++++..|.+++..++.+.|+..|++++.++|+... .+...|.-.++.|
T Consensus 184 ~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G 263 (486)
T KOG0550|consen 184 DYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNG 263 (486)
T ss_pred cchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhcc
Confidence 8999999999999999999999999999999999999999999999999998654 3566788889999
Q ss_pred CHHHHHHHHHHHHhhCCCCH----HHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHHHcc
Q 040440 198 ESEAAIKGFEEILRKDPLRV----EAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQIKVMES 272 (355)
Q Consensus 198 ~~~~A~~~~~~~~~~~p~~~----~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~~~g 272 (355)
++.+|.+.|.+++.++|.+. ..|.+++.+..+.|+ .++|+.-++. ...++.....+...|.++...+
T Consensus 264 ~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgr--------l~eaisdc~~Al~iD~syikall~ra~c~l~le 335 (486)
T KOG0550|consen 264 NYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGR--------LREAISDCNEALKIDSSYIKALLRRANCHLALE 335 (486)
T ss_pred chhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCC--------chhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999754 458889999999999 7777777766 5668888889999999999999
Q ss_pred CHHHHHHHHHHHHHhCCC
Q 040440 273 KHSEALRVYEELVKEEPR 290 (355)
Q Consensus 273 ~~~~A~~~~~~~l~~~~~ 290 (355)
+|++|++.|+++++...+
T Consensus 336 ~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 336 KWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred HHHHHHHHHHHHHhhccc
Confidence 999999999999987664
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.3e-11 Score=112.11 Aligned_cols=187 Identities=14% Similarity=0.049 Sum_probs=152.2
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 040440 130 SYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEI 209 (355)
Q Consensus 130 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 209 (355)
+...|...+-+++..++....++..+|.+|...-+...|..+|+++.++++.+..++-..+..|....++++|....-.+
T Consensus 473 ~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~ 552 (1238)
T KOG1127|consen 473 NSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRA 552 (1238)
T ss_pred hHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHH
Confidence 66778888888888888888888888888888888888888888888888888888888888888888888888886666
Q ss_pred HhhCCCC--HHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 040440 210 LRKDPLR--VEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVK 286 (355)
Q Consensus 210 ~~~~p~~--~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 286 (355)
-+..|.. ...|..+|..|...++ +.+++..++. ...+|.+...|..+|.+|...|+|..|++.|.++..
T Consensus 553 ~qka~a~~~k~nW~~rG~yyLea~n--------~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~ 624 (1238)
T KOG1127|consen 553 AQKAPAFACKENWVQRGPYYLEAHN--------LHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASL 624 (1238)
T ss_pred hhhchHHHHHhhhhhccccccCccc--------hhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHh
Confidence 5555532 2345667777777777 6777777766 667888888899999999999999999999999988
Q ss_pred hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 040440 287 EEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPR 324 (355)
Q Consensus 287 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~ 324 (355)
++|.+....+..+.+...+|+|.+|+..+...+.....
T Consensus 625 LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~ 662 (1238)
T KOG1127|consen 625 LRPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSL 662 (1238)
T ss_pred cCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 88888888888888888899999998888887765443
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=4.2e-11 Score=88.84 Aligned_cols=111 Identities=11% Similarity=0.011 Sum_probs=100.7
Q ss_pred HhhC-CCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 040440 210 LRKD-PLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKE 287 (355)
Q Consensus 210 ~~~~-p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 287 (355)
..+. ++..+..+.++..+...|+ +++|..+++- ...++.+...|+.||.++..+|+|++|+..|.+++.+
T Consensus 27 ~~~~~~~~l~~lY~~A~~ly~~G~--------l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L 98 (157)
T PRK15363 27 LDDDVTQPLNTLYRYAMQLMEVKE--------FAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQI 98 (157)
T ss_pred HCCChHHHHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 3445 6778889999999999999 9999999988 6778999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhH
Q 040440 288 EPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHPY 328 (355)
Q Consensus 288 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 328 (355)
+|+++.+++++|.++...|+.+.|++.|+.++...-.++.+
T Consensus 99 ~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~~~~~~ 139 (157)
T PRK15363 99 KIDAPQAPWAAAECYLACDNVCYAIKALKAVVRICGEVSEH 139 (157)
T ss_pred CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccChhH
Confidence 99999999999999999999999999999999987444333
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.1e-10 Score=98.85 Aligned_cols=176 Identities=15% Similarity=0.143 Sum_probs=133.5
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHcCC--Cc----hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--CC----HHH
Q 040440 152 LQTLMEVRIKSQKLVEAVDVIDRLIELEP--NE----FEWQLLKAQVQSYAGESEAAIKGFEEILRKDP--LR----VEA 219 (355)
Q Consensus 152 ~~~la~~~~~~g~~~~A~~~~~~~~~~~~--~~----~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p--~~----~~~ 219 (355)
+...|..|...|+|++|.+.|.++....- ++ ...+...+.++... ++++|+++|++++.+.- +. ...
T Consensus 38 y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~~ 116 (282)
T PF14938_consen 38 YEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAAKC 116 (282)
T ss_dssp HHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHHHH
T ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 44457788899999999999999876521 11 12456666766555 99999999999998742 22 345
Q ss_pred HHHHHHHHhcc-CchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------h
Q 040440 220 YHGLVMAYDGS-DKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRD------F 292 (355)
Q Consensus 220 ~~~l~~~~~~~-~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~------~ 292 (355)
+..+|.+|... |+ ++.|...|++|+++++..........++..+|.++...|+|++|++.|+++....-++ .
T Consensus 117 ~~~lA~~ye~~~~d-~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~ 195 (282)
T PF14938_consen 117 LKELAEIYEEQLGD-YEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSA 195 (282)
T ss_dssp HHHHHHHHCCTT---HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHH
T ss_pred HHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhH
Confidence 78999999988 66 9999999999999999866556667788999999999999999999999998754321 1
Q ss_pred -HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHH
Q 040440 293 -RPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHPYR 329 (355)
Q Consensus 293 -~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~ 329 (355)
..++..+.++...|+...|...+++....+|.-...+
T Consensus 196 ~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~ 233 (282)
T PF14938_consen 196 KEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSR 233 (282)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcH
Confidence 3456778899999999999999999999988654433
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.2e-10 Score=103.14 Aligned_cols=196 Identities=17% Similarity=0.181 Sum_probs=137.2
Q ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHH
Q 040440 129 VSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEE 208 (355)
Q Consensus 129 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 208 (355)
++-++|....+.++..++....+|..+|.++....+|++|+++|+.++..+|++..+|..++.+..+.++++.....-.+
T Consensus 55 g~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~ 134 (700)
T KOG1156|consen 55 GKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQ 134 (700)
T ss_pred cchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 46677777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHhhCCCCHHHHHHHHHHHhccCchHHHH-----------------------------------HHHHHHHHHHHHh-hc
Q 040440 209 ILRKDPLRVEAYHGLVMAYDGSDKKLNEV-----------------------------------EKRIEKAMERCKK-EK 252 (355)
Q Consensus 209 ~~~~~p~~~~~~~~l~~~~~~~~~~~~~a-----------------------------------~~~~~~Al~~~~~-~~ 252 (355)
.++..|.....|..++..+...|+. ..+ .+.+++|++.+.. ..
T Consensus 135 LLql~~~~ra~w~~~Avs~~L~g~y-~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~ 213 (700)
T KOG1156|consen 135 LLQLRPSQRASWIGFAVAQHLLGEY-KMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEK 213 (700)
T ss_pred HHHhhhhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhh
Confidence 7777777777777666666655552 211 1225566665555 23
Q ss_pred cCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHH-HHHHHHHHhCCCC
Q 040440 253 KKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAE-KQFEKFRRLVPRN 325 (355)
Q Consensus 253 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~l~~~p~~ 325 (355)
...+...+....+.++.+++++++|..+|...+..+|++...+..+-.++.+-.+.-++. ..|...-+..|..
T Consensus 214 ~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~ 287 (700)
T KOG1156|consen 214 QIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRH 287 (700)
T ss_pred HHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCccc
Confidence 334445556778999999999999999999999999999998888877775333334444 5666655555543
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=99.36 E-value=9.4e-11 Score=88.93 Aligned_cols=116 Identities=16% Similarity=0.099 Sum_probs=83.8
Q ss_pred HccCHHHHHHHHHHHHHcCCCc---hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHhccCchH
Q 040440 161 KSQKLVEAVDVIDRLIELEPNE---FEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLR---VEAYHGLVMAYDGSDKKL 234 (355)
Q Consensus 161 ~~g~~~~A~~~~~~~~~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~~~~~ 234 (355)
..++...+...+++++..+|+. ..+.+.+|.+++..|++++|+..|++++...++. ..+...++.++...|+
T Consensus 23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~-- 100 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQ-- 100 (145)
T ss_pred HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCC--
Confidence 5788888888899988888877 3467788899999999999999999999877554 2345566666666666
Q ss_pred HHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 040440 235 NEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEEL 284 (355)
Q Consensus 235 ~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 284 (355)
+++|+..++.....+....++..+|.+|...|++++|+..|+++
T Consensus 101 ------~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 101 ------YDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred ------HHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 66666666554444455555666666666666666666666655
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.1e-10 Score=110.16 Aligned_cols=161 Identities=11% Similarity=0.082 Sum_probs=111.2
Q ss_pred HcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH-----
Q 040440 143 AANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRV----- 217 (355)
Q Consensus 143 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~----- 217 (355)
..+|.+..+|..++..|...|++++|+..++..++..|+....++.+|.++.+.+++.++.-. .++...+.+.
T Consensus 25 ~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~v 102 (906)
T PRK14720 25 NYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIV 102 (906)
T ss_pred cCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHH
Confidence 367889999999999999999999999999999999999999999999999999998887666 6665554443
Q ss_pred --------------HHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHHHccCHHHHHHHHH
Q 040440 218 --------------EAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQIKVMESKHSEALRVYE 282 (355)
Q Consensus 218 --------------~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 282 (355)
.+++.+|.||..+|+ .+++...+++ +..++.+..+..++|..|... +.++|++++.
T Consensus 103 e~~~~~i~~~~~~k~Al~~LA~~Ydk~g~--------~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~ 173 (906)
T PRK14720 103 EHICDKILLYGENKLALRTLAEAYAKLNE--------NKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLK 173 (906)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHcCC--------hHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHH
Confidence 455555555555555 4444444444 333455555555555555555 5555555555
Q ss_pred HHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhH
Q 040440 283 ELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHPY 328 (355)
Q Consensus 283 ~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 328 (355)
+++.. +...+++.++.+++++.+..+|++.++
T Consensus 174 KAV~~--------------~i~~kq~~~~~e~W~k~~~~~~~d~d~ 205 (906)
T PRK14720 174 KAIYR--------------FIKKKQYVGIEEIWSKLVHYNSDDFDF 205 (906)
T ss_pred HHHHH--------------HHhhhcchHHHHHHHHHHhcCcccchH
Confidence 55543 444445555555555556666665443
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.7e-11 Score=103.12 Aligned_cols=188 Identities=14% Similarity=0.102 Sum_probs=144.9
Q ss_pred CHHHHHHHHHHHHHcC-C-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHH
Q 040440 130 SYEEKEKEIEQHLAAN-P-NDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFE 207 (355)
Q Consensus 130 ~~~~A~~~~~~~l~~~-p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 207 (355)
+-+.++..+++.+... + .+.......|.++...|++++|++.+.+. .+.+.......++...++++.|.+.++
T Consensus 81 ~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~ 155 (290)
T PF04733_consen 81 DKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELK 155 (290)
T ss_dssp THHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred chHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5556666666555432 2 34556667778888999999999998764 567788888899999999999999999
Q ss_pred HHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhh-ccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 040440 208 EILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKE-KKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVK 286 (355)
Q Consensus 208 ~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 286 (355)
.+.+.+.+..-....-+.+....|. +.+++|.-+|+++ ...+..+.++..++.++..+|+|++|.+.+++++.
T Consensus 156 ~~~~~~eD~~l~qLa~awv~l~~g~------e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~ 229 (290)
T PF04733_consen 156 NMQQIDEDSILTQLAEAWVNLATGG------EKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALE 229 (290)
T ss_dssp HHHCCSCCHHHHHHHHHHHHHHHTT------TCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCC
T ss_pred HHHhcCCcHHHHHHHHHHHHHHhCc------hhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 9999887766665555555544442 1178888888884 44567788899999999999999999999999999
Q ss_pred hCCCChHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhCCCChhH
Q 040440 287 EEPRDFRPYLCQGIIYTLLRKK-DEAEKQFEKFRRLVPRNHPY 328 (355)
Q Consensus 287 ~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~l~~~p~~~~~ 328 (355)
.+|++++++.+++.+...+|+. +.+.+++.+....+|+++-.
T Consensus 230 ~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~~ 272 (290)
T PF04733_consen 230 KDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPLV 272 (290)
T ss_dssp C-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHHH
T ss_pred hccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCChHH
Confidence 9999999999999999999998 67888999998899986444
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=8.1e-11 Score=102.66 Aligned_cols=113 Identities=20% Similarity=0.145 Sum_probs=86.5
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccC
Q 040440 152 LQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSD 231 (355)
Q Consensus 152 ~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 231 (355)
+...|..++..|+|++|+..|+++++.+|++..++..+|.++...|++++|+..+++++.++|++..+++.+|.++
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~---- 80 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTAC---- 80 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHH----
Confidence 4456777788888888888888888888888888888888888888888888888888888887777666655555
Q ss_pred chHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc
Q 040440 232 KKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLL 305 (355)
Q Consensus 232 ~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~ 305 (355)
..+|++++|+..|++++.++|++..+...++.+..++
T Consensus 81 -------------------------------------~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 81 -------------------------------------MKLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred -------------------------------------HHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 4556677777777777777777777777766665544
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.4e-10 Score=90.79 Aligned_cols=119 Identities=13% Similarity=0.169 Sum_probs=95.5
Q ss_pred CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCc---hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 040440 146 PNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNE---FEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHG 222 (355)
Q Consensus 146 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 222 (355)
+....+++.+|..+...|++++|+.+|++++...++. ..++..+|.++...|++++|+..+++++...|++...+..
T Consensus 32 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 111 (172)
T PRK02603 32 AKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNN 111 (172)
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHH
Confidence 3467788999999999999999999999999886653 4689999999999999999999999999999999999999
Q ss_pred HHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Q 040440 223 LVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRD 291 (355)
Q Consensus 223 l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~ 291 (355)
+|.++...|+ ...+.+.+++|+ +.+++|++++++++..+|++
T Consensus 112 lg~~~~~~g~-~~~a~~~~~~A~--------------------------~~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 112 IAVIYHKRGE-KAEEAGDQDEAE--------------------------ALFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHHHHHcCC-hHhHhhCHHHHH--------------------------HHHHHHHHHHHHHHhhCchh
Confidence 9999988887 222222222222 23566777777777776655
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.4e-10 Score=90.48 Aligned_cols=103 Identities=11% Similarity=0.084 Sum_probs=86.5
Q ss_pred CHHHHHHHHHHHHHcCCCC--HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCc---hHHHHHHHHHHHHcCCHHHHHH
Q 040440 130 SYEEKEKEIEQHLAANPND--IEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNE---FEWQLLKAQVQSYAGESEAAIK 204 (355)
Q Consensus 130 ~~~~A~~~~~~~l~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~la~~~~~~g~~~~A~~ 204 (355)
.+..+...+...++..+.+ ...+..+|.++...|++++|+..|++++.+.++. ..++..+|.++...|++++|+.
T Consensus 14 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~ 93 (168)
T CHL00033 14 TFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALE 93 (168)
T ss_pred ccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHH
Confidence 4556666666665555554 6678999999999999999999999999886653 3589999999999999999999
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHhccCc
Q 040440 205 GFEEILRKDPLRVEAYHGLVMAYDGSDK 232 (355)
Q Consensus 205 ~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 232 (355)
.+++++.+.|.....+..++.++...|+
T Consensus 94 ~~~~Al~~~~~~~~~~~~la~i~~~~~~ 121 (168)
T CHL00033 94 YYFQALERNPFLPQALNNMAVICHYRGE 121 (168)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHhhH
Confidence 9999999999999999999888875543
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.4e-10 Score=93.59 Aligned_cols=184 Identities=13% Similarity=0.070 Sum_probs=151.1
Q ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHH
Q 040440 129 VSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEE 208 (355)
Q Consensus 129 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 208 (355)
.+|++|++++..-.+.+|.+...+..+|.+|+...+|..|.++|++.-...|......+..++.+++.+.+.+|+.....
T Consensus 24 ~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~ 103 (459)
T KOG4340|consen 24 ARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAFL 103 (459)
T ss_pred hhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 48999999999999999999999999999999999999999999999999999988989999999999999999998877
Q ss_pred HHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q 040440 209 ILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEE 288 (355)
Q Consensus 209 ~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 288 (355)
+.....-.......-+.+....++ +-.+..+.++.. ...+.......|-+.++.|+++.|++-|+.+++..
T Consensus 104 ~~D~~~L~~~~lqLqaAIkYse~D--------l~g~rsLveQlp-~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvs 174 (459)
T KOG4340|consen 104 LLDNPALHSRVLQLQAAIKYSEGD--------LPGSRSLVEQLP-SENEADGQINLGCLLYKEGQYEAAVQKFQAALQVS 174 (459)
T ss_pred hcCCHHHHHHHHHHHHHHhccccc--------CcchHHHHHhcc-CCCccchhccchheeeccccHHHHHHHHHHHHhhc
Confidence 654311122223333444444555 445555554422 12456778888999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 040440 289 PRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRL 321 (355)
Q Consensus 289 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 321 (355)
.-++..-++++.++++.|++..|+++..+.++.
T Consensus 175 GyqpllAYniALaHy~~~qyasALk~iSEIieR 207 (459)
T KOG4340|consen 175 GYQPLLAYNLALAHYSSRQYASALKHISEIIER 207 (459)
T ss_pred CCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 888999999999999999999999998887764
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.7e-11 Score=79.27 Aligned_cols=68 Identities=29% Similarity=0.407 Sum_probs=64.8
Q ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCC
Q 040440 147 NDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAG-ESEAAIKGFEEILRKDP 214 (355)
Q Consensus 147 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~~~~~~p 214 (355)
+++..|..+|.++...|++++|+..|+++++.+|++..+++.+|.++...| ++++|++.++++++++|
T Consensus 1 e~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 1 ENAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp TSHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 367889999999999999999999999999999999999999999999999 79999999999999887
|
... |
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.28 E-value=8.2e-11 Score=108.61 Aligned_cols=205 Identities=16% Similarity=0.120 Sum_probs=172.0
Q ss_pred ccccccccccchhhhhhhhhhhccC-CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCc-
Q 040440 105 PVAAAATVESTNESTKDTTSAREDV-SYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNE- 182 (355)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~- 182 (355)
++..++...+++.-++.. |..- |...|.++|+++++.|+.+.+++...+..|....+++.|....-.+-+..|..
T Consensus 484 alrld~~~apaf~~LG~i---Yrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~ 560 (1238)
T KOG1127|consen 484 ALRLDVSLAPAFAFLGQI---YRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFA 560 (1238)
T ss_pred HHhcccchhHHHHHHHHH---HHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHH
Confidence 566777888888888777 6666 88999999999999999999999999999999999999999977776666533
Q ss_pred -hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hccCCchHHH
Q 040440 183 -FEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDF 260 (355)
Q Consensus 183 -~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~ 260 (355)
...|..+|-.|...++..+|+..|+.+++.+|.+...|..+|.+|...|+ +..|++.+.+ ....|.+...
T Consensus 561 ~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGr--------y~~AlKvF~kAs~LrP~s~y~ 632 (1238)
T KOG1127|consen 561 CKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGR--------YSHALKVFTKASLLRPLSKYG 632 (1238)
T ss_pred HHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCc--------eehHHHhhhhhHhcCcHhHHH
Confidence 23577799999999999999999999999999999999999999999999 7778887777 4557888888
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-------hHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 040440 261 KLLIAQIKVMESKHSEALRVYEELVKEEPRD-------FRPYLCQGIIYTLLRKKDEAEKQFEKFRR 320 (355)
Q Consensus 261 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 320 (355)
.+..+.+....|+|.+|+..+...+...... ...+..++..+...|-..+|..++++.++
T Consensus 633 ~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie 699 (1238)
T KOG1127|consen 633 RFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIE 699 (1238)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 9999999999999999999999988765433 34555556666666767777777777655
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.28 E-value=8e-10 Score=90.18 Aligned_cols=113 Identities=20% Similarity=0.174 Sum_probs=104.7
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcC---CHHHHHHHH
Q 040440 130 SYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAG---ESEAAIKGF 206 (355)
Q Consensus 130 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~ 206 (355)
+.++.+..++..+..+|+|++.|..||.+|...|+++.|...|.+++++.|++++.+..+|.+++.+. ...++...+
T Consensus 137 ~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll 216 (287)
T COG4235 137 EMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALL 216 (287)
T ss_pred cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 46667889999999999999999999999999999999999999999999999999999998887765 467899999
Q ss_pred HHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh
Q 040440 207 EEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK 250 (355)
Q Consensus 207 ~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~ 250 (355)
++++..+|.+..+.+.++..++..|+ |.+|+..++.
T Consensus 217 ~~al~~D~~~iral~lLA~~afe~g~--------~~~A~~~Wq~ 252 (287)
T COG4235 217 RQALALDPANIRALSLLAFAAFEQGD--------YAEAAAAWQM 252 (287)
T ss_pred HHHHhcCCccHHHHHHHHHHHHHccc--------HHHHHHHHHH
Confidence 99999999999999999999999999 8888888777
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.7e-11 Score=79.26 Aligned_cols=67 Identities=25% Similarity=0.378 Sum_probs=64.3
Q ss_pred hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCC
Q 040440 257 LRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLR-KKDEAEKQFEKFRRLVP 323 (355)
Q Consensus 257 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~l~~~p 323 (355)
+...+..+|.++...|++++|+..|+++++.+|++..+|+++|.++..+| ++++|++.++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 46788999999999999999999999999999999999999999999999 79999999999999988
|
... |
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.8e-10 Score=103.38 Aligned_cols=176 Identities=14% Similarity=0.096 Sum_probs=136.5
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHH-------------------
Q 040440 130 SYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKA------------------- 190 (355)
Q Consensus 130 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la------------------- 190 (355)
-...|+.++++. ..|-....+|...|+..+|..+..+-++ .|+++.+|..+|
T Consensus 413 itksAl~I~Erl--------emw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv~~d~s~yEkawElsn~~ 483 (777)
T KOG1128|consen 413 ITKSALVIFERL--------EMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDVLHDPSLYEKAWELSNYI 483 (777)
T ss_pred hHHHHHHHHHhH--------HHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhhccChHHHHHHHHHhhhh
Confidence 556666666653 4566667777777777777777777666 333444433333
Q ss_pred ---------HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hccCCchHHH
Q 040440 191 ---------QVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDF 260 (355)
Q Consensus 191 ---------~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~ 260 (355)
......++|.++.+.++..++++|-....|+.+|.+..+.++ ++.|.+.|.. ....|++...
T Consensus 484 sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek--------~q~av~aF~rcvtL~Pd~~ea 555 (777)
T KOG1128|consen 484 SARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEK--------EQAAVKAFHRCVTLEPDNAEA 555 (777)
T ss_pred hHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhh--------hHHHHHHHHHHhhcCCCchhh
Confidence 333446788889999999999999889999999988888888 7777777777 6678888899
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 040440 261 KLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLV 322 (355)
Q Consensus 261 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 322 (355)
|.+++..|.+.|+..+|...++++++-+-++..+|.+...+..+.|.+++|++.+.+.+.+.
T Consensus 556 WnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 556 WNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred hhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence 99999999999999999999999998887788888888888899999999999998887754
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.25 E-value=7.1e-09 Score=88.97 Aligned_cols=208 Identities=15% Similarity=0.136 Sum_probs=171.8
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 040440 130 SYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEI 209 (355)
Q Consensus 130 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 209 (355)
++..|..++++++..+-.+...|...+.+-++......|..++++++..-|.....|+....+-..+|+...|.++|++-
T Consensus 88 e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqiferW 167 (677)
T KOG1915|consen 88 EIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIFERW 167 (677)
T ss_pred HHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 78899999999999999999999999999999999999999999999999999899999999899999999999999999
Q ss_pred HhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Q 040440 210 LRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEP 289 (355)
Q Consensus 210 ~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~ 289 (355)
+...|+ ..+|......-.+.++ .+.|..++++..........|...+..-.+.|+...|..+|+.+++.-.
T Consensus 168 ~~w~P~-eqaW~sfI~fElRyke--------ieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~ 238 (677)
T KOG1915|consen 168 MEWEPD-EQAWLSFIKFELRYKE--------IERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLG 238 (677)
T ss_pred HcCCCc-HHHHHHHHHHHHHhhH--------HHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhh
Confidence 998885 4567766666666666 8889999998444445677788899999999999999999999998765
Q ss_pred CC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHhccHHh
Q 040440 290 RD---FRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHPYREYFVDNMVATKIFGEKVD 347 (355)
Q Consensus 290 ~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 347 (355)
++ ...+...+..-..++.++.|.-.|+-++..-|.+-. ..++....--.+.|+.+.+
T Consensus 239 ~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~ra-eeL~k~~~~fEKqfGd~~g 298 (677)
T KOG1915|consen 239 DDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRA-EELYKKYTAFEKQFGDKEG 298 (677)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccH-HHHHHHHHHHHHHhcchhh
Confidence 54 345566777777888999999999999999998733 3344444444455554443
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.3e-09 Score=98.92 Aligned_cols=149 Identities=17% Similarity=0.154 Sum_probs=114.1
Q ss_pred CCCchHH--HHHHHHHHHHcCC---HHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh---
Q 040440 179 EPNEFEW--QLLKAQVQSYAGE---SEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK--- 250 (355)
Q Consensus 179 ~~~~~~~--~~~la~~~~~~g~---~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~--- 250 (355)
.|.+..+ ++..|..+...++ ...|+.+|+++++++|++..++-.++.++.........-.....++.+...+
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 4555554 4556666665544 7899999999999999999999888887755422110001123344444433
Q ss_pred hccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhH
Q 040440 251 EKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHPY 328 (355)
Q Consensus 251 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 328 (355)
....+.+..++..+|..+...|++++|...+++++.++| +..+|..+|.++...|+.++|.+.|++++.++|.++++
T Consensus 413 l~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt~ 489 (517)
T PRK10153 413 LPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENTL 489 (517)
T ss_pred cccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchH
Confidence 233566678888899999999999999999999999999 68899999999999999999999999999999998765
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.22 E-value=6.5e-11 Score=76.39 Aligned_cols=64 Identities=23% Similarity=0.327 Sum_probs=59.7
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q 040440 263 LIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNH 326 (355)
Q Consensus 263 ~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~ 326 (355)
.+|..++..|++++|+..|+++++.+|++..+|+.+|.++..+|++++|+.+|+++++.+|+++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 5789999999999999999999999999999999999999999999999999999999999863
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.21 E-value=6.4e-11 Score=99.52 Aligned_cols=196 Identities=13% Similarity=0.015 Sum_probs=143.6
Q ss_pred hccCCHHHHHHHHHHHHHcCCCCH----HHHHHHHHHHHHccCHHHHHHHHHHHHHc----C--CCchHHHHHHHHHHHH
Q 040440 126 REDVSYEEKEKEIEQHLAANPNDI----EALQTLMEVRIKSQKLVEAVDVIDRLIEL----E--PNEFEWQLLKAQVQSY 195 (355)
Q Consensus 126 ~~~~~~~~A~~~~~~~l~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~~~~~----~--~~~~~~~~~la~~~~~ 195 (355)
...+++...+..|+.+++...++. .+|..+|.+|+..++|++|+++-..=+.+ . -.....--++|..+..
T Consensus 28 ck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtlKv 107 (639)
T KOG1130|consen 28 CKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTLKV 107 (639)
T ss_pred HhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchhhh
Confidence 455689999999999999888764 35778999999999999999986554332 1 1222345678999999
Q ss_pred cCCHHHHHHHHHHHHhhCC------CCHHHHHHHHHHHhccCch------------HHHHHHHHHHHHHHHH-------h
Q 040440 196 AGESEAAIKGFEEILRKDP------LRVEAYHGLVMAYDGSDKK------------LNEVEKRIEKAMERCK-------K 250 (355)
Q Consensus 196 ~g~~~~A~~~~~~~~~~~p------~~~~~~~~l~~~~~~~~~~------------~~~a~~~~~~Al~~~~-------~ 250 (355)
.|.|++|+.+..+-+.+.. ....++|++|.+|...|+. -+++...++.|.++|. +
T Consensus 108 ~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~ 187 (639)
T KOG1130|consen 108 KGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEK 187 (639)
T ss_pred hcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999888776532 2356799999999887764 1233344444444444 4
Q ss_pred hccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 040440 251 EKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPR------DFRPYLCQGIIYTLLRKKDEAEKQFEKFRRL 321 (355)
Q Consensus 251 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 321 (355)
..........+-++|..|+.+|+|++|+..-+.-+.+... ...++.++|.++.-+|+++.|.++|+..+.+
T Consensus 188 lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~L 264 (639)
T KOG1130|consen 188 LGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNL 264 (639)
T ss_pred hhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHH
Confidence 3333334455777888899999999999888776654332 2457888999999999999999999987654
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.1e-10 Score=75.28 Aligned_cols=65 Identities=18% Similarity=0.247 Sum_probs=58.6
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 040440 153 QTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRV 217 (355)
Q Consensus 153 ~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~ 217 (355)
+.+|..++..|++++|+..|+++++.+|++..+++.+|.++...|++++|+..|+++++.+|+++
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 35788999999999999999999999999999999999999999999999999999999999874
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.20 E-value=4.9e-09 Score=100.29 Aligned_cols=214 Identities=12% Similarity=0.129 Sum_probs=166.1
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHc-CCCc------------------------------
Q 040440 134 KEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIEL-EPNE------------------------------ 182 (355)
Q Consensus 134 A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~~~~------------------------------ 182 (355)
..+.|++.+.-+|+....|......+++.++.++|.+.+++++.. ++..
T Consensus 1443 saeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeR 1522 (1710)
T KOG1070|consen 1443 SAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFER 1522 (1710)
T ss_pred CHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHH
Confidence 456677777778888888888777788888888888888887654 1111
Q ss_pred -------hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCC
Q 040440 183 -------FEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKS 255 (355)
Q Consensus 183 -------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~ 255 (355)
...+..|..+|...+.+++|.++++.+++...+...+|..++..+++.++ .+++...+++|+..+.+ .
T Consensus 1523 Acqycd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne-~~aa~~lL~rAL~~lPk----~ 1597 (1710)
T KOG1070|consen 1523 ACQYCDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNE-AEAARELLKRALKSLPK----Q 1597 (1710)
T ss_pred HHHhcchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccH-HHHHHHHHHHHHhhcch----h
Confidence 01244456677888899999999999999988889999999999999887 66777777777777544 3
Q ss_pred chHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHH
Q 040440 256 DLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHPYREYFVDN 335 (355)
Q Consensus 256 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~ 335 (355)
....+....|++.++.|+.+.+...|+..+..+|...+.|..+...-.++|+.+.++.+|++++.+.=.-...+.+|...
T Consensus 1598 eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkw 1677 (1710)
T KOG1070|consen 1598 EHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKW 1677 (1710)
T ss_pred hhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHH
Confidence 46777788899999999999999999999999999999999999999999999999999999998764334466666666
Q ss_pred HHHHHHhccHHhhhhhh
Q 040440 336 MVATKIFGEKVDRESMA 352 (355)
Q Consensus 336 ~~~~~~~~~~~~~~~~~ 352 (355)
+-..+-.+..+..|...
T Consensus 1678 LeyEk~~Gde~~vE~VK 1694 (1710)
T KOG1070|consen 1678 LEYEKSHGDEKNVEYVK 1694 (1710)
T ss_pred HHHHHhcCchhhHHHHH
Confidence 55555544444444433
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=99.20 E-value=6.4e-11 Score=80.70 Aligned_cols=80 Identities=26% Similarity=0.388 Sum_probs=69.4
Q ss_pred CCHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHH
Q 040440 129 VSYEEKEKEIEQHLAANPN--DIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGF 206 (355)
Q Consensus 129 ~~~~~A~~~~~~~l~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 206 (355)
+++++|+..++++++.+|. +...++.+|.+|++.|++++|+.++++ ...++.+....+.+|.++..+|++++|++.|
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l 81 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKAL 81 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 5889999999999999885 466788899999999999999999999 7777888888888899999999999999999
Q ss_pred HHH
Q 040440 207 EEI 209 (355)
Q Consensus 207 ~~~ 209 (355)
+++
T Consensus 82 ~~~ 84 (84)
T PF12895_consen 82 EKA 84 (84)
T ss_dssp HHH
T ss_pred hcC
Confidence 875
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.5e-08 Score=81.11 Aligned_cols=178 Identities=18% Similarity=0.145 Sum_probs=130.7
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCch---HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH---HHH
Q 040440 148 DIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEF---EWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVE---AYH 221 (355)
Q Consensus 148 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~---~~~ 221 (355)
.+..|+..|...++.|+|++|+..|+.+....|..+ .+...++.++++.+++++|+...++.+.++|.++. +++
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Y 112 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYY 112 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHH
Confidence 356688888889999999999999999998877554 57888999999999999999999999999887654 466
Q ss_pred HHHHHHhccCchHHHHHHHHHHHHHHHHh-hccCCchH-----------------HHHHHHHHHHHHccCHHHHHHHHHH
Q 040440 222 GLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLR-----------------DFKLLIAQIKVMESKHSEALRVYEE 283 (355)
Q Consensus 222 ~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~-----------------~~~~~la~~~~~~g~~~~A~~~~~~ 283 (355)
..|.++...-++...-.....+|+.-++. +...|+.. ..-..+|+.|.+.|.+..|+..+++
T Consensus 113 lkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~ 192 (254)
T COG4105 113 LKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEE 192 (254)
T ss_pred HHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHH
Confidence 66777655443332223333444444444 22222221 1234578999999999999999999
Q ss_pred HHHhCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 040440 284 LVKEEPRD---FRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRN 325 (355)
Q Consensus 284 ~l~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~ 325 (355)
+++..|+. ..++..+..+|..+|-.++|...-+-.-.-.|+.
T Consensus 193 v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s 237 (254)
T COG4105 193 VLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDS 237 (254)
T ss_pred HHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCC
Confidence 99987754 4678888999999999999988755444444554
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.1e-09 Score=98.51 Aligned_cols=172 Identities=14% Similarity=0.066 Sum_probs=138.0
Q ss_pred cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 040440 144 ANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGL 223 (355)
Q Consensus 144 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 223 (355)
.-|........++..+...|-...|+..|++. ..|-....||...|+..+|..+..+-++ .|.++..|..+
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erl--------emw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~L 463 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERL--------EMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLL 463 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhH--------HHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHh
Confidence 34555666778999999999999999999975 4667788899999999999999988888 66677777777
Q ss_pred HHHHhccCchHHHH---------------------HHHHHHHHHHHHh-hccCCchHHHHHHHHHHHHHccCHHHHHHHH
Q 040440 224 VMAYDGSDKKLNEV---------------------EKRIEKAMERCKK-EKKKSDLRDFKLLIAQIKVMESKHSEALRVY 281 (355)
Q Consensus 224 ~~~~~~~~~~~~~a---------------------~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 281 (355)
|.+.....- ++.+ .+.|.++.+.++. ....+-....|+.+|.+..+.++++.|.+.|
T Consensus 464 GDv~~d~s~-yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF 542 (777)
T KOG1128|consen 464 GDVLHDPSL-YEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAF 542 (777)
T ss_pred hhhccChHH-HHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHH
Confidence 777544322 2221 2457777777777 6667778888888999999999999999999
Q ss_pred HHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 040440 282 EELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRN 325 (355)
Q Consensus 282 ~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~ 325 (355)
..++..+|++..+|++++..|.++|+..+|...++++++-+-++
T Consensus 543 ~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~ 586 (777)
T KOG1128|consen 543 HRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQH 586 (777)
T ss_pred HHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCC
Confidence 99999999999999999999999999999999999988877544
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=4.3e-09 Score=86.58 Aligned_cols=164 Identities=13% Similarity=0.054 Sum_probs=113.0
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHH---HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH---HHHH
Q 040440 148 DIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEW---QLLKAQVQSYAGESEAAIKGFEEILRKDPLRV---EAYH 221 (355)
Q Consensus 148 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~ 221 (355)
++..++..|..+...|+|++|++.|++++...|....+ .+.+|.++.+.+++++|+..+++.++.+|+++ .+++
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y 110 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLY 110 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHH
Confidence 45667788889999999999999999999999987654 58999999999999999999999999998764 4577
Q ss_pred HHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCh---------
Q 040440 222 GLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDF--------- 292 (355)
Q Consensus 222 ~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~--------- 292 (355)
.+|.++...++. .+... ..+-..........+|+..|++.++..|+..
T Consensus 111 ~~g~~~~~~~~~-------------~~~~~----------~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl 167 (243)
T PRK10866 111 MRGLTNMALDDS-------------ALQGF----------FGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRL 167 (243)
T ss_pred HHHHhhhhcchh-------------hhhhc----------cCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHH
Confidence 777765444320 00000 0000000001112334444444444444321
Q ss_pred --------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHH
Q 040440 293 --------RPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHPYREYFVD 334 (355)
Q Consensus 293 --------~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~ 334 (355)
.--+..|..|.+.|.|..|+.-++.+++..|+.......+..
T Consensus 168 ~~l~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~ 217 (243)
T PRK10866 168 VFLKDRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPL 217 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHH
Confidence 123467889999999999999999999999987554444333
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.4e-08 Score=90.36 Aligned_cols=129 Identities=16% Similarity=0.112 Sum_probs=103.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hccCCchHHHHHH
Q 040440 185 WQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLL 263 (355)
Q Consensus 185 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~ 263 (355)
+++.+++.|...|++++|+++++++++..|..++.+...|.++...|+ +.+|.+.++. ...+..+..+...
T Consensus 196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~--------~~~Aa~~~~~Ar~LD~~DRyiNsK 267 (517)
T PF12569_consen 196 TLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGD--------LKEAAEAMDEARELDLADRYINSK 267 (517)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHhCChhhHHHHHH
Confidence 456778888899999999999999999999999999999999999998 6667666666 4457777778888
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHhCC--C-C------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 040440 264 IAQIKVMESKHSEALRVYEELVKEEP--R-D------FRPYLCQGIIYTLLRKKDEAEKQFEKFRRL 321 (355)
Q Consensus 264 la~~~~~~g~~~~A~~~~~~~l~~~~--~-~------~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 321 (355)
.+..+.+.|+.++|.+.+......+- . + .+.....|.+|.+.|++..|++.|..+.+.
T Consensus 268 ~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~ 334 (517)
T PF12569_consen 268 CAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKH 334 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 88888899999999988877655431 1 1 234456789999999999999999888764
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.1e-10 Score=96.48 Aligned_cols=192 Identities=14% Similarity=-0.006 Sum_probs=153.3
Q ss_pred CCHHHHHHHHHHHHHcCC------CCHHHHHHHHHHHHHccC--------------------HHHHHHHHHHHHHcCCCc
Q 040440 129 VSYEEKEKEIEQHLAANP------NDIEALQTLMEVRIKSQK--------------------LVEAVDVIDRLIELEPNE 182 (355)
Q Consensus 129 ~~~~~A~~~~~~~l~~~p------~~~~~~~~la~~~~~~g~--------------------~~~A~~~~~~~~~~~~~~ 182 (355)
+.|++|+.++.+-+.... ....+++++|.+|...|+ ++.|.++|..-+++....
T Consensus 109 G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~l 188 (639)
T KOG1130|consen 109 GAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKL 188 (639)
T ss_pred cccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 389999999888775432 246789999999997764 455677777666553222
Q ss_pred ------hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh
Q 040440 183 ------FEWQLLKAQVQSYAGESEAAIKGFEEILRKDPL------RVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK 250 (355)
Q Consensus 183 ------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~------~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~ 250 (355)
..++-++|..|+-+|+|+.|+..-+.-+.+... ...++.++|.++.-.|+ ++.|.++|+.++.+..+
T Consensus 189 gDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~-fe~A~ehYK~tl~LAie 267 (639)
T KOG1130|consen 189 GDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGN-FELAIEHYKLTLNLAIE 267 (639)
T ss_pred hhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcc-cHhHHHHHHHHHHHHHH
Confidence 235777888999999999999998887776432 23567899999999998 88888888888888888
Q ss_pred hccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 040440 251 EKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEP------RDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRL 321 (355)
Q Consensus 251 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 321 (355)
+..........+.+|..|....++++|+.++++-+.+.. ....+++.+|..+...|..++|+.+.++.+++
T Consensus 268 lg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 268 LGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRS 344 (639)
T ss_pred hcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 777777888899999999999999999999998876532 34678889999999999999999998887764
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.15 E-value=6.4e-09 Score=80.28 Aligned_cols=180 Identities=19% Similarity=0.147 Sum_probs=125.2
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 040440 131 YEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEIL 210 (355)
Q Consensus 131 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 210 (355)
+.-|.-.|.+++.+.|..+++++.+|..+...|+|+.|.+.|+..++++|....+..+.|..++.-|++.-|.+.+.+..
T Consensus 81 ~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fY 160 (297)
T COG4785 81 RALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFY 160 (297)
T ss_pred HHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHH
Confidence 45566777888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Q 040440 211 RKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEP 289 (355)
Q Consensus 211 ~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~ 289 (355)
+.+|+++---..+-..-.+. + ..+|..-+.+ ..........+ .+...|. |+..+ ...++++.....
T Consensus 161 Q~D~~DPfR~LWLYl~E~k~-d--------P~~A~tnL~qR~~~~d~e~WG~-~iV~~yL--gkiS~-e~l~~~~~a~a~ 227 (297)
T COG4785 161 QDDPNDPFRSLWLYLNEQKL-D--------PKQAKTNLKQRAEKSDKEQWGW-NIVEFYL--GKISE-ETLMERLKADAT 227 (297)
T ss_pred hcCCCChHHHHHHHHHHhhC-C--------HHHHHHHHHHHHHhccHhhhhH-HHHHHHH--hhccH-HHHHHHHHhhcc
Confidence 99999875433333322222 2 3344333332 11111111112 2222222 22211 112233322222
Q ss_pred CC-------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 040440 290 RD-------FRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVP 323 (355)
Q Consensus 290 ~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p 323 (355)
++ .++++.+|.-+...|+.++|...|+-++..+-
T Consensus 228 ~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannV 268 (297)
T COG4785 228 DNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANNV 268 (297)
T ss_pred chHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhH
Confidence 22 46789999999999999999999998887543
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.14 E-value=2e-08 Score=86.32 Aligned_cols=184 Identities=11% Similarity=0.102 Sum_probs=164.2
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 040440 135 EKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDP 214 (355)
Q Consensus 135 ~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p 214 (355)
.+.|+..+..+--+...|...|.--..++++..|..+|++++..+..+...|...+.+-++......|..++++++.+-|
T Consensus 59 RkefEd~irrnR~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lP 138 (677)
T KOG1915|consen 59 RKEFEDQIRRNRLNMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILP 138 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcc
Confidence 34566666667677888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHH
Q 040440 215 LRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRP 294 (355)
Q Consensus 215 ~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~ 294 (355)
.-...|+....+-...|+ ..-|.+++++-.....+..+|......-.+.++.+.|..+|++.+-.+| +...
T Consensus 139 RVdqlWyKY~ymEE~LgN--------i~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP-~v~~ 209 (677)
T KOG1915|consen 139 RVDQLWYKYIYMEEMLGN--------IAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHP-KVSN 209 (677)
T ss_pred hHHHHHHHHHHHHHHhcc--------cHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecc-cHHH
Confidence 988999888877777777 8888889988666666788889999999999999999999999998888 7889
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChh
Q 040440 295 YLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHP 327 (355)
Q Consensus 295 ~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 327 (355)
|...+..-.+.|+..-|..+|+.+++...++..
T Consensus 210 wikyarFE~k~g~~~~aR~VyerAie~~~~d~~ 242 (677)
T KOG1915|consen 210 WIKYARFEEKHGNVALARSVYERAIEFLGDDEE 242 (677)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHH
Confidence 999999999999999999999999998776533
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.1e-09 Score=78.65 Aligned_cols=104 Identities=16% Similarity=0.210 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hccCCc---hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-
Q 040440 217 VEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSD---LRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRD- 291 (355)
Q Consensus 217 ~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~- 291 (355)
++.++.+|..+...|+ +++|++.+.. ....++ ....++.+|.++...|++++|+..|++++..+|++
T Consensus 2 ~~~~~~~~~~~~~~~~--------~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 73 (119)
T TIGR02795 2 EEAYYDAALLVLKAGD--------YADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSP 73 (119)
T ss_pred cHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCC
Confidence 3567889999999999 7777777766 233333 35688999999999999999999999999998875
Q ss_pred --hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhH
Q 040440 292 --FRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHPY 328 (355)
Q Consensus 292 --~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 328 (355)
..+++.+|.++...|++++|..+++++++..|++...
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 112 (119)
T TIGR02795 74 KAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSSAA 112 (119)
T ss_pred cccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCChhH
Confidence 6789999999999999999999999999999987443
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.9e-09 Score=78.86 Aligned_cols=89 Identities=16% Similarity=0.174 Sum_probs=43.6
Q ss_pred CHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCc---hHHHHHHHHHHHHcCCHHHHH
Q 040440 130 SYEEKEKEIEQHLAANPND---IEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNE---FEWQLLKAQVQSYAGESEAAI 203 (355)
Q Consensus 130 ~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~la~~~~~~g~~~~A~ 203 (355)
++++|++.|++++..+|++ ..+++.+|.++...|++++|+..|++++..+|++ ..++..+|.++...|++++|+
T Consensus 17 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~ 96 (119)
T TIGR02795 17 DYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGDKEKAK 96 (119)
T ss_pred CHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCChHHHH
Confidence 5555555555555544443 3344445555555555555555555555444432 234444555555555555555
Q ss_pred HHHHHHHhhCCCCHH
Q 040440 204 KGFEEILRKDPLRVE 218 (355)
Q Consensus 204 ~~~~~~~~~~p~~~~ 218 (355)
..++++++..|++..
T Consensus 97 ~~~~~~~~~~p~~~~ 111 (119)
T TIGR02795 97 ATLQQVIKRYPGSSA 111 (119)
T ss_pred HHHHHHHHHCcCChh
Confidence 555555555554433
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=99.14 E-value=4.4e-09 Score=82.04 Aligned_cols=126 Identities=16% Similarity=0.170 Sum_probs=85.8
Q ss_pred cCHHHHHHHHHHHHHcCCCc--hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHH
Q 040440 163 QKLVEAVDVIDRLIELEPNE--FEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKR 240 (355)
Q Consensus 163 g~~~~A~~~~~~~~~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~ 240 (355)
+++..+...+.+.++..+.+ ...++.+|.++...|++++|+..|++++.+.++...
T Consensus 13 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~---------------------- 70 (168)
T CHL00033 13 KTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYD---------------------- 70 (168)
T ss_pred cccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchh----------------------
Confidence 34555555565554444433 345677788888888888888888888776543211
Q ss_pred HHHHHHHHHhhccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH-------HcCCHH----
Q 040440 241 IEKAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYT-------LLRKKD---- 309 (355)
Q Consensus 241 ~~~Al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~-------~~g~~~---- 309 (355)
...++..+|.+|...|++++|+..|++++..+|.....+..+|.++. ..|+++
T Consensus 71 ----------------~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~ 134 (168)
T CHL00033 71 ----------------RSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEA 134 (168)
T ss_pred ----------------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHH
Confidence 12345566777777788888888888888888877777777777777 667766
Q ss_pred ---HHHHHHHHHHHhCCCCh
Q 040440 310 ---EAEKQFEKFRRLVPRNH 326 (355)
Q Consensus 310 ---~A~~~~~~~l~~~p~~~ 326 (355)
+|..++++++..+|++.
T Consensus 135 ~~~~a~~~~~~a~~~~p~~~ 154 (168)
T CHL00033 135 WFDQAAEYWKQAIALAPGNY 154 (168)
T ss_pred HHHHHHHHHHHHHHhCcccH
Confidence 55666666777888663
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.3e-08 Score=89.57 Aligned_cols=160 Identities=19% Similarity=0.143 Sum_probs=126.3
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhc
Q 040440 150 EALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDG 229 (355)
Q Consensus 150 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 229 (355)
..++.-...+...|+|++|+....+++...|++..+......+..+.++|++|++..+.-....-.+ ...+..+.|.++
T Consensus 13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~-~~~fEKAYc~Yr 91 (652)
T KOG2376|consen 13 EALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVIN-SFFFEKAYCEYR 91 (652)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcc-hhhHHHHHHHHH
Confidence 3444445567789999999999999999999999999999999999999999985554433222112 222677889999
Q ss_pred cCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-------------------
Q 040440 230 SDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPR------------------- 290 (355)
Q Consensus 230 ~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~------------------- 290 (355)
.+. .++|+..++. .++.+..+....|++++++|+|++|+.+|+.+++.+.+
T Consensus 92 lnk--------~Dealk~~~~--~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~ 161 (652)
T KOG2376|consen 92 LNK--------LDEALKTLKG--LDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQV 161 (652)
T ss_pred ccc--------HHHHHHHHhc--ccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhH
Confidence 998 8888888874 33444667788899999999999999999988643321
Q ss_pred ------------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 040440 291 ------------DFRPYLCQGIIYTLLRKKDEAEKQFEKFRR 320 (355)
Q Consensus 291 ------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 320 (355)
+.+.+++.+.++...|+|.+|++.++++++
T Consensus 162 ~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~ 203 (652)
T KOG2376|consen 162 QLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALR 203 (652)
T ss_pred HHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 345678999999999999999999999943
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=99.11 E-value=9.3e-09 Score=77.98 Aligned_cols=116 Identities=22% Similarity=0.184 Sum_probs=95.4
Q ss_pred HcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhh-ccCCch---HHHHHHHHHH
Q 040440 195 YAGESEAAIKGFEEILRKDPLR---VEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKE-KKKSDL---RDFKLLIAQI 267 (355)
Q Consensus 195 ~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~-~~~~~~---~~~~~~la~~ 267 (355)
..++...+...+++++..+|+. ..+.+.++.++...|+ +++|+..++.. ...++. ..+.+.++.+
T Consensus 23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~--------~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~ 94 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGD--------YDEAKAALEKALANAPDPELKPLARLRLARI 94 (145)
T ss_pred HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHhhCCCHHHHHHHHHHHHHH
Confidence 6889999999999999999988 4567789999999999 88888888773 222222 3468889999
Q ss_pred HHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 040440 268 KVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFR 319 (355)
Q Consensus 268 ~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 319 (355)
+...|++++|+..++.. ...+..+.++..+|.++...|++++|+..|++++
T Consensus 95 ~~~~~~~d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 95 LLQQGQYDEALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHcCCHHHHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 99999999999999773 3344456788899999999999999999999874
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=9.9e-09 Score=85.00 Aligned_cols=57 Identities=16% Similarity=0.253 Sum_probs=26.5
Q ss_pred HHccCHHHHHHHHHHHHHhCCC---ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 040440 269 VMESKHSEALRVYEELVKEEPR---DFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRN 325 (355)
Q Consensus 269 ~~~g~~~~A~~~~~~~l~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~ 325 (355)
+..|++++|+..|+++++.+|+ .+++++.+|.++..+|++++|...|+++++..|+.
T Consensus 191 ~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s 250 (263)
T PRK10803 191 YNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGT 250 (263)
T ss_pred HHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 3344444444444444444443 23444444444444555555555555555444443
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=99.08 E-value=8.6e-10 Score=75.10 Aligned_cols=69 Identities=23% Similarity=0.247 Sum_probs=27.6
Q ss_pred cCHHHHHHHHHHHHHcCCC--chHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCc
Q 040440 163 QKLVEAVDVIDRLIELEPN--EFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDK 232 (355)
Q Consensus 163 g~~~~A~~~~~~~~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 232 (355)
|+++.|+.+++++++.+|. +...++.+|.+++..|+|++|+.++++ .+.++.+....+.+|.++...|+
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~ 73 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGK 73 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCC
Confidence 4444444444444444442 222333344444444444444444444 33333333333333333333333
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.08 E-value=5.4e-09 Score=88.44 Aligned_cols=125 Identities=19% Similarity=0.170 Sum_probs=94.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHH
Q 040440 185 WQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLI 264 (355)
Q Consensus 185 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~l 264 (355)
.....|..|++.|+|..|...|++++..-..... -+ .++ -+++.+ ....++.++
T Consensus 210 ~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~------------~~-~ee----~~~~~~---------~k~~~~lNl 263 (397)
T KOG0543|consen 210 RKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRS------------FD-EEE----QKKAEA---------LKLACHLNL 263 (397)
T ss_pred HHHHhhhHHHhhchHHHHHHHHHHHHHHhhcccc------------CC-HHH----HHHHHH---------HHHHHhhHH
Confidence 4556677888888888888888887765321100 00 000 111111 124568899
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHH
Q 040440 265 AQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHPYREYFVDN 335 (355)
Q Consensus 265 a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~ 335 (355)
+.+|.++++|.+|+..++++|..+|+|..+++..|.++..+|+++.|+..|+++++++|+|...+.-+...
T Consensus 264 A~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l 334 (397)
T KOG0543|consen 264 AACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKL 334 (397)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999997665544433
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=99.06 E-value=3.4e-09 Score=73.76 Aligned_cols=98 Identities=28% Similarity=0.292 Sum_probs=86.6
Q ss_pred HHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHH
Q 040440 219 AYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLC 297 (355)
Q Consensus 219 ~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~ 297 (355)
+++.+|.++...|+ +++|+..+++ ....+....++..+|.++...|++++|+..+++++...|.+...+..
T Consensus 2 ~~~~~a~~~~~~~~--------~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 73 (100)
T cd00189 2 ALLNLGNLYYKLGD--------YDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYN 73 (100)
T ss_pred HHHHHHHHHHHHhc--------HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHH
Confidence 46778888888888 7888888777 45566667889999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 040440 298 QGIIYTLLRKKDEAEKQFEKFRRLVPR 324 (355)
Q Consensus 298 l~~~~~~~g~~~~A~~~~~~~l~~~p~ 324 (355)
+|.++...|++++|..+++++++..|+
T Consensus 74 ~~~~~~~~~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 74 LGLAYYKLGKYEEALEAYEKALELDPN 100 (100)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHccCCC
Confidence 999999999999999999999988763
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=99.06 E-value=4e-09 Score=73.40 Aligned_cols=82 Identities=28% Similarity=0.337 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhcc
Q 040440 151 ALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGS 230 (355)
Q Consensus 151 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 230 (355)
+++.+|.++...|++++|+..++++++..|.+..++..+|.++...|++++|++.+++++...|.+...+..++.++...
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 35666777777777777777777777777766667777777777777777777777777777777766777777777666
Q ss_pred Cc
Q 040440 231 DK 232 (355)
Q Consensus 231 ~~ 232 (355)
|+
T Consensus 82 ~~ 83 (100)
T cd00189 82 GK 83 (100)
T ss_pred Hh
Confidence 66
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=6.2e-09 Score=86.21 Aligned_cols=93 Identities=12% Similarity=0.118 Sum_probs=84.1
Q ss_pred cCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC---chHHHHHHHHHHHHcCCHHH
Q 040440 128 DVSYEEKEKEIEQHLAANPND---IEALQTLMEVRIKSQKLVEAVDVIDRLIELEPN---EFEWQLLKAQVQSYAGESEA 201 (355)
Q Consensus 128 ~~~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~la~~~~~~g~~~~ 201 (355)
.++|++|+..|+..++..|++ +.+++.+|.+|+..|++++|+..|++++..+|+ ..++++.+|.++...|++++
T Consensus 156 ~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~ 235 (263)
T PRK10803 156 KSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAK 235 (263)
T ss_pred cCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHHH
Confidence 358999999999999999997 579999999999999999999999999988776 46689999999999999999
Q ss_pred HHHHHHHHHhhCCCCHHHH
Q 040440 202 AIKGFEEILRKDPLRVEAY 220 (355)
Q Consensus 202 A~~~~~~~~~~~p~~~~~~ 220 (355)
|+..|+++++.+|+...+.
T Consensus 236 A~~~~~~vi~~yP~s~~a~ 254 (263)
T PRK10803 236 AKAVYQQVIKKYPGTDGAK 254 (263)
T ss_pred HHHHHHHHHHHCcCCHHHH
Confidence 9999999999999877543
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.06 E-value=2.3e-07 Score=72.67 Aligned_cols=187 Identities=18% Similarity=0.178 Sum_probs=135.7
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHc----CC-C-chHHHHHHHHHHHHcCCHHHHH
Q 040440 130 SYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIEL----EP-N-EFEWQLLKAQVQSYAGESEAAI 203 (355)
Q Consensus 130 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~----~~-~-~~~~~~~la~~~~~~g~~~~A~ 203 (355)
++++|.++|.++ +..|....+|+.|-..|.++.+. +. + -...|...+.+| +.++..+|+
T Consensus 29 k~eeAadl~~~A--------------an~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cy-kk~~~~eAv 93 (288)
T KOG1586|consen 29 KYEEAAELYERA--------------ANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCY-KKVDPEEAV 93 (288)
T ss_pred chHHHHHHHHHH--------------HHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHh-hccChHHHH
Confidence 778888777766 44555666677777777666544 21 1 223455555655 456999999
Q ss_pred HHHHHHHhhCCCCHHH------HHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHccCHHHH
Q 040440 204 KGFEEILRKDPLRVEA------YHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSEA 277 (355)
Q Consensus 204 ~~~~~~~~~~p~~~~~------~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 277 (355)
.++++++++.-+.... +..++.+|...-.+++.++..|+.|-++++...........+...+..-..+++|.+|
T Consensus 94 ~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~A 173 (288)
T KOG1586|consen 94 NCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKA 173 (288)
T ss_pred HHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999986554333 4477888876645588888888888888877555555566677778888899999999
Q ss_pred HHHHHHHHHhCCCCh-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHH
Q 040440 278 LRVYEELVKEEPRDF-------RPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHPYREY 331 (355)
Q Consensus 278 ~~~~~~~l~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~ 331 (355)
+.+|+++....-++. ..++.-|.|+.-.++.-.+...+++..+++|.-.+.+..
T Consensus 174 i~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~dsREc 234 (288)
T KOG1586|consen 174 IDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDSREC 234 (288)
T ss_pred HHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccccHHH
Confidence 999999987655443 234556788888899999999999999999987665554
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.06 E-value=6.9e-08 Score=87.62 Aligned_cols=179 Identities=17% Similarity=0.099 Sum_probs=116.7
Q ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHH
Q 040440 147 NDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKD--PLRVEAYHGLV 224 (355)
Q Consensus 147 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~ 224 (355)
++..+|..+.......|+++.+.+.|++++...-...+.|+.++.+|...|.-..|+.+.++.+... |.+...+...+
T Consensus 321 nd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmas 400 (799)
T KOG4162|consen 321 NDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMAS 400 (799)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHH
Confidence 4666777777777788888888888888876665666777888888888888888888888877776 66666666666
Q ss_pred HHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHc-----------cCHHHHHHHHHHHHHhCCCChH
Q 040440 225 MAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVME-----------SKHSEALRVYEELVKEEPRDFR 293 (355)
Q Consensus 225 ~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~~-----------g~~~~A~~~~~~~l~~~~~~~~ 293 (355)
.++...-+..++++++..+|+..+.. ....-....+..+|.+|..+ ....++++.++++++.+|.|+.
T Consensus 401 klc~e~l~~~eegldYA~kai~~~~~-~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~ 479 (799)
T KOG4162|consen 401 KLCIERLKLVEEGLDYAQKAISLLGG-QRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPL 479 (799)
T ss_pred HHHHhchhhhhhHHHHHHHHHHHhhh-hhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCch
Confidence 55555444466666666666665522 12222233444455554322 2234566666677777777777
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q 040440 294 PYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNH 326 (355)
Q Consensus 294 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~ 326 (355)
+.+.++.-|...++.+.|.++.++++++++.+.
T Consensus 480 ~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~ 512 (799)
T KOG4162|consen 480 VIFYLALQYAEQRQLTSALDYAREALALNRGDS 512 (799)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCcc
Confidence 777777777777777777777777776655443
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=99.05 E-value=8e-09 Score=89.93 Aligned_cols=117 Identities=18% Similarity=0.170 Sum_probs=84.7
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHH
Q 040440 191 QVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQIKV 269 (355)
Q Consensus 191 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~ 269 (355)
..+...++++.|++.++++.+.+|+ +...++.++...++ -.+|++++.+ +...|.+..++...+..+.
T Consensus 177 ~~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~--------E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 177 KYLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNE--------EVEAIRLLNEALKENPQDSELLNLQAEFLL 245 (395)
T ss_pred HHHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCc--------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 3444456666677766666665543 44445666665555 3444554444 3445666677777788888
Q ss_pred HccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 040440 270 MESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKF 318 (355)
Q Consensus 270 ~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 318 (355)
..++++.|+.+.++++...|.+...|+.|+.+|..+|++++|+..+..+
T Consensus 246 ~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred hcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 8899999999999999999999999999999999999999998877654
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=99.04 E-value=1e-07 Score=76.63 Aligned_cols=149 Identities=21% Similarity=0.155 Sum_probs=112.7
Q ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-h---ccC
Q 040440 182 EFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLR---VEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-E---KKK 254 (355)
Q Consensus 182 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~---~~~ 254 (355)
....++..|..++..|+|.+|+..|++++...|.. ..+.+.++.++...|+ +.+|+..+++ . ...
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~--------y~~A~~~~~~fi~~yP~~ 75 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGD--------YEEAIAAYERFIKLYPNS 75 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT---------HHHHHHHHHHHHHH-TT-
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHHCCCC
Confidence 45678899999999999999999999999998764 5678999999999999 7777777777 3 344
Q ss_pred CchHHHHHHHHHHHHHcc-----------CHHHHHHHHHHHHHhCCCChHH-----------------HHHHHHHHHHcC
Q 040440 255 SDLRDFKLLIAQIKVMES-----------KHSEALRVYEELVKEEPRDFRP-----------------YLCQGIIYTLLR 306 (355)
Q Consensus 255 ~~~~~~~~~la~~~~~~g-----------~~~~A~~~~~~~l~~~~~~~~~-----------------~~~l~~~~~~~g 306 (355)
+....+++.+|.++.... ...+|+..|+..+...|+...+ -+.+|..|.+.|
T Consensus 76 ~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~ 155 (203)
T PF13525_consen 76 PKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRG 155 (203)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred cchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 556667888888876543 3458999999999999986422 245788999999
Q ss_pred CHHHHHHHHHHHHHhCCCChhHHHHHHHHHHH
Q 040440 307 KKDEAEKQFEKFRRLVPRNHPYREYFVDNMVA 338 (355)
Q Consensus 307 ~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~ 338 (355)
.+..|+..++.+++..|+......-+..+..+
T Consensus 156 ~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~ 187 (203)
T PF13525_consen 156 KYKAAIIRFQYVIENYPDTPAAEEALARLAEA 187 (203)
T ss_dssp -HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHCCCCchHHHHHHHHHHH
Confidence 99999999999999999875554443333333
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.3e-08 Score=86.76 Aligned_cols=103 Identities=11% Similarity=0.064 Sum_probs=84.9
Q ss_pred CHHHHHHHHHHHH---HcCCCCHHHHHHHHHHHHHc---------cCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcC
Q 040440 130 SYEEKEKEIEQHL---AANPNDIEALQTLMEVRIKS---------QKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAG 197 (355)
Q Consensus 130 ~~~~A~~~~~~~l---~~~p~~~~~~~~la~~~~~~---------g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g 197 (355)
+.+.|..+|.+++ +.+|+...++..++.+++.. .+..+|.+..+++++++|.++.++..+|.+....+
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhc
Confidence 6678888899999 88888888888888888754 34567888888888889999888888898888888
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCc
Q 040440 198 ESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDK 232 (355)
Q Consensus 198 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 232 (355)
+++.|+..|++++.++|+...+++..|.+....|+
T Consensus 353 ~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~ 387 (458)
T PRK11906 353 QAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEK 387 (458)
T ss_pred chhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCC
Confidence 89999999999999888888888777766655554
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=6.9e-09 Score=77.51 Aligned_cols=99 Identities=11% Similarity=-0.090 Sum_probs=81.4
Q ss_pred cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 040440 144 ANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGL 223 (355)
Q Consensus 144 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 223 (355)
..++..+..+..|.-++..|++++|...|+-+...++.+.+.|..||.++..+++|++|+..|..+..++++++...+..
T Consensus 32 is~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~a 111 (165)
T PRK15331 32 IPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFT 111 (165)
T ss_pred CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchH
Confidence 34455677888888888889999999999888888888888888888888888999999999888888888888888888
Q ss_pred HHHHhccCchHHHHHHHHHHHHHHHHh
Q 040440 224 VMAYDGSDKKLNEVEKRIEKAMERCKK 250 (355)
Q Consensus 224 ~~~~~~~~~~~~~a~~~~~~Al~~~~~ 250 (355)
|.|+...|+ ..+|+..++.
T Consensus 112 gqC~l~l~~--------~~~A~~~f~~ 130 (165)
T PRK15331 112 GQCQLLMRK--------AAKARQCFEL 130 (165)
T ss_pred HHHHHHhCC--------HHHHHHHHHH
Confidence 888888887 5666665555
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.9e-08 Score=78.72 Aligned_cols=107 Identities=20% Similarity=0.231 Sum_probs=72.7
Q ss_pred CchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHH
Q 040440 181 NEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDF 260 (355)
Q Consensus 181 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~ 260 (355)
.....++.+|..+...|++++|+.+|+++++..|+... ...+
T Consensus 33 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~--------------------------------------~~~~ 74 (172)
T PRK02603 33 KEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPND--------------------------------------RSYI 74 (172)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccch--------------------------------------HHHH
Confidence 34456888899899999999999999999887654321 0123
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHhCCCC
Q 040440 261 KLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRK--------------KDEAEKQFEKFRRLVPRN 325 (355)
Q Consensus 261 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~--------------~~~A~~~~~~~l~~~p~~ 325 (355)
+..+|.++...|++++|+..+++++...|.+...+..+|.++...|+ +++|.+++++++..+|++
T Consensus 75 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 75 LYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence 34445555555556666666666666666555555556666655554 688999999999999986
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.9e-09 Score=70.21 Aligned_cols=65 Identities=26% Similarity=0.360 Sum_probs=37.9
Q ss_pred HHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 040440 160 IKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLV 224 (355)
Q Consensus 160 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 224 (355)
+..|++++|+..|++++..+|++..+++.+|.++...|++++|...+++++..+|+++..+..++
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a 66 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLA 66 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHh
Confidence 34556666666666666666666666666666666666666666666666666665555444443
|
... |
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=7.1e-08 Score=87.86 Aligned_cols=140 Identities=16% Similarity=0.115 Sum_probs=106.7
Q ss_pred CCCCHHHHH--HHHHHHHHccC---HHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcC--------CHHHHHHHHHHHHh
Q 040440 145 NPNDIEALQ--TLMEVRIKSQK---LVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAG--------ESEAAIKGFEEILR 211 (355)
Q Consensus 145 ~p~~~~~~~--~la~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g--------~~~~A~~~~~~~~~ 211 (355)
-|.+..+|. ..|..|...++ .++|+.+|+++++++|++..++..++.++.... +...+.+..++++.
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 456666654 45556655544 789999999999999999999988887775542 24456666666666
Q ss_pred h--CCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q 040440 212 K--DPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEE 288 (355)
Q Consensus 212 ~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 288 (355)
. ++.++.++..++......|+ +++|...+++ ....+ +...+..+|.++...|++++|++.|++++.++
T Consensus 413 l~~~~~~~~~~~ala~~~~~~g~--------~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 413 LPELNVLPRIYEILAVQALVKGK--------TDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLR 483 (517)
T ss_pred cccCcCChHHHHHHHHHHHhcCC--------HHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 4 67778888889988888888 5555555555 22345 47789999999999999999999999999999
Q ss_pred CCChH
Q 040440 289 PRDFR 293 (355)
Q Consensus 289 ~~~~~ 293 (355)
|.++.
T Consensus 484 P~~pt 488 (517)
T PRK10153 484 PGENT 488 (517)
T ss_pred CCCch
Confidence 98775
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.8e-08 Score=75.34 Aligned_cols=110 Identities=15% Similarity=0.181 Sum_probs=96.9
Q ss_pred hhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Q 040440 211 RKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEP 289 (355)
Q Consensus 211 ~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~ 289 (355)
.+.++..+..+..|.-+...|+ +++|..+|+- ...++.+..++..||.++..+++|++|+..|-.+..+++
T Consensus 31 gis~~~le~iY~~Ay~~y~~Gk--------~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~ 102 (165)
T PRK15331 31 GIPQDMMDGLYAHAYEFYNQGR--------LDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK 102 (165)
T ss_pred CCCHHHHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 3445556778888988999999 9999999988 456788899999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHH
Q 040440 290 RDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHPYR 329 (355)
Q Consensus 290 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~ 329 (355)
+|+...+..|.|+..+|+.++|+..|+.++. .|.+...+
T Consensus 103 ~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~-~~~~~~l~ 141 (165)
T PRK15331 103 NDYRPVFFTGQCQLLMRKAAKARQCFELVNE-RTEDESLR 141 (165)
T ss_pred CCCCccchHHHHHHHhCCHHHHHHHHHHHHh-CcchHHHH
Confidence 9999999999999999999999999999998 46654443
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.6e-08 Score=86.81 Aligned_cols=111 Identities=19% Similarity=0.226 Sum_probs=104.5
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 040440 130 SYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEI 209 (355)
Q Consensus 130 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 209 (355)
+++.|++++++..+.+|+ +...++.++...++-.+|+..++++++..|.+...+...+..+...++++.|+.+.+++
T Consensus 184 ~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~a 260 (395)
T PF09295_consen 184 RYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEIAKKA 260 (395)
T ss_pred cHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 899999999999998875 56678999999999999999999999999999999999999999999999999999999
Q ss_pred HhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhh
Q 040440 210 LRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKE 251 (355)
Q Consensus 210 ~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~ 251 (355)
++..|.+...|+.|+.+|...|+ +++|+-.+...
T Consensus 261 v~lsP~~f~~W~~La~~Yi~~~d--------~e~ALlaLNs~ 294 (395)
T PF09295_consen 261 VELSPSEFETWYQLAECYIQLGD--------FENALLALNSC 294 (395)
T ss_pred HHhCchhHHHHHHHHHHHHhcCC--------HHHHHHHHhcC
Confidence 99999999999999999999999 99999888773
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.97 E-value=6e-07 Score=73.76 Aligned_cols=188 Identities=26% Similarity=0.256 Sum_probs=152.1
Q ss_pred CCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHH-HHHHcCCHHHHHHH
Q 040440 129 VSYEEKEKEIEQHLA--ANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQ-VQSYAGESEAAIKG 205 (355)
Q Consensus 129 ~~~~~A~~~~~~~l~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~-~~~~~g~~~~A~~~ 205 (355)
.++..+...+...+. ..+.....+...+..+...+++..++..+.+++...+.........+. ++...|++++|...
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 152 (291)
T COG0457 73 GRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALEL 152 (291)
T ss_pred ccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHH
Confidence 378888888888887 678888899999999999999999999999999887776555556666 89999999999999
Q ss_pred HHHHHhhCC---CCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hccCCc-hHHHHHHHHHHHHHccCHHHHHHH
Q 040440 206 FEEILRKDP---LRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSD-LRDFKLLIAQIKVMESKHSEALRV 280 (355)
Q Consensus 206 ~~~~~~~~p---~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~ 280 (355)
+++++...+ .........+..+...++ +++++..+.+ ....+. ....+..++..+...+++++|...
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 224 (291)
T COG0457 153 YEKALELDPELNELAEALLALGALLEALGR--------YEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEY 224 (291)
T ss_pred HHHHHhcCCCccchHHHHHHhhhHHHHhcC--------HHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHH
Confidence 999988666 344455555555666666 6666666666 333444 577788889999999999999999
Q ss_pred HHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 040440 281 YEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPR 324 (355)
Q Consensus 281 ~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~ 324 (355)
+..++...|.....+..++..+...|.++++...+.+.+...|.
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 225 YEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 99999998876777888888888778899999999999999886
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.3e-08 Score=84.74 Aligned_cols=107 Identities=19% Similarity=0.252 Sum_probs=93.6
Q ss_pred hccCCHHHHHHHHHHHHHcCC----CC-----------HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHH
Q 040440 126 REDVSYEEKEKEIEQHLAANP----ND-----------IEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKA 190 (355)
Q Consensus 126 ~~~~~~~~A~~~~~~~l~~~p----~~-----------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la 190 (355)
+..++|..|...|++++..-. .+ ..++.+++.+|.++++|.+|+...+++++.+|++..+++..|
T Consensus 219 fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG 298 (397)
T KOG0543|consen 219 FKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRG 298 (397)
T ss_pred HhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHH
Confidence 444599999999999886322 11 346889999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCc
Q 040440 191 QVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDK 232 (355)
Q Consensus 191 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 232 (355)
.++...|+|+.|+..|++++++.|.|..+...+..+..+..+
T Consensus 299 ~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~ 340 (397)
T KOG0543|consen 299 QALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIRE 340 (397)
T ss_pred HHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999998888877665544
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.7e-08 Score=85.12 Aligned_cols=154 Identities=19% Similarity=0.157 Sum_probs=125.3
Q ss_pred cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcC--CHHHHHHH
Q 040440 128 DVSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAG--ESEAAIKG 205 (355)
Q Consensus 128 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g--~~~~A~~~ 205 (355)
.+++++|++.+.+. ++.+.......+|...++++.|.+.++.+.+.+.+..-.....+++....| .+.+|...
T Consensus 115 ~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~ 189 (290)
T PF04733_consen 115 EGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYI 189 (290)
T ss_dssp CCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHH
T ss_pred cCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHH
Confidence 34888888877654 678888899999999999999999999998887776666666666666666 69999999
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHHHccCH-HHHHHHHHH
Q 040440 206 FEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQIKVMESKH-SEALRVYEE 283 (355)
Q Consensus 206 ~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~~~g~~-~~A~~~~~~ 283 (355)
|+++....+..+..+..++.+...+|+ |++|.+.+++ ...++.+.+++.+++.+....|+. +.+.+++.+
T Consensus 190 f~El~~~~~~t~~~lng~A~~~l~~~~--------~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~q 261 (290)
T PF04733_consen 190 FEELSDKFGSTPKLLNGLAVCHLQLGH--------YEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQ 261 (290)
T ss_dssp HHHHHCCS--SHHHHHHHHHHHHHCT---------HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHH
T ss_pred HHHHHhccCCCHHHHHHHHHHHHHhCC--------HHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHH
Confidence 999998888899999999999999999 8888888877 677889999999999999999998 677788888
Q ss_pred HHHhCCCChHH
Q 040440 284 LVKEEPRDFRP 294 (355)
Q Consensus 284 ~l~~~~~~~~~ 294 (355)
+...+|+++.+
T Consensus 262 L~~~~p~h~~~ 272 (290)
T PF04733_consen 262 LKQSNPNHPLV 272 (290)
T ss_dssp CHHHTTTSHHH
T ss_pred HHHhCCCChHH
Confidence 88888877643
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.96 E-value=6.3e-09 Score=68.77 Aligned_cols=69 Identities=25% Similarity=0.357 Sum_probs=58.6
Q ss_pred HHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 040440 156 MEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLV 224 (355)
Q Consensus 156 a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 224 (355)
..+|...+++++|++++++++..+|++...+..+|.++...|++++|++.|+++++..|++.......+
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a 70 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRA 70 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence 467888899999999999999999988888889999999999999999999999998888877655443
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.95 E-value=6.7e-09 Score=68.64 Aligned_cols=65 Identities=25% Similarity=0.303 Sum_probs=61.1
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhH
Q 040440 264 IAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHPY 328 (355)
Q Consensus 264 la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 328 (355)
|..+|...+++++|++++++++..+|+++..|..+|.++..+|++++|...|+++++..|++...
T Consensus 1 l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~ 65 (73)
T PF13371_consen 1 LKQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDA 65 (73)
T ss_pred CHHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHH
Confidence 35788999999999999999999999999999999999999999999999999999999987554
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=98.95 E-value=2.9e-09 Score=69.27 Aligned_cols=63 Identities=22% Similarity=0.347 Sum_probs=57.2
Q ss_pred HHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHH
Q 040440 269 VMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHPYREY 331 (355)
Q Consensus 269 ~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~ 331 (355)
+..|++++|++.|++++..+|++..+++.++.+|.+.|++++|...+++++..+|+++.+...
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l 64 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQL 64 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 578999999999999999999999999999999999999999999999999999987555433
|
... |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=2.1e-07 Score=80.98 Aligned_cols=157 Identities=12% Similarity=0.088 Sum_probs=86.2
Q ss_pred HHHHHHHHHcc---CHHHHHHHHHHHH---HcCCCchHHHHHHHHHHHHc---------CCHHHHHHHHHHHHhhCCCCH
Q 040440 153 QTLMEVRIKSQ---KLVEAVDVIDRLI---ELEPNEFEWQLLKAQVQSYA---------GESEAAIKGFEEILRKDPLRV 217 (355)
Q Consensus 153 ~~la~~~~~~g---~~~~A~~~~~~~~---~~~~~~~~~~~~la~~~~~~---------g~~~~A~~~~~~~~~~~p~~~ 217 (355)
+..|......+ ..+.|+.+|.+++ +++|+...++..++.++... .+..+|.+..+++++++|.|+
T Consensus 259 ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da 338 (458)
T PRK11906 259 MLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDG 338 (458)
T ss_pred HHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCH
Confidence 44444443333 2345666677777 66666666666666655533 133456666666666666666
Q ss_pred HHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHH
Q 040440 218 EAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYL 296 (355)
Q Consensus 218 ~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~ 296 (355)
.+...+|.+....++ ++.|+..+++ ....|+....++..|.+....|+.++|++.++++++++|....+-.
T Consensus 339 ~a~~~~g~~~~~~~~--------~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~ 410 (458)
T PRK11906 339 KILAIMGLITGLSGQ--------AKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVV 410 (458)
T ss_pred HHHHHHHHHHHhhcc--------hhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHH
Confidence 666666666666665 4444444443 3335666666666666666666666666666666666664433222
Q ss_pred HHHHH-HHHcCCHHHHHHHHHH
Q 040440 297 CQGII-YTLLRKKDEAEKQFEK 317 (355)
Q Consensus 297 ~l~~~-~~~~g~~~~A~~~~~~ 317 (355)
..-.+ .+.....++|+..|-+
T Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~ 432 (458)
T PRK11906 411 IKECVDMYVPNPLKNNIKLYYK 432 (458)
T ss_pred HHHHHHHHcCCchhhhHHHHhh
Confidence 22112 2223334555555443
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.1e-07 Score=68.48 Aligned_cols=91 Identities=19% Similarity=0.080 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCc---hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---CHHHHHHH
Q 040440 150 EALQTLMEVRIKSQKLVEAVDVIDRLIELEPNE---FEWQLLKAQVQSYAGESEAAIKGFEEILRKDPL---RVEAYHGL 223 (355)
Q Consensus 150 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~---~~~~~~~l 223 (355)
.+++.+|.++-..|+.++|+.+|++++...... ..+++.+|..+..+|++++|+..+++.+...|+ +......+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL 81 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence 467888899999999999999999998875443 447888999999999999999999999988887 66666677
Q ss_pred HHHHhccCchHHHHHHHHHHHHHHH
Q 040440 224 VMAYDGSDKKLNEVEKRIEKAMERC 248 (355)
Q Consensus 224 ~~~~~~~~~~~~~a~~~~~~Al~~~ 248 (355)
+.++...|+ .++|++.+
T Consensus 82 Al~L~~~gr--------~~eAl~~~ 98 (120)
T PF12688_consen 82 ALALYNLGR--------PKEALEWL 98 (120)
T ss_pred HHHHHHCCC--------HHHHHHHH
Confidence 777777777 66666654
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=98.92 E-value=2.2e-08 Score=84.89 Aligned_cols=144 Identities=19% Similarity=0.197 Sum_probs=109.5
Q ss_pred cCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--CC----HHHHHHHHHHHhccCchHHH
Q 040440 163 QKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDP--LR----VEAYHGLVMAYDGSDKKLNE 236 (355)
Q Consensus 163 g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p--~~----~~~~~~l~~~~~~~~~~~~~ 236 (355)
.++++|...|+++ |.+|...|++++|.+.|.++....- ++ ...+...+.++... ..+.
T Consensus 29 ~~~e~Aa~~y~~A--------------a~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~--~~~~ 92 (282)
T PF14938_consen 29 PDYEEAADLYEKA--------------ANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG--DPDE 92 (282)
T ss_dssp HHHHHHHHHHHHH--------------HHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT--THHH
T ss_pred CCHHHHHHHHHHH--------------HHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh--CHHH
Confidence 3677777777665 5677888889999988888876632 11 23355666666555 3888
Q ss_pred HHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHhCCCC------hHHHHHHHHHHHHcCCHH
Q 040440 237 VEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVME-SKHSEALRVYEELVKEEPRD------FRPYLCQGIIYTLLRKKD 309 (355)
Q Consensus 237 a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~~l~~~~~~------~~~~~~l~~~~~~~g~~~ 309 (355)
+...+++|++++............+..+|.+|... |++++|+++|+++++....+ ...+..+|.++...|+|+
T Consensus 93 Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~ 172 (282)
T PF14938_consen 93 AIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYE 172 (282)
T ss_dssp HHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHH
Confidence 89999999999988777677788899999999999 99999999999999864322 356788999999999999
Q ss_pred HHHHHHHHHHHhC
Q 040440 310 EAEKQFEKFRRLV 322 (355)
Q Consensus 310 ~A~~~~~~~l~~~ 322 (355)
+|++.|++.....
T Consensus 173 ~A~~~~e~~~~~~ 185 (282)
T PF14938_consen 173 EAIEIYEEVAKKC 185 (282)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998754
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=6.1e-07 Score=89.15 Aligned_cols=195 Identities=12% Similarity=0.028 Sum_probs=148.0
Q ss_pred cCCHHHHHHHHHHHHHcCCC---------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCch-----HHHHHHHHHH
Q 040440 128 DVSYEEKEKEIEQHLAANPN---------DIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEF-----EWQLLKAQVQ 193 (355)
Q Consensus 128 ~~~~~~A~~~~~~~l~~~p~---------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~la~~~ 193 (355)
.++++++...++++....+. .......++.++...|++++|...+++++...+... .+...+|.++
T Consensus 422 ~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~ 501 (903)
T PRK04841 422 QHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVH 501 (903)
T ss_pred CCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHH
Confidence 44889999999888653221 133455678888999999999999999988544322 2456788889
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhcc--CCchHHHHHHHH
Q 040440 194 SYAGESEAAIKGFEEILRKDPLR------VEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKK--KSDLRDFKLLIA 265 (355)
Q Consensus 194 ~~~g~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~--~~~~~~~~~~la 265 (355)
...|++++|...+++++...... ...+..++.++...|+ ++.+...+++++...+.... .+.....+..+|
T Consensus 502 ~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 580 (903)
T PRK04841 502 HCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGF-LQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRA 580 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHHhccccccHHHHHHHHHH
Confidence 99999999999999999764321 2345677888999998 88888888888888776322 122334466789
Q ss_pred HHHHHccCHHHHHHHHHHHHHhCCC-----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 040440 266 QIKVMESKHSEALRVYEELVKEEPR-----DFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVP 323 (355)
Q Consensus 266 ~~~~~~g~~~~A~~~~~~~l~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p 323 (355)
.++...|++++|...+++++..... ....+..++.++...|++++|...+.++..+..
T Consensus 581 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~ 643 (903)
T PRK04841 581 QLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLG 643 (903)
T ss_pred HHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 9999999999999999999875321 244566789999999999999999999987643
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.89 E-value=9.4e-07 Score=70.74 Aligned_cols=167 Identities=14% Similarity=0.102 Sum_probs=132.0
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 040440 148 DIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAY 227 (355)
Q Consensus 148 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 227 (355)
+......-|.+|.+.|++++|+....+. .+.++...-..++.+..+++-|.+.++++.+++.+.. ...|+..+
T Consensus 107 n~i~~l~aa~i~~~~~~~deAl~~~~~~-----~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~t--LtQLA~aw 179 (299)
T KOG3081|consen 107 NLIDLLLAAIIYMHDGDFDEALKALHLG-----ENLEAAALNVQILLKMHRFDLAEKELKKMQQIDEDAT--LTQLAQAW 179 (299)
T ss_pred hHHHHHHhhHHhhcCCChHHHHHHHhcc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHH--HHHHHHHH
Confidence 4455667778999999999999988763 3556666777889999999999999999998765543 33344443
Q ss_pred h--ccCchHHHHHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 040440 228 D--GSDKKLNEVEKRIEKAMERCKKEK-KKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTL 304 (355)
Q Consensus 228 ~--~~~~~~~~a~~~~~~Al~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~ 304 (355)
. ..|. ..+..|.-+|++.. +.+..+.+....+.+...+|+|++|...++.++..++++++++.++..+-..
T Consensus 180 v~la~gg------ek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~ 253 (299)
T KOG3081|consen 180 VKLATGG------EKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALH 253 (299)
T ss_pred HHHhccc------hhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHH
Confidence 2 2222 12888999999954 4888899999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHH-HHHHHHHhCCCChh
Q 040440 305 LRKKDEAEK-QFEKFRRLVPRNHP 327 (355)
Q Consensus 305 ~g~~~~A~~-~~~~~l~~~p~~~~ 327 (355)
.|.-.++.. ++.+.....|+.+-
T Consensus 254 ~Gkd~~~~~r~l~QLk~~~p~h~~ 277 (299)
T KOG3081|consen 254 LGKDAEVTERNLSQLKLSHPEHPF 277 (299)
T ss_pred hCCChHHHHHHHHHHHhcCCcchH
Confidence 998866654 56666667786533
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.8e-06 Score=79.90 Aligned_cols=199 Identities=17% Similarity=0.079 Sum_probs=144.1
Q ss_pred hccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHH
Q 040440 126 REDVSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKG 205 (355)
Q Consensus 126 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 205 (355)
.+.+++.+|.....+.++..|+..-+....|..+.+.|+.++|..+++..-...+++...+-.+-.+|..+|++++|..+
T Consensus 20 ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~ 99 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHL 99 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHH
Confidence 34458999999999999999999999999999999999999999888887777778888888999999999999999999
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHhccCchHHH---HHHH----------HHH-----------------------HHHHHH
Q 040440 206 FEEILRKDPLRVEAYHGLVMAYDGSDKKLNE---VEKR----------IEK-----------------------AMERCK 249 (355)
Q Consensus 206 ~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~---a~~~----------~~~-----------------------Al~~~~ 249 (355)
|++++..+|. .+..+.+-.+|.+.+..... +.+. +-. |...++
T Consensus 100 Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~ 178 (932)
T KOG2053|consen 100 YERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQ 178 (932)
T ss_pred HHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHH
Confidence 9999999999 77777777777776653111 1000 001 111111
Q ss_pred h-hccC-Cch-HHHHHHHHHHHHHccCHHHHHHHHHHHH-H-hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 040440 250 K-EKKK-SDL-RDFKLLIAQIKVMESKHSEALRVYEELV-K-EEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPR 324 (355)
Q Consensus 250 ~-~~~~-~~~-~~~~~~la~~~~~~g~~~~A~~~~~~~l-~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~ 324 (355)
. .... +.. ..=....-.++..+|++++|.+++..-+ + ..+.+...-......+...++|.+-.+...+++...++
T Consensus 179 ~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~D 258 (932)
T KOG2053|consen 179 KLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGND 258 (932)
T ss_pred HHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCc
Confidence 1 0011 000 0011222335567789999999984333 2 33444455556678888999999999999999999888
Q ss_pred C
Q 040440 325 N 325 (355)
Q Consensus 325 ~ 325 (355)
+
T Consensus 259 d 259 (932)
T KOG2053|consen 259 D 259 (932)
T ss_pred c
Confidence 6
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.86 E-value=2.6e-09 Score=87.98 Aligned_cols=202 Identities=12% Similarity=0.061 Sum_probs=133.5
Q ss_pred hccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHH
Q 040440 126 REDVSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKG 205 (355)
Q Consensus 126 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 205 (355)
+..++|++|+.+|.+.+..+|.++..+.+.+.+|++...|..|...++.++.++.....+|...+..-..+|...+|.+.
T Consensus 108 FKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~EAKkD 187 (536)
T KOG4648|consen 108 FKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNMEAKKD 187 (536)
T ss_pred hhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHh
Confidence 34459999999999999999999999999999999999999999999999999988889999999999999999999999
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHhccCchH-H-------HHH-------------------HHHHHHHHHHHh-hccCCch
Q 040440 206 FEEILRKDPLRVEAYHGLVMAYDGSDKKL-N-------EVE-------------------KRIEKAMERCKK-EKKKSDL 257 (355)
Q Consensus 206 ~~~~~~~~p~~~~~~~~l~~~~~~~~~~~-~-------~a~-------------------~~~~~Al~~~~~-~~~~~~~ 257 (355)
++.++++.|++.+....++.+-.-..... . .|. +.++.++..+.. ......+
T Consensus 188 ~E~vL~LEP~~~ELkK~~a~i~Sl~E~~I~~KsT~G~~~A~Q~~~Q~l~~K~~G~~Fsk~~~~~~~i~~~~~~~A~~~~~ 267 (536)
T KOG4648|consen 188 CETVLALEPKNIELKKSLARINSLRERKIATKSTPGFTPARQGMIQILPIKKPGYKFSKKAMRSVPVVDVVSPRATIDDS 267 (536)
T ss_pred HHHHHhhCcccHHHHHHHHHhcchHhhhHHhhcCCCCCccccchhhhccccCcchhhhhhhccccceeEeeccccccCcc
Confidence 99999999998877655554432111100 0 000 111111111111 0000111
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhH
Q 040440 258 RDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHPY 328 (355)
Q Consensus 258 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 328 (355)
..+... +..|.+..+++.++...-+.+..+|.........+.+-.-.|...++...++.++.+.|.+...
T Consensus 268 ~~L~~~-~~~~~KI~~~~~~~~~~~~~~~~~~s~~~~~s~~~~A~T~~~~~~E~K~~~~T~~~~~P~~~~~ 337 (536)
T KOG4648|consen 268 NQLRIS-DEDIDKIFNSNCGIIEEVKKTNPKPTPMPDTSGPPKAETIAKTSKEVKPTKQTAVKVAPAVETP 337 (536)
T ss_pred ccCccc-HHHHHHHhhcchhHHHHHHhcCCCCCcCcccCCCchhHHHHhhhhhcCcchhheeeeccccccc
Confidence 111111 4445555556666665555555555443344444444455556666666677776666665433
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.5e-07 Score=76.20 Aligned_cols=98 Identities=16% Similarity=0.173 Sum_probs=87.9
Q ss_pred hhccCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC---chHHHHHHHHHHHHcCC
Q 040440 125 AREDVSYEEKEKEIEQHLAANPND---IEALQTLMEVRIKSQKLVEAVDVIDRLIELEPN---EFEWQLLKAQVQSYAGE 198 (355)
Q Consensus 125 ~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~la~~~~~~g~ 198 (355)
.|..++|.+|+..|...++..|+. +.+++.||++++.+|++++|...|..+++..|+ -++.++.+|.+...+|+
T Consensus 151 ~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~ 230 (262)
T COG1729 151 LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGN 230 (262)
T ss_pred HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcC
Confidence 366679999999999999999985 689999999999999999999999999998765 45789999999999999
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHH
Q 040440 199 SEAAIKGFEEILRKDPLRVEAYHG 222 (355)
Q Consensus 199 ~~~A~~~~~~~~~~~p~~~~~~~~ 222 (355)
.++|...|+++++.+|+...+...
T Consensus 231 ~d~A~atl~qv~k~YP~t~aA~~A 254 (262)
T COG1729 231 TDEACATLQQVIKRYPGTDAAKLA 254 (262)
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHH
Confidence 999999999999999998776543
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.82 E-value=2e-06 Score=65.20 Aligned_cols=150 Identities=19% Similarity=0.143 Sum_probs=94.0
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHc-CCCchHHHHHHHHHHHHcCCHHHHHHHHHH
Q 040440 130 SYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIEL-EPNEFEWQLLKAQVQSYAGESEAAIKGFEE 208 (355)
Q Consensus 130 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 208 (355)
|.+.......+.++..|.. .-.+.+|....+.|++.+|...|++++.- ..++...+..+++..+..+++..|...+++
T Consensus 71 dP~R~~Rea~~~~~~ApTv-qnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~ 149 (251)
T COG4700 71 DPERHLREATEELAIAPTV-QNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLED 149 (251)
T ss_pred ChhHHHHHHHHHHhhchhH-HHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHH
Confidence 5555555555555544442 22455566666666666666666665532 334445555555666666666666666665
Q ss_pred HHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q 040440 209 ILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEE 288 (355)
Q Consensus 209 ~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 288 (355)
..+.+|. ...++....+|+.|..+|++.+|...|+.++...
T Consensus 150 l~e~~pa---------------------------------------~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~y 190 (251)
T COG4700 150 LMEYNPA---------------------------------------FRSPDGHLLFARTLAAQGKYADAESAFEVAISYY 190 (251)
T ss_pred HhhcCCc---------------------------------------cCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhC
Confidence 5555442 1223345556777788888888888888888888
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 040440 289 PRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRR 320 (355)
Q Consensus 289 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 320 (355)
| .+......+..+.++|+..+|...+....+
T Consensus 191 p-g~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 191 P-GPQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred C-CHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 8 677777888888888888777766655544
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.81 E-value=5e-06 Score=68.18 Aligned_cols=187 Identities=27% Similarity=0.276 Sum_probs=156.8
Q ss_pred CHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHccCHHHHHHHHHHHHH--cCCCchHHHHHHHHHHHHcCCHHHHHHH
Q 040440 130 SYEEKEKEIEQHLAANPN--DIEALQTLMEVRIKSQKLVEAVDVIDRLIE--LEPNEFEWQLLKAQVQSYAGESEAAIKG 205 (355)
Q Consensus 130 ~~~~A~~~~~~~l~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~ 205 (355)
.+..+...+...+...+. ........+..+...+++..+...+..... ..+.....+...+..+...+++.+++..
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (291)
T COG0457 38 ELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALEL 117 (291)
T ss_pred hHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHH
Confidence 556677888888887776 478888999999999999999999999987 6777888999999999999999999999
Q ss_pred HHHHHhhCCCCHHHHHHHHH-HHhccCchHHHHHHHHHHHHHHHHh-hccCC---chHHHHHHHHHHHHHccCHHHHHHH
Q 040440 206 FEEILRKDPLRVEAYHGLVM-AYDGSDKKLNEVEKRIEKAMERCKK-EKKKS---DLRDFKLLIAQIKVMESKHSEALRV 280 (355)
Q Consensus 206 ~~~~~~~~p~~~~~~~~l~~-~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~---~~~~~~~~la~~~~~~g~~~~A~~~ 280 (355)
+.+++...+........... ++...|+ +++++..+.+ ....+ .........+..+...++++.|+..
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 189 (291)
T COG0457 118 LEKALALDPDPDLAEALLALGALYELGD--------YEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALEL 189 (291)
T ss_pred HHHHHcCCCCcchHHHHHHHHHHHHcCC--------HHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHH
Confidence 99999988877555555555 7888888 6666666655 22222 3455566667778889999999999
Q ss_pred HHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 040440 281 YEELVKEEPR-DFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPR 324 (355)
Q Consensus 281 ~~~~l~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~ 324 (355)
+.+++...+. ....+..++..+...+++++|...+..++...|.
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 234 (291)
T COG0457 190 LEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD 234 (291)
T ss_pred HHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc
Confidence 9999999998 6899999999999999999999999999999987
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=7.6e-08 Score=83.51 Aligned_cols=70 Identities=23% Similarity=0.223 Sum_probs=65.8
Q ss_pred cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHH---HHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 040440 144 ANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEW---QLLKAQVQSYAGESEAAIKGFEEILRKD 213 (355)
Q Consensus 144 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~la~~~~~~g~~~~A~~~~~~~~~~~ 213 (355)
.+|++..+++++|.+|...|+|++|+..|+++++++|++..+ |+++|.+|..+|++++|++.++++++..
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels 142 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY 142 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 378999999999999999999999999999999999999854 9999999999999999999999999973
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=98.78 E-value=5.4e-07 Score=64.90 Aligned_cols=99 Identities=18% Similarity=0.085 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHH
Q 040440 184 EWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLL 263 (355)
Q Consensus 184 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~ 263 (355)
.+++.+|.++-..|+.++|+.+|++++........ ....+..
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~--------------------------------------~~~a~i~ 43 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGAD--------------------------------------RRRALIQ 43 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchH--------------------------------------HHHHHHH
Confidence 35677778888888888888888888775443321 1233445
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCC---ChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 040440 264 IAQIKVMESKHSEALRVYEELVKEEPR---DFRPYLCQGIIYTLLRKKDEAEKQFEKFRR 320 (355)
Q Consensus 264 la~~~~~~g~~~~A~~~~~~~l~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 320 (355)
+|..+...|++++|+..+++.+...|+ +......++.++...|+.++|+..+-.++.
T Consensus 44 lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 44 LASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 566667777777777777777777676 556666677777777777777777766654
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.77 E-value=3.4e-06 Score=67.76 Aligned_cols=164 Identities=21% Similarity=0.163 Sum_probs=121.5
Q ss_pred hhccCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchH---HHHHHHHHHHHcC-
Q 040440 125 AREDVSYEEKEKEIEQHLAANPND---IEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFE---WQLLKAQVQSYAG- 197 (355)
Q Consensus 125 ~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~la~~~~~~g- 197 (355)
.+..++|++|+..|+.+....|.. ..+...++.++++.+++++|+..+++-+.+.|.+++ +++..|.+++..=
T Consensus 44 ~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~ 123 (254)
T COG4105 44 ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQID 123 (254)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCC
Confidence 466679999999999999988875 567889999999999999999999999999887655 5777777765432
Q ss_pred -------CHHHHHHHHHHHHhhCCCCHHH-----------------HHHHHHHHhccCchHHHHHHHHHHHHHHHHhhcc
Q 040440 198 -------ESEAAIKGFEEILRKDPLRVEA-----------------YHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKK 253 (355)
Q Consensus 198 -------~~~~A~~~~~~~~~~~p~~~~~-----------------~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~ 253 (355)
-..+|+..|++.+...|+..-+ -..++..|.+.|. +..|...+++.++-+ ..
T Consensus 124 ~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~-~~AA~nR~~~v~e~y---~~ 199 (254)
T COG4105 124 DVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGA-YVAAINRFEEVLENY---PD 199 (254)
T ss_pred ccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcC-hHHHHHHHHHHHhcc---cc
Confidence 2357888899999999975421 2355666777776 444444444444433 33
Q ss_pred CCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCh
Q 040440 254 KSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDF 292 (355)
Q Consensus 254 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~ 292 (355)
.+...+.+..+...|..+|-.++|...-.-+-...|++.
T Consensus 200 t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s~ 238 (254)
T COG4105 200 TSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDSQ 238 (254)
T ss_pred ccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCc
Confidence 455567788889999999999999887665555556554
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.76 E-value=3.4e-07 Score=74.44 Aligned_cols=157 Identities=13% Similarity=0.032 Sum_probs=129.8
Q ss_pred HHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHH
Q 040440 159 RIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVE 238 (355)
Q Consensus 159 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~ 238 (355)
+++..+|++|++++..-.+..|.+...+..+|.||+...+|.+|.++|++.-...|.........++.+...+.
T Consensus 20 lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i------ 93 (459)
T KOG4340|consen 20 LIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACI------ 93 (459)
T ss_pred HHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcc------
Confidence 46788999999999999999999999999999999999999999999999999999988888888888888888
Q ss_pred HHHHHHHHHHHhhccCC-chHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHH
Q 040440 239 KRIEKAMERCKKEKKKS-DLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEK 317 (355)
Q Consensus 239 ~~~~~Al~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 317 (355)
+..|+.+...+...+ -.......-+.+.+..+++..+....++.-. .++.....+.|.+.++.|++++|.+-|+.
T Consensus 94 --~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~--en~Ad~~in~gCllykegqyEaAvqkFqa 169 (459)
T KOG4340|consen 94 --YADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPS--ENEADGQINLGCLLYKEGQYEAAVQKFQA 169 (459)
T ss_pred --cHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccC--CCccchhccchheeeccccHHHHHHHHHH
Confidence 888888887754432 2233444556677778888888877776421 25678889999999999999999999999
Q ss_pred HHHhCCCC
Q 040440 318 FRRLVPRN 325 (355)
Q Consensus 318 ~l~~~p~~ 325 (355)
+++...-+
T Consensus 170 AlqvsGyq 177 (459)
T KOG4340|consen 170 ALQVSGYQ 177 (459)
T ss_pred HHhhcCCC
Confidence 99876433
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.76 E-value=2.3e-07 Score=67.88 Aligned_cols=96 Identities=25% Similarity=0.274 Sum_probs=73.7
Q ss_pred hhhccCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchH---HHHHHHHHHHHcC
Q 040440 124 SAREDVSYEEKEKEIEQHLAANPND---IEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFE---WQLLKAQVQSYAG 197 (355)
Q Consensus 124 ~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~la~~~~~~g 197 (355)
++++.++|++|++.|+.+....|.. ..+...++.+|+..|++++|+..+++.++++|.++. +++..|.+++.+.
T Consensus 19 ~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~~ 98 (142)
T PF13512_consen 19 EALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQD 98 (142)
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHh
Confidence 3466678888888888888877763 567778888888888888888888888888776554 6777887777776
Q ss_pred C---------------HHHHHHHHHHHHhhCCCCHHH
Q 040440 198 E---------------SEAAIKGFEEILRKDPLRVEA 219 (355)
Q Consensus 198 ~---------------~~~A~~~~~~~~~~~p~~~~~ 219 (355)
. ..+|...|+++++..|+...+
T Consensus 99 ~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya 135 (142)
T PF13512_consen 99 EGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYA 135 (142)
T ss_pred hhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhH
Confidence 6 777888888888888876543
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.76 E-value=3.5e-06 Score=70.27 Aligned_cols=178 Identities=11% Similarity=0.024 Sum_probs=128.5
Q ss_pred hccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHH
Q 040440 126 REDVSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKG 205 (355)
Q Consensus 126 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 205 (355)
+--+||++|...|+-+.+.+.-+.+.+.+++.+++..|.|.+|...-.++ |+.+--...+-.+..+.|+-++-...
T Consensus 68 fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka----~k~pL~~RLlfhlahklndEk~~~~f 143 (557)
T KOG3785|consen 68 FHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKA----PKTPLCIRLLFHLAHKLNDEKRILTF 143 (557)
T ss_pred HhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhC----CCChHHHHHHHHHHHHhCcHHHHHHH
Confidence 44459999999999999988778999999999999999999999887765 55554444444555566665554443
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 040440 206 FEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQIKVMESKHSEALRVYEEL 284 (355)
Q Consensus 206 ~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 284 (355)
- +-+. +..+-...++.+....-. |++||+++++ +...++...+...+|.+|.++.-|+-+.+++.--
T Consensus 144 h-~~Lq---D~~EdqLSLAsvhYmR~H--------YQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vY 211 (557)
T KOG3785|consen 144 H-SSLQ---DTLEDQLSLASVHYMRMH--------YQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVY 211 (557)
T ss_pred H-HHHh---hhHHHHHhHHHHHHHHHH--------HHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHH
Confidence 3 3332 222333444444333223 8999999999 6777788888888999999999999999999999
Q ss_pred HHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 040440 285 VKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFR 319 (355)
Q Consensus 285 l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 319 (355)
+...|+...+.+..+...++.=+-..|..-.+...
T Consensus 212 L~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~la 246 (557)
T KOG3785|consen 212 LRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELA 246 (557)
T ss_pred HHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHH
Confidence 99999888888887777776544444444444433
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.75 E-value=4.9e-06 Score=66.59 Aligned_cols=140 Identities=16% Similarity=0.138 Sum_probs=120.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHH
Q 040440 185 WQLLKAQVQSYAGESEAAIKGFEEILRKD-PLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLL 263 (355)
Q Consensus 185 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~ 263 (355)
+.+.+..++.-.|+|.-....+.++++.+ |.++.....++.+.++.|+ .+.+..+++...+.-.++........+..+
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD-~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGD-IKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhccc-HHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 45566777888899999999999999998 5678888899999999998 666666666555554455556666777888
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 040440 264 IAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRN 325 (355)
Q Consensus 264 la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~ 325 (355)
.+.+|...+++..|...|.+++..++.++.+.++.+.|....|+..+|++.++.++.+.|..
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred hhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 89999999999999999999999999999999999999999999999999999999999975
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.73 E-value=2.2e-06 Score=64.95 Aligned_cols=106 Identities=21% Similarity=0.198 Sum_probs=88.7
Q ss_pred hccCCHHHHHHHHHHHHH-cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC--chHHHHHHHHHHHHcCCHHHH
Q 040440 126 REDVSYEEKEKEIEQHLA-ANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPN--EFEWQLLKAQVQSYAGESEAA 202 (355)
Q Consensus 126 ~~~~~~~~A~~~~~~~l~-~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~la~~~~~~g~~~~A 202 (355)
-+.+++.+|...|++++. ....+...+..++...+..+++..|...+++..+.+|. .++....+|..+...|++.+|
T Consensus 100 ~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~A 179 (251)
T COG4700 100 AELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADA 179 (251)
T ss_pred HHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhH
Confidence 444699999999999987 67788999999999999999999999999999998774 456788899999999999999
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHhccCc
Q 040440 203 IKGFEEILRKDPLRVEAYHGLVMAYDGSDK 232 (355)
Q Consensus 203 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 232 (355)
...|+.++...|+. ......+..+..+|+
T Consensus 180 esafe~a~~~ypg~-~ar~~Y~e~La~qgr 208 (251)
T COG4700 180 ESAFEVAISYYPGP-QARIYYAEMLAKQGR 208 (251)
T ss_pred HHHHHHHHHhCCCH-HHHHHHHHHHHHhcc
Confidence 99999999988763 333444555555554
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.72 E-value=8.3e-06 Score=65.46 Aligned_cols=196 Identities=19% Similarity=0.118 Sum_probs=129.4
Q ss_pred hhhhhhhhhccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHH--------------HHHHHHHHHHc-----
Q 040440 118 STKDTTSAREDVSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVE--------------AVDVIDRLIEL----- 178 (355)
Q Consensus 118 ~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~--------------A~~~~~~~~~~----- 178 (355)
++-+..++|..++|..++...++.-... .+.+....+...|+..|++.. |+..+....+.
T Consensus 11 ~LF~iRn~fY~Gnyq~~ine~~~~~~~~-~~~e~d~y~~raylAlg~~~~~~~eI~~~~~~~lqAvr~~a~~~~~e~~~~ 89 (299)
T KOG3081|consen 11 ELFNIRNYFYLGNYQQCINEAEKFSSSK-TDVELDVYMYRAYLALGQYQIVISEIKEGKATPLQAVRLLAEYLELESNKK 89 (299)
T ss_pred hHHHHHHHHHhhHHHHHHHHHHhhcccc-chhHHHHHHHHHHHHcccccccccccccccCChHHHHHHHHHHhhCcchhH
Confidence 3444555677778887777666654433 566666667777777776542 33333322211
Q ss_pred --------------CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHH
Q 040440 179 --------------EPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKA 244 (355)
Q Consensus 179 --------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A 244 (355)
...+..+...-+.+|...|++++|.+..... .+.++.-.-..+..++.+ ++-|
T Consensus 90 ~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~-----~~lE~~Al~VqI~lk~~r--------~d~A 156 (299)
T KOG3081|consen 90 SILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG-----ENLEAAALNVQILLKMHR--------FDLA 156 (299)
T ss_pred HHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc-----chHHHHHHHHHHHHHHHH--------HHHH
Confidence 1111123444557888899999998877662 345555555666666666 5555
Q ss_pred HHHHHhhccCCchHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 040440 245 MERCKKEKKKSDLRDFKLLIAQIKVM----ESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRR 320 (355)
Q Consensus 245 l~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 320 (355)
.+.+++.... ++-..+..||..+++ .+++.+|.-+|++.-+..+..+...+.++.++..+|+|++|...++.++.
T Consensus 157 ~~~lk~mq~i-ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~ 235 (299)
T KOG3081|consen 157 EKELKKMQQI-DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALD 235 (299)
T ss_pred HHHHHHHHcc-chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHh
Confidence 5555553322 223334445555543 36799999999999987777899999999999999999999999999999
Q ss_pred hCCCChhH
Q 040440 321 LVPRNHPY 328 (355)
Q Consensus 321 ~~p~~~~~ 328 (355)
.++++++.
T Consensus 236 kd~~dpet 243 (299)
T KOG3081|consen 236 KDAKDPET 243 (299)
T ss_pred ccCCCHHH
Confidence 99987443
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=98.72 E-value=6.8e-07 Score=74.59 Aligned_cols=197 Identities=11% Similarity=0.030 Sum_probs=142.4
Q ss_pred hhccC-CHHHHHHHHHHHHHcCCCC-----HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCch------HHHHHHHHH
Q 040440 125 AREDV-SYEEKEKEIEQHLAANPND-----IEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEF------EWQLLKAQV 192 (355)
Q Consensus 125 ~~~~~-~~~~A~~~~~~~l~~~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~------~~~~~la~~ 192 (355)
.+++. ++.+++.+....+..-... ..+...++..+...+.++++++.|+++++...++. .++..+|..
T Consensus 92 ~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgsl 171 (518)
T KOG1941|consen 92 SNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSL 171 (518)
T ss_pred HHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHH
Confidence 35555 6777777666666543222 35677799999999999999999999988743332 368889999
Q ss_pred HHHcCCHHHHHHHHHHHHhhCC----CCH------HHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHH
Q 040440 193 QSYAGESEAAIKGFEEILRKDP----LRV------EAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKL 262 (355)
Q Consensus 193 ~~~~g~~~~A~~~~~~~~~~~p----~~~------~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~ 262 (355)
+....|+++|.-+..++.++.. ++. ...+.++..+...|+ +..|.+.-++|.++.-...+.+.......
T Consensus 172 f~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~-LgdA~e~C~Ea~klal~~Gdra~~arc~~ 250 (518)
T KOG1941|consen 172 FAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGR-LGDAMECCEEAMKLALQHGDRALQARCLL 250 (518)
T ss_pred HHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHHHhCChHHHHHHHH
Confidence 9999999999999999988732 222 235677777888887 66677777777777666666667777788
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCC------CChHHHHHHHHHHHHcCCH-----HHHHHHHHHHHHhC
Q 040440 263 LIAQIKVMESKHSEALRVYEELVKEEP------RDFRPYLCQGIIYTLLRKK-----DEAEKQFEKFRRLV 322 (355)
Q Consensus 263 ~la~~~~~~g~~~~A~~~~~~~l~~~~------~~~~~~~~l~~~~~~~g~~-----~~A~~~~~~~l~~~ 322 (355)
.+|++|...|+.+.|...|+++...-. ....+....+.+.....-. -.|++.-++++++.
T Consensus 251 ~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgqv~al~g~Akc~~~~r~~~k~~~Crale~n~r~levA 321 (518)
T KOG1941|consen 251 CFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQVEALDGAAKCLETLRLQNKICNCRALEFNTRLLEVA 321 (518)
T ss_pred HHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHH
Confidence 899999999999999999999976422 1234444555554433322 34777777777764
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.71 E-value=7e-07 Score=65.41 Aligned_cols=120 Identities=20% Similarity=0.215 Sum_probs=89.4
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCc---hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH---HHH
Q 040440 148 DIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNE---FEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVE---AYH 221 (355)
Q Consensus 148 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~---~~~ 221 (355)
.+..++..|...++.|+|++|++.|+.+....|.. ..+.+.++.+|+..|++++|+..+++.++++|.++. +++
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y 88 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYY 88 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHH
Confidence 46678899999999999999999999999987754 458999999999999999999999999999988764 466
Q ss_pred HHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChH
Q 040440 222 GLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFR 293 (355)
Q Consensus 222 ~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~ 293 (355)
..|.++..... ..+..+- ..-...+...+|...|++++...|++..
T Consensus 89 ~~gL~~~~~~~----------~~~~~~~----------------~~drD~~~~~~A~~~f~~lv~~yP~S~y 134 (142)
T PF13512_consen 89 MRGLSYYEQDE----------GSLQSFF----------------RSDRDPTPARQAFRDFEQLVRRYPNSEY 134 (142)
T ss_pred HHHHHHHHHhh----------hHHhhhc----------------ccccCcHHHHHHHHHHHHHHHHCcCChh
Confidence 66666654421 1111100 1112234456888888888888887643
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.71 E-value=3.9e-06 Score=83.52 Aligned_cols=173 Identities=15% Similarity=0.026 Sum_probs=130.3
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC---------chHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH---
Q 040440 150 EALQTLMEVRIKSQKLVEAVDVIDRLIELEPN---------EFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRV--- 217 (355)
Q Consensus 150 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~---------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~--- 217 (355)
......+.++...|++++|...+.++....+. .......++.++...|++++|...+++++...+...
T Consensus 410 ~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 489 (903)
T PRK04841 410 RLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYS 489 (903)
T ss_pred chHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHH
Confidence 34456677788899999999999988664221 123445677888999999999999999998654322
Q ss_pred --HHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-----
Q 040440 218 --EAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPR----- 290 (355)
Q Consensus 218 --~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~----- 290 (355)
.+...++.++...|+ ++.+...+++++...............+..+|.++...|++++|...+++++.....
T Consensus 490 ~~~a~~~lg~~~~~~G~-~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~ 568 (903)
T PRK04841 490 RIVATSVLGEVHHCKGE-LARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQ 568 (903)
T ss_pred HHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcccc
Confidence 245677888888888 777777788887776654333333456778899999999999999999999875221
Q ss_pred ---ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 040440 291 ---DFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVP 323 (355)
Q Consensus 291 ---~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p 323 (355)
....+..+|.++...|++++|...+++++....
T Consensus 569 ~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~ 604 (903)
T PRK04841 569 LPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLS 604 (903)
T ss_pred ccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhh
Confidence 123456788999999999999999999988643
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.70 E-value=6.5e-06 Score=69.73 Aligned_cols=196 Identities=14% Similarity=0.102 Sum_probs=139.1
Q ss_pred hhhccCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHH
Q 040440 124 SAREDVSYEEKEKEIEQHLAANPN-DIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAA 202 (355)
Q Consensus 124 ~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 202 (355)
.+.+++|++.+-.++.++-+..++ ...+....+......|+++.|..-..++.+..|.++.+......+|...|++.+.
T Consensus 127 AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~l 206 (400)
T COG3071 127 AAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQAL 206 (400)
T ss_pred HHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHH
Confidence 345555777777777777665333 3445666667777777777777777777777777777777677777777777666
Q ss_pred HHHHHHHHhh------------------------------------------CCCCHHHHHHHHHHHhccCchHHHHHHH
Q 040440 203 IKGFEEILRK------------------------------------------DPLRVEAYHGLVMAYDGSDKKLNEVEKR 240 (355)
Q Consensus 203 ~~~~~~~~~~------------------------------------------~p~~~~~~~~l~~~~~~~~~~~~~a~~~ 240 (355)
..+..++.+. -..++.....++.-+...|+ .++|...
T Consensus 207 l~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~-~~~A~~~ 285 (400)
T COG3071 207 LAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGD-HDEAQEI 285 (400)
T ss_pred HHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCC-hHHHHHH
Confidence 6555443221 01234555566666666665 4444322
Q ss_pred H------------------------HHHHHHHHh-hccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHH
Q 040440 241 I------------------------EKAMERCKK-EKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPY 295 (355)
Q Consensus 241 ~------------------------~~Al~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~ 295 (355)
. .+-++..++ ....++++.++..+|..+.+.+.|.+|..+|+.+++..| +...+
T Consensus 286 i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~-s~~~~ 364 (400)
T COG3071 286 IEDALKRQWDPRLCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRP-SASDY 364 (400)
T ss_pred HHHHHHhccChhHHHHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCC-ChhhH
Confidence 2 233334444 567888889999999999999999999999999999887 77889
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh
Q 040440 296 LCQGIIYTLLRKKDEAEKQFEKFRRL 321 (355)
Q Consensus 296 ~~l~~~~~~~g~~~~A~~~~~~~l~~ 321 (355)
..+|.++.+.|+.++|.+.+++++..
T Consensus 365 ~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 365 AELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 99999999999999999999999864
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.68 E-value=6.9e-08 Score=79.79 Aligned_cols=95 Identities=20% Similarity=0.178 Sum_probs=84.0
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccC
Q 040440 152 LQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSD 231 (355)
Q Consensus 152 ~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 231 (355)
+...|.-|+++|+|++|+.+|.+++..+|.++..+.+.+..|+++.+|..|...++.++.++.....+|...+.+....|
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 56789999999999999999999999999999999999999999999999999999999999888899998888888888
Q ss_pred chHHHHHHHHHHHHHH
Q 040440 232 KKLNEVEKRIEKAMER 247 (355)
Q Consensus 232 ~~~~~a~~~~~~Al~~ 247 (355)
. ..+|.+.++.++++
T Consensus 180 ~-~~EAKkD~E~vL~L 194 (536)
T KOG4648|consen 180 N-NMEAKKDCETVLAL 194 (536)
T ss_pred h-HHHHHHhHHHHHhh
Confidence 7 55565556555543
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.68 E-value=3.7e-07 Score=69.83 Aligned_cols=103 Identities=22% Similarity=0.263 Sum_probs=84.2
Q ss_pred hhhccCCHHHHHHHHHHHHHcCCCC-----HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCC
Q 040440 124 SAREDVSYEEKEKEIEQHLAANPND-----IEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGE 198 (355)
Q Consensus 124 ~~~~~~~~~~A~~~~~~~l~~~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 198 (355)
..+..++|++|...|..+|+..|.. ...|.+.|.++++++.++.|++...++|+++|....++...+.+|.+...
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek 183 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEK 183 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhh
Confidence 3456668999999999999888764 34567788888899999999999999999999888888888999999999
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 040440 199 SEAAIKGFEEILRKDPLRVEAYHGLVMA 226 (355)
Q Consensus 199 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 226 (355)
|++|++.|+++++.+|....+....+.+
T Consensus 184 ~eealeDyKki~E~dPs~~ear~~i~rl 211 (271)
T KOG4234|consen 184 YEEALEDYKKILESDPSRREAREAIARL 211 (271)
T ss_pred HHHHHHHHHHHHHhCcchHHHHHHHHhc
Confidence 9999999999999988877665544443
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=98.66 E-value=5.7e-08 Score=65.07 Aligned_cols=68 Identities=21% Similarity=0.157 Sum_probs=57.2
Q ss_pred CchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC---C-C---ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 040440 255 SDLRDFKLLIAQIKVMESKHSEALRVYEELVKEE---P-R---DFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLV 322 (355)
Q Consensus 255 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~---~-~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 322 (355)
|+...++..+|.+|..+|++++|+.+|+++++.. + + -..++.++|.++..+|++++|++++++++++.
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~ 76 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIF 76 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 3446678999999999999999999999999652 2 1 25678999999999999999999999999863
|
... |
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=98.66 E-value=3.8e-08 Score=65.91 Aligned_cols=65 Identities=15% Similarity=0.149 Sum_probs=50.4
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHc---CC-C---chHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 040440 148 DIEALQTLMEVRIKSQKLVEAVDVIDRLIEL---EP-N---EFEWQLLKAQVQSYAGESEAAIKGFEEILRK 212 (355)
Q Consensus 148 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~~-~---~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 212 (355)
-..++..+|.+|...|++++|+.+|++++++ .+ + ...++..+|.++...|++++|++++++++++
T Consensus 4 ~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 4 TANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3567888899999999999999999988865 22 2 2346788888888889999998888888865
|
... |
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.2e-06 Score=70.96 Aligned_cols=104 Identities=16% Similarity=0.198 Sum_probs=71.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHH
Q 040440 186 QLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIA 265 (355)
Q Consensus 186 ~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la 265 (355)
.+..+.-++..|+|.+|...|...++.+|+.. .....+++||
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~--------------------------------------~~~nA~yWLG 185 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNST--------------------------------------YTPNAYYWLG 185 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCc--------------------------------------ccchhHHHHH
Confidence 56677777777888888888888887777643 1233445556
Q ss_pred HHHHHccCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChh
Q 040440 266 QIKVMESKHSEALRVYEELVKEEPRD---FRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHP 327 (355)
Q Consensus 266 ~~~~~~g~~~~A~~~~~~~l~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 327 (355)
.+++.+|+|+.|...|..+.+..|+. ++.++.+|.+...+|+.++|...|+++++..|+...
T Consensus 186 e~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~a 250 (262)
T COG1729 186 ESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTDA 250 (262)
T ss_pred HHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCHH
Confidence 66666666777777777777666543 466777777777777777777777777777776543
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.9e-07 Score=81.06 Aligned_cols=70 Identities=10% Similarity=0.071 Sum_probs=65.8
Q ss_pred cCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHH---HHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 040440 253 KKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRP---YLCQGIIYTLLRKKDEAEKQFEKFRRLV 322 (355)
Q Consensus 253 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 322 (355)
.+|++...++++|..|...|+|++|+..|+++++++|++..+ |+++|.+|..+|+.++|+.++++++++.
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels 142 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY 142 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 467889999999999999999999999999999999998854 9999999999999999999999999973
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.64 E-value=6e-07 Score=68.68 Aligned_cols=110 Identities=16% Similarity=0.103 Sum_probs=91.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHH
Q 040440 186 QLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIA 265 (355)
Q Consensus 186 ~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la 265 (355)
+-.-|.-++..|+|++|..-|..++..-|....- ... .++.+.|
T Consensus 98 lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e--~rs----------------------------------Ily~Nra 141 (271)
T KOG4234|consen 98 LKKEGNELFKNGDYEEANSKYQEALESCPSTSTE--ERS----------------------------------ILYSNRA 141 (271)
T ss_pred HHHHHHHhhhcccHHHHHHHHHHHHHhCccccHH--HHH----------------------------------HHHhhhH
Confidence 3455888999999999999999999988865441 112 2334457
Q ss_pred HHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHH
Q 040440 266 QIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHPYREY 331 (355)
Q Consensus 266 ~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~ 331 (355)
.+.++++.++.|+..+.++++++|.+..++...+.+|.++..+++|++.|++.++.+|.....+.-
T Consensus 142 aa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ear~~ 207 (271)
T KOG4234|consen 142 AALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRREAREA 207 (271)
T ss_pred HHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHH
Confidence 778899999999999999999999999999999999999999999999999999999987655443
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=98.64 E-value=4.4e-07 Score=68.60 Aligned_cols=105 Identities=25% Similarity=0.269 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHccCHHHHH
Q 040440 199 SEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSEAL 278 (355)
Q Consensus 199 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 278 (355)
|+.|++.++.....+|.+.+.++.-|.++..+.+ +...-+ ....+++|+
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAq--------fk~g~e-----------------------s~~miedAi 55 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQ--------FKQGPE-----------------------SKKMIEDAI 55 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH--------HS-HHH-----------------------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHh--------ccCcch-----------------------HHHHHHHHH
Confidence 5778888888888899999888888877765543 211100 112457788
Q ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHcCC-----------HHHHHHHHHHHHHhCCCChhHHHHHHH
Q 040440 279 RVYEELVKEEPRDFRPYLCQGIIYTLLRK-----------KDEAEKQFEKFRRLVPRNHPYREYFVD 334 (355)
Q Consensus 279 ~~~~~~l~~~~~~~~~~~~l~~~~~~~g~-----------~~~A~~~~~~~l~~~p~~~~~~~~~~~ 334 (355)
.-|++++.++|+..++++++|.+|..++. |++|..+|+++...+|++..|+.-+..
T Consensus 56 sK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~ 122 (186)
T PF06552_consen 56 SKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEM 122 (186)
T ss_dssp HHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHH
T ss_pred HHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 88888888888888888888888876653 788888899999999998777655443
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=98.61 E-value=3.2e-06 Score=70.66 Aligned_cols=190 Identities=14% Similarity=0.094 Sum_probs=146.6
Q ss_pred CHHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCC----Cch------HHHHHHHHHH
Q 040440 130 SYEEKEKEIEQHLAANPND------IEALQTLMEVRIKSQKLVEAVDVIDRLIELEP----NEF------EWQLLKAQVQ 193 (355)
Q Consensus 130 ~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~----~~~------~~~~~la~~~ 193 (355)
.++++++.|+.+++..-++ ..++..+|..+....|+++|+-+..++.++.. ++. .+++.++..+
T Consensus 137 ~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaVal 216 (518)
T KOG1941|consen 137 VFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVAL 216 (518)
T ss_pred HHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHH
Confidence 7899999999998754332 35678999999999999999999999987732 222 2467788889
Q ss_pred HHcCCHHHHHHHHHHHHhhC------CCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHH
Q 040440 194 SYAGESEAAIKGFEEILRKD------PLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQI 267 (355)
Q Consensus 194 ~~~g~~~~A~~~~~~~~~~~------p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~ 267 (355)
..+|+.-+|.++.+++.++. +-.......++.+|...|+ .+.+...|+.|........+.-....++...|.+
T Consensus 217 R~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd-~e~af~rYe~Am~~m~~~gdrmgqv~al~g~Akc 295 (518)
T KOG1941|consen 217 RLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGD-LERAFRRYEQAMGTMASLGDRMGQVEALDGAAKC 295 (518)
T ss_pred HHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhccc-HhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence 99999999999999998873 2234557788999999998 8889999999999888866666667777777777
Q ss_pred HHHccCHHH-----HHHHHHHHHHhCCC------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 040440 268 KVMESKHSE-----ALRVYEELVKEEPR------DFRPYLCQGIIYTLLRKKDEAEKQFEKFRR 320 (355)
Q Consensus 268 ~~~~g~~~~-----A~~~~~~~l~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 320 (355)
+....-..+ |++.-+++++.... -...+..++.+|..+|.-++-...+..+-+
T Consensus 296 ~~~~r~~~k~~~Crale~n~r~levA~~IG~K~~vlK~hcrla~iYrs~gl~d~~~~h~~ra~~ 359 (518)
T KOG1941|consen 296 LETLRLQNKICNCRALEFNTRLLEVASSIGAKLSVLKLHCRLASIYRSKGLQDELRAHVVRAHE 359 (518)
T ss_pred HHHHHHhhcccccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHH
Confidence 765544444 88888888775432 235678899999999888777777666543
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.61 E-value=3.8e-05 Score=59.91 Aligned_cols=166 Identities=14% Similarity=0.059 Sum_probs=115.5
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 040440 148 DIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAY 227 (355)
Q Consensus 148 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 227 (355)
....++..|..|-..|-+.-|.-.|.+++.+.|+.++++..+|..+...|+|+.|.+.|+..++++|.+.-+..+.|..+
T Consensus 64 RA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~ 143 (297)
T COG4785 64 RAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIAL 143 (297)
T ss_pred HHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceee
Confidence 45667788999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred hccCchHHHHHHHHHHHHHHHHh-hccCCchH--HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 040440 228 DGSDKKLNEVEKRIEKAMERCKK-EKKKSDLR--DFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTL 304 (355)
Q Consensus 228 ~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~--~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~ 304 (355)
.-.|+ +.-|.+-+.+ -..+|.++ .+|..+. ...-+..+|..-+.+-.+...+..+.|+..+..
T Consensus 144 YY~gR--------~~LAq~d~~~fYQ~D~~DPfR~LWLYl~---E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~y--- 209 (297)
T COG4785 144 YYGGR--------YKLAQDDLLAFYQDDPNDPFRSLWLYLN---EQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFY--- 209 (297)
T ss_pred eecCc--------hHhhHHHHHHHHhcCCCChHHHHHHHHH---HhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHH---
Confidence 88888 6666665555 23333333 2232222 234567777766655444333344444433322
Q ss_pred cCCHHHHHHHHHHHHHhCCCChhH
Q 040440 305 LRKKDEAEKQFEKFRRLVPRNHPY 328 (355)
Q Consensus 305 ~g~~~~A~~~~~~~l~~~p~~~~~ 328 (355)
+|+..+ ...++++..-..++..+
T Consensus 210 LgkiS~-e~l~~~~~a~a~~n~~~ 232 (297)
T COG4785 210 LGKISE-ETLMERLKADATDNTSL 232 (297)
T ss_pred HhhccH-HHHHHHHHhhccchHHH
Confidence 333221 23445555444444333
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=98.59 E-value=1e-06 Score=66.69 Aligned_cols=94 Identities=18% Similarity=0.228 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcc----------CHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCC--
Q 040440 131 YEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQ----------KLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGE-- 198 (355)
Q Consensus 131 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g----------~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-- 198 (355)
|+.|.+.++.....+|.+.+.++.-|.++..+. -+++|+.-|++++.++|+..++++.+|.+|...+.
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~ 86 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT 86 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence 688999999999999999999999888887653 35678888889999999999999999998877653
Q ss_pred ---------HHHHHHHHHHHHhhCCCCHHHHHHHH
Q 040440 199 ---------SEAAIKGFEEILRKDPLRVEAYHGLV 224 (355)
Q Consensus 199 ---------~~~A~~~~~~~~~~~p~~~~~~~~l~ 224 (355)
|++|.++|+++...+|++......|.
T Consensus 87 ~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe 121 (186)
T PF06552_consen 87 PDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLE 121 (186)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 77888899999999999876554443
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.3e-05 Score=77.69 Aligned_cols=176 Identities=13% Similarity=0.085 Sum_probs=138.6
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 040440 135 EKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDP 214 (355)
Q Consensus 135 ~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p 214 (355)
.+.|+++.+.. +-..++..|..+|...+++++|.++++.+++...+....|..++..+.++++-+.|...++++++.-|
T Consensus 1517 ~kVFeRAcqyc-d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lP 1595 (1710)
T KOG1070|consen 1517 KKVFERACQYC-DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLP 1595 (1710)
T ss_pred HHHHHHHHHhc-chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcc
Confidence 34444444422 22345677888889999999999999999999888888999999999999999999999999999998
Q ss_pred C--CHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--C
Q 040440 215 L--RVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEE--P 289 (355)
Q Consensus 215 ~--~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~--~ 289 (355)
. +.+.....+++.++.|+ .+++..+|+. +...|...++|..+.+.-.+.|+.+.+..+|++++.+. +
T Consensus 1596 k~eHv~~IskfAqLEFk~GD--------aeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1596 KQEHVEFISKFAQLEFKYGD--------AERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred hhhhHHHHHHHHHHHhhcCC--------chhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 7 77888889999999999 8888889988 67789999999999999999999999999999998764 4
Q ss_pred CChHHHHHHHHHHHH-cCCHHHHHHHHHHHH
Q 040440 290 RDFRPYLCQGIIYTL-LRKKDEAEKQFEKFR 319 (355)
Q Consensus 290 ~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~l 319 (355)
.....++..-.-|.+ .|+-+.....=.+|.
T Consensus 1668 kkmKfffKkwLeyEk~~Gde~~vE~VKarA~ 1698 (1710)
T KOG1070|consen 1668 KKMKFFFKKWLEYEKSHGDEKNVEYVKARAK 1698 (1710)
T ss_pred hHhHHHHHHHHHHHHhcCchhhHHHHHHHHH
Confidence 444444444444443 355444333333333
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.53 E-value=6e-06 Score=68.42 Aligned_cols=152 Identities=14% Similarity=0.092 Sum_probs=128.4
Q ss_pred hccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHc-CCCc---hHHHHHHHHHHHHcCCHHH
Q 040440 126 REDVSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIEL-EPNE---FEWQLLKAQVQSYAGESEA 201 (355)
Q Consensus 126 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~~~~---~~~~~~la~~~~~~g~~~~ 201 (355)
..+++..+|....++.++..|.+.-++..--..++.+|+.+.-...+++++-. +++. ....-+++..+...|-|++
T Consensus 114 ~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred hccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 66678889999999999999999999999999999999999999999999877 5554 3345567788899999999
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHH-----HHHHHHHHHHccCHHH
Q 040440 202 AIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDF-----KLLIAQIKVMESKHSE 276 (355)
Q Consensus 202 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~-----~~~la~~~~~~g~~~~ 276 (355)
|.+..++++++++.+.-+...++.++...++ ++++.++..+....-..... |...|.+++..+.|+.
T Consensus 194 AEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r--------~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~ 265 (491)
T KOG2610|consen 194 AEKQADRALQINRFDCWASHAKAHVLEMNGR--------HKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEK 265 (491)
T ss_pred HHHHHHhhccCCCcchHHHHHHHHHHHhcch--------hhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhH
Confidence 9999999999999999999999999999999 89999888874333222221 4556888899999999
Q ss_pred HHHHHHHHH
Q 040440 277 ALRVYEELV 285 (355)
Q Consensus 277 A~~~~~~~l 285 (355)
|+++|++-+
T Consensus 266 aleIyD~ei 274 (491)
T KOG2610|consen 266 ALEIYDREI 274 (491)
T ss_pred HHHHHHHHH
Confidence 999998755
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=98.53 E-value=6.9e-06 Score=69.44 Aligned_cols=133 Identities=14% Similarity=0.077 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhc
Q 040440 151 ALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSY-AGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDG 229 (355)
Q Consensus 151 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 229 (355)
+|..+.....+.+..+.|..+|.++.+..+....+|...|.+.+. .++.+.|.++|+.+++..|.+...|......+..
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~ 82 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK 82 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 566777777777778888888888886555567778888887666 4566668888888888888888888877777777
Q ss_pred cCchHHHHHHHHHHHHHHHHh-hccCCc---hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Q 040440 230 SDKKLNEVEKRIEKAMERCKK-EKKKSD---LRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRD 291 (355)
Q Consensus 230 ~~~~~~~a~~~~~~Al~~~~~-~~~~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~ 291 (355)
.++ .+.+..++++ ....+. ...+|......-.+.|+.+...++.+++.+..|.+
T Consensus 83 ~~d--------~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~ 140 (280)
T PF05843_consen 83 LND--------INNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPED 140 (280)
T ss_dssp TT---------HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS
T ss_pred hCc--------HHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhh
Confidence 776 5666666665 222222 23466666777777777777777777777776653
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.53 E-value=9.1e-06 Score=57.82 Aligned_cols=84 Identities=17% Similarity=0.174 Sum_probs=43.4
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCch----HHHHHHHHHHHHcCCHHHHHHH
Q 040440 130 SYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEF----EWQLLKAQVQSYAGESEAAIKG 205 (355)
Q Consensus 130 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~la~~~~~~g~~~~A~~~ 205 (355)
+++.|++.|.+++..-|..+.+|++.+..+.-.|+.++|++-+++++++..... .++...|.+|...|+-+.|...
T Consensus 58 ~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~dd~AR~D 137 (175)
T KOG4555|consen 58 DLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGNDDAARAD 137 (175)
T ss_pred chHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCchHHHHHh
Confidence 555555555555555555555555555555555555555555555555432221 1344555555555555555555
Q ss_pred HHHHHhhC
Q 040440 206 FEEILRKD 213 (355)
Q Consensus 206 ~~~~~~~~ 213 (355)
|+.+-++.
T Consensus 138 Fe~AA~LG 145 (175)
T KOG4555|consen 138 FEAAAQLG 145 (175)
T ss_pred HHHHHHhC
Confidence 55555443
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.51 E-value=2.9e-06 Score=60.28 Aligned_cols=97 Identities=15% Similarity=0.138 Sum_probs=84.7
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH----HHHHHHHHHH
Q 040440 152 LQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRV----EAYHGLVMAY 227 (355)
Q Consensus 152 ~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~----~~~~~l~~~~ 227 (355)
+...|......|+.+.|++.|.+++.+.|..+.+|.+.+..+.-+|+.++|++.+++++++..+.. .++...|.+|
T Consensus 46 LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~ly 125 (175)
T KOG4555|consen 46 LELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLY 125 (175)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHH
Confidence 456677888999999999999999999999999999999999999999999999999999965433 3477889999
Q ss_pred hccCchHHHHHHHHHHHHHHHH
Q 040440 228 DGSDKKLNEVEKRIEKAMERCK 249 (355)
Q Consensus 228 ~~~~~~~~~a~~~~~~Al~~~~ 249 (355)
...|+ .+.+...|+.|-++-.
T Consensus 126 Rl~g~-dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 126 RLLGN-DDAARADFEAAAQLGS 146 (175)
T ss_pred HHhCc-hHHHHHhHHHHHHhCC
Confidence 99988 8888888998877643
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.7e-05 Score=67.11 Aligned_cols=103 Identities=10% Similarity=0.055 Sum_probs=63.1
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHH
Q 040440 130 SYEEKEKEIEQHLAANPNDIEALQTLMEVRIK-SQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEE 208 (355)
Q Consensus 130 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 208 (355)
..+.|..+|.++++..+....+|...|.+.+. .++.+.|..+|+.+++..|.+...|......+...|+.+.|+.+|++
T Consensus 16 g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer 95 (280)
T PF05843_consen 16 GIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKLNDINNARALFER 95 (280)
T ss_dssp HHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred ChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence 46667777777765555556666666666555 44555577777777777777777776666667777777777777777
Q ss_pred HHhhCCCCH---HHHHHHHHHHhccCc
Q 040440 209 ILRKDPLRV---EAYHGLVMAYDGSDK 232 (355)
Q Consensus 209 ~~~~~p~~~---~~~~~l~~~~~~~~~ 232 (355)
++..-+... ..|......-...|+
T Consensus 96 ~i~~l~~~~~~~~iw~~~i~fE~~~Gd 122 (280)
T PF05843_consen 96 AISSLPKEKQSKKIWKKFIEFESKYGD 122 (280)
T ss_dssp HCCTSSCHHHCHHHHHHHHHHHHHHS-
T ss_pred HHHhcCchhHHHHHHHHHHHHHHHcCC
Confidence 776654433 455555555555555
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.48 E-value=6.2e-05 Score=59.77 Aligned_cols=206 Identities=15% Similarity=0.100 Sum_probs=126.5
Q ss_pred cccccchhhhhhhhhhhccC-CHHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHc----
Q 040440 110 ATVESTNESTKDTTSAREDV-SYEEKEKEIEQHLAANPND------IEALQTLMEVRIKSQKLVEAVDVIDRLIEL---- 178 (355)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---- 178 (355)
|.+..+..........|... +|++|...+.++.+-..++ ..++...+........+.++..+++++..+
T Consensus 25 ad~dgaas~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~ 104 (308)
T KOG1585|consen 25 ADWDGAASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVEC 104 (308)
T ss_pred CCchhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 33333333333333345555 8899998888888644333 345556677777888899999999998776
Q ss_pred -CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH------HHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhh
Q 040440 179 -EPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRV------EAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKE 251 (355)
Q Consensus 179 -~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~------~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~ 251 (355)
.|+....-...+--.....+.++|+.+|++++.+..++. +.+...++++.+... +.++...+.+-..+..+.
T Consensus 105 GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~k-f~Eaa~a~lKe~~~~~~~ 183 (308)
T KOG1585|consen 105 GSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEK-FTEAATAFLKEGVAADKC 183 (308)
T ss_pred CCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHH-hhHHHHHHHHhhhHHHHH
Confidence 333333344445556677889999999999888744322 334455666666665 222222222222222233
Q ss_pred ccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC----CCChHHHHHHHHHHHHcCCHHHHHHHHHH
Q 040440 252 KKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEE----PRDFRPYLCQGIIYTLLRKKDEAEKQFEK 317 (355)
Q Consensus 252 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 317 (355)
...+.....+.....+|.-..+|..|..+++..-+.. +++..+..+|-..| ..|+.++....+..
T Consensus 184 ~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl~s 252 (308)
T KOG1585|consen 184 DAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVLSS 252 (308)
T ss_pred hhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHHcC
Confidence 3444445556666667777789999999998876543 44556666666555 56777777766543
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.45 E-value=0.00029 Score=63.65 Aligned_cols=129 Identities=13% Similarity=0.088 Sum_probs=65.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh---hccCCchHHHHH
Q 040440 186 QLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK---EKKKSDLRDFKL 262 (355)
Q Consensus 186 ~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~---~~~~~~~~~~~~ 262 (355)
|..++......|-++.....|++++.+.--.+....+.+..+.... +++++.+.+++ +-..|...++|.
T Consensus 480 Ws~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~--------yfeesFk~YErgI~LFk~p~v~diW~ 551 (835)
T KOG2047|consen 480 WSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHK--------YFEESFKAYERGISLFKWPNVYDIWN 551 (835)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhH--------HHHHHHHHHHcCCccCCCccHHHHHH
Confidence 3444444444444444444444444444444444444444333332 35555555555 223344445544
Q ss_pred HHHHHHH---HccCHHHHHHHHHHHHHhCCCC--hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 040440 263 LIAQIKV---MESKHSEALRVYEELVKEEPRD--FRPYLCQGIIYTLLRKKDEAEKQFEKFRRLV 322 (355)
Q Consensus 263 ~la~~~~---~~g~~~~A~~~~~~~l~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 322 (355)
..-.... .....+.|...|+++++..|.. -.++...+..-.+.|--..|+..|+++-..-
T Consensus 552 tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v 616 (835)
T KOG2047|consen 552 TYLTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAV 616 (835)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcC
Confidence 4333222 2345677777777777766632 2345555666666676677777777665443
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.43 E-value=6.3e-05 Score=67.72 Aligned_cols=170 Identities=12% Similarity=0.128 Sum_probs=105.7
Q ss_pred HcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHc-CCCc-----hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-
Q 040440 143 AANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIEL-EPNE-----FEWQLLKAQVQSYAGESEAAIKGFEEILRKDPL- 215 (355)
Q Consensus 143 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~~~~-----~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~- 215 (355)
..+|+++.-|..... +..|+..+-+..|.++++. +|.. ...|..+|..|...|+.+.|...|+++.+..-.
T Consensus 343 RQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~ 420 (835)
T KOG2047|consen 343 RQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKT 420 (835)
T ss_pred hcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccc
Confidence 456777777766544 4567888888888888764 4432 246888888888888888888888888876422
Q ss_pred ---CHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCC-------------------chHHHHHHHHHHHHHccC
Q 040440 216 ---RVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKS-------------------DLRDFKLLIAQIKVMESK 273 (355)
Q Consensus 216 ---~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~-------------------~~~~~~~~la~~~~~~g~ 273 (355)
-..+|...|..-.+..+ ++.|+.+.+...-.| ....+|..+++.....|-
T Consensus 421 v~dLa~vw~~waemElrh~~--------~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gt 492 (835)
T KOG2047|consen 421 VEDLAEVWCAWAEMELRHEN--------FEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGT 492 (835)
T ss_pred hHHHHHHHHHHHHHHHhhhh--------HHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhcc
Confidence 23455555555444444 555555554411111 122345556666666667
Q ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 040440 274 HSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLV 322 (355)
Q Consensus 274 ~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 322 (355)
++....+|++++++.--.+.+..+.|..+....-++++.+.|++.+.+.
T Consensus 493 festk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LF 541 (835)
T KOG2047|consen 493 FESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLF 541 (835)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccC
Confidence 7777777777766655556666666666666666666666666666554
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.41 E-value=0.00014 Score=57.82 Aligned_cols=172 Identities=10% Similarity=0.035 Sum_probs=124.0
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchH------HHHHHHHHHHHcCCHHHHHHHHHHHHhhC-----CCCHH
Q 040440 150 EALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFE------WQLLKAQVQSYAGESEAAIKGFEEILRKD-----PLRVE 218 (355)
Q Consensus 150 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~------~~~~la~~~~~~g~~~~A~~~~~~~~~~~-----p~~~~ 218 (355)
..|..-+.+|...+++++|...+.++++-..++.. .+-..+.+......+.++..+|+++.... |+...
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAA 111 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAA 111 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHH
Confidence 44556677888899999999999999976554433 24445666777889999999999998874 33322
Q ss_pred HHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHH------hCCCCh
Q 040440 219 AYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVK------EEPRDF 292 (355)
Q Consensus 219 ~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~------~~~~~~ 292 (355)
.-...+.-.....+ .+.|++.|.+++.++++........+.+-..++++.+...+++|-..+.+-.. ..+.-.
T Consensus 112 maleKAak~lenv~-Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~ 190 (308)
T KOG1585|consen 112 MALEKAAKALENVK-PDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQC 190 (308)
T ss_pred HHHHHHHHHhhcCC-HHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHH
Confidence 22222222223323 77888889999999888666666777888889999999999999887776532 223334
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 040440 293 RPYLCQGIIYTLLRKKDEAEKQFEKFRRLV 322 (355)
Q Consensus 293 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 322 (355)
..+.....+|....+|..|..+++...++.
T Consensus 191 k~~va~ilv~L~~~Dyv~aekc~r~~~qip 220 (308)
T KOG1585|consen 191 KAYVAAILVYLYAHDYVQAEKCYRDCSQIP 220 (308)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHhcchhcCc
Confidence 556677777788889999999999877653
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.35 E-value=1.6e-06 Score=50.54 Aligned_cols=40 Identities=25% Similarity=0.233 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 040440 185 WQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLV 224 (355)
Q Consensus 185 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 224 (355)
++..+|..|...|++++|++.|+++++.+|+++.++..++
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La 42 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence 4445555555555555555555555555555555555444
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.35 E-value=0.00012 Score=60.19 Aligned_cols=237 Identities=15% Similarity=0.139 Sum_probs=134.4
Q ss_pred CcccccCCCCCCccchHHHHHHHHHHHHhccccccc-c---Ccccc--cccccccccccchhhhhhhhhhhccCCHHHHH
Q 040440 62 PSLLRTLTPLSSPLIKITSVTVAAAALLFMRLPFHS-I---KPAIA--APVAAAATVESTNESTKDTTSAREDVSYEEKE 135 (355)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~a~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 135 (355)
|.+..--.|++.|....+.++.-...-+-|++.... . .+.++ .++..-|++.-....-.- ..+.....+..+
T Consensus 45 PVlV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~~p~vAaqfgiqsIPtV~af~dGqpV--dgF~G~qPesql 122 (304)
T COG3118 45 PVLVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAEPMVAAQFGVQSIPTVYAFKDGQPV--DGFQGAQPESQL 122 (304)
T ss_pred CeEEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCCcchhHHHHhCcCcCCeEEEeeCCcCc--cccCCCCcHHHH
Confidence 444444456666765555555555544444433210 0 12222 244444433222211000 002222444333
Q ss_pred -HHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 040440 136 -KEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDP 214 (355)
Q Consensus 136 -~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p 214 (355)
+.+++.+. ...+.-...+.-....|++.+|...|..++...|++..+...++.+|...|+.+.|...+...-....
T Consensus 123 r~~ld~~~~---~~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~ 199 (304)
T COG3118 123 RQFLDKVLP---AEEEEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQ 199 (304)
T ss_pred HHHHHHhcC---hHHHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccch
Confidence 33343333 23445566677788999999999999999999999999999999999999999999888766443322
Q ss_pred CCHHHH-HHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC--CC
Q 040440 215 LRVEAY-HGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEP--RD 291 (355)
Q Consensus 215 ~~~~~~-~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~--~~ 291 (355)
+....- ......+.+... ..+...+-.+...+|++....+.+|..|...|+++.|.+.+-..++.+- .+
T Consensus 200 ~~~~~~l~a~i~ll~qaa~--------~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d 271 (304)
T COG3118 200 DKAAHGLQAQIELLEQAAA--------TPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFED 271 (304)
T ss_pred hhHHHHHHHHHHHHHHHhc--------CCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccC
Confidence 211111 011122222221 2222333333556788888888888888888888888888877776644 34
Q ss_pred hHHHHHHHHHHHHcCCHHHH
Q 040440 292 FRPYLCQGIIYTLLRKKDEA 311 (355)
Q Consensus 292 ~~~~~~l~~~~~~~g~~~~A 311 (355)
..+...+-.++...|..+.+
T Consensus 272 ~~~Rk~lle~f~~~g~~Dp~ 291 (304)
T COG3118 272 GEARKTLLELFEAFGPADPL 291 (304)
T ss_pred cHHHHHHHHHHHhcCCCCHH
Confidence 55555566666555544333
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.34 E-value=1.6e-06 Score=50.55 Aligned_cols=42 Identities=17% Similarity=0.115 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 040440 259 DFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGI 300 (355)
Q Consensus 259 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~ 300 (355)
.++..+|..|...|++++|++.|+++++.+|++..+|..+|.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 456777888888888888888888888888888888877764
|
|
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=98.33 E-value=0.00021 Score=61.74 Aligned_cols=154 Identities=18% Similarity=0.231 Sum_probs=120.8
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHccC------------HHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHH
Q 040440 135 EKEIEQHLAANPNDIEALQTLMEVRIKSQK------------LVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAA 202 (355)
Q Consensus 135 ~~~~~~~l~~~p~~~~~~~~la~~~~~~g~------------~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 202 (355)
...+++.+..+|.|+++|..++...-..-. .+.-+.+|++|++.+|++...+..+-.+..+..+.++.
T Consensus 5 ~~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l 84 (321)
T PF08424_consen 5 TAELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKL 84 (321)
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 456788899999999999998876544322 56778899999999999999888888888899999999
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHHHHhhccCC------------chHHHHHHHHHHH
Q 040440 203 IKGFEEILRKDPLRVEAYHGLVMAYDGS--DKKLNEVEKRIEKAMERCKKEKKKS------------DLRDFKLLIAQIK 268 (355)
Q Consensus 203 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~--~~~~~~a~~~~~~Al~~~~~~~~~~------------~~~~~~~~la~~~ 268 (355)
.+.+++++..+|++...|..+....... +-.+......|.+++..+....... ....+...+....
T Consensus 85 ~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl 164 (321)
T PF08424_consen 85 AKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFL 164 (321)
T ss_pred HHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHH
Confidence 9999999999999999998776665442 2237788888999999888732221 2233455666777
Q ss_pred HHccCHHHHHHHHHHHHHhC
Q 040440 269 VMESKHSEALRVYEELVKEE 288 (355)
Q Consensus 269 ~~~g~~~~A~~~~~~~l~~~ 288 (355)
...|..+.|+..++-.++.+
T Consensus 165 ~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 165 RQAGYTERAVALWQALLEFN 184 (321)
T ss_pred HHCCchHHHHHHHHHHHHHH
Confidence 78899999999998888764
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.31 E-value=0.00066 Score=57.84 Aligned_cols=114 Identities=18% Similarity=0.054 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHccCHHHHH
Q 040440 199 SEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSEAL 278 (355)
Q Consensus 199 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 278 (355)
...|...-.++.++.|+....-..-+..+.+.|+ ..|+-.+++..-+....+.+ +..|....--+.++
T Consensus 245 p~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~--------~rKg~~ilE~aWK~ePHP~i----a~lY~~ar~gdta~ 312 (531)
T COG3898 245 PASARDDALEANKLAPDLVPAAVVAARALFRDGN--------LRKGSKILETAWKAEPHPDI----ALLYVRARSGDTAL 312 (531)
T ss_pred hHHHHHHHHHHhhcCCccchHHHHHHHHHHhccc--------hhhhhhHHHHHHhcCCChHH----HHHHHHhcCCCcHH
Confidence 3444444455566677777777777777777777 55555555542111111222 22222222222233
Q ss_pred HHHHH---HHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 040440 279 RVYEE---LVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPR 324 (355)
Q Consensus 279 ~~~~~---~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~ 324 (355)
.-+++ +..+.|++.+.....+......|++..|..--+.+....|.
T Consensus 313 dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pr 361 (531)
T COG3898 313 DRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPR 361 (531)
T ss_pred HHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCch
Confidence 22222 22344455555555555555555555555555555555544
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.30 E-value=0.00016 Score=58.26 Aligned_cols=133 Identities=14% Similarity=0.139 Sum_probs=110.2
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC------CCCHHHHHHH
Q 040440 151 ALQTLMEVRIKSQKLVEAVDVIDRLIELE-PNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKD------PLRVEAYHGL 223 (355)
Q Consensus 151 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~------p~~~~~~~~l 223 (355)
+.+.+..++.-.|+|.-.+..+.++++.+ |.++.....+|.+..+.||.+.|..+|+++-+.. ..+..+..+.
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 45677888889999999999999999998 5677788899999999999999999999665432 2234456677
Q ss_pred HHHHhccCchHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Q 040440 224 VMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRD 291 (355)
Q Consensus 224 ~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~ 291 (355)
+.++...++ +-.|...+.+ ...++.++.+..+.|.|....|+..+|++..+.++...|..
T Consensus 259 a~i~lg~nn--------~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 259 AFLHLGQNN--------FAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred hhheecccc--------hHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 777777777 7777777766 56678888888899999999999999999999999999864
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.30 E-value=0.00068 Score=57.77 Aligned_cols=205 Identities=17% Similarity=0.085 Sum_probs=131.7
Q ss_pred cccchhhhhhhhhhhccCCHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHH
Q 040440 112 VESTNESTKDTTSAREDVSYEEKEKEIEQHLAANPND-IEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKA 190 (355)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la 190 (355)
....++.+.+...+.-.+++++|.+.|+.++. +|+. .-.+..+-.--...|+.+.|+.+-+++....|.-..++...-
T Consensus 117 DqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtL 195 (531)
T COG3898 117 DQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATL 195 (531)
T ss_pred cchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHH
Confidence 44455555555455556699999999998876 3332 222233333334789999999999999999998888777777
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhC---CCCHH---HHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hccCCchHHHHHH
Q 040440 191 QVQSYAGESEAAIKGFEEILRKD---PLRVE---AYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLL 263 (355)
Q Consensus 191 ~~~~~~g~~~~A~~~~~~~~~~~---p~~~~---~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~ 263 (355)
...+..|+++.|+++.+...... ++-.+ +...-+......+- +...|.....+ .+..++....-..
T Consensus 196 e~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~lda-------dp~~Ar~~A~~a~KL~pdlvPaav~ 268 (531)
T COG3898 196 EARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDA-------DPASARDDALEANKLAPDLVPAAVV 268 (531)
T ss_pred HHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcC-------ChHHHHHHHHHHhhcCCccchHHHH
Confidence 77889999999999987766542 22111 11111111111111 13444444444 4557777788888
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHH---HHhCCCChhHH
Q 040440 264 IAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKF---RRLVPRNHPYR 329 (355)
Q Consensus 264 la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---l~~~p~~~~~~ 329 (355)
-+..+++.|+..++-.+++.+.+..| ++.++ +..++.+.|+. ++.-++++ ..+.|++....
T Consensus 269 AAralf~d~~~rKg~~ilE~aWK~eP-HP~ia--~lY~~ar~gdt--a~dRlkRa~~L~slk~nnaes~ 332 (531)
T COG3898 269 AARALFRDGNLRKGSKILETAWKAEP-HPDIA--LLYVRARSGDT--ALDRLKRAKKLESLKPNNAESS 332 (531)
T ss_pred HHHHHHhccchhhhhhHHHHHHhcCC-ChHHH--HHHHHhcCCCc--HHHHHHHHHHHHhcCccchHHH
Confidence 89999999999999999999999988 45443 23344455554 44444444 44678775443
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=98.30 E-value=0.00011 Score=64.63 Aligned_cols=161 Identities=17% Similarity=0.147 Sum_probs=112.9
Q ss_pred hhccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC---------------------c-
Q 040440 125 AREDVSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPN---------------------E- 182 (355)
Q Consensus 125 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~---------------------~- 182 (355)
+....+.+.-++...++++.+|+.+++|..++.- ......+|.++|+++++.... +
T Consensus 178 AWRERnp~aRIkaA~eALei~pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt 255 (539)
T PF04184_consen 178 AWRERNPQARIKAAKEALEINPDCADAYILLAEE--EASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDT 255 (539)
T ss_pred HHhcCCHHHHHHHHHHHHHhhhhhhHHHhhcccc--cccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhcccc
Confidence 3555689999999999999999999999988763 233456777777776654100 0
Q ss_pred ---hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhcc--CC
Q 040440 183 ---FEWQLLKAQVQSYAGESEAAIKGFEEILRKDPL--RVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKK--KS 255 (355)
Q Consensus 183 ---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~--~~ 255 (355)
..+...+|.|..+.|+.++|++.++++++.+|. +..+..++..++...+. |.++..++.+-.+ .|
T Consensus 256 ~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~--------Yad~q~lL~kYdDi~lp 327 (539)
T PF04184_consen 256 NVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQA--------YADVQALLAKYDDISLP 327 (539)
T ss_pred chhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCC--------HHHHHHHHHHhccccCC
Confidence 123566889999999999999999999988764 55678899999999988 7777777777332 23
Q ss_pred chHHHHHHHHHHHHH-ccC---------------HHHHHHHHHHHHHhCCCChHHH
Q 040440 256 DLRDFKLLIAQIKVM-ESK---------------HSEALRVYEELVKEEPRDFRPY 295 (355)
Q Consensus 256 ~~~~~~~~la~~~~~-~g~---------------~~~A~~~~~~~l~~~~~~~~~~ 295 (355)
....+.+.-|.+-.+ .++ -..|++.+.++++.+|.-+..+
T Consensus 328 kSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YL 383 (539)
T PF04184_consen 328 KSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYL 383 (539)
T ss_pred chHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhh
Confidence 444444444433222 111 2346788889998888655443
|
The molecular function of this protein is uncertain. |
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.29 E-value=0.00018 Score=56.79 Aligned_cols=150 Identities=19% Similarity=0.152 Sum_probs=101.4
Q ss_pred HccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC----C--CCHHHHHHHHHHHhccCchH
Q 040440 161 KSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKD----P--LRVEAYHGLVMAYDGSDKKL 234 (355)
Q Consensus 161 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~----p--~~~~~~~~l~~~~~~~~~~~ 234 (355)
-.+++++|.++|.++-.. |....++..|-..|.++-+.. . +-...|...+.+|.+. + .
T Consensus 26 g~~k~eeAadl~~~Aan~--------------yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cykk~-~-~ 89 (288)
T KOG1586|consen 26 GSNKYEEAAELYERAANM--------------YKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYKKV-D-P 89 (288)
T ss_pred CCcchHHHHHHHHHHHHH--------------HHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcc-C-h
Confidence 446889999999887532 233333334444444333321 1 1223344445555444 3 6
Q ss_pred HHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHhCCCC------hHHHHHHHHHHHHcCC
Q 040440 235 NEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVME-SKHSEALRVYEELVKEEPRD------FRPYLCQGIIYTLLRK 307 (355)
Q Consensus 235 ~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~~l~~~~~~------~~~~~~l~~~~~~~g~ 307 (355)
++|..-+++|++++........-...+..+|.+|... .++++|+.+|+++-+....+ -..+...+......|+
T Consensus 90 ~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leq 169 (288)
T KOG1586|consen 90 EEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQ 169 (288)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHH
Confidence 7777778888888888666666677788899999865 89999999999998765432 2346667777889999
Q ss_pred HHHHHHHHHHHHHhCCCCh
Q 040440 308 KDEAEKQFEKFRRLVPRNH 326 (355)
Q Consensus 308 ~~~A~~~~~~~l~~~p~~~ 326 (355)
|.+|+..|++.....-++.
T Consensus 170 Y~~Ai~iyeqva~~s~~n~ 188 (288)
T KOG1586|consen 170 YSKAIDIYEQVARSSLDNN 188 (288)
T ss_pred HHHHHHHHHHHHHHhccch
Confidence 9999999999887655553
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=98.28 E-value=0.00055 Score=59.24 Aligned_cols=180 Identities=14% Similarity=0.085 Sum_probs=126.9
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHc----CCCchHHHHHHHHHHHH---cCCHHHHHHHHHHHH-hhCCCCHHH
Q 040440 148 DIEALQTLMEVRIKSQKLVEAVDVIDRLIEL----EPNEFEWQLLKAQVQSY---AGESEAAIKGFEEIL-RKDPLRVEA 219 (355)
Q Consensus 148 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~la~~~~~---~g~~~~A~~~~~~~~-~~~p~~~~~ 219 (355)
+++....+-..|....+|+.-+++.+.+-.. .++...+.+.+|.++.+ .|+.++|+..+..++ ...+.+++.
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~ 219 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDT 219 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHH
Confidence 4566778888899999999999999988766 44566778889999998 999999999999944 456778999
Q ss_pred HHHHHHHHhccCch-HHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHH--------H----
Q 040440 220 YHGLVMAYDGSDKK-LNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELV--------K---- 286 (355)
Q Consensus 220 ~~~l~~~~~~~~~~-~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l--------~---- 286 (355)
+..+|.+|...-.. ...-...+++|++.|.+.-....+...-.+++.++...|.-.+.....++.. +
T Consensus 220 ~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~ 299 (374)
T PF13281_consen 220 LGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSL 299 (374)
T ss_pred HHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccc
Confidence 99999998654211 0012344888888888832222333344555666666665333322222221 1
Q ss_pred hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChh
Q 040440 287 EEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHP 327 (355)
Q Consensus 287 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 327 (355)
....+.+.+-.++.+..-.|++++|.+.+++++++.|..-.
T Consensus 300 ~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W~ 340 (374)
T PF13281_consen 300 EKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAWE 340 (374)
T ss_pred cccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcchh
Confidence 12245677778889999999999999999999999886533
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=98.27 E-value=0.00013 Score=64.18 Aligned_cols=167 Identities=12% Similarity=0.139 Sum_probs=113.5
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCch
Q 040440 154 TLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKK 233 (355)
Q Consensus 154 ~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 233 (355)
.+....++..+.+.-++...++++++|+..++|..++.- ...-..+|.++|+++++....... ........|.
T Consensus 173 ~IMq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~~lg----~s~~~~~~g~- 245 (539)
T PF04184_consen 173 EIMQKAWRERNPQARIKAAKEALEINPDCADAYILLAEE--EASTIVEAEELLRQAVKAGEASLG----KSQFLQHHGH- 245 (539)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhcccc--cccCHHHHHHHHHHHHHHHHHhhc----hhhhhhcccc-
Confidence 344455677888889999999999999999999888762 344578899999999886432211 1111111111
Q ss_pred HHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--ChHHHHHHHHHHHHcCCHHHH
Q 040440 234 LNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPR--DFRPYLCQGIIYTLLRKKDEA 311 (355)
Q Consensus 234 ~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~--~~~~~~~l~~~~~~~g~~~~A 311 (355)
.-+.. . .........+...+|.+..+.|+.++|++.++++++..|. +..++.++..++..++.|.++
T Consensus 246 -------~~e~~---~-~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~ 314 (539)
T PF04184_consen 246 -------FWEAW---H-RRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADV 314 (539)
T ss_pred -------hhhhh---h-ccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHH
Confidence 11110 0 0111222445677899999999999999999999988774 467899999999999999999
Q ss_pred HHHHHHHHHhC-CCChhHHHHHHHHHHHHH
Q 040440 312 EKQFEKFRRLV-PRNHPYREYFVDNMVATK 340 (355)
Q Consensus 312 ~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~ 340 (355)
...+.+.-++. |+. ....+...++..+
T Consensus 315 q~lL~kYdDi~lpkS--Ati~YTaALLkaR 342 (539)
T PF04184_consen 315 QALLAKYDDISLPKS--ATICYTAALLKAR 342 (539)
T ss_pred HHHHHHhccccCCch--HHHHHHHHHHHHH
Confidence 99999875442 333 3334445555444
|
The molecular function of this protein is uncertain. |
| >KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.26 E-value=8e-05 Score=59.19 Aligned_cols=68 Identities=18% Similarity=0.256 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 040440 258 RDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRN 325 (355)
Q Consensus 258 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~ 325 (355)
..++.++++|+...|+|-++++....++..+|.+..+++..|.+....=+..+|...|.++++++|.-
T Consensus 230 tpLllNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpsl 297 (329)
T KOG0545|consen 230 TPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSL 297 (329)
T ss_pred hHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhh
Confidence 34678899999999999999999999999999999999999999999999999999999999999975
|
|
| >KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.23 E-value=2.6e-06 Score=74.00 Aligned_cols=103 Identities=16% Similarity=0.153 Sum_probs=96.0
Q ss_pred hhccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHH
Q 040440 125 AREDVSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIK 204 (355)
Q Consensus 125 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 204 (355)
.....+|+.|+..|.++|+.+|+++..+...+..+++.+++..|+.-+.++++.+|....+|+..|......+++.+|+.
T Consensus 14 ~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~~ 93 (476)
T KOG0376|consen 14 ALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKALL 93 (476)
T ss_pred hcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHHH
Confidence 34455999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHH
Q 040440 205 GFEEILRKDPLRVEAYHGLVMAY 227 (355)
Q Consensus 205 ~~~~~~~~~p~~~~~~~~l~~~~ 227 (355)
.|++.....|+++.+...+..|-
T Consensus 94 ~l~~~~~l~Pnd~~~~r~~~Ec~ 116 (476)
T KOG0376|consen 94 DLEKVKKLAPNDPDATRKIDECN 116 (476)
T ss_pred HHHHhhhcCcCcHHHHHHHHHHH
Confidence 99999999999999887766664
|
|
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.22 E-value=8.6e-06 Score=64.27 Aligned_cols=83 Identities=14% Similarity=0.146 Sum_probs=80.6
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 040440 130 SYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEI 209 (355)
Q Consensus 130 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 209 (355)
.|+.|+..|.++|..+|..+..|.+.+.+|++..+|+.+..-..++++++|+.....+.+|........|++|+..+.++
T Consensus 25 ~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra 104 (284)
T KOG4642|consen 25 RYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRA 104 (284)
T ss_pred hhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Hhh
Q 040440 210 LRK 212 (355)
Q Consensus 210 ~~~ 212 (355)
..+
T Consensus 105 ~sl 107 (284)
T KOG4642|consen 105 YSL 107 (284)
T ss_pred HHH
Confidence 765
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.20 E-value=1.7e-06 Score=47.01 Aligned_cols=32 Identities=25% Similarity=0.431 Sum_probs=20.2
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHHccCHHHHH
Q 040440 138 IEQHLAANPNDIEALQTLMEVRIKSQKLVEAV 169 (355)
Q Consensus 138 ~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~ 169 (355)
|+++|+.+|+++.+|+.+|.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 45666666666666666666666666666654
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.19 E-value=1.9e-06 Score=46.86 Aligned_cols=34 Identities=18% Similarity=0.263 Sum_probs=31.1
Q ss_pred HHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHH
Q 040440 280 VYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEK 313 (355)
Q Consensus 280 ~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 313 (355)
+|+++++.+|+++.+|+++|.+|...|++++|++
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 3789999999999999999999999999999863
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.18 E-value=5.7e-05 Score=69.90 Aligned_cols=143 Identities=16% Similarity=0.113 Sum_probs=73.9
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHH----------hhCC----------
Q 040440 155 LMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEIL----------RKDP---------- 214 (355)
Q Consensus 155 la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~----------~~~p---------- 214 (355)
+-..|...|.|++|.++.+.--++ .-...|++.+..+...+|.+.|+++|+++- .-+|
T Consensus 832 lNKlyQs~g~w~eA~eiAE~~DRi--HLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~ 909 (1416)
T KOG3617|consen 832 LNKLYQSQGMWSEAFEIAETKDRI--HLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRK 909 (1416)
T ss_pred HHHHHHhcccHHHHHHHHhhccce--ehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhc
Confidence 334455556666665554432111 112356666666666677777777776532 1122
Q ss_pred CCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHH
Q 040440 215 LRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRP 294 (355)
Q Consensus 215 ~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~ 294 (355)
.+...|.+.|......|+ ++.|+..|..|.++|. +.++..-+|+.++|-++.++ ..|..+
T Consensus 910 ~d~~L~~WWgqYlES~Ge-mdaAl~~Y~~A~D~fs--------------~VrI~C~qGk~~kAa~iA~e-----sgd~AA 969 (1416)
T KOG3617|consen 910 RDESLYSWWGQYLESVGE-MDAALSFYSSAKDYFS--------------MVRIKCIQGKTDKAARIAEE-----SGDKAA 969 (1416)
T ss_pred cchHHHHHHHHHHhcccc-hHHHHHHHHHhhhhhh--------------heeeEeeccCchHHHHHHHh-----cccHHH
Confidence 123334445555555555 4444444444444332 22233334444444443332 235556
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Q 040440 295 YLCQGIIYTLLRKKDEAEKQFEKFR 319 (355)
Q Consensus 295 ~~~l~~~~~~~g~~~~A~~~~~~~l 319 (355)
-+.+|..|...|++.+|...|.++.
T Consensus 970 cYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 970 CYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 6777888888888888887777653
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.00068 Score=58.65 Aligned_cols=165 Identities=12% Similarity=0.035 Sum_probs=112.4
Q ss_pred hccC-CHHHHHHHHHHHHHc----CCCCHHHHHHHHHHHHH---ccCHHHHHHHHHHH-HHcCCCchHHHHHHHHHHHH-
Q 040440 126 REDV-SYEEKEKEIEQHLAA----NPNDIEALQTLMEVRIK---SQKLVEAVDVIDRL-IELEPNEFEWQLLKAQVQSY- 195 (355)
Q Consensus 126 ~~~~-~~~~A~~~~~~~l~~----~p~~~~~~~~la~~~~~---~g~~~~A~~~~~~~-~~~~~~~~~~~~~la~~~~~- 195 (355)
|... +|+.-+++.+.+-.. -++...+....|.++.+ .|+.++|+.++..+ ....+.+++.+..+|.+|-.
T Consensus 151 yRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~ 230 (374)
T PF13281_consen 151 YRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKDL 230 (374)
T ss_pred hhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHH
Confidence 5555 999999998887665 45567778888888888 99999999999995 45566788888889987753
Q ss_pred --------cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHH----Hh-hccCCchHHHHH
Q 040440 196 --------AGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERC----KK-EKKKSDLRDFKL 262 (355)
Q Consensus 196 --------~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~----~~-~~~~~~~~~~~~ 262 (355)
....++|+..|.++.+.+|+.-.. .+++.++...|...+...+.-+-++.+. ++ ......+....-
T Consensus 231 ~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~G-IN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~A 309 (374)
T PF13281_consen 231 FLESNFTDRESLDKAIEWYRKGFEIEPDYYSG-INAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVA 309 (374)
T ss_pred HHHcCccchHHHHHHHHHHHHHHcCCccccch-HHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHH
Confidence 224789999999999998654332 3444455555543332221111121111 11 112223344455
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCCCC
Q 040440 263 LIAQIKVMESKHSEALRVYEELVKEEPRD 291 (355)
Q Consensus 263 ~la~~~~~~g~~~~A~~~~~~~l~~~~~~ 291 (355)
.++.+.+..|++++|.+.++++++..|..
T Consensus 310 Tl~Ea~vL~~d~~ka~~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 310 TLLEASVLAGDYEKAIQAAEKAFKLKPPA 338 (374)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence 67788888999999999999999986643
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.00049 Score=53.01 Aligned_cols=114 Identities=15% Similarity=0.119 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHcCCCchH---HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHhccCchHHHHHHH
Q 040440 167 EAVDVIDRLIELEPNEFE---WQLLKAQVQSYAGESEAAIKGFEEILRKDPLR---VEAYHGLVMAYDGSDKKLNEVEKR 240 (355)
Q Consensus 167 ~A~~~~~~~~~~~~~~~~---~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~~~~~~~a~~~ 240 (355)
+.....++.+..++.... +-..++..++..|++++|+..++.++....+. ..+-.+++.+....+.
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k-------- 141 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKK-------- 141 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhh--------
Confidence 444444555555544433 34566777888888888888888877643221 1123344444444444
Q ss_pred HHHHHHHHHhhccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q 040440 241 IEKAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEE 288 (355)
Q Consensus 241 ~~~Al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 288 (355)
+++|+..+................|+++...|+-++|+..|++++...
T Consensus 142 ~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 142 ADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHHHHhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 455555444433333333334444444444555555555555444443
|
|
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.11 E-value=4.3e-05 Score=60.43 Aligned_cols=98 Identities=18% Similarity=0.114 Sum_probs=86.1
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccC
Q 040440 152 LQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSD 231 (355)
Q Consensus 152 ~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 231 (355)
+..-|..++...+|+.|+..|.++|.++|..+..|.+.+.++.+..+++.+.....++++++|+.....+.+|.+.....
T Consensus 13 lkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~ 92 (284)
T KOG4642|consen 13 LKEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSK 92 (284)
T ss_pred HHhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhc
Confidence 34456677888999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred chHHHHHHHHHHHHHHHHh
Q 040440 232 KKLNEVEKRIEKAMERCKK 250 (355)
Q Consensus 232 ~~~~~a~~~~~~Al~~~~~ 250 (355)
. ++.++..+.+|..+++.
T Consensus 93 ~-~~eaI~~Lqra~sl~r~ 110 (284)
T KOG4642|consen 93 G-YDEAIKVLQRAYSLLRE 110 (284)
T ss_pred c-ccHHHHHHHHHHHHHhc
Confidence 7 66666666666666655
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.00019 Score=67.03 Aligned_cols=135 Identities=17% Similarity=0.198 Sum_probs=92.4
Q ss_pred HHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHH
Q 040440 160 IKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEK 239 (355)
Q Consensus 160 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~ 239 (355)
...+++.+|+....+.++..|+...+....|..+.++|+.++|..+++..-...+++......+..+|...++
T Consensus 20 ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~------- 92 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGK------- 92 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhh-------
Confidence 4667888888888888888888888888888888888888888877777666667777777777777777776
Q ss_pred HHHHHHHHHHh-hccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChH-HHHHHHHHHH
Q 040440 240 RIEKAMERCKK-EKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFR-PYLCQGIIYT 303 (355)
Q Consensus 240 ~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~-~~~~l~~~~~ 303 (355)
++++..++++ ....|. ......+-.+|.+.++|.+-.+.--++.+..|.++. .|..+..+..
T Consensus 93 -~d~~~~~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilq 156 (932)
T KOG2053|consen 93 -LDEAVHLYERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQ 156 (932)
T ss_pred -hhHHHHHHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHH
Confidence 6666666666 344455 666666666666666666655555555556665543 3333333333
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.00032 Score=63.80 Aligned_cols=120 Identities=19% Similarity=0.115 Sum_probs=93.7
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCc----hHHHHHHHHHHHHcCCHHHHHHH
Q 040440 130 SYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNE----FEWQLLKAQVQSYAGESEAAIKG 205 (355)
Q Consensus 130 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~~la~~~~~~g~~~~A~~~ 205 (355)
+.+.|.++++...+..|+..-.+...|.++...|+.++|++.|++++.....- .-.++.++.++..+++|++|.++
T Consensus 248 ~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~ 327 (468)
T PF10300_consen 248 PLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEY 327 (468)
T ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHH
Confidence 78899999999999999999999999999999999999999999988532222 22588899999999999999999
Q ss_pred HHHHHhhCCCCHHH-HHHHHHHHhccCchHHHHHHHHHHHHHHHHh
Q 040440 206 FEEILRKDPLRVEA-YHGLVMAYDGSDKKLNEVEKRIEKAMERCKK 250 (355)
Q Consensus 206 ~~~~~~~~p~~~~~-~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~ 250 (355)
|.++.+.+.-.... .+..|.|+...++ .+.+...-++|.+++.+
T Consensus 328 f~~L~~~s~WSka~Y~Y~~a~c~~~l~~-~~~~~~~~~~a~~l~~~ 372 (468)
T PF10300_consen 328 FLRLLKESKWSKAFYAYLAAACLLMLGR-EEEAKEHKKEAEELFRK 372 (468)
T ss_pred HHHHHhccccHHHHHHHHHHHHHHhhcc-chhhhhhHHHHHHHHHH
Confidence 99999976654444 4566677777776 32333333455544444
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=98.07 E-value=8.8e-06 Score=44.40 Aligned_cols=32 Identities=25% Similarity=0.342 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 040440 293 RPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPR 324 (355)
Q Consensus 293 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~ 324 (355)
.+|+.+|.++..+|++++|+..|+++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 46777777777777777777777777777775
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=98.06 E-value=1.3e-05 Score=43.69 Aligned_cols=33 Identities=33% Similarity=0.411 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 040440 293 RPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRN 325 (355)
Q Consensus 293 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~ 325 (355)
.+|+.+|.++..+|++++|+++|+++++++|++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 456777777777777777777777777777753
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.00053 Score=57.27 Aligned_cols=160 Identities=11% Similarity=0.043 Sum_probs=113.6
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCCH---HHHHHHHHHH
Q 040440 152 LQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRK-DPLRV---EAYHGLVMAY 227 (355)
Q Consensus 152 ~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~p~~~---~~~~~l~~~~ 227 (355)
+...+.+.+..|++.+|...++++++..|.+.-++..--.+++..|+...-...+++++-. +++.+ .+.-.++-.+
T Consensus 106 ~h~~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL 185 (491)
T KOG2610|consen 106 RHAKAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGL 185 (491)
T ss_pred hhhhHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhH
Confidence 3344556677888888888888888888888777777778888888888888888888876 55543 2333445556
Q ss_pred hccCchHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC----hHHHHHHHHHH
Q 040440 228 DGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRD----FRPYLCQGIIY 302 (355)
Q Consensus 228 ~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~----~~~~~~l~~~~ 302 (355)
...|- |++|.+..++ ...++.+.......+.++...|+..++.++..+.-..-... ..-|...+.++
T Consensus 186 ~E~g~--------y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~ 257 (491)
T KOG2610|consen 186 EECGI--------YDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFH 257 (491)
T ss_pred HHhcc--------chhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhh
Confidence 66666 6666666655 45577777777888888888888888888877643221110 12344567778
Q ss_pred HHcCCHHHHHHHHHHHH
Q 040440 303 TLLRKKDEAEKQFEKFR 319 (355)
Q Consensus 303 ~~~g~~~~A~~~~~~~l 319 (355)
...+.|+.|+++|..-+
T Consensus 258 iE~aeye~aleIyD~ei 274 (491)
T KOG2610|consen 258 IEGAEYEKALEIYDREI 274 (491)
T ss_pred hcccchhHHHHHHHHHH
Confidence 88889999999888754
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.00079 Score=55.44 Aligned_cols=118 Identities=19% Similarity=0.170 Sum_probs=87.8
Q ss_pred hhhccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHH-HHHHHHHHHcCCHHHH
Q 040440 124 SAREDVSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQ-LLKAQVQSYAGESEAA 202 (355)
Q Consensus 124 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~la~~~~~~g~~~~A 202 (355)
+..+.+++.+|...+..++...|++.++...++.+|...|+.+.|...+...-.......... ......+.+.....+.
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~ 222 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEI 222 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCH
Confidence 345566999999999999999999999999999999999999999999987543332221111 1112333344443333
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh
Q 040440 203 IKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK 250 (355)
Q Consensus 203 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~ 250 (355)
..+++.+..+|++.+..+.++..+...|+ .+.|++.+-.
T Consensus 223 -~~l~~~~aadPdd~~aa~~lA~~~~~~g~--------~e~Ale~Ll~ 261 (304)
T COG3118 223 -QDLQRRLAADPDDVEAALALADQLHLVGR--------NEAALEHLLA 261 (304)
T ss_pred -HHHHHHHHhCCCCHHHHHHHHHHHHHcCC--------HHHHHHHHHH
Confidence 23456677799999999999999999999 8888877654
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=97.94 E-value=3.1e-05 Score=42.13 Aligned_cols=31 Identities=32% Similarity=0.258 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 040440 185 WQLLKAQVQSYAGESEAAIKGFEEILRKDPL 215 (355)
Q Consensus 185 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~ 215 (355)
+++.+|.++...|++++|++.|+++++++|+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 4445555555555555555555555555544
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=97.94 E-value=2.5e-05 Score=42.58 Aligned_cols=31 Identities=26% Similarity=0.376 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcCCC
Q 040440 151 ALQTLMEVRIKSQKLVEAVDVIDRLIELEPN 181 (355)
Q Consensus 151 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~ 181 (355)
+|+.+|.+|...|++++|+..|+++++++|+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 4555555555555555555555555555543
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.0013 Score=59.82 Aligned_cols=155 Identities=16% Similarity=0.015 Sum_probs=112.2
Q ss_pred HHccCHHHHHHHHHHHHHcCCCc-hHH------HHHHHHHHH----HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHh
Q 040440 160 IKSQKLVEAVDVIDRLIELEPNE-FEW------QLLKAQVQS----YAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYD 228 (355)
Q Consensus 160 ~~~g~~~~A~~~~~~~~~~~~~~-~~~------~~~la~~~~----~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 228 (355)
--.||-+.++..+.++.+...-. +-+ |+.....+. ...+.+.|.++++...+..|+..-..+..|.++.
T Consensus 199 GF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~ 278 (468)
T PF10300_consen 199 GFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLFFEGRLER 278 (468)
T ss_pred CcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 35699999999999987732211 111 111111111 2457788999999999999999999999999999
Q ss_pred ccCchHHHHHHHHHHHHHHHHh-hccC----CchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHH
Q 040440 229 GSDKKLNEVEKRIEKAMERCKK-EKKK----SDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRD-FRPYLCQGIIY 302 (355)
Q Consensus 229 ~~~~~~~~a~~~~~~Al~~~~~-~~~~----~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~-~~~~~~l~~~~ 302 (355)
..|+ .++|++.+++ .... .-..-.++.++.++..+++|++|..+|.++.+.+.-. ....+..|.++
T Consensus 279 ~~g~--------~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~ 350 (468)
T PF10300_consen 279 LKGN--------LEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAACL 350 (468)
T ss_pred HhcC--------HHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 9999 6666666654 1111 1223447889999999999999999999999865533 34456678899
Q ss_pred HHcCCH-------HHHHHHHHHHHHhC
Q 040440 303 TLLRKK-------DEAEKQFEKFRRLV 322 (355)
Q Consensus 303 ~~~g~~-------~~A~~~~~~~l~~~ 322 (355)
...|+. ++|.++|+++-.+.
T Consensus 351 ~~l~~~~~~~~~~~~a~~l~~~vp~l~ 377 (468)
T PF10300_consen 351 LMLGREEEAKEHKKEAEELFRKVPKLK 377 (468)
T ss_pred HhhccchhhhhhHHHHHHHHHHHHHHH
Confidence 999999 88888888876554
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00045 Score=64.23 Aligned_cols=116 Identities=13% Similarity=0.118 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHH----------HHcCCC----------chHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 040440 150 EALQTLMEVRIKSQKLVEAVDVIDRL----------IELEPN----------EFEWQLLKAQVQSYAGESEAAIKGFEEI 209 (355)
Q Consensus 150 ~~~~~la~~~~~~g~~~~A~~~~~~~----------~~~~~~----------~~~~~~~la~~~~~~g~~~~A~~~~~~~ 209 (355)
..|++.+..+...+|.+.|+++|+++ +..+|. +...|...|......|+.+.|+.+|..+
T Consensus 859 ~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A 938 (1416)
T KOG3617|consen 859 NTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSA 938 (1416)
T ss_pred hhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHh
Confidence 35788888888999999999999984 222332 3345777888888899999999999886
Q ss_pred HhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 040440 210 LRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELV 285 (355)
Q Consensus 210 ~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 285 (355)
-. |+.+..+.+-+|+ .++|-.+.++ ..+..+.+.+|+.|...|+..+|+.+|.++-
T Consensus 939 ~D--------~fs~VrI~C~qGk--------~~kAa~iA~e----sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 939 KD--------YFSMVRIKCIQGK--------TDKAARIAEE----SGDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred hh--------hhhheeeEeeccC--------chHHHHHHHh----cccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 53 5666777777777 7777776655 4456677888888888888888888887663
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.0062 Score=54.34 Aligned_cols=180 Identities=15% Similarity=0.070 Sum_probs=120.7
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHccC--------------HHHHHHHHHHHHHcCC-CchHHHHHHHHHHHHcC-
Q 040440 134 KEKEIEQHLAANPNDIEALQTLMEVRIKSQK--------------LVEAVDVIDRLIELEP-NEFEWQLLKAQVQSYAG- 197 (355)
Q Consensus 134 A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~--------------~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~g- 197 (355)
..-.+++++..-+-.++.|+..+..+...++ -+++..+|++++...- .+...++.++..-...-
T Consensus 264 v~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~ 343 (656)
T KOG1914|consen 264 VMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALADYEESRYD 343 (656)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcc
Confidence 3446777777777778888877766666665 6788888888876522 23334444443222222
Q ss_pred --CHHHHHHHHHHHHhhCCCCH-HHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchH-HHHHHHHHH-HHHcc
Q 040440 198 --ESEAAIKGFEEILRKDPLRV-EAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLR-DFKLLIAQI-KVMES 272 (355)
Q Consensus 198 --~~~~A~~~~~~~~~~~p~~~-~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~-~~~~~la~~-~~~~g 272 (355)
.++..-..+++++.+...+. -+|..+.....+... .+.|..+|.+....+... .++..-|.+ |.-.+
T Consensus 344 ~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eG--------lkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~csk 415 (656)
T KOG1914|consen 344 DNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEG--------LKAARKIFKKAREDKRTRHHVFVAAALMEYYCSK 415 (656)
T ss_pred cchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhh--------HHHHHHHHHHHhhccCCcchhhHHHHHHHHHhcC
Confidence 36666777888877644333 334444444444444 566666666643333332 344433433 34579
Q ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 040440 273 KHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRL 321 (355)
Q Consensus 273 ~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 321 (355)
+.+-|.++|+-.++..++.+..-+.....+...|+-..|..+|++++..
T Consensus 416 D~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s 464 (656)
T KOG1914|consen 416 DKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTS 464 (656)
T ss_pred ChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhc
Confidence 9999999999999999999998888899999999999999999999886
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00087 Score=50.75 Aligned_cols=113 Identities=21% Similarity=0.210 Sum_probs=74.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHH
Q 040440 189 KAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIK 268 (355)
Q Consensus 189 la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~ 268 (355)
.|......|+.+.++..+++++.+...+.-.-... ..........+.+ ....+...++..+
T Consensus 12 ~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~-------~~W~~~~r~~l~~------------~~~~~~~~l~~~~ 72 (146)
T PF03704_consen 12 EARAAARAGDPEEAIELLEEALALYRGDFLPDLDD-------EEWVEPERERLRE------------LYLDALERLAEAL 72 (146)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTT-------STTHHHHHHHHHH------------HHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCc-------cHHHHHHHHHHHH------------HHHHHHHHHHHHH
Confidence 34555667888899999999988754321110000 0000000000111 1133455678888
Q ss_pred HHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 040440 269 VMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRR 320 (355)
Q Consensus 269 ~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 320 (355)
...|++++|+..+++++..+|.+..+|..+..+|...|+..+|+..|+++..
T Consensus 73 ~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 73 LEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999998854
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.84 E-value=4.1e-05 Score=66.74 Aligned_cols=107 Identities=21% Similarity=0.168 Sum_probs=93.0
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCc
Q 040440 153 QTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDK 232 (355)
Q Consensus 153 ~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 232 (355)
-..+...+..++|+.|+..|.++++++|+....+.+.+..+.+.+++..|+..+.++++.+|....+|+..|.+....++
T Consensus 8 k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~ 87 (476)
T KOG0376|consen 8 KNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGE 87 (476)
T ss_pred hhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHH
Confidence 34566777889999999999999999999999999999999999999999999999999999999999999999988888
Q ss_pred hHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHHHH
Q 040440 233 KLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQI 267 (355)
Q Consensus 233 ~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~ 267 (355)
+.+|+..++. ....|++..+...+..+
T Consensus 88 --------~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 88 --------FKKALLDLEKVKKLAPNDPDATRKIDEC 115 (476)
T ss_pred --------HHHHHHHHHHhhhcCcCcHHHHHHHHHH
Confidence 8888888887 55667777775555444
|
|
| >KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00018 Score=57.32 Aligned_cols=96 Identities=13% Similarity=0.210 Sum_probs=81.5
Q ss_pred hhhccCCHHHHHHHHHHHHH--------cCCCCH----------HHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHH
Q 040440 124 SAREDVSYEEKEKEIEQHLA--------ANPNDI----------EALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEW 185 (355)
Q Consensus 124 ~~~~~~~~~~A~~~~~~~l~--------~~p~~~----------~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 185 (355)
..|..++|.+|...|++++. ..|.++ ..+.+.+.++...|+|-++++....++..+|.+..+
T Consensus 187 ~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~nvKA 266 (329)
T KOG0545|consen 187 RLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKA 266 (329)
T ss_pred hhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHH
Confidence 34666699999999988863 344443 457788999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q 040440 186 QLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEA 219 (355)
Q Consensus 186 ~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 219 (355)
++..|.+....-+.++|...|.++++++|.-..+
T Consensus 267 ~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasv 300 (329)
T KOG0545|consen 267 YFRRAKAHAAVWNEAEAKADLQKVLELDPSLASV 300 (329)
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHH
Confidence 9999999999999999999999999999865544
|
|
| >KOG2471 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00041 Score=60.73 Aligned_cols=152 Identities=13% Similarity=0.071 Sum_probs=106.6
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHH-hhCCC--------CHHHHHHH
Q 040440 153 QTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEIL-RKDPL--------RVEAYHGL 223 (355)
Q Consensus 153 ~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~-~~~p~--------~~~~~~~l 223 (355)
......|++..+...+....+.+.....+...+.+..+..++..|++.+|.+.+...- ...+. .-..|.++
T Consensus 210 ~ykVr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNl 289 (696)
T KOG2471|consen 210 LYKVRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNL 289 (696)
T ss_pred HhhHHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCc
Confidence 3344455666666666666666666666667777777888888888888877654321 11121 11235677
Q ss_pred HHHHhccCchHHHHHHHHHHHHH-HHHhhccC-----------CchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Q 040440 224 VMAYDGSDKKLNEVEKRIEKAME-RCKKEKKK-----------SDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRD 291 (355)
Q Consensus 224 ~~~~~~~~~~~~~a~~~~~~Al~-~~~~~~~~-----------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~ 291 (355)
|-+.++.+. +..+..+|.+|++ .+.++... .....+.++.|..|...|+.-.|.++|.+++...-.+
T Consensus 290 GcIh~~~~~-y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~n 368 (696)
T KOG2471|consen 290 GCIHYQLGC-YQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRN 368 (696)
T ss_pred ceEeeehhh-HHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcC
Confidence 777777776 6667777777775 44442211 2345678999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHc
Q 040440 292 FRPYLCQGIIYTLL 305 (355)
Q Consensus 292 ~~~~~~l~~~~~~~ 305 (355)
+..|..++.++...
T Consensus 369 PrlWLRlAEcCima 382 (696)
T KOG2471|consen 369 PRLWLRLAECCIMA 382 (696)
T ss_pred cHHHHHHHHHHHHH
Confidence 99999999988753
|
|
| >KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.0063 Score=49.26 Aligned_cols=191 Identities=10% Similarity=0.098 Sum_probs=131.9
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHH-HHHHHHH
Q 040440 130 SYEEKEKEIEQHLAANPNDIEALQTLMEVRIKS-QKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESE-AAIKGFE 207 (355)
Q Consensus 130 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~-~A~~~~~ 207 (355)
.-..|.++-+.++..+|.+..+|...-.++... .+..+-++++.++++.+|++-.+|...-.+....|++. .-++..+
T Consensus 58 ~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~ 137 (318)
T KOG0530|consen 58 KSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTK 137 (318)
T ss_pred cCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHH
Confidence 557788899999999999988888777666654 46788899999999999999999998888888899888 8888999
Q ss_pred HHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHH------HHccCHHHHHHH
Q 040440 208 EILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQIK------VMESKHSEALRV 280 (355)
Q Consensus 208 ~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~------~~~g~~~~A~~~ 280 (355)
.++..+..+-.+|...-.+....+. ++.-+.+..+ +..+..+..+|...-.+. ...-..+.-+.+
T Consensus 138 ~~l~~DaKNYHaWshRqW~~r~F~~--------~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~~~~~~le~El~y 209 (318)
T KOG0530|consen 138 LMLDDDAKNYHAWSHRQWVLRFFKD--------YEDELAYADELLEEDIRNNSAWNQRYFVITNTKGVISKAELERELNY 209 (318)
T ss_pred HHHhccccchhhhHHHHHHHHHHhh--------HHHHHHHHHHHHHHhhhccchhheeeEEEEeccCCccHHHHHHHHHH
Confidence 9999888888888888777776666 5555544444 122222222222111000 111234556777
Q ss_pred HHHHHHhCCCChHHHHHHHHHHHH-cC--CHHHHHHHHHHHHHhCCCChhH
Q 040440 281 YEELVKEEPRDFRPYLCQGIIYTL-LR--KKDEAEKQFEKFRRLVPRNHPY 328 (355)
Q Consensus 281 ~~~~l~~~~~~~~~~~~l~~~~~~-~g--~~~~A~~~~~~~l~~~p~~~~~ 328 (355)
..+.+...|++..+|..|.-++.. .| ...+........+...|...++
T Consensus 210 t~~~I~~vP~NeSaWnYL~G~l~~d~gl~s~s~vv~f~~~l~~~~~~~sP~ 260 (318)
T KOG0530|consen 210 TKDKILLVPNNESAWNYLKGLLELDSGLSSDSKVVSFVENLYLQLPKRSPF 260 (318)
T ss_pred HHHHHHhCCCCccHHHHHHHHHHhccCCcCCchHHHHHHHHhhccCCCChh
Confidence 888889999999999999888876 44 1334444444444333443333
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=97.68 E-value=9.6e-05 Score=40.16 Aligned_cols=32 Identities=38% Similarity=0.473 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 040440 293 RPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPR 324 (355)
Q Consensus 293 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~ 324 (355)
.+|+.+|.+|..+|++++|..+|+++++++|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 35667777777777777777777777777663
|
... |
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.0035 Score=50.94 Aligned_cols=124 Identities=13% Similarity=0.208 Sum_probs=69.6
Q ss_pred cCHHHHHHHHHHHHHcCCCchHH----HHHHHHHHHHcCCHHHHHHHHHHHHhhC-----CCCHHHHHHHHHHHhccCch
Q 040440 163 QKLVEAVDVIDRLIELEPNEFEW----QLLKAQVQSYAGESEAAIKGFEEILRKD-----PLRVEAYHGLVMAYDGSDKK 233 (355)
Q Consensus 163 g~~~~A~~~~~~~~~~~~~~~~~----~~~la~~~~~~g~~~~A~~~~~~~~~~~-----p~~~~~~~~l~~~~~~~~~~ 233 (355)
.+.++|+.-|++++++.++..++ +-.+..+++++|+|++-.+.|.+++..- .+..+--.+-..-|....+.
T Consensus 41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~ 120 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKN 120 (440)
T ss_pred cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhh
Confidence 35666666666666666655443 3445566666777776666666665431 11111111111122223333
Q ss_pred HHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 040440 234 LNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVK 286 (355)
Q Consensus 234 ~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 286 (355)
.+.....|+..++.++..++..-.......+|.+|+..|+|.+-.++++++-.
T Consensus 121 m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~ 173 (440)
T KOG1464|consen 121 MDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQ 173 (440)
T ss_pred hHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHH
Confidence 44555567777777766555555555566677777777777777776666554
|
|
| >PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ] | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.0052 Score=53.84 Aligned_cols=148 Identities=20% Similarity=0.181 Sum_probs=102.6
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHc--------------C------------CCchH---HHHHHH
Q 040440 140 QHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIEL--------------E------------PNEFE---WQLLKA 190 (355)
Q Consensus 140 ~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--------------~------------~~~~~---~~~~la 190 (355)
..+..+|-+++++..++.++..+|+.+.|.+++++++-. + +.|.. +.+...
T Consensus 31 ~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i 110 (360)
T PF04910_consen 31 NLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYI 110 (360)
T ss_pred HHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHH
Confidence 345778999999999999999999999999999998532 1 11111 344556
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhcc-CCchHHHHHHHHHHH
Q 040440 191 QVQSYAGESEAAIKGFEEILRKDPL-RVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKK-KSDLRDFKLLIAQIK 268 (355)
Q Consensus 191 ~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~-~~~~~~~~~~la~~~ 268 (355)
....+.|-+..|.++.+-.+.++|. |+-........|.-..+.++-.+..++....... .. ....+.+.+..+.++
T Consensus 111 ~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~--~~~~~~lPn~a~S~aLA~ 188 (360)
T PF04910_consen 111 QSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCY--RNWLSLLPNFAFSIALAY 188 (360)
T ss_pred HHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhh--hhhhhhCccHHHHHHHHH
Confidence 7788999999999999999999998 7776666666655444434333333332222100 00 011335667777777
Q ss_pred HHccCH---------------HHHHHHHHHHHHhCC
Q 040440 269 VMESKH---------------SEALRVYEELVKEEP 289 (355)
Q Consensus 269 ~~~g~~---------------~~A~~~~~~~l~~~~ 289 (355)
...++- ++|...+.+++...|
T Consensus 189 ~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP 224 (360)
T PF04910_consen 189 FRLEKEESSQSSAQSGRSENSESADEALQKAILRFP 224 (360)
T ss_pred HHhcCccccccccccccccchhHHHHHHHHHHHHhH
Confidence 778777 899999999988766
|
Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions []. |
| >COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.029 Score=48.00 Aligned_cols=188 Identities=19% Similarity=0.095 Sum_probs=134.3
Q ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHH----cCCHH
Q 040440 129 VSYEEKEKEIEQHLAANPNDIEALQTLMEVRIK----SQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSY----AGESE 200 (355)
Q Consensus 129 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~ 200 (355)
.++..+...+..+-.. .+......++.+|.. ..+..+|+.+|+.+. ....+.+.+.+|.+|.. ..++.
T Consensus 55 ~~~~~a~~~~~~a~~~--~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a--~~g~~~a~~~lg~~~~~G~gv~~d~~ 130 (292)
T COG0790 55 PDYAKALKSYEKAAEL--GDAAALALLGQMYGAGKGVSRDKTKAADWYRCAA--ADGLAEALFNLGLMYANGRGVPLDLV 130 (292)
T ss_pred ccHHHHHHHHHHhhhc--CChHHHHHHHHHHHhccCccccHHHHHHHHHHHh--hcccHHHHHhHHHHHhcCCCcccCHH
Confidence 4778888888887662 234677788887774 356888999999655 45567788889998877 44999
Q ss_pred HHHHHHHHHHhhCCCC-HHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHH----ccCHH
Q 040440 201 AAIKGFEEILRKDPLR-VEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVM----ESKHS 275 (355)
Q Consensus 201 ~A~~~~~~~~~~~p~~-~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~ 275 (355)
+|..+|+++.+..-.. ....+.++.+|..... .........+|+..+.+.... ........+|.+|.. ..+++
T Consensus 131 ~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~-~~~~~~~~~~A~~~~~~aa~~-~~~~a~~~lg~~y~~G~Gv~~d~~ 208 (292)
T COG0790 131 KALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQ-ALAVAYDDKKALYLYRKAAEL-GNPDAQLLLGRMYEKGLGVPRDLK 208 (292)
T ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHHHcChh-hhcccHHHHhHHHHHHHHHHh-cCHHHHHHHHHHHHcCCCCCcCHH
Confidence 9999999999875433 3447788888876531 111222234666666662211 156778888888865 35899
Q ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHcC---------------CHHHHHHHHHHHHHhCCCC
Q 040440 276 EALRVYEELVKEEPRDFRPYLCQGIIYTLLR---------------KKDEAEKQFEKFRRLVPRN 325 (355)
Q Consensus 276 ~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g---------------~~~~A~~~~~~~l~~~p~~ 325 (355)
+|..+|.++-+... ....+.++ ++...| +...|...+.......+..
T Consensus 209 ~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 270 (292)
T COG0790 209 KAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFDN 270 (292)
T ss_pred HHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCChh
Confidence 99999999988765 77888888 666666 7788888888887776543
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.008 Score=45.45 Aligned_cols=65 Identities=25% Similarity=0.232 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh
Q 040440 185 WQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK 250 (355)
Q Consensus 185 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~ 250 (355)
+...++..+...|++++|+..+++++..+|.+...+..+..+|...|+ ...|...|++....+.+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~-~~~A~~~Y~~~~~~l~~ 128 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGR-RAEALRVYERYRRRLRE 128 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcC-HHHHHHHHHHHHHHHHH
Confidence 345566777888999999999999999999999999999999999888 66666666666666554
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0037 Score=52.30 Aligned_cols=94 Identities=16% Similarity=0.200 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCch----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 040440 149 IEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEF----EWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLV 224 (355)
Q Consensus 149 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 224 (355)
+.-+..-|+-|++..+|..|+..|.+.+...-.++ ..|.+.+.+....|+|..|+....+++..+|.+..+++.-+
T Consensus 81 Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~A 160 (390)
T KOG0551|consen 81 AENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGA 160 (390)
T ss_pred HHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhh
Confidence 44566778899999999999999999998744333 35888999999999999999999999999999999999999
Q ss_pred HHHhccCchHHHHHHHHHHHHHHHHh
Q 040440 225 MAYDGSDKKLNEVEKRIEKAMERCKK 250 (355)
Q Consensus 225 ~~~~~~~~~~~~a~~~~~~Al~~~~~ 250 (355)
.|+..... +..|+..++.
T Consensus 161 kc~~eLe~--------~~~a~nw~ee 178 (390)
T KOG0551|consen 161 KCLLELER--------FAEAVNWCEE 178 (390)
T ss_pred HHHHHHHH--------HHHHHHHHhh
Confidence 99888877 6666666665
|
|
| >KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.58 E-value=2.8e-05 Score=64.76 Aligned_cols=94 Identities=17% Similarity=0.130 Sum_probs=87.1
Q ss_pred hhhhhccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHH
Q 040440 122 TTSAREDVSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEA 201 (355)
Q Consensus 122 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 201 (355)
..+++..++++.|++.|..+++.+|.....+...+.++++.++...|+.-+..+++++|+...-|-..+.....+|++++
T Consensus 121 A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~ 200 (377)
T KOG1308|consen 121 ASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEE 200 (377)
T ss_pred HHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHH
Confidence 33567778999999999999999999999999999999999999999999999999999999888899999999999999
Q ss_pred HHHHHHHHHhhCCC
Q 040440 202 AIKGFEEILRKDPL 215 (355)
Q Consensus 202 A~~~~~~~~~~~p~ 215 (355)
|...+..+.+++-+
T Consensus 201 aa~dl~~a~kld~d 214 (377)
T KOG1308|consen 201 AAHDLALACKLDYD 214 (377)
T ss_pred HHHHHHHHHhcccc
Confidence 99999999998643
|
|
| >KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.007 Score=49.01 Aligned_cols=185 Identities=13% Similarity=0.118 Sum_probs=134.8
Q ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcC-CHHHHHHHHH
Q 040440 129 VSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAG-ESEAAIKGFE 207 (355)
Q Consensus 129 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~ 207 (355)
.+|.++..+|+.++..+. .-..|+.+-+.++.++|.+-.+|...-.++..++ +..+-++++.
T Consensus 40 e~fr~~m~YfRAI~~~~E-----------------~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~ 102 (318)
T KOG0530|consen 40 EDFRDVMDYFRAIIAKNE-----------------KSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLD 102 (318)
T ss_pred hhHHHHHHHHHHHHhccc-----------------cCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 367777777776665544 4456777777889999988887777666665554 6788899999
Q ss_pred HHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHH-HHHHHHHh-hccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 040440 208 EILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIE-KAMERCKK-EKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELV 285 (355)
Q Consensus 208 ~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~-~Al~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 285 (355)
++++-+|.+-.+|...-.+....|+ .. .-+++.+. ...+..+..+|...-.+...-+.++.-+.+..+++
T Consensus 103 eI~e~npKNYQvWHHRr~ive~l~d--------~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Ll 174 (318)
T KOG0530|consen 103 EIIEDNPKNYQVWHHRRVIVELLGD--------PSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELL 174 (318)
T ss_pred HHHHhCccchhHHHHHHHHHHHhcC--------cccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 9999999999999877777766666 33 44555555 45566777788888888888899999999999999
Q ss_pred HhCCCChHHHHHHHHHHHH-cC-----CHHHHHHHHHHHHHhCCCChhHHHHHHHHHHH
Q 040440 286 KEEPRDFRPYLCQGIIYTL-LR-----KKDEAEKQFEKFRRLVPRNHPYREYFVDNMVA 338 (355)
Q Consensus 286 ~~~~~~~~~~~~l~~~~~~-~g-----~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~ 338 (355)
+.+-.+-.+|+..-.+... .| ..+.-+.+..+.+.+.|+|.....++.+++..
T Consensus 175 e~Di~NNSAWN~Ryfvi~~~~~~~~~~~le~El~yt~~~I~~vP~NeSaWnYL~G~l~~ 233 (318)
T KOG0530|consen 175 EEDIRNNSAWNQRYFVITNTKGVISKAELERELNYTKDKILLVPNNESAWNYLKGLLEL 233 (318)
T ss_pred HHhhhccchhheeeEEEEeccCCccHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHh
Confidence 9887776676554322222 11 23445667778888899998877777776653
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.035 Score=49.78 Aligned_cols=185 Identities=13% Similarity=0.068 Sum_probs=130.9
Q ss_pred HHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHc---cCHHHHHHHHHHHHHcCCCchH-HHHHHHHHHHHcCCHHHHHHH
Q 040440 131 YEEKEKEIEQHLAAN-PNDIEALQTLMEVRIKS---QKLVEAVDVIDRLIELEPNEFE-WQLLKAQVQSYAGESEAAIKG 205 (355)
Q Consensus 131 ~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~---g~~~~A~~~~~~~~~~~~~~~~-~~~~la~~~~~~g~~~~A~~~ 205 (355)
-+++..+|+++++.. ..+...++.++..--.. ++++..-+.+++++.....+.. +|..+-..-.+..-...|+.+
T Consensus 309 t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~i 388 (656)
T KOG1914|consen 309 TDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKI 388 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHH
Confidence 467888888887733 22344444444433222 2377778888888876443333 566666666677788899999
Q ss_pred HHHHHhhCCCCHHHHHHHHHH-HhccCchHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHHHccCHHHHHHHHHH
Q 040440 206 FEEILRKDPLRVEAYHGLVMA-YDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQIKVMESKHSEALRVYEE 283 (355)
Q Consensus 206 ~~~~~~~~p~~~~~~~~l~~~-~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 283 (355)
|.++-+..-....++..-+.+ |...++ ..-|..+|+- +...++.+.+-......+...++-..|...|++
T Consensus 389 F~kaR~~~r~~hhVfVa~A~mEy~cskD--------~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr 460 (656)
T KOG1914|consen 389 FKKAREDKRTRHHVFVAAALMEYYCSKD--------KETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFER 460 (656)
T ss_pred HHHHhhccCCcchhhHHHHHHHHHhcCC--------hhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHH
Confidence 999987543333444333322 333445 6788888887 677888888888889999999999999999999
Q ss_pred HHHh--CCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 040440 284 LVKE--EPR-DFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVP 323 (355)
Q Consensus 284 ~l~~--~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p 323 (355)
++.. .++ ...+|..+......-|+...++++=++-....|
T Consensus 461 ~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~ 503 (656)
T KOG1914|consen 461 VLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFP 503 (656)
T ss_pred HHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcc
Confidence 9987 332 457888888888899999988888887776666
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00028 Score=38.26 Aligned_cols=30 Identities=23% Similarity=0.299 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 040440 185 WQLLKAQVQSYAGESEAAIKGFEEILRKDP 214 (355)
Q Consensus 185 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~p 214 (355)
+|+.+|.+|...|++++|++.|+++++++|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 344455555555555555555555555444
|
... |
| >KOG3783 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.078 Score=47.67 Aligned_cols=194 Identities=15% Similarity=0.019 Sum_probs=124.4
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCch----HHHHHHHHHHHHcCCHHHHHHH
Q 040440 130 SYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEF----EWQLLKAQVQSYAGESEAAIKG 205 (355)
Q Consensus 130 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~la~~~~~~g~~~~A~~~ 205 (355)
+.+...+.+....+..|.++-.....+..+...|+.+.|+..++..+. +.-. -.++.+|.++..+.+|..|-..
T Consensus 248 d~~~~~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~--~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~ 325 (546)
T KOG3783|consen 248 DGEECEKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIP--IRMKQVKSLMVFERAWLSVGQHQYSRAADS 325 (546)
T ss_pred cHHHHHHHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 335556666667778888888888888888888888888888888775 2211 1366778888888888888888
Q ss_pred HHHHHhhCCCCHHHHHHHH-HHHhccCch-------HHHHH---------------------------------------
Q 040440 206 FEEILRKDPLRVEAYHGLV-MAYDGSDKK-------LNEVE--------------------------------------- 238 (355)
Q Consensus 206 ~~~~~~~~p~~~~~~~~l~-~~~~~~~~~-------~~~a~--------------------------------------- 238 (355)
+........-..-.|..++ -|+...++. .+.+.
T Consensus 326 ~~~L~desdWS~a~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~E~f~~RKverf~~~~~~~~~ 405 (546)
T KOG3783|consen 326 FDLLRDESDWSHAFYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNLPLEKFIVRKVERFVKRGPLNAS 405 (546)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhccccCchhHHHHHHHHHHhcccccccc
Confidence 8887776544444444443 222221111 11110
Q ss_pred ----------------------HHHHHHHHHHHhh-ccCCchH-HHHHHHHHHHHHccCHHHHHHHHHHHHHhC---CC-
Q 040440 239 ----------------------KRIEKAMERCKKE-KKKSDLR-DFKLLIAQIKVMESKHSEALRVYEELVKEE---PR- 290 (355)
Q Consensus 239 ----------------------~~~~~Al~~~~~~-~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~~l~~~---~~- 290 (355)
....+....++.. ..+.++. -.++.+|.++..+|+-..|..+|...++.. ..
T Consensus 406 ~~la~P~~El~Y~Wngf~~~s~~~l~k~~~~~~~~~~~d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d 485 (546)
T KOG3783|consen 406 ILLASPYYELAYFWNGFSRMSKNELEKMRAELENPKIDDSDDEGLKYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTED 485 (546)
T ss_pred ccccchHHHHHHHHhhcccCChhhHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccc
Confidence 0001111111110 1122222 235667888999999999999999887432 11
Q ss_pred ---ChHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCC
Q 040440 291 ---DFRPYLCQGIIYTLLRK-KDEAEKQFEKFRRLVPRN 325 (355)
Q Consensus 291 ---~~~~~~~l~~~~~~~g~-~~~A~~~~~~~l~~~p~~ 325 (355)
-+.+++.+|..|..+|. ..++..++.++.....++
T Consensus 486 ~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~dY 524 (546)
T KOG3783|consen 486 LWAVPFALYELALLYWDLGGGLKEARALLLKAREYASDY 524 (546)
T ss_pred cccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhcccc
Confidence 35688999999999998 999999999998877543
|
|
| >KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0022 Score=53.58 Aligned_cols=101 Identities=14% Similarity=0.037 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHH
Q 040440 185 WQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLI 264 (355)
Q Consensus 185 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~l 264 (355)
-+-.-|.-|++..+|..|+..|.+.++..-.+++.. ..+|.+.
T Consensus 83 n~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dln-------------------------------------avLY~NR 125 (390)
T KOG0551|consen 83 NYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLN-------------------------------------AVLYTNR 125 (390)
T ss_pred HHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHH-------------------------------------HHHHhhH
Confidence 345567778888889999999888888754433321 1223333
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 040440 265 AQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLV 322 (355)
Q Consensus 265 a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 322 (355)
|.+....|+|..|+.-+.+++..+|.+..+++.=+.++..+.++.+|..+++..+.++
T Consensus 126 AAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d 183 (390)
T KOG0551|consen 126 AAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQID 183 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhh
Confidence 4444445556666666666666666666666666666666666555555555554443
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.046 Score=51.17 Aligned_cols=177 Identities=16% Similarity=0.054 Sum_probs=121.2
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc-----cCHHHHHHHHHHHHHc-----CCCchHHHHHHHHHHHHcC---
Q 040440 131 YEEKEKEIEQHLAANPNDIEALQTLMEVRIKS-----QKLVEAVDVIDRLIEL-----EPNEFEWQLLKAQVQSYAG--- 197 (355)
Q Consensus 131 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~-----g~~~~A~~~~~~~~~~-----~~~~~~~~~~la~~~~~~g--- 197 (355)
..++...++.+.+. .+..+...+|.+|..- .|.+.|+.+|+.+... .-..+.+...+|.+|.+..
T Consensus 228 ~~~a~~~~~~~a~~--g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~ 305 (552)
T KOG1550|consen 228 LSEAFKYYREAAKL--GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVE 305 (552)
T ss_pred hhHHHHHHHHHHhh--cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCc
Confidence 45677777776553 4677888888888754 7899999999999771 1124457788999888743
Q ss_pred --CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccC--chHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHH---
Q 040440 198 --ESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSD--KKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVM--- 270 (355)
Q Consensus 198 --~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~--~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~--- 270 (355)
+++.|+.+|.++-.. +++.+.+.+|.++.... ++ +.+|.+++..... .......+.++.+|..
T Consensus 306 ~~d~~~A~~~~~~aA~~--g~~~a~~~lg~~~~~g~~~~d-------~~~A~~yy~~Aa~-~G~~~A~~~la~~y~~G~g 375 (552)
T KOG1550|consen 306 KIDYEKALKLYTKAAEL--GNPDAQYLLGVLYETGTKERD-------YRRAFEYYSLAAK-AGHILAIYRLALCYELGLG 375 (552)
T ss_pred cccHHHHHHHHHHHHhc--CCchHHHHHHHHHHcCCcccc-------HHHHHHHHHHHHH-cCChHHHHHHHHHHHhCCC
Confidence 778899999998876 45677788898887766 33 4455555444221 2345667777887764
Q ss_pred -ccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc-CCHHHHHHHHHHHHHh
Q 040440 271 -ESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLL-RKKDEAEKQFEKFRRL 321 (355)
Q Consensus 271 -~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~l~~ 321 (355)
..+.+.|..+++++.+.. .+.+...++..+..- ++++.+.-.+......
T Consensus 376 v~r~~~~A~~~~k~aA~~g--~~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~ 426 (552)
T KOG1550|consen 376 VERNLELAFAYYKKAAEKG--NPSAAYLLGAFYEYGVGRYDTALALYLYLAEL 426 (552)
T ss_pred cCCCHHHHHHHHHHHHHcc--ChhhHHHHHHHHHHccccccHHHHHHHHHHHh
Confidence 358899999999998876 444455555544433 6666666655554443
|
|
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.025 Score=49.02 Aligned_cols=146 Identities=13% Similarity=0.099 Sum_probs=104.4
Q ss_pred HHHHHHHHcCCCchHHHHHHHHHHHHcCC------------HHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHH
Q 040440 170 DVIDRLIELEPNEFEWQLLKAQVQSYAGE------------SEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEV 237 (355)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~------------~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a 237 (355)
.-|++.++.+|.+...|..+....-..-. .+.-+.+|++|++.+|++...+..+..+.....+ .+..
T Consensus 6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~-~~~l 84 (321)
T PF08424_consen 6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWD-SEKL 84 (321)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCC-HHHH
Confidence 45778888999999999998865544422 4567889999999999999998888888877765 3333
Q ss_pred HHHHHHHHHHHHhhccCCchHHHHHHHHHHHHH---ccCHHHHHHHHHHHHHhCC----C--------------ChHHHH
Q 040440 238 EKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVM---ESKHSEALRVYEELVKEEP----R--------------DFRPYL 296 (355)
Q Consensus 238 ~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~---~g~~~~A~~~~~~~l~~~~----~--------------~~~~~~ 296 (355)
...+++++. .++....+|..+...... .-.++.....|.+++..-. . -..++.
T Consensus 85 ~~~we~~l~------~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~ 158 (321)
T PF08424_consen 85 AKKWEELLF------KNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFL 158 (321)
T ss_pred HHHHHHHHH------HCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHH
Confidence 334444443 367777776665544433 3357788888888775311 0 124566
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC
Q 040440 297 CQGIIYTLLRKKDEAEKQFEKFRRLV 322 (355)
Q Consensus 297 ~l~~~~~~~g~~~~A~~~~~~~l~~~ 322 (355)
.+.....+.|..+.|...++-.++++
T Consensus 159 r~~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 159 RLCRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred HHHHHHHHCCchHHHHHHHHHHHHHH
Confidence 77788889999999999999999975
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.074 Score=50.67 Aligned_cols=200 Identities=14% Similarity=0.024 Sum_probs=124.4
Q ss_pred hhhhhccCCHHHHHHHHHHHHHcCCC--C-------HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCch-----HHHH
Q 040440 122 TTSAREDVSYEEKEKEIEQHLAANPN--D-------IEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEF-----EWQL 187 (355)
Q Consensus 122 ~~~~~~~~~~~~A~~~~~~~l~~~p~--~-------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~ 187 (355)
....+...++++|..++.++-..-+. . .......|.+....|+.++|+++.+.++..-|.+. ..+.
T Consensus 422 aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~s 501 (894)
T COG2909 422 AWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALS 501 (894)
T ss_pred HHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhh
Confidence 33445556899999998888664333 1 23444567788899999999999999998866543 3577
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCC----CHHHH--HHHHHHHhccCchHHHHHHHHHHHHHHHHh--hccCCchHH
Q 040440 188 LKAQVQSYAGESEAAIKGFEEILRKDPL----RVEAY--HGLVMAYDGSDKKLNEVEKRIEKAMERCKK--EKKKSDLRD 259 (355)
Q Consensus 188 ~la~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~--~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~--~~~~~~~~~ 259 (355)
.+|.+..-.|++++|+.+..++.+.... ...+| ...+.++..+|+ .+...-+++...... ....+....
T Consensus 502 v~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq---~~~a~~~~~~~~~~~q~l~q~~~~~f 578 (894)
T COG2909 502 VLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQ---VARAEQEKAFNLIREQHLEQKPRHEF 578 (894)
T ss_pred hhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHHHHHhhhcccchh
Confidence 7889999999999999999988887322 22333 334556666663 222222333333222 222333222
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh----CCCC--hH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 040440 260 FKLLIAQIKVMESKHSEALRVYEELVKE----EPRD--FR-PYLCQGIIYTLLRKKDEAEKQFEKFRRLVPR 324 (355)
Q Consensus 260 ~~~~la~~~~~~g~~~~A~~~~~~~l~~----~~~~--~~-~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~ 324 (355)
.....+.++...-+++.+..-....++. .|.. .. .++.++.++...|+.++|...+.+...+.-+
T Consensus 579 ~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~ 650 (894)
T COG2909 579 LVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLN 650 (894)
T ss_pred HHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcC
Confidence 2223333333333356555555555443 2222 22 2347899999999999999999998776433
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.054 Score=44.31 Aligned_cols=192 Identities=14% Similarity=0.140 Sum_probs=116.8
Q ss_pred CHHHHHHHHHHHHHcCCCCH----HHHHHHHHHHHHccCHHHHHHHHHHHHHc-----CCCchH-HHHHHHHHHHHcCCH
Q 040440 130 SYEEKEKEIEQHLAANPNDI----EALQTLMEVRIKSQKLVEAVDVIDRLIEL-----EPNEFE-WQLLKAQVQSYAGES 199 (355)
Q Consensus 130 ~~~~A~~~~~~~l~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~-~~~~la~~~~~~g~~ 199 (355)
+.++|+.-|+++++..++.. .++..+..++++.|+|++-.+.|.+++.. ..+..+ ....+-..-....+.
T Consensus 42 ~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m 121 (440)
T KOG1464|consen 42 EPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNM 121 (440)
T ss_pred CHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhh
Confidence 88999999999999988764 46778888999999999999999887653 111111 111111111122333
Q ss_pred HHHHHHHHHHHhh--CCCCHHHH----HHHHHHHhccCchHHHHHHHHHHHHHHHHh------hccCCchHHHHHHHHHH
Q 040440 200 EAAIKGFEEILRK--DPLRVEAY----HGLVMAYDGSDKKLNEVEKRIEKAMERCKK------EKKKSDLRDFKLLIAQI 267 (355)
Q Consensus 200 ~~A~~~~~~~~~~--~p~~~~~~----~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~------~~~~~~~~~~~~~la~~ 267 (355)
+--.+.|+..+.. +..+...| ..+|.+|...++ +....+...+--..++. .+......+++..-.++
T Consensus 122 ~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e-~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQm 200 (440)
T KOG1464|consen 122 DLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGE-YTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQM 200 (440)
T ss_pred HHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHH-HHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhh
Confidence 3334444444432 22333444 367888888877 33322222222222222 11122334556666788
Q ss_pred HHHccCHHHHHHHHHHHHHhCCC--ChHH----HHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 040440 268 KVMESKHSEALRVYEELVKEEPR--DFRP----YLCQGIIYTLLRKKDEAEKQFEKFRRLV 322 (355)
Q Consensus 268 ~~~~g~~~~A~~~~~~~l~~~~~--~~~~----~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 322 (355)
|..+++..+-...|++++..... .+.+ .-.=|..+.+.|+|++|-..|-++.+..
T Consensus 201 YT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNY 261 (440)
T KOG1464|consen 201 YTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNY 261 (440)
T ss_pred hhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhcc
Confidence 88999999999999999876432 2222 2233566788899999988888887754
|
|
| >KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.016 Score=52.36 Aligned_cols=74 Identities=14% Similarity=0.157 Sum_probs=59.0
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHH
Q 040440 261 KLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHPYREYFVD 334 (355)
Q Consensus 261 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~ 334 (355)
...+|++.++-|..-.|-..+.+++.+....+-.++.+|.++..+.+.+.|++.|+++++++|++.....-+..
T Consensus 645 ~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~~~~~~~~l~~ 718 (886)
T KOG4507|consen 645 LVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQALKLTTKCPECENSLKL 718 (886)
T ss_pred HHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcCCCChhhHHHHHH
Confidence 45567777777777777777777777776677788899999999999999999999999999998766544433
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.00048 Score=36.97 Aligned_cols=31 Identities=23% Similarity=0.259 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 040440 294 PYLCQGIIYTLLRKKDEAEKQFEKFRRLVPR 324 (355)
Q Consensus 294 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~ 324 (355)
+++.+|.++.+.|++++|+..|+++++..|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 4455666666666666666666666665554
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.029 Score=42.30 Aligned_cols=82 Identities=18% Similarity=0.192 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhcc
Q 040440 151 ALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGS 230 (355)
Q Consensus 151 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 230 (355)
.+..+..+-...++.+++..++..+--+.|+.+..-..-|.++...|++.+|+.+++.+.+..|..+.+.-.++.|+...
T Consensus 12 gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~ 91 (160)
T PF09613_consen 12 GLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYAL 91 (160)
T ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHc
Confidence 34455555667778888888888887788888888888888888888888888888888777777777777777777777
Q ss_pred Cc
Q 040440 231 DK 232 (355)
Q Consensus 231 ~~ 232 (355)
++
T Consensus 92 ~D 93 (160)
T PF09613_consen 92 GD 93 (160)
T ss_pred CC
Confidence 66
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.088 Score=47.93 Aligned_cols=176 Identities=14% Similarity=0.004 Sum_probs=133.2
Q ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHc-CCCchHHHHHHHHHHHHcCCHHHHHHHHH
Q 040440 129 VSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIEL-EPNEFEWQLLKAQVQSYAGESEAAIKGFE 207 (355)
Q Consensus 129 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 207 (355)
++++...-.|++++--.....+.|...+......|+.+-|-..+.++.+. .+..+.....-+......|++..|...++
T Consensus 311 g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq 390 (577)
T KOG1258|consen 311 GDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQ 390 (577)
T ss_pred ccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHH
Confidence 38888999999998877788899999999999999999999999988776 56667788888888889999999999999
Q ss_pred HHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhc-cCCchHHHHHHHHHH-HHHccCHHHHHHHHHHHH
Q 040440 208 EILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEK-KKSDLRDFKLLIAQI-KVMESKHSEALRVYEELV 285 (355)
Q Consensus 208 ~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~-~~~~~~~~~~~la~~-~~~~g~~~~A~~~~~~~l 285 (355)
++....|+...+-...+....+.|. .+.+.. +.+.+....... ........+...++. +.-.++.+.|...+.+++
T Consensus 391 ~i~~e~pg~v~~~l~~~~~e~r~~~-~~~~~~-~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~ 468 (577)
T KOG1258|consen 391 RIESEYPGLVEVVLRKINWERRKGN-LEDANY-KNELYSSIYEGKENNGILEKLYVKFARLRYKIREDADLARIILLEAN 468 (577)
T ss_pred HHHhhCCchhhhHHHHHhHHHHhcc-hhhhhH-HHHHHHHhcccccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhh
Confidence 9999889888887777777777776 222211 222222222222 222223345555554 345689999999999999
Q ss_pred HhCCCChHHHHHHHHHHHHcC
Q 040440 286 KEEPRDFRPYLCQGIIYTLLR 306 (355)
Q Consensus 286 ~~~~~~~~~~~~l~~~~~~~g 306 (355)
+..|.+...|..+..+....+
T Consensus 469 ~~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 469 DILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred hcCCccHHHHHHHHHHHHhCC
Confidence 999999988888888777665
|
|
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.004 Score=51.85 Aligned_cols=70 Identities=21% Similarity=0.222 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhH
Q 040440 259 DFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHPY 328 (355)
Q Consensus 259 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 328 (355)
....++-.+|...++++.|+.+.+.++...|+++.-+...|.+|.++|.+..|...++..++..|+++..
T Consensus 182 Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a 251 (269)
T PRK10941 182 KLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPIS 251 (269)
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhH
Confidence 3466677889999999999999999999999999999999999999999999999999999999988654
|
|
| >PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0049 Score=42.02 Aligned_cols=66 Identities=21% Similarity=0.260 Sum_probs=48.3
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCc--hHHHHHHHHHHHHcCCHH
Q 040440 135 EKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNE--FEWQLLKAQVQSYAGESE 200 (355)
Q Consensus 135 ~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~la~~~~~~g~~~ 200 (355)
+..+++.++.+|++.++.+.+|..+...|++++|++.+-.+++.+++. ..+...+-.++...|.-+
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~ 75 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGD 75 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCC
Confidence 567788888999999999999999999999999999999999887644 445555666666666543
|
|
| >KOG2471 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0047 Score=54.37 Aligned_cols=140 Identities=12% Similarity=0.035 Sum_probs=105.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhc--cCCc--------hH
Q 040440 189 KAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEK--KKSD--------LR 258 (355)
Q Consensus 189 la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~--~~~~--------~~ 258 (355)
....+.+..+...+..-.+.++....+........++.++..|+ +.+|.+.+.... ..+. ..
T Consensus 212 kVr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn--------~~kA~KlL~~sni~~~~g~~~T~q~~~c 283 (696)
T KOG2471|consen 212 KVRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGN--------HPKAMKLLLVSNIHKEAGGTITPQLSSC 283 (696)
T ss_pred hHHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcc--------hHHHHHHHHhcccccccCccccchhhhh
Confidence 33455666667777777777777777788888888899988998 999999887722 2221 23
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHh---------CC---------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 040440 259 DFKLLIAQIKVMESKHSEALRVYEELVKE---------EP---------RDFRPYLCQGIIYTLLRKKDEAEKQFEKFRR 320 (355)
Q Consensus 259 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~---------~~---------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 320 (355)
.+|.++|-+++..|.|.-+..+|.++++. .| ....+.++.|..|...|+.-.|.++|.++..
T Consensus 284 if~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~ 363 (696)
T KOG2471|consen 284 IFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVH 363 (696)
T ss_pred eeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHH
Confidence 34788999999999999999999999951 11 2457889999999999999999999999999
Q ss_pred hCCCChhHHHHHHHHH
Q 040440 321 LVPRNHPYREYFVDNM 336 (355)
Q Consensus 321 ~~p~~~~~~~~~~~~~ 336 (355)
..-.++..+..+....
T Consensus 364 vfh~nPrlWLRlAEcC 379 (696)
T KOG2471|consen 364 VFHRNPRLWLRLAECC 379 (696)
T ss_pred HHhcCcHHHHHHHHHH
Confidence 8766655544444333
|
|
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0016 Score=39.19 Aligned_cols=39 Identities=13% Similarity=0.102 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHH
Q 040440 293 RPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHPYREY 331 (355)
Q Consensus 293 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~ 331 (355)
+..+.++..+.++|+|++|..+.+.+++..|+|.....+
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L 40 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSL 40 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence 356778888888888888888888888888888665444
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.00061 Score=36.53 Aligned_cols=30 Identities=20% Similarity=0.287 Sum_probs=15.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 040440 186 QLLKAQVQSYAGESEAAIKGFEEILRKDPL 215 (355)
Q Consensus 186 ~~~la~~~~~~g~~~~A~~~~~~~~~~~p~ 215 (355)
++.+|.++...|++++|++.|+++++..|+
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 444555555555555555555555554443
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.056 Score=42.00 Aligned_cols=166 Identities=17% Similarity=0.095 Sum_probs=103.8
Q ss_pred HHHHHHHHHcCCCCHHHHH------HHHHHHHHccCH---HHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHH
Q 040440 135 EKEIEQHLAANPNDIEALQ------TLMEVRIKSQKL---VEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKG 205 (355)
Q Consensus 135 ~~~~~~~l~~~p~~~~~~~------~la~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 205 (355)
++.+..+.+.+..-..+-. ..|.-|++..+. .+|-..|+++++.- ..+.. +....
T Consensus 11 l~~ik~wwkeNGk~li~gviLg~~~lfGW~ywq~~q~~q~~~AS~~Y~~~i~~~---------------~ak~~-~~~~~ 74 (207)
T COG2976 11 LEAIKDWWKENGKALIVGVILGLGGLFGWRYWQSHQVEQAQEASAQYQNAIKAV---------------QAKKP-KSIAA 74 (207)
T ss_pred HHHHHHHHHHCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------hcCCc-hhHHH
Confidence 4455555665554333222 233344444333 35666666655321 12222 44555
Q ss_pred HHHHHhhCCCCHHH---HHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCch----HHHHHHHHHHHHHccCHHHHH
Q 040440 206 FEEILRKDPLRVEA---YHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDL----RDFKLLIAQIKVMESKHSEAL 278 (355)
Q Consensus 206 ~~~~~~~~p~~~~~---~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~----~~~~~~la~~~~~~g~~~~A~ 278 (355)
.++....++....+ -..++..+...++ +++|+..++.....+.+ ..+...++++...+|.+|+|+
T Consensus 75 ~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~--------~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL 146 (207)
T COG2976 75 AEKFVQANGKTIYAVLAALELAKAEVEANN--------LDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAAL 146 (207)
T ss_pred HHHHHhhccccHHHHHHHHHHHHHHHhhcc--------HHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 56666656554433 3456777778888 88888877763322332 334778899999999999999
Q ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 040440 279 RVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRN 325 (355)
Q Consensus 279 ~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~ 325 (355)
..++......- ........|+++...|+.++|+..|++++...++.
T Consensus 147 ~~L~t~~~~~w-~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 147 KTLDTIKEESW-AAIVAELRGDILLAKGDKQEARAAYEKALESDASP 192 (207)
T ss_pred HHHhccccccH-HHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCCh
Confidence 99987533211 22335568999999999999999999999987543
|
|
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0067 Score=50.55 Aligned_cols=76 Identities=11% Similarity=0.071 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 040440 151 ALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMA 226 (355)
Q Consensus 151 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 226 (355)
.+.++-.+|.+.++++.|+.+.+.++...|+++.-+...|.+|.++|.+..|+..++..++..|+++.+-.....+
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql 258 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQI 258 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHH
Confidence 4556777899999999999999999999999999999999999999999999999999999999998875544433
|
|
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.046 Score=48.59 Aligned_cols=95 Identities=13% Similarity=0.058 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCC-HHHHHHHHHHHH
Q 040440 132 EEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGE-SEAAIKGFEEIL 210 (355)
Q Consensus 132 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~~~ 210 (355)
..-..+|+.++...+.|+..|........+.+.+.+--.+|.+++..+|++++.|..-+.-.+..+. .+.|...|.+++
T Consensus 88 ~rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgL 167 (568)
T KOG2396|consen 88 NRIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGL 167 (568)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHh
Confidence 3457789999999999999999999888888889999999999999999999999998876666665 999999999999
Q ss_pred hhCCCCHHHHHHHHHH
Q 040440 211 RKDPLRVEAYHGLVMA 226 (355)
Q Consensus 211 ~~~p~~~~~~~~l~~~ 226 (355)
+.+|+.+..|...-..
T Consensus 168 R~npdsp~Lw~eyfrm 183 (568)
T KOG2396|consen 168 RFNPDSPKLWKEYFRM 183 (568)
T ss_pred hcCCCChHHHHHHHHH
Confidence 9999999887654433
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.00088 Score=36.83 Aligned_cols=26 Identities=19% Similarity=0.153 Sum_probs=16.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 040440 295 YLCQGIIYTLLRKKDEAEKQFEKFRR 320 (355)
Q Consensus 295 ~~~l~~~~~~~g~~~~A~~~~~~~l~ 320 (355)
|..||.+|...|++++|+++|++++.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55666666666666666666666443
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.057 Score=47.42 Aligned_cols=181 Identities=15% Similarity=0.074 Sum_probs=122.7
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 040440 132 EEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILR 211 (355)
Q Consensus 132 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 211 (355)
+.---++++++...+-.++.|+-........+|-+.|+...++++...|. ..+.++.+|...++-++...+|+++.+
T Consensus 285 qRi~y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~sps---L~~~lse~yel~nd~e~v~~~fdk~~q 361 (660)
T COG5107 285 QRIHYIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPS---LTMFLSEYYELVNDEEAVYGCFDKCTQ 361 (660)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCc---hheeHHHHHhhcccHHHHhhhHHHHHH
Confidence 34445678888888888999999999999999999999999999877665 666778877777777777777776654
Q ss_pred h---------------CCCCH----HHHH------HHHHH-----HhccCchHHHHHHHHHHHHHHHHhhccCC-chHHH
Q 040440 212 K---------------DPLRV----EAYH------GLVMA-----YDGSDKKLNEVEKRIEKAMERCKKEKKKS-DLRDF 260 (355)
Q Consensus 212 ~---------------~p~~~----~~~~------~l~~~-----~~~~~~~~~~a~~~~~~Al~~~~~~~~~~-~~~~~ 260 (355)
. ..+++ +..+ .++.| ..+... .+.|..+|.+..+.+ ....+
T Consensus 362 ~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~G--------l~aaR~~F~k~rk~~~~~h~v 433 (660)
T COG5107 362 DLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRG--------LEAARKLFIKLRKEGIVGHHV 433 (660)
T ss_pred HHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhh--------HHHHHHHHHHHhccCCCCcce
Confidence 2 00111 1111 11111 111111 455666666643333 22333
Q ss_pred HHHHHHH-HHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 040440 261 KLLIAQI-KVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVP 323 (355)
Q Consensus 261 ~~~la~~-~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p 323 (355)
+..-|.+ |...|++.-|..+|+-.+...|+++...+..-..+...++-+.|..+|++++..-.
T Consensus 434 yi~~A~~E~~~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r~~ 497 (660)
T COG5107 434 YIYCAFIEYYATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFETSVERLE 497 (660)
T ss_pred eeeHHHHHHHhcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHH
Confidence 3333333 44679999999999999999998877777777778888999999999998776543
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.047 Score=48.03 Aligned_cols=168 Identities=20% Similarity=0.154 Sum_probs=101.2
Q ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCC----CchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCC--HHH
Q 040440 147 NDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEP----NEFEWQLLKAQVQSYAGESEAAIKGFEEILRKD-PLR--VEA 219 (355)
Q Consensus 147 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~--~~~ 219 (355)
.....|...+.+..+.|+++.|...+.++....+ ..+.+.+..+.+....|+..+|+..+++.+... ... ...
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~ 223 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSIS 223 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccccc
Confidence 4456677778888888888888888888776542 145567777888888888888888887777621 111 000
Q ss_pred HHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHc------cCHHHHHHHHHHHHHhCCCChH
Q 040440 220 YHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVME------SKHSEALRVYEELVKEEPRDFR 293 (355)
Q Consensus 220 ~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~~------g~~~~A~~~~~~~l~~~~~~~~ 293 (355)
...+....... .+.................++..+|...... ++.++++..|+++++.+|....
T Consensus 224 ~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k 293 (352)
T PF02259_consen 224 NAELKSGLLES----------LEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEK 293 (352)
T ss_pred HHHHhhccccc----------cccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHH
Confidence 00010000000 0000000000000112234556666666666 8899999999999999999999
Q ss_pred HHHHHHHHHHHcCCH-----------------HHHHHHHHHHHHhCCC
Q 040440 294 PYLCQGIIYTLLRKK-----------------DEAEKQFEKFRRLVPR 324 (355)
Q Consensus 294 ~~~~l~~~~~~~g~~-----------------~~A~~~~~~~l~~~p~ 324 (355)
+|+.+|..+...=+. ..|+..|-+++...++
T Consensus 294 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 294 AWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK 341 (352)
T ss_pred HHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence 999988877654221 3466677777777665
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0076 Score=48.56 Aligned_cols=68 Identities=21% Similarity=0.171 Sum_probs=50.5
Q ss_pred chHHHHHHHHHHHHHccCHH-------HHHHHHHHHHHhCC------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 040440 256 DLRDFKLLIAQIKVMESKHS-------EALRVYEELVKEEP------RDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLV 322 (355)
Q Consensus 256 ~~~~~~~~la~~~~~~g~~~-------~A~~~~~~~l~~~~------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 322 (355)
....++..+|++|...|+.+ +|++.|+++++... +...+.+.+|.+..+.|++++|..+|.+++...
T Consensus 116 ~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 116 KKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 34556778899998888855 45555555554332 224678889999999999999999999998764
Q ss_pred C
Q 040440 323 P 323 (355)
Q Consensus 323 p 323 (355)
.
T Consensus 196 ~ 196 (214)
T PF09986_consen 196 K 196 (214)
T ss_pred C
Confidence 3
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0011 Score=36.42 Aligned_cols=24 Identities=13% Similarity=0.209 Sum_probs=12.5
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHH
Q 040440 152 LQTLMEVRIKSQKLVEAVDVIDRL 175 (355)
Q Consensus 152 ~~~la~~~~~~g~~~~A~~~~~~~ 175 (355)
+..+|.+|...|+|++|+++|+++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 445555555555555555555553
|
|
| >KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0005 Score=57.56 Aligned_cols=77 Identities=17% Similarity=0.116 Sum_probs=68.8
Q ss_pred HHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCc
Q 040440 156 MEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDK 232 (355)
Q Consensus 156 a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 232 (355)
+.-.+..|++++|++.|..++.++|.....+...+.++.++++...|+..+..+++++|+...-|-..+......|+
T Consensus 121 A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~ 197 (377)
T KOG1308|consen 121 ASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGN 197 (377)
T ss_pred HHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhc
Confidence 33455778999999999999999999999999999999999999999999999999999988887777777777777
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.16 Score=43.03 Aligned_cols=156 Identities=15% Similarity=0.091 Sum_probs=97.8
Q ss_pred HHccCHHHHHHHHHHHHHcC----CCch----HHHHHHHHHHHHcC-CHHHHHHHHHHHHhh----CC---CC-------
Q 040440 160 IKSQKLVEAVDVIDRLIELE----PNEF----EWQLLKAQVQSYAG-ESEAAIKGFEEILRK----DP---LR------- 216 (355)
Q Consensus 160 ~~~g~~~~A~~~~~~~~~~~----~~~~----~~~~~la~~~~~~g-~~~~A~~~~~~~~~~----~p---~~------- 216 (355)
++.|+++.|..++.|+-... |+.. ..+++.|......+ ++++|..+++++.+. .+ ..
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 56788888888888875543 3222 24667777777788 888888888888877 21 11
Q ss_pred HHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC---CCh
Q 040440 217 VEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEP---RDF 292 (355)
Q Consensus 217 ~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~---~~~ 292 (355)
..++..++.+|...+. . ...++|..+++. ....++.+.++...-.+..+.++.+.+.+.+.+++...+ .+.
T Consensus 84 ~~iL~~La~~~l~~~~-~----~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~ 158 (278)
T PF08631_consen 84 LSILRLLANAYLEWDT-Y----ESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNF 158 (278)
T ss_pred HHHHHHHHHHHHcCCC-h----HHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchH
Confidence 2345677888877765 2 235666666666 344555566665555666668999999999999988654 122
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 040440 293 RPYLCQGIIYTLLRKKDEAEKQFEKFRRL 321 (355)
Q Consensus 293 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 321 (355)
........-+.. .....|...+...+..
T Consensus 159 ~~~l~~i~~l~~-~~~~~a~~~ld~~l~~ 186 (278)
T PF08631_consen 159 DSILHHIKQLAE-KSPELAAFCLDYLLLN 186 (278)
T ss_pred HHHHHHHHHHHh-hCcHHHHHHHHHHHHH
Confidence 222222222222 2345666777666543
|
It is also involved in sporulation []. |
| >PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ] | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.1 Score=45.80 Aligned_cols=141 Identities=16% Similarity=0.096 Sum_probs=102.2
Q ss_pred HHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--------------------------CCCHHH---HHHHHHH
Q 040440 176 IELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKD--------------------------PLRVEA---YHGLVMA 226 (355)
Q Consensus 176 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--------------------------p~~~~~---~~~l~~~ 226 (355)
++.+|.+.+.+..++.++..+|+.+.|.+.+++++-.. +.|... .+.....
T Consensus 33 l~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~ 112 (360)
T PF04910_consen 33 LQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQS 112 (360)
T ss_pred HHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHH
Confidence 45689999999999999999999999999999886321 122222 3344555
Q ss_pred HhccCchHHHHHHHHHHHHHHHHh-hccCCc-hHHH-HHHHHHHHHHccCHHHHHHHHHHHHHhCCC-----ChHHHHHH
Q 040440 227 YDGSDKKLNEVEKRIEKAMERCKK-EKKKSD-LRDF-KLLIAQIKVMESKHSEALRVYEELVKEEPR-----DFRPYLCQ 298 (355)
Q Consensus 227 ~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~-~~~~-~~~la~~~~~~g~~~~A~~~~~~~l~~~~~-----~~~~~~~l 298 (355)
..+.|- +..|+++++- ...+|. ++-. ++.+-....+.++|+--++.++........ -+..-+..
T Consensus 113 L~~RG~--------~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~ 184 (360)
T PF04910_consen 113 LGRRGC--------WRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSI 184 (360)
T ss_pred HHhcCc--------HHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHH
Confidence 666666 9999999988 444554 4444 444444556778888888888876652111 23566778
Q ss_pred HHHHHHcCCH---------------HHHHHHHHHHHHhCCC
Q 040440 299 GIIYTLLRKK---------------DEAEKQFEKFRRLVPR 324 (355)
Q Consensus 299 ~~~~~~~g~~---------------~~A~~~~~~~l~~~p~ 324 (355)
+.++...++. ++|...+++++...|.
T Consensus 185 aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~ 225 (360)
T PF04910_consen 185 ALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPW 225 (360)
T ss_pred HHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHH
Confidence 8888888888 8999999999998885
|
Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions []. |
| >KOG2300 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.23 Score=44.26 Aligned_cols=189 Identities=15% Similarity=0.115 Sum_probs=129.5
Q ss_pred CHHHHHHHHHHHHHcC---CC---CH--------HHHHHHHHHHHHccCHHHHHHHHHHHHHc---CCC-------chHH
Q 040440 130 SYEEKEKEIEQHLAAN---PN---DI--------EALQTLMEVRIKSQKLVEAVDVIDRLIEL---EPN-------EFEW 185 (355)
Q Consensus 130 ~~~~A~~~~~~~l~~~---p~---~~--------~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~~~-------~~~~ 185 (355)
-+++|.++-++++... +. .. ..+..++.+-.-.|++.+|++....+.+. .|. ....
T Consensus 290 y~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~i 369 (629)
T KOG2300|consen 290 YFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQI 369 (629)
T ss_pred HHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHH
Confidence 4666777666666421 11 11 23445666777889999999988887664 333 2345
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CH--HHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCC-----ch
Q 040440 186 QLLKAQVQSYAGESEAAIKGFEEILRKDPL-RV--EAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKS-----DL 257 (355)
Q Consensus 186 ~~~la~~~~~~g~~~~A~~~~~~~~~~~p~-~~--~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~-----~~ 257 (355)
...+|......|.++.|...|..+.+.-.. +. ....+++..|.+.++ ...+.++++.+...+..+ ..
T Consensus 370 h~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~-----~ed~y~~ld~i~p~nt~s~ssq~l~ 444 (629)
T KOG2300|consen 370 HMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGD-----AEDLYKALDLIGPLNTNSLSSQRLE 444 (629)
T ss_pred HHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhcc-----HHHHHHHHHhcCCCCCCcchHHHHH
Confidence 777888888889999999999999987432 22 234578888988877 112344444433222222 12
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-C-----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 040440 258 RDFKLLIAQIKVMESKHSEALRVYEELVKEEPR-D-----FRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVP 323 (355)
Q Consensus 258 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~-~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p 323 (355)
..+++..|...+.++++.+|...+.+.++.... + .-.+..++.+....|+..++.+...-++++..
T Consensus 445 a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAk 516 (629)
T KOG2300|consen 445 ASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAK 516 (629)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHh
Confidence 345777788889999999999999999987531 1 22456678889999999999999888877653
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.28 Score=44.85 Aligned_cols=191 Identities=12% Similarity=0.077 Sum_probs=136.5
Q ss_pred CHHHHHHHHHHHHHc-----CC---CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHH
Q 040440 130 SYEEKEKEIEQHLAA-----NP---NDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEA 201 (355)
Q Consensus 130 ~~~~A~~~~~~~l~~-----~p---~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 201 (355)
...+.+-.++..+.. .| .+...|......-...|+++...-.|++++--.......|...+......|+.+-
T Consensus 270 ~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~ 349 (577)
T KOG1258|consen 270 EEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSL 349 (577)
T ss_pred hHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhH
Confidence 344444555555442 22 3456677777888899999999999999998777888899999998889999999
Q ss_pred HHHHHHHHHhhC-CCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHHHccCHHHHHH
Q 040440 202 AIKGFEEILRKD-PLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQIKVMESKHSEALR 279 (355)
Q Consensus 202 A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 279 (355)
|...+..+.+.. +..+.....-+......|+ +..|..+++. ....|....+-...+.....+|+.+.+..
T Consensus 350 ~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n--------~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~ 421 (577)
T KOG1258|consen 350 ANNVLARACKIHVKKTPIIHLLEARFEESNGN--------FDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANY 421 (577)
T ss_pred HHHHHHhhhhhcCCCCcHHHHHHHHHHHhhcc--------HHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhH
Confidence 999988888875 5566666666666667777 8888888888 34447777777777788888999998884
Q ss_pred ---HHHHHHHhCCCC---hHHHHHHHH-HHHHcCCHHHHHHHHHHHHHhCCCChhH
Q 040440 280 ---VYEELVKEEPRD---FRPYLCQGI-IYTLLRKKDEAEKQFEKFRRLVPRNHPY 328 (355)
Q Consensus 280 ---~~~~~l~~~~~~---~~~~~~l~~-~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 328 (355)
.+.....-..+. ...+...+. .+.-.++.+.|...+.++++..|++...
T Consensus 422 ~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~ 477 (577)
T KOG1258|consen 422 KNELYSSIYEGKENNGILEKLYVKFARLRYKIREDADLARIILLEANDILPDCKVL 477 (577)
T ss_pred HHHHHHHhcccccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccHHH
Confidence 333322211111 122333333 3445688999999999999999987443
|
|
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.0059 Score=36.70 Aligned_cols=36 Identities=28% Similarity=0.241 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHH
Q 040440 151 ALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQ 186 (355)
Q Consensus 151 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 186 (355)
.++.+|..+++.|+|++|..+.+.+++.+|++..+.
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~ 38 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQ 38 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHH
Confidence 345555555555555555555555555555555443
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.26 Score=47.23 Aligned_cols=191 Identities=17% Similarity=0.142 Sum_probs=116.4
Q ss_pred hccCCHHHHHHHHHHHHHcCCCC-----HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCC----CchH--HHHHHHHHHH
Q 040440 126 REDVSYEEKEKEIEQHLAANPND-----IEALQTLMEVRIKSQKLVEAVDVIDRLIELEP----NEFE--WQLLKAQVQS 194 (355)
Q Consensus 126 ~~~~~~~~A~~~~~~~l~~~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~----~~~~--~~~~la~~~~ 194 (355)
..++++++|++..+.++..-|.+ ..++..+|.+..-.|++++|+.+...+.+... ..-. +....+.++.
T Consensus 469 l~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~ 548 (894)
T COG2909 469 LNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILE 548 (894)
T ss_pred HhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence 34459999999999999877664 56778899999999999999999998877622 2222 2334467778
Q ss_pred HcCC--HHHHHHHHHHHHhh----CCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHH-HHHHHHHH
Q 040440 195 YAGE--SEAAIKGFEEILRK----DPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRD-FKLLIAQI 267 (355)
Q Consensus 195 ~~g~--~~~A~~~~~~~~~~----~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~-~~~~la~~ 267 (355)
.+|+ +.+....|...-.. .|.........+.++...-+ .+.+......++++.......+.... ..+.++.+
T Consensus 549 ~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r-~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l 627 (894)
T COG2909 549 AQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLR-LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAEL 627 (894)
T ss_pred HhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHH-HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHH
Confidence 8883 33333444333322 23322233333333332222 33333334444544444333333333 34589999
Q ss_pred HHHccCHHHHHHHHHHHHHhCCCC-hH-HH-----HHHHHHHHHcCCHHHHHHHHHH
Q 040440 268 KVMESKHSEALRVYEELVKEEPRD-FR-PY-----LCQGIIYTLLRKKDEAEKQFEK 317 (355)
Q Consensus 268 ~~~~g~~~~A~~~~~~~l~~~~~~-~~-~~-----~~l~~~~~~~g~~~~A~~~~~~ 317 (355)
++..|++++|...+.++...-... .. .| ..........|+.++|.....+
T Consensus 628 ~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 628 EFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence 999999999999999987653322 11 11 1122233467888888888777
|
|
| >KOG2300 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.27 Score=43.77 Aligned_cols=179 Identities=12% Similarity=0.027 Sum_probs=115.5
Q ss_pred ccCCHHHHHHHHHHHHH---cCCC-------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC-chH--HHHHHHHHH
Q 040440 127 EDVSYEEKEKEIEQHLA---ANPN-------DIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPN-EFE--WQLLKAQVQ 193 (355)
Q Consensus 127 ~~~~~~~A~~~~~~~l~---~~p~-------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~--~~~~la~~~ 193 (355)
-.+++.+|++....+.+ ..|. .+.....+|......|.++.|...|..+.+.... +.. ...++|..|
T Consensus 335 v~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~Y 414 (629)
T KOG2300|consen 335 VRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISY 414 (629)
T ss_pred HhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHH
Confidence 34588888887777765 4555 2456677888888889999999999999876432 222 456788999
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCC----------HHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-------hccCCc
Q 040440 194 SYAGESEAAIKGFEEILRKDPLR----------VEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-------EKKKSD 256 (355)
Q Consensus 194 ~~~g~~~~A~~~~~~~~~~~p~~----------~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-------~~~~~~ 256 (355)
.+.|+-+.-.+.++. +.|.+ ..+++..|...+..++ +.+|...+.+ .....-
T Consensus 415 L~~~~~ed~y~~ld~---i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~--------lnEaK~~l~e~Lkmanaed~~rL 483 (629)
T KOG2300|consen 415 LRIGDAEDLYKALDL---IGPLNTNSLSSQRLEASILYVYGLFAFKQND--------LNEAKRFLRETLKMANAEDLNRL 483 (629)
T ss_pred HHhccHHHHHHHHHh---cCCCCCCcchHHHHHHHHHHHHHHHHHHhcc--------HHHHHHHHHHHHhhcchhhHHHH
Confidence 998876554444433 34442 2345666666777777 5555555555 111222
Q ss_pred hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC---CCh---HHHHHHHHHHHHcCC--HHHHHHHHH
Q 040440 257 LRDFKLLIAQIKVMESKHSEALRVYEELVKEEP---RDF---RPYLCQGIIYTLLRK--KDEAEKQFE 316 (355)
Q Consensus 257 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~---~~~---~~~~~l~~~~~~~g~--~~~A~~~~~ 316 (355)
..-.+..++.+....|+..++.+...-+++... +-+ +..-.+-.+|...|+ .++..+.+.
T Consensus 484 ~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~Di~vqLws~si~~~L~~a~g~~~~~~e~e~~~ 551 (629)
T KOG2300|consen 484 TACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPDIPVQLWSSSILTDLYQALGEKGNEMENEAFR 551 (629)
T ss_pred HHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcCCCchHHHHHHHHHHHHHHHhCcchhhHHHHHHH
Confidence 233467788899999999999999888876543 322 222345567777777 444444444
|
|
| >KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.043 Score=39.79 Aligned_cols=81 Identities=14% Similarity=0.095 Sum_probs=63.5
Q ss_pred CchHHHHHHHHHHHHHcc---CHHHHHHHHHHHHH-hCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHH
Q 040440 255 SDLRDFKLLIAQIKVMES---KHSEALRVYEELVK-EEPR-DFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHPYR 329 (355)
Q Consensus 255 ~~~~~~~~~la~~~~~~g---~~~~A~~~~~~~l~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~ 329 (355)
.......+++++++.... +..+.+.+++..++ -+|. ..+..+.++..+++.|+|++++.+.+..++..|+|.+..
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~ 108 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQAL 108 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHH
Confidence 344566788888888654 46678999999996 4443 456788999999999999999999999999999997765
Q ss_pred HHHHHH
Q 040440 330 EYFVDN 335 (355)
Q Consensus 330 ~~~~~~ 335 (355)
.+-..+
T Consensus 109 ~Lk~~i 114 (149)
T KOG3364|consen 109 ELKETI 114 (149)
T ss_pred HHHHHH
Confidence 544333
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.022 Score=44.52 Aligned_cols=62 Identities=21% Similarity=0.163 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC---chHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 040440 150 EALQTLMEVRIKSQKLVEAVDVIDRLIELEPN---EFEWQLLKAQVQSYAGESEAAIKGFEEILR 211 (355)
Q Consensus 150 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 211 (355)
.++..+|..|.+.|+.++|++.|.++.+.... ..+.++.+..+....|++.....+..++-.
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34555555555555555555555555443221 122344444555555555555555554443
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.11 Score=38.65 Aligned_cols=78 Identities=17% Similarity=0.196 Sum_probs=60.3
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCc
Q 040440 155 LMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDK 232 (355)
Q Consensus 155 la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 232 (355)
....-...++.+++..+++.+--+.|+....-..-|.++...|+|.+|+.++++..+..+..+...-.++.|+...|+
T Consensus 16 ~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~D 93 (153)
T TIGR02561 16 VLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGD 93 (153)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCC
Confidence 333444578888888888888778888888888888888888888888888888887776667666677777777766
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.024 Score=52.66 Aligned_cols=146 Identities=19% Similarity=0.132 Sum_probs=72.9
Q ss_pred HHHHHHHHccCHHHHHHHHHHH------HHc----CCCch-HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---------
Q 040440 154 TLMEVRIKSQKLVEAVDVIDRL------IEL----EPNEF-EWQLLKAQVQSYAGESEAAIKGFEEILRKD--------- 213 (355)
Q Consensus 154 ~la~~~~~~g~~~~A~~~~~~~------~~~----~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--------- 213 (355)
..|.+|-+..++++|+++|++. +++ .|... ..--..|.-+.+.|+++.|+..|-++-...
T Consensus 666 kagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~~~~kaieaai~a 745 (1636)
T KOG3616|consen 666 KAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCLIKAIEAAIGA 745 (1636)
T ss_pred hhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHHHHHHHHhhh
Confidence 3455555666777788777653 322 23221 122234566677788888877765432110
Q ss_pred ---C------------CC-HHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHccCHHHH
Q 040440 214 ---P------------LR-VEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSEA 277 (355)
Q Consensus 214 ---p------------~~-~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 277 (355)
| +. ...|-.++..|...|+ |+.|.+++.+.... ..-..+|.+.|+|++|
T Consensus 746 kew~kai~ildniqdqk~~s~yy~~iadhyan~~d--------fe~ae~lf~e~~~~-------~dai~my~k~~kw~da 810 (1636)
T KOG3616|consen 746 KEWKKAISILDNIQDQKTASGYYGEIADHYANKGD--------FEIAEELFTEADLF-------KDAIDMYGKAGKWEDA 810 (1636)
T ss_pred hhhhhhHhHHHHhhhhccccccchHHHHHhccchh--------HHHHHHHHHhcchh-------HHHHHHHhccccHHHH
Confidence 0 00 0012223333444444 44444444432111 1123445555566555
Q ss_pred HHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHH
Q 040440 278 LRVYEELVKEEPR-DFRPYLCQGIIYTLLRKKDEAEKQFE 316 (355)
Q Consensus 278 ~~~~~~~l~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~ 316 (355)
.+.-+++. .|. ....|...+.-+-+.|++.+|.+.|-
T Consensus 811 ~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyi 848 (1636)
T KOG3616|consen 811 FKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYI 848 (1636)
T ss_pred HHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeE
Confidence 55555542 222 23455666677778888888887763
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.027 Score=52.44 Aligned_cols=169 Identities=16% Similarity=0.127 Sum_probs=107.1
Q ss_pred hccC-CHHHHHHHHHHH------HH----cCCCCHH-HHHHHHHHHHHccCHHHHHHHHHHHH------Hc---------
Q 040440 126 REDV-SYEEKEKEIEQH------LA----ANPNDIE-ALQTLMEVRIKSQKLVEAVDVIDRLI------EL--------- 178 (355)
Q Consensus 126 ~~~~-~~~~A~~~~~~~------l~----~~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~~~------~~--------- 178 (355)
|++. ++++|+++|++. ++ ..|..+. .-..-|.-+.+.|+++.|+..|-++- +.
T Consensus 671 feki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~~~~kaieaai~akew~k 750 (1636)
T KOG3616|consen 671 FEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCLIKAIEAAIGAKEWKK 750 (1636)
T ss_pred HHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHHHHHHHHhhhhhhhh
Confidence 5555 777787777653 22 1333222 12234555556677777766654421 10
Q ss_pred ---------CCC-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHH
Q 040440 179 ---------EPN-EFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERC 248 (355)
Q Consensus 179 ---------~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~ 248 (355)
+.+ ....|-.++.-|...|+|+.|.++|.++-. ...-...|.+.|+ ++.|.++.
T Consensus 751 ai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~~--------~~dai~my~k~~k--------w~da~kla 814 (1636)
T KOG3616|consen 751 AISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEADL--------FKDAIDMYGKAGK--------WEDAFKLA 814 (1636)
T ss_pred hHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcch--------hHHHHHHHhcccc--------HHHHHHHH
Confidence 011 111355677888889999999988876532 2223556777888 88888888
Q ss_pred HhhccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 040440 249 KKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKF 318 (355)
Q Consensus 249 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 318 (355)
++..........+...+.-+-+.|+|.+|.+.|-.. ..|+ .-...|-+.|.+++.+...++.
T Consensus 815 ~e~~~~e~t~~~yiakaedldehgkf~eaeqlyiti--~~p~------~aiqmydk~~~~ddmirlv~k~ 876 (1636)
T KOG3616|consen 815 EECHGPEATISLYIAKAEDLDEHGKFAEAEQLYITI--GEPD------KAIQMYDKHGLDDDMIRLVEKH 876 (1636)
T ss_pred HHhcCchhHHHHHHHhHHhHHhhcchhhhhheeEEc--cCch------HHHHHHHhhCcchHHHHHHHHh
Confidence 876666666677888888888999999999888543 1232 1245778888888887776653
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.14 Score=49.68 Aligned_cols=61 Identities=16% Similarity=0.157 Sum_probs=44.0
Q ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 040440 147 NDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRK 212 (355)
Q Consensus 147 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 212 (355)
+.+.+|..+|.+..+.|...+|++-|-++ +++..|.....+..+.|.|++-+.++.-+-+.
T Consensus 1102 n~p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk 1162 (1666)
T KOG0985|consen 1102 NEPAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKK 1162 (1666)
T ss_pred CChHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 44667778888888888888888777653 45666777777777788888877777666554
|
|
| >PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.016 Score=39.43 Aligned_cols=65 Identities=17% Similarity=0.253 Sum_probs=49.6
Q ss_pred HHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHhccCc
Q 040440 168 AVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLR--VEAYHGLVMAYDGSDK 232 (355)
Q Consensus 168 A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~--~~~~~~l~~~~~~~~~ 232 (355)
.+..+++.++.+|++..+.+.++..+...|++++|++.+-++++.+++. ..+...+..++...|.
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 4567788899999999999999999999999999999999999998754 4555555555555544
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.018 Score=43.40 Aligned_cols=85 Identities=15% Similarity=0.015 Sum_probs=71.8
Q ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHH
Q 040440 129 VSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEE 208 (355)
Q Consensus 129 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 208 (355)
.+.+++..+++.+--..|+.++.-..-|..++..|+|.+|+.+++.+.+..|..+..--.++.|+...|+.+= ..+-++
T Consensus 24 ~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~W-r~~A~e 102 (160)
T PF09613_consen 24 GDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPSW-RRYADE 102 (160)
T ss_pred CChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChHH-HHHHHH
Confidence 3778889999988889999999999999999999999999999999999899998888899999998888652 233445
Q ss_pred HHhhCC
Q 040440 209 ILRKDP 214 (355)
Q Consensus 209 ~~~~~p 214 (355)
+++..+
T Consensus 103 vle~~~ 108 (160)
T PF09613_consen 103 VLESGA 108 (160)
T ss_pred HHhcCC
Confidence 555443
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.15 Score=38.89 Aligned_cols=120 Identities=11% Similarity=0.085 Sum_probs=65.4
Q ss_pred HHHccCHHHHHHHHHHHHHcCCCc--hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--CH--HHHHHHHHHHhccCc
Q 040440 159 RIKSQKLVEAVDVIDRLIELEPNE--FEWQLLKAQVQSYAGESEAAIKGFEEILRKDPL--RV--EAYHGLVMAYDGSDK 232 (355)
Q Consensus 159 ~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~--~~--~~~~~l~~~~~~~~~ 232 (355)
+.+.+..++|+..|..+-+..-.. .-+.+..+.+..+.|+-.+|+..|.++-.-.+- -. .+...-+.++...|.
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcccc
Confidence 445677788888887766543322 235666777888888888888888887664321 11 122233334444444
Q ss_pred hHHHHHHHHHHHHHHHHh--hccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 040440 233 KLNEVEKRIEKAMERCKK--EKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVK 286 (355)
Q Consensus 233 ~~~~a~~~~~~Al~~~~~--~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 286 (355)
|+......+. ....+-.....-.||..-++.|++.+|...|.++..
T Consensus 148 --------y~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 148 --------YDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred --------HHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 4444444444 222333333444455555555555555555555443
|
|
| >PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.024 Score=39.70 Aligned_cols=87 Identities=13% Similarity=0.193 Sum_probs=51.4
Q ss_pred HHHHHHccCHHHHHHHHHHHHHcCCCchH---HHHHHHHHHHHcCC-----------HHHHHHHHHHHHhhCCCCHHHHH
Q 040440 156 MEVRIKSQKLVEAVDVIDRLIELEPNEFE---WQLLKAQVQSYAGE-----------SEAAIKGFEEILRKDPLRVEAYH 221 (355)
Q Consensus 156 a~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~la~~~~~~g~-----------~~~A~~~~~~~~~~~p~~~~~~~ 221 (355)
+..++..|++-+|+++.+..+...+++.. .+..-|.++..+.. .-.+++.|.++..+.|.....++
T Consensus 3 A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L~ 82 (111)
T PF04781_consen 3 AKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSLF 82 (111)
T ss_pred HHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHHH
Confidence 44566666677777776666666555442 33344444433321 23567778888888888877777
Q ss_pred HHHHHHhccCchHHHHHHHHHHHHHHHHh
Q 040440 222 GLVMAYDGSDKKLNEVEKRIEKAMERCKK 250 (355)
Q Consensus 222 ~l~~~~~~~~~~~~~a~~~~~~Al~~~~~ 250 (355)
.+|.-+.... +|++++...++
T Consensus 83 ~la~~l~s~~--------~Ykk~v~kak~ 103 (111)
T PF04781_consen 83 ELASQLGSVK--------YYKKAVKKAKR 103 (111)
T ss_pred HHHHHhhhHH--------HHHHHHHHHHH
Confidence 7765543332 26666665555
|
|
| >KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.011 Score=53.36 Aligned_cols=100 Identities=13% Similarity=0.045 Sum_probs=89.0
Q ss_pred CCHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHH
Q 040440 129 VSYEEKEKEIEQHLAANPND-IEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFE 207 (355)
Q Consensus 129 ~~~~~A~~~~~~~l~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 207 (355)
++...|+.++..++...|.. .....+++.+.++-|-..+|-.++.+++.+....+-.++.+|..+..+.+.++|++.|+
T Consensus 621 gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~ 700 (886)
T KOG4507|consen 621 GNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFR 700 (886)
T ss_pred CCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHH
Confidence 38899999999999988874 34578899999999999999999999999988788889999999999999999999999
Q ss_pred HHHhhCCCCHHHHHHHHHHHh
Q 040440 208 EILRKDPLRVEAYHGLVMAYD 228 (355)
Q Consensus 208 ~~~~~~p~~~~~~~~l~~~~~ 228 (355)
++++.+|+++..-..+-.+.+
T Consensus 701 ~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 701 QALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred HHHhcCCCChhhHHHHHHHHH
Confidence 999999999988776666555
|
|
| >KOG2422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.27 Score=44.74 Aligned_cols=158 Identities=16% Similarity=0.194 Sum_probs=105.4
Q ss_pred CHHHHHHHHHHHHHc------------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHc-------------------
Q 040440 130 SYEEKEKEIEQHLAA------------NPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIEL------------------- 178 (355)
Q Consensus 130 ~~~~A~~~~~~~l~~------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~------------------- 178 (355)
.|+++...|.-+... .|-+++.+..++.+...+|+.+.|....++++=.
T Consensus 253 sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~ 332 (665)
T KOG2422|consen 253 SYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLP 332 (665)
T ss_pred HHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCc
Confidence 577787777777553 4566889999999999999999888888877532
Q ss_pred --CCCchHHH---HHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhc
Q 040440 179 --EPNEFEWQ---LLKAQVQSYAGESEAAIKGFEEILRKDPL-RVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEK 252 (355)
Q Consensus 179 --~~~~~~~~---~~la~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~ 252 (355)
.|.+...| +..-..+.+.|-+..|.++++-++.++|. ++.....+..+|.-..+.+.-.+...++. +...++.
T Consensus 333 y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~-e~~n~l~ 411 (665)
T KOG2422|consen 333 YIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEP-ENMNKLS 411 (665)
T ss_pred ccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHH-HhhccHh
Confidence 22222222 22234456789999999999999999998 88888888877765554333333322222 1111111
Q ss_pred cCCchHHHHHHHHHHHHHccC---HHHHHHHHHHHHHhCC
Q 040440 253 KKSDLRDFKLLIAQIKVMESK---HSEALRVYEELVKEEP 289 (355)
Q Consensus 253 ~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~~l~~~~ 289 (355)
.. .+..+-..+|.+|..... -+.|...+.+++...|
T Consensus 412 ~~-PN~~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P 450 (665)
T KOG2422|consen 412 QL-PNFGYSLALARFFLRKNEEDDRQSALNALLQALKHHP 450 (665)
T ss_pred hc-CCchHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCc
Confidence 11 223445667777777665 6788889999988776
|
|
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.035 Score=49.30 Aligned_cols=81 Identities=9% Similarity=0.090 Sum_probs=70.5
Q ss_pred ccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCChhHHH
Q 040440 252 KKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRK-KDEAEKQFEKFRRLVPRNHPYRE 330 (355)
Q Consensus 252 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~l~~~p~~~~~~~ 330 (355)
...+.+..+|........+.+.+.+--.+|.+++..+|++++.|..-+.-.+..+. .+.|...|.+++..+|+.+....
T Consensus 99 ~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npdsp~Lw~ 178 (568)
T KOG2396|consen 99 NRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDSPKLWK 178 (568)
T ss_pred HhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCChHHHH
Confidence 44566888999988888888889999999999999999999999999988877776 99999999999999999876654
Q ss_pred HH
Q 040440 331 YF 332 (355)
Q Consensus 331 ~~ 332 (355)
.+
T Consensus 179 ey 180 (568)
T KOG2396|consen 179 EY 180 (568)
T ss_pred HH
Confidence 43
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.1 Score=46.36 Aligned_cols=164 Identities=10% Similarity=-0.051 Sum_probs=106.7
Q ss_pred cchHHHHHHHHHHHHhccccccccCcccccccccccccccchhhhhhhhhhhccCCHHHHHHHHHHHHHcCCCCHHHHHH
Q 040440 75 LIKITSVTVAAAALLFMRLPFHSIKPAIAAPVAAAATVESTNESTKDTTSAREDVSYEEKEKEIEQHLAANPNDIEALQT 154 (355)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~ 154 (355)
.+++.+--..++.+|.+......+ -...+. .|.++..-.....+..+...+|.-.|-+.+..++...|.+++....
T Consensus 253 HYTP~Fa~~iv~~~fkg~in~~~~--~~d~~~--q~~~~~~~~~~~si~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l 328 (831)
T PRK15180 253 HYTDMFGDAIVAAIFKGVINNTNH--HLDEGR--QEKQDQIREITLSITKQLADGDIIAASQQLFAALRNQQQDPVLIQL 328 (831)
T ss_pred cCChHHHHHHHHHHHhcccCCccc--cccccc--CcCCcchhHHHHHHHHHhhccCHHHHHHHHHHHHHhCCCCchhhHH
Confidence 455555556666666665432111 111111 1222222232333334566779999999999999999999999999
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchH
Q 040440 155 LMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKL 234 (355)
Q Consensus 155 la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 234 (355)
.+.+....|+|+.+...+..+-..-.....+...+-.....+|++++|....+-++...-+++++...-+...
T Consensus 329 ~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa------- 401 (831)
T PRK15180 329 RSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIEDEEVLTVAAGSA------- 401 (831)
T ss_pred HHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccCChhheeeecccH-------
Confidence 9999999999999999887665543444445555666678899999999988888876666666543222222
Q ss_pred HHHHHHHHHHHHHHHh
Q 040440 235 NEVEKRIEKAMERCKK 250 (355)
Q Consensus 235 ~~a~~~~~~Al~~~~~ 250 (355)
.+++++++++..+++
T Consensus 402 -~~l~~~d~~~~~wk~ 416 (831)
T PRK15180 402 -DALQLFDKSYHYWKR 416 (831)
T ss_pred -HHHhHHHHHHHHHHH
Confidence 233447777777776
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.4 Score=43.08 Aligned_cols=187 Identities=16% Similarity=0.057 Sum_probs=124.9
Q ss_pred hccC-CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHH
Q 040440 126 REDV-SYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIK 204 (355)
Q Consensus 126 ~~~~-~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 204 (355)
+.+. ++.-...++.+++... ++-.+++.++.+|... ..++-..++++.++.+-++...-..++..|.+ ++...+..
T Consensus 76 f~~n~k~~~veh~c~~~l~~~-e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~yEk-ik~sk~a~ 152 (711)
T COG1747 76 FGDNHKNQIVEHLCTRVLEYG-ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKYEK-IKKSKAAE 152 (711)
T ss_pred hccchHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHHHH-hchhhHHH
Confidence 4445 6667778888888865 5567789999999988 66788899999999988888888888886665 89999999
Q ss_pred HHHHHHhhC-C--CC---HHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhcc--CCchHHH-HHHHHHHHHHccCHH
Q 040440 205 GFEEILRKD-P--LR---VEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKK--KSDLRDF-KLLIAQIKVMESKHS 275 (355)
Q Consensus 205 ~~~~~~~~~-p--~~---~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~--~~~~~~~-~~~la~~~~~~g~~~ 275 (355)
+|.+++... | .+ .++|..+... .|++ .+.-+.+..+... ......+ +..+-.-|....++.
T Consensus 153 ~f~Ka~yrfI~~~q~~~i~evWeKL~~~---i~dD-------~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~ 222 (711)
T COG1747 153 FFGKALYRFIPRRQNAAIKEVWEKLPEL---IGDD-------KDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENWT 222 (711)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHHh---cccc-------HHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCHH
Confidence 999998763 2 12 2334333221 2221 3333333333111 1111222 223334566778999
Q ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHH--------------------cCCHHHHHHHHHHHHHhCCCC
Q 040440 276 EALRVYEELVKEEPRDFRPYLCQGIIYTL--------------------LRKKDEAEKQFEKFRRLVPRN 325 (355)
Q Consensus 276 ~A~~~~~~~l~~~~~~~~~~~~l~~~~~~--------------------~g~~~~A~~~~~~~l~~~p~~ 325 (355)
+|++++...++.+..+.++.-++...+.. -.++.+++.-|++.+..+..+
T Consensus 223 eai~Ilk~il~~d~k~~~ar~~~i~~lRd~y~~~~~~e~yl~~s~i~~~~rnf~~~l~dFek~m~f~eGn 292 (711)
T COG1747 223 EAIRILKHILEHDEKDVWARKEIIENLRDKYRGHSQLEEYLKISNISQSGRNFFEALNDFEKLMHFDEGN 292 (711)
T ss_pred HHHHHHHHHhhhcchhhhHHHHHHHHHHHHhccchhHHHHHHhcchhhccccHHHHHHHHHHHheeccCc
Confidence 99999999999999888887777666655 345556666666665555444
|
|
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.0033 Score=32.96 Aligned_cols=32 Identities=31% Similarity=0.317 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 040440 293 RPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPR 324 (355)
Q Consensus 293 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~ 324 (355)
.++..+|.++..+|++++|...+++++++.|+
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 34566677777777777777777777666653
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.62 Score=44.44 Aligned_cols=185 Identities=10% Similarity=0.070 Sum_probs=108.8
Q ss_pred HHHHHHHHHHHHcCCC----CHHHHHHHHHHHH-HccCHHHHHHHHHHHHHcCCC--chH----HHHHHHHHHHHcCCHH
Q 040440 132 EEKEKEIEQHLAANPN----DIEALQTLMEVRI-KSQKLVEAVDVIDRLIELEPN--EFE----WQLLKAQVQSYAGESE 200 (355)
Q Consensus 132 ~~A~~~~~~~l~~~p~----~~~~~~~la~~~~-~~g~~~~A~~~~~~~~~~~~~--~~~----~~~~la~~~~~~g~~~ 200 (355)
.-|+++++-+++..+- ...++..+|.+++ ...+++.|..++++++.+... ..+ ..+.++.++.+.+...
T Consensus 38 ~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~ 117 (608)
T PF10345_consen 38 ATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA 117 (608)
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH
Confidence 4578888888852221 4567888999888 789999999999999877533 222 3556788888888777
Q ss_pred HHHHHHHHHHhhCCC----CHHHHHHHHHH--HhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHccCH
Q 040440 201 AAIKGFEEILRKDPL----RVEAYHGLVMA--YDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVMESKH 274 (355)
Q Consensus 201 ~A~~~~~~~~~~~p~----~~~~~~~l~~~--~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 274 (355)
|...+++.++.... .....+.+..+ +...++ ...|...+++............-...+....+.+....+..
T Consensus 118 -a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d-~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~ 195 (608)
T PF10345_consen 118 -ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKD-YNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSP 195 (608)
T ss_pred -HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhccc-HHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCc
Confidence 99999999987544 12222233222 222244 33333333333333221111111122233445666677878
Q ss_pred HHHHHHHHHHHHhCC----------CChHHHHHHHH--HHHHcCCHHHHHHHHHHH
Q 040440 275 SEALRVYEELVKEEP----------RDFRPYLCQGI--IYTLLRKKDEAEKQFEKF 318 (355)
Q Consensus 275 ~~A~~~~~~~l~~~~----------~~~~~~~~l~~--~~~~~g~~~~A~~~~~~~ 318 (355)
+++++..+++..... ....+|..+-. ++...|+++.+...+++.
T Consensus 196 ~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 196 DDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred hhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 888888888754221 12344444433 445677776776665554
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.28 Score=40.61 Aligned_cols=166 Identities=16% Similarity=0.150 Sum_probs=90.7
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHcCCC--------chHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCCHHHHH
Q 040440 155 LMEVRIKSQKLVEAVDVIDRLIELEPN--------EFEWQLLKAQVQSYAGESEAAIKGFEEILRK-----DPLRVEAYH 221 (355)
Q Consensus 155 la~~~~~~g~~~~A~~~~~~~~~~~~~--------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-----~p~~~~~~~ 221 (355)
++.-..+.+++++|+..|.+.+...-. .......++.+|...|++..-.+......+. .|.......
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kiir 88 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIR 88 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHH
Confidence 344444555666666666655543111 1123455666666666655433333222211 122223333
Q ss_pred HHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHh------CCCChHHH
Q 040440 222 GLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKE------EPRDFRPY 295 (355)
Q Consensus 222 ~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~------~~~~~~~~ 295 (355)
.+..-+-...+.++..+......+++..+.+..--...+-..++..+++.|+|.+|+......+.. .+.-..++
T Consensus 89 tLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vh 168 (421)
T COG5159 89 TLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVH 168 (421)
T ss_pred HHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehh
Confidence 333333333333444444455555555443333333445566788899999999999998877642 12335566
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Q 040440 296 LCQGIIYTLLRKKDEAEKQFEKFRR 320 (355)
Q Consensus 296 ~~l~~~~~~~g~~~~A~~~~~~~l~ 320 (355)
..-..+|....+..++..-+..+..
T Consensus 169 llESKvyh~irnv~KskaSLTaArt 193 (421)
T COG5159 169 LLESKVYHEIRNVSKSKASLTAART 193 (421)
T ss_pred hhhHHHHHHHHhhhhhhhHHHHHHH
Confidence 7777888888888877777766544
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.0043 Score=49.18 Aligned_cols=63 Identities=16% Similarity=0.171 Sum_probs=55.9
Q ss_pred HHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhH
Q 040440 266 QIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHPY 328 (355)
Q Consensus 266 ~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 328 (355)
....+.++.+.|.+.|.+++...|+....|+.+|....+.|+++.|.+.|++.++++|++...
T Consensus 3 ~~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~g 65 (287)
T COG4976 3 YMLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHGG 65 (287)
T ss_pred chhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccccc
Confidence 345667899999999999999999999999999999999999999999999999999987443
|
|
| >PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.35 Score=40.45 Aligned_cols=106 Identities=20% Similarity=0.153 Sum_probs=65.5
Q ss_pred CHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHccCHHHHHHHHHHH-----------
Q 040440 216 RVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEEL----------- 284 (355)
Q Consensus 216 ~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~----------- 284 (355)
+......++.+....+....+.....++|+...+.......++.++..+|..|.+.|++.+|..+|-..
T Consensus 48 ~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~l 127 (260)
T PF04190_consen 48 DEESIARLIELISLFPPEEPERKKFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVML 127 (260)
T ss_dssp SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHH
Confidence 333344455554444332333445577888887335556678899999999999999999998887321
Q ss_pred -----HHhCCCChHHHHHHH-HHHHHcCCHHHHHHHHHHHHHh
Q 040440 285 -----VKEEPRDFRPYLCQG-IIYTLLRKKDEAEKQFEKFRRL 321 (355)
Q Consensus 285 -----l~~~~~~~~~~~~l~-~~~~~~g~~~~A~~~~~~~l~~ 321 (355)
.+-.+.+...+...+ ..|...|+...|...+....+.
T Consensus 128 l~~~~~~~~~~e~dlfi~RaVL~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 128 LEEWSTKGYPSEADLFIARAVLQYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HHHHHHHTSS--HHHHHHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCcchhHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 123455555555554 4566789999999988877765
|
; PDB: 3LKU_E 2WPV_G. |
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.16 Score=47.60 Aligned_cols=151 Identities=18% Similarity=0.071 Sum_probs=109.2
Q ss_pred CHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHc-----CCHHHHHHHHHHHHhh-----CCCCHHHHHHHHHHHhccCch
Q 040440 164 KLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYA-----GESEAAIKGFEEILRK-----DPLRVEAYHGLVMAYDGSDKK 233 (355)
Q Consensus 164 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~-----g~~~~A~~~~~~~~~~-----~p~~~~~~~~l~~~~~~~~~~ 233 (355)
+...|..+++.+... .+..+...+|.+|..- .|.+.|+.+|+.+.+. .-.++.+.+.+|.+|......
T Consensus 227 ~~~~a~~~~~~~a~~--g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 227 ELSEAFKYYREAAKL--GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhhHHHHHHHHHHhh--cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCC
Confidence 356788888888754 4566777777776654 5899999999999771 122566788899999885421
Q ss_pred HHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHcc---CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc----C
Q 040440 234 LNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVMES---KHSEALRVYEELVKEEPRDFRPYLCQGIIYTLL----R 306 (355)
Q Consensus 234 ~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~----g 306 (355)
.. . .+++|+.++.+... ..++...+.+|.++.... ++..|.++|..+... .+..+.+.++.+|..- .
T Consensus 305 ~~-~--d~~~A~~~~~~aA~-~g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~G~gv~r 378 (552)
T KOG1550|consen 305 EK-I--DYEKALKLYTKAAE-LGNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALCYELGLGVER 378 (552)
T ss_pred cc-c--cHHHHHHHHHHHHh-cCCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHhCCCcCC
Confidence 11 0 36677777766222 234566777888887654 678999999998765 5778889999888643 4
Q ss_pred CHHHHHHHHHHHHHhC
Q 040440 307 KKDEAEKQFEKFRRLV 322 (355)
Q Consensus 307 ~~~~A~~~~~~~l~~~ 322 (355)
+.+.|..+++++.+..
T Consensus 379 ~~~~A~~~~k~aA~~g 394 (552)
T KOG1550|consen 379 NLELAFAYYKKAAEKG 394 (552)
T ss_pred CHHHHHHHHHHHHHcc
Confidence 7899999999998887
|
|
| >PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.093 Score=42.36 Aligned_cols=104 Identities=16% Similarity=0.103 Sum_probs=62.8
Q ss_pred HHHccCHHHHHHHHHHHHHc----CCC---chHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccC
Q 040440 159 RIKSQKLVEAVDVIDRLIEL----EPN---EFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSD 231 (355)
Q Consensus 159 ~~~~g~~~~A~~~~~~~~~~----~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 231 (355)
+.....+++|++.|.-++-. ..+ ....+..+|++|...|+.+....++++|++.
T Consensus 87 ~~~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~------------------- 147 (214)
T PF09986_consen 87 FSGERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEF------------------- 147 (214)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHH-------------------
Confidence 34456778888877766532 111 1234556666666666655544444444431
Q ss_pred chHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Q 040440 232 KKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPR 290 (355)
Q Consensus 232 ~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~ 290 (355)
|.+|.+.-......-+...+.+.+|.++.+.|++++|.++|.+++.....
T Consensus 148 ---------y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~ 197 (214)
T PF09986_consen 148 ---------YEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKA 197 (214)
T ss_pred ---------HHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCC
Confidence 33332221111122344567889999999999999999999999976543
|
|
| >COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.42 Score=40.83 Aligned_cols=133 Identities=15% Similarity=0.053 Sum_probs=92.6
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHcCCCc-hHHHHHHHHHHHHcC-------
Q 040440 130 SYEEKEKEIEQHLAANPNDIEALQTLMEVRIK----SQKLVEAVDVIDRLIELEPNE-FEWQLLKAQVQSYAG------- 197 (355)
Q Consensus 130 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~~~~~~-~~~~~~la~~~~~~g------- 197 (355)
+..+|...|+.+ .+..++.+.+.+|.+|.. ..|..+|..+|+++.+..-.. ......++.+|..-+
T Consensus 92 ~~~~A~~~~~~~--a~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~ 169 (292)
T COG0790 92 DKTKAADWYRCA--AADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAY 169 (292)
T ss_pred cHHHHHHHHHHH--hhcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccH
Confidence 688899999844 345678889999999987 559999999999999875443 344777887776541
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHcc
Q 040440 198 ESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVMES 272 (355)
Q Consensus 198 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~~g 272 (355)
+...|+..|.++-... +..+...++.+|..... +...+++|+..+.+.....+ ....+.++ ++...|
T Consensus 170 ~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~G----v~~d~~~A~~wy~~Aa~~g~-~~a~~~~~-~~~~~g 236 (292)
T COG0790 170 DDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLG----VPRDLKKAFRWYKKAAEQGD-GAACYNLG-LMYLNG 236 (292)
T ss_pred HHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCC----CCcCHHHHHHHHHHHHHCCC-HHHHHHHH-HHHhcC
Confidence 3347889998888765 78888889988865311 11126666666666333333 66677777 655555
|
|
| >KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.013 Score=48.60 Aligned_cols=65 Identities=23% Similarity=0.274 Sum_probs=31.7
Q ss_pred hccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHH
Q 040440 126 REDVSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKA 190 (355)
Q Consensus 126 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la 190 (355)
+..++.++|..+|+.++...|++++++..+|...-..++.-+|-.+|-+++..+|.+.+++.+.+
T Consensus 127 ~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~ 191 (472)
T KOG3824|consen 127 RKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRA 191 (472)
T ss_pred HhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhh
Confidence 33344455555555555555555555555555444444455555555555555554444444433
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.15 Score=39.86 Aligned_cols=82 Identities=18% Similarity=0.121 Sum_probs=62.3
Q ss_pred HHHHHHHHHhhccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---ChHHHHHHHHHHHHcCCHHHHHHHHHH
Q 040440 241 IEKAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPR---DFRPYLCQGIIYTLLRKKDEAEKQFEK 317 (355)
Q Consensus 241 ~~~Al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~ 317 (355)
++.-++-++...........+..+|..|.+.|++++|++.|.++.+.... -.+.++.+..+....|++..+..+..+
T Consensus 19 Le~elk~~~~n~~kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~k 98 (177)
T PF10602_consen 19 LEAELKDAKSNLGKESIRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEK 98 (177)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 44444444443444455667889999999999999999999998775432 246778888999999999999999998
Q ss_pred HHHhC
Q 040440 318 FRRLV 322 (355)
Q Consensus 318 ~l~~~ 322 (355)
+....
T Consensus 99 a~~~~ 103 (177)
T PF10602_consen 99 AESLI 103 (177)
T ss_pred HHHHH
Confidence 87764
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.24 Score=46.08 Aligned_cols=158 Identities=16% Similarity=0.117 Sum_probs=82.5
Q ss_pred HcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCc--------hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 040440 143 AANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNE--------FEWQLLKAQVQSYAGESEAAIKGFEEILRKDP 214 (355)
Q Consensus 143 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~--------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p 214 (355)
+.+| ++..|..++......-+++.|...|-+.-....-. ..--...+.+-..-|++++|.+.|-.+-+.+
T Consensus 687 EdnP-HprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrD- 764 (1189)
T KOG2041|consen 687 EDNP-HPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRD- 764 (1189)
T ss_pred hcCC-chHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhh-
Confidence 3344 68899999999888888888888877653221100 0001233445555688888888875543321
Q ss_pred CCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhc---cCCchHHHHHHHHHHHHHccCHHHHHHHHHHH-------
Q 040440 215 LRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEK---KKSDLRDFKLLIAQIKVMESKHSEALRVYEEL------- 284 (355)
Q Consensus 215 ~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~---~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~------- 284 (355)
.. ..++...|+ +-...++++... .+.....++..+|..+..+..|++|.++|.+.
T Consensus 765 --LA-----ielr~klgD--------wfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~e~~~ 829 (1189)
T KOG2041|consen 765 --LA-----IELRKKLGD--------WFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDTENQI 829 (1189)
T ss_pred --hh-----HHHHHhhhh--------HHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHhHH
Confidence 10 122223333 333334433311 11122233444444444444444444444322
Q ss_pred ---------------HHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHH
Q 040440 285 ---------------VKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEK 317 (355)
Q Consensus 285 ---------------l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 317 (355)
...-|++....-.+|..+...|.-++|.+.|-+
T Consensus 830 ecly~le~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr 877 (1189)
T KOG2041|consen 830 ECLYRLELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLR 877 (1189)
T ss_pred HHHHHHHhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHh
Confidence 122355556666677777777777766665543
|
|
| >PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.13 Score=36.45 Aligned_cols=66 Identities=17% Similarity=0.125 Sum_probs=31.3
Q ss_pred HHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hccCCch----HHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 040440 220 YHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDL----RDFKLLIAQIKVMESKHSEALRVYEELVK 286 (355)
Q Consensus 220 ~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~----~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 286 (355)
+-.|+..+...|+ +++++..-++|+.+|.+ ...+.+. ..+.+..+..+...|+.++|+..|+.+-+
T Consensus 58 hA~Ls~A~~~Lgr-y~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agE 128 (144)
T PF12968_consen 58 HAGLSGALAGLGR-YDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGE 128 (144)
T ss_dssp HHHHHHHHHHTT--HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcc-HHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 3445555555555 44444444444444444 1112222 22234445556666777777777766544
|
The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D. |
| >PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.13 Score=36.46 Aligned_cols=64 Identities=13% Similarity=0.126 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHH-------hCCCChHHH----HHHHHHHHHcCCHHHHHHHHHHHHHh
Q 040440 258 RDFKLLIAQIKVMESKHSEALRVYEELVK-------EEPRDFRPY----LCQGIIYTLLRKKDEAEKQFEKFRRL 321 (355)
Q Consensus 258 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~-------~~~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~l~~ 321 (355)
.-.+..|+..+..+|+|++++...++++. ++.+....| +..+..+...|+.++|+..|+.+-+.
T Consensus 55 A~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 55 AFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 44566778888999999988877777764 444444444 56788899999999999999988654
|
The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D. |
| >KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.013 Score=48.58 Aligned_cols=60 Identities=17% Similarity=0.232 Sum_probs=55.4
Q ss_pred HHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChh
Q 040440 268 KVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHP 327 (355)
Q Consensus 268 ~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 327 (355)
..+.|+.++|...|+.++.+.|++++++..+|......++.-+|-.+|-+++.+.|.+..
T Consensus 126 ~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nse 185 (472)
T KOG3824|consen 126 SRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSE 185 (472)
T ss_pred HHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchH
Confidence 356799999999999999999999999999999999999999999999999999998844
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.026 Score=49.90 Aligned_cols=125 Identities=15% Similarity=0.021 Sum_probs=91.7
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhh-ccCCchHHHHHHHHHHHHHc
Q 040440 193 QSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKE-KKKSDLRDFKLLIAQIKVME 271 (355)
Q Consensus 193 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~-~~~~~~~~~~~~la~~~~~~ 271 (355)
.+..|+.-.|-.-...++...|.++......+.+....|+ |+.++..+... ............+-+...+.
T Consensus 299 ~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~--------ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l 370 (831)
T PRK15180 299 QLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGY--------YEQAYQDISDVEKIIGTTDSTLRCRLRSLHGL 370 (831)
T ss_pred HhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhh--------HHHHHHHhhchhhhhcCCchHHHHHHHhhhch
Confidence 3456788788888888888888888888888888888887 77777766552 11222223344455666778
Q ss_pred cCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 040440 272 SKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRN 325 (355)
Q Consensus 272 g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~ 325 (355)
|++++|....+.++...-+++++...-+.....+|-++++..++++.+.++|..
T Consensus 371 ~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~ 424 (831)
T PRK15180 371 ARWREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPET 424 (831)
T ss_pred hhHHHHHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChh
Confidence 889999988888887776777776666667777888899999999988887654
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.89 Score=43.38 Aligned_cols=154 Identities=14% Similarity=0.124 Sum_probs=103.0
Q ss_pred HHHHHHHHHHHHHcCCC----chHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCCC--CHH----HHHHHHHHHhccCch
Q 040440 165 LVEAVDVIDRLIELEPN----EFEWQLLKAQVQS-YAGESEAAIKGFEEILRKDPL--RVE----AYHGLVMAYDGSDKK 233 (355)
Q Consensus 165 ~~~A~~~~~~~~~~~~~----~~~~~~~la~~~~-~~g~~~~A~~~~~~~~~~~p~--~~~----~~~~l~~~~~~~~~~ 233 (355)
...|+.+++-+++..+- ...+++.+|.++. ...++++|..++++++.+... ..+ ..+.++.++.+.+..
T Consensus 37 I~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~ 116 (608)
T PF10345_consen 37 IATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPK 116 (608)
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHH
Confidence 34578888877743221 2336888998877 789999999999999887633 222 244667788777752
Q ss_pred HHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC--CChHHH----HHHHHHHHHcCC
Q 040440 234 LNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEP--RDFRPY----LCQGIIYTLLRK 307 (355)
Q Consensus 234 ~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~--~~~~~~----~~l~~~~~~~g~ 307 (355)
. |....+++++.++..........+.+.....+...+++..|++.++....... .+..+. ...+.+....+.
T Consensus 117 ~--a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~ 194 (608)
T PF10345_consen 117 A--ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGS 194 (608)
T ss_pred H--HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCC
Confidence 2 77888888888776333333333333334444445899999999999987653 444332 334566667787
Q ss_pred HHHHHHHHHHHHH
Q 040440 308 KDEAEKQFEKFRR 320 (355)
Q Consensus 308 ~~~A~~~~~~~l~ 320 (355)
.+++++.++++..
T Consensus 195 ~~d~~~~l~~~~~ 207 (608)
T PF10345_consen 195 PDDVLELLQRAIA 207 (608)
T ss_pred chhHHHHHHHHHH
Confidence 8888888887743
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.54 Score=39.88 Aligned_cols=131 Identities=17% Similarity=0.072 Sum_probs=93.2
Q ss_pred HHHcCCHHHHHHHHHHHHhhC-CCCH-------HHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-h---ccCCch---
Q 040440 193 QSYAGESEAAIKGFEEILRKD-PLRV-------EAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-E---KKKSDL--- 257 (355)
Q Consensus 193 ~~~~g~~~~A~~~~~~~~~~~-p~~~-------~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~---~~~~~~--- 257 (355)
...+|+++.|..++.++-... ..++ ..++..|......+..++.+...+++|.++++. . ...++.
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 357899999999999988765 3333 335566666666662388889999999999866 2 222222
Q ss_pred -HHHHHHHHHHHHHccCHH---HHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 040440 258 -RDFKLLIAQIKVMESKHS---EALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVP 323 (355)
Q Consensus 258 -~~~~~~la~~~~~~g~~~---~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p 323 (355)
..++..++.+|...+.++ +|..+.+.+-...|+.+..+...-.+..+.++.+++.+.+.+++.-.+
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~ 152 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD 152 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc
Confidence 234677888898877755 566666666677787788776666666668899999999998887543
|
It is also involved in sporulation []. |
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.0072 Score=31.56 Aligned_cols=29 Identities=28% Similarity=0.422 Sum_probs=14.9
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHcCC
Q 040440 152 LQTLMEVRIKSQKLVEAVDVIDRLIELEP 180 (355)
Q Consensus 152 ~~~la~~~~~~g~~~~A~~~~~~~~~~~~ 180 (355)
+..+|.++...|++++|+..++++++.+|
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 44455555555555555555555554443
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.64 Score=49.45 Aligned_cols=192 Identities=11% Similarity=0.016 Sum_probs=119.5
Q ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHH-HHHHHcCCHHHHHHHHH
Q 040440 129 VSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKA-QVQSYAGESEAAIKGFE 207 (355)
Q Consensus 129 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la-~~~~~~g~~~~A~~~~~ 207 (355)
+++..|..+|+++++.+|+....+...-......|.++..+...+-.....++...-|..++ .+.++.++++.-..+..
T Consensus 1463 g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qwD~~e~~l~ 1542 (2382)
T KOG0890|consen 1463 GNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQWDLLESYLS 1542 (2382)
T ss_pred ccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcchhhhhhhhh
Confidence 49999999999999999998877777777777888888888877776655554444444443 34456666655444421
Q ss_pred --------------HHHhhCCCCHHHH-HHHHHHHhccCch-------------HH------------------------
Q 040440 208 --------------EILRKDPLRVEAY-HGLVMAYDGSDKK-------------LN------------------------ 235 (355)
Q Consensus 208 --------------~~~~~~p~~~~~~-~~l~~~~~~~~~~-------------~~------------------------ 235 (355)
..+.....+..+. ..+.......++. ++
T Consensus 1543 ~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el~~~~~~l~~~s~~ 1622 (2382)
T KOG0890|consen 1543 DRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLELENSIEELKKVSYD 1622 (2382)
T ss_pred cccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHhhccCcc
Confidence 0111111111110 0000000000000 00
Q ss_pred -----------HH----HHH--HHHHHHHHHh----h----ccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Q 040440 236 -----------EV----EKR--IEKAMERCKK----E----KKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPR 290 (355)
Q Consensus 236 -----------~a----~~~--~~~Al~~~~~----~----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~ 290 (355)
.- ... ..+-+-.+++ . .......+.|...|++..+.|+++.|...+-++.+..
T Consensus 1623 ~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r-- 1700 (2382)
T KOG0890|consen 1623 EDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKESR-- 1700 (2382)
T ss_pred ccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--
Confidence 00 000 1111111111 1 2234556789999999999999999999999887765
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 040440 291 DFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLV 322 (355)
Q Consensus 291 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 322 (355)
-+.++...|..+...|+-..|+.++++.++.+
T Consensus 1701 ~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1701 LPEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred cchHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 57788999999999999999999999999654
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.045 Score=40.58 Aligned_cols=72 Identities=15% Similarity=0.016 Sum_probs=64.5
Q ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHH
Q 040440 129 VSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESE 200 (355)
Q Consensus 129 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 200 (355)
.+.+++..+++.+--..|+..+.-..-|.+++..|+|++|+.+++...+..+..+...-.++.|+..+||.+
T Consensus 24 ~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp~ 95 (153)
T TIGR02561 24 ADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDAE 95 (153)
T ss_pred CCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCChH
Confidence 477888889988888999999999999999999999999999999999888777878888899998888864
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.088 Score=52.32 Aligned_cols=169 Identities=12% Similarity=0.077 Sum_probs=118.3
Q ss_pred HHHHHHHHHHccCHHHHHH------HHHH-HHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--------CCC
Q 040440 152 LQTLMEVRIKSQKLVEAVD------VIDR-LIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKD--------PLR 216 (355)
Q Consensus 152 ~~~la~~~~~~g~~~~A~~------~~~~-~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--------p~~ 216 (355)
....+......|.+.+|.+ ++.. .-.+.|+....+..++.++...|++++|+..-.++.-+. |+.
T Consensus 935 ~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t 1014 (1236)
T KOG1839|consen 935 SPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNT 1014 (1236)
T ss_pred hhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHH
Confidence 4445555666677776666 5552 233467777889999999999999999998877765442 344
Q ss_pred HHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh--hccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-----
Q 040440 217 VEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK--EKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEP----- 289 (355)
Q Consensus 217 ~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~--~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~----- 289 (355)
...+..++......+. ...+...+..|.....- ....|........++.++...++++.|+++.+.++....
T Consensus 1015 ~~~y~nlal~~f~~~~-~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~ 1093 (1236)
T KOG1839|consen 1015 KLAYGNLALYEFAVKN-LSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGP 1093 (1236)
T ss_pred HHHhhHHHHHHHhccC-ccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCc
Confidence 4556666666666554 55555556666555443 345677777778888898999999999999999987532
Q ss_pred ---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 040440 290 ---RDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRL 321 (355)
Q Consensus 290 ---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 321 (355)
.....+..++..+..+|++..|....+....+
T Consensus 1094 ~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~i 1128 (1236)
T KOG1839|consen 1094 KELETALSYHALARLFESMKDFRNALEHEKVTYGI 1128 (1236)
T ss_pred cchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHH
Confidence 23456777888888888888887777766543
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.27 Score=47.83 Aligned_cols=136 Identities=15% Similarity=0.073 Sum_probs=84.6
Q ss_pred ccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHH
Q 040440 162 SQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRI 241 (355)
Q Consensus 162 ~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~ 241 (355)
.+..+.|.++.+++ +.+..|..+|.+..+.|...+|++.|-++ +++..|.....+..+.|. +++...++
T Consensus 1088 i~~ldRA~efAe~~-----n~p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~-~edLv~yL 1156 (1666)
T KOG0985|consen 1088 IGSLDRAYEFAERC-----NEPAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGK-YEDLVKYL 1156 (1666)
T ss_pred hhhHHHHHHHHHhh-----CChHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCc-HHHHHHHH
Confidence 34555555555443 45678999999999999999999998665 677888888888888888 44444333
Q ss_pred HHHHHHHHhhccCCchHHH------------------------HHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHH
Q 040440 242 EKAMERCKKEKKKSDLRDF------------------------KLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLC 297 (355)
Q Consensus 242 ~~Al~~~~~~~~~~~~~~~------------------------~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~ 297 (355)
.-|.+..++ ..-+..+ ....|.-.+..|.|+.|.-+|. +..-|..
T Consensus 1157 ~MaRkk~~E---~~id~eLi~AyAkt~rl~elE~fi~gpN~A~i~~vGdrcf~~~~y~aAkl~y~--------~vSN~a~ 1225 (1666)
T KOG0985|consen 1157 LMARKKVRE---PYIDSELIFAYAKTNRLTELEEFIAGPNVANIQQVGDRCFEEKMYEAAKLLYS--------NVSNFAK 1225 (1666)
T ss_pred HHHHHhhcC---ccchHHHHHHHHHhchHHHHHHHhcCCCchhHHHHhHHHhhhhhhHHHHHHHH--------HhhhHHH
Confidence 333332221 1111111 1122333344445555544443 3345677
Q ss_pred HHHHHHHcCCHHHHHHHHHHHH
Q 040440 298 QGIIYTLLRKKDEAEKQFEKFR 319 (355)
Q Consensus 298 l~~~~~~~g~~~~A~~~~~~~l 319 (355)
++..+..+|+|+.|.+.-+++-
T Consensus 1226 La~TLV~LgeyQ~AVD~aRKAn 1247 (1666)
T KOG0985|consen 1226 LASTLVYLGEYQGAVDAARKAN 1247 (1666)
T ss_pred HHHHHHHHHHHHHHHHHhhhcc
Confidence 8888888899988888777653
|
|
| >PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.16 Score=35.71 Aligned_cols=103 Identities=11% Similarity=0.069 Sum_probs=67.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH---HHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHH
Q 040440 189 KAQVQSYAGESEAAIKGFEEILRKDPLRVEAY---HGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIA 265 (355)
Q Consensus 189 la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~---~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la 265 (355)
++.-++..|++-+|+++.++++...+++...| ..-|.++..... .. .++ +....
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~-------------~t-----en~-d~k~~---- 58 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAK-------------KT-----ENP-DVKFR---- 58 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHH-------------hc-----cCc-hHHHH----
Confidence 45678899999999999999999988776443 333444422211 11 111 11221
Q ss_pred HHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 040440 266 QIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRL 321 (355)
Q Consensus 266 ~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 321 (355)
-.-.++++|.++..+.|.....++.+|.-+-....|+++..-.++++.+
T Consensus 59 -------yLl~sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 59 -------YLLGSVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred -------HHHHhHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 1235677888888888877777777777766666777777777777765
|
|
| >KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.3 Score=35.57 Aligned_cols=78 Identities=15% Similarity=0.148 Sum_probs=56.1
Q ss_pred CHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhh-c-c-CCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCh
Q 040440 216 RVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKE-K-K-KSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDF 292 (355)
Q Consensus 216 ~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~-~-~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~ 292 (355)
.....++++.++.+..+ ..+.++.+.+++.. . . .....+..+.++..+++.++|+.++.+.+.+++..|++.
T Consensus 31 s~~s~f~lAwaLV~S~~-----~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~ 105 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRD-----TEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNR 105 (149)
T ss_pred hHHHHHHHHHHHHcccc-----hHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcH
Confidence 34556677777766554 22367777777772 2 2 334566788889999999999999999999999999887
Q ss_pred HHHHHH
Q 040440 293 RPYLCQ 298 (355)
Q Consensus 293 ~~~~~l 298 (355)
.+....
T Consensus 106 Qa~~Lk 111 (149)
T KOG3364|consen 106 QALELK 111 (149)
T ss_pred HHHHHH
Confidence 765433
|
|
| >COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.016 Score=48.12 Aligned_cols=88 Identities=14% Similarity=0.043 Sum_probs=74.2
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHH-HHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 040440 137 EIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLL-KAQVQSYAGESEAAIKGFEEILRKDPL 215 (355)
Q Consensus 137 ~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-la~~~~~~g~~~~A~~~~~~~~~~~p~ 215 (355)
.|.+.-...++++..|...+..-.+.|-+.+--..|.++++.+|.+.+.|.. -+.-+...++++.++..|.++++.+++
T Consensus 95 ~~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~ 174 (435)
T COG5191 95 ELYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSR 174 (435)
T ss_pred eeehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCC
Confidence 3444555678899999998888888999999999999999999999998876 556677889999999999999999999
Q ss_pred CHHHHHHHH
Q 040440 216 RVEAYHGLV 224 (355)
Q Consensus 216 ~~~~~~~l~ 224 (355)
++..|....
T Consensus 175 ~p~iw~eyf 183 (435)
T COG5191 175 SPRIWIEYF 183 (435)
T ss_pred CchHHHHHH
Confidence 998876443
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.013 Score=46.63 Aligned_cols=53 Identities=21% Similarity=0.244 Sum_probs=32.4
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCc
Q 040440 130 SYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNE 182 (355)
Q Consensus 130 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~ 182 (355)
|.+.+.+.|.++++..|+....|..+|....+.|+++.|...|++.++++|.+
T Consensus 10 D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 10 DAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred ChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 55566666666666666666666666666666666666666666666665554
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.37 Score=43.63 Aligned_cols=131 Identities=14% Similarity=-0.016 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhcc
Q 040440 151 ALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGS 230 (355)
Q Consensus 151 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 230 (355)
-...++..+.+.|-.+.|+.+.+ +++..+.|+. +.|+.+.|.+..++ .++...|..+|......
T Consensus 297 ~~~~i~~fL~~~G~~e~AL~~~~--------D~~~rFeLAl---~lg~L~~A~~~a~~-----~~~~~~W~~Lg~~AL~~ 360 (443)
T PF04053_consen 297 QGQSIARFLEKKGYPELALQFVT--------DPDHRFELAL---QLGNLDIALEIAKE-----LDDPEKWKQLGDEALRQ 360 (443)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHSS---------HHHHHHHHH---HCT-HHHHHHHCCC-----CSTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCHHHHHhhcC--------ChHHHhHHHH---hcCCHHHHHHHHHh-----cCcHHHHHHHHHHHHHc
Confidence 35556666667777777776542 4455555443 67777777665322 34677788888888888
Q ss_pred CchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHH
Q 040440 231 DKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDE 310 (355)
Q Consensus 231 ~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~ 310 (355)
|+ ++-|.+.+++.++ +..+..+|.-.|+.+.-.+..+.+..... +...-.++...|+.++
T Consensus 361 g~--------~~lAe~c~~k~~d-------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~-----~n~af~~~~~lgd~~~ 420 (443)
T PF04053_consen 361 GN--------IELAEECYQKAKD-------FSGLLLLYSSTGDREKLSKLAKIAEERGD-----INIAFQAALLLGDVEE 420 (443)
T ss_dssp TB--------HHHHHHHHHHCT--------HHHHHHHHHHCT-HHHHHHHHHHHHHTT------HHHHHHHHHHHT-HHH
T ss_pred CC--------HHHHHHHHHhhcC-------ccccHHHHHHhCCHHHHHHHHHHHHHccC-----HHHHHHHHHHcCCHHH
Confidence 88 7777766666322 23345566667776665555555543322 1222334455566666
Q ss_pred HHHHHHH
Q 040440 311 AEKQFEK 317 (355)
Q Consensus 311 A~~~~~~ 317 (355)
..+.+.+
T Consensus 421 cv~lL~~ 427 (443)
T PF04053_consen 421 CVDLLIE 427 (443)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666554
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=95.91 E-value=1.2 Score=39.70 Aligned_cols=124 Identities=15% Similarity=0.101 Sum_probs=78.5
Q ss_pred HHHHHHcCC-HHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHH-----HHHHHHHHHHHHhh---ccCCchHHH
Q 040440 190 AQVQSYAGE-SEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEV-----EKRIEKAMERCKKE---KKKSDLRDF 260 (355)
Q Consensus 190 a~~~~~~g~-~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a-----~~~~~~Al~~~~~~---~~~~~~~~~ 260 (355)
|.-+++.|. -++|++.++.+++..+.+.+.....-.... ..+..| ...+-+-....+.. .....+.+.
T Consensus 386 Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvK---q~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~ei 462 (549)
T PF07079_consen 386 AKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFLFVK---QAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEI 462 (549)
T ss_pred HHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHH---HHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHH
Confidence 344566666 677888888888877776654322111110 001111 11111111122221 222233444
Q ss_pred HHHH--HHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHH
Q 040440 261 KLLI--AQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEK 317 (355)
Q Consensus 261 ~~~l--a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 317 (355)
...+ |..++.+|+|.++.-+-.-+.+..| .+.++..+|.+.....+|++|..++..
T Consensus 463 an~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~ 520 (549)
T PF07079_consen 463 ANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQK 520 (549)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 4444 4567789999999999999999999 999999999999999999999999875
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.026 Score=31.86 Aligned_cols=30 Identities=13% Similarity=0.047 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 040440 293 RPYLCQGIIYTLLRKKDEAEKQFEKFRRLV 322 (355)
Q Consensus 293 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 322 (355)
.++.++|.+|...|++++|+.++++++.+.
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 32 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEIR 32 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence 456778888888888888888888887653
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.13 Score=42.97 Aligned_cols=64 Identities=14% Similarity=0.217 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 040440 258 RDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRL 321 (355)
Q Consensus 258 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 321 (355)
..++..++..+...|+++.+...+++.+..+|.+...|..+...|...|+...|+..|++..+.
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 4456778889999999999999999999999999999999999999999999999999988763
|
|
| >KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.23 Score=49.52 Aligned_cols=152 Identities=14% Similarity=0.078 Sum_probs=110.7
Q ss_pred HHHHHHHH-HcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHc--------CCCchHHHHHHHHHHHHcCCHHHHHHH
Q 040440 135 EKEIEQHL-AANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIEL--------EPNEFEWQLLKAQVQSYAGESEAAIKG 205 (355)
Q Consensus 135 ~~~~~~~l-~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~ 205 (355)
+.++.+.. ...|+....+..++..+.+.|++++|+.+-.++.-+ .|+....+..++...+..++...|...
T Consensus 958 lnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~ 1037 (1236)
T KOG1839|consen 958 LNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKS 1037 (1236)
T ss_pred hhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhh
Confidence 33666433 467888999999999999999999999998887543 334455788888888888899999999
Q ss_pred HHHHHhh--------CCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhh--ccCCchHHHHHHHHHHHHHccCHH
Q 040440 206 FEEILRK--------DPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKE--KKKSDLRDFKLLIAQIKVMESKHS 275 (355)
Q Consensus 206 ~~~~~~~--------~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~ 275 (355)
+.++... .|........+..++...++ ++.++.+.+.|...-++. ...-.....+..+++.+...+++.
T Consensus 1038 ~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e-~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr 1116 (1236)
T KOG1839|consen 1038 LNRALKLKLLSSGEDHPPTALSFINLELLLLGVEE-ADTALRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFR 1116 (1236)
T ss_pred HHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHH-HHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHH
Confidence 8888776 24444455667777666666 777778888888755552 233445556777788888888888
Q ss_pred HHHHHHHHHHHh
Q 040440 276 EALRVYEELVKE 287 (355)
Q Consensus 276 ~A~~~~~~~l~~ 287 (355)
.|+...+.....
T Consensus 1117 ~al~~ek~t~~i 1128 (1236)
T KOG1839|consen 1117 NALEHEKVTYGI 1128 (1236)
T ss_pred HHHHHHhhHHHH
Confidence 877777766543
|
|
| >KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.66 E-value=0.83 Score=39.89 Aligned_cols=126 Identities=14% Similarity=0.171 Sum_probs=86.9
Q ss_pred HHHHccCHHHHHHHHHHHHHc----CCC-----chHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-----CC-CHHHHHH
Q 040440 158 VRIKSQKLVEAVDVIDRLIEL----EPN-----EFEWQLLKAQVQSYAGESEAAIKGFEEILRKD-----PL-RVEAYHG 222 (355)
Q Consensus 158 ~~~~~g~~~~A~~~~~~~~~~----~~~-----~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-----p~-~~~~~~~ 222 (355)
.++...++.+|.++-+..+.. +.. ....|+.+..+|...|+...-...+...+... .. .....+.
T Consensus 135 fl~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~ 214 (493)
T KOG2581|consen 135 FLIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINL 214 (493)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHH
Confidence 334568888888887776543 111 12247777788888888777766666655542 11 2233556
Q ss_pred HHHHHhccCchHHHHHHHHHHHHHHHHhh-----ccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Q 040440 223 LVMAYDGSDKKLNEVEKRIEKAMERCKKE-----KKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRD 291 (355)
Q Consensus 223 l~~~~~~~~~~~~~a~~~~~~Al~~~~~~-----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~ 291 (355)
+-..|...+. |+.|-.+..+. ..+.....+.+.+|.+..-+++|..|.+++-+++...|.+
T Consensus 215 LLr~yL~n~l--------ydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~ 280 (493)
T KOG2581|consen 215 LLRNYLHNKL--------YDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQH 280 (493)
T ss_pred HHHHHhhhHH--------HHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcch
Confidence 6677777776 88887777662 2233556778889999999999999999999999998864
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=95.66 E-value=1.3 Score=39.49 Aligned_cols=56 Identities=18% Similarity=0.108 Sum_probs=43.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccC
Q 040440 190 AQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKK 254 (355)
Q Consensus 190 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~ 254 (355)
|..++..|+|.++.-+-.=..++.| .+.++..+|.+.....+ |++|.+++..+..+
T Consensus 469 AEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~--------Y~eA~~~l~~LP~n 524 (549)
T PF07079_consen 469 AEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKR--------YQEAWEYLQKLPPN 524 (549)
T ss_pred HHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhh--------HHHHHHHHHhCCCc
Confidence 3456678888888888777788888 88888888888888877 88888888875443
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.96 Score=38.55 Aligned_cols=172 Identities=13% Similarity=0.081 Sum_probs=112.0
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHc----CC--CchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC------CCCHHHH
Q 040440 153 QTLMEVRIKSQKLVEAVDVIDRLIEL----EP--NEFEWQLLKAQVQSYAGESEAAIKGFEEILRKD------PLRVEAY 220 (355)
Q Consensus 153 ~~la~~~~~~g~~~~A~~~~~~~~~~----~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~------p~~~~~~ 220 (355)
..++..|...++|.+|+......+.. +. .-.+.+..-...|....+..+|...+..+-... |.-....
T Consensus 132 arli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~l 211 (411)
T KOG1463|consen 132 ARLIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATL 211 (411)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHH
Confidence 35788999999999999988877643 22 223456666788889999999988887776542 2211122
Q ss_pred HHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHccCHHHHHHHH--HHHHHhCCCChHHHHHH
Q 040440 221 HGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVY--EELVKEEPRDFRPYLCQ 298 (355)
Q Consensus 221 ~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~--~~~l~~~~~~~~~~~~l 298 (355)
-....++....+++..+..+|-+|.+-|.....+..-...+-.+-.+-+..+..++--..+ +.+++....+.++....
T Consensus 212 DLqSGIlha~ekDykTafSYFyEAfEgf~s~~~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y~g~~i~Amkav 291 (411)
T KOG1463|consen 212 DLQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDVKALTSLKYMLLCKIMLNLPDDVAALLSAKLALKYAGRDIDAMKAV 291 (411)
T ss_pred HHhccceeecccccchHHHHHHHHHccccccCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhccCcchHHHHHH
Confidence 2222233333355888888888888877765554444444444444445556666544443 45666666678888888
Q ss_pred HHHHHH--cCCHHHHHHHHHHHHHhCCC
Q 040440 299 GIIYTL--LRKKDEAEKQFEKFRRLVPR 324 (355)
Q Consensus 299 ~~~~~~--~g~~~~A~~~~~~~l~~~p~ 324 (355)
+..+.+ +.+|+.|+..|+.-+..+|-
T Consensus 292 AeA~~nRSLkdF~~AL~~yk~eL~~D~i 319 (411)
T KOG1463|consen 292 AEAFGNRSLKDFEKALADYKKELAEDPI 319 (411)
T ss_pred HHHhcCCcHHHHHHHHHHhHHHHhcChH
Confidence 888764 45788888888887776653
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=95.61 E-value=1.4 Score=38.59 Aligned_cols=67 Identities=16% Similarity=0.176 Sum_probs=58.0
Q ss_pred CCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 040440 254 KSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEP----RDFRPYLCQGIIYTLLRKKDEAEKQFEKFRR 320 (355)
Q Consensus 254 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 320 (355)
.......+...+.+..+.|+++.|...+.++....+ ..+.+.+..+.+....|+..+|+..++..+.
T Consensus 142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455667789999999999999999999999987652 2567888899999999999999999999887
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.035 Score=31.29 Aligned_cols=28 Identities=21% Similarity=0.400 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHc
Q 040440 151 ALQTLMEVRIKSQKLVEAVDVIDRLIEL 178 (355)
Q Consensus 151 ~~~~la~~~~~~g~~~~A~~~~~~~~~~ 178 (355)
++..+|.+|...|++++|+.++++++..
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 4555666666666666666666655543
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.57 E-value=1.6 Score=38.84 Aligned_cols=154 Identities=9% Similarity=0.022 Sum_probs=101.1
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 040440 137 EIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLR 216 (355)
Q Consensus 137 ~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~ 216 (355)
.+++-++.+|+++..|+.+...+-.+|.+++-.+.+++...-.|-...+|......-...++|.....+|-+++...- +
T Consensus 30 rLRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l-~ 108 (660)
T COG5107 30 RLRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSL-N 108 (660)
T ss_pred HHHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhc-c
Confidence 567778899999999999999999999999999999999988888877877666555666889888889999887543 3
Q ss_pred HHHHHHHHHHHhccCc-hHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHH---------HccCHHHHHHHHHHHH
Q 040440 217 VEAYHGLVMAYDGSDK-KLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQIKV---------MESKHSEALRVYEELV 285 (355)
Q Consensus 217 ~~~~~~l~~~~~~~~~-~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~---------~~g~~~~A~~~~~~~l 285 (355)
.+.|......-.+.+. ...++....-+|.++.-. ..-.+....+|...+..+. .+.+.|.-...|.+++
T Consensus 109 ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ral 188 (660)
T COG5107 109 LDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRAL 188 (660)
T ss_pred HhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHH
Confidence 5555433332222221 111222223444444333 2233444455555554432 3445666777888887
Q ss_pred HhCCCC
Q 040440 286 KEEPRD 291 (355)
Q Consensus 286 ~~~~~~ 291 (355)
...-++
T Consensus 189 ~tP~~n 194 (660)
T COG5107 189 QTPMGN 194 (660)
T ss_pred cCcccc
Confidence 654443
|
|
| >KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.57 Score=40.85 Aligned_cols=131 Identities=14% Similarity=0.099 Sum_probs=85.2
Q ss_pred HHHcCCHHHHHHHHHHHHhhC-CC--------CHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhc-cCCchHHHHH
Q 040440 193 QSYAGESEAAIKGFEEILRKD-PL--------RVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEK-KKSDLRDFKL 262 (355)
Q Consensus 193 ~~~~g~~~~A~~~~~~~~~~~-p~--------~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~-~~~~~~~~~~ 262 (355)
++.+.++.+|.++-+..+... -. ....|+.+..+|...|+ .......+..-+... .+. .......+.+
T Consensus 136 l~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~-l~~~rs~l~~~lrtA-tLrhd~e~qavLiN 213 (493)
T KOG2581|consen 136 LIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGR-LADIRSFLHALLRTA-TLRHDEEGQAVLIN 213 (493)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcc-hHHHHHHHHHHHHHh-hhcCcchhHHHHHH
Confidence 345688999988877665431 11 12346677777777766 222222121111111 122 3334455577
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHH--hCCCC--hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 040440 263 LIAQIKVMESKHSEALRVYEELVK--EEPRD--FRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRN 325 (355)
Q Consensus 263 ~la~~~~~~g~~~~A~~~~~~~l~--~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~ 325 (355)
.+-+.|...+.|+.|.....+..- ...++ ....+.+|.+..-+++|..|.++|-+++...|++
T Consensus 214 ~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~ 280 (493)
T KOG2581|consen 214 LLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQH 280 (493)
T ss_pred HHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcch
Confidence 788899999999999988877641 11122 3456789999999999999999999999999974
|
|
| >PF12862 Apc5: Anaphase-promoting complex subunit 5 | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.093 Score=36.15 Aligned_cols=57 Identities=19% Similarity=0.147 Sum_probs=44.9
Q ss_pred HHccCHHHHHHHHHHHHHhCCC----C-----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 040440 269 VMESKHSEALRVYEELVKEEPR----D-----FRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRN 325 (355)
Q Consensus 269 ~~~g~~~~A~~~~~~~l~~~~~----~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~ 325 (355)
.+.|+|.+|++.+.+.++.... . ..+..+++.++...|++++|+..+++++++....
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~ 74 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAREN 74 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 5679999998888888764332 1 3456788999999999999999999999876444
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.49 E-value=1.1 Score=41.96 Aligned_cols=24 Identities=17% Similarity=0.088 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHH
Q 040440 151 ALQTLMEVRIKSQKLVEAVDVIDR 174 (355)
Q Consensus 151 ~~~~la~~~~~~g~~~~A~~~~~~ 174 (355)
++..+|..+..+..|++|.++|.+
T Consensus 798 A~r~ig~~fa~~~~We~A~~yY~~ 821 (1189)
T KOG2041|consen 798 AFRNIGETFAEMMEWEEAAKYYSY 821 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444444444444444444444443
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.41 E-value=0.13 Score=42.90 Aligned_cols=64 Identities=27% Similarity=0.392 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 040440 149 IEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRK 212 (355)
Q Consensus 149 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 212 (355)
..++..++..+...|+++.+++.+++.+..+|.+...|..+-..|...|+...|+..|+++-+.
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 4456677778888888888888888888888888888888888888888888888888877664
|
|
| >COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.38 E-value=0.073 Score=44.46 Aligned_cols=80 Identities=11% Similarity=0.062 Sum_probs=70.3
Q ss_pred hccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHH-HHHHHHHcCCHHHHHHHHHHHHHhCCCChhHH
Q 040440 251 EKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLC-QGIIYTLLRKKDEAEKQFEKFRRLVPRNHPYR 329 (355)
Q Consensus 251 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~ 329 (355)
....+.++.+|...+..-.+.|.|.+--.+|.++++.+|.+.+.|.. .+.-+...++.+.+...|.+++..+|+++..+
T Consensus 100 tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw 179 (435)
T COG5191 100 TNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIW 179 (435)
T ss_pred hhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHH
Confidence 45568888999988888889999999999999999999999999977 55667889999999999999999999987655
Q ss_pred H
Q 040440 330 E 330 (355)
Q Consensus 330 ~ 330 (355)
.
T Consensus 180 ~ 180 (435)
T COG5191 180 I 180 (435)
T ss_pred H
Confidence 4
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=95.38 E-value=0.2 Score=39.40 Aligned_cols=70 Identities=10% Similarity=0.144 Sum_probs=57.6
Q ss_pred HHHHHHHHhh--ccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC----ChHHHHHHHHHHHHcCCHHHHH
Q 040440 242 EKAMERCKKE--KKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPR----DFRPYLCQGIIYTLLRKKDEAE 312 (355)
Q Consensus 242 ~~Al~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~----~~~~~~~l~~~~~~~g~~~~A~ 312 (355)
+.|+..|-.. ...-+++.+.+.+|..|. ..+.++++..+.+++++... +++++..|+.++.++|+++.|-
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 6777777763 334467888999998887 67899999999999987653 5889999999999999999885
|
|
| >PRK13184 pknD serine/threonine-protein kinase; Reviewed | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.39 Score=47.46 Aligned_cols=132 Identities=11% Similarity=-0.085 Sum_probs=95.8
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHH
Q 040440 191 QVQSYAGESEAAIKGFEEILRKDPLRV---EAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQI 267 (355)
Q Consensus 191 ~~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~ 267 (355)
.++.....|+.|+..|++.....|+.. ++.+..|........ ...-...+.+|+..|+.+...+..+--|...|.+
T Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 (932)
T PRK13184 483 DAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKAS-EQGDPRDFTQALSEFSYLHGGVGAPLEYLGKALV 561 (932)
T ss_pred HHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHH-hcCChHHHHHHHHHHHHhcCCCCCchHHHhHHHH
Confidence 566777889999999999999988654 556666666543322 1111256999999999988888888889999999
Q ss_pred HHHccCHHHHHHHHHHHHHhCCCChHHHH-------HHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 040440 268 KVMESKHSEALRVYEELVKEEPRDFRPYL-------CQGIIYTLLRKKDEAEKQFEKFRRLVPRN 325 (355)
Q Consensus 268 ~~~~g~~~~A~~~~~~~l~~~~~~~~~~~-------~l~~~~~~~g~~~~A~~~~~~~l~~~p~~ 325 (355)
|..+|++++-+++|.-+++..|..+.+-. .+-.+... +-..|....--++...|..
T Consensus 562 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 624 (932)
T PRK13184 562 YQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYK--HRREALVFMLLALWIAPEK 624 (932)
T ss_pred HHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhCccc
Confidence 99999999999999999999998765432 23333322 2245666666667777765
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.24 E-value=1 Score=34.57 Aligned_cols=120 Identities=12% Similarity=0.081 Sum_probs=88.1
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHH-----HHHHHH
Q 040440 193 QSYAGESEAAIKGFEEILRKDPLR--VEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRD-----FKLLIA 265 (355)
Q Consensus 193 ~~~~g~~~~A~~~~~~~~~~~p~~--~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~-----~~~~la 265 (355)
+...|..++|+..|..+-+-.-.. .-+....+.+....|+ ...|+..|.+...+...+. ....-+
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgd--------ta~AV~aFdeia~dt~~P~~~rd~ARlraa 139 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGD--------TAAAVAAFDEIAADTSIPQIGRDLARLRAA 139 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhccc--------HHHHHHHHHHHhccCCCcchhhHHHHHHHH
Confidence 445788889999998887765332 2345677788888888 7888888887443333322 345556
Q ss_pred HHHHHccCHHHHHHHHHHHH-HhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 040440 266 QIKVMESKHSEALRVYEELV-KEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRR 320 (355)
Q Consensus 266 ~~~~~~g~~~~A~~~~~~~l-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 320 (355)
.++...|.|++-....+.+- ..+|-...+...||....+.|++.+|..+|.+...
T Consensus 140 ~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 140 YLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 77888999999888777653 23444566788899999999999999999999876
|
|
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.21 E-value=0.21 Score=39.64 Aligned_cols=71 Identities=13% Similarity=0.082 Sum_probs=57.8
Q ss_pred HHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHHH
Q 040440 267 IKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHPYREYFVDNMV 337 (355)
Q Consensus 267 ~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~ 337 (355)
-+.+.+..++|+...+.-++..|.+......+-.++.-.|+|++|...++-+-.+.|++.....++...+.
T Consensus 10 eLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir 80 (273)
T COG4455 10 ELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIR 80 (273)
T ss_pred HHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHH
Confidence 34667888999999999999999998888888899999999999999999999999887655444444443
|
|
| >PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease [] | Back alignment and domain information |
|---|
Probab=95.16 E-value=0.37 Score=40.03 Aligned_cols=85 Identities=15% Similarity=0.027 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------hHHHHHHHHHHHHcCC
Q 040440 234 LNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRD------FRPYLCQGIIYTLLRK 307 (355)
Q Consensus 234 ~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~------~~~~~~l~~~~~~~g~ 307 (355)
....++.+++|++.|+......-...+...+|..|+..|++++|+++|+.+......+ ..+...+..|+...|+
T Consensus 154 s~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~ 233 (247)
T PF11817_consen 154 SKLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGD 233 (247)
T ss_pred HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCC
Confidence 4456788899999998866666666778899999999999999999999997654433 3456677888899999
Q ss_pred HHHHHHHHHHH
Q 040440 308 KDEAEKQFEKF 318 (355)
Q Consensus 308 ~~~A~~~~~~~ 318 (355)
.++.+.+.-+.
T Consensus 234 ~~~~l~~~leL 244 (247)
T PF11817_consen 234 VEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHHH
Confidence 88877765544
|
Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats. |
| >KOG4814 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.12 E-value=2.8 Score=39.09 Aligned_cols=82 Identities=12% Similarity=0.055 Sum_probs=65.9
Q ss_pred HHHHHHHHHh-------hccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHH
Q 040440 241 IEKAMERCKK-------EKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEK 313 (355)
Q Consensus 241 ~~~Al~~~~~-------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 313 (355)
|..+++.|.. ...+..-......++.+|....+.|.|.++++++-+.+|.++-....+-.+....|.-++|+.
T Consensus 370 Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~E~~Se~AL~ 449 (872)
T KOG4814|consen 370 YVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLAEDKSEEALT 449 (872)
T ss_pred HHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcchHHHHH
Confidence 5555555554 222223355678889999999999999999999999999999888889999999999999999
Q ss_pred HHHHHHHhC
Q 040440 314 QFEKFRRLV 322 (355)
Q Consensus 314 ~~~~~l~~~ 322 (355)
+..+.....
T Consensus 450 ~~~~~~s~~ 458 (872)
T KOG4814|consen 450 CLQKIKSSE 458 (872)
T ss_pred HHHHHHhhh
Confidence 998877654
|
|
| >COG2912 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.06 E-value=0.24 Score=40.94 Aligned_cols=71 Identities=17% Similarity=0.143 Sum_probs=63.4
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 040440 152 LQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHG 222 (355)
Q Consensus 152 ~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 222 (355)
..++=..+...++++.|..+.++.+.++|+++.-+.-.|.+|.+.|.+.-|++.++..++.-|+++.+-..
T Consensus 184 l~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~i 254 (269)
T COG2912 184 LRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMI 254 (269)
T ss_pred HHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHH
Confidence 34455578899999999999999999999999999999999999999999999999999999998876443
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=95.05 E-value=2.6 Score=38.21 Aligned_cols=184 Identities=14% Similarity=0.052 Sum_probs=116.0
Q ss_pred CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 040440 146 PNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVM 225 (355)
Q Consensus 146 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 225 (355)
|-+...+..+..++...-++.-....+.+++... ++..+++.++.+|... ..++-...+++.++.+-++...-..++.
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~-e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~ 140 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG-ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELAD 140 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHH
Confidence 3344445555555556666666777778877764 4556888999999888 6677888999999998888888888888
Q ss_pred HHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-ChH-HHHHHHHHHH
Q 040440 226 AYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPR-DFR-PYLCQGIIYT 303 (355)
Q Consensus 226 ~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~-~~~-~~~~l~~~~~ 303 (355)
.|.. ++ .+.+...|.+|+..+-.........++|..+-.. --.+.+.-+....+.-+.... ... ++..+-.-|.
T Consensus 141 ~yEk-ik-~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys 216 (711)
T COG1747 141 KYEK-IK-KSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYS 216 (711)
T ss_pred HHHH-hc-hhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhc
Confidence 8877 44 5566666777766554333333333444333221 123444444444443332221 122 2223334566
Q ss_pred HcCCHHHHHHHHHHHHHhCCCChhHHHHHHHH
Q 040440 304 LLRKKDEAEKQFEKFRRLVPRNHPYREYFVDN 335 (355)
Q Consensus 304 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~ 335 (355)
...++.+|++.+.-.++.+..+...+..+...
T Consensus 217 ~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~ 248 (711)
T COG1747 217 ENENWTEAIRILKHILEHDEKDVWARKEIIEN 248 (711)
T ss_pred cccCHHHHHHHHHHHhhhcchhhhHHHHHHHH
Confidence 77899999999999999988886666555444
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.04 E-value=0.089 Score=47.19 Aligned_cols=92 Identities=15% Similarity=0.107 Sum_probs=53.4
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHHHccC
Q 040440 195 YAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQIKVMESK 273 (355)
Q Consensus 195 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~~~g~ 273 (355)
..+....|+..|.+++...|.....+.+.+.++++.+-.- ..-.|+.-+.. ...++.....++.|++++...++
T Consensus 386 y~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~-----d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r 460 (758)
T KOG1310|consen 386 YESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRG-----DSYLALRDCHVALRLNPSIQKAHFRLARALNELTR 460 (758)
T ss_pred hhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccc-----cHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhh
Confidence 3445567777888888888877777777777766554300 01111111111 33455555666666666666666
Q ss_pred HHHHHHHHHHHHHhCCCC
Q 040440 274 HSEALRVYEELVKEEPRD 291 (355)
Q Consensus 274 ~~~A~~~~~~~l~~~~~~ 291 (355)
+.+|+++...+....|.+
T Consensus 461 ~~eal~~~~alq~~~Ptd 478 (758)
T KOG1310|consen 461 YLEALSCHWALQMSFPTD 478 (758)
T ss_pred HHHhhhhHHHHhhcCchh
Confidence 777776666665555543
|
|
| >COG2912 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.02 E-value=0.26 Score=40.68 Aligned_cols=68 Identities=24% Similarity=0.219 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChh
Q 040440 260 FKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHP 327 (355)
Q Consensus 260 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 327 (355)
...++=..+...++++.|..+.++.+..+|.++.-+.-.|.+|.++|.+.-|++.++..++..|+++.
T Consensus 183 ll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~ 250 (269)
T COG2912 183 LLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPI 250 (269)
T ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchH
Confidence 34455567888999999999999999999999999999999999999999999999999999998744
|
|
| >PF12862 Apc5: Anaphase-promoting complex subunit 5 | Back alignment and domain information |
|---|
Probab=94.85 E-value=0.3 Score=33.63 Aligned_cols=55 Identities=24% Similarity=0.292 Sum_probs=37.5
Q ss_pred HHHccCHHHHHHHHHHHHHcCCC---------chHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 040440 159 RIKSQKLVEAVDVIDRLIELEPN---------EFEWQLLKAQVQSYAGESEAAIKGFEEILRKD 213 (355)
Q Consensus 159 ~~~~g~~~~A~~~~~~~~~~~~~---------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 213 (355)
.++.|+|.+|++.+.+....... ...+...++.++...|++++|+..+++++++.
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLA 71 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 45677777777777776654211 12356667778888888888888888888764
|
|
| >COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.82 E-value=2.9 Score=38.49 Aligned_cols=32 Identities=19% Similarity=0.063 Sum_probs=17.7
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCChHHHH
Q 040440 265 AQIKVMESKHSEALRVYEELVKEEPRDFRPYL 296 (355)
Q Consensus 265 a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~ 296 (355)
++.....|+..++....+++....|.+..+..
T Consensus 149 ~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~ 180 (620)
T COG3914 149 GRYLKLLGRTAEAELALERAVDLLPKYPRVLG 180 (620)
T ss_pred HHHHHHhccHHHHHHHHHHHHHhhhhhhhhHh
Confidence 55555555666666666666665555544433
|
|
| >PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [] | Back alignment and domain information |
|---|
Probab=94.71 E-value=0.15 Score=27.82 Aligned_cols=32 Identities=16% Similarity=-0.039 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHH--HHHHHHhCCC
Q 040440 293 RPYLCQGIIYTLLRKKDEAEKQ--FEKFRRLVPR 324 (355)
Q Consensus 293 ~~~~~l~~~~~~~g~~~~A~~~--~~~~l~~~p~ 324 (355)
+.++.+|..+..+|++++|++. |+-+..+++.
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 3456667777777777777777 3355555554
|
; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A. |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=94.68 E-value=0.63 Score=42.18 Aligned_cols=136 Identities=13% Similarity=0.067 Sum_probs=86.3
Q ss_pred HHHHHHccCHHHHHHHHHHHHHcCCCc-hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchH
Q 040440 156 MEVRIKSQKLVEAVDVIDRLIELEPNE-FEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKL 234 (355)
Q Consensus 156 a~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 234 (355)
-......|+++++....+.. ++-|.- ......++..+.+.|-.+.|+... .+++..+.|+ .+.|+
T Consensus 268 fk~av~~~d~~~v~~~i~~~-~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~--------~D~~~rFeLA---l~lg~-- 333 (443)
T PF04053_consen 268 FKTAVLRGDFEEVLRMIAAS-NLLPNIPKDQGQSIARFLEKKGYPELALQFV--------TDPDHRFELA---LQLGN-- 333 (443)
T ss_dssp HHHHHHTT-HHH-----HHH-HTGGG--HHHHHHHHHHHHHTT-HHHHHHHS--------S-HHHHHHHH---HHCT---
T ss_pred HHHHHHcCChhhhhhhhhhh-hhcccCChhHHHHHHHHHHHCCCHHHHHhhc--------CChHHHhHHH---HhcCC--
Confidence 34556789999988777522 112222 234556677778888888887653 3455554444 56677
Q ss_pred HHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHH
Q 040440 235 NEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQ 314 (355)
Q Consensus 235 ~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 314 (355)
++.|.++.++ .++...|..||.....+|+++-|.++|+++- -+..+..+|.-.|+.+.-.+.
T Consensus 334 ------L~~A~~~a~~----~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~--------d~~~L~lLy~~~g~~~~L~kl 395 (443)
T PF04053_consen 334 ------LDIALEIAKE----LDDPEKWKQLGDEALRQGNIELAEECYQKAK--------DFSGLLLLYSSTGDREKLSKL 395 (443)
T ss_dssp ------HHHHHHHCCC----CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT---------HHHHHHHHHHCT-HHHHHHH
T ss_pred ------HHHHHHHHHh----cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhc--------CccccHHHHHHhCCHHHHHHH
Confidence 8888887654 3467799999999999999999999999863 245678888899998777777
Q ss_pred HHHHHHhCC
Q 040440 315 FEKFRRLVP 323 (355)
Q Consensus 315 ~~~~l~~~p 323 (355)
.+.+.....
T Consensus 396 ~~~a~~~~~ 404 (443)
T PF04053_consen 396 AKIAEERGD 404 (443)
T ss_dssp HHHHHHTT-
T ss_pred HHHHHHccC
Confidence 766665443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.61 E-value=2.6 Score=36.08 Aligned_cols=135 Identities=16% Similarity=0.140 Sum_probs=79.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhh---CC--CCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHH
Q 040440 186 QLLKAQVQSYAGESEAAIKGFEEILRK---DP--LRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDF 260 (355)
Q Consensus 186 ~~~la~~~~~~g~~~~A~~~~~~~~~~---~p--~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~ 260 (355)
...++..+.+.|+.++-....+..-.. .+ ........+........+..+.-.+...+.+++..+.+..--...+
T Consensus 51 Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v~KakaaKlvR~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~ekRtFLRq~L 130 (411)
T KOG1463|consen 51 ILELGDLLAKEGDAEELRDLITSLRPFLSSVSKAKAAKLVRSLVDMFLKIDDGTGDQIELCTECIEWAKREKRTFLRQSL 130 (411)
T ss_pred HHHHHHHHHhccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 455666666666666554444333222 11 1122233344444444443444455566666666554433333445
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHh----CC--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 040440 261 KLLIAQIKVMESKHSEALRVYEELVKE----EP--RDFRPYLCQGIIYTLLRKKDEAEKQFEKFRR 320 (355)
Q Consensus 261 ~~~la~~~~~~g~~~~A~~~~~~~l~~----~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 320 (355)
-..++..|...++|.+|+.....++.. +. .-.+++..-..+|....+..+|...+..+..
T Consensus 131 earli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART 196 (411)
T KOG1463|consen 131 EARLIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSART 196 (411)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHH
Confidence 667888999999999999888877642 22 1245566667888888888888888777654
|
|
| >KOG4814 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.60 E-value=0.41 Score=44.18 Aligned_cols=79 Identities=11% Similarity=-0.006 Sum_probs=63.5
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHcCCCchH------HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 040440 154 TLMEVRIKSQKLVEAVDVIDRLIELEPNEFE------WQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAY 227 (355)
Q Consensus 154 ~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~------~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 227 (355)
+-|.-+++..+|..+++.|...+...|.+.. ....+..||..+.+.+.|.++++++-+.+|.++-....+..+.
T Consensus 359 n~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~ 438 (872)
T KOG4814|consen 359 NTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSF 438 (872)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 3455667889999999999999887665432 4667888999999999999999999999999887777666666
Q ss_pred hccCc
Q 040440 228 DGSDK 232 (355)
Q Consensus 228 ~~~~~ 232 (355)
...+.
T Consensus 439 ~~E~~ 443 (872)
T KOG4814|consen 439 LAEDK 443 (872)
T ss_pred HHhcc
Confidence 66665
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.49 E-value=1.1 Score=42.95 Aligned_cols=96 Identities=15% Similarity=0.055 Sum_probs=56.6
Q ss_pred CHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHc-CCCchHHHHHHHHHHHHcCCHHHHHHHHH
Q 040440 130 SYEEKEKEIEQHLAANPN-DIEALQTLMEVRIKSQKLVEAVDVIDRLIEL-EPNEFEWQLLKAQVQSYAGESEAAIKGFE 207 (355)
Q Consensus 130 ~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 207 (355)
-|+-|+.+.+.- ..+++ -...+...|..++..|++++|...|-+.+.. +|... ..-+....+..+-..+++
T Consensus 349 ly~~Ai~LAk~~-~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s~V------i~kfLdaq~IknLt~YLe 421 (933)
T KOG2114|consen 349 LYKVAINLAKSQ-HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPSEV------IKKFLDAQRIKNLTSYLE 421 (933)
T ss_pred hHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChHHH------HHHhcCHHHHHHHHHHHH
Confidence 455555544332 11222 2356777888899999999999999988754 22211 111233444455555666
Q ss_pred HHHhhCCCCHHHHHHHHHHHhccCc
Q 040440 208 EILRKDPLRVEAYHGLVMAYDGSDK 232 (355)
Q Consensus 208 ~~~~~~p~~~~~~~~l~~~~~~~~~ 232 (355)
...+..-.+.+-...|..+|.+.++
T Consensus 422 ~L~~~gla~~dhttlLLncYiKlkd 446 (933)
T KOG2114|consen 422 ALHKKGLANSDHTTLLLNCYIKLKD 446 (933)
T ss_pred HHHHcccccchhHHHHHHHHHHhcc
Confidence 6666554455555566777777766
|
|
| >KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.31 E-value=3 Score=35.60 Aligned_cols=149 Identities=14% Similarity=0.076 Sum_probs=82.2
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchH
Q 040440 155 LMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKL 234 (355)
Q Consensus 155 la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 234 (355)
+.+..++..+..+-++....+++++|+...++..++.- ...-..+|.++++++++.... .+...+.....|.
T Consensus 190 IMQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEE--Ea~Ti~~AE~l~k~ALka~e~----~yr~sqq~qh~~~-- 261 (556)
T KOG3807|consen 190 IMQKAWRERNPPARIKAAYQALEINNECATAYVLLAEE--EATTIVDAERLFKQALKAGET----IYRQSQQCQHQSP-- 261 (556)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhh--hhhhHHHHHHHHHHHHHHHHH----HHhhHHHHhhhcc--
Confidence 33444555666666677777778888877777777642 233456777777777764321 1111222222221
Q ss_pred HHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC--hHHHHHHHHHHHHcCCHHHHH
Q 040440 235 NEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRD--FRPYLCQGIIYTLLRKKDEAE 312 (355)
Q Consensus 235 ~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~--~~~~~~l~~~~~~~g~~~~A~ 312 (355)
..+|... .+......+...++.+-.++|+..+|++.++...+..|-. ..+.-++...+..+.-|.+..
T Consensus 262 ------~~da~~r----RDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvq 331 (556)
T KOG3807|consen 262 ------QHEAQLR----RDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQ 331 (556)
T ss_pred ------chhhhhh----cccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111110 0111122334556777788888888888888877766621 234556666666666666665
Q ss_pred HHHHHHHHh
Q 040440 313 KQFEKFRRL 321 (355)
Q Consensus 313 ~~~~~~l~~ 321 (355)
..+-+.-++
T Consensus 332 avLakYDdi 340 (556)
T KOG3807|consen 332 AVLAKYDDI 340 (556)
T ss_pred HHHHhhccc
Confidence 555555443
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.31 E-value=2 Score=39.99 Aligned_cols=50 Identities=22% Similarity=0.185 Sum_probs=30.2
Q ss_pred HHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 040440 266 QIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKF 318 (355)
Q Consensus 266 ~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 318 (355)
++....++|++|....++.-+. -.++|+-.|..+....+++||.+.|.++
T Consensus 781 qlHve~~~W~eAFalAe~hPe~---~~dVy~pyaqwLAE~DrFeEAqkAfhkA 830 (1081)
T KOG1538|consen 781 QLHVETQRWDEAFALAEKHPEF---KDDVYMPYAQWLAENDRFEEAQKAFHKA 830 (1081)
T ss_pred hheeecccchHhHhhhhhCccc---cccccchHHHHhhhhhhHHHHHHHHHHh
Confidence 3445556677776666553322 2345666677777777777777666554
|
|
| >KOG2422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.21 E-value=4.5 Score=37.26 Aligned_cols=154 Identities=16% Similarity=0.093 Sum_probs=98.0
Q ss_pred ccCHHHHHHHHHHHHHc------------CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----------------
Q 040440 162 SQKLVEAVDVIDRLIEL------------EPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRK----------------- 212 (355)
Q Consensus 162 ~g~~~~A~~~~~~~~~~------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~----------------- 212 (355)
.+.|++|...|.-+... .|.+.+.+..++.++..+|+.+-|.+..++++=.
T Consensus 251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cR 330 (665)
T KOG2422|consen 251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCR 330 (665)
T ss_pred chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccccccc
Confidence 34566777766666544 5666778999999999999999888888777632
Q ss_pred ----CCCCHHHHH---HHHHHHhccCchHHHHHHHHHHHHHHHHh-hccCCc-hHHHHHHHHHHHH-HccCHHHHHHHHH
Q 040440 213 ----DPLRVEAYH---GLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSD-LRDFKLLIAQIKV-MESKHSEALRVYE 282 (355)
Q Consensus 213 ----~p~~~~~~~---~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~-~~~~~~~la~~~~-~~g~~~~A~~~~~ 282 (355)
+|.|...|. ....-+.+.|- +..|+++++- ...+|. ++.....+..+|. +..+|+=-++.++
T Consensus 331 L~y~~~eNR~FyL~l~r~m~~l~~RGC--------~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~ 402 (665)
T KOG2422|consen 331 LPYIYPENRQFYLALFRYMQSLAQRGC--------WRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSN 402 (665)
T ss_pred CcccchhhHHHHHHHHHHHHHHHhcCC--------hHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHH
Confidence 122333222 22223344454 7888888887 444554 5555555555554 5677777777777
Q ss_pred HHHHh-----CCCChHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCC
Q 040440 283 ELVKE-----EPRDFRPYLCQGIIYTLLRK---KDEAEKQFEKFRRLVPR 324 (355)
Q Consensus 283 ~~l~~-----~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~l~~~p~ 324 (355)
..-.. -| +...-..++..|..... .+.|...+.+|+...|.
T Consensus 403 ~~e~~n~l~~~P-N~~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P~ 451 (665)
T KOG2422|consen 403 EPENMNKLSQLP-NFGYSLALARFFLRKNEEDDRQSALNALLQALKHHPL 451 (665)
T ss_pred HHHhhccHhhcC-CchHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCcH
Confidence 66332 23 33333456666665554 57788899999888873
|
|
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=94.04 E-value=0.1 Score=26.04 Aligned_cols=21 Identities=24% Similarity=0.170 Sum_probs=10.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHH
Q 040440 295 YLCQGIIYTLLRKKDEAEKQF 315 (355)
Q Consensus 295 ~~~l~~~~~~~g~~~~A~~~~ 315 (355)
.+.+|.++...|+.++|...+
T Consensus 4 ~~~la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 4 RLALARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHHHHcCCHHHHHHHH
Confidence 344555555555555555444
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.00 E-value=2.1 Score=35.85 Aligned_cols=61 Identities=15% Similarity=0.132 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 040440 260 FKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRR 320 (355)
Q Consensus 260 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 320 (355)
+....+..|...|.+.+|+++.++++..+|-+...+..+..++..+|+--.+...|++.-+
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 3444577889999999999999999999999999999999999999998888888877643
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.97 E-value=0.28 Score=44.22 Aligned_cols=88 Identities=13% Similarity=0.019 Sum_probs=77.4
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH---ccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHH
Q 040440 130 SYEEKEKEIEQHLAANPNDIEALQTLMEVRIK---SQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGF 206 (355)
Q Consensus 130 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 206 (355)
.+..++..|.+++...|.....+.+.+.++.+ .|+.-.|+.-...+++++|....+++.|+.++..++++.+|++..
T Consensus 389 ~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal~~~ 468 (758)
T KOG1310|consen 389 IVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEALSCH 468 (758)
T ss_pred HHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhhhH
Confidence 56788999999999999999999998888875 467778888888999999999999999999999999999999998
Q ss_pred HHHHhhCCCCH
Q 040440 207 EEILRKDPLRV 217 (355)
Q Consensus 207 ~~~~~~~p~~~ 217 (355)
..+....|.+.
T Consensus 469 ~alq~~~Ptd~ 479 (758)
T KOG1310|consen 469 WALQMSFPTDV 479 (758)
T ss_pred HHHhhcCchhh
Confidence 88888788544
|
|
| >PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane | Back alignment and domain information |
|---|
Probab=93.86 E-value=0.91 Score=29.68 Aligned_cols=53 Identities=8% Similarity=-0.085 Sum_probs=31.5
Q ss_pred HHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHH---HHHHHcCCHHHHHHHHHH
Q 040440 156 MEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKA---QVQSYAGESEAAIKGFEE 208 (355)
Q Consensus 156 a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la---~~~~~~g~~~~A~~~~~~ 208 (355)
|.-++..++.++|+..++++++..++..+-+..+| .+|...|+|.+.+++--.
T Consensus 13 GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~ 68 (80)
T PF10579_consen 13 GLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQ 68 (80)
T ss_pred HHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33345666677777777777766665555444433 556666666666665443
|
Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane |
| >PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [] | Back alignment and domain information |
|---|
Probab=93.80 E-value=0.29 Score=26.69 Aligned_cols=20 Identities=25% Similarity=0.105 Sum_probs=9.8
Q ss_pred HHHHHHHHHHccCHHHHHHH
Q 040440 152 LQTLMEVRIKSQKLVEAVDV 171 (355)
Q Consensus 152 ~~~la~~~~~~g~~~~A~~~ 171 (355)
+..+|..+...|++++|+..
T Consensus 4 ~y~~a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 4 LYGLAYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHH
Confidence 44445555555555555555
|
; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A. |
| >KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.80 E-value=6.7 Score=37.79 Aligned_cols=185 Identities=11% Similarity=0.053 Sum_probs=111.3
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHH-HcCCHH--------------H
Q 040440 137 EIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQS-YAGESE--------------A 201 (355)
Q Consensus 137 ~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~--------------~ 201 (355)
.+++.++..+.....|..+.......|+.-.-...+++++...+.+...|...+...- .++-.+ -
T Consensus 300 ~~e~~~q~~~~~~q~~~~yidfe~~~G~p~ri~l~~eR~~~E~~~~~~~wi~y~~~~d~eLkv~~~~~~~~~ra~R~cp~ 379 (881)
T KOG0128|consen 300 KFERLVQKEPIKDQEWMSYIDFEKKSGDPVRIQLIEERAVAEMVLDRALWIGYGVYLDTELKVPQRGVSVHPRAVRSCPW 379 (881)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHhccccHHHHhhhhhhcccccccccccccccchhhcCCch
Confidence 3444445555555667777777778888888888888888777777777766654221 111111 1
Q ss_pred HHHHHHHHH---hhCCCCHHH--------------HHHHHHHHhc-cC-----chHHHHHHHHHHHHHHHHhhcc--CCc
Q 040440 202 AIKGFEEIL---RKDPLRVEA--------------YHGLVMAYDG-SD-----KKLNEVEKRIEKAMERCKKEKK--KSD 256 (355)
Q Consensus 202 A~~~~~~~~---~~~p~~~~~--------------~~~l~~~~~~-~~-----~~~~~a~~~~~~Al~~~~~~~~--~~~ 256 (355)
...++++++ +.+...... .+.....|.+ .+ ..++.....++.|...+..... ...
T Consensus 380 tgdL~~rallAleR~re~~~vI~~~l~~~ls~~~~l~~~~~~~rr~~~~~~~s~~~s~lr~~F~~A~~eLt~~~~~~~Dt 459 (881)
T KOG0128|consen 380 TGDLWKRALLALERNREEITVIVQNLEKDLSMTVELHNDYLAYRRRCTNIIDSQDYSSLRAAFNHAWEELTELYGDQLDT 459 (881)
T ss_pred HHHHHHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 112222221 111110000 0011111111 11 1144556778888888877322 233
Q ss_pred hHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhCCCChH-HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 040440 257 LRDFKLLIAQIKV-MESKHSEALRVYEELVKEEPRDFR-PYLCQGIIYTLLRKKDEAEKQFEKFRRL 321 (355)
Q Consensus 257 ~~~~~~~la~~~~-~~g~~~~A~~~~~~~l~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 321 (355)
...++...|.+++ .+++.+.++.+++..+.....+.. .|+....+-...|+...++.++++++..
T Consensus 460 ~~~~~q~wA~~E~sl~~nmd~~R~iWn~imty~~~~iag~Wle~~~lE~~~g~~~~~R~~~R~ay~~ 526 (881)
T KOG0128|consen 460 RTEVLQLWAQVEASLLKNMDKAREIWNFIMTYGGGSIAGKWLEAINLEREYGDGPSARKVLRKAYSQ 526 (881)
T ss_pred HHHHHHHHHHHHHHHhhchhhhhHhhhccccCCcchHHHHHHHHHhHHHHhCCchhHHHHHHHHHhc
Confidence 3455666677765 468899999999998877666666 8888899999999999999999888765
|
|
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=93.76 E-value=0.096 Score=26.12 Aligned_cols=21 Identities=14% Similarity=0.061 Sum_probs=10.7
Q ss_pred HHHHHHHHHHccCHHHHHHHH
Q 040440 152 LQTLMEVRIKSQKLVEAVDVI 172 (355)
Q Consensus 152 ~~~la~~~~~~g~~~~A~~~~ 172 (355)
...+|.++...|++++|...+
T Consensus 4 ~~~la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 4 RLALARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHHHHcCCHHHHHHHH
Confidence 344555555555555555444
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=93.65 E-value=0.61 Score=27.51 Aligned_cols=29 Identities=21% Similarity=0.240 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHc
Q 040440 150 EALQTLMEVRIKSQKLVEAVDVIDRLIEL 178 (355)
Q Consensus 150 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 178 (355)
..|..+...|.+.|++++|.++|+++.+.
T Consensus 4 ~~yn~li~~~~~~~~~~~a~~l~~~M~~~ 32 (50)
T PF13041_consen 4 VTYNTLISGYCKAGKFEEALKLFKEMKKR 32 (50)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence 34455555555555555555555555443
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=93.61 E-value=0.49 Score=27.93 Aligned_cols=46 Identities=20% Similarity=0.133 Sum_probs=35.1
Q ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHH
Q 040440 182 EFEWQLLKAQVQSYAGESEAAIKGFEEILRKD-PLRVEAYHGLVMAY 227 (355)
Q Consensus 182 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~ 227 (355)
+...|..+...+.+.|++++|.++|+++.+.. +-+...+..+...+
T Consensus 2 ~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~ 48 (50)
T PF13041_consen 2 DVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGL 48 (50)
T ss_pred chHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 34567788889999999999999999999875 33555565555544
|
|
| >COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.44 E-value=3.7 Score=37.84 Aligned_cols=95 Identities=16% Similarity=0.015 Sum_probs=69.2
Q ss_pred HHHHHHHHHHcCCCCHHHHHH--HHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHH-HH
Q 040440 134 KEKEIEQHLAANPNDIEALQT--LMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEE-IL 210 (355)
Q Consensus 134 A~~~~~~~l~~~p~~~~~~~~--la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~-~~ 210 (355)
++..+...+..++.+...+.. +...+...++...+.-.+...+..+|++.....+++......|....+...+.+ +.
T Consensus 50 ~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~ 129 (620)
T COG3914 50 AIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAE 129 (620)
T ss_pred HHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 455555666677777776433 366666778888888888889999999988888888888777777766666655 77
Q ss_pred hhCCCCHHHHHHHHHHHh
Q 040440 211 RKDPLRVEAYHGLVMAYD 228 (355)
Q Consensus 211 ~~~p~~~~~~~~l~~~~~ 228 (355)
...|++......+..+|.
T Consensus 130 ~~~~~~~~~~~~~~~~~~ 147 (620)
T COG3914 130 WLSPDNAEFLGHLIRFYQ 147 (620)
T ss_pred hcCcchHHHHhhHHHHHH
Confidence 777888777666644444
|
|
| >COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.42 E-value=4.1 Score=34.10 Aligned_cols=194 Identities=14% Similarity=0.064 Sum_probs=121.8
Q ss_pred cCCHHHHHHHHHHHHHcCC--------CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHc---C--CCchHHHHHHHH-HH
Q 040440 128 DVSYEEKEKEIEQHLAANP--------NDIEALQTLMEVRIKSQKLVEAVDVIDRLIEL---E--PNEFEWQLLKAQ-VQ 193 (355)
Q Consensus 128 ~~~~~~A~~~~~~~l~~~p--------~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~--~~~~~~~~~la~-~~ 193 (355)
..++++|+..|.+.+...- +.......++..|...|++..-.+.....-+. . |....+...+.. .-
T Consensus 16 ~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~KiirtLiekf~ 95 (421)
T COG5159 16 SNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIRTLIEKFP 95 (421)
T ss_pred hhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHHHHHHhcC
Confidence 3499999999999997622 12346778999999999987755555443222 1 222222222221 11
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHH------HHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHH
Q 040440 194 SYAGESEAAIKGFEEILRKDPLRVEA------YHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQI 267 (355)
Q Consensus 194 ~~~g~~~~A~~~~~~~~~~~p~~~~~------~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~ 267 (355)
.....++.-+..++..++........ -..+..++.+.|. +..++.....-+.-+++....+.-..++..-..+
T Consensus 96 ~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~-YsdalalIn~ll~ElKk~DDK~~Li~vhllESKv 174 (421)
T COG5159 96 YSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGK-YSDALALINPLLHELKKYDDKINLITVHLLESKV 174 (421)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-HHHHHHHHHHHHHHHHhhcCccceeehhhhhHHH
Confidence 23356677777777777654332222 2355667778887 5555555555555555666667777788888899
Q ss_pred HHHccCHHHHHHHHHHHHHh-----CCCChHHH--HHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 040440 268 KVMESKHSEALRVYEELVKE-----EPRDFRPY--LCQGIIYTLLRKKDEAEKQFEKFRRLV 322 (355)
Q Consensus 268 ~~~~g~~~~A~~~~~~~l~~-----~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~l~~~ 322 (355)
|...++..++..-+..+-.. .|....+. ..-|...+...+|.-|-.+|-++++-.
T Consensus 175 yh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Egf 236 (421)
T COG5159 175 YHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALEGF 236 (421)
T ss_pred HHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHhcc
Confidence 99999998888877766543 23222222 223556667778999999998887743
|
|
| >PRK13184 pknD serine/threonine-protein kinase; Reviewed | Back alignment and domain information |
|---|
Probab=93.38 E-value=9.5 Score=38.19 Aligned_cols=90 Identities=19% Similarity=0.049 Sum_probs=72.0
Q ss_pred CCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHc----c---CHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCC
Q 040440 129 VSYEEKEKEIEQHLAANPND---IEALQTLMEVRIKS----Q---KLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGE 198 (355)
Q Consensus 129 ~~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~----g---~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 198 (355)
..|+.|+..|+++-...|.. .++.+..|.....+ | .+++|+..|++.. -.|.-+--|...|.+|.++|+
T Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 567 (932)
T PRK13184 489 KLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLH-GGVGAPLEYLGKALVYQRLGE 567 (932)
T ss_pred HHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhc-CCCCCchHHHhHHHHHHHhhh
Confidence 47899999999999988875 45666677666532 2 5788888888754 345566678899999999999
Q ss_pred HHHHHHHHHHHHhhCCCCHHH
Q 040440 199 SEAAIKGFEEILRKDPLRVEA 219 (355)
Q Consensus 199 ~~~A~~~~~~~~~~~p~~~~~ 219 (355)
|++-++.|.-+++..|+++..
T Consensus 568 ~~~~~~~~~~~~~~~~~~~~~ 588 (932)
T PRK13184 568 YNEEIKSLLLALKRYSQHPEI 588 (932)
T ss_pred HHHHHHHHHHHHHhcCCCCcc
Confidence 999999999999999887754
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=93.37 E-value=1 Score=35.56 Aligned_cols=73 Identities=16% Similarity=0.038 Sum_probs=50.5
Q ss_pred HHHccCHHHHHHHHHHHHHcC-CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC----CHHHHHHHHHHHhccCc
Q 040440 159 RIKSQKLVEAVDVIDRLIELE-PNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPL----RVEAYHGLVMAYDGSDK 232 (355)
Q Consensus 159 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~~l~~~~~~~~~ 232 (355)
++..-.-++|...|-++-... -++++..+.+|..|. ..+.++++.++-+++++... +++++..|+.++...++
T Consensus 116 ~Wsr~~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~ 193 (203)
T PF11207_consen 116 HWSRFGDQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKN 193 (203)
T ss_pred HhhccCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcc
Confidence 455545567777776654332 255667777777444 67888888888888887532 57888888888888776
|
|
| >PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710) | Back alignment and domain information |
|---|
Probab=93.34 E-value=5.1 Score=35.72 Aligned_cols=60 Identities=13% Similarity=0.109 Sum_probs=41.3
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHcCCCchH--HH--HHHHHHHHHcCCHHHHHHHHHHHHhh
Q 040440 153 QTLMEVRIKSQKLVEAVDVIDRLIELEPNEFE--WQ--LLKAQVQSYAGESEAAIKGFEEILRK 212 (355)
Q Consensus 153 ~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~--~~la~~~~~~g~~~~A~~~~~~~~~~ 212 (355)
...+...+..++|..|...++.+...-|.... .+ ...|..++..-++++|.+.++..+..
T Consensus 135 ~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 135 WRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 34555667888999999999888875233222 22 23445566778888999998887765
|
|
| >KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.26 E-value=0.22 Score=42.45 Aligned_cols=126 Identities=13% Similarity=0.129 Sum_probs=87.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHH
Q 040440 188 LKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQI 267 (355)
Q Consensus 188 ~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~ 267 (355)
..+...++.++++.|..-|.++........ .. + -.+... +...........+..++.+
T Consensus 227 ~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s-----------~~-~--------~~e~~~--~~~~~~~~r~~~~~n~~~~ 284 (372)
T KOG0546|consen 227 NIGNKEFKKQRYREALAKYRKALRYLSEQS-----------RD-R--------EKEQEN--RIPPLRELRFSIRRNLAAV 284 (372)
T ss_pred ccchhhhhhccHhHHHHHHHHHhhhhcccc-----------cc-c--------cccccc--ccccccccccccccchHHh
Confidence 346667888899999888888876432100 00 0 000000 0000111222334457888
Q ss_pred HHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHH
Q 040440 268 KVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHPYREYFVDN 335 (355)
Q Consensus 268 ~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~ 335 (355)
-++.+.+..|+.....++..++....+++..+..+....++++|++.++.+....|++......+...
T Consensus 285 ~lk~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~ 352 (372)
T KOG0546|consen 285 GLKVKGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENV 352 (372)
T ss_pred cccccCCCcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHh
Confidence 88999999999998888888888899999999999999999999999999999999986654444333
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=93.16 E-value=0.21 Score=26.79 Aligned_cols=28 Identities=25% Similarity=0.443 Sum_probs=20.8
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 040440 148 DIEALQTLMEVRIKSQKLVEAVDVIDRL 175 (355)
Q Consensus 148 ~~~~~~~la~~~~~~g~~~~A~~~~~~~ 175 (355)
|...|..+...|.+.|+.++|.++|+++
T Consensus 6 d~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 6 DVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred cHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 4566777777888888888888877753
|
|
| >PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division | Back alignment and domain information |
|---|
Probab=93.15 E-value=2.5 Score=30.89 Aligned_cols=80 Identities=9% Similarity=0.054 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHHHHhhccCCchH---HHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCCH
Q 040440 234 LNEVEKRIEKAMERCKKEKKKSDLR---DFKLLIAQIKVMESKHSEALRVYEELVKEE--PRDFRPYLCQGIIYTLLRKK 308 (355)
Q Consensus 234 ~~~a~~~~~~Al~~~~~~~~~~~~~---~~~~~la~~~~~~g~~~~A~~~~~~~l~~~--~~~~~~~~~l~~~~~~~g~~ 308 (355)
.......+++++..+.......++. .+|...+. . .+.+.++|+.+.... -.....|...|..+...|++
T Consensus 42 ~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~----~--~~~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~ 115 (126)
T PF08311_consen 42 QSGLLELLERCIRKFKDDERYKNDERYLKIWIKYAD----L--SSDPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNF 115 (126)
T ss_dssp CHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHT----T--BSHHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-H
T ss_pred hhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHH----H--ccCHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCH
Confidence 3444556777777776633333332 33333332 1 228888888877643 34567788889999999999
Q ss_pred HHHHHHHHHHH
Q 040440 309 DEAEKQFEKFR 319 (355)
Q Consensus 309 ~~A~~~~~~~l 319 (355)
++|.++|+.++
T Consensus 116 ~~A~~I~~~Gi 126 (126)
T PF08311_consen 116 KKADEIYQLGI 126 (126)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhhC
Confidence 99999988764
|
This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B. |
| >PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal | Back alignment and domain information |
|---|
Probab=93.09 E-value=0.92 Score=39.84 Aligned_cols=59 Identities=19% Similarity=0.156 Sum_probs=52.9
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 040440 261 KLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFR 319 (355)
Q Consensus 261 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 319 (355)
...+..||.+.++.+-|+....+.+.++|..+..+...+.++..+.+|.+|..-+-.+.
T Consensus 231 etklv~CYL~~rkpdlALnh~hrsI~lnP~~frnHLrqAavfR~LeRy~eAarSamia~ 289 (569)
T PF15015_consen 231 ETKLVTCYLRMRKPDLALNHSHRSINLNPSYFRNHLRQAAVFRRLERYSEAARSAMIAD 289 (569)
T ss_pred HHHHHHhhhhcCCCchHHHHHhhhhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678899999999999999999999999999999999999999999999987665543
|
|
| >KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=93.00 E-value=5.1 Score=34.06 Aligned_cols=184 Identities=12% Similarity=0.129 Sum_probs=102.7
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHc--CC--CchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 040440 135 EKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIEL--EP--NEFEWQLLKAQVQSYAGESEAAIKGFEEIL 210 (355)
Q Consensus 135 ~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 210 (355)
.+.+++-....|+..++++..+...+..|+|..|-.++-..... ++ +...+.+..-..-.-..+|+.|++.+.+.-
T Consensus 115 l~~L~e~ynf~~e~i~~lykyakfqyeCGNY~gAs~yLY~~r~l~~~~d~n~lsalwGKlASEIL~qnWd~A~edL~rLr 194 (432)
T KOG2758|consen 115 LQHLQEHYNFTPERIETLYKYAKFQYECGNYSGASDYLYFYRALVSDPDRNYLSALWGKLASEILTQNWDGALEDLTRLR 194 (432)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 34444444567888999999999999999999998876554443 22 233333333333556789999999988776
Q ss_pred hhCC-CC--H--HH-----H--HHHHHHHhc--cCchHHHHHH------HHHHHHHHHHhhccCCchHHHHHHHHHHHHH
Q 040440 211 RKDP-LR--V--EA-----Y--HGLVMAYDG--SDKKLNEVEK------RIEKAMERCKKEKKKSDLRDFKLLIAQIKVM 270 (355)
Q Consensus 211 ~~~p-~~--~--~~-----~--~~l~~~~~~--~~~~~~~a~~------~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~ 270 (355)
+.-. +. . .. | .+-..++.. .|+ +...+ .|-.||+. .-+.++..++..-.-
T Consensus 195 e~IDs~~f~~~~~~l~qRtWLiHWslfv~fnhpkgr--d~iid~fly~p~YLNaIQt--------~cPhllRYLatAvvt 264 (432)
T KOG2758|consen 195 EYIDSKSFSTSAQQLQQRTWLIHWSLFVFFNHPKGR--DTIIDMFLYQPPYLNAIQT--------SCPHLLRYLATAVVT 264 (432)
T ss_pred HHHcccccccHHHHHHHHHHHHHHHHHhhccCCChh--hHHHHHHccCHHHHHHHHh--------hCHHHHHHHHHHhhc
Confidence 6521 11 1 11 1 111111221 221 11110 01222221 112333334433332
Q ss_pred -ccCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhH
Q 040440 271 -ESKHSEALRVYEELVKEEPR-DFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHPY 328 (355)
Q Consensus 271 -~g~~~~A~~~~~~~l~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 328 (355)
..+...+++.+-++++.... ..+.....-.|++-.=+++.|...++++-+.--+|+-.
T Consensus 265 nk~~rr~~lkdlvkVIqqE~ysYkDPiteFl~clyvn~DFdgAq~kl~eCeeVl~nDfFL 324 (432)
T KOG2758|consen 265 NKRRRRNRLKDLVKVIQQESYSYKDPITEFLECLYVNYDFDGAQKKLRECEEVLVNDFFL 324 (432)
T ss_pred chHhhHHHHHHHHHHHHHhccccCCcHHHHHHHHhhccchHHHHHHHHHHHHHHhcchhH
Confidence 36677788888888765432 22233444556666779999999999988876666433
|
|
| >PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=92.82 E-value=0.31 Score=26.96 Aligned_cols=30 Identities=20% Similarity=0.121 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 040440 293 RPYLCQGIIYTLLRKKDEAEKQFEKFRRLV 322 (355)
Q Consensus 293 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 322 (355)
+++..+|.+-...++|++|..-|++++++.
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~ 31 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQ 31 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 356677777777777777777777777653
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat []. |
| >PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ] | Back alignment and domain information |
|---|
Probab=92.81 E-value=4.7 Score=33.19 Aligned_cols=167 Identities=18% Similarity=0.191 Sum_probs=91.1
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHcCCCch-HHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHh
Q 040440 152 LQTLMEVRIKSQKLVEAVDVIDRLIELEPNEF-EWQLLKAQVQS-YAGESEAAIKGFEEILRKDPLR-VEAYHGLVMAYD 228 (355)
Q Consensus 152 ~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~la~~~~-~~g~~~~A~~~~~~~~~~~p~~-~~~~~~l~~~~~ 228 (355)
+..+|.+..+.|+|++.+.++++++..+++-. +-...++.+|- ..|....+...+.......... ......+..-|.
T Consensus 4 li~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~~~~~~~i~~yk 83 (236)
T PF00244_consen 4 LIYLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENKGNEKQVKLIKDYK 83 (236)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcccchhHHHHHHHHHH
Confidence 56788888999999999999999998866432 23444444442 3455555666555554443222 122222222221
Q ss_pred ccCchHHHHHHHHHHHHHHHHh--hcc--CCchHHH-HHHHHHHHHHc-----c-----CHHHHHHHHHHHHH-----hC
Q 040440 229 GSDKKLNEVEKRIEKAMERCKK--EKK--KSDLRDF-KLLIAQIKVME-----S-----KHSEALRVYEELVK-----EE 288 (355)
Q Consensus 229 ~~~~~~~~a~~~~~~Al~~~~~--~~~--~~~~~~~-~~~la~~~~~~-----g-----~~~~A~~~~~~~l~-----~~ 288 (355)
. .-.++......+.+.+++. ... .+....+ +-..|..|... | -.++|...|++++. +.
T Consensus 84 ~--kie~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~ 161 (236)
T PF00244_consen 84 K--KIEDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEAYEEALEIAKKELP 161 (236)
T ss_dssp H--HHHHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred H--HHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHHhhhhHHHHHhcccC
Confidence 1 1133444556677777776 111 1222222 22345544322 1 23678888888875 35
Q ss_pred CCChH---HHHHHHHHH-HHcCCHHHHHHHHHHHHH
Q 040440 289 PRDFR---PYLCQGIIY-TLLRKKDEAEKQFEKFRR 320 (355)
Q Consensus 289 ~~~~~---~~~~l~~~~-~~~g~~~~A~~~~~~~l~ 320 (355)
|.++. ...+.+..| ..+|+.++|.+..++++.
T Consensus 162 ~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd 197 (236)
T PF00244_consen 162 PTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFD 197 (236)
T ss_dssp TTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 55542 334444444 558999999998888765
|
There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A .... |
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=92.68 E-value=0.31 Score=26.11 Aligned_cols=27 Identities=26% Similarity=0.176 Sum_probs=19.7
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHH
Q 040440 291 DFRPYLCQGIIYTLLRKKDEAEKQFEK 317 (355)
Q Consensus 291 ~~~~~~~l~~~~~~~g~~~~A~~~~~~ 317 (355)
|...|..+...|.+.|+.++|.+.|++
T Consensus 6 d~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 6 DVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred cHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 556677777777777777777777765
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=92.67 E-value=3.2 Score=30.84 Aligned_cols=47 Identities=13% Similarity=0.170 Sum_probs=26.0
Q ss_pred HHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHH
Q 040440 160 IKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFE 207 (355)
Q Consensus 160 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 207 (355)
...+.....+.+++.++..++.+...+..+..+|.+. +..+.++.++
T Consensus 18 ~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~-~~~~ll~~l~ 64 (140)
T smart00299 18 EKRNLLEELIPYLESALKLNSENPALQTKLIELYAKY-DPQKEIERLD 64 (140)
T ss_pred HhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHH-CHHHHHHHHH
Confidence 3445666666777766666555555666666665543 2333344433
|
|
| >PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=92.31 E-value=0.29 Score=27.06 Aligned_cols=27 Identities=15% Similarity=0.385 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH
Q 040440 151 ALQTLMEVRIKSQKLVEAVDVIDRLIE 177 (355)
Q Consensus 151 ~~~~la~~~~~~g~~~~A~~~~~~~~~ 177 (355)
++..+|.+-...++|++|+.-|+++++
T Consensus 3 v~~~Lgeisle~e~f~qA~~D~~~aL~ 29 (38)
T PF10516_consen 3 VYDLLGEISLENENFEQAIEDYEKALE 29 (38)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 344455555555555555555555443
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat []. |
| >KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.04 E-value=8.2 Score=34.10 Aligned_cols=168 Identities=13% Similarity=0.121 Sum_probs=107.1
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH------------ccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcC
Q 040440 130 SYEEKEKEIEQHLAANPNDIEALQTLMEVRIK------------SQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAG 197 (355)
Q Consensus 130 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~------------~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g 197 (355)
--+++++.-.+.++.+|+...+|+..-.++.. ..-+++-+.+...+++.+|+...+|+.+..++.+.+
T Consensus 44 yd~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p 123 (421)
T KOG0529|consen 44 YDEEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNP 123 (421)
T ss_pred cchHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCC
Confidence 34567777788888899887777654444332 234667788888899999999999999999888776
Q ss_pred --CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHHH----
Q 040440 198 --ESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQIKVM---- 270 (355)
Q Consensus 198 --~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~~---- 270 (355)
++..-+.+.+++++.+|.+..+|...=.++......-. ...+-+++..+ +..+..+..+|.....+.-.
T Consensus 124 ~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~----~~~~El~ftt~~I~~nfSNYsaWhyRs~lL~~l~~~ 199 (421)
T KOG0529|consen 124 HSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRN----LEKEELEFTTKLINDNFSNYSAWHYRSLLLSTLHPK 199 (421)
T ss_pred CchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccc----cchhHHHHHHHHHhccchhhhHHHHHHHHHHHhccc
Confidence 46788899999999999988887654444333222100 02233344444 33455555555555444431
Q ss_pred --ccC------HHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 040440 271 --ESK------HSEALRVYEELVKEEPRDFRPYLCQGII 301 (355)
Q Consensus 271 --~g~------~~~A~~~~~~~l~~~~~~~~~~~~l~~~ 301 (355)
.|+ ...-++....++-.+|+|..+|+..-..
T Consensus 200 ~~~g~~~~~~~l~sEle~v~saiFTdp~DqS~WfY~rWL 238 (421)
T KOG0529|consen 200 EADGNFMPKELLQSELEMVHSAIFTDPEDQSCWFYHRWL 238 (421)
T ss_pred cccCccCCHHHHHHHHHHHHHHHhcCccccceeeehHHh
Confidence 231 2334455556666788888888774333
|
|
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=91.51 E-value=0.51 Score=27.07 Aligned_cols=23 Identities=17% Similarity=0.173 Sum_probs=13.1
Q ss_pred HHHHHHHHccCHHHHHHHHHHHH
Q 040440 263 LIAQIKVMESKHSEALRVYEELV 285 (355)
Q Consensus 263 ~la~~~~~~g~~~~A~~~~~~~l 285 (355)
.+|..|+..|+.+.|.+.+++++
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVI 26 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHH
Confidence 44555555555555555555555
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.51 E-value=1.2 Score=37.18 Aligned_cols=116 Identities=23% Similarity=0.179 Sum_probs=68.3
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHH----HHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHH
Q 040440 130 SYEEKEKEIEQHLAANPNDIEALQTLMEVR----IKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKG 205 (355)
Q Consensus 130 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~----~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 205 (355)
|+.+-+...+++-..+ ...+-+..+...| +...+|.=|...=+++-.+ ........+..|...|.+.+|+.+
T Consensus 226 Dv~e~es~~rqi~~in-ltide~kelv~~ykgdyl~e~~y~Waedererle~l---y~kllgkva~~yle~g~~neAi~l 301 (361)
T COG3947 226 DVQEYESLARQIEAIN-LTIDELKELVGQYKGDYLPEADYPWAEDERERLEQL---YMKLLGKVARAYLEAGKPNEAIQL 301 (361)
T ss_pred cHHHHHHHhhhhhccc-cCHHHHHHHHHHhcCCcCCccccccccchHHHHHHH---HHHHHHHHHHHHHHcCChHHHHHH
Confidence 5556566666655555 4444444444433 1222222222221111111 112344566778888999999999
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh
Q 040440 206 FEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK 250 (355)
Q Consensus 206 ~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~ 250 (355)
.++++..+|-+...+..+..++...|+. -.+.+.|+.--+.++.
T Consensus 302 ~qr~ltldpL~e~~nk~lm~~la~~gD~-is~~khyerya~vlea 345 (361)
T COG3947 302 HQRALTLDPLSEQDNKGLMASLATLGDE-ISAIKHYERYAEVLEA 345 (361)
T ss_pred HHHHhhcChhhhHHHHHHHHHHHHhccc-hhhhhHHHHHHHHHHH
Confidence 9999999999999999999999888883 3444445544444444
|
|
| >KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=91.35 E-value=8.5 Score=32.92 Aligned_cols=103 Identities=18% Similarity=0.132 Sum_probs=68.6
Q ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC---CCHH---HHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCC
Q 040440 182 EFEWQLLKAQVQSYAGESEAAIKGFEEILRKDP---LRVE---AYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKS 255 (355)
Q Consensus 182 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p---~~~~---~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~ 255 (355)
..+++..++..|++.||.+.|.+.+.+..+..- .-.+ ....+|..|.. .+-..+..++|-.++++.....
T Consensus 103 v~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D----~~lV~~~iekak~liE~GgDWe 178 (393)
T KOG0687|consen 103 VREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLD----HDLVTESIEKAKSLIEEGGDWE 178 (393)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhcc----HHHHHHHHHHHHHHHHhCCChh
Confidence 345888999999999999999998888776531 1112 23345555533 3344455777777777755444
Q ss_pred chHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q 040440 256 DLRDFKLLIAQIKVMESKHSEALRVYEELVKEE 288 (355)
Q Consensus 256 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 288 (355)
....+....|.......++.+|-..|-..+...
T Consensus 179 RrNRlKvY~Gly~msvR~Fk~Aa~Lfld~vsTF 211 (393)
T KOG0687|consen 179 RRNRLKVYQGLYCMSVRNFKEAADLFLDSVSTF 211 (393)
T ss_pred hhhhHHHHHHHHHHHHHhHHHHHHHHHHHcccc
Confidence 444455556666677788999998888876543
|
|
| >smart00386 HAT HAT (Half-A-TPR) repeats | Back alignment and domain information |
|---|
Probab=91.29 E-value=0.64 Score=24.07 Aligned_cols=30 Identities=17% Similarity=0.308 Sum_probs=21.8
Q ss_pred cCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 040440 272 SKHSEALRVYEELVKEEPRDFRPYLCQGII 301 (355)
Q Consensus 272 g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~ 301 (355)
|+.+.|..+|++++...|.+...|...+..
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~ 30 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEF 30 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 456777888888888777777777766543
|
Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs. |
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=90.99 E-value=0.54 Score=26.97 Aligned_cols=27 Identities=15% Similarity=0.069 Sum_probs=24.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 040440 295 YLCQGIIYTLLRKKDEAEKQFEKFRRL 321 (355)
Q Consensus 295 ~~~l~~~~~~~g~~~~A~~~~~~~l~~ 321 (355)
.+.++.+|..+|+.+.|.+.+++++..
T Consensus 2 kLdLA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 2 KLDLARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred chHHHHHHHHcCChHHHHHHHHHHHHc
Confidence 367899999999999999999999953
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ] | Back alignment and domain information |
|---|
Probab=90.76 E-value=1.4 Score=37.28 Aligned_cols=62 Identities=10% Similarity=-0.045 Sum_probs=30.6
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHH
Q 040440 134 KEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSY 195 (355)
Q Consensus 134 A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 195 (355)
|+.+|.+++...|++...++.+|.++...|+.=.|+-+|-+++-.....+.+..++...+.+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 44555555555555555555555555555555555555555553322233444444444443
|
This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B. |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=90.74 E-value=0.47 Score=24.34 Aligned_cols=26 Identities=27% Similarity=0.374 Sum_probs=15.6
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHH
Q 040440 152 LQTLMEVRIKSQKLVEAVDVIDRLIE 177 (355)
Q Consensus 152 ~~~la~~~~~~g~~~~A~~~~~~~~~ 177 (355)
|..+...|.+.|++++|.+.|+++.+
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhH
Confidence 45555566666666666666666543
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >smart00386 HAT HAT (Half-A-TPR) repeats | Back alignment and domain information |
|---|
Probab=90.50 E-value=1 Score=23.23 Aligned_cols=27 Identities=33% Similarity=0.326 Sum_probs=13.6
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 040440 198 ESEAAIKGFEEILRKDPLRVEAYHGLV 224 (355)
Q Consensus 198 ~~~~A~~~~~~~~~~~p~~~~~~~~l~ 224 (355)
+.+.+...|++++...|.+...|...+
T Consensus 2 ~~~~~r~i~e~~l~~~~~~~~~W~~y~ 28 (33)
T smart00386 2 DIERARKIYERALEKFPKSVELWLKYA 28 (33)
T ss_pred cHHHHHHHHHHHHHHCCCChHHHHHHH
Confidence 444555555555555555555544433
|
Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs. |
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=90.46 E-value=5.5 Score=29.22 Aligned_cols=56 Identities=21% Similarity=0.191 Sum_probs=41.7
Q ss_pred HHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 040440 267 IKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLV 322 (355)
Q Consensus 267 ~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 322 (355)
+...+|+-++-.++++...+....++.....+|.+|.+.|+..++.+.+.++-+..
T Consensus 95 ~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 95 ILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 44678888888888888887666689999999999999999999999999987753
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal | Back alignment and domain information |
|---|
Probab=90.16 E-value=7.3 Score=34.54 Aligned_cols=52 Identities=23% Similarity=0.236 Sum_probs=30.0
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHH
Q 040440 154 TLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKG 205 (355)
Q Consensus 154 ~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 205 (355)
.+..||...++.+-|+....+.|.++|....-+...+.++..+.+|.+|-..
T Consensus 233 klv~CYL~~rkpdlALnh~hrsI~lnP~~frnHLrqAavfR~LeRy~eAarS 284 (569)
T PF15015_consen 233 KLVTCYLRMRKPDLALNHSHRSINLNPSYFRNHLRQAAVFRRLERYSEAARS 284 (569)
T ss_pred HHHHhhhhcCCCchHHHHHhhhhhcCcchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666666666666666666665555555555555555555555443
|
|
| >PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I | Back alignment and domain information |
|---|
Probab=89.97 E-value=8.4 Score=30.59 Aligned_cols=66 Identities=14% Similarity=0.133 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHH-HHHHHcCCHHHHHHHHHHHHhhCC
Q 040440 149 IEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKA-QVQSYAGESEAAIKGFEEILRKDP 214 (355)
Q Consensus 149 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la-~~~~~~g~~~~A~~~~~~~~~~~p 214 (355)
...+..+-......|||+.|-..|--++...+-+......+| .++.+.+.-....++++.+....+
T Consensus 41 l~~L~~lLh~~llr~d~~rA~Raf~lLiR~~~VDiR~~W~iG~eIL~~~~~~~~~~~fl~~l~~~y~ 107 (199)
T PF04090_consen 41 LRVLTDLLHLCLLRGDWDRAYRAFGLLIRCPEVDIRSLWGIGAEILMRRGEQNSELEFLEWLISFYP 107 (199)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHcCCCCChHhcchHHHHHHHcCCCcchHHHHHHHHHHHHH
Confidence 445666777788999999999999999887665655555565 556666655555566666666554
|
Binding to the DNA template is dependent on the initial binding of other factors []. |
| >PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [] | Back alignment and domain information |
|---|
Probab=89.92 E-value=2.4 Score=37.74 Aligned_cols=97 Identities=11% Similarity=0.075 Sum_probs=61.3
Q ss_pred HHHHHHHHhccCchHHHHHHHHHHHHHHHHhhcc---------CCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Q 040440 220 YHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKK---------KSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPR 290 (355)
Q Consensus 220 ~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~---------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~ 290 (355)
..++.+++.-.|+ |..|++.++.... .+-...+++.+|-+|..+++|.+|++.|...+-.-..
T Consensus 125 ligLlRvh~LLGD--------Y~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r 196 (404)
T PF10255_consen 125 LIGLLRVHCLLGD--------YYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQR 196 (404)
T ss_pred HHHHHHHHHhccC--------HHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466777888888 9999998887322 2234456888999999999999999999988753211
Q ss_pred ChHHHHHHHHH-HHHcCCHHHHHHHHHHHHHhCCC
Q 040440 291 DFRPYLCQGII-YTLLRKKDEAEKQFEKFRRLVPR 324 (355)
Q Consensus 291 ~~~~~~~l~~~-~~~~g~~~~A~~~~~~~l~~~p~ 324 (355)
....+.....- -.-.+..++....+--++.+.|.
T Consensus 197 ~k~~~~~~~~q~d~i~K~~eqMyaLlAic~~l~p~ 231 (404)
T PF10255_consen 197 TKNQYHQRSYQYDQINKKNEQMYALLAICLSLCPQ 231 (404)
T ss_pred hhhhhccccchhhHHHhHHHHHHHHHHHHHHhCCC
Confidence 11000111111 11124456666666667777775
|
|
| >KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.45 E-value=13 Score=31.97 Aligned_cols=51 Identities=18% Similarity=0.152 Sum_probs=36.8
Q ss_pred hccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Q 040440 126 REDVSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIEL 178 (355)
Q Consensus 126 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 178 (355)
....+..+-++....+++++|+...++..++.-- ..-..+|...++++++.
T Consensus 195 WRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEEE--a~Ti~~AE~l~k~ALka 245 (556)
T KOG3807|consen 195 WRERNPPARIKAAYQALEINNECATAYVLLAEEE--ATTIVDAERLFKQALKA 245 (556)
T ss_pred HHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhhh--hhhHHHHHHHHHHHHHH
Confidence 3344777778888999999999999998887642 23456677777776653
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=89.37 E-value=0.72 Score=23.59 Aligned_cols=25 Identities=24% Similarity=0.275 Sum_probs=13.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Q 040440 295 YLCQGIIYTLLRKKDEAEKQFEKFR 319 (355)
Q Consensus 295 ~~~l~~~~~~~g~~~~A~~~~~~~l 319 (355)
|..+...|.+.|++++|.+.|++..
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~ 27 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMR 27 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHh
Confidence 4445555555555555555555443
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >COG3014 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=89.17 E-value=14 Score=31.92 Aligned_cols=35 Identities=9% Similarity=0.083 Sum_probs=28.9
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 040440 291 DFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRN 325 (355)
Q Consensus 291 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~ 325 (355)
++.+-+..+..+.-.|++.++..++.+..-+.|+.
T Consensus 212 npYv~Yl~~lf~a~n~dv~kg~~~~~e~~gi~qd~ 246 (449)
T COG3014 212 NPYVSYLSGLFYALNGDVNKGLGYLNEAYGISQDQ 246 (449)
T ss_pred hHHHHHHHHHhcccCccHhHHHHHHHHHhccCchh
Confidence 45666777888888899999999999999888874
|
|
| >PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane | Back alignment and domain information |
|---|
Probab=88.89 E-value=4.3 Score=26.63 Aligned_cols=54 Identities=7% Similarity=-0.094 Sum_probs=40.7
Q ss_pred HHHccCHHHHHHHHHHHHHhCCCChHHH---HHHHHHHHHcCCHHHHHHHHHHHHHh
Q 040440 268 KVMESKHSEALRVYEELVKEEPRDFRPY---LCQGIIYTLLRKKDEAEKQFEKFRRL 321 (355)
Q Consensus 268 ~~~~g~~~~A~~~~~~~l~~~~~~~~~~---~~l~~~~~~~g~~~~A~~~~~~~l~~ 321 (355)
++...+.++|+..++++++..++...-+ -.+..+|...|++.+++++--.-+++
T Consensus 16 LY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~ 72 (80)
T PF10579_consen 16 LYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEI 72 (80)
T ss_pred HhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567889999999999999877665544 45566788889998888876554443
|
Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=88.74 E-value=6.4 Score=39.56 Aligned_cols=49 Identities=20% Similarity=0.167 Sum_probs=23.0
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHH
Q 040440 262 LLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEK 317 (355)
Q Consensus 262 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 317 (355)
..|+.-+..++++-+|-++..+.+.. | -..-..|.+...|++|+.....
T Consensus 1003 ~~L~s~L~e~~kh~eAa~il~e~~sd-~------~~av~ll~ka~~~~eAlrva~~ 1051 (1265)
T KOG1920|consen 1003 EELVSRLVEQRKHYEAAKILLEYLSD-P------EEAVALLCKAKEWEEALRVASK 1051 (1265)
T ss_pred HHHHHHHHHcccchhHHHHHHHHhcC-H------HHHHHHHhhHhHHHHHHHHHHh
Confidence 34444455556655555555554331 1 1122334444456666555443
|
|
| >COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=88.70 E-value=9.9 Score=31.99 Aligned_cols=84 Identities=8% Similarity=0.084 Sum_probs=55.1
Q ss_pred HHHHHHHHHHhhccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---Ch---HHHHHHHHHHHHcCCHHHHHH
Q 040440 240 RIEKAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPR---DF---RPYLCQGIIYTLLRKKDEAEK 313 (355)
Q Consensus 240 ~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~---~~---~~~~~l~~~~~~~g~~~~A~~ 313 (355)
.++++++-.+..+......+++.++|..|.+.++.+.+.+.+.+.+...-. .. -....+|.+|..+.-.++-++
T Consensus 97 Elde~i~~~eedngE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE 176 (412)
T COG5187 97 ELDERIREKEEDNGETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLE 176 (412)
T ss_pred HHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHH
Confidence 366666666555555566778888999999999999999888887764321 12 233456666666555566666
Q ss_pred HHHHHHHhCC
Q 040440 314 QFEKFRRLVP 323 (355)
Q Consensus 314 ~~~~~l~~~p 323 (355)
..+..++..-
T Consensus 177 ~~~~~iEkGg 186 (412)
T COG5187 177 VADDIIEKGG 186 (412)
T ss_pred HHHHHHHhCC
Confidence 6666665543
|
|
| >KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=88.67 E-value=7.2 Score=37.29 Aligned_cols=105 Identities=15% Similarity=0.171 Sum_probs=63.3
Q ss_pred hccC-CHHHHHHHHHHHHHcCCCCHH------HHHHHHHHH---HHccCHHHHHHHHHHHHHcCC-CchHHHHHHHHHHH
Q 040440 126 REDV-SYEEKEKEIEQHLAANPNDIE------ALQTLMEVR---IKSQKLVEAVDVIDRLIELEP-NEFEWQLLKAQVQS 194 (355)
Q Consensus 126 ~~~~-~~~~A~~~~~~~l~~~p~~~~------~~~~la~~~---~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~ 194 (355)
|.+- ||+.-+++.+.. +.-|+..+ ..+..+.++ -+-||-++|+...-.+++... -.++.+...|++|-
T Consensus 211 yRDvQdY~amirLVe~L-k~iP~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vapDm~Cl~GRIYK 289 (1226)
T KOG4279|consen 211 YRDVQDYDAMIRLVEDL-KRIPDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAPDMYCLCGRIYK 289 (1226)
T ss_pred hccccchHHHHHHHHHH-HhCcchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCCceeeeechhhh
Confidence 4444 888888777664 33443211 111122222 245889999999988888743 34455555565553
Q ss_pred ---------HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCc
Q 040440 195 ---------YAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDK 232 (355)
Q Consensus 195 ---------~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 232 (355)
..+..+.|+++|+++.+..|..... .+++.++...|+
T Consensus 290 DmF~~S~ytDa~s~~~a~~WyrkaFeveP~~~sG-IN~atLL~aaG~ 335 (1226)
T KOG4279|consen 290 DMFIASNYTDAESLNHAIEWYRKAFEVEPLEYSG-INLATLLRAAGE 335 (1226)
T ss_pred hhhhccCCcchhhHHHHHHHHHHHhccCchhhcc-ccHHHHHHHhhh
Confidence 3456778999999999998854322 334555555554
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=88.58 E-value=1.2 Score=23.34 Aligned_cols=26 Identities=23% Similarity=0.451 Sum_probs=15.4
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHH
Q 040440 152 LQTLMEVRIKSQKLVEAVDVIDRLIE 177 (355)
Q Consensus 152 ~~~la~~~~~~g~~~~A~~~~~~~~~ 177 (355)
|..+...|.+.|++++|.++|+++.+
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~ 28 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLE 28 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44555566666666666666666544
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=88.36 E-value=2.2 Score=33.91 Aligned_cols=50 Identities=26% Similarity=0.379 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 040440 274 HSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPR 324 (355)
Q Consensus 274 ~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~ 324 (355)
.+..++..++.+...| ++.++..++.++...|+.++|....+++..+.|.
T Consensus 127 l~~~~~~a~~~l~~~P-~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~ 176 (193)
T PF11846_consen 127 LEAYIEWAERLLRRRP-DPNVYQRYALALALLGDPEEARQWLARARRLYPA 176 (193)
T ss_pred HHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 4455666677777778 7888999999999999999999999999999994
|
This domain is found in bacteria. This presumed domain is about 200 amino acids in length. |
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=88.28 E-value=9 Score=35.67 Aligned_cols=71 Identities=21% Similarity=0.040 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 040440 132 EEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILR 211 (355)
Q Consensus 132 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 211 (355)
-+...+.+++++..++... .+ .+..+.|+++.|.++..++ ++..-|..||.+....|++..|.++|.++..
T Consensus 624 le~~g~~e~AL~~s~D~d~-rF---elal~lgrl~iA~~la~e~-----~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d 694 (794)
T KOG0276|consen 624 LESQGMKEQALELSTDPDQ-RF---ELALKLGRLDIAFDLAVEA-----NSEVKWRQLGDAALSAGELPLASECFLRARD 694 (794)
T ss_pred hhhccchHhhhhcCCChhh-hh---hhhhhcCcHHHHHHHHHhh-----cchHHHHHHHHHHhhcccchhHHHHHHhhcc
Confidence 3334455555555544322 22 2345667777777765543 4556788888888888999999888887754
|
|
| >PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ] | Back alignment and domain information |
|---|
Probab=88.17 E-value=2.3 Score=35.92 Aligned_cols=62 Identities=19% Similarity=0.088 Sum_probs=52.2
Q ss_pred HHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhc
Q 040440 168 AVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDG 229 (355)
Q Consensus 168 A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 229 (355)
|+.+|.+|+.+.|.....+..+|.++...|+.-+|+-+|-+++-.....+.+..++...+.+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 68899999999999999999999999999999999999999997765567778888877776
|
This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B. |
| >KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=88.11 E-value=9.9 Score=33.61 Aligned_cols=99 Identities=15% Similarity=0.166 Sum_probs=79.2
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcc--CHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHc----CCHHHHH
Q 040440 130 SYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQ--KLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYA----GESEAAI 203 (355)
Q Consensus 130 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~----g~~~~A~ 203 (355)
-+++-+.+...+++.+|+...+|+....++.+.+ ++..=+.+.+++++.+|.+-.+|...-.+.... ....+=+
T Consensus 90 ~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El 169 (421)
T KOG0529|consen 90 LLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEEL 169 (421)
T ss_pred hhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHH
Confidence 4577788999999999999999999999998766 468899999999999998877665544433332 2356778
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHh
Q 040440 204 KGFEEILRKDPLRVEAYHGLVMAYD 228 (355)
Q Consensus 204 ~~~~~~~~~~p~~~~~~~~l~~~~~ 228 (355)
++..+++..++.|..+|.....+..
T Consensus 170 ~ftt~~I~~nfSNYsaWhyRs~lL~ 194 (421)
T KOG0529|consen 170 EFTTKLINDNFSNYSAWHYRSLLLS 194 (421)
T ss_pred HHHHHHHhccchhhhHHHHHHHHHH
Confidence 8899999989999999887776654
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=87.38 E-value=1.6 Score=22.86 Aligned_cols=28 Identities=14% Similarity=-0.013 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 040440 294 PYLCQGIIYTLLRKKDEAEKQFEKFRRL 321 (355)
Q Consensus 294 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 321 (355)
.|..+...|.+.|++++|.+.|++..+.
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~ 29 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLER 29 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 4667777888888888888888877653
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A | Back alignment and domain information |
|---|
Probab=87.33 E-value=5 Score=29.92 Aligned_cols=50 Identities=18% Similarity=0.246 Sum_probs=33.8
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcC
Q 040440 148 DIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAG 197 (355)
Q Consensus 148 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g 197 (355)
..+.....+...+..|++.-|.++.+.++..+|++..+...++.++.+.|
T Consensus 69 G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg 118 (141)
T PF14863_consen 69 GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLG 118 (141)
T ss_dssp CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence 34556666777777788888888888888888877777777777666554
|
|
| >PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [] | Back alignment and domain information |
|---|
Probab=87.24 E-value=5.6 Score=35.48 Aligned_cols=29 Identities=24% Similarity=0.516 Sum_probs=18.7
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 040440 291 DFRPYLCQGIIYTLLRKKDEAEKQFEKFR 319 (355)
Q Consensus 291 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 319 (355)
...+++.+|-+|..+++|.+|++.|...+
T Consensus 163 ~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 163 HISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred heehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666666666666654
|
|
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.10 E-value=14 Score=29.75 Aligned_cols=59 Identities=15% Similarity=0.197 Sum_probs=40.6
Q ss_pred HHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 040440 158 VRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLR 216 (355)
Q Consensus 158 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~ 216 (355)
-+.+.+..++++...+.-++..|.+......+-.+++-.|+|++|..-++-+-++.|++
T Consensus 10 eLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~ 68 (273)
T COG4455 10 ELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQD 68 (273)
T ss_pred HHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCccc
Confidence 44566667777777777777777776666666677777777777777777776666654
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=86.57 E-value=2.2 Score=22.32 Aligned_cols=27 Identities=19% Similarity=0.274 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH
Q 040440 151 ALQTLMEVRIKSQKLVEAVDVIDRLIE 177 (355)
Q Consensus 151 ~~~~la~~~~~~g~~~~A~~~~~~~~~ 177 (355)
.|..+...+.+.|+++.|..+|+.+.+
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~ 29 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKE 29 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 345555566666666666666666544
|
|
| >PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710) | Back alignment and domain information |
|---|
Probab=85.86 E-value=23 Score=31.67 Aligned_cols=44 Identities=32% Similarity=0.363 Sum_probs=31.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH--HHHHHHHHHhc
Q 040440 186 QLLKAQVQSYAGESEAAIKGFEEILRKDPLRVE--AYHGLVMAYDG 229 (355)
Q Consensus 186 ~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~--~~~~l~~~~~~ 229 (355)
....+...+..++|..|.+.++.+...-|.... .+..++..|..
T Consensus 134 ~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~ 179 (379)
T PF09670_consen 134 EWRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDA 179 (379)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHH
Confidence 345566788999999999999999986344333 45555555544
|
|
| >KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=85.62 E-value=22 Score=30.52 Aligned_cols=82 Identities=12% Similarity=0.110 Sum_probs=52.0
Q ss_pred HHHHHHHHHHhhccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC------CChHHHHHHHHHHHHcCCHHHHHH
Q 040440 240 RIEKAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEP------RDFRPYLCQGIIYTLLRKKDEAEK 313 (355)
Q Consensus 240 ~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~------~~~~~~~~l~~~~~~~g~~~~A~~ 313 (355)
.++++++-.++........+++...|..|.+.|+.+.|++.+.+..+..- +-.-....+|..|..+.-..+-++
T Consensus 86 eld~~iedaeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~ie 165 (393)
T KOG0687|consen 86 ELDEKIEDAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIE 165 (393)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHH
Confidence 35666666555545566678889999999999999999999988776432 112234456666655544444444
Q ss_pred HHHHHHHh
Q 040440 314 QFEKFRRL 321 (355)
Q Consensus 314 ~~~~~l~~ 321 (355)
-.+..++.
T Consensus 166 kak~liE~ 173 (393)
T KOG0687|consen 166 KAKSLIEE 173 (393)
T ss_pred HHHHHHHh
Confidence 44444443
|
|
| >PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ] | Back alignment and domain information |
|---|
Probab=85.53 E-value=19 Score=29.67 Aligned_cols=158 Identities=16% Similarity=0.106 Sum_probs=83.6
Q ss_pred CCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHH-HccCHHHHHHHHHHHHHcCCCch-HHHHHHHHHHHHcCCHHHHHHH
Q 040440 129 VSYEEKEKEIEQHLAANPN-DIEALQTLMEVRI-KSQKLVEAVDVIDRLIELEPNEF-EWQLLKAQVQSYAGESEAAIKG 205 (355)
Q Consensus 129 ~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~-~~g~~~~A~~~~~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~ 205 (355)
++|++.+..+++++..+++ +.+-...+..+|- ..|....+...+....+...... .....+..-|. ..=-++-...
T Consensus 15 eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~~~~~~~i~~yk-~kie~EL~~~ 93 (236)
T PF00244_consen 15 ERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENKGNEKQVKLIKDYK-KKIEDELIDI 93 (236)
T ss_dssp THHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHH-HHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcccchhHHHHHHHHHH-HHHHHHHHHH
Confidence 4999999999999998776 4555566666653 34556666666665554432221 11112211111 1111122222
Q ss_pred HHHHHhh-------CCCCHHH----HHHHHHHHhc-----cCc----hHHHHHHHHHHHHHHHHh--hccCCchHHHHHH
Q 040440 206 FEEILRK-------DPLRVEA----YHGLVMAYDG-----SDK----KLNEVEKRIEKAMERCKK--EKKKSDLRDFKLL 263 (355)
Q Consensus 206 ~~~~~~~-------~p~~~~~----~~~l~~~~~~-----~~~----~~~~a~~~~~~Al~~~~~--~~~~~~~~~~~~~ 263 (355)
+..++.+ ...+.+. +...|..|.- .|+ ..+.+...|++|+++.+. ...+|....+..+
T Consensus 94 C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN 173 (236)
T PF00244_consen 94 CNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEAYEEALEIAKKELPPTHPLRLGLALN 173 (236)
T ss_dssp HHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHHhhhhHHHHHhcccCCCCcHHHHHHHH
Confidence 3333322 1122222 1122333211 121 145678889999999888 2334444555666
Q ss_pred HHHHHH-HccCHHHHHHHHHHHHHh
Q 040440 264 IAQIKV-MESKHSEALRVYEELVKE 287 (355)
Q Consensus 264 la~~~~-~~g~~~~A~~~~~~~l~~ 287 (355)
.+.+|+ ..|+.++|++..++++..
T Consensus 174 ~svF~yei~~~~~~A~~ia~~afd~ 198 (236)
T PF00244_consen 174 YSVFYYEILNDPEKAIEIAKQAFDE 198 (236)
T ss_dssp HHHHHHHTSS-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHH
Confidence 666664 489999999999888753
|
There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A .... |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.46 E-value=25 Score=33.32 Aligned_cols=190 Identities=16% Similarity=0.021 Sum_probs=91.1
Q ss_pred ccccchhhhhhhhhhhccCCHHHHHHHHHHHHHc--------------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 040440 111 TVESTNESTKDTTSAREDVSYEEKEKEIEQHLAA--------------NPNDIEALQTLMEVRIKSQKLVEAVDVIDRLI 176 (355)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 176 (355)
.+.+.+..++.. +.+..+++-|.+.|.++-.. ...-+ --..++.++...|++.+|.+.|.+.=
T Consensus 583 Vv~~DW~~LA~~--ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P-~~iLlA~~~Ay~gKF~EAAklFk~~G 659 (1081)
T KOG1538|consen 583 VTDTDWRELAME--ALEALDFETARKAYIRVRDLRYLELISELEERKKRGETP-NDLLLADVFAYQGKFHEAAKLFKRSG 659 (1081)
T ss_pred eecchHHHHHHH--HHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCc-hHHHHHHHHHhhhhHHHHHHHHHHcC
Confidence 344555555543 45556777777777765321 11111 12345566666666666666665421
Q ss_pred ------HcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHH
Q 040440 177 ------ELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRK--DPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERC 248 (355)
Q Consensus 177 ------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~ 248 (355)
++..+ --.+.+++-+...|.-++-..+.++--+. +-+.+.+ -+..+...|+ ..+|+.++
T Consensus 660 ~enRAlEmyTD--lRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePka---AAEmLiSaGe--------~~KAi~i~ 726 (1081)
T KOG1538|consen 660 HENRALEMYTD--LRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEPKA---AAEMLISAGE--------HVKAIEIC 726 (1081)
T ss_pred chhhHHHHHHH--HHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcHH---HHHHhhcccc--------hhhhhhhh
Confidence 11110 01233344444444444433333332221 1122222 2444555555 66666654
Q ss_pred Hh-----------hccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHH
Q 040440 249 KK-----------EKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEK 317 (355)
Q Consensus 249 ~~-----------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 317 (355)
-. .+.+..+.+.+..++..+.....+.-|-++|.++-.. -.+..++...++|.+|...-++
T Consensus 727 ~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~--------ksiVqlHve~~~W~eAFalAe~ 798 (1081)
T KOG1538|consen 727 GDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL--------KSLVQLHVETQRWDEAFALAEK 798 (1081)
T ss_pred hcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccH--------HHHhhheeecccchHhHhhhhh
Confidence 33 1112222333444444445555555555555554211 2345566778889999887776
Q ss_pred HHHhCCC
Q 040440 318 FRRLVPR 324 (355)
Q Consensus 318 ~l~~~p~ 324 (355)
.-+..|+
T Consensus 799 hPe~~~d 805 (1081)
T KOG1538|consen 799 HPEFKDD 805 (1081)
T ss_pred Ccccccc
Confidence 6555443
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=85.25 E-value=13 Score=27.51 Aligned_cols=41 Identities=17% Similarity=0.103 Sum_probs=33.4
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccC
Q 040440 191 QVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSD 231 (355)
Q Consensus 191 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 231 (355)
..+...+.....+.+++.++..++.+......+..+|...+
T Consensus 15 ~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~~ 55 (140)
T smart00299 15 ELFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKYD 55 (140)
T ss_pred HHHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHHC
Confidence 44556688999999999999988888888888888887664
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=84.31 E-value=73 Score=35.32 Aligned_cols=65 Identities=20% Similarity=0.104 Sum_probs=58.1
Q ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 040440 147 NDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKD 213 (355)
Q Consensus 147 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 213 (355)
.-.+.|...|.+....|.++.|...+-++.+.. -+.++...|...+..|+-..|+..+++.++.+
T Consensus 1668 ~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1668 RLGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred hhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 347889999999999999999999999888765 56788999999999999999999999999764
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=84.30 E-value=3.4 Score=21.51 Aligned_cols=27 Identities=15% Similarity=0.146 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 040440 294 PYLCQGIIYTLLRKKDEAEKQFEKFRR 320 (355)
Q Consensus 294 ~~~~l~~~~~~~g~~~~A~~~~~~~l~ 320 (355)
.|..+..++.+.|+++.|..+|+...+
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~ 29 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKE 29 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 345555566666666666666655544
|
|
| >PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB) | Back alignment and domain information |
|---|
Probab=84.27 E-value=6.6 Score=34.83 Aligned_cols=109 Identities=13% Similarity=-0.026 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHH-HHHHHHHh
Q 040440 133 EKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAI-KGFEEILR 211 (355)
Q Consensus 133 ~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~-~~~~~~~~ 211 (355)
+|+-+++.++..+|.+......+..+|...|-...|...|..+--..-.....-+.+..-....|.+..+. ..++.+..
T Consensus 201 ~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~L~iK~IQ~DTL~h~~~~r~~~~~~~~~~~~~~~~~~~~ 280 (365)
T PF09797_consen 201 QAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYESLDIKNIQLDTLGHLILDRLSTLGPFKSAPENLLENALK 280 (365)
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHhcChHHHHHHHhHHHHHHHHhccCcccccchHHHHHHHH
Q ss_pred hCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHH
Q 040440 212 KDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCK 249 (355)
Q Consensus 212 ~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~ 249 (355)
....+..-.-.....-++.|. |.+..+..+
T Consensus 281 fy~~~~~~~~e~i~~af~~gs--------ysKi~ef~~ 310 (365)
T PF09797_consen 281 FYDNSEKETPEFIIKAFENGS--------YSKIEEFIE 310 (365)
T ss_pred HHHHHHHHHHHHHHHHHhCCC--------chhHHHHHH
|
The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 []. |
| >KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown] | Back alignment and domain information |
|---|
Probab=83.54 E-value=14 Score=28.92 Aligned_cols=102 Identities=15% Similarity=0.067 Sum_probs=70.5
Q ss_pred CCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHH-----HccCHHHHHHHHHHHHHhC
Q 040440 214 PLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKV-----MESKHSEALRVYEELVKEE 288 (355)
Q Consensus 214 p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~-----~~g~~~~A~~~~~~~l~~~ 288 (355)
...++.-+.|+. .++...+.|++|..+++..-.....+...+.+|..++ ..++...|++.++.+-.
T Consensus 31 EK~Pe~C~lLgd-------YlEgi~knF~~A~kv~K~nCden~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~-- 101 (248)
T KOG4014|consen 31 EKRPESCQLLGD-------YLEGIQKNFQAAVKVFKKNCDENSYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACD-- 101 (248)
T ss_pred cCCchHHHHHHH-------HHHHHHHHHHHHHHHHHhcccccCCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhc--
Confidence 345666655554 4555666799999999986655566666666666554 23578999999998865
Q ss_pred CCChHHHHHHHHHHHHc-----CC--HHHHHHHHHHHHHhCCC
Q 040440 289 PRDFRPYLCQGIIYTLL-----RK--KDEAEKQFEKFRRLVPR 324 (355)
Q Consensus 289 ~~~~~~~~~l~~~~~~~-----g~--~~~A~~~~~~~l~~~p~ 324 (355)
.+.+.+-..+|.++..- ++ .++|++++.++-.+.-.
T Consensus 102 ~n~~~aC~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl~~~ 144 (248)
T KOG4014|consen 102 ANIPQACRYLGLLHWNGEKDRKADPDSEKAERYMTRACDLEDG 144 (248)
T ss_pred cCCHHHHhhhhhhhccCcCCccCCCCcHHHHHHHHHhccCCCc
Confidence 34566666777766532 33 67999999999877543
|
|
| >COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=83.36 E-value=22 Score=33.11 Aligned_cols=26 Identities=19% Similarity=0.024 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHH
Q 040440 151 ALQTLMEVRIKSQKLVEAVDVIDRLI 176 (355)
Q Consensus 151 ~~~~la~~~~~~g~~~~A~~~~~~~~ 176 (355)
+-..+..+|+..|+|++|+++.-++-
T Consensus 61 aaL~~SKvYy~LgeY~~Ai~yAL~ag 86 (926)
T COG5116 61 AALCLSKVYYVLGEYQQAIEYALRAG 86 (926)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHhcC
Confidence 55667889999999999999876653
|
|
| >smart00101 14_3_3 14-3-3 homologues | Back alignment and domain information |
|---|
Probab=82.77 E-value=26 Score=29.01 Aligned_cols=167 Identities=13% Similarity=0.126 Sum_probs=88.4
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHc-CC--CchHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Q 040440 152 LQTLMEVRIKSQKLVEAVDVIDRLIEL-EP--NEFEWQLLKAQVQS-YAGESEAAIKGFEEILRKD-PLRVEAYHGLVMA 226 (355)
Q Consensus 152 ~~~la~~~~~~g~~~~A~~~~~~~~~~-~~--~~~~~~~~la~~~~-~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~ 226 (355)
+..++.+.-+.|+|++.+.+..++++. ++ -+.+-...+..+|- ..|....+...+...-... .....-...+..-
T Consensus 4 ~v~~Aklaeq~eRyddm~~~mk~~~~~~~~~eLt~EERnLLSvayKn~i~~~R~s~R~i~sie~ke~~~~~~~~~~~~~~ 83 (244)
T smart00101 4 NVYMAKLAEQAERYEEMVEFMEKVAKTVDSEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNEDHVASIKE 83 (244)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhhcCCccCCHHHHHHHHHHHhhhhcccHHHHHHHhHHHHhhhccCchHHHHHHHH
Confidence 345677778889999999999988876 43 23344455555443 3466777777766533321 1111111122222
Q ss_pred HhccCchHHHHHHHHHHHHHHHHh--hccC--CchHH-HHHHHHHHHHHc-----cC-----HHHHHHHHHHHHHh----
Q 040440 227 YDGSDKKLNEVEKRIEKAMERCKK--EKKK--SDLRD-FKLLIAQIKVME-----SK-----HSEALRVYEELVKE---- 287 (355)
Q Consensus 227 ~~~~~~~~~~a~~~~~~Al~~~~~--~~~~--~~~~~-~~~~la~~~~~~-----g~-----~~~A~~~~~~~l~~---- 287 (355)
|.. +-.++......+.+.+++. .... +.... ++-..|+.|... |+ .++|.+.|+++++.
T Consensus 84 yr~--kie~EL~~iC~eil~lid~~Lip~~~~~eskVFy~KmKGDYyRYlaE~~~~~e~~~~~~~a~~aY~~A~e~a~~~ 161 (244)
T smart00101 84 YRG--KIETELSKICDGILKLLESHLIPSASAAESKVFYLKMKGDYHRYLAEFKTGAERKEAAENTLVAYKSAQDIALAE 161 (244)
T ss_pred HHH--HHHHHHHHHHHHHHHHHHHhCccccCcHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 221 1123344456666777666 1111 11111 122334444322 22 45888999988764
Q ss_pred -CCCChH---HHHHHHHH-HHHcCCHHHHHHHHHHHHH
Q 040440 288 -EPRDFR---PYLCQGII-YTLLRKKDEAEKQFEKFRR 320 (355)
Q Consensus 288 -~~~~~~---~~~~l~~~-~~~~g~~~~A~~~~~~~l~ 320 (355)
.|.++. ...+.+.. |..+++.++|...-++++.
T Consensus 162 L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd 199 (244)
T smart00101 162 LPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFD 199 (244)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 354442 23333333 4457999998877776654
|
14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases. |
| >KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=82.02 E-value=51 Score=31.87 Aligned_cols=42 Identities=17% Similarity=0.026 Sum_probs=29.0
Q ss_pred HHHHHHHHHHc--CCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 040440 134 KEKEIEQHLAA--NPNDIEALQTLMEVRIKSQKLVEAVDVIDRL 175 (355)
Q Consensus 134 A~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 175 (355)
.+...+...+. .|+...+-.....+|+..|+|++|+++.-++
T Consensus 42 ~l~~IE~lyed~~F~er~~AaL~~SKVyy~Lgeye~Al~yAL~a 85 (929)
T KOG2062|consen 42 SLPKIESLYEDETFPERQLAALLASKVYYYLGEYEDALEYALRA 85 (929)
T ss_pred hHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 34445544442 2334455567788999999999999998776
|
|
| >PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex [] | Back alignment and domain information |
|---|
Probab=82.01 E-value=40 Score=30.60 Aligned_cols=32 Identities=13% Similarity=0.061 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcCCCc
Q 040440 151 ALQTLMEVRIKSQKLVEAVDVIDRLIELEPNE 182 (355)
Q Consensus 151 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~ 182 (355)
....+|+.++..|||+-|...|+-+.+...++
T Consensus 210 q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~D 241 (414)
T PF12739_consen 210 QMRRLADLAFMLRDYELAYSTYRLLKKDFKND 241 (414)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHHHhhc
Confidence 35679999999999999999999887654433
|
Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ]. |
| >cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules | Back alignment and domain information |
|---|
Probab=81.75 E-value=3.7 Score=26.77 Aligned_cols=17 Identities=18% Similarity=0.331 Sum_probs=10.1
Q ss_pred HccCHHHHHHHHHHHHH
Q 040440 161 KSQKLVEAVDVIDRLIE 177 (355)
Q Consensus 161 ~~g~~~~A~~~~~~~~~ 177 (355)
..|+|++|+.+|..+++
T Consensus 18 ~~gny~eA~~lY~~ale 34 (75)
T cd02680 18 EKGNAEEAIELYTEAVE 34 (75)
T ss_pred HhhhHHHHHHHHHHHHH
Confidence 34566666666666554
|
This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear. |
| >KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown] | Back alignment and domain information |
|---|
Probab=81.43 E-value=24 Score=27.66 Aligned_cols=53 Identities=15% Similarity=0.172 Sum_probs=31.7
Q ss_pred HHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc----CCHHHHHHHHHHHHHh
Q 040440 267 IKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLL----RKKDEAEKQFEKFRRL 321 (355)
Q Consensus 267 ~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~l~~ 321 (355)
.+....+.++|.++--++-++ +++++-.++...|..- .+-++|..+-.++.++
T Consensus 177 ~~~~~kDMdka~qfa~kACel--~~~~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e~ 233 (248)
T KOG4014|consen 177 LGSLSKDMDKALQFAIKACEL--DIPQACANVSRMYKLGDGVPKDEDQAEKYKDRAKEI 233 (248)
T ss_pred hhhhhHhHHHHHHHHHHHHhc--CChHHHhhHHHHHHccCCCCccHHHHHHHHHHHHHH
Confidence 344456777888877777665 3455555666665432 2456666666666554
|
|
| >COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription] | Back alignment and domain information |
|---|
Probab=81.28 E-value=35 Score=29.54 Aligned_cols=183 Identities=11% Similarity=0.017 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 040440 132 EEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILR 211 (355)
Q Consensus 132 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 211 (355)
++|+.+-+-.....|..++++-.++.+.++..+...=...=-..+-+...+.. .+.-+-.+++...+.++..
T Consensus 213 ~EairLgRll~~L~p~EPE~~GL~ALmll~~sR~~AR~~~~G~~vlL~dQDr~--------lW~r~lI~eg~all~rA~~ 284 (415)
T COG4941 213 DEAIRLGRLLARLLPGEPEALGLLALMLLQESRRPARFDADGEPVLLEDQDRS--------LWDRALIDEGLALLDRALA 284 (415)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhhhccCCCCCeeeccccchh--------hhhHHHHHHHHHHHHHHHH
Confidence 66787777778888999988887777765432211000000000001111111 1222234455666666665
Q ss_pred hCC-CCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--C
Q 040440 212 KDP-LRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKE--E 288 (355)
Q Consensus 212 ~~p-~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~--~ 288 (355)
... ......-.++.++...... ....+..-..+|.-+.....++.+-.+.+....+..-.+.++...+-+... -
T Consensus 285 ~~~pGPYqlqAAIaa~HA~a~~a---edtDW~~I~aLYdaL~~~apSPvV~LNRAVAla~~~Gp~agLa~ve~L~~~~~L 361 (415)
T COG4941 285 SRRPGPYQLQAAIAALHARARRA---EDTDWPAIDALYDALEQAAPSPVVTLNRAVALAMREGPAAGLAMVEALLARPRL 361 (415)
T ss_pred cCCCChHHHHHHHHHHHHhhccc---CCCChHHHHHHHHHHHHhCCCCeEeehHHHHHHHhhhHHhHHHHHHHhhccccc
Confidence 432 2222222222222211100 000022222222222222233334444454555555566666666665543 1
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 040440 289 PRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRN 325 (355)
Q Consensus 289 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~ 325 (355)
......+-..|..+.++|+.++|...|++++.+.++.
T Consensus 362 ~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~ 398 (415)
T COG4941 362 DGYHLYHAARADLLARLGRVEEARAAYDRAIALARNA 398 (415)
T ss_pred ccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCCh
Confidence 2344556677888888888888888888888887754
|
|
| >smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1 | Back alignment and domain information |
|---|
Probab=81.22 E-value=19 Score=26.30 Aligned_cols=75 Identities=11% Similarity=0.082 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHhh---ccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC--CChHHHHHHHHHHHHcCCHHHH
Q 040440 237 VEKRIEKAMERCKKE---KKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEP--RDFRPYLCQGIIYTLLRKKDEA 311 (355)
Q Consensus 237 a~~~~~~Al~~~~~~---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~--~~~~~~~~l~~~~~~~g~~~~A 311 (355)
....+++++..+... .+++....+|..++... ++..++|..+....- .....|...|..+...|++.+|
T Consensus 45 L~~lLerc~~~f~~~~~YknD~RyLkiWi~ya~~~------~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A 118 (125)
T smart00777 45 LLTLLERCIRYFEDDERYKNDPRYLKIWLKYADNC------DEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKA 118 (125)
T ss_pred HHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhc------CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHH
Confidence 344466666666553 23333334444444331 335556666655432 3455666777778888888888
Q ss_pred HHHHHH
Q 040440 312 EKQFEK 317 (355)
Q Consensus 312 ~~~~~~ 317 (355)
.++|+.
T Consensus 119 ~~iy~~ 124 (125)
T smart00777 119 DEVYQL 124 (125)
T ss_pred HHHHHc
Confidence 877763
|
Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p. |
| >PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease [] | Back alignment and domain information |
|---|
Probab=81.16 E-value=19 Score=29.89 Aligned_cols=65 Identities=15% Similarity=0.055 Sum_probs=34.3
Q ss_pred HHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 040440 220 YHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELV 285 (355)
Q Consensus 220 ~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 285 (355)
...+|..|...|+ ++.|...++.+...+.+..=..-...+...+..|+...|+.+..+.+.-+++
T Consensus 181 ~~~~A~ey~~~g~-~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 181 SLEMAEEYFRLGD-YDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHHHCCC-HHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 3455666666666 3333333333333332211122234456666777888888887777665543
|
Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats. |
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=80.49 E-value=46 Score=32.29 Aligned_cols=26 Identities=23% Similarity=0.413 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHH
Q 040440 259 DFKLLIAQIKVMESKHSEALRVYEEL 284 (355)
Q Consensus 259 ~~~~~la~~~~~~g~~~~A~~~~~~~ 284 (355)
.+.-.|+..|...++|++|+..|-++
T Consensus 506 ~L~e~La~LYl~d~~Y~~Al~~ylkl 531 (846)
T KOG2066|consen 506 ALLEVLAHLYLYDNKYEKALPIYLKL 531 (846)
T ss_pred hHHHHHHHHHHHccChHHHHHHHHhc
Confidence 34444666666666666666666554
|
|
| >KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=80.26 E-value=43 Score=29.86 Aligned_cols=97 Identities=15% Similarity=0.163 Sum_probs=60.7
Q ss_pred HHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC--------
Q 040440 218 EAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEP-------- 289 (355)
Q Consensus 218 ~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~-------- 289 (355)
.++..++..|...|+ ++.|.+.|.++.+++.. .......+.++..+-+..|+|..-..+..++.....
T Consensus 151 ra~~Dl~dhy~~cG~-l~~Alr~YsR~RdYCTs---~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~ 226 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQ-LDNALRCYSRARDYCTS---AKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQE 226 (466)
T ss_pred HHHHHHHHHHHHhcc-HHHHHhhhhhhhhhhcc---hHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHh
Confidence 346677777888887 55555555555444433 233455666777777778888877777777665410
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 040440 290 RDFRPYLCQGIIYTLLRKKDEAEKQFEKF 318 (355)
Q Consensus 290 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 318 (355)
-...+...-|.+....++|..|..+|-.+
T Consensus 227 v~~kl~C~agLa~L~lkkyk~aa~~fL~~ 255 (466)
T KOG0686|consen 227 VPAKLKCAAGLANLLLKKYKSAAKYFLLA 255 (466)
T ss_pred cCcchHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 12334556666677777888888877654
|
|
| >KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=80.08 E-value=43 Score=29.82 Aligned_cols=98 Identities=10% Similarity=-0.014 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC---CCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHH----HhhccCCch
Q 040440 185 WQLLKAQVQSYAGESEAAIKGFEEILRKDP---LRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERC----KKEKKKSDL 257 (355)
Q Consensus 185 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~p---~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~----~~~~~~~~~ 257 (355)
++..+|..|...|+++.|++.|-++-..-- .....+.++..+-...|+ |.....+..+|.... ......+.
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~n-w~hv~sy~~~A~st~~~~~~~~q~v~~- 229 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGN-WGHVLSYISKAESTPDANENLAQEVPA- 229 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcc-hhhhhhHHHHHHhCchhhhhHHHhcCc-
Confidence 455667777777777777777777443321 123344555555555555 444444455554442 11111222
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 040440 258 RDFKLLIAQIKVMESKHSEALRVYEELV 285 (355)
Q Consensus 258 ~~~~~~la~~~~~~g~~~~A~~~~~~~l 285 (355)
.+...-|......++|..|.++|-.+.
T Consensus 230 -kl~C~agLa~L~lkkyk~aa~~fL~~~ 256 (466)
T KOG0686|consen 230 -KLKCAAGLANLLLKKYKSAAKYFLLAE 256 (466)
T ss_pred -chHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 233344445555567777777775543
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 78.6 bits (194), Expect = 3e-16
Identities = 35/210 (16%), Positives = 77/210 (36%), Gaps = 9/210 (4%)
Query: 131 YEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKA 190
Y +++ L D E + E IK + +A+ + +L+ + E +
Sbjct: 159 YTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKIS 218
Query: 191 QVQSYAGESEAAIKGFEEILRKDPLRVEAY--HGLVMAYDGSDKKLNEVEK--RIEKAME 246
+ G+ E ++ E L+ D + + V + + E+ + R A
Sbjct: 219 TLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATS 278
Query: 247 RCKK-EKKKSDLRDFKLLI----AQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGII 301
+ + K + + ++ + + K EA+RV E+++ EP + +
Sbjct: 279 KYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEA 338
Query: 302 YTLLRKKDEAEKQFEKFRRLVPRNHPYREY 331
Y + DEA + +E + + RE
Sbjct: 339 YLIEEMYDEAIQDYETAQEHNENDQQIREG 368
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 67.4 bits (165), Expect = 1e-12
Identities = 34/212 (16%), Positives = 79/212 (37%), Gaps = 26/212 (12%)
Query: 131 YEEKEKEIEQHLAANPNDIEALQTLMEVR---------------IKSQKLVEAVDVIDRL 175
+E E + ++ L +NP++ E + ++ S A+ +D++
Sbjct: 110 LDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKI 169
Query: 176 IELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLN 235
+E+ + E + L+A+ GE AI + + EA++ + Y
Sbjct: 170 LEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLG-DHE 228
Query: 236 EVEKRIEKAME------RCKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEP 289
+ + ++ RC K+ + + A+ + + ++++A YE ++K EP
Sbjct: 229 LSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEP 288
Query: 290 RD----FRPYLCQGIIYTLLRKKDEAEKQFEK 317
R ++ K EA + +
Sbjct: 289 SIAEYTVRSKERICHCFSKDEKPVEAIRVCSE 320
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 67.4 bits (165), Expect = 2e-12
Identities = 25/215 (11%), Positives = 75/215 (34%), Gaps = 18/215 (8%)
Query: 131 YEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKA 190
+ + + +P++ A V + K A+ + ++I+L+ + +L +
Sbjct: 42 LADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRG 101
Query: 191 QVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK 250
+ G+ + A F+++L+ +P E K +E+++ +A+
Sbjct: 102 HLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQ-----SQLIKSDEMQRLRSQALNAFGS 156
Query: 251 EK-------------KKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLC 297
+ + L A+ + E + +A+ + K + + +
Sbjct: 157 GDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYK 216
Query: 298 QGIIYTLLRKKDEAEKQFEKFRRLVPRNHPYREYF 332
+Y L + + + + +L + ++
Sbjct: 217 ISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHY 251
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 56.2 bits (136), Expect = 6e-09
Identities = 28/197 (14%), Positives = 69/197 (35%), Gaps = 10/197 (5%)
Query: 139 EQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGE 198
E + D+E L + + + +L +A+ ++ +P+ + +A V G+
Sbjct: 16 ENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGK 75
Query: 199 SEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAME---------RCK 249
S+AA+ ++++ A KL+E E +K ++ +
Sbjct: 76 SKAALPDLTKVIQLKMDFTAARLQRGHLLLKQ-GKLDEAEDDFKKVLKSNPSENEEKEAQ 134
Query: 250 KEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKD 309
+ KSD A ++ A+ +++++ D + + +
Sbjct: 135 SQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPR 194
Query: 310 EAEKQFEKFRRLVPRNH 326
+A + +L N
Sbjct: 195 KAISDLKAASKLKNDNT 211
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 45.8 bits (109), Expect = 1e-05
Identities = 31/186 (16%), Positives = 65/186 (34%), Gaps = 29/186 (15%)
Query: 131 YEEKEKEIEQHLAANPNDIEALQTLMEVR----IKSQKLVEAVDVIDRLIELEPNEFEWQ 186
Y + + E + P+ E E K +K VEA+ V ++++EP+
Sbjct: 273 YTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNAL 332
Query: 187 LLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAME 246
+A+ + AI+ +E + + GL E
Sbjct: 333 KDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGL----------------------E 370
Query: 247 RCKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKE-EPRDFRPYLCQGIIYTLL 305
+ ++ K+S RD+ ++ + +K E ++ Y +L + P +F+ +
Sbjct: 371 KAQRLLKQSQKRDYYKILGVKR--NAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKF 428
Query: 306 RKKDEA 311
A
Sbjct: 429 IDIAAA 434
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 75.8 bits (187), Expect = 2e-15
Identities = 34/209 (16%), Positives = 77/209 (36%), Gaps = 9/209 (4%)
Query: 131 YEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKA 190
Y +++ L D E + E IK + +A+ + +L+ + E +
Sbjct: 136 YTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKIS 195
Query: 191 QVQSYAGESEAAIKGFEEILRKDPLRVEAY--HGLVMAYDGSDKKLNEVEK--RIEKAME 246
+ G+ E ++ E L+ D + + V + + E+ + R A
Sbjct: 196 TLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATS 255
Query: 247 RCKKE-KKKSDLRDFKLLI----AQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGII 301
+ + K + + ++ + + K EA+R+ E+++ EP + +
Sbjct: 256 KYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEA 315
Query: 302 YTLLRKKDEAEKQFEKFRRLVPRNHPYRE 330
Y + DEA + +E + + RE
Sbjct: 316 YLIEEMYDEAIQDYEAAQEHNENDQQIRE 344
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 67.7 bits (166), Expect = 8e-13
Identities = 35/215 (16%), Positives = 82/215 (38%), Gaps = 32/215 (14%)
Query: 131 YEEKEKEIEQHLAANPNDIEALQTLMEVR---------------IKSQKLVEAVDVIDRL 175
+E E + ++ L +NP++ E + ++ A+ +D++
Sbjct: 87 LDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKI 146
Query: 176 IELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLN 235
+E+ + E + L+A+ GE AI + + EA++ + Y +L
Sbjct: 147 LEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLY----YQLG 202
Query: 236 EVEKRIE---KAME------RCKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVK 286
+ E + + ++ RC K+ + + A+ + + ++++A YE ++K
Sbjct: 203 DHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMK 262
Query: 287 EEPRD----FRPYLCQGIIYTLLRKKDEAEKQFEK 317
EP R ++ K EA + +
Sbjct: 263 TEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSE 297
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 56.5 bits (137), Expect = 4e-09
Identities = 23/191 (12%), Positives = 67/191 (35%), Gaps = 16/191 (8%)
Query: 148 DIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFE 207
D+E L + + + +L +A+ ++ +P+ + +A V G+S+AA+
Sbjct: 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLT 61
Query: 208 EILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIE---KAMERC---------KKEKKKS 255
+++ A K ++++ + K ++ + + K+
Sbjct: 62 KVIALKMDFTAARLQRGHLL----LKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKA 117
Query: 256 DLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQF 315
D A + ++ A+ +++++ D + + + +A
Sbjct: 118 DEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDL 177
Query: 316 EKFRRLVPRNH 326
+ +L N
Sbjct: 178 KAASKLKSDNT 188
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 53.8 bits (130), Expect = 3e-08
Identities = 24/212 (11%), Positives = 56/212 (26%), Gaps = 56/212 (26%)
Query: 131 YEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPN--------- 181
+ ++ + +A + A + +K KL EA D ++++ P+
Sbjct: 53 SKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAES 112
Query: 182 ------EFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLN 235
E + +A + AAI ++IL E + K
Sbjct: 113 QLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECF----IKEG 168
Query: 236 EVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPY 295
E +A+ + K + + +
Sbjct: 169 EPR-------------------------------------KAISDLKAASKLKSDNTEAF 191
Query: 296 LCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHP 327
+Y L + + + + +L +
Sbjct: 192 YKISTLYYQLGDHELSLSEVRECLKLDQDHKR 223
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 46.9 bits (112), Expect = 5e-06
Identities = 22/194 (11%), Positives = 66/194 (34%), Gaps = 25/194 (12%)
Query: 131 YEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPN--------- 181
+ +++ ++ EA + + + ++ + ++L+ +
Sbjct: 170 PRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYK 229
Query: 182 ---EFEWQLLKAQVQSYAGESEAAIKGFEEILRKDP----LRVEAYHGLVMAYDGSDKKL 234
+ + A+ G A +E +++ +P V + + + K
Sbjct: 230 QVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCF----SKD 285
Query: 235 NEVEKRIEKAMERCKKE-KKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFR 293
+ +A+ C + + + D + A+ ++E + EA++ YE + D +
Sbjct: 286 E----KPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQ 341
Query: 294 PYLCQGIIYTLLRK 307
LL++
Sbjct: 342 IREGLEKAQRLLKQ 355
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 43.8 bits (104), Expect = 5e-05
Identities = 22/114 (19%), Positives = 44/114 (38%), Gaps = 8/114 (7%)
Query: 131 YEEKEKEIEQHLAANPNDIEALQTLME----VRIKSQKLVEAVDVIDRLIELEPNEFEWQ 186
Y + + E + P+ E E K +K VEA+ + ++++EP+
Sbjct: 250 YTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNAL 309
Query: 187 LLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKR 240
+A+ + AI+ +E + + GL A + L + +KR
Sbjct: 310 KDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQ----RLLKQSQKR 359
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 71.4 bits (176), Expect = 5e-14
Identities = 33/188 (17%), Positives = 65/188 (34%), Gaps = 9/188 (4%)
Query: 131 YEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKA 190
+E E+ Q P++ L L + + ++L + I+ P E
Sbjct: 15 FEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLG 74
Query: 191 QVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK 250
V G+ + AI+ + LR P ++ Y L A +E A++
Sbjct: 75 NVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAAL----VAAG----DMEGAVQAYVS 126
Query: 251 E-KKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKD 309
+ DL + + + + EA Y + ++ +P + G ++ +
Sbjct: 127 ALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIW 186
Query: 310 EAEKQFEK 317
A FEK
Sbjct: 187 LAIHHFEK 194
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 64.1 bits (157), Expect = 1e-11
Identities = 38/196 (19%), Positives = 69/196 (35%), Gaps = 9/196 (4%)
Query: 131 YEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKA 190
E+ + +PN ++A L V +++ AV R + L PN A
Sbjct: 185 IWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLA 244
Query: 191 QVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK 250
V G + AI + + P +AY L A K+ + +A +
Sbjct: 245 CVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANAL----KEKG----SVAEAEDCYNT 296
Query: 251 E-KKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKD 309
+ D +A IK + EA+R+Y + ++ P + + K
Sbjct: 297 ALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQ 356
Query: 310 EAEKQFEKFRRLVPRN 325
EA +++ R+ P
Sbjct: 357 EALMHYKEAIRISPTF 372
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 61.8 bits (151), Expect = 8e-11
Identities = 34/188 (18%), Positives = 60/188 (31%), Gaps = 9/188 (4%)
Query: 131 YEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKA 190
E + L NP+ L + +L EA + IE +PN
Sbjct: 117 MEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLG 176
Query: 191 QVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK 250
V + GE AI FE+ + DP ++AY L K+ + ++A+ +
Sbjct: 177 CVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVL----KEA----RIFDRAVAAYLR 228
Query: 251 E-KKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKD 309
+ +A + + A+ Y ++ +P Y
Sbjct: 229 ALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVA 288
Query: 310 EAEKQFEK 317
EAE +
Sbjct: 289 EAEDCYNT 296
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 58.3 bits (142), Expect = 1e-09
Identities = 29/157 (18%), Positives = 56/157 (35%), Gaps = 7/157 (4%)
Query: 161 KSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAY 220
++ A +L EP+ LL + + + + ++++PL EAY
Sbjct: 11 QAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAY 70
Query: 221 HGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSEALRV 280
L Y +L E + A+ K D D + +A V A++
Sbjct: 71 SNLGNVYKER-GQLQEAIEHYRHALRL------KPDFIDGYINLAAALVAAGDMEGAVQA 123
Query: 281 YEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEK 317
Y ++ P + G + L + +EA+ + K
Sbjct: 124 YVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLK 160
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 56.4 bits (137), Expect = 4e-09
Identities = 30/188 (15%), Positives = 62/188 (32%), Gaps = 9/188 (4%)
Query: 131 YEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKA 190
EE + + + PN A L V ++ A+ ++ + L+PN + +
Sbjct: 151 LEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLG 210
Query: 191 QVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK 250
V A + A+ + L P + L Y + I+ A++ ++
Sbjct: 211 NVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVY----YEQG----LIDLAIDTYRR 262
Query: 251 E-KKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKD 309
+ + D +A + +EA Y ++ P I +
Sbjct: 263 AIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIE 322
Query: 310 EAEKQFEK 317
EA + + K
Sbjct: 323 EAVRLYRK 330
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 51.4 bits (124), Expect = 2e-07
Identities = 18/131 (13%), Positives = 45/131 (34%), Gaps = 7/131 (5%)
Query: 196 AGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKS 255
AG+ EAA + ++ R++P L + ++L+ A++ +
Sbjct: 12 AGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQC-RRLDRSAHFSTLAIK------QNP 64
Query: 256 DLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQF 315
L + + + + EA+ Y ++ +P Y+ + A + +
Sbjct: 65 LLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAY 124
Query: 316 EKFRRLVPRNH 326
+ P +
Sbjct: 125 VSALQYNPDLY 135
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 46.0 bits (110), Expect = 1e-05
Identities = 20/97 (20%), Positives = 38/97 (39%)
Query: 131 YEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKA 190
E E L P ++L L ++ + + EAV + + +E+ P A
Sbjct: 287 VAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLA 346
Query: 191 QVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAY 227
V G+ + A+ ++E +R P +AY +
Sbjct: 347 SVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTL 383
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 68.1 bits (167), Expect = 4e-13
Identities = 25/195 (12%), Positives = 61/195 (31%), Gaps = 6/195 (3%)
Query: 132 EEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQ 191
+ E I + + +++ + +L E + + ++E +P +
Sbjct: 5 KPSETVIPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIG 64
Query: 192 VQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKE 251
++ +++ P ++ + Y K + + KA
Sbjct: 65 TLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTL---- 120
Query: 252 KKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEA 311
+ + +ES+H +A+ Y + P L G+ Y L A
Sbjct: 121 --EKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLA 178
Query: 312 EKQFEKFRRLVPRNH 326
E+ F + + P +
Sbjct: 179 ERFFSQALSIAPEDP 193
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 58.8 bits (143), Expect = 5e-10
Identities = 27/189 (14%), Positives = 57/189 (30%), Gaps = 10/189 (5%)
Query: 131 YEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKA 190
++ K + +P L + ++ K E + +L++L P+
Sbjct: 38 FKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVG 97
Query: 191 QVQSYAGE-SEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCK 249
G +E A + + + A+ ++ VE ++AM
Sbjct: 98 CYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSF--------AVESEHDQAMAAYF 149
Query: 250 K-EKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKK 308
+ L I + + A R + + + P D G++ +
Sbjct: 150 TAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEW 209
Query: 309 DEAEKQFEK 317
AEK F
Sbjct: 210 KTAEKWFLD 218
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 55.0 bits (133), Expect = 1e-08
Identities = 28/190 (14%), Positives = 61/190 (32%), Gaps = 4/190 (2%)
Query: 131 YEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKA 190
E + + + A + +A+ +L L
Sbjct: 107 NEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIG 166
Query: 191 QVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK 250
S+ A + F + L P H + + + + EK A+E+ K
Sbjct: 167 LEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAF-QNGEWKTAEKWFLDALEKIKA 225
Query: 251 EKKKSDLRDFKLL---IAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRK 307
+ + ++ L + + K++EAL + + + P++ Y G I++L+
Sbjct: 226 IGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGN 285
Query: 308 KDEAEKQFEK 317
+ A F
Sbjct: 286 FENAVDYFHT 295
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 68.2 bits (167), Expect = 7e-13
Identities = 31/199 (15%), Positives = 69/199 (34%), Gaps = 10/199 (5%)
Query: 131 YEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKA 190
+EE+ + + +L+ + + A + I + IEL P + + A
Sbjct: 219 FEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRVNSY-IYMA 277
Query: 191 QVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK 250
+ + +S F++ L+ D Y+ L + ++A + K
Sbjct: 278 LIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMN----FIL----QNYDQAGKDFDK 329
Query: 251 EKK-KSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKD 309
K+ + + +A + E+K + ++ E ++ P I T D
Sbjct: 330 AKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFD 389
Query: 310 EAEKQFEKFRRLVPRNHPY 328
+A KQ++ L +
Sbjct: 390 KALKQYDLAIELENKLDGI 408
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 67.8 bits (166), Expect = 1e-12
Identities = 34/191 (17%), Positives = 64/191 (33%), Gaps = 6/191 (3%)
Query: 131 YEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKA 190
E ++ L + N+ ++ Q +A D+ EL+P + A
Sbjct: 286 STEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLA 345
Query: 191 QVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK 250
+ + + F E RK P E + ++ K+ + A+E K
Sbjct: 346 CLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDK-NDFDKALKQYDLAIELENK 404
Query: 251 EKK----KSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLR 306
+ L L+ + +E EA + E+ K +PR + + +
Sbjct: 405 LDGIYVGIAPLVGKATLLTRNPTVE-NFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQE 463
Query: 307 KKDEAEKQFEK 317
DEA FE+
Sbjct: 464 DIDEAITLFEE 474
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 62.5 bits (152), Expect = 7e-11
Identities = 26/202 (12%), Positives = 67/202 (33%), Gaps = 15/202 (7%)
Query: 130 SYEEKEKEIEQHLAANPNDIEALQTLMEVRIKS-----QKLVEAVDVIDRLIELEPNEFE 184
+Y+E + ++ + N + + +S + E +D + +L+
Sbjct: 179 NYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAI 238
Query: 185 WQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKA 244
+ + A + ++ + P RV +Y + + +
Sbjct: 239 SLEHTGIFKFLKNDPLGAHEDIKKAIELFP-RVNSYIYMALIM----ADR----NDSTEY 289
Query: 245 MERCKK-EKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYT 303
K K S+ Q+ + + +A + +++ + +P + PY+ +
Sbjct: 290 YNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAY 349
Query: 304 LLRKKDEAEKQFEKFRRLVPRN 325
K D+ E F + +R P
Sbjct: 350 RENKFDDCETLFSEAKRKFPEA 371
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 6e-06
Identities = 24/219 (10%), Positives = 55/219 (25%), Gaps = 21/219 (9%)
Query: 131 YEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRL-IELEPNEFEWQLLK 189
++ + + L P+ + L K +A+ + L + + N+ + +
Sbjct: 55 LKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPML 114
Query: 190 AQVQSYA--GESEAAIKGFEEILRKDPLRVEAYH-------------GLVMAYDGS---D 231
+ + + + + + ++ G +
Sbjct: 115 ERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPE 174
Query: 232 KKLNEVEKRIEKAME--RCKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEP 289
++ E E K + E L E K +
Sbjct: 175 LTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKE 234
Query: 290 RDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHPY 328
+ GI L A + +K L PR + Y
Sbjct: 235 KLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRVNSY 273
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 42.0 bits (99), Expect = 2e-04
Identities = 19/121 (15%), Positives = 47/121 (38%), Gaps = 15/121 (12%)
Query: 131 YEEKEKEIEQHLAANPNDIEAL---------QTLMEVRIKSQKLVEAVDVIDRLIELEPN 181
+++ K+ + + TL+ + +EA +++++ +L+P
Sbjct: 388 FDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPR 447
Query: 182 EFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRI 241
+ ++ AQ++ + + AI FEE E + A + +V++RI
Sbjct: 448 SEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAITFA------EAAKVQQRI 501
Query: 242 E 242
Sbjct: 502 R 502
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 40.1 bits (94), Expect = 8e-04
Identities = 19/186 (10%), Positives = 45/186 (24%), Gaps = 5/186 (2%)
Query: 145 NPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIK 204
AL+ +++K +A+ + +EL+ + + + G+ + ++
Sbjct: 2 KDKYALALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSN-LSACYVSVGDLKKVVE 60
Query: 205 GFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLI 264
+ L P + A + L + + + L
Sbjct: 61 MSTKALELKPDYSKVLLRRASAN----EGLGKFADAMFDLSVLSLNGDFNDASIEPMLER 116
Query: 265 AQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPR 324
K SK E + + + F +
Sbjct: 117 NLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELT 176
Query: 325 NHPYRE 330
Y E
Sbjct: 177 FANYDE 182
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 66.1 bits (161), Expect = 4e-12
Identities = 35/207 (16%), Positives = 71/207 (34%), Gaps = 21/207 (10%)
Query: 131 YEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLV---EAVDVIDRLIELEPNEFEWQL 187
E + E+ L P + E L + A+D + + I L P+ ++
Sbjct: 154 NERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKV 213
Query: 188 LKA----QVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEK 243
L A +++ E K EE L K P + Y + ++ + ++K
Sbjct: 214 LLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYR-RKDEPDKAIELLKK 272
Query: 244 AME-------------RCKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPR 290
A+E C + K + + + + + A+ ++ +
Sbjct: 273 ALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDN 332
Query: 291 DFRPYLCQGIIYTLLRKKDEAEKQFEK 317
FR ++ L + +EAE F+K
Sbjct: 333 LFRVCSILASLHALADQYEEAEYYFQK 359
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 55.3 bits (133), Expect = 1e-08
Identities = 36/213 (16%), Positives = 78/213 (36%), Gaps = 22/213 (10%)
Query: 130 SYEEKEKEIEQHLA--ANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPN------ 181
+ E+ I+Q A A + V +L + +D++ +
Sbjct: 73 CLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYR 132
Query: 182 ----EFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEV 237
E + + +++ ++E A FE+ L K P E GL +A D
Sbjct: 133 IESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNW---- 188
Query: 238 EKRIEKAMERCKK-EKKKSDLRDFKLLIA----QIKVMESKHSEALRVYEELVKEEPRDF 292
+ A++ ++ + D + K+L+A +++ + E ++ EE +++ P
Sbjct: 189 -PPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVT 247
Query: 293 RPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRN 325
Y + D+A + +K +P N
Sbjct: 248 DVLRSAAKFYRRKDEPDKAIELLKKALEYIPNN 280
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 48.0 bits (114), Expect = 2e-06
Identities = 26/207 (12%), Positives = 65/207 (31%), Gaps = 34/207 (16%)
Query: 131 YEEKEKEIEQHLAANPNDIEALQTLMEV-------------------RIKSQKLVEAVDV 171
++ + +++ L PN+ + R + + AV
Sbjct: 263 PDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAH 322
Query: 172 IDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSD 231
+ + E N F + A + + A + E A F++ K+ V +
Sbjct: 323 LKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQL----LHLRYG 378
Query: 232 KKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPR 290
K +KA+ + K R+ + + +++ ++ + + +
Sbjct: 379 NFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQ----------KIAKMRLSKNGA 428
Query: 291 DFRPYLCQGIIYTLLRKKDEAEKQFEK 317
D + L K +A++ E+
Sbjct: 429 DSEALHVLAFLQELNEKMQQADEDSER 455
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 65.2 bits (159), Expect = 9e-12
Identities = 22/205 (10%), Positives = 58/205 (28%), Gaps = 9/205 (4%)
Query: 131 YEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKA 190
+ + + L +P +++ + +S + + + + L++ P + L
Sbjct: 321 FIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVG 380
Query: 191 QVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK 250
+ A + F + DP A+ G ++ +E ++A+
Sbjct: 381 IYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSF--------AIEGEHDQAISAYTT 432
Query: 251 -EKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKD 309
+ L + + A + D G++
Sbjct: 433 AARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQ 492
Query: 310 EAEKQFEKFRRLVPRNHPYREYFVD 334
A F+ LV + + +
Sbjct: 493 TAINHFQNALLLVKKTQSNEKPWAA 517
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 60.2 bits (146), Expect = 3e-10
Identities = 26/190 (13%), Positives = 52/190 (27%), Gaps = 45/190 (23%)
Query: 132 EEKEKEIE----QHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQL 187
EE + ++ + + + +L L + + + + I + L
Sbjct: 250 EEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLL 309
Query: 188 LKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMER 247
KA + +IL DP ++ Y + +
Sbjct: 310 CKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASL-------------------- 349
Query: 248 CKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRK 307
E + + + + +LV P +L GI Y + K
Sbjct: 350 --HESGEKN-------------------KLYLISNDLVDRHPEKAVTWLAVGIYYLCVNK 388
Query: 308 KDEAEKQFEK 317
EA + F K
Sbjct: 389 ISEARRYFSK 398
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 56.4 bits (136), Expect = 6e-09
Identities = 28/189 (14%), Positives = 56/189 (29%), Gaps = 9/189 (4%)
Query: 140 QHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGES 199
L + AL L E + A ++ + ++ L+ QV +
Sbjct: 158 FCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMC-YLRGQVYTNLSNF 216
Query: 200 EAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRD 259
+ A + ++E L D EA+ LV + L ++ + ++ K D
Sbjct: 217 DRAKECYKEALMVDAKCYEAFDQLVSNH------LLTADEEWDLVLKLNYSTYSKEDAAF 270
Query: 260 FKLLIAQIKVMESKHS--EALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEK 317
+ L S Y + + LC+ + + + K
Sbjct: 271 LRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTK 330
Query: 318 FRRLVPRNH 326
+ P N
Sbjct: 331 ILEIDPYNL 339
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 56.4 bits (136), Expect = 6e-09
Identities = 16/188 (8%), Positives = 42/188 (22%), Gaps = 2/188 (1%)
Query: 131 YEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKA 190
E + + +P A + +A+ L L
Sbjct: 389 ISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLG 448
Query: 191 QVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK 250
G A + + + L + + + + A+ KK
Sbjct: 449 MQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAF-NKSDMQTAINHFQNALLLVKK 507
Query: 251 -EKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKD 309
+ + + + A+ + + D + ++Y +
Sbjct: 508 TQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPG 567
Query: 310 EAEKQFEK 317
A +
Sbjct: 568 LAITHLHE 575
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 48.7 bits (116), Expect = 2e-06
Identities = 26/193 (13%), Positives = 55/193 (28%), Gaps = 18/193 (9%)
Query: 142 LAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEA 201
+ +P + + K+ EA + ++P + A + GE +
Sbjct: 366 VDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQ 425
Query: 202 AIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFK 261
AI + R Y L M + + + ++ + + D
Sbjct: 426 AISAYTTAARLFQGTHLPYLFLGMQH-MQLGNILLANEYLQSSYALFQY--------DPL 476
Query: 262 LL--IAQIKVMESKHSEALRVYEE-------LVKEEPRDFRPYLCQGIIYTLLRKKDEAE 312
LL + + +S A+ ++ E + G Y L+ D A
Sbjct: 477 LLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAI 536
Query: 313 KQFEKFRRLVPRN 325
+ L +
Sbjct: 537 DALNQGLLLSTND 549
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 43.3 bits (102), Expect = 9e-05
Identities = 16/99 (16%), Positives = 32/99 (32%)
Query: 130 SYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLK 189
++ +++ + L K + A+D +++ + L N+
Sbjct: 497 HFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAI 556
Query: 190 AQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYD 228
A V + AI E L P + A L A +
Sbjct: 557 ALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALE 595
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 41.7 bits (98), Expect = 3e-04
Identities = 27/235 (11%), Positives = 73/235 (31%), Gaps = 19/235 (8%)
Query: 105 PVAAAATVESTNESTKDTTSAREDVSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQK 164
+ +T+ + + ++ + +E+ + L+ + L+ + Q+
Sbjct: 44 SNSQLSTLTISPMTYLANNTSTDGSFLKERNAQNTDSLSR----EDYLRLWRHDALMQQQ 99
Query: 165 LVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAY---- 220
A V ++++++ N + L AQV G+ A + + Y
Sbjct: 100 YKCAAFVGEKVLDITGNPNDAFWL-AQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAF 158
Query: 221 -------HGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVMESK 273
+ G + EK K + + K ++ + L Q+ S
Sbjct: 159 CLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMC---YLRGQVYTNLSN 215
Query: 274 HSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHPY 328
A Y+E + + + + + + L ++ + + +
Sbjct: 216 FDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAF 270
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 63.8 bits (156), Expect = 9e-12
Identities = 27/206 (13%), Positives = 65/206 (31%), Gaps = 17/206 (8%)
Query: 131 YEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRL---IELEPNEFEWQL 187
Y E + + A N + K A I+ + +
Sbjct: 19 YAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFE 78
Query: 188 LKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMER 247
++ G+ AI+ ++ + +D R++ Y + + A++
Sbjct: 79 YYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYF----YNK----GNFPLAIQY 130
Query: 248 CKK--EKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLL 305
+K +D + F L Q ++ +A + ++++ +P + YL +
Sbjct: 131 MEKQIRPTTTDPKVFYEL-GQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQ 189
Query: 306 R---KKDEAEKQFEKFRRLVPRNHPY 328
K+ A+ +EK +
Sbjct: 190 DPDTKQGLAKPYYEKLIEVCAPGGAK 215
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 57.3 bits (139), Expect = 1e-09
Identities = 32/202 (15%), Positives = 68/202 (33%), Gaps = 23/202 (11%)
Query: 131 YEEKEKEIEQHLAA---NPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQL 187
Y+ +K+IE + + + ++ +K + A+ ++ + +
Sbjct: 53 YDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYG 112
Query: 188 LKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMER 247
G AI+ E+ +R + ++ L AY K KA
Sbjct: 113 QIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAY----YYN----KEYVKADSS 164
Query: 248 CKKE-KKKSDLRDFKLLIAQIKVM---ESKHSEALRVYE---ELVKEEPRDFRPYLCQ-- 298
K + K ++ L A+ ++K A YE E+ ++ L +
Sbjct: 165 FVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEAN 224
Query: 299 ---GIIYTLLRKKDEAEKQFEK 317
YT+ R K +A+ ++
Sbjct: 225 EYIAYYYTINRDKVKADAAWKN 246
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 52.3 bits (126), Expect = 6e-08
Identities = 21/160 (13%), Positives = 54/160 (33%), Gaps = 10/160 (6%)
Query: 161 KSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFE---EILRKDPLRV 217
K+ EA++V ++L + N +A + + A K E + +
Sbjct: 15 KNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKS 74
Query: 218 EAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSEA 277
+ + + ++ + A++ + + D I + A
Sbjct: 75 ADFEYYGKILMKK-GQDSLAIQQYQAAVD------RDTTRLDMYGQIGSYFYNKGNFPLA 127
Query: 278 LRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEK 317
++ E+ ++ D + + G Y ++ +A+ F K
Sbjct: 128 IQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVK 167
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 51.9 bits (125), Expect = 8e-08
Identities = 23/176 (13%), Positives = 53/176 (30%), Gaps = 4/176 (2%)
Query: 131 YEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKA 190
++ + + + ++ + A+ +++ I + +
Sbjct: 90 DSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELG 149
Query: 191 QVQSYAGESEAAIKGFEEILRKDPLRVEAYH--GLVMAYDGSDKKLNEVEKRIEKAME-- 246
Q Y E A F ++L P Y A D K + EK +E
Sbjct: 150 QAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVC 209
Query: 247 RCKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIY 302
K K +L + IA + +A ++ ++ +P + + +
Sbjct: 210 APGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKL 265
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 1e-04
Identities = 23/131 (17%), Positives = 44/131 (33%), Gaps = 8/131 (6%)
Query: 189 KAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERC 248
A AI+ F ++ K Y+ + Y +L + + K +E
Sbjct: 9 YADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCY----YELAKYDLAQ-KDIETY 63
Query: 249 KK--EKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLR 306
K+ DF+ +I + + + S A++ Y+ V + Y G +
Sbjct: 64 FSKVNATKAKSADFEYY-GKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKG 122
Query: 307 KKDEAEKQFEK 317
A + EK
Sbjct: 123 NFPLAIQYMEK 133
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 63.7 bits (154), Expect = 4e-11
Identities = 57/447 (12%), Positives = 121/447 (27%), Gaps = 137/447 (30%)
Query: 7 LHG----GHQPL---SLSFNHHRPSFPKSISFISLRTPPSSSPFKFSCIRASSSPASQQN 59
+ G G + + I +++L+ +C + Q
Sbjct: 155 IDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLK----------NCNSPETVLEMLQK 204
Query: 60 PKPSLLRTLTPLSSPLIKITSVTVAAAALLFMRLPFHSIKPA---------------IAA 104
LL + P + +S +L HSI+ +
Sbjct: 205 ----LLYQIDPNWTSRSDHSSNI---------KLRIHSIQAELRRLLKSKPYENCLLVLL 251
Query: 105 PVAAAATVESTNES------TKDTTSAREDVSYEEKEKEIEQHLAANPNDIEALQTLME- 157
V A + N S T+ + ++ H D E L++
Sbjct: 252 NVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPD-EVKSLLLKY 310
Query: 158 VRIKSQKL-VEAVDVIDRLIEL-------EPNEFE-------WQLLKAQVQSYAGESEAA 202
+ + Q L E + R + + ++ +L S A
Sbjct: 311 LDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAE 370
Query: 203 IKG-FEE--ILRKD---PLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERC--KKEKKK 254
+ F+ + P + L + + K ++V + K + +K+ K+
Sbjct: 371 YRKMFDRLSVFPPSAHIPTIL-----LSLIWFDVIK--SDVMVVVNKLHKYSLVEKQPKE 423
Query: 255 S-----DL-RDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRP-----YLCQGIIYT 303
S + + K+ + + H + Y + D P Y I +
Sbjct: 424 STISIPSIYLELKVKLENEYAL---HRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHH 480
Query: 304 LLRKKDEAEK------------------------------------QFEKFRRLVPRNHP 327
L + + E+ Q + ++ + N P
Sbjct: 481 L-KNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDP 539
Query: 328 YREYFVDNMVATKIFGEKVDRESMASK 354
E V+ ++ F K++ + SK
Sbjct: 540 KYERLVNAILD---FLPKIEENLICSK 563
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 56.0 bits (134), Expect = 9e-09
Identities = 48/323 (14%), Positives = 99/323 (30%), Gaps = 129/323 (39%)
Query: 127 EDVSYEEKE----KEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIE--LEP 180
+DV K +EI+ H+ + + + L + Q+ +++ + +E L
Sbjct: 36 KDVQDMPKSILSKEEID-HIIMSKDAVSGTLRLFWTLLSKQE-----EMVQKFVEEVLRI 89
Query: 181 NEFEWQLLKAQVQSYAGESEAAIKGFEE----------------ILRKDP---------- 214
N +++ L + +++ + + + E + R P
Sbjct: 90 N-YKF--LMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLE 146
Query: 215 LRVEAY---HGLVMAYDGSDKK-L-NEV--EKRIEKAME---------RCKKEKKKSDLR 258
LR G + GS K + +V +++ M+ C ++ L
Sbjct: 147 LRPAKNVLIDG--VL--GSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSP--ETVLE 200
Query: 259 DFKLLIAQIKVM---ESKHSEALRVYEELVKEEPRDF---RPY---L------------- 296
+ L+ QI S HS +++ ++ E R +PY L
Sbjct: 201 MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWN 260
Query: 297 -----CQGIIYTLLRKK-------------------------DEAEKQFEKF-------- 318
C+ ++ T R K DE + K+
Sbjct: 261 AFNLSCKILLTT--RFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL 318
Query: 319 RRLVPRNHPYREYFVDNMVATKI 341
R V +P +++A I
Sbjct: 319 PREVLTTNP----RRLSIIAESI 337
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 60.1 bits (146), Expect = 8e-11
Identities = 28/211 (13%), Positives = 58/211 (27%), Gaps = 56/211 (26%)
Query: 131 YEEKEKEIEQHLAANPNDIEA----------------LQTLMEVRIKSQKLVEAVDVIDR 174
+ Q +A N + E L K++ +A
Sbjct: 20 NGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKE 79
Query: 175 LIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKL 234
L++ PN + A++Q G+ + A++ +E+IL+ + + A L Y
Sbjct: 80 LLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYY------- 132
Query: 235 NEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRP 294
++EKK L + + +
Sbjct: 133 ----------YLTAEQEKK-----------------------KLETDYKKLSSPTKMQYA 159
Query: 295 YLCQGIIYTLLRKKDEAEKQFEKFRRLVPRN 325
G+ + ++A +K P
Sbjct: 160 RYRDGLSKLFTTRYEKARNSLQKVILRFPST 190
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 47.8 bits (114), Expect = 1e-06
Identities = 24/143 (16%), Positives = 52/143 (36%), Gaps = 25/143 (17%)
Query: 183 FEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIE 242
+ L K AG++ A+ F + + + R E Y Y + K +E+ ++
Sbjct: 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMY------YWTNVDKNSEISSKLA 57
Query: 243 KAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIY 302
+ K+ + D +A Y+EL+++ P + +
Sbjct: 58 TELALAYKKNRNYD-------------------KAYLFYKELLQKAPNNVDCLEACAEMQ 98
Query: 303 TLLRKKDEAEKQFEKFRRLVPRN 325
++ +A + +EK +L N
Sbjct: 99 VCRGQEKDALRMYEKILQLEADN 121
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 61.7 bits (150), Expect = 1e-10
Identities = 18/201 (8%), Positives = 46/201 (22%), Gaps = 17/201 (8%)
Query: 131 YEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKA 190
+ + Q P + A+ + + + + + V+ + L P +
Sbjct: 122 VQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQALLPVLCQAHGLTPEQVVAIASNG 181
Query: 191 QVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIE---KAMER 247
+ + + + P +V A + L V++ + +A
Sbjct: 182 GGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGK----QALETVQRLLPVLCQAHGL 237
Query: 248 CKKEKKKSDLRD--FKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLL 305
+ + L V + P+ L
Sbjct: 238 ------TPQQVVAIASNGGGKQAL--ETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQAL 289
Query: 306 RKKDEAEKQFEKFRRLVPRNH 326
+ L P+
Sbjct: 290 ETVQRLLPVLCQAHGLTPQQV 310
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 59.0 bits (143), Expect = 9e-10
Identities = 18/197 (9%), Positives = 45/197 (22%), Gaps = 9/197 (4%)
Query: 131 YEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKA 190
+ + Q P + A+ + + + + + V+ + L P +
Sbjct: 88 VQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHD 147
Query: 191 QVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK 250
+ +A + + P +V A + +++ + +
Sbjct: 148 GGKQALETVQALLPVLCQAHGLTPEQVVAIASNGGGKQAL--------ETVQRLLPVLCQ 199
Query: 251 EKK-KSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKD 309
K L V + P+ G L
Sbjct: 200 AHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQ 259
Query: 310 EAEKQFEKFRRLVPRNH 326
+ L P+
Sbjct: 260 RLLPVLCQAHGLTPQQV 276
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 58.2 bits (141), Expect = 1e-09
Identities = 17/190 (8%), Positives = 42/190 (22%), Gaps = 13/190 (6%)
Query: 131 YEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKA 190
+ + Q P + A+ + + + + + V+ + L P +
Sbjct: 190 VQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNG 249
Query: 191 QVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIE---KAMER 247
+ + + + P +V A + L V++ + +A
Sbjct: 250 GGKQALETVQRLLPVLCQAHGLTPQQVVAIASNSGGK----QALETVQRLLPVLCQAHGL 305
Query: 248 CKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRK 307
K L V + P+ L
Sbjct: 306 ------TPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALET 359
Query: 308 KDEAEKQFEK 317
+
Sbjct: 360 VQRLLPVLCQ 369
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 58.2 bits (141), Expect = 1e-09
Identities = 17/181 (9%), Positives = 45/181 (24%), Gaps = 7/181 (3%)
Query: 145 NPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIK 204
P + A+ + + + + + V+ + L P + + + +
Sbjct: 68 TPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLP 127
Query: 205 GFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLI 264
+ P +V A + L V+ + + + + +
Sbjct: 128 VLCQAHGLTPEQVVAIASHDGGK----QALETVQALLP-VLCQAHGLTPEQVVAIASNGG 182
Query: 265 AQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPR 324
+ + L V + P+ G L + L P+
Sbjct: 183 GKQAL--ETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQ 240
Query: 325 N 325
Sbjct: 241 Q 241
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 57.1 bits (138), Expect = 3e-09
Identities = 19/199 (9%), Positives = 48/199 (24%), Gaps = 13/199 (6%)
Query: 131 YEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKA 190
+ + Q P + A+ + + + + + V+ + L P +
Sbjct: 292 VQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHD 351
Query: 191 QVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIE---KAMER 247
+ + + + P +V A + L V++ + +A
Sbjct: 352 GGKQALETVQRLLPVLCQAHGLTPEQVVAIASNGGGK----QALETVQRLLPVLCQAHGL 407
Query: 248 CKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRK 307
+ K L V + P+ G L
Sbjct: 408 ------TPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGRPALES 461
Query: 308 KDEAEKQFEKFRRLVPRNH 326
+ + + +H
Sbjct: 462 IVAQLSRPDPALAALTNDH 480
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 51.7 bits (124), Expect = 2e-07
Identities = 18/197 (9%), Positives = 47/197 (23%), Gaps = 9/197 (4%)
Query: 131 YEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKA 190
+ + Q P + A+ + + + + + V+ + L P +
Sbjct: 156 VQALLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNG 215
Query: 191 QVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK 250
+ + + + P +V A + L + +++ + +
Sbjct: 216 GGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGK----QAL----ETVQRLLPVLCQ 267
Query: 251 E-KKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKD 309
+ K L V + P+ G L
Sbjct: 268 AHGLTPQQVVAIASNSGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQ 327
Query: 310 EAEKQFEKFRRLVPRNH 326
+ L P+
Sbjct: 328 RLLPVLCQAHGLTPQQV 344
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 50.5 bits (121), Expect = 4e-07
Identities = 23/199 (11%), Positives = 46/199 (23%), Gaps = 14/199 (7%)
Query: 133 EKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVD-----VIDRLIELEPNEFEWQL 187
E + L P ++ Q L + VEAV + + L P +
Sbjct: 17 EALLTVAGELRGPPLQLDTGQLLKIAKRGGVTAVEAVHAWRNALTGAPLNLTPEQVVAIA 76
Query: 188 LKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMER 247
+ + + + P +V A + L + +++ +
Sbjct: 77 SHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGK----QAL----ETVQRLLPV 128
Query: 248 CKKEKK-KSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLR 306
+ + K L V + P G L
Sbjct: 129 LCQAHGLTPEQVVAIASHDGGKQALETVQALLPVLCQAHGLTPEQVVAIASNGGGKQALE 188
Query: 307 KKDEAEKQFEKFRRLVPRN 325
+ L P+
Sbjct: 189 TVQRLLPVLCQAHGLTPQQ 207
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177 | Back alignment and structure |
|---|
Score = 58.0 bits (140), Expect = 3e-10
Identities = 16/101 (15%), Positives = 33/101 (32%), Gaps = 3/101 (2%)
Query: 130 SYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLK 189
+ E + + ++ + ANP + E L E + ++ + ++L E
Sbjct: 25 NPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAAL 84
Query: 190 AQVQSYAGE---SEAAIKGFEEILRKDPLRVEAYHGLVMAY 227
A V Y + ++ L D + A L
Sbjct: 85 ATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDA 125
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177 | Back alignment and structure |
|---|
Score = 47.9 bits (114), Expect = 7e-07
Identities = 16/159 (10%), Positives = 53/159 (33%), Gaps = 19/159 (11%)
Query: 184 EWQLLKAQVQSYA---------GESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKL 234
+WQ ++A+ Q EA ++ ++ +R +P E + L Y +
Sbjct: 2 KWQAVRAEYQRQRDPLHQFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQND-Y 60
Query: 235 NEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVMESKHS---EALRVYEELVKEEPRD 291
+ +A++ + + + +A + ++ + + ++ + + +
Sbjct: 61 SNSLLAYRQALQL------RGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNE 114
Query: 292 FRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHPYRE 330
+ + +A + ++K L +
Sbjct: 115 ITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQ 153
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177 | Back alignment and structure |
|---|
Score = 45.6 bits (108), Expect = 5e-06
Identities = 25/173 (14%), Positives = 63/173 (36%), Gaps = 10/173 (5%)
Query: 146 PNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKG 205
+ + + + Q + + I P E L + + + ++
Sbjct: 7 RAEYQRQRDPLHQFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLA 66
Query: 206 FEEILRKDPLRVEAY--HGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLL 263
+ + L+ E Y V+ Y S + I+KA+ S+ +L
Sbjct: 67 YRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKAL------ALDSNEITALML 120
Query: 264 IAQIKVMESKHSEALRVYEELVKEEPRDF-RPYLCQGIIY-TLLRKKDEAEKQ 314
+A M++ +++A+ ++++++ R L + I LL+++ + E
Sbjct: 121 LASDAFMQANYAQAIELWQKVMDLNSPRINRTQLVESINMAKLLQRRSDLEHH 173
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 59.4 bits (143), Expect = 3e-10
Identities = 26/217 (11%), Positives = 77/217 (35%), Gaps = 18/217 (8%)
Query: 114 STNESTKDTTSAREDVSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVID 173
+ +D R ++ + +++ ++ +++A++ E + V +D
Sbjct: 30 PERDVERDVFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASHSRRDAIVAELD 89
Query: 174 RLIE--LEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSD 231
R + ++ + L+ A + Y +AA++ + + + + L +
Sbjct: 90 REMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQGDSLECMAMTVQILLKL------ 143
Query: 232 KKLNEVEKRIEKAMERCKKEKKKS-DLRDFKLLIAQIKVM--ESKHSEALRVYEELVKEE 288
R++ A + KK + + D +L A + + K +A +++E+ +
Sbjct: 144 -------DRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC 196
Query: 289 PRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRN 325
Q + + + AE ++ +
Sbjct: 197 SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGH 233
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 52.1 bits (124), Expect = 9e-08
Identities = 25/202 (12%), Positives = 67/202 (33%), Gaps = 16/202 (7%)
Query: 131 YEEKEKEIEQHLA--ANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLL 188
+ E+++ ++ + + L + Q A+ + + + E +
Sbjct: 81 RDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLH-----QGDSLECMAM 135
Query: 189 KAQVQSYAGESEAAIKGFEEILRKDP--LRVEAYHGLVMAYDGSDKKLNEVEKRIEKAME 246
Q+ + A K +++ +D + V G +K L + ++ +
Sbjct: 136 TVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEK-LQDAYYIFQEMAD 194
Query: 247 RCKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLR 306
+C S A + + + A V +E + ++ + ++ L
Sbjct: 195 KC------SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLG 248
Query: 307 KKDEAEKQFEKFRRLVPRNHPY 328
K E ++ + R+HP+
Sbjct: 249 KPPEVTNRYLSQLKDAHRSHPF 270
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474 | Back alignment and structure |
|---|
Score = 59.3 bits (143), Expect = 7e-10
Identities = 33/201 (16%), Positives = 66/201 (32%), Gaps = 12/201 (5%)
Query: 131 YEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQ---- 186
E E + + + P +EA L EV K + A + N+ Q
Sbjct: 119 SPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKNKVSLQNLSM 178
Query: 187 LLKAQVQSYAGES----EAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIE 242
+L+ E +++ + ++ D L +++ L AY + K +
Sbjct: 179 VLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQ 238
Query: 243 KAMERCKK-EKKKSDLRDFKLL---IAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQ 298
+A+ + EK L A + E + EAL + + +P P +
Sbjct: 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQRE 298
Query: 299 GIIYTLLRKKDEAEKQFEKFR 319
+ L + + K +
Sbjct: 299 QQLLEFLSRLTSLLESKGKTK 319
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 58.5 bits (142), Expect = 8e-10
Identities = 30/203 (14%), Positives = 60/203 (29%), Gaps = 15/203 (7%)
Query: 125 AREDVSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFE 184
A+ V+ EK H D R+K L + ++ I +P + E
Sbjct: 41 AQNQVTVSASEKGYYFHTENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAE 100
Query: 185 WQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKA 244
Q+ +AAI + L P ++A L ++Y + + ++
Sbjct: 101 AWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTN-TSHQQDACEALKNW 159
Query: 245 MER--------CKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEP--RDFRP 294
+++ K+ R +Y E + D
Sbjct: 160 IKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSS----VLEGVKELYLEAAHQNGDMIDPDL 215
Query: 295 YLCQGIIYTLLRKKDEAEKQFEK 317
G+++ L + + A F
Sbjct: 216 QTGLGVLFHLSGEFNRAIDAFNA 238
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 46.6 bits (111), Expect = 7e-06
Identities = 28/192 (14%), Positives = 67/192 (34%), Gaps = 5/192 (2%)
Query: 131 YEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKA 190
+E + +P D EA Q L + +++ A+ + R +EL+PN + + A
Sbjct: 81 LPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALA 140
Query: 191 QVQSYAGESEAAIKGFEEILRKDPLRVEAYH--GLVMAYDGSDKKLNEVEKRIEKAMERC 248
+ + A + + ++++P K +E E
Sbjct: 141 VSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELY 200
Query: 249 KK-EKKKSDLRDFKLLIAQ--IKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLL 305
+ + D+ D L + + + + A+ + + P D+ + G
Sbjct: 201 LEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANG 260
Query: 306 RKKDEAEKQFEK 317
+ +EA + + +
Sbjct: 261 DRSEEAVEAYTR 272
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 40.0 bits (94), Expect = 7e-04
Identities = 18/132 (13%), Positives = 41/132 (31%), Gaps = 3/132 (2%)
Query: 196 AGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKS 255
A E E A E + + S+ + + + + + E+ ++
Sbjct: 2 AMEFERAKAAVESDTEFWDKMQAEWEEMARRNWISENQEAQNQVTVSAS-EKGYYFHTEN 60
Query: 256 DLRDFK--LLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEK 313
+D+ ++ E + E + ++P D + GI + A
Sbjct: 61 PFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIV 120
Query: 314 QFEKFRRLVPRN 325
++ L P N
Sbjct: 121 ALQRCLELQPNN 132
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 56.0 bits (136), Expect = 2e-09
Identities = 28/189 (14%), Positives = 57/189 (30%), Gaps = 12/189 (6%)
Query: 130 SYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLK 189
+ + + + +A + + IE + +
Sbjct: 7 HHHHSSGLVPRGSHMASMTGGQQM---GRGSEFGDYEKAAEAFTKAIEENKEDAIPYINF 63
Query: 190 AQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCK 249
A + S E E A+ +++ L D AY+G Y + ++A + +
Sbjct: 64 ANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVY----VVK----EMYKEAKDMFE 115
Query: 250 KE-KKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKK 308
K + + D ++ + V + AL + V+ D G+
Sbjct: 116 KALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGML 175
Query: 309 DEAEKQFEK 317
DEA QF
Sbjct: 176 DEALSQFAA 184
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 54.4 bits (132), Expect = 8e-09
Identities = 28/188 (14%), Positives = 66/188 (35%), Gaps = 9/188 (4%)
Query: 131 YEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKA 190
YE+ + + + N D + +L A+ D+ +EL+ +
Sbjct: 39 YEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAG 98
Query: 191 QVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK 250
V + A FE+ LR + ++ L KL ++ + A+ ++
Sbjct: 99 NVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVL----VKL----EQPKLALPYLQR 150
Query: 251 E-KKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKD 309
+ + + + E EAL + + +++P + G+ Y ++
Sbjct: 151 AVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENRE 210
Query: 310 EAEKQFEK 317
+A + +K
Sbjct: 211 KALEMLDK 218
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 57.5 bits (138), Expect = 3e-09
Identities = 30/185 (16%), Positives = 69/185 (37%), Gaps = 9/185 (4%)
Query: 142 LAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEA 201
+ P ++L L ++ + + EAV + + +E+ P A V G+ +
Sbjct: 2 PGSCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQE 61
Query: 202 AIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDF 260
A+ ++E +R P +AY + K++ ++ A++ + + D
Sbjct: 62 ALMHYKEAIRISPTFADAYSNMGNTL----KEMQ----DVQGALQCYTRAIQINPAFADA 113
Query: 261 KLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRR 320
+A I EA+ Y +K +P Y ++ + +++ +K
Sbjct: 114 HSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVS 173
Query: 321 LVPRN 325
+V
Sbjct: 174 IVADQ 178
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 49.8 bits (118), Expect = 9e-07
Identities = 29/188 (15%), Positives = 58/188 (30%), Gaps = 10/188 (5%)
Query: 131 YEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKA 190
EE + + L P A L V + KL EA+ I + P +
Sbjct: 25 IEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMG 84
Query: 191 QVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK 250
+ + A++ + ++ +P +A+ L + + I +A+ +
Sbjct: 85 NTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIH--------KDSGNIPEAIASYRT 136
Query: 251 -EKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKD 309
K K D D +A + ++ ++LV D ++
Sbjct: 137 ALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVA-DQLEKNRLPSVHPHHSMLY 195
Query: 310 EAEKQFEK 317
F K
Sbjct: 196 PLSHGFRK 203
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 55.8 bits (135), Expect = 6e-09
Identities = 26/184 (14%), Positives = 54/184 (29%), Gaps = 13/184 (7%)
Query: 145 NPN-DIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFE-WQLLKAQVQSYAGESEAA 202
NP E +K L EA + + + P E W+ L Q+ + A
Sbjct: 16 NPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSL-GLTQAENEKDGLA 74
Query: 203 IKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAME---------RCKKEKK 253
I DP + + L +++ ++ N + + +
Sbjct: 75 IIALNHARMLDPKDIAVHAALAVSH-TNEHNANAALASLRAWLLSQPQYEQLGSVNLQAD 133
Query: 254 KSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEK 313
+++ E + ++ P D + + G++Y L D A
Sbjct: 134 VDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAA 193
Query: 314 QFEK 317
+
Sbjct: 194 NLRR 197
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 40.4 bits (95), Expect = 6e-04
Identities = 27/205 (13%), Positives = 54/205 (26%), Gaps = 28/205 (13%)
Query: 131 YEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFE------ 184
+ +P DI L A+ + + +P +
Sbjct: 71 DGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNL 130
Query: 185 ---------WQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLN 235
+ + E L +P + + L + Y+ S
Sbjct: 131 QADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLS----- 185
Query: 236 EVEKRIEKAMERCKKE-KKKSDLRD--FKLLIAQIKVMESKHSEALRVYEELVKEEPRDF 292
+ A ++ + + D KL ++ EAL Y + P
Sbjct: 186 ---NNYDSAAANLRRAVELRPDDAQLWNKLGATLAN--GNRPQEALDAYNRALDINPGYV 240
Query: 293 RPYLCQGIIYTLLRKKDEAEKQFEK 317
R + Y+ + + D A KQ +
Sbjct: 241 RVMYNMAVSYSNMSQYDLAAKQLVR 265
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 53.2 bits (128), Expect = 6e-09
Identities = 23/156 (14%), Positives = 36/156 (23%), Gaps = 41/156 (26%)
Query: 175 LIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKL 234
L L + E Q AG+ + A K F+ + D + GL
Sbjct: 10 LRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQ------ 63
Query: 235 NEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRP 294
+ +AL+ Y + + R
Sbjct: 64 -----------------------------------SLGLYEQALQSYSYGALMDINEPRF 88
Query: 295 YLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHPYRE 330
+ L D AE F R L +
Sbjct: 89 PFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEA 124
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 8e-07
Identities = 16/135 (11%), Positives = 39/135 (28%), Gaps = 2/135 (1%)
Query: 140 QHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGES 199
+ + +E L L + ++ K +A + L L+ + + L + G
Sbjct: 9 MLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLY 68
Query: 200 EAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRD 259
E A++ + D + L+ E A + L
Sbjct: 69 EQALQSYSYGALMDINEPRFPFHAAECHLQL-GDLDGAESGFYSARALAAAQPAHEALAA 127
Query: 260 -FKLLIAQIKVMESK 273
++ + + +
Sbjct: 128 RAGAMLEAVTARKDR 142
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 40.5 bits (95), Expect = 2e-04
Identities = 12/84 (14%), Positives = 26/84 (30%)
Query: 131 YEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKA 190
+++ +K + + D L R +A+ ++ NE + A
Sbjct: 34 WDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAA 93
Query: 191 QVQSYAGESEAAIKGFEEILRKDP 214
+ G+ + A GF
Sbjct: 94 ECHLQLGDLDGAESGFYSARALAA 117
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 54.1 bits (131), Expect = 1e-08
Identities = 21/197 (10%), Positives = 55/197 (27%), Gaps = 10/197 (5%)
Query: 131 YEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKA 190
YE + + + + + + + + + IE A
Sbjct: 54 YETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHR-TA 112
Query: 191 QVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK 250
+ + +E +K E +P + E Y A++ +
Sbjct: 113 DILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEY----FTK----SDWPNAVKAYTE 164
Query: 251 E-KKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKD 309
K+ + A EA+ + ++++P R Y+ + +++
Sbjct: 165 MIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYA 224
Query: 310 EAEKQFEKFRRLVPRNH 326
A + + R +
Sbjct: 225 SALETLDAARTKDAEVN 241
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 51.8 bits (125), Expect = 7e-08
Identities = 26/187 (13%), Positives = 60/187 (32%), Gaps = 9/187 (4%)
Query: 131 YEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKA 190
++E + + + DI L + + A+ ++ +E + +
Sbjct: 21 FDEAIEHYNKAWELHK-DITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVIS 79
Query: 191 QVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK 250
+ + G + + ++ + + H KL EK ++ + +
Sbjct: 80 KSFARIGNAYHKLGDLKKTIEYYQ-KSLTEHRTADIL----TKLRNAEKELK---KAEAE 131
Query: 251 EKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDE 310
+ + L + +S A++ Y E++K P D R Y + L E
Sbjct: 132 AYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPE 191
Query: 311 AEKQFEK 317
A K
Sbjct: 192 AIADCNK 198
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 47.9 bits (115), Expect = 1e-06
Identities = 25/174 (14%), Positives = 55/174 (31%), Gaps = 13/174 (7%)
Query: 146 PNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKG 205
+ + + K+++ EA++ ++ EL + +A + GE E AI
Sbjct: 2 GSMADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYL-NNRAAAEYEKGEYETAIST 60
Query: 206 FEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK--EKKKSDLRDFKLL 263
+ + + Y + ++ ++ + KK E + L + +
Sbjct: 61 LNDAVEQGREMRADYKVISKSF----ARIG----NAYHKLGDLKKTIEYYQKSLTEHRT- 111
Query: 264 IAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEK 317
A I + L+ E P +G Y A K + +
Sbjct: 112 -ADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTE 164
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 55.1 bits (133), Expect = 1e-08
Identities = 28/187 (14%), Positives = 70/187 (37%), Gaps = 25/187 (13%)
Query: 131 YEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKA 190
Y+ +++ ++ + NP ++ L + K K E+ + P E A
Sbjct: 326 YKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFA 385
Query: 191 QVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK 250
++ + G+ + AIK ++ R + ++ + + G+
Sbjct: 386 EILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLI----------------------- 422
Query: 251 EKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDE 310
K+ + + ++ E K + A+++ + + +PR + + + + K DE
Sbjct: 423 --GKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDE 480
Query: 311 AEKQFEK 317
A + FE
Sbjct: 481 AIELFED 487
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 51.6 bits (124), Expect = 2e-07
Identities = 25/204 (12%), Positives = 60/204 (29%), Gaps = 26/204 (12%)
Query: 131 YEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKA 190
+ + +++ + +P + L + E + ++L P +
Sbjct: 259 LLDAQVLLQESINLHPTP-NSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRG 317
Query: 191 QVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK 250
Q+ + + A + F++ +P V Y L K + ++ +
Sbjct: 318 QMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLL----YKQG----KFTESEAFFNE 369
Query: 251 E-KKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYT------ 303
K L + A+I A++ Y+ + E + ++ G +
Sbjct: 370 TKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILA 429
Query: 304 ----------LLRKKDEAEKQFEK 317
K + A K K
Sbjct: 430 RQSSQDPTQLDEEKFNAAIKLLTK 453
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 49.0 bits (117), Expect = 1e-06
Identities = 27/239 (11%), Positives = 64/239 (26%), Gaps = 41/239 (17%)
Query: 131 YEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKA 190
+ E K + + +PN+ + I + L + ++ + +E++P+ + L +A
Sbjct: 41 FNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRA 100
Query: 191 QVQSYAGESEAAIKGFEEI-----------------------LRKDPLRVEAYHGLVMAY 227
G A+ + ++ + G
Sbjct: 101 SANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQV 160
Query: 228 DGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVMES--------------- 272
S+ L + +E + + LL ++ + S
Sbjct: 161 LPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTK 220
Query: 273 ---KHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHPY 328
+ L GI + L +A+ ++ L P + Y
Sbjct: 221 STDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPTPNSY 279
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 47.4 bits (113), Expect = 4e-06
Identities = 30/203 (14%), Positives = 57/203 (28%), Gaps = 21/203 (10%)
Query: 131 YEEKEKEIEQHLAANPNDI----EALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQ 186
+ E +I Q +P+ L+ ++ EA+ IEL+PNE +
Sbjct: 3 HMNGEPDIAQLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFY 62
Query: 187 LLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAME 246
+ G+ E I+ + L P +A A + L AM
Sbjct: 63 SNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASAN----ESL----GNFTDAMF 114
Query: 247 RCKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLR 306
D + + + +A++V E + ++ L
Sbjct: 115 DLSVLSLNGDFDGASIEPMLERNLN---KQAMKVLNENLSKDEGRGSQVLPSNTSL---- 167
Query: 307 KKDEAEKQFEKFRRLVPRNHPYR 329
F+ + N
Sbjct: 168 --ASFFGIFDSHLEVSSVNTSSN 188
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 45.5 bits (108), Expect = 2e-05
Identities = 16/91 (17%), Positives = 39/91 (42%), Gaps = 2/91 (2%)
Query: 131 YEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKA 190
+ K + + +P +A L +++++ +K+ EA+++ + L E L+A
Sbjct: 444 FNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDE--KLQA 501
Query: 191 QVQSYAGESEAAIKGFEEILRKDPLRVEAYH 221
+ A + + ++ I K L + Y
Sbjct: 502 TTFAEAAKIQKRLRADPIISAKMELTLARYR 532
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 54.1 bits (130), Expect = 3e-08
Identities = 24/170 (14%), Positives = 51/170 (30%), Gaps = 11/170 (6%)
Query: 165 LVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLV 224
+ + + P +F L+ A + G++ A + L P EA L
Sbjct: 5 GPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLG 64
Query: 225 MAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEEL 284
+ ++ E +++A + + L + + A Y
Sbjct: 65 RVRW-TQQRHAEAAVLLQQASDA------APEHPGIALWLGHALEDAGQAEAAAAAYTRA 117
Query: 285 VKEEPRDFRPYLCQGIIYTLLR--KKDEAEKQFEKFRRLVPRNHPYREYF 332
+ P + PY+ ++ R + + R V + E F
Sbjct: 118 HQLLPEE--PYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVEPF 165
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 52.9 bits (127), Expect = 7e-08
Identities = 24/198 (12%), Positives = 53/198 (26%), Gaps = 6/198 (3%)
Query: 131 YEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKA 190
+ ++ + P D A L + + + R + L P E
Sbjct: 5 GPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLG 64
Query: 191 QVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK 250
+V+ A ++ P L A + + E A R +
Sbjct: 65 RVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHAL----EDAGQAEAAAA-AYTRAHQ 119
Query: 251 EKKKSDLRDFKLLIAQIKVMESKHSEALRV-YEELVKEEPRDFRPYLCQGIIYTLLRKKD 309
+ +LL + ++ + + + L V + P+ + +
Sbjct: 120 LLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVEPFAFLSEDASAAEQLA 179
Query: 310 EAEKQFEKFRRLVPRNHP 327
A + + V P
Sbjct: 180 CARTRAQAIAASVRPLAP 197
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 50.2 bits (120), Expect = 5e-07
Identities = 16/131 (12%), Positives = 41/131 (31%), Gaps = 7/131 (5%)
Query: 196 AGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKS 255
+ + +R P A+ L A G E +++ +
Sbjct: 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGM-GDTTAGEMAVQRGLAL------HP 54
Query: 256 DLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQF 315
+ + +++ + +H+EA + ++ P L G + + A +
Sbjct: 55 GHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAY 114
Query: 316 EKFRRLVPRNH 326
+ +L+P
Sbjct: 115 TRAHQLLPEEP 125
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 52.3 bits (126), Expect = 6e-08
Identities = 33/234 (14%), Positives = 74/234 (31%), Gaps = 34/234 (14%)
Query: 131 YEEKEKEIEQHLAA---NPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQL 187
+ L +A L ++ +A + + +E++P+ +
Sbjct: 16 PRGSHMGDQNPLKTDKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHA 75
Query: 188 LKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAME- 246
A V E + A + + + L D + K+ E +R+ +A +
Sbjct: 76 ALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFL-YEQKRYEEAYQRLLEASQD 134
Query: 247 --------------RCKKEKKKSD--LRDFK-------------LLIAQIKVMESKHSEA 277
+ KK F+ L +A + E ++ A
Sbjct: 135 TLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPA 194
Query: 278 LRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHPYREY 331
+ Y+ + ++ R L + + +D A + +RL P + Y+E+
Sbjct: 195 RQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQEF 248
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 49.4 bits (118), Expect = 2e-07
Identities = 11/134 (8%), Positives = 38/134 (28%), Gaps = 1/134 (0%)
Query: 119 TKDTTSAREDVSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIEL 178
T++ + + + ++ A + ++ + + ++ EA L
Sbjct: 6 TENESISTAVIDAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY 65
Query: 179 EPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVE 238
+ ++ + A + + + A + K + +
Sbjct: 66 DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRL-KAPLKAK 124
Query: 239 KRIEKAMERCKKEK 252
+ E ++ EK
Sbjct: 125 ECFELVIQHSNDEK 138
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 48.3 bits (115), Expect = 3e-07
Identities = 22/183 (12%), Positives = 43/183 (23%), Gaps = 45/183 (24%)
Query: 144 ANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAI 203
+ N E V + + + + + + + A G E A
Sbjct: 1 GSLNITENESISTAV----IDAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAE 56
Query: 204 KGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLL 263
F + D V+ GL Y
Sbjct: 57 VFFRFLCIYDFYNVDYIMGLAAIY------------------------------------ 80
Query: 264 IAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVP 323
++ + +A +Y D+ P G L+ +A++ FE +
Sbjct: 81 -----QIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSN 135
Query: 324 RNH 326
Sbjct: 136 DEK 138
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 50.4 bits (121), Expect = 3e-07
Identities = 26/216 (12%), Positives = 60/216 (27%), Gaps = 29/216 (13%)
Query: 131 YEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKA 190
+ Q LA P+ E L ++ A + D ++EL+P L +
Sbjct: 59 RALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRG 118
Query: 191 QVQSYAGESEAAIKGFEEILRKDPLRVEAYH--GLVMAYDGSDKKLNEVEKRIEKAMER- 247
Y G + A + DP L + +++ EK+ +
Sbjct: 119 IALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQ 178
Query: 248 -------------CKKEKKKSDLRDFKLLI-------------AQIKVMESKHSEALRVY 281
++ + D + + A ++
Sbjct: 179 WGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALF 238
Query: 282 EELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEK 317
+ V +F + + +LL + + + ++
Sbjct: 239 KLAVANNVHNFVEHRYALLELSLLGQDQDDLAESDQ 274
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 1e-05
Identities = 27/224 (12%), Positives = 62/224 (27%), Gaps = 35/224 (15%)
Query: 126 REDVSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEW 185
+++V E+ + + + L + A + + + + P+ E
Sbjct: 20 QQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEV 79
Query: 186 QLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYH--GLVMAYDGSDKKLNEVEKRIEK 243
+ AG +AA + F+ +L DP A+ G+ + Y G + + +
Sbjct: 80 FNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGG---RDKLAQDDLLA 136
Query: 244 A------------------MERCKKEKKKSDLRDFKLLIAQ------------IKVMESK 273
+ +K+ K+ + F+ + ++
Sbjct: 137 FYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTL 196
Query: 274 HSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEK 317
+ G Y L D A F+
Sbjct: 197 MERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKL 240
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 | Back alignment and structure |
|---|
Score = 49.3 bits (118), Expect = 7e-07
Identities = 32/217 (14%), Positives = 68/217 (31%), Gaps = 14/217 (6%)
Query: 113 ESTNESTKDTTSAREDVSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVI 172
+ S +D++ +K + D R++ L AV +
Sbjct: 28 AKRDAEAHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLF 87
Query: 173 DRLIELEPNEFE-WQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSD 231
+ ++ +P E WQ L Q+ + AI L P A L +++ ++
Sbjct: 88 EAAVQQDPKHMEAWQYL-GTTQAENEQELLAISALRRCLELKPDNQTALMALAVSF-TNE 145
Query: 232 KKLNEVEKRIEKAME---------RCKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYE 282
+ + + + +E I + +S E ++
Sbjct: 146 SLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFL 205
Query: 283 ELVKEEPRDFRP--YLCQGIIYTLLRKKDEAEKQFEK 317
V+ +P P G+++ L + D+A F
Sbjct: 206 AAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTA 242
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372 | Back alignment and structure |
|---|
Score = 49.3 bits (117), Expect = 8e-07
Identities = 24/190 (12%), Positives = 57/190 (30%), Gaps = 10/190 (5%)
Query: 145 NPNDIEALQTLMEVRIKSQ-KLVEAVDVIDRLIELEPNEFE-----WQLLKAQVQSYAGE 198
+ A+Q + + + + L ++ P+ +Q +
Sbjct: 155 TNGNQLAIQNDLLESLSKALNQPWPQRMQETLQKILPHRGALLTNFYQAHDYLLHGDDKS 214
Query: 199 SEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLR 258
A + EI++ P A + + EK++ +L
Sbjct: 215 LNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELN 274
Query: 259 DFKLL---IAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQF 315
+ ++ A +++ K E+ + + E + Y+ G +Y + EA +
Sbjct: 275 NLSIIYQIKAVSALVKGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAY 333
Query: 316 EKFRRLVPRN 325
L P
Sbjct: 334 LTAFNLRPGA 343
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372 | Back alignment and structure |
|---|
Score = 46.6 bits (110), Expect = 6e-06
Identities = 20/184 (10%), Positives = 53/184 (28%), Gaps = 19/184 (10%)
Query: 132 EEKEKEIEQHLAANPNDIEALQTLME-----VRIKSQKLVEAVDVIDRLIELEPNEFE-- 184
++ E P+ L + + + L A +++ +++ P
Sbjct: 177 PWPQRMQETLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYAR 236
Query: 185 ------WQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVE 238
+ +Q + A + I+ L + + A V+
Sbjct: 237 AEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAV------SALVK 290
Query: 239 KRIEKAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQ 298
+ +++ + +L+ ++ M+ + EA Y P Y +
Sbjct: 291 GKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANTLYWIE 350
Query: 299 GIIY 302
I+
Sbjct: 351 NGIF 354
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372 | Back alignment and structure |
|---|
Score = 41.2 bits (96), Expect = 3e-04
Identities = 21/117 (17%), Positives = 34/117 (29%), Gaps = 3/117 (2%)
Query: 98 IKPAIAAPVAAAATVESTNESTKDTTSAREDVSYEEKEKEIEQHLAANPNDIEALQTLME 157
P A A V+ S + E + + L N Q
Sbjct: 228 SSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT--LPELNNLSIIYQIKAV 285
Query: 158 VRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDP 214
+ K E+ I+ I+LE + + LL +V G + A + P
Sbjct: 286 SALVKGKTDESYQAINTGIDLEMSWLNYVLL-GKVYEMKGMNREAADAYLTAFNLRP 341
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 49.6 bits (118), Expect = 9e-07
Identities = 16/196 (8%), Positives = 45/196 (22%), Gaps = 9/196 (4%)
Query: 131 YEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKA 190
+ + Q P + A+ + + + + + V+ + L P++
Sbjct: 208 VQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETMQRLLPVLCQAHGLPPDQVVAIASNI 267
Query: 191 QVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK 250
+ + + + P +V A + +++ + +
Sbjct: 268 GGKQALETVQRLLPVLCQAHGLTPDQVVAIASHGGGKQAL--------ETVQRLLPVLCQ 319
Query: 251 EKKKSDLRDFKLLIAQIKVME-SKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKD 309
+ + + L V + P G L
Sbjct: 320 AHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQ 379
Query: 310 EAEKQFEKFRRLVPRN 325
+ L P
Sbjct: 380 RLLPVLCQAHGLTPDQ 395
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 47.7 bits (113), Expect = 4e-06
Identities = 17/197 (8%), Positives = 48/197 (24%), Gaps = 12/197 (6%)
Query: 131 YEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKA 190
+ + Q P+ + A+ + + + + + + V+ + L P++
Sbjct: 242 MQRLLPVLCQAHGLPPDQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHG 301
Query: 191 QVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK 250
+ + + + P +V A + +++ + +
Sbjct: 302 GGKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQAL--------ETVQRLLPVLCQ 353
Query: 251 --EKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKK 308
+ + +E L V + P G L
Sbjct: 354 AHGLTPDQVVAIASNGGGKQALE-TVQRLLPVLCQAHGLTPDQVVAIASNGGKQA-LETV 411
Query: 309 DEAEKQFEKFRRLVPRN 325
+ L P
Sbjct: 412 QRLLPVLCQAHGLTPDQ 428
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 45.0 bits (106), Expect = 3e-05
Identities = 17/197 (8%), Positives = 43/197 (21%), Gaps = 9/197 (4%)
Query: 131 YEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKA 190
+ + Q P+ + A+ + + + + + V+ + L P +
Sbjct: 411 VQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQTHGLTPAQVVAIASHD 470
Query: 191 QVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK 250
+ + + + P +V A + +++ + +
Sbjct: 471 GGKQALETVQQLLPVLCQAHGLTPDQVVAIASNIGGKQAL--------ATVQRLLPVLCQ 522
Query: 251 EKK-KSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKD 309
D K L V + P G L
Sbjct: 523 AHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQ 582
Query: 310 EAEKQFEKFRRLVPRNH 326
+ L
Sbjct: 583 RLLPVLCQAHGLTQVQV 599
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 45.0 bits (106), Expect = 3e-05
Identities = 17/195 (8%), Positives = 42/195 (21%), Gaps = 7/195 (3%)
Query: 131 YEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKA 190
+ + Q P+ + A+ + + + + + V+ + L P++
Sbjct: 513 VQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNG 572
Query: 191 QVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK 250
+ + + + ++V A + +E C+
Sbjct: 573 GGKQALETVQRLLPVLCQAHGLTQVQVVAIASNIGGKQ-------ALETVQRLLPVLCQA 625
Query: 251 EKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDE 310
K L V + P G L
Sbjct: 626 HGLTPAQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQR 685
Query: 311 AEKQFEKFRRLVPRN 325
+ L
Sbjct: 686 LLPVLCQAHGLTQEQ 700
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 44.6 bits (105), Expect = 4e-05
Identities = 19/196 (9%), Positives = 45/196 (22%), Gaps = 13/196 (6%)
Query: 131 YEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKA 190
+ + Q + A+ + + + + + + V+ + L P +
Sbjct: 581 VQRLLPVLCQAHGLTQVQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHD 640
Query: 191 QVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIE---KAMER 247
+ + + + P +V A + L V++ + +A
Sbjct: 641 GGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGK----QALETVQRLLPVLCQAHGL 696
Query: 248 CKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRK 307
+ K L V + P G L
Sbjct: 697 ------TQEQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALET 750
Query: 308 KDEAEKQFEKFRRLVP 323
+ L P
Sbjct: 751 VQRLLPVLCQAHGLTP 766
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 43.5 bits (102), Expect = 8e-05
Identities = 18/186 (9%), Positives = 43/186 (23%), Gaps = 9/186 (4%)
Query: 142 LAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEA 201
L P + A+ + + + + + V+ + L P + + +
Sbjct: 185 LNLTPAQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETMQR 244
Query: 202 AIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKK-KSDLRDF 260
+ + P +V A + + L + +++ + + D
Sbjct: 245 LLPVLCQAHGLPPDQVVAIASNIGGK----QAL----ETVQRLLPVLCQAHGLTPDQVVA 296
Query: 261 KLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRR 320
K L V + P L +
Sbjct: 297 IASHGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQAHG 356
Query: 321 LVPRNH 326
L P
Sbjct: 357 LTPDQV 362
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 43.1 bits (101), Expect = 1e-04
Identities = 43/312 (13%), Positives = 77/312 (24%), Gaps = 19/312 (6%)
Query: 22 RPSFPKSISFISLRTPPSSSPFKFSCIRASSSPASQQNP-KPSLLRTLTPLSSPLIKITS 80
RP K P +SP +R QQ KP + T+ L+
Sbjct: 27 RPPRAKPAPRRRAAQPSDASPAAQVDLRTLGYSQQQQEKIKPKVRSTVAQHHEALVGHGF 86
Query: 81 VTVAAAALLFMRLPFHSIKPAIAAPVAAAATVESTNESTKDTTSAREDVSYEEKEKEIEQ 140
AL + P A+ A E+T+E E
Sbjct: 87 THAHIVALS--QHPAALGTVAVTYQHIITALPEATHEDIVGVGKQWSGARALEALLTDAG 144
Query: 141 HLAANPNDIEALQTLMEVRIKSQKLVEAVD-----VIDRLIELEPNEFEWQLLKAQVQSY 195
L P ++ Q + + +EAV + + L P + +
Sbjct: 145 ELRGPPLQLDTGQLVKIAKRGGVTAMEAVHASRNALTGAPLNLTPAQVVAIASNNGGKQA 204
Query: 196 AGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK--EKK 253
+ + + P +V A + L + +++ + +
Sbjct: 205 LETVQRLLPVLCQAHGLTPAQVVAIASHDGGK----QAL----ETMQRLLPVLCQAHGLP 256
Query: 254 KSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEK 313
+ I + +E L V + P G L
Sbjct: 257 PDQVVAIASNIGGKQALE-TVQRLLPVLCQAHGLTPDQVVAIASHGGGKQALETVQRLLP 315
Query: 314 QFEKFRRLVPRN 325
+ L P
Sbjct: 316 VLCQAHGLTPDQ 327
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 40.8 bits (95), Expect = 6e-04
Identities = 16/196 (8%), Positives = 42/196 (21%), Gaps = 9/196 (4%)
Query: 131 YEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKA 190
+ + Q P + A+ + + + + + V+ + L P++
Sbjct: 615 VQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNG 674
Query: 191 QVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK 250
+ + + + +V A + L +++ + +
Sbjct: 675 GGKQALETVQRLLPVLCQAHGLTQEQVVAIASNNGGK----QALE----TVQRLLPVLCQ 726
Query: 251 EKK-KSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKD 309
D K L V + P L
Sbjct: 727 AHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPAQVVAIASNIGGKQALETVQ 786
Query: 310 EAEKQFEKFRRLVPRN 325
+ L
Sbjct: 787 RLLPVLCQDHGLTLAQ 802
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 | Back alignment and structure |
|---|
Score = 46.1 bits (109), Expect = 2e-06
Identities = 21/160 (13%), Positives = 35/160 (21%), Gaps = 41/160 (25%)
Query: 164 KLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGL 223
L I L E+ + E A Q +G E A F+ + D + GL
Sbjct: 2 PLGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGL 61
Query: 224 VMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEE 283
++ A+ Y
Sbjct: 62 GACRQ-----------------------------------------AMGQYDLAIHSYSY 80
Query: 284 LVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVP 323
+ + R + EAE + L+
Sbjct: 81 GAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIA 120
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 47.3 bits (113), Expect = 2e-06
Identities = 24/208 (11%), Positives = 67/208 (32%), Gaps = 20/208 (9%)
Query: 131 YEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFE-W---- 185
Y + IE L ++P + A E+ + +A + + + ++P+ E
Sbjct: 24 YRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYG 83
Query: 186 QLLKAQVQSYAGESEAAIKGFEEILRKD--PLRVEAYHGLVMAYDGSDKKLNEVEKRIEK 243
L ++ ++ F++ L P A + + E +++
Sbjct: 84 WFLCGRLNRP----AESMAYFDKALADPTYPTPYIANLNKGICSAKQ-GQFGLAEAYLKR 138
Query: 244 AMERCKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYT 303
++ + +A+ K++ + +A +++ L + +
Sbjct: 139 SLAA------QPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDL--LLGWK 190
Query: 304 LLRKKDEAEKQFEKFRRLVPRNHPYREY 331
+ + A+ +E +L E
Sbjct: 191 IAKALGNAQAAYEYEAQLQANFPYSEEL 218
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 46.9 bits (112), Expect = 2e-06
Identities = 25/198 (12%), Positives = 58/198 (29%), Gaps = 34/198 (17%)
Query: 145 NPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIK 204
L ++ Q +A I+ ++ +P L++A++ Y ++ A +
Sbjct: 4 ANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQE 63
Query: 205 GFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAME---------------RCK 249
F + L P E + G + E +KA+ C
Sbjct: 64 SFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICS 123
Query: 250 KEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKD 309
++ + A + + +P+ + L +
Sbjct: 124 AKQGQFG-------------------LAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLG 164
Query: 310 EAEKQFEKFRRLVPRNHP 327
+A+ F+K++ V
Sbjct: 165 DADYYFKKYQSRVEVLQA 182
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 44.4 bits (105), Expect = 5e-06
Identities = 15/84 (17%), Positives = 29/84 (34%)
Query: 131 YEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKA 190
E E P EA ++L + +++K A+ ++ L+P + A
Sbjct: 33 LAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALA 92
Query: 191 QVQSYAGESEAAIKGFEEILRKDP 214
+ + AA+ L P
Sbjct: 93 VSHTNEHNANAALASLRAWLLSQP 116
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 42.4 bits (100), Expect = 2e-05
Identities = 20/108 (18%), Positives = 34/108 (31%), Gaps = 11/108 (10%)
Query: 145 NP-NDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFE-WQLLKAQVQSYAGESEAA 202
NP E +K L EA + + + EP E W+ L Q+ + A
Sbjct: 12 NPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSL-GLTQAENEKDGLA 70
Query: 203 IKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK 250
I DP + + L +++ E A+ +
Sbjct: 71 IIALNHARMLDPKDIAVHAALAVSHTN--------EHNANAALASLRA 110
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 | Back alignment and structure |
|---|
Score = 44.8 bits (107), Expect = 1e-05
Identities = 39/208 (18%), Positives = 72/208 (34%), Gaps = 39/208 (18%)
Query: 131 YEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFE------ 184
Y+ E+ L NP D EAL L ++K + A++ L+ P
Sbjct: 21 YDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLS 80
Query: 185 -----WQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYH--GLVMAYDGSDKKLNEV 237
+ G E A+ ++ R +P + GLV A G + ++
Sbjct: 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLG---ERDKA 137
Query: 238 EKRIEKAMERCKKEKKKSDLRDF--------KLLIAQIKVMESKHSEALRVYEELVKEEP 289
E +++A+ L D +L ++ + EAL Y + +++ P
Sbjct: 138 EASLKQALA----------LEDTPEIRSALAELYLSM-----GRLDEALAQYAKALEQAP 182
Query: 290 RDFRPYLCQGIIYTLLRKKDEAEKQFEK 317
+D + L K +EA +
Sbjct: 183 KDLDLRVRYASALLLKGKAEEAARAAAL 210
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 | Back alignment and structure |
|---|
Score = 40.6 bits (96), Expect = 3e-04
Identities = 28/154 (18%), Positives = 61/154 (39%), Gaps = 30/154 (19%)
Query: 164 KLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGL 223
+ A+ + +R ++ P + E A+ Q G A++ + ++ + P + Y L
Sbjct: 20 RYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVL 79
Query: 224 VMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEE 283
AY + + E ++ K + +AL V ++
Sbjct: 80 SEAY-----------VALYRQAEDRERGKGYLE-------------------QALSVLKD 109
Query: 284 LVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEK 317
+ PR +L +G++Y LL ++D+AE ++
Sbjct: 110 AERVNPRYAPLHLQRGLVYALLGERDKAEASLKQ 143
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307 | Back alignment and structure |
|---|
Score = 41.0 bits (96), Expect = 4e-04
Identities = 16/138 (11%), Positives = 44/138 (31%), Gaps = 10/138 (7%)
Query: 200 EAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRD 259
E A + E D A + L++ ++A + E++ +
Sbjct: 100 EKASVMYVENGTPDTA-AMALDRAGKLME--PLDLSKAVHLYQQAAAVFENEERLRQAAE 156
Query: 260 FKLLIAQIKVMESKHSEALRVYEEL------VKEEPRDFRPYLCQGIIYTLLRKKDEAEK 313
+++ V + K EA ++ ++ P ++ + Q ++ A+K
Sbjct: 157 LIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQK 216
Query: 314 QFEKFRRLVPRNHPYREY 331
+ + + +
Sbjct: 217 CVRESYSIPGFSGS-EDC 233
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 39.7 bits (94), Expect = 4e-04
Identities = 21/176 (11%), Positives = 61/176 (34%), Gaps = 10/176 (5%)
Query: 144 ANPNDIEALQTLMEVRIKSQ-KLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAA 202
N + + + + +AV +++++ + + + + L G +
Sbjct: 2 GNDDIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRG 61
Query: 203 IKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKE-KKKSDLRDFK 261
+ E L P V+ L + Y ++ ++ + A+ K + + +
Sbjct: 62 TELLERSLADAPDNVKVATVLGLTY----VQV----QKYDLAVPLLIKVAEANPINFNVR 113
Query: 262 LLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEK 317
+ + EA+ ++ + P + + + Y + + +EA F+K
Sbjct: 114 FRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKK 169
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 Length = 292 | Back alignment and structure |
|---|
Score = 40.8 bits (95), Expect = 4e-04
Identities = 16/97 (16%), Positives = 37/97 (38%), Gaps = 7/97 (7%)
Query: 242 EKAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRP------- 294
E A E +++ + + A +K ++ ++ EA +Y +L+K +
Sbjct: 142 ELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDY 201
Query: 295 YLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHPYREY 331
+L +G+ A + ++ + P RE
Sbjct: 202 FLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRES 238
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} Length = 176 | Back alignment and structure |
|---|
Score = 39.2 bits (91), Expect = 6e-04
Identities = 14/117 (11%), Positives = 37/117 (31%), Gaps = 8/117 (6%)
Query: 131 YEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKA 190
+ + I+ + + + +++++ A +++ + + L+
Sbjct: 22 HAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAK 81
Query: 191 QVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMER 247
+K E+ L +P E L + Y R E+A+E
Sbjct: 82 LELHQQAAESPELKRLEQELAANPDNFELACELAVQY--------NQVGRDEEALEL 130
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 355 | |||
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.95 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.95 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.95 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.94 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.94 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.93 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.93 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.93 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.93 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.93 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.93 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.93 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 99.93 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.92 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.92 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.92 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.92 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.92 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.92 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.92 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.92 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.92 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.91 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.91 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.91 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.91 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.9 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.9 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.9 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.9 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.9 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.9 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.9 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 99.9 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.9 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.89 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.89 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.89 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.88 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.88 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.88 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.88 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.87 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.87 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.87 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.87 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.87 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.87 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.87 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.86 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.86 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.86 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.86 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.85 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.85 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.85 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.85 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.85 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.84 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.83 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.83 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.83 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.83 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.83 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.83 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.82 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.82 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.82 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.82 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.81 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.81 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.81 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 99.8 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.8 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.8 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.8 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.8 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.8 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.79 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 99.79 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 99.79 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.79 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.79 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.78 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 99.78 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.77 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 99.77 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 99.76 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.76 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.76 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.75 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.75 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 99.75 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.75 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 99.75 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 99.74 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.74 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.73 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 99.72 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 99.72 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.72 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.72 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 99.71 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.71 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.71 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 99.71 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 99.7 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 99.7 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.7 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 99.7 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 99.69 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 99.69 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.67 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 99.67 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 99.66 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 99.66 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 99.66 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 99.66 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.65 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 99.65 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 99.65 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 99.65 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 99.65 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 99.64 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 99.64 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.64 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 99.64 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 99.63 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 99.63 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 99.62 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.62 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 99.61 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 99.61 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 99.61 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.61 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 99.6 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 99.6 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.6 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 99.59 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 99.59 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 99.58 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 99.58 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 99.58 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 99.57 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.57 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.56 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 99.55 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 99.55 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 99.55 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 99.55 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 99.54 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 99.54 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 99.53 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 99.53 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 99.53 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.53 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 99.53 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 99.52 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 99.52 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.52 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 99.52 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 99.52 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 99.51 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 99.51 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 99.5 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 99.5 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 99.49 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 99.49 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.48 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 99.48 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 99.48 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 99.48 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 99.47 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 99.47 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 99.47 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 99.47 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 99.46 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 99.45 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 99.45 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 99.44 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 99.44 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 99.43 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 99.43 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.41 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 99.39 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 99.36 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 99.36 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.35 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.33 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 99.32 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.31 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.31 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 99.25 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 99.24 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 99.23 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 99.21 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 99.17 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 99.17 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 99.16 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 99.12 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 99.05 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.04 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 99.02 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 99.01 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 98.99 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 98.97 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 98.96 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 98.95 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 98.94 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.94 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 98.92 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 98.87 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 98.83 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 98.79 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.79 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 98.75 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 98.73 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 98.7 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 98.65 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 98.64 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 98.64 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 98.55 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 98.36 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 98.29 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 98.28 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 98.13 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 98.07 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 98.01 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 97.97 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 97.81 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 97.71 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 97.69 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 97.62 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 97.49 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 97.13 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 96.9 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 96.86 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 96.82 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 96.81 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.73 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 96.71 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 96.63 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 96.49 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.47 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 96.45 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 96.38 | |
| 3kae_A | 242 | CDC27, possible protein of nuclear scaffold; tetra | 96.37 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 96.32 | |
| 3kae_A | 242 | CDC27, possible protein of nuclear scaffold; tetra | 96.29 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 95.91 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 95.87 | |
| 4b4t_S | 523 | RPN3, 26S proteasome regulatory subunit RPN3; hydr | 95.83 | |
| 1ya0_A | 497 | SMG-7 transcript variant 2; alpha-helical repeat, | 95.71 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 95.5 | |
| 1ya0_A | 497 | SMG-7 transcript variant 2; alpha-helical repeat, | 95.26 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 95.18 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 95.16 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 94.55 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 94.54 | |
| 4b4t_S | 523 | RPN3, 26S proteasome regulatory subunit RPN3; hydr | 94.33 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 91.01 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 89.85 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 89.33 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 87.53 | |
| 3esl_A | 202 | Checkpoint serine/threonine-protein kinase BUB1; m | 87.43 | |
| 4gq2_M | 950 | Nucleoporin NUP120; beta propeller alpha helical, | 83.98 | |
| 4a1g_A | 152 | Mitotic checkpoint serine/threonine-protein kinas; | 83.98 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 82.45 | |
| 4aez_C | 223 | MAD3, mitotic spindle checkpoint component MAD3; c | 82.13 | |
| 3esl_A | 202 | Checkpoint serine/threonine-protein kinase BUB1; m | 81.66 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 81.32 | |
| 4gq2_M | 950 | Nucleoporin NUP120; beta propeller alpha helical, | 81.0 | |
| 2wvi_A | 164 | Mitotic checkpoint serine/threonine-protein kinase | 80.79 |
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.95 E-value=5e-27 Score=190.94 Aligned_cols=185 Identities=19% Similarity=0.174 Sum_probs=153.4
Q ss_pred hccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHc---------
Q 040440 126 REDVSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYA--------- 196 (355)
Q Consensus 126 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~--------- 196 (355)
+..+++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++.+|++..++..+|.++...
T Consensus 16 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~ 95 (217)
T 2pl2_A 16 YALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRER 95 (217)
T ss_dssp HHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhcc
Confidence 34459999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred --CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHHHccC
Q 040440 197 --GESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQIKVMESK 273 (355)
Q Consensus 197 --g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~~~g~ 273 (355)
|++++|+..|+++++.+|++..++..+|.++...|+ +++|+..+++ .... ++..++..+|.+|...|+
T Consensus 96 ~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~--------~~~A~~~~~~al~~~-~~~~~~~~la~~~~~~g~ 166 (217)
T 2pl2_A 96 GKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGE--------RDKAEASLKQALALE-DTPEIRSALAELYLSMGR 166 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTC
T ss_pred cccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCC--------hHHHHHHHHHHHhcc-cchHHHHHHHHHHHHcCC
Confidence 999999999999999999999999999999999999 6666666655 3334 778889999999999999
Q ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 040440 274 HSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFR 319 (355)
Q Consensus 274 ~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 319 (355)
+++|+..|+++++.+|++..++..+|.++...|++++|+..|+++-
T Consensus 167 ~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 167 LDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999988753
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.95 E-value=8.7e-26 Score=178.70 Aligned_cols=171 Identities=19% Similarity=0.206 Sum_probs=161.3
Q ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 040440 147 NDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMA 226 (355)
Q Consensus 147 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 226 (355)
++..+|+.+|.+|...|++++|+..|+++++.+|++..++..+|.++...|++++|+..+++++...|++..++..++.+
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSA 82 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence 56889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhccCchHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc
Q 040440 227 YDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLL 305 (355)
Q Consensus 227 ~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~ 305 (355)
+...++ ++++++.+.+ ....|.+..++..+|.+|...|++++|++.|+++++.+|.+..+|+.+|.+|..+
T Consensus 83 ~~~~~~--------~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~ 154 (184)
T 3vtx_A 83 NFMIDE--------KQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGK 154 (184)
T ss_dssp HHHTTC--------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHcCC--------HHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHC
Confidence 999999 6666666666 4557888999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCC
Q 040440 306 RKKDEAEKQFEKFRRLVPRN 325 (355)
Q Consensus 306 g~~~~A~~~~~~~l~~~p~~ 325 (355)
|++++|+.+|+++++++|++
T Consensus 155 g~~~~A~~~~~~al~~~p~~ 174 (184)
T 3vtx_A 155 GLRDEAVKYFKKALEKEEKK 174 (184)
T ss_dssp TCHHHHHHHHHHHHHTTHHH
T ss_pred CCHHHHHHHHHHHHhCCccC
Confidence 99999999999999999975
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.95 E-value=2e-25 Score=181.49 Aligned_cols=174 Identities=16% Similarity=0.147 Sum_probs=163.2
Q ss_pred CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 040440 146 PNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVM 225 (355)
Q Consensus 146 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 225 (355)
|+++.++..+|.++...|++++|+..|+++++.+|++..+++.+|.++...|++++|+..|+++++.+|++..++..+|.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~ 81 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSE 81 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 67888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcc-----------CchHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChH
Q 040440 226 AYDGS-----------DKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFR 293 (355)
Q Consensus 226 ~~~~~-----------~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~ 293 (355)
++... |+ +++|+..+++ ....|++..++..+|.+|...|++++|+..|+++++.+ +++.
T Consensus 82 ~~~~~~~~~~~~~~~~g~--------~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~ 152 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGY--------LEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPE 152 (217)
T ss_dssp HHHHHHHTCSSHHHHHHH--------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHH
T ss_pred HHHHhhhhhhhhcccccC--------HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchH
Confidence 99998 77 7777777766 55589999999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhH
Q 040440 294 PYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHPY 328 (355)
Q Consensus 294 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 328 (355)
+++.+|.++...|++++|+..|+++++++|++...
T Consensus 153 ~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~ 187 (217)
T 2pl2_A 153 IRSALAELYLSMGRLDEALAQYAKALEQAPKDLDL 187 (217)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHH
Confidence 99999999999999999999999999999998655
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.94 E-value=3.5e-25 Score=194.26 Aligned_cols=218 Identities=11% Similarity=0.061 Sum_probs=188.6
Q ss_pred ccccccccchhhhhhhhhhhcc-CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccC-HHHHHHHHHHHHHcCCCchH
Q 040440 107 AAAATVESTNESTKDTTSARED-VSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQK-LVEAVDVIDRLIELEPNEFE 184 (355)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~~~~~~~~~~~ 184 (355)
...|....++..++.. +.. +++++|+..++++++.+|++..+|+.+|.++...|+ +++|+..|+++++++|++..
T Consensus 91 ~~~p~~~~a~~~lg~~---~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~ 167 (382)
T 2h6f_A 91 IYSDKFRDVYDYFRAV---LQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQ 167 (382)
T ss_dssp CCCHHHHHHHHHHHHH---HHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHH
T ss_pred hCChhhHHHHHHHHHH---HHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHH
Confidence 3444444444444444 444 489999999999999999999999999999999997 99999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hccCCchHHHHHH
Q 040440 185 WQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLL 263 (355)
Q Consensus 185 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~ 263 (355)
+|+.+|.++...|++++|+..|+++++++|++..+|+.+|.++...|+ +++|+..+++ +..+|.+..+|..
T Consensus 168 a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~--------~~eAl~~~~~al~l~P~~~~a~~~ 239 (382)
T 2h6f_A 168 VWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKL--------WDNELQYVDQLLKEDVRNNSVWNQ 239 (382)
T ss_dssp HHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC--------CTTHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCC--------hHHHHHHHHHHHHhCCCCHHHHHH
Confidence 999999999999999999999999999999999999999999999999 6666666666 4558999999999
Q ss_pred HHHHHHH-ccCHHHH-----HHHHHHHHHhCCCChHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCChhHHHHHHHH
Q 040440 264 IAQIKVM-ESKHSEA-----LRVYEELVKEEPRDFRPYLCQGIIYTLLR--KKDEAEKQFEKFRRLVPRNHPYREYFVDN 335 (355)
Q Consensus 264 la~~~~~-~g~~~~A-----~~~~~~~l~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~l~~~p~~~~~~~~~~~~ 335 (355)
+|.++.. .|.+++| +.+|++++.++|++..+|++++.++...| ++++|++.++++ +.+|++......+..+
T Consensus 240 lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~ 318 (382)
T 2h6f_A 240 RYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDI 318 (382)
T ss_dssp HHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHH
T ss_pred HHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHH
Confidence 9999999 5665777 59999999999999999999999999988 699999999988 8888875554444433
Q ss_pred H
Q 040440 336 M 336 (355)
Q Consensus 336 ~ 336 (355)
.
T Consensus 319 ~ 319 (382)
T 2h6f_A 319 Y 319 (382)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.94 E-value=1.8e-24 Score=178.55 Aligned_cols=195 Identities=14% Similarity=0.160 Sum_probs=177.7
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHH
Q 040440 127 EDVSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGF 206 (355)
Q Consensus 127 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 206 (355)
..+++++|+..++++++.+|++..++..+|.++...|++++|+..++++++.+|.+..++..+|.++...|++++|+..+
T Consensus 35 ~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 114 (243)
T 2q7f_A 35 EFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMF 114 (243)
T ss_dssp -------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHH
Confidence 33589999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 040440 207 EEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELV 285 (355)
Q Consensus 207 ~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 285 (355)
+++++..|++..++..++.++...|+ +++|+..+++ ....+.+..++..+|.++...|++++|+..+++++
T Consensus 115 ~~~~~~~~~~~~~~~~~a~~~~~~~~--------~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 186 (243)
T 2q7f_A 115 EKALRAGMENGDLFYMLGTVLVKLEQ--------PKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVT 186 (243)
T ss_dssp HHHHHHTCCSHHHHHHHHHHHHHTSC--------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHhcc--------HHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999999999999999999999999 6777776666 44567788899999999999999999999999999
Q ss_pred HhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHH
Q 040440 286 KEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHPYR 329 (355)
Q Consensus 286 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~ 329 (355)
+..|++..++..+|.++...|++++|+.+++++++++|++....
T Consensus 187 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 230 (243)
T 2q7f_A 187 EQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLAL 230 (243)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHH
T ss_pred HhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHH
Confidence 99999999999999999999999999999999999999885543
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.93 E-value=4.1e-24 Score=189.24 Aligned_cols=208 Identities=15% Similarity=0.120 Sum_probs=144.9
Q ss_pred ccccccchhhhhhhhhhhccC-CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHH
Q 040440 109 AATVESTNESTKDTTSAREDV-SYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQL 187 (355)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 187 (355)
.|........++.. +... ++++|++.|+++++.+|++..+|..+|.++...|++++|+..|+++++.+|++..++.
T Consensus 131 ~p~~~~~~~~l~~~---~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 207 (388)
T 1w3b_A 131 NPDLYCVRSDLGNL---LKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYI 207 (388)
T ss_dssp CTTCTHHHHHHHHH---HHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CCCcHHHHHHHHHH---HHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHH
Confidence 34433334444433 4433 7777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHHH
Q 040440 188 LKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQ 266 (355)
Q Consensus 188 ~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~ 266 (355)
.+|.++...|++++|+..|++++..+|++..++..++.++...|+ +++|++.+++ ....|....++..+|.
T Consensus 208 ~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~--------~~~A~~~~~~al~~~p~~~~~~~~l~~ 279 (388)
T 1w3b_A 208 NLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGL--------IDLAIDTYRRAIELQPHFPDAYCNLAN 279 (388)
T ss_dssp HHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHTCSSCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHhhCCCCHHHHHHHHH
Confidence 777777777777777777777777777777777777777777777 5555555555 3445666667777777
Q ss_pred HHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChh
Q 040440 267 IKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHP 327 (355)
Q Consensus 267 ~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 327 (355)
++...|++++|+..|+++++.+|.+..++..+|.++...|++++|+..|++++++.|++..
T Consensus 280 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 340 (388)
T 1w3b_A 280 ALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAA 340 (388)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHH
T ss_pred HHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHH
Confidence 7777777777777777777777777777777777777777777777777777777776543
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.93 E-value=3.7e-24 Score=189.56 Aligned_cols=210 Identities=18% Similarity=0.112 Sum_probs=190.8
Q ss_pred cccccccchhhhhhhhhhhccC-CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHH
Q 040440 108 AAATVESTNESTKDTTSAREDV-SYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQ 186 (355)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 186 (355)
..|....++..++.. +... ++++|+..|+++++.+|++..++..+|.++...|++++|+..|++++..+|++..++
T Consensus 164 ~~p~~~~~~~~l~~~---~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 240 (388)
T 1w3b_A 164 TQPNFAVAWSNLGCV---FNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVH 240 (388)
T ss_dssp HCTTCHHHHHHHHHH---HHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHH
T ss_pred hCCCCHHHHHHHHHH---HHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHH
Confidence 345444455555544 5545 999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHH
Q 040440 187 LLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIA 265 (355)
Q Consensus 187 ~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la 265 (355)
..+|.++...|++++|+..|+++++.+|+++.++..++.++...|+ +++|++.+++ ....|.+...+..+|
T Consensus 241 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~--------~~~A~~~~~~al~~~p~~~~~~~~l~ 312 (388)
T 1w3b_A 241 GNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGS--------VAEAEDCYNTALRLCPTHADSLNNLA 312 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSC--------HHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHhhCcccHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999 6666666666 445788899999999
Q ss_pred HHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhH
Q 040440 266 QIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHPY 328 (355)
Q Consensus 266 ~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 328 (355)
.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+..|+++++++|++...
T Consensus 313 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a 375 (388)
T 1w3b_A 313 NIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADA 375 (388)
T ss_dssp HHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Confidence 999999999999999999999999999999999999999999999999999999999987554
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.6e-24 Score=190.29 Aligned_cols=198 Identities=15% Similarity=0.171 Sum_probs=172.3
Q ss_pred hccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHH
Q 040440 126 REDVSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKG 205 (355)
Q Consensus 126 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 205 (355)
+..+++++|+..|+++++.+|++..++..+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+..
T Consensus 76 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 155 (365)
T 4eqf_A 76 LKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEA 155 (365)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHH
Confidence 44559999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCHHHHHHH----------HHHHhccCchHHHHHHHHHHHHHHHHh-hccCCc--hHHHHHHHHHHHHHcc
Q 040440 206 FEEILRKDPLRVEAYHGL----------VMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSD--LRDFKLLIAQIKVMES 272 (355)
Q Consensus 206 ~~~~~~~~p~~~~~~~~l----------~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~--~~~~~~~la~~~~~~g 272 (355)
|+++++..|++...+..+ +.++...|+ +++|+..+++ ....|. +..++..+|.+|...|
T Consensus 156 ~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~--------~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g 227 (365)
T 4eqf_A 156 LKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSV--------LEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSG 227 (365)
T ss_dssp HHHHHHHCHHHHCC-------------------CCHH--------HHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhh--------HHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCC
Confidence 999999998776665544 888888888 6666666666 344566 7889999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHH
Q 040440 273 KHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHPYREY 331 (355)
Q Consensus 273 ~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~ 331 (355)
++++|+.+|+++++.+|++..+|..+|.++...|++++|+.+|+++++++|++......
T Consensus 228 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 286 (365)
T 4eqf_A 228 EFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYN 286 (365)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHH
Confidence 99999999999999999999999999999999999999999999999999988554333
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.1e-23 Score=181.77 Aligned_cols=219 Identities=13% Similarity=-0.012 Sum_probs=190.6
Q ss_pred cccccccchhhhhhhhhhhccC-CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHH
Q 040440 108 AAATVESTNESTKDTTSAREDV-SYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQ 186 (355)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 186 (355)
..|.....+..++.. .+..+ ++++|+..++++++.+|++..++..+|.++...|++++|+..++++++..|++...+
T Consensus 85 ~~~~~~~~~~~l~~~--~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 162 (330)
T 3hym_B 85 LYPSNPVSWFAVGCY--YLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPM 162 (330)
T ss_dssp HCTTSTHHHHHHHHH--HHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHH
T ss_pred hCcCCHHHHHHHHHH--HHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHH
Confidence 344444445555443 34455 899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccC---CchHHHHHH
Q 040440 187 LLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKK---SDLRDFKLL 263 (355)
Q Consensus 187 ~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~---~~~~~~~~~ 263 (355)
..+|.++...|++++|+..++++++.+|++..++..+|.++...|+ ++++...++++++........ +....++..
T Consensus 163 ~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 241 (330)
T 3hym_B 163 LYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGE-WKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNN 241 (330)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccc-HHHHHHHHHHHHHHhhhccccccccHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998 666666777776665542222 556789999
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHH
Q 040440 264 IAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHPYR 329 (355)
Q Consensus 264 la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~ 329 (355)
+|.+|...|++++|+.+|+++++.+|++..++..+|.++...|++++|..+|+++++++|++....
T Consensus 242 la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 307 (330)
T 3hym_B 242 LGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSV 307 (330)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHH
Confidence 999999999999999999999999999999999999999999999999999999999999886553
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.93 E-value=1.4e-23 Score=174.35 Aligned_cols=195 Identities=16% Similarity=0.120 Sum_probs=181.7
Q ss_pred cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHH
Q 040440 128 DVSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFE 207 (355)
Q Consensus 128 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 207 (355)
.+++++|+..++++++.+|++..++..+|.++...|++++|+..++++++.+|.+..++..+|.++...|++++|+++|+
T Consensus 50 ~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 129 (252)
T 2ho1_A 50 RGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLL 129 (252)
T ss_dssp TTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 35889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHh--hCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 040440 208 EILR--KDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQIKVMESKHSEALRVYEEL 284 (355)
Q Consensus 208 ~~~~--~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 284 (355)
++++ ..|.+..++..++.++...|+ +++|+..+++ ....+....++..+|.++...|++++|+..++++
T Consensus 130 ~~~~~~~~~~~~~~~~~la~~~~~~g~--------~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 201 (252)
T 2ho1_A 130 EASQDTLYPERSRVFENLGLVSLQMKK--------PAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLF 201 (252)
T ss_dssp HHTTCTTCTTHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHhCccCcccHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999 888899999999999999999 6677766666 4456778899999999999999999999999999
Q ss_pred HHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHH
Q 040440 285 VKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHPYRE 330 (355)
Q Consensus 285 l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~ 330 (355)
++..|.+...+..++.++...|++++|..+++++++..|++.....
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 247 (252)
T 2ho1_A 202 AQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQE 247 (252)
T ss_dssp HTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHHH
T ss_pred HHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHH
Confidence 9999999999999999999999999999999999999999866543
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=6.4e-24 Score=176.73 Aligned_cols=194 Identities=11% Similarity=0.088 Sum_probs=172.4
Q ss_pred hccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCc-------hHHHHHHHHHHHHcCC
Q 040440 126 REDVSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNE-------FEWQLLKAQVQSYAGE 198 (355)
Q Consensus 126 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-------~~~~~~la~~~~~~g~ 198 (355)
+..+++++|+..++++++.+ .+..++..+|.++...|++++|+..++++++.+|+. ..++..+|.++...|+
T Consensus 16 ~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 94 (258)
T 3uq3_A 16 YKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGD 94 (258)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHccc
Confidence 34459999999999999999 999999999999999999999999999999988765 6889999999999999
Q ss_pred HHHHHHHHHHHHh--------------------------hCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-h
Q 040440 199 SEAAIKGFEEILR--------------------------KDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-E 251 (355)
Q Consensus 199 ~~~A~~~~~~~~~--------------------------~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~ 251 (355)
+++|+..|+++++ .+|.+..++..+|.++...|+ +++|+..+++ .
T Consensus 95 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~A~~~~~~a~ 166 (258)
T 3uq3_A 95 LKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSD--------WPNAVKAYTEMI 166 (258)
T ss_dssp HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcC--------HHHHHHHHHHHH
Confidence 9999999999999 566677888899999999998 6666666666 4
Q ss_pred ccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCC
Q 040440 252 KKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLV------PRN 325 (355)
Q Consensus 252 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~------p~~ 325 (355)
...+.+..++..+|.++...|++++|+.+|+++++.+|++..++..+|.++...|++++|..+|++++++. |++
T Consensus 167 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~ 246 (258)
T 3uq3_A 167 KRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSA 246 (258)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTH
T ss_pred hcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCch
Confidence 45677888999999999999999999999999999999999999999999999999999999999999998 765
Q ss_pred hhH
Q 040440 326 HPY 328 (355)
Q Consensus 326 ~~~ 328 (355)
...
T Consensus 247 ~~~ 249 (258)
T 3uq3_A 247 REI 249 (258)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.93 E-value=5e-23 Score=179.58 Aligned_cols=198 Identities=13% Similarity=0.110 Sum_probs=183.7
Q ss_pred hccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHH
Q 040440 126 REDVSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKG 205 (355)
Q Consensus 126 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 205 (355)
+..+++++|+..|+++++.+|++..++..+|.++...|++++|+..++++++.+|++..++..+|.++...|++++|+..
T Consensus 14 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 93 (359)
T 3ieg_A 14 LAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDD 93 (359)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHH
Confidence 44569999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCC---CCHHHHHHH------------HHHHhccCchHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHH
Q 040440 206 FEEILRKDP---LRVEAYHGL------------VMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQIKV 269 (355)
Q Consensus 206 ~~~~~~~~p---~~~~~~~~l------------~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~ 269 (355)
|+++++.+| ++...+..+ +.++...|+ +++|++.+++ ....|.+..++..+|.++.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--------~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (359)
T 3ieg_A 94 FKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGAD--------YTAAITFLDKILEVCVWDAELRELRAECFI 165 (359)
T ss_dssp HHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccC--------HHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 999999999 888888777 688888888 7777777777 4567888999999999999
Q ss_pred HccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHH
Q 040440 270 MESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHPYREY 331 (355)
Q Consensus 270 ~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~ 331 (355)
..|++++|+..++++++..|.+..++..+|.++...|++++|+..|+++++..|++......
T Consensus 166 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 227 (359)
T 3ieg_A 166 KEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAH 227 (359)
T ss_dssp HTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998664433
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.93 E-value=4.2e-23 Score=192.93 Aligned_cols=204 Identities=9% Similarity=-0.044 Sum_probs=182.8
Q ss_pred hccC-CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHH
Q 040440 126 REDV-SYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIK 204 (355)
Q Consensus 126 ~~~~-~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 204 (355)
|... ++++|++.|+++++.+|++..+|..++.+|...|++++|++.|+++++..|++...+..+|.+|...|++++|++
T Consensus 383 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 462 (597)
T 2xpi_A 383 YLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANE 462 (597)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHH
Confidence 4444 999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCch-HHHHHHHHHHHHHccCHHHHHHHHHH
Q 040440 205 GFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDL-RDFKLLIAQIKVMESKHSEALRVYEE 283 (355)
Q Consensus 205 ~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~ 283 (355)
+|+++++..|+++..+..++.++...|+ +++|...++++++...+....+.. ..++..+|.+|...|++++|++.|++
T Consensus 463 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 541 (597)
T 2xpi_A 463 YLQSSYALFQYDPLLLNELGVVAFNKSD-MQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQ 541 (597)
T ss_dssp HHHHHHHHCCCCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHhCCCChHHHHHHHHHHHHhCC-HHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 9999999999999999999999999998 666666666666655544445654 78999999999999999999999999
Q ss_pred HHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHH
Q 040440 284 LVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHPYRE 330 (355)
Q Consensus 284 ~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~ 330 (355)
+++.+|++..+|..+|.+|...|++++|.++|+++++++|++.....
T Consensus 542 ~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~ 588 (597)
T 2xpi_A 542 GLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASD 588 (597)
T ss_dssp HHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHH
Confidence 99999999999999999999999999999999999999999865533
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.92 E-value=5.6e-23 Score=177.34 Aligned_cols=216 Identities=10% Similarity=-0.064 Sum_probs=191.7
Q ss_pred cccccccchhhhhhhhhhhccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHcCCCchHHH
Q 040440 108 AAATVESTNESTKDTTSAREDVSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQ-KLVEAVDVIDRLIELEPNEFEWQ 186 (355)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~ 186 (355)
..|.....+...+.. .+..+++++|+..++++++.+|++..++..+|.++...| ++++|+.+|+++++.+|++..++
T Consensus 51 ~~p~~~~~~~~~~~~--~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 128 (330)
T 3hym_B 51 KDPFHASCLPVHIGT--LVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAW 128 (330)
T ss_dssp HCTTCTTTHHHHHHH--HHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHH
T ss_pred cCCCChhhHHHHHHH--HHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHH
Confidence 344444444433333 244569999999999999999999999999999999999 99999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHH
Q 040440 187 LLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIA 265 (355)
Q Consensus 187 ~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la 265 (355)
..+|.++...|++++|+..|+++++..|++...+..+|.++...|+ +++|++.+++ ....+.+..++..+|
T Consensus 129 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~--------~~~A~~~~~~al~~~~~~~~~~~~l~ 200 (330)
T 3hym_B 129 IAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNN--------SKLAERFFSQALSIAPEDPFVMHEVG 200 (330)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTC--------HHHHHHHHHHHHTTCTTCHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhh--------HHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 9999999999999999999999999999999999999999999999 8888888887 566788899999999
Q ss_pred HHHHHccCHHHHHHHHHHHHHhC---------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHH
Q 040440 266 QIKVMESKHSEALRVYEELVKEE---------PRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHPYREYFV 333 (355)
Q Consensus 266 ~~~~~~g~~~~A~~~~~~~l~~~---------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~ 333 (355)
.++...|++++|+..++++++.. |....++..+|.++...|++++|+.+|++++++.|++......+.
T Consensus 201 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la 277 (330)
T 3hym_B 201 VVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIG 277 (330)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHH
Confidence 99999999999999999999876 666789999999999999999999999999999998865543333
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.92 E-value=4.7e-24 Score=187.26 Aligned_cols=208 Identities=14% Similarity=0.110 Sum_probs=179.5
Q ss_pred ccccccccchhhhhhhhhhhccC-CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHH
Q 040440 107 AAAATVESTNESTKDTTSAREDV-SYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEW 185 (355)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 185 (355)
...|....++..++.. |... ++++|+..|+++++.+|++..++..+|.+|...|++++|+.+|+++++.+|++...
T Consensus 93 ~~~p~~~~~~~~lg~~---~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 169 (365)
T 4eqf_A 93 LQDPGDAEAWQFLGIT---QAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYL 169 (365)
T ss_dssp HHCTTCHHHHHHHHHH---HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC
T ss_pred HhCcCCHHHHHHHHHH---HHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHH
Confidence 3445555555566655 5444 99999999999999999999999999999999999999999999999998876665
Q ss_pred HHHH----------HHHHHHcCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hc
Q 040440 186 QLLK----------AQVQSYAGESEAAIKGFEEILRKDPL--RVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EK 252 (355)
Q Consensus 186 ~~~l----------a~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~ 252 (355)
+..+ |.++...|++++|+.+|+++++.+|+ +..++..+|.++...|+ +++|++.+++ ..
T Consensus 170 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~--------~~~A~~~~~~al~ 241 (365)
T 4eqf_A 170 VKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGE--------FNRAIDAFNAALT 241 (365)
T ss_dssp -------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTC--------HHHHHHHHHHHHH
T ss_pred HhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHH
Confidence 5544 89999999999999999999999999 89999999999999999 7777777666 45
Q ss_pred cCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 040440 253 KKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRN 325 (355)
Q Consensus 253 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~ 325 (355)
..|.+..++..+|.+|...|++++|+..|+++++.+|++..++..+|.++...|++++|+.+|++++++.|+.
T Consensus 242 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 314 (365)
T 4eqf_A 242 VRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKS 314 (365)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC
T ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 5788899999999999999999999999999999999999999999999999999999999999999998874
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.92 E-value=6.7e-23 Score=166.90 Aligned_cols=198 Identities=12% Similarity=0.064 Sum_probs=181.3
Q ss_pred hccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHc-CCHHHHHH
Q 040440 126 REDVSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYA-GESEAAIK 204 (355)
Q Consensus 126 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~ 204 (355)
+..+++++|+..++++++.+|++..++..+|.++...|++++|+.+++++++.+|.+..++..+|.++... |++++|+.
T Consensus 19 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~ 98 (225)
T 2vq2_A 19 MRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMA 98 (225)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHH
Confidence 33459999999999999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred HHHHHHh--hCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHHHccCHHHHHHHH
Q 040440 205 GFEEILR--KDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQIKVMESKHSEALRVY 281 (355)
Q Consensus 205 ~~~~~~~--~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 281 (355)
.++++++ ..|.+...+..+|.++...|+ +++|+..+++ ....+.+..++..+|.++...|++++|+.++
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--------~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 170 (225)
T 2vq2_A 99 YFDKALADPTYPTPYIANLNKGICSAKQGQ--------FGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYF 170 (225)
T ss_dssp HHHHHHTSTTCSCHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHcCcCCcchHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999 667778999999999999999 6677766666 4456778899999999999999999999999
Q ss_pred HHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHH
Q 040440 282 EELVKEEP-RDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHPYREY 331 (355)
Q Consensus 282 ~~~l~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~ 331 (355)
+++++..| .+...+..++.++...|+.++|..+++.+.+..|++.....+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 221 (225)
T 2vq2_A 171 KKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQTV 221 (225)
T ss_dssp HHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 99999999 999999999999999999999999999999999998766543
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.92 E-value=4.1e-24 Score=187.47 Aligned_cols=227 Identities=9% Similarity=0.034 Sum_probs=192.6
Q ss_pred ccccccccccchhhhhhhhhhhcc-CC-HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCc
Q 040440 105 PVAAAATVESTNESTKDTTSARED-VS-YEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNE 182 (355)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~ 182 (355)
.+...|....++..++.. +.. ++ +++|+..|+++++.+|++..+|+.+|.++...|++++|+..|+++++++|++
T Consensus 123 al~l~P~~~~a~~~~g~~---l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~ 199 (382)
T 2h6f_A 123 AIELNAANYTVWHFRRVL---LKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKN 199 (382)
T ss_dssp HHHHCTTCHHHHHHHHHH---HHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTC
T ss_pred HHHhCccCHHHHHHHHHH---HHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccC
Confidence 556677777777777666 444 45 9999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hccCCchHHHH
Q 040440 183 FEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFK 261 (355)
Q Consensus 183 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~ 261 (355)
..+|+.+|.++...|++++|+.+|+++++++|++..+|+.+|.++...++..+++. .+++++.+++ +...|.+..+|
T Consensus 200 ~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~--~~~el~~~~~Al~l~P~~~~a~ 277 (382)
T 2h6f_A 200 YHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAV--LEREVQYTLEMIKLVPHNESAW 277 (382)
T ss_dssp HHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHH--HHHHHHHHHHHHHHSTTCHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHHH--HHHHHHHHHHHHHHCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999444233332 1122334433 34489999999
Q ss_pred HHHHHHHHHcc--CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcC--------C-HHHHHHHHHHH-HHhCCCChhHH
Q 040440 262 LLIAQIKVMES--KHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLR--------K-KDEAEKQFEKF-RRLVPRNHPYR 329 (355)
Q Consensus 262 ~~la~~~~~~g--~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g--------~-~~~A~~~~~~~-l~~~p~~~~~~ 329 (355)
..++.++...| ++++|++.++++ +.+|++..++..+|.+|.++| + +++|+++|+++ ++++|....+.
T Consensus 278 ~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w 356 (382)
T 2h6f_A 278 NYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYW 356 (382)
T ss_dssp HHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHH
T ss_pred HHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchhHHHH
Confidence 99999999988 699999999998 899999999999999999985 2 59999999999 99999876665
Q ss_pred HHHHHHHH
Q 040440 330 EYFVDNMV 337 (355)
Q Consensus 330 ~~~~~~~~ 337 (355)
..+...+.
T Consensus 357 ~~~~~~l~ 364 (382)
T 2h6f_A 357 RYIGRSLQ 364 (382)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55544443
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.92 E-value=2.1e-23 Score=189.27 Aligned_cols=206 Identities=15% Similarity=0.079 Sum_probs=182.7
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCH-HHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHH
Q 040440 130 SYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKL-VEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEE 208 (355)
Q Consensus 130 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 208 (355)
++++++..+++.....|.+..+++.+|.++...|++ ++|+.+|+++++.+|++..+|..+|.+|...|++++|+.+|++
T Consensus 83 ~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 578889999999999999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred HHhhCCCCHHHHHHHHHHHhcc-CchHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHHHc--------cCHHHHH
Q 040440 209 ILRKDPLRVEAYHGLVMAYDGS-DKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQIKVME--------SKHSEAL 278 (355)
Q Consensus 209 ~~~~~p~~~~~~~~l~~~~~~~-~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~~~--------g~~~~A~ 278 (355)
+++.+|+ ..++..+|.++... ........+.+++|++.+++ ....|.+..++..+|.+|... |++++|+
T Consensus 163 al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~ 241 (474)
T 4abn_A 163 ALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQAL 241 (474)
T ss_dssp HHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHhhCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHH
Confidence 9999999 79999999999998 00011112227777777766 556888999999999999999 9999999
Q ss_pred HHHHHHHHhCC---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHH
Q 040440 279 RVYEELVKEEP---RDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHPYREYFVDNM 336 (355)
Q Consensus 279 ~~~~~~l~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~ 336 (355)
..|+++++.+| .+..+|+.+|.+|...|++++|+..|+++++++|++......+....
T Consensus 242 ~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~ 302 (474)
T 4abn_A 242 SAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLL 302 (474)
T ss_dssp HHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 99999999999 99999999999999999999999999999999999865544444433
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.92 E-value=2e-22 Score=176.75 Aligned_cols=192 Identities=17% Similarity=0.177 Sum_probs=155.1
Q ss_pred hccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHH
Q 040440 126 REDVSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKG 205 (355)
Q Consensus 126 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 205 (355)
+..+++++|+..++++++.+|++..++..+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+..
T Consensus 75 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 154 (368)
T 1fch_A 75 LQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEI 154 (368)
T ss_dssp HHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 34459999999999999999999999999999999999999999999999999999999999999999999998888888
Q ss_pred HHHHHhhCCC---------------------------------------------------CHHHHHHHHHHHhccCchH
Q 040440 206 FEEILRKDPL---------------------------------------------------RVEAYHGLVMAYDGSDKKL 234 (355)
Q Consensus 206 ~~~~~~~~p~---------------------------------------------------~~~~~~~l~~~~~~~~~~~ 234 (355)
|++++...|+ +..++..+|.++...|+
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~-- 232 (368)
T 1fch_A 155 LRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGE-- 232 (368)
T ss_dssp HHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTC--
T ss_pred HHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCC--
Confidence 8877766554 45667777777777777
Q ss_pred HHHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHH
Q 040440 235 NEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEK 313 (355)
Q Consensus 235 ~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 313 (355)
+++|+..+++ ....|....++..+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+.
T Consensus 233 ------~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 306 (368)
T 1fch_A 233 ------YDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVE 306 (368)
T ss_dssp ------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred ------HHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 5555555555 344666677777888888888888888888888888888777888888888888888888888
Q ss_pred HHHHHHHhCCCC
Q 040440 314 QFEKFRRLVPRN 325 (355)
Q Consensus 314 ~~~~~l~~~p~~ 325 (355)
+|++++++.|++
T Consensus 307 ~~~~al~~~~~~ 318 (368)
T 1fch_A 307 HFLEALNMQRKS 318 (368)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHhCCCC
Confidence 888888777765
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=3.7e-24 Score=201.70 Aligned_cols=173 Identities=17% Similarity=0.237 Sum_probs=161.2
Q ss_pred cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 040440 144 ANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGL 223 (355)
Q Consensus 144 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 223 (355)
..|++++++.++|.+|..+|++++|+..|+++++++|++..++.++|.+|..+|++++|+..|+++++++|++..+++++
T Consensus 4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nL 83 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNM 83 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccCchHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 040440 224 VMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIY 302 (355)
Q Consensus 224 ~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~ 302 (355)
|.++...|+ +++|++.+++ +...|++..++..+|.+|..+|++++|++.|+++++++|++..++.++|.++
T Consensus 84 g~~l~~~g~--------~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l 155 (723)
T 4gyw_A 84 GNTLKEMQD--------VQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCL 155 (723)
T ss_dssp HHHHHHTTC--------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHH
T ss_pred HHHHHHcCC--------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHH
Confidence 999999999 5555555555 4458999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCC
Q 040440 303 TLLRKKDEAEKQFEKFRRLVPR 324 (355)
Q Consensus 303 ~~~g~~~~A~~~~~~~l~~~p~ 324 (355)
..+|++++|.+.+++++++.|+
T Consensus 156 ~~~g~~~~A~~~~~kal~l~~~ 177 (723)
T 4gyw_A 156 QIVCDWTDYDERMKKLVSIVAD 177 (723)
T ss_dssp HHTTCCTTHHHHHHHHHHHHHH
T ss_pred HhcccHHHHHHHHHHHHHhChh
Confidence 9999999999999999987553
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.7e-22 Score=176.27 Aligned_cols=203 Identities=16% Similarity=0.151 Sum_probs=180.1
Q ss_pred hccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHH
Q 040440 126 REDVSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKG 205 (355)
Q Consensus 126 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 205 (355)
...+++++|+..++++++.+|++..++..+|.++...|++++|+..++++++..|++..++..+|.++...|++++|+..
T Consensus 131 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 210 (359)
T 3ieg_A 131 FDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSE 210 (359)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 34459999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCHHHHHH------------HHHHHhccCchHHHHHHHHHHHHHHHHh-hccCCchH----HHHHHHHHHH
Q 040440 206 FEEILRKDPLRVEAYHG------------LVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLR----DFKLLIAQIK 268 (355)
Q Consensus 206 ~~~~~~~~p~~~~~~~~------------l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~----~~~~~la~~~ 268 (355)
|+++++..|++...+.. +|.++...|+ +++|+..+++ ....+.+. ..+..+|.++
T Consensus 211 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~--------~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~ 282 (359)
T 3ieg_A 211 VRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGR--------YTDATSKYESVMKTEPSVAEYTVRSKERICHCF 282 (359)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 99999999999887653 3778889998 6666666666 33345544 3466799999
Q ss_pred HHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHHH
Q 040440 269 VMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHPYREYFVDNM 336 (355)
Q Consensus 269 ~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~ 336 (355)
...|++++|+..|+++++.+|++..++..+|.++...|++++|+.+|+++++++|++......+....
T Consensus 283 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 350 (359)
T 3ieg_A 283 SKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQ 350 (359)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999876655544443
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.92 E-value=2.7e-23 Score=170.22 Aligned_cols=181 Identities=12% Similarity=0.079 Sum_probs=155.1
Q ss_pred CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCC-CchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 040440 146 PNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEP-NEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLV 224 (355)
Q Consensus 146 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 224 (355)
+.++..++.+|.++...|++++|+..|+++++.+| .+..+++.+|.++...|++++|+..|+++++.+|++..++..+|
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 83 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKS 83 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 45678888999999999999999999999998888 77788888999999999999999999999999999888999999
Q ss_pred HHHhccCchHHHHHHHHHHHHHHHHh-hccCCchH-------HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--ChHH
Q 040440 225 MAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLR-------DFKLLIAQIKVMESKHSEALRVYEELVKEEPR--DFRP 294 (355)
Q Consensus 225 ~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~-------~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~--~~~~ 294 (355)
.++...|+ +++|+..+++ ....|.+. .++..+|.++...|++++|+..|+++++.+|+ +..+
T Consensus 84 ~~~~~~~~--------~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 155 (228)
T 4i17_A 84 AAYRDMKN--------NQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDA 155 (228)
T ss_dssp HHHHHTTC--------HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHH
T ss_pred HHHHHccc--------HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHH
Confidence 99998888 6666666655 34456666 56888999999999999999999999999999 8899
Q ss_pred HHHHHHHHHHcCCH---------------------------HHHHHHHHHHHHhCCCChhHHHHHHH
Q 040440 295 YLCQGIIYTLLRKK---------------------------DEAEKQFEKFRRLVPRNHPYREYFVD 334 (355)
Q Consensus 295 ~~~l~~~~~~~g~~---------------------------~~A~~~~~~~l~~~p~~~~~~~~~~~ 334 (355)
++.+|.+|...|+. ++|+.+|+++++++|++......+..
T Consensus 156 ~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~ 222 (228)
T 4i17_A 156 LYSLGVLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQ 222 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHH
Confidence 99999999999988 99999999999999999766554443
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.91 E-value=1.3e-22 Score=183.00 Aligned_cols=197 Identities=14% Similarity=0.132 Sum_probs=180.6
Q ss_pred hccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHH
Q 040440 126 REDVSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKG 205 (355)
Q Consensus 126 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 205 (355)
+..+++++|+..|+++++.+|++..++..+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+..
T Consensus 37 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 116 (450)
T 2y4t_A 37 LAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDD 116 (450)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHH
Confidence 33459999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCH---HHHHHH------------HHHHhccCchHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHH
Q 040440 206 FEEILRKDPLRV---EAYHGL------------VMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQIKV 269 (355)
Q Consensus 206 ~~~~~~~~p~~~---~~~~~l------------~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~ 269 (355)
|+++++.+|++. ..+..+ +.++...|+ +++|+..+++ ....+.+..++..+|.+|.
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--------~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 188 (450)
T 2y4t_A 117 FKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGD--------YTAAIAFLDKILEVCVWDAELRELRAECFI 188 (450)
T ss_dssp HHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 999999999988 776655 555888888 7777777776 4557888999999999999
Q ss_pred HccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHH
Q 040440 270 MESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHPYRE 330 (355)
Q Consensus 270 ~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~ 330 (355)
..|++++|+.+|+++++.+|.+..++..+|.++...|++++|+..|++++.+.|++.....
T Consensus 189 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 249 (450)
T 2y4t_A 189 KEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFA 249 (450)
T ss_dssp HTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHH
Confidence 9999999999999999999999999999999999999999999999999999998865543
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.91 E-value=6.4e-22 Score=167.92 Aligned_cols=193 Identities=12% Similarity=0.101 Sum_probs=170.6
Q ss_pred hccC-CHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHH
Q 040440 126 REDV-SYEEKEKEIEQHLAA--NPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAA 202 (355)
Q Consensus 126 ~~~~-~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 202 (355)
+... ++++|++.+++++.. +|++..++..+|.++...|++++|+..+++ |.+..++..+|.++...|++++|
T Consensus 75 ~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~~~~A 149 (291)
T 3mkr_A 75 LASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSLECMAMTVQILLKLDRLDLA 149 (291)
T ss_dssp HHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHHHHHHHHHHHHHTTCHHHH
T ss_pred HcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHHHH
Confidence 5555 899999999999986 699999999999999999999999999998 88999999999999999999999
Q ss_pred HHHHHHHHhhCCCCHHHHHHHH--HHHhccCchHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHHHccCHHHHHH
Q 040440 203 IKGFEEILRKDPLRVEAYHGLV--MAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQIKVMESKHSEALR 279 (355)
Q Consensus 203 ~~~~~~~~~~~p~~~~~~~~l~--~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 279 (355)
++.|+++++.+|++.......+ .++...|+ +++|+..+++ ....|.+..++..+|.++...|++++|+.
T Consensus 150 ~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~--------~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~ 221 (291)
T 3mkr_A 150 RKELKKMQDQDEDATLTQLATAWVSLAAGGEK--------LQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEG 221 (291)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTH--------HHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHhhCcCcHHHHHHHHHHHHHhCchH--------HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999999875544333 44445566 7777777776 45578899999999999999999999999
Q ss_pred HHHHHHHhCCCChHHHHHHHHHHHHcCCHHH-HHHHHHHHHHhCCCChhHHHH
Q 040440 280 VYEELVKEEPRDFRPYLCQGIIYTLLRKKDE-AEKQFEKFRRLVPRNHPYREY 331 (355)
Q Consensus 280 ~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~l~~~p~~~~~~~~ 331 (355)
.|+++++.+|+++.++.++|.++...|+.++ +..+++++++++|+++....+
T Consensus 222 ~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d~ 274 (291)
T 3mkr_A 222 VLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKEY 274 (291)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHHHH
Confidence 9999999999999999999999999999976 578999999999998766543
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.91 E-value=2.1e-22 Score=173.56 Aligned_cols=196 Identities=12% Similarity=0.074 Sum_probs=173.0
Q ss_pred hccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHH
Q 040440 126 REDVSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKG 205 (355)
Q Consensus 126 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 205 (355)
+..+++++|+..++++++.+|++..++..+|.++...|++++|+..++++++.+|++..++..+|.++...|++++|+..
T Consensus 32 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 111 (327)
T 3cv0_A 32 LKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALAS 111 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 44459999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCHHHHHHH--------------HH-HHhccCchHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHH
Q 040440 206 FEEILRKDPLRVEAYHGL--------------VM-AYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQIKV 269 (355)
Q Consensus 206 ~~~~~~~~p~~~~~~~~l--------------~~-~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~ 269 (355)
++++++..|.+...+..+ +. ++...|+ +++|+..+++ ....+.+..++..+|.++.
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 183 (327)
T 3cv0_A 112 LRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNE--------YRECRTLLHAALEMNPNDAQLHASLGVLYN 183 (327)
T ss_dssp HHHHHHTSTTTTTC--------------------CCTTSHHH--------HHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHccc--------HHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Confidence 999999999888777666 55 5666666 6666666666 4456778899999999999
Q ss_pred HccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHH
Q 040440 270 MESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHPYR 329 (355)
Q Consensus 270 ~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~ 329 (355)
..|++++|+.+++++++.+|++..++..+|.++...|++++|+.+|+++++..|++....
T Consensus 184 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 243 (327)
T 3cv0_A 184 LSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVM 243 (327)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHH
Confidence 999999999999999999999999999999999999999999999999999999875543
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.91 E-value=3.4e-22 Score=180.18 Aligned_cols=202 Identities=17% Similarity=0.144 Sum_probs=181.5
Q ss_pred hccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHH
Q 040440 126 REDVSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKG 205 (355)
Q Consensus 126 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 205 (355)
+..+++++|+..++++++.+|.+..++..+|.+|...|++++|+..|+++++.+|++..++..+|.++...|++++|+..
T Consensus 154 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 233 (450)
T 2y4t_A 154 FGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSE 233 (450)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 34459999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCHHHHHHH------------HHHHhccCchHHHHHHHHHHHHHHHHh-hccCCch----HHHHHHHHHHH
Q 040440 206 FEEILRKDPLRVEAYHGL------------VMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDL----RDFKLLIAQIK 268 (355)
Q Consensus 206 ~~~~~~~~p~~~~~~~~l------------~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~----~~~~~~la~~~ 268 (355)
|+++++..|++...+..+ +.++...|+ +++|+..+++ ....|.+ ...+..+|.++
T Consensus 234 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--------~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~ 305 (450)
T 2y4t_A 234 VRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGR--------YTDATSKYESVMKTEPSIAEYTVRSKERICHCF 305 (450)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTC--------HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHH
Confidence 999999999999887766 889999998 6666666666 3334554 34788999999
Q ss_pred HHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHH
Q 040440 269 VMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHPYREYFVDN 335 (355)
Q Consensus 269 ~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~ 335 (355)
...|++++|+..++++++.+|++..+|..+|.++...|++++|+.+|+++++++|++......+...
T Consensus 306 ~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 372 (450)
T 2y4t_A 306 SKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKA 372 (450)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999986665544433
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.90 E-value=3e-22 Score=168.19 Aligned_cols=188 Identities=13% Similarity=0.103 Sum_probs=173.4
Q ss_pred hccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCch----HHHHHHHHHHHHcCCHHH
Q 040440 126 REDVSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEF----EWQLLKAQVQSYAGESEA 201 (355)
Q Consensus 126 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~la~~~~~~g~~~~ 201 (355)
+..+++++|+..++++++.+|++..++..+|.++...|++++|+..++++++ .+.+. .++..+|.++...|++++
T Consensus 14 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~~~~~~~~~ 92 (272)
T 3u4t_A 14 FKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKILMKKGQDSL 92 (272)
T ss_dssp HTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHHHHcccHHH
Confidence 4456999999999999999999999999999999999999999999999999 44333 358999999999999999
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHHHccCHHHHHHH
Q 040440 202 AIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQIKVMESKHSEALRV 280 (355)
Q Consensus 202 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 280 (355)
|+..|+++++.+|++..++..+|.++...|+ +++|+..+++ ....+....++..+|......+++++|+..
T Consensus 93 A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~--------~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 164 (272)
T 3u4t_A 93 AIQQYQAAVDRDTTRLDMYGQIGSYFYNKGN--------FPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSS 164 (272)
T ss_dssp HHHHHHHHHHHSTTCTHHHHHHHHHHHHTTC--------HHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhcCcccHHHHHHHHHHHHHccC--------HHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999 9999999988 566889999999999555556799999999
Q ss_pred HHHHHHhCCCChHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhC
Q 040440 281 YEELVKEEPRDFRPYLCQGIIYTLLRK---KDEAEKQFEKFRRLV 322 (355)
Q Consensus 281 ~~~~l~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~l~~~ 322 (355)
|+++++.+|++..++..+|.++...|+ +++|+..|++++++.
T Consensus 165 ~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~ 209 (272)
T 3u4t_A 165 FVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVC 209 (272)
T ss_dssp HHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHH
T ss_pred HHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHH
Confidence 999999999999999999999999999 999999999999986
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.90 E-value=2e-21 Score=179.14 Aligned_cols=218 Identities=16% Similarity=0.035 Sum_probs=190.7
Q ss_pred cccccccchhhhhhhhhhhccC-CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHH
Q 040440 108 AAATVESTNESTKDTTSAREDV-SYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQ 186 (355)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 186 (355)
..|. ...+..++.. +... ++++|+..++++++.+|++..++..+|.++...|++++|+..|+++++.+|++..++
T Consensus 272 ~~~~-~~~~~~l~~~---~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 347 (537)
T 3fp2_A 272 LHPT-PNSYIFLALT---LADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPY 347 (537)
T ss_dssp HCCC-HHHHHHHHHH---TCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHH
T ss_pred cCCC-chHHHHHHHH---HHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 3444 3444445544 5545 999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHH
Q 040440 187 LLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQ 266 (355)
Q Consensus 187 ~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~ 266 (355)
..+|.++...|++++|+..|+++++.+|++..++..+|.++...|+ ++.|...++++++..............+..+|.
T Consensus 348 ~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~ 426 (537)
T 3fp2_A 348 IQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGD-FDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKAT 426 (537)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCC-HHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998 777777777777776554444444555778899
Q ss_pred HHHHc----------cCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHH
Q 040440 267 IKVME----------SKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHPYRE 330 (355)
Q Consensus 267 ~~~~~----------g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~ 330 (355)
++... |++++|+..|+++++.+|++..++..+|.++...|++++|+.+|++++++.|++.....
T Consensus 427 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 500 (537)
T 3fp2_A 427 ILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQ 500 (537)
T ss_dssp HHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHHH
T ss_pred HHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHH
Confidence 99999 99999999999999999999999999999999999999999999999999998855543
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.90 E-value=5.5e-22 Score=173.99 Aligned_cols=200 Identities=13% Similarity=0.127 Sum_probs=172.8
Q ss_pred CCHHHHHH-HHHHHHHcCCCC----HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHH
Q 040440 129 VSYEEKEK-EIEQHLAANPND----IEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAI 203 (355)
Q Consensus 129 ~~~~~A~~-~~~~~l~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 203 (355)
++|++|+. .+++++...|++ ...++.+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+
T Consensus 39 ~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 118 (368)
T 1fch_A 39 SDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAI 118 (368)
T ss_dssp -------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHH
Confidence 38899999 999999888876 4568999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHH------------------------------------------
Q 040440 204 KGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRI------------------------------------------ 241 (355)
Q Consensus 204 ~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~------------------------------------------ 241 (355)
..|+++++.+|++..++..+|.++...|+ +++|...+
T Consensus 119 ~~~~~al~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (368)
T 1fch_A 119 SALRRCLELKPDNQTALMALAVSFTNESL-QRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLF 197 (368)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHH
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccH
Confidence 99999999999999999999999999988 55554333
Q ss_pred HHHHHHHHh-hccCCc--hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 040440 242 EKAMERCKK-EKKKSD--LRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKF 318 (355)
Q Consensus 242 ~~Al~~~~~-~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 318 (355)
++|+..+++ ....|. ...++..+|.+|...|++++|+..|++++..+|++..++..+|.++...|++++|+.+|+++
T Consensus 198 ~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 277 (368)
T 1fch_A 198 LEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRA 277 (368)
T ss_dssp HHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 445555555 344555 68889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCChhHH
Q 040440 319 RRLVPRNHPYR 329 (355)
Q Consensus 319 l~~~p~~~~~~ 329 (355)
++++|++....
T Consensus 278 l~~~~~~~~~~ 288 (368)
T 1fch_A 278 LELQPGYIRSR 288 (368)
T ss_dssp HHHCTTCHHHH
T ss_pred HHhCCCcHHHH
Confidence 99999875543
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.90 E-value=2.7e-22 Score=172.82 Aligned_cols=206 Identities=15% Similarity=0.116 Sum_probs=179.0
Q ss_pred ccccccchhhhhhhhhhhccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHH
Q 040440 109 AATVESTNESTKDTTSAREDVSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLL 188 (355)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 188 (355)
.|.....+..++.. ....+++++|+..++++++.+|++..++..+|.++...|++++|+..++++++.+|.+...+..
T Consensus 51 ~~~~~~~~~~l~~~--~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 128 (327)
T 3cv0_A 51 APEREEAWRSLGLT--QAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSV 128 (327)
T ss_dssp CTTCHHHHHHHHHH--HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC---
T ss_pred CCCCHHHHHHHHHH--HHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHH
Confidence 34434444444443 2333499999999999999999999999999999999999999999999999999988877776
Q ss_pred H--------------HH-HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hc
Q 040440 189 K--------------AQ-VQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EK 252 (355)
Q Consensus 189 l--------------a~-~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~ 252 (355)
+ +. ++...|++++|+..++++++..|++..++..+|.++...|+ +++|+..+++ ..
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~--------~~~A~~~~~~~~~ 200 (327)
T 3cv0_A 129 NLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNN--------YDSAAANLRRAVE 200 (327)
T ss_dssp -----------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcc--------HHHHHHHHHHHHH
Confidence 6 66 68889999999999999999999999999999999999999 6667666666 44
Q ss_pred cCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 040440 253 KKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPR 324 (355)
Q Consensus 253 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~ 324 (355)
..+....++..+|.++...|++++|+..|+++++..|++..++..+|.++...|++++|+.+|+++++..|+
T Consensus 201 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 272 (327)
T 3cv0_A 201 LRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVG 272 (327)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc
Confidence 578888999999999999999999999999999999999999999999999999999999999999999988
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.9e-21 Score=158.30 Aligned_cols=177 Identities=14% Similarity=0.090 Sum_probs=164.2
Q ss_pred cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 040440 144 ANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGL 223 (355)
Q Consensus 144 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 223 (355)
..|+++.++..+|.++...|++++|+..++++++.+|++..++..+|.++...|++++|++.|+++++.+|++..++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l 82 (225)
T 2vq2_A 3 KANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNY 82 (225)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHH
Confidence 46778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcc-CchHHHHHHHHHHHHHHHHh-hc--cCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 040440 224 VMAYDGS-DKKLNEVEKRIEKAMERCKK-EK--KKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQG 299 (355)
Q Consensus 224 ~~~~~~~-~~~~~~a~~~~~~Al~~~~~-~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~ 299 (355)
+.++... |+ +++|+..+++ .. ..+....++..+|.++...|++++|+..++++++..|.+..++..+|
T Consensus 83 ~~~~~~~~~~--------~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la 154 (225)
T 2vq2_A 83 GWFLCGRLNR--------PAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELA 154 (225)
T ss_dssp HHHHHTTTCC--------HHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHhcCc--------HHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHH
Confidence 9999999 99 7777777766 33 45677889999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCC-CChhH
Q 040440 300 IIYTLLRKKDEAEKQFEKFRRLVP-RNHPY 328 (355)
Q Consensus 300 ~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~ 328 (355)
.++...|++++|..+++++++..| ++...
T Consensus 155 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 184 (225)
T 2vq2_A 155 RTKMLAGQLGDADYYFKKYQSRVEVLQADD 184 (225)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHCSCCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCCHHH
Confidence 999999999999999999999999 76544
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.90 E-value=2.5e-22 Score=168.71 Aligned_cols=217 Identities=16% Similarity=0.097 Sum_probs=182.0
Q ss_pred cccccccccchhhhhhhhhhhccCCHHHHHHHHHHHHHcCCCC----HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC
Q 040440 106 VAAAATVESTNESTKDTTSAREDVSYEEKEKEIEQHLAANPND----IEALQTLMEVRIKSQKLVEAVDVIDRLIELEPN 181 (355)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~ 181 (355)
+...|.....+..++.. .+..+++++|+..++++++ .|.+ ..++..+|.++...|++++|+..|+++++.+|.
T Consensus 30 l~~~p~~~~~~~~l~~~--~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~ 106 (272)
T 3u4t_A 30 EAKKYNSPYIYNRRAVC--YYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTT 106 (272)
T ss_dssp HHTTCCCSTTHHHHHHH--HHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHhCCCcHHHHHHHHHH--HHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcc
Confidence 33455555566666654 2334499999999999999 4433 556999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH-HHHhccCchHHHHHHHHHHHHHHHHh-hccCCchHH
Q 040440 182 EFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLV-MAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRD 259 (355)
Q Consensus 182 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~-~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~ 259 (355)
+..++..+|.++...|++++|+..|+++++.+|.+..++..+| .++... + +++|++.+++ ....|....
T Consensus 107 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~-~--------~~~A~~~~~~a~~~~p~~~~ 177 (272)
T 3u4t_A 107 RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNK-E--------YVKADSSFVKVLELKPNIYI 177 (272)
T ss_dssp CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTT-C--------HHHHHHHHHHHHHHSTTCHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHH-H--------HHHHHHHHHHHHHhCccchH
Confidence 9999999999999999999999999999999999999999999 666554 5 6666666665 445788889
Q ss_pred HHHHHHHHHHHccC---HHHHHHHHHHHHHhC---CCC-----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhH
Q 040440 260 FKLLIAQIKVMESK---HSEALRVYEELVKEE---PRD-----FRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHPY 328 (355)
Q Consensus 260 ~~~~la~~~~~~g~---~~~A~~~~~~~l~~~---~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 328 (355)
.+..+|.++...|+ +++|+..|+++++.. |+. ..++..+|.+|...|++++|+.+|+++++++|++...
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a 257 (272)
T 3u4t_A 178 GYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKA 257 (272)
T ss_dssp HHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHH
Confidence 99999999999999 999999999999875 432 2688999999999999999999999999999999776
Q ss_pred HHHHHH
Q 040440 329 REYFVD 334 (355)
Q Consensus 329 ~~~~~~ 334 (355)
+..+..
T Consensus 258 ~~~l~~ 263 (272)
T 3u4t_A 258 IDGLKM 263 (272)
T ss_dssp HHHHC-
T ss_pred HHHhhh
Confidence 554433
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.2e-22 Score=184.29 Aligned_cols=183 Identities=17% Similarity=0.106 Sum_probs=169.3
Q ss_pred hccC-CH-HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHc-------
Q 040440 126 REDV-SY-EEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYA------- 196 (355)
Q Consensus 126 ~~~~-~~-~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~------- 196 (355)
+... ++ ++|++.|+++++.+|++..+|..+|.+|...|++++|+.+|+++++.+|+ ..++..+|.++...
T Consensus 112 ~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~lg~~~~~~~~~~~~~ 190 (474)
T 4abn_A 112 LNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-KVSLQNLSMVLRQLQTDSGDE 190 (474)
T ss_dssp HTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC-HHHHHHHHHHHTTCCCSCHHH
T ss_pred HHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-HHHHHHHHHHHHHhccCChhh
Confidence 4444 99 99999999999999999999999999999999999999999999999998 69999999999999
Q ss_pred --CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhcc--------CchHHHHHHHHHHHHHHHHh-hccCC---chHHHHH
Q 040440 197 --GESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGS--------DKKLNEVEKRIEKAMERCKK-EKKKS---DLRDFKL 262 (355)
Q Consensus 197 --g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~--------~~~~~~a~~~~~~Al~~~~~-~~~~~---~~~~~~~ 262 (355)
|++++|+..|+++++.+|++..+|+.+|.+|... |+ +++|++.+++ ....| .+..++.
T Consensus 191 ~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~--------~~~A~~~~~~al~~~p~~~~~~~~~~ 262 (474)
T 4abn_A 191 HSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKI--------SQQALSAYAQAEKVDRKASSNPDLHL 262 (474)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHH--------HHHHHHHHHHHHHHCGGGGGCHHHHH
T ss_pred hhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccch--------HHHHHHHHHHHHHhCCCcccCHHHHH
Confidence 9999999999999999999999999999999988 77 6666666666 33467 8899999
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHH
Q 040440 263 LIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEK 317 (355)
Q Consensus 263 ~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 317 (355)
.+|.+|...|++++|+..|+++++.+|++..++..++.++...|++++|+..+.+
T Consensus 263 ~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 263 NRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999999999999986654
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.6e-21 Score=182.13 Aligned_cols=190 Identities=14% Similarity=0.036 Sum_probs=108.4
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHH----------------------------------HHHHHHHHHccCHHHHHHHHHHH
Q 040440 130 SYEEKEKEIEQHLAANPNDIEAL----------------------------------QTLMEVRIKSQKLVEAVDVIDRL 175 (355)
Q Consensus 130 ~~~~A~~~~~~~l~~~p~~~~~~----------------------------------~~la~~~~~~g~~~~A~~~~~~~ 175 (355)
++++|++.|+++++.+|++..++ ..+|.+|...|++++|+++|+++
T Consensus 320 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 399 (597)
T 2xpi_A 320 RFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKS 399 (597)
T ss_dssp CHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 77777777777776666554444 44555555555555555555555
Q ss_pred HHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hccC
Q 040440 176 IELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKK 254 (355)
Q Consensus 176 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~ 254 (355)
++.+|.+...|..++.++...|++++|++.|+++++..|++...+..++.+|...|+ +++|++.+++ ....
T Consensus 400 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--------~~~A~~~~~~~~~~~ 471 (597)
T 2xpi_A 400 STMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGN--------ILLANEYLQSSYALF 471 (597)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTC--------HHHHHHHHHHHHHHC
T ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHhC
Confidence 555555444555555555555555555555555555555555555555555555554 4444444444 2334
Q ss_pred CchHHHHHHHHHHHHHccCHHHHHHHHHHHHHh------CCCC-hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChh
Q 040440 255 SDLRDFKLLIAQIKVMESKHSEALRVYEELVKE------EPRD-FRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHP 327 (355)
Q Consensus 255 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~------~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 327 (355)
+.+...+..+|.+|...|++++|++.|+++++. +|++ ..+|..+|.++...|++++|+..|+++++.+|++..
T Consensus 472 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 551 (597)
T 2xpi_A 472 QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDAN 551 (597)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHH
T ss_pred CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChH
Confidence 555566666666666666666666666666655 3332 456666666666666666666666666666665543
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.90 E-value=5.7e-22 Score=156.65 Aligned_cols=159 Identities=18% Similarity=0.268 Sum_probs=149.5
Q ss_pred hccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHH
Q 040440 126 REDVSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKG 205 (355)
Q Consensus 126 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 205 (355)
+..+++++|++.|+++++.+|+++.++..+|.+|...|++++|+..+++++...|+...++..+|.++...++++.|+..
T Consensus 16 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 95 (184)
T 3vtx_A 16 RTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFMIDEKQAAIDA 95 (184)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 33459999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 040440 206 FEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQIKVMESKHSEALRVYEEL 284 (355)
Q Consensus 206 ~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 284 (355)
+++++..+|++..++..+|.++...|+ +++|++.+++ ....|.+..++..+|.+|..+|++++|+..|+++
T Consensus 96 ~~~a~~~~~~~~~~~~~lg~~~~~~g~--------~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 167 (184)
T 3vtx_A 96 LQRAIALNTVYADAYYKLGLVYDSMGE--------HDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKA 167 (184)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhCccchHHHHHHHHHHHHhCC--------chhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 999999999999999999999999999 7777777776 5568899999999999999999999999999999
Q ss_pred HHhCCCCh
Q 040440 285 VKEEPRDF 292 (355)
Q Consensus 285 l~~~~~~~ 292 (355)
++.+|+++
T Consensus 168 l~~~p~~a 175 (184)
T 3vtx_A 168 LEKEEKKA 175 (184)
T ss_dssp HHTTHHHH
T ss_pred HhCCccCH
Confidence 99988654
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.89 E-value=2.8e-21 Score=161.54 Aligned_cols=179 Identities=12% Similarity=0.064 Sum_probs=155.4
Q ss_pred HHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCc---hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC--
Q 040440 142 LAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNE---FEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLR-- 216 (355)
Q Consensus 142 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~-- 216 (355)
...+|.++..++.+|..++..|++++|+..|+++++.+|++ ..+++.+|.++...|++++|+..|+++++.+|++
T Consensus 8 ~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 87 (261)
T 3qky_A 8 GRLRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPR 87 (261)
T ss_dssp ---CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCch
Confidence 34578899999999999999999999999999999999988 8899999999999999999999999999998854
Q ss_pred -HHHHHHHHHHHhc--------cCchHHHHHHHHHHHHHHHHh-hccCCchHHHH-----------------HHHHHHHH
Q 040440 217 -VEAYHGLVMAYDG--------SDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFK-----------------LLIAQIKV 269 (355)
Q Consensus 217 -~~~~~~l~~~~~~--------~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~-----------------~~la~~~~ 269 (355)
..+++.+|.++.. .|+ +++|+..+++ ....|++.... +.+|.+|.
T Consensus 88 ~~~a~~~lg~~~~~~~~~~~~~~~~--------~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~ 159 (261)
T 3qky_A 88 VPQAEYERAMCYYKLSPPYELDQTD--------TRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYE 159 (261)
T ss_dssp HHHHHHHHHHHHHHHCCCTTSCCHH--------HHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcccccccchh--------HHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6789999999998 877 6666666666 33344443333 88899999
Q ss_pred HccCHHHHHHHHHHHHHhCCC---ChHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHhCCCChhH
Q 040440 270 MESKHSEALRVYEELVKEEPR---DFRPYLCQGIIYTLL----------RKKDEAEKQFEKFRRLVPRNHPY 328 (355)
Q Consensus 270 ~~g~~~~A~~~~~~~l~~~~~---~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~l~~~p~~~~~ 328 (355)
..|++++|+..|+++++.+|+ ...+++.+|.+|..+ |++++|+..|+++++..|++...
T Consensus 160 ~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 231 (261)
T 3qky_A 160 RRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLL 231 (261)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHH
T ss_pred HccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHH
Confidence 999999999999999999997 456899999999977 99999999999999999988544
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.89 E-value=4.7e-21 Score=159.05 Aligned_cols=177 Identities=12% Similarity=0.060 Sum_probs=164.8
Q ss_pred cCCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 040440 144 ANPND-IEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHG 222 (355)
Q Consensus 144 ~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 222 (355)
.+|.+ +.++..+|.++...|++++|+.+|+++++.+|.+..++..+|.++...|++++|++.|+++++.+|++..++..
T Consensus 31 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 110 (252)
T 2ho1_A 31 KGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNN 110 (252)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHH
Confidence 34554 78899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccCchHHHHHHHHHHHHHHHHh-hc--cCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 040440 223 LVMAYDGSDKKLNEVEKRIEKAMERCKK-EK--KKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQG 299 (355)
Q Consensus 223 l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~ 299 (355)
++.++...|+ +++|++.+++ .. ..+....++..+|.++...|++++|+.+|+++++..|.+..++..+|
T Consensus 111 la~~~~~~g~--------~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la 182 (252)
T 2ho1_A 111 YGGFLYEQKR--------YEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMA 182 (252)
T ss_dssp HHHHHHHTTC--------HHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHH
T ss_pred HHHHHHHHhH--------HHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHH
Confidence 9999999999 8888888877 34 56778899999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCChhH
Q 040440 300 IIYTLLRKKDEAEKQFEKFRRLVPRNHPY 328 (355)
Q Consensus 300 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 328 (355)
.++...|++++|..+++++++..|++...
T Consensus 183 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 211 (252)
T 2ho1_A 183 DLLYKEREYVPARQYYDLFAQGGGQNARS 211 (252)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTSCCCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCcCcHHH
Confidence 99999999999999999999999987544
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.89 E-value=6e-21 Score=160.35 Aligned_cols=187 Identities=17% Similarity=0.095 Sum_probs=106.8
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 040440 130 SYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEI 209 (355)
Q Consensus 130 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 209 (355)
++++|+..|+++++.+|++..++..+|.++...|++++|+.+|+++++.+|++..++..+|.++...|++++|+..|+++
T Consensus 58 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 137 (275)
T 1xnf_A 58 LRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAF 137 (275)
T ss_dssp CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 55555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q 040440 210 LRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEE 288 (355)
Q Consensus 210 ~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 288 (355)
++.+|++......++.+ ...|+ +++|+..+++ ....+..... ..++.++...++.++|+..+++++...
T Consensus 138 ~~~~~~~~~~~~~~~~~-~~~~~--------~~~A~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~a~~~~~~~~~~~ 207 (275)
T 1xnf_A 138 YQDDPNDPFRSLWLYLA-EQKLD--------EKQAKEVLKQHFEKSDKEQWG-WNIVEFYLGNISEQTLMERLKADATDN 207 (275)
T ss_dssp HHHCTTCHHHHHHHHHH-HHHHC--------HHHHHHHHHHHHHHSCCCSTH-HHHHHHHTTSSCHHHHHHHHHHHCCSH
T ss_pred HHhCCCChHHHHHHHHH-HHhcC--------HHHHHHHHHHHHhcCCcchHH-HHHHHHHHHhcCHHHHHHHHHHHhccc
Confidence 55555554433333322 22233 3444444433 1112222222 234455555555566666666655444
Q ss_pred CC----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q 040440 289 PR----DFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNH 326 (355)
Q Consensus 289 ~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~ 326 (355)
|. +..++..+|.++...|++++|+.+|++++.++|++.
T Consensus 208 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 249 (275)
T 1xnf_A 208 TSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNF 249 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTC
T ss_pred ccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhH
Confidence 32 257889999999999999999999999999999763
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.88 E-value=5.7e-21 Score=156.28 Aligned_cols=170 Identities=16% Similarity=0.059 Sum_probs=158.1
Q ss_pred hccCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHH
Q 040440 126 REDVSYEEKEKEIEQHLAANP-NDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIK 204 (355)
Q Consensus 126 ~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 204 (355)
+..+++++|+..|+++++.+| .+..+++.+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+.
T Consensus 18 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~ 97 (228)
T 4i17_A 18 LNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRDMKNNQEYIA 97 (228)
T ss_dssp HHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHcccHHHHHH
Confidence 444599999999999999999 8999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCCH-------HHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hccCCc--hHHHHHHHHHHHHHccCH
Q 040440 205 GFEEILRKDPLRV-------EAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSD--LRDFKLLIAQIKVMESKH 274 (355)
Q Consensus 205 ~~~~~~~~~p~~~-------~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~--~~~~~~~la~~~~~~g~~ 274 (355)
.|+++++.+|++. .++..+|.++...|+ +++|++.+++ ....|. ....+..+|.+|...|+.
T Consensus 98 ~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~--------~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~ 169 (228)
T 4i17_A 98 TLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGN--------IEKAEENYKHATDVTSKKWKTDALYSLGVLFYNNGAD 169 (228)
T ss_dssp HHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhcc--------HHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHH
Confidence 9999999999998 668899999999999 8888888888 566888 889999999999999988
Q ss_pred ---------------------------HHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 040440 275 ---------------------------SEALRVYEELVKEEPRDFRPYLCQGIIYT 303 (355)
Q Consensus 275 ---------------------------~~A~~~~~~~l~~~~~~~~~~~~l~~~~~ 303 (355)
++|+.+|+++++.+|++..+...++.+..
T Consensus 170 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~~ 225 (228)
T 4i17_A 170 VLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVKA 225 (228)
T ss_dssp HHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHT
T ss_pred HHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence 99999999999999999999888887754
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.88 E-value=3.8e-21 Score=176.13 Aligned_cols=214 Identities=16% Similarity=0.036 Sum_probs=181.8
Q ss_pred ccchhhhhhhhhhhccC-CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHH
Q 040440 113 ESTNESTKDTTSAREDV-SYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQ 191 (355)
Q Consensus 113 ~~~~~~~~~~~~~~~~~-~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~ 191 (355)
...+..++.. +... ++++|+..++++++.+|.+..++..+|.++...|++++|+..|+++++.+|.+..++..+|.
T Consensus 270 ~~~~~~l~~~---~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 346 (514)
T 2gw1_A 270 VNSYIYMALI---MADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLAC 346 (514)
T ss_dssp HHHHHHHHHH---HHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHH
T ss_pred HHHHHHHHHH---HHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHH
Confidence 3334444443 4444 89999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHH-
Q 040440 192 VQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVM- 270 (355)
Q Consensus 192 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~- 270 (355)
++...|++++|+..|+++++..|++..++..+|.++...|+ +++|...++++++..............+..+|.++..
T Consensus 347 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~-~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~ 425 (514)
T 2gw1_A 347 LAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKND-FDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRN 425 (514)
T ss_dssp HTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTS
T ss_pred HHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999998 5555555555555443322222225589999999999
Q ss_pred --ccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHH
Q 040440 271 --ESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHPYRE 330 (355)
Q Consensus 271 --~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~ 330 (355)
.|++++|+..|++++..+|++..++..+|.++...|++++|..+|+++++++|++.....
T Consensus 426 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 487 (514)
T 2gw1_A 426 PTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQ 487 (514)
T ss_dssp CCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHH
T ss_pred hhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHH
Confidence 999999999999999999999999999999999999999999999999999998755543
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.88 E-value=4.9e-21 Score=150.82 Aligned_cols=172 Identities=13% Similarity=0.109 Sum_probs=158.8
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 040440 148 DIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAY 227 (355)
Q Consensus 148 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 227 (355)
....+..+|.++...|++++|+..++++++.+|.+..++..+|.++...|++++|+..++++++..|++..++..++.++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 7 RQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 35678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCchHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcC
Q 040440 228 DGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLR 306 (355)
Q Consensus 228 ~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g 306 (355)
...|+ +++|++.+++ ....+....++..+|.++...|++++|+.+++++++..|.+..++..+|.++...|
T Consensus 87 ~~~~~--------~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 158 (186)
T 3as5_A 87 VQVQK--------YDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMG 158 (186)
T ss_dssp HHHTC--------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHhcC--------HHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcC
Confidence 99999 6666666666 44467788899999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCChh
Q 040440 307 KKDEAEKQFEKFRRLVPRNHP 327 (355)
Q Consensus 307 ~~~~A~~~~~~~l~~~p~~~~ 327 (355)
++++|..+++++++..|++..
T Consensus 159 ~~~~A~~~~~~~~~~~~~~~~ 179 (186)
T 3as5_A 159 RHEEALPHFKKANELDEGASV 179 (186)
T ss_dssp CHHHHHHHHHHHHHHHHCCCG
T ss_pred CHHHHHHHHHHHHHcCCCchh
Confidence 999999999999999887643
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.88 E-value=8e-21 Score=157.87 Aligned_cols=180 Identities=17% Similarity=0.177 Sum_probs=161.3
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-------HHHH
Q 040440 148 DIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLR-------VEAY 220 (355)
Q Consensus 148 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~-------~~~~ 220 (355)
....+..+|.++...|++++|+.+|+++++.+ .+..++..+|.++...|++++|+..++++++..|++ ..++
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 46789999999999999999999999999999 889999999999999999999999999999998876 7899
Q ss_pred HHHHHHHhccCchHHHHHHHHHHHHH-------------------HHHh-hccCCchHHHHHHHHHHHHHccCHHHHHHH
Q 040440 221 HGLVMAYDGSDKKLNEVEKRIEKAME-------------------RCKK-EKKKSDLRDFKLLIAQIKVMESKHSEALRV 280 (355)
Q Consensus 221 ~~l~~~~~~~~~~~~~a~~~~~~Al~-------------------~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 280 (355)
..+|.++...|+ +++|...+++++. .+++ ....+....++..+|.++...|++++|+..
T Consensus 83 ~~l~~~~~~~~~-~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 161 (258)
T 3uq3_A 83 ARIGNAYHKLGD-LKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKA 161 (258)
T ss_dssp HHHHHHHHHTTC-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHccc-HHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHH
Confidence 999999999998 6666555555555 3333 336777888999999999999999999999
Q ss_pred HHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHH
Q 040440 281 YEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHPYR 329 (355)
Q Consensus 281 ~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~ 329 (355)
|+++++.+|.+..++..+|.++...|++++|+.+|+++++.+|++....
T Consensus 162 ~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 210 (258)
T 3uq3_A 162 YTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAY 210 (258)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHH
Confidence 9999999999999999999999999999999999999999999885543
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.87 E-value=7.8e-21 Score=156.65 Aligned_cols=173 Identities=17% Similarity=0.101 Sum_probs=143.4
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 040440 148 DIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAY 227 (355)
Q Consensus 148 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 227 (355)
.+..+..+|..+...|++++|+.+|+++++.+|++..++..+|.++...|++++|+..|+++++.+|++..++..++.++
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 101 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVY 101 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCchHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcC
Q 040440 228 DGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLR 306 (355)
Q Consensus 228 ~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g 306 (355)
...|+ +++|++.+++ ....+....++..+|.++...|++++|+..++++++..|.+..++..+|.++...|
T Consensus 102 ~~~~~--------~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 173 (243)
T 2q7f_A 102 VVKEM--------YKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEG 173 (243)
T ss_dssp HHTTC--------HHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred HHhcc--------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcC
Confidence 99999 6777776666 44567788899999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCChhH
Q 040440 307 KKDEAEKQFEKFRRLVPRNHPY 328 (355)
Q Consensus 307 ~~~~A~~~~~~~l~~~p~~~~~ 328 (355)
++++|+.+|+++++..|++...
T Consensus 174 ~~~~A~~~~~~~~~~~~~~~~~ 195 (243)
T 2q7f_A 174 MLDEALSQFAAVTEQDPGHADA 195 (243)
T ss_dssp CCHHHHHHHHHHHHHCTTCHHH
T ss_pred CHHHHHHHHHHHHHhCcccHHH
Confidence 9999999999999999987554
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.87 E-value=4.3e-20 Score=158.20 Aligned_cols=181 Identities=13% Similarity=0.074 Sum_probs=91.5
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-------ccCH-------HHHHHHHHHHHH-cCCCchHHHHHHHHHHHHc
Q 040440 132 EEKEKEIEQHLAANPNDIEALQTLMEVRIK-------SQKL-------VEAVDVIDRLIE-LEPNEFEWQLLKAQVQSYA 196 (355)
Q Consensus 132 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~-------~g~~-------~~A~~~~~~~~~-~~~~~~~~~~~la~~~~~~ 196 (355)
++|+..|++++..+|+++.+|+.+|..+.. .|++ ++|+..|+++++ ++|++..+|..+|.++...
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~ 112 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 112 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 345555555555555555555555555442 2443 555555555555 3555555555555555555
Q ss_pred CCHHHHHHHHHHHHhhCCCCHH-HHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHHH-ccC
Q 040440 197 GESEAAIKGFEEILRKDPLRVE-AYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQIKVM-ESK 273 (355)
Q Consensus 197 g~~~~A~~~~~~~~~~~p~~~~-~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~~-~g~ 273 (355)
|++++|+..|+++++..|.+.. +|..++.++.+.|+ +++|+..+++ ....+....++...+.+... .|+
T Consensus 113 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~--------~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~ 184 (308)
T 2ond_A 113 MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEG--------IKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKD 184 (308)
T ss_dssp TCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHC--------HHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCC
T ss_pred CCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcC--------HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCC
Confidence 5555555555555555555544 55555555555544 3344444433 22233333444333333222 355
Q ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 040440 274 HSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRR 320 (355)
Q Consensus 274 ~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 320 (355)
+++|+.+|+++++.+|++..+|..++.++...|++++|+.+|++++.
T Consensus 185 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~ 231 (308)
T 2ond_A 185 KSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLT 231 (308)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 55555555555555555555555555555555555555555555555
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=2.8e-21 Score=182.16 Aligned_cols=170 Identities=16% Similarity=0.140 Sum_probs=152.5
Q ss_pred ccccccchhhhhhhhhhhccC-CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHH
Q 040440 109 AATVESTNESTKDTTSAREDV-SYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQL 187 (355)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 187 (355)
.|....++..++.. |... ++++|++.|+++++.+|++..++.++|.+|...|++++|+..|+++++++|++..++.
T Consensus 5 ~P~~a~al~nLG~~---~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~ 81 (723)
T 4gyw_A 5 CPTHADSLNNLANI---KREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYS 81 (723)
T ss_dssp -CHHHHHHHHHHHH---HHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CCCcHHHHHHHHHH---HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 34444555555555 4444 9999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHHH
Q 040440 188 LKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQ 266 (355)
Q Consensus 188 ~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~ 266 (355)
++|.++..+|++++|++.|+++++++|++..++..+|.+|...|+ +++|++.+++ +...|+...++..+|.
T Consensus 82 nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~--------~~eAi~~~~~Al~l~P~~~~a~~~L~~ 153 (723)
T 4gyw_A 82 NMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGN--------IPEAIASYRTALKLKPDFPDAYCNLAH 153 (723)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHCSCCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHhCCCChHHHhhhhh
Confidence 999999999999999999999999999999999999999999999 6666666655 4558999999999999
Q ss_pred HHHHccCHHHHHHHHHHHHHhCC
Q 040440 267 IKVMESKHSEALRVYEELVKEEP 289 (355)
Q Consensus 267 ~~~~~g~~~~A~~~~~~~l~~~~ 289 (355)
+|...|++++|++.++++++..+
T Consensus 154 ~l~~~g~~~~A~~~~~kal~l~~ 176 (723)
T 4gyw_A 154 CLQIVCDWTDYDERMKKLVSIVA 176 (723)
T ss_dssp HHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHhcccHHHHHHHHHHHHHhCh
Confidence 99999999999999999988654
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.87 E-value=6.5e-21 Score=174.54 Aligned_cols=194 Identities=16% Similarity=0.195 Sum_probs=179.9
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHH
Q 040440 127 EDVSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGF 206 (355)
Q Consensus 127 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 206 (355)
..+++++|+..++++++.+|+ ..++..+|.++...|++++|+..+++++..+|.+..++..+|.++...|++++|+..|
T Consensus 249 ~~~~~~~A~~~~~~~l~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 327 (514)
T 2gw1_A 249 LKNDPLGAHEDIKKAIELFPR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDF 327 (514)
T ss_dssp HSSCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHH
T ss_pred HCCCHHHHHHHHHHHHhhCcc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 344999999999999999999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 040440 207 EEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELV 285 (355)
Q Consensus 207 ~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 285 (355)
+++++..|++..++..++.++...|+ +++|+..+++ ....+....++..+|.++...|++++|+..|++++
T Consensus 328 ~~~~~~~~~~~~~~~~l~~~~~~~~~--------~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 399 (514)
T 2gw1_A 328 DKAKELDPENIFPYIQLACLAYRENK--------FDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAI 399 (514)
T ss_dssp HHHHHTCSSCSHHHHHHHHHTTTTTC--------HHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhChhhHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999 6777776666 44567788899999999999999999999999999
Q ss_pred HhCCCChH------HHHHHHHHHHH---cCCHHHHHHHHHHHHHhCCCChhHH
Q 040440 286 KEEPRDFR------PYLCQGIIYTL---LRKKDEAEKQFEKFRRLVPRNHPYR 329 (355)
Q Consensus 286 ~~~~~~~~------~~~~l~~~~~~---~g~~~~A~~~~~~~l~~~p~~~~~~ 329 (355)
...|++.. ++..+|.++.. .|++++|+.+|++++..+|++....
T Consensus 400 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 452 (514)
T 2gw1_A 400 ELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAK 452 (514)
T ss_dssp HHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHH
Confidence 99887755 99999999999 9999999999999999999885543
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.87 E-value=8.7e-21 Score=152.95 Aligned_cols=159 Identities=17% Similarity=0.128 Sum_probs=126.0
Q ss_pred hccCCHHHHHHHHHHHHHcCCCCHHHHHH----------------HHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHH
Q 040440 126 REDVSYEEKEKEIEQHLAANPNDIEALQT----------------LMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLK 189 (355)
Q Consensus 126 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~----------------la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 189 (355)
+..+++++|+..|+++++.+|++..+++. +|.+|...|++++|+..|+++++.+|++..++..+
T Consensus 15 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 94 (208)
T 3urz_A 15 IEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEAC 94 (208)
T ss_dssp HHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence 55569999999999999999999999999 99999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHH
Q 040440 190 AQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKV 269 (355)
Q Consensus 190 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~ 269 (355)
|.++...|++++|+..|+++++++|++..+++.+|.+|...|+ ....++...++...........++.+|.++.
T Consensus 95 g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~ 168 (208)
T 3urz_A 95 AEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAE------QEKKKLETDYKKLSSPTKMQYARYRDGLSKL 168 (208)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH------HHHHHHHHHHC---CCCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhH------HHHHHHHHHHHHHhCCCchhHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999876653 1123333333332222222334555566666
Q ss_pred HccCHHHHHHHHHHHHHhCCC
Q 040440 270 MESKHSEALRVYEELVKEEPR 290 (355)
Q Consensus 270 ~~g~~~~A~~~~~~~l~~~~~ 290 (355)
..|++++|+..|+++++++|+
T Consensus 169 ~~~~~~~A~~~~~~al~l~P~ 189 (208)
T 3urz_A 169 FTTRYEKARNSLQKVILRFPS 189 (208)
T ss_dssp HHHTHHHHHHHHHHHTTTSCC
T ss_pred HccCHHHHHHHHHHHHHhCCC
Confidence 666666666666666666663
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.87 E-value=1.3e-20 Score=173.76 Aligned_cols=188 Identities=18% Similarity=0.084 Sum_probs=172.6
Q ss_pred CHHHHHHHHHHHHHcCCCCHH-------HHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHH
Q 040440 130 SYEEKEKEIEQHLAANPNDIE-------ALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAA 202 (355)
Q Consensus 130 ~~~~A~~~~~~~l~~~p~~~~-------~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 202 (355)
++++|+..++++++.+|++.. ++..+|.++...|++++|+..|+++++.+|+ ..++..+|.++...|++++|
T Consensus 217 ~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A 295 (537)
T 3fp2_A 217 LLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQEF 295 (537)
T ss_dssp HHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCHHH
T ss_pred HHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCHHHH
Confidence 789999999999999999865 5778888999999999999999999999998 88999999999999999999
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHHHccCHHHHHHHH
Q 040440 203 IKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQIKVMESKHSEALRVY 281 (355)
Q Consensus 203 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 281 (355)
+..|+++++.+|++..++..+|.++...|+ +++|+..+++ ....+....++..+|.++...|++++|+..|
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--------~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 367 (537)
T 3fp2_A 296 FKFFQKAVDLNPEYPPTYYHRGQMYFILQD--------YKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFF 367 (537)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHhccCCCCHHHHHHHHHHHHhcCC--------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999999999999999999999999 6666666666 4456778899999999999999999999999
Q ss_pred HHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q 040440 282 EELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNH 326 (355)
Q Consensus 282 ~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~ 326 (355)
+++++.+|++..++..+|.++...|++++|+..|+++++..|++.
T Consensus 368 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 412 (537)
T 3fp2_A 368 NETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQE 412 (537)
T ss_dssp HHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcch
Confidence 999999999999999999999999999999999999999887653
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.1e-20 Score=152.40 Aligned_cols=169 Identities=13% Similarity=0.134 Sum_probs=147.5
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHH----------------HHHHHHHcCCHHHHHHHHHHHHh
Q 040440 148 DIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLL----------------KAQVQSYAGESEAAIKGFEEILR 211 (355)
Q Consensus 148 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~----------------la~~~~~~g~~~~A~~~~~~~~~ 211 (355)
+++.+...|..+...|++++|+..|+++++.+|++..+++. +|.++...|++++|+..|+++++
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 82 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ 82 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 56778899999999999999999999999999999999999 99999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHHHccC--HHHHHHHHHHHHHhC
Q 040440 212 KDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQIKVMESK--HSEALRVYEELVKEE 288 (355)
Q Consensus 212 ~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~~~l~~~ 288 (355)
.+|++..++..+|.++...|+ +++|+..+++ +...|++..++..+|.+|...|+ .+.+...+++++...
T Consensus 83 ~~p~~~~~~~~lg~~~~~~g~--------~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (208)
T 3urz_A 83 KAPNNVDCLEACAEMQVCRGQ--------EKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPT 154 (208)
T ss_dssp HCTTCHHHHHHHHHHHHHHTC--------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCC
T ss_pred HCCCCHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCC
Confidence 999999999999999999999 6777777666 55689999999999999987764 456677787776433
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 040440 289 PRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRN 325 (355)
Q Consensus 289 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~ 325 (355)
| ....++.+|.++...|++++|+.+|+++++++|+.
T Consensus 155 ~-~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 155 K-MQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp H-HHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred c-hhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence 2 33467889999999999999999999999999974
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=6e-21 Score=163.14 Aligned_cols=197 Identities=19% Similarity=0.181 Sum_probs=171.4
Q ss_pred ccCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHc--------CCCchHHHHHHH
Q 040440 127 EDVSYEEKEKEIEQHLAA--------NPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIEL--------EPNEFEWQLLKA 190 (355)
Q Consensus 127 ~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~la 190 (355)
..+++++|+..++++++. .|....++..+|.+|...|++++|+.++++++.. .+....++..+|
T Consensus 39 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 118 (311)
T 3nf1_A 39 SQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLA 118 (311)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 345999999999999984 6677889999999999999999999999999987 345566899999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhC--------CCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhh--ccCCchHHH
Q 040440 191 QVQSYAGESEAAIKGFEEILRKD--------PLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKE--KKKSDLRDF 260 (355)
Q Consensus 191 ~~~~~~g~~~~A~~~~~~~~~~~--------p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~--~~~~~~~~~ 260 (355)
.++...|++++|+.+|+++++.. +....++..+|.++...|+ +++|...++++++.+++. ...+....+
T Consensus 119 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~-~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 197 (311)
T 3nf1_A 119 VLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGK-YEEVEYYYQRALEIYQTKLGPDDPNVAKT 197 (311)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTC-HHHHHHHHHHHHHHHHHTSCTTCHHHHHH
T ss_pred HHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 99999999999999999999874 4556778999999999998 788888888888877763 345667778
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHh-------------------------------------------------CCCC
Q 040440 261 KLLIAQIKVMESKHSEALRVYEELVKE-------------------------------------------------EPRD 291 (355)
Q Consensus 261 ~~~la~~~~~~g~~~~A~~~~~~~l~~-------------------------------------------------~~~~ 291 (355)
+..+|.+|...|++++|+.+++++++. .|..
T Consensus 198 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 277 (311)
T 3nf1_A 198 KNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTV 277 (311)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---------CHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchH
Confidence 999999999999999999999999974 3455
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 040440 292 FRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPR 324 (355)
Q Consensus 292 ~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~ 324 (355)
..++..+|.+|...|++++|+.+|++++++.|+
T Consensus 278 ~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 278 TTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 678999999999999999999999999998775
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.86 E-value=5.5e-21 Score=180.77 Aligned_cols=174 Identities=13% Similarity=0.102 Sum_probs=157.5
Q ss_pred hccCCHHHHHHHHHHHH--------HcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcC
Q 040440 126 REDVSYEEKEKEIEQHL--------AANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAG 197 (355)
Q Consensus 126 ~~~~~~~~A~~~~~~~l--------~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g 197 (355)
...+++++|++.+++++ +.+|++..++..+|.++...|++++|+..|+++++.+|++..+++.+|.++...|
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g 481 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTG 481 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHT
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcC
Confidence 45569999999999999 8999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHccCHHHH
Q 040440 198 ESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSEA 277 (355)
Q Consensus 198 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 277 (355)
++++|+..|+++++++|++..+++.+|.++...|+ +++ ...|++|++ .+|.+..+++.+|.+|...|++++|
T Consensus 482 ~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~-~~~-~~~~~~al~------~~P~~~~a~~~lg~~~~~~g~~~~A 553 (681)
T 2pzi_A 482 DYDSATKHFTEVLDTFPGELAPKLALAATAELAGN-TDE-HKFYQTVWS------TNDGVISAAFGLARARSAEGDRVGA 553 (681)
T ss_dssp CHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTC-CCT-TCHHHHHHH------HCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCC-hHH-HHHHHHHHH------hCCchHHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999999999999999999999999 333 444444444 4889999999999999999999999
Q ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHHcCC
Q 040440 278 LRVYEELVKEEPRDFRPYLCQGIIYTLLRK 307 (355)
Q Consensus 278 ~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~ 307 (355)
+..|+++++.+|++..+++++|.++...|+
T Consensus 554 ~~~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 554 VRTLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHHHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 999999999999999999999999988766
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.86 E-value=8.1e-20 Score=156.50 Aligned_cols=190 Identities=10% Similarity=0.039 Sum_probs=167.6
Q ss_pred HHHHHHHHHHHHH-cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchH-HHHHHHHHHHHcCCHHHHHHHHHH
Q 040440 131 YEEKEKEIEQHLA-ANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFE-WQLLKAQVQSYAGESEAAIKGFEE 208 (355)
Q Consensus 131 ~~~A~~~~~~~l~-~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~la~~~~~~g~~~~A~~~~~~ 208 (355)
+++|+..|+++++ .+|++..+|..+|.++...|++++|+..|+++++..|.+.. +|..+|.++...|++++|+..|++
T Consensus 80 ~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 159 (308)
T 2ond_A 80 SDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKK 159 (308)
T ss_dssp HHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 3999999999999 69999999999999999999999999999999999999887 899999999999999999999999
Q ss_pred HHhhCCCCHHHHHHHHHHHhc-cCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 040440 209 ILRKDPLRVEAYHGLVMAYDG-SDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKE 287 (355)
Q Consensus 209 ~~~~~p~~~~~~~~l~~~~~~-~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 287 (355)
+++..|....++...+.+... .|+ .+.|...|++|++ ..|.+..++..++.++...|++++|+.+|++++..
T Consensus 160 a~~~~p~~~~~~~~~a~~~~~~~~~-~~~A~~~~~~al~------~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 232 (308)
T 2ond_A 160 AREDARTRHHVYVTAALMEYYCSKD-KSVAFKIFELGLK------KYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS 232 (308)
T ss_dssp HHTSTTCCTHHHHHHHHHHHHTSCC-HHHHHHHHHHHHH------HHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHS
T ss_pred HHhcCCCCHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHH------hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 999999988888777766443 576 4444444444444 45778999999999999999999999999999996
Q ss_pred ---CC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChh
Q 040440 288 ---EP-RDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHP 327 (355)
Q Consensus 288 ---~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 327 (355)
.| ....+|..++..+...|+.++|..+++++++..|++..
T Consensus 233 ~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~~~ 276 (308)
T 2ond_A 233 GSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYE 276 (308)
T ss_dssp SSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTTS
T ss_pred cCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccccc
Confidence 44 36789999999999999999999999999999998643
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.86 E-value=1.3e-19 Score=147.98 Aligned_cols=179 Identities=10% Similarity=0.049 Sum_probs=147.1
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCch---HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH---HHH
Q 040440 148 DIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEF---EWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVE---AYH 221 (355)
Q Consensus 148 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~---~~~ 221 (355)
.+..++.+|..+...|++++|+..|+++++..|.+. .+++.+|.++...|++++|+..|+++++.+|++.. +++
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 467788999999999999999999999999988764 68999999999999999999999999999998764 788
Q ss_pred HHHHHHhccCch----------HHHHHHHHHHHHHHHHh-hccCCchHHHH-----------------HHHHHHHHHccC
Q 040440 222 GLVMAYDGSDKK----------LNEVEKRIEKAMERCKK-EKKKSDLRDFK-----------------LLIAQIKVMESK 273 (355)
Q Consensus 222 ~l~~~~~~~~~~----------~~~a~~~~~~Al~~~~~-~~~~~~~~~~~-----------------~~la~~~~~~g~ 273 (355)
.+|.++...+.. ...-.+.+++|+..+++ +...|+...+. ..+|.+|...|+
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~ 162 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGA 162 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 888888653210 00001237888888877 45555554332 578999999999
Q ss_pred HHHHHHHHHHHHHhCCCCh---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q 040440 274 HSEALRVYEELVKEEPRDF---RPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNH 326 (355)
Q Consensus 274 ~~~A~~~~~~~l~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~ 326 (355)
+++|+..|+++++.+|++. .+++.+|.++.++|++++|++.++++....|++.
T Consensus 163 ~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~ 218 (225)
T 2yhc_A 163 WVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTL 218 (225)
T ss_dssp HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCC
T ss_pred HHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCch
Confidence 9999999999999999876 6799999999999999999999999999888763
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.85 E-value=2.5e-20 Score=156.86 Aligned_cols=192 Identities=18% Similarity=0.151 Sum_probs=162.8
Q ss_pred CHHHHHHHHHHHHH--------cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHc--------CCCchHHHHHHHHHH
Q 040440 130 SYEEKEKEIEQHLA--------ANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIEL--------EPNEFEWQLLKAQVQ 193 (355)
Q Consensus 130 ~~~~A~~~~~~~l~--------~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~ 193 (355)
++++|+..++++++ .+|....++..+|.+|...|++++|+.+++++++. .|....++..+|.++
T Consensus 16 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~ 95 (283)
T 3edt_B 16 PRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLY 95 (283)
T ss_dssp CSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHH
Confidence 55666666666665 23667889999999999999999999999999987 345566899999999
Q ss_pred HHcCCHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhh--ccCCchHHHHHH
Q 040440 194 SYAGESEAAIKGFEEILRK--------DPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKE--KKKSDLRDFKLL 263 (355)
Q Consensus 194 ~~~g~~~~A~~~~~~~~~~--------~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~--~~~~~~~~~~~~ 263 (355)
...|++++|+.+|++++.. +|....++..+|.++...|+ +++|...++++++.++.. ...+....++..
T Consensus 96 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 174 (283)
T 3edt_B 96 GKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGK-AEEVEYYYRRALEIYATRLGPDDPNVAKTKNN 174 (283)
T ss_dssp HTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTC-HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 9999999999999999998 45667889999999999998 888888888888887763 335667788999
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHhC-------------------------------------------------CCChHH
Q 040440 264 IAQIKVMESKHSEALRVYEELVKEE-------------------------------------------------PRDFRP 294 (355)
Q Consensus 264 la~~~~~~g~~~~A~~~~~~~l~~~-------------------------------------------------~~~~~~ 294 (355)
+|.+|...|++++|+.+++++++.. |....+
T Consensus 175 la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (283)
T 3edt_B 175 LASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTT 254 (283)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 9999999999999999999999751 334567
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 040440 295 YLCQGIIYTLLRKKDEAEKQFEKFRRLV 322 (355)
Q Consensus 295 ~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 322 (355)
+..+|.+|...|++++|..+|+++++..
T Consensus 255 ~~~la~~~~~~g~~~~A~~~~~~al~~~ 282 (283)
T 3edt_B 255 LRSLGALYRRQGKLEAAHTLEDCASRNR 282 (283)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 8899999999999999999999998753
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.85 E-value=2.7e-20 Score=165.83 Aligned_cols=200 Identities=11% Similarity=0.010 Sum_probs=173.4
Q ss_pred hccCCHHHHHHHHHHHHHcCCCCH----HHHHHHHHHHHHccCHHHHHHHHHHHHHc------CCCchHHHHHHHHHHHH
Q 040440 126 REDVSYEEKEKEIEQHLAANPNDI----EALQTLMEVRIKSQKLVEAVDVIDRLIEL------EPNEFEWQLLKAQVQSY 195 (355)
Q Consensus 126 ~~~~~~~~A~~~~~~~l~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~la~~~~~ 195 (355)
+..+++++|+..|+++++..|++. .++..+|.+|...|++++|+.+++++++. .+....++..+|.++..
T Consensus 59 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~ 138 (411)
T 4a1s_A 59 CNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKV 138 (411)
T ss_dssp HHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHH
Confidence 444699999999999999999987 58999999999999999999999999987 45566789999999999
Q ss_pred cCCHHHHHHHHHHHHhh------CCCCHHHHHHHHHHHhccCch----------------HHHHHHHHHHHHHHHHhhcc
Q 040440 196 AGESEAAIKGFEEILRK------DPLRVEAYHGLVMAYDGSDKK----------------LNEVEKRIEKAMERCKKEKK 253 (355)
Q Consensus 196 ~g~~~~A~~~~~~~~~~------~p~~~~~~~~l~~~~~~~~~~----------------~~~a~~~~~~Al~~~~~~~~ 253 (355)
.|++++|+.+|+++++. .+....++..+|.++...|+. ++.+...+++++++......
T Consensus 139 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~ 218 (411)
T 4a1s_A 139 MGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGD 218 (411)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999998 445567889999999988762 67777777777777776655
Q ss_pred CCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCh------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 040440 254 KSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDF------RPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRN 325 (355)
Q Consensus 254 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~ 325 (355)
.+....++..+|.+|...|++++|+.+++++++..+... .++..+|.++...|++++|+.+|++++.+.+..
T Consensus 219 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 296 (411)
T 4a1s_A 219 RGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVEL 296 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHc
Confidence 566677899999999999999999999999998766433 388999999999999999999999999887643
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.6e-19 Score=153.10 Aligned_cols=188 Identities=15% Similarity=0.133 Sum_probs=160.2
Q ss_pred hccC-CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCchHHHHHHHHHHHHcCCHHHH
Q 040440 126 REDV-SYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIEL--EPNEFEWQLLKAQVQSYAGESEAA 202 (355)
Q Consensus 126 ~~~~-~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A 202 (355)
|-.. ++++|+..++. .+|.+..++..++..+...|++++|++.+++++.. +|++..+++.+|.++...|++++|
T Consensus 44 yi~~g~~~~al~~~~~---~~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~A 120 (291)
T 3mkr_A 44 YLAQRKYGVVLDEIKP---SSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAA 120 (291)
T ss_dssp HHHTTCHHHHHHHSCT---TSCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHCCCHHHHHHHhcc---cCChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 4444 89999987765 35667788899999999999999999999999876 699999999999999999999999
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHH--HHHHHccCHHHHHH
Q 040440 203 IKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIA--QIKVMESKHSEALR 279 (355)
Q Consensus 203 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la--~~~~~~g~~~~A~~ 279 (355)
++.+++ |++..++..++.++...|+ +++|++.+++ ....|+........+ .++...|++++|+.
T Consensus 121 l~~l~~-----~~~~~~~~~l~~~~~~~g~--------~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~ 187 (291)
T 3mkr_A 121 LRTLHQ-----GDSLECMAMTVQILLKLDR--------LDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYY 187 (291)
T ss_dssp HHHHTT-----CCSHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHH
T ss_pred HHHHhC-----CCCHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHH
Confidence 999988 8999999999999999999 6666666666 333555544443333 34445589999999
Q ss_pred HHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHH
Q 040440 280 VYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHPYR 329 (355)
Q Consensus 280 ~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~ 329 (355)
+|+++++.+|+++.+++.+|.++..+|++++|+..|+++++++|++....
T Consensus 188 ~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l 237 (291)
T 3mkr_A 188 IFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETL 237 (291)
T ss_dssp HHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 99999999999999999999999999999999999999999999986653
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.85 E-value=5e-20 Score=153.95 Aligned_cols=178 Identities=12% Similarity=0.080 Sum_probs=153.4
Q ss_pred hccCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCc---hHHHHHHHHHHHH----
Q 040440 126 REDVSYEEKEKEIEQHLAANPND---IEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNE---FEWQLLKAQVQSY---- 195 (355)
Q Consensus 126 ~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~la~~~~~---- 195 (355)
+..+++++|+..|+++++.+|++ ..+++.+|.+|...|++++|+..|+++++..|++ ..+++.+|.++..
T Consensus 26 ~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~ 105 (261)
T 3qky_A 26 YNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPP 105 (261)
T ss_dssp HHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCC
T ss_pred HHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhccc
Confidence 55569999999999999999999 9999999999999999999999999999998754 5689999999999
Q ss_pred ----cCCHHHHHHHHHHHHhhCCCCHHHH-----------------HHHHHHHhccCchHHHHHHHHHHHHHHHHh-hcc
Q 040440 196 ----AGESEAAIKGFEEILRKDPLRVEAY-----------------HGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKK 253 (355)
Q Consensus 196 ----~g~~~~A~~~~~~~~~~~p~~~~~~-----------------~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~ 253 (355)
.|++++|+..|+++++.+|++..+. +.+|.+|...|+ +++|+..+++ ...
T Consensus 106 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~--------~~~A~~~~~~~l~~ 177 (261)
T 3qky_A 106 YELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERREL--------YEAAAVTYEAVFDA 177 (261)
T ss_dssp TTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHH
T ss_pred ccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC--------HHHHHHHHHHHHHH
Confidence 9999999999999999999886655 788999999999 7777777766 333
Q ss_pred CCc---hHHHHHHHHHHHHHc----------cCHHHHHHHHHHHHHhCCCCh---HHHHHHHHHHHHcCCHHHH
Q 040440 254 KSD---LRDFKLLIAQIKVME----------SKHSEALRVYEELVKEEPRDF---RPYLCQGIIYTLLRKKDEA 311 (355)
Q Consensus 254 ~~~---~~~~~~~la~~~~~~----------g~~~~A~~~~~~~l~~~~~~~---~~~~~l~~~~~~~g~~~~A 311 (355)
.|+ ...++..+|.+|... |++++|+..|+++++.+|++. .+...++.++...|+++++
T Consensus 178 ~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~~~~~~~~~~ 251 (261)
T 3qky_A 178 YPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTRARQRLTELEGD 251 (261)
T ss_dssp CTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHhhhh
Confidence 444 677899999999977 999999999999999999885 4556667777776666544
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=3.7e-21 Score=146.63 Aligned_cols=145 Identities=14% Similarity=0.067 Sum_probs=72.4
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchH
Q 040440 155 LMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKL 234 (355)
Q Consensus 155 la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 234 (355)
||.++...|++++|+..+++++..+|++...++.+|.+|...|++++|++.|+++++++|+++.+|+.+|.+|...|+
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~-- 80 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEEN-- 80 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCc--
Confidence 444555555555555555555555555555555555555555555555555555555555555555555444444433
Q ss_pred HHHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHHHccCHHHHHHH-HHHHHHhCCCChHHHHHHHHHHHHcCC
Q 040440 235 NEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQIKVMESKHSEALRV-YEELVKEEPRDFRPYLCQGIIYTLLRK 307 (355)
Q Consensus 235 ~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~-~~~~l~~~~~~~~~~~~l~~~~~~~g~ 307 (355)
+++|+..+++ ....|.+..++..+|.+|...|++++|... ++++++++|+++.++..++.++...|+
T Consensus 81 ------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 81 ------TDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp ------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred ------hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 2222222222 112233333333344444445555544443 466666666666666666666666554
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.84 E-value=1.1e-19 Score=154.45 Aligned_cols=183 Identities=14% Similarity=0.090 Sum_probs=150.7
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC------chHHHHHHHHHHHHcCCHHHHH
Q 040440 130 SYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPN------EFEWQLLKAQVQSYAGESEAAI 203 (355)
Q Consensus 130 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~------~~~~~~~la~~~~~~g~~~~A~ 203 (355)
++++|+..|+++ |.+|...|++++|+..|++++++.+. ...++..+|.+|...|++++|+
T Consensus 32 ~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~ 97 (292)
T 1qqe_A 32 KFEEAADLCVQA--------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAV 97 (292)
T ss_dssp HHHHHHHHHHHH--------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 477888887776 66788999999999999999987421 2457999999999999999999
Q ss_pred HHHHHHHhhCCCC------HHHHHHHHHHHhcc-CchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHccCHHH
Q 040440 204 KGFEEILRKDPLR------VEAYHGLVMAYDGS-DKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSE 276 (355)
Q Consensus 204 ~~~~~~~~~~p~~------~~~~~~l~~~~~~~-~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 276 (355)
.+|++++++.+.. ..++..+|.+|... |+ +++|+..|++|+++............++..+|.+|..+|++++
T Consensus 98 ~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~-~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 98 DSLENAIQIFTHRGQFRRGANFKFELGEILENDLHD-YAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcC-HHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 9999999987643 45788999999996 88 8888888888888876533323335678999999999999999
Q ss_pred HHHHHHHHHHhCCCChH-------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChh
Q 040440 277 ALRVYEELVKEEPRDFR-------PYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHP 327 (355)
Q Consensus 277 A~~~~~~~l~~~~~~~~-------~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 327 (355)
|+.+|+++++..|++.. .+..+|.++..+|++++|+.+|+++++++|+...
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~ 234 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFAD 234 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC------
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC
Confidence 99999999999887643 5789999999999999999999999999997644
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.83 E-value=3.5e-18 Score=143.65 Aligned_cols=177 Identities=15% Similarity=0.122 Sum_probs=117.7
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHH----cCCHHH
Q 040440 130 SYEEKEKEIEQHLAANPNDIEALQTLMEVRIK----SQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSY----AGESEA 201 (355)
Q Consensus 130 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~ 201 (355)
++++|+..|+++++ +++..++..+|.+|.. .+++++|+.+|+++++.+ +..++..+|.+|.. .+++++
T Consensus 21 ~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~ 96 (273)
T 1ouv_A 21 DFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLLGNLYYSGQGVSQNTNK 96 (273)
T ss_dssp CHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred CHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHhCCCCcccCHHH
Confidence 77777777777776 5666777777777777 777777777777777654 56667777777777 777777
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHhc----cCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHH----ccC
Q 040440 202 AIKGFEEILRKDPLRVEAYHGLVMAYDG----SDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVM----ESK 273 (355)
Q Consensus 202 A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~----~g~ 273 (355)
|+.+|+++++. ++..+++.+|.+|.. .++ +++|++.+++.... .....+..+|.+|.. .++
T Consensus 97 A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~~--------~~~A~~~~~~a~~~-~~~~a~~~lg~~~~~~~~~~~~ 165 (273)
T 1ouv_A 97 ALQYYSKACDL--KYAEGCASLGGIYHDGKVVTRD--------FKKAVEYFTKACDL-NDGDGCTILGSLYDAGRGTPKD 165 (273)
T ss_dssp HHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCC--------HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTSSSCCC
T ss_pred HHHHHHHHHHc--CCccHHHHHHHHHHcCCCcccC--------HHHHHHHHHHHHhc-CcHHHHHHHHHHHHcCCCCCCC
Confidence 77777777765 366677777777766 666 44444444441111 145566667777776 677
Q ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCC
Q 040440 274 HSEALRVYEELVKEEPRDFRPYLCQGIIYTL----LRKKDEAEKQFEKFRRLVP 323 (355)
Q Consensus 274 ~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~l~~~p 323 (355)
+++|+.+|+++++. ++..+++.+|.+|.. .+++++|+.+|+++++..+
T Consensus 166 ~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~ 217 (273)
T 1ouv_A 166 LKKALASYDKACDL--KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN 217 (273)
T ss_dssp HHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC
Confidence 77777777777665 345666777777777 7777777777777776644
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.83 E-value=3.5e-20 Score=175.27 Aligned_cols=175 Identities=11% Similarity=0.053 Sum_probs=160.4
Q ss_pred HcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH--------HcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 040440 143 AANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLI--------ELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDP 214 (355)
Q Consensus 143 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~--------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p 214 (355)
..+|+++.+++..+ ...|++++|++.+++++ +.+|++..+++.+|.++...|++++|+..|+++++.+|
T Consensus 388 ~~~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p 464 (681)
T 2pzi_A 388 LVDPTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVG 464 (681)
T ss_dssp CCCTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc
Confidence 35788888877766 78999999999999999 88999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChH
Q 040440 215 LRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFR 293 (355)
Q Consensus 215 ~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~ 293 (355)
++..+++.+|.++...|+ +++|++.+++ ....|++..++..+|.+|...|++++ +..|+++++.+|++..
T Consensus 465 ~~~~a~~~lg~~~~~~g~--------~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~ 535 (681)
T 2pzi_A 465 WRWRLVWYRAVAELLTGD--------YDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVIS 535 (681)
T ss_dssp CCHHHHHHHHHHHHHHTC--------HHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHH
T ss_pred chHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHH
Confidence 999999999999999999 6666666666 45588999999999999999999999 9999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHH
Q 040440 294 PYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHPYR 329 (355)
Q Consensus 294 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~ 329 (355)
+|+++|.++..+|++++|+..|+++++++|++....
T Consensus 536 a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~ 571 (681)
T 2pzi_A 536 AAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTAR 571 (681)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHH
Confidence 999999999999999999999999999999875443
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.9e-19 Score=159.64 Aligned_cols=200 Identities=13% Similarity=0.051 Sum_probs=170.4
Q ss_pred hccCCHHHHHHHHHHHHHcCCCCH----HHHHHHHHHHHHccCHHHHHHHHHHHHHc------CCCchHHHHHHHHHHHH
Q 040440 126 REDVSYEEKEKEIEQHLAANPNDI----EALQTLMEVRIKSQKLVEAVDVIDRLIEL------EPNEFEWQLLKAQVQSY 195 (355)
Q Consensus 126 ~~~~~~~~A~~~~~~~l~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~la~~~~~ 195 (355)
+..+++++|+..|+++++..|++. .++..+|.++...|++++|+.++++++.. .+....++..+|.++..
T Consensus 20 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~ 99 (406)
T 3sf4_A 20 CKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKV 99 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Confidence 444699999999999999999984 67899999999999999999999999877 23345689999999999
Q ss_pred cCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHhccCch-------------------HHHHHHHHHHHHHHHHh
Q 040440 196 AGESEAAIKGFEEILRKDPLR------VEAYHGLVMAYDGSDKK-------------------LNEVEKRIEKAMERCKK 250 (355)
Q Consensus 196 ~g~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~~~~-------------------~~~a~~~~~~Al~~~~~ 250 (355)
.|++++|+..++++++..+.. ..++..+|.++...|+. ++.+...+++++.+++.
T Consensus 100 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~ 179 (406)
T 3sf4_A 100 LGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTA 179 (406)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999986532 45788999999888762 67777778888887777
Q ss_pred hccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCh------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 040440 251 EKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDF------RPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPR 324 (355)
Q Consensus 251 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~ 324 (355)
....+....++..+|.+|...|++++|+.+++++++..+... .++..+|.++...|++++|+.++++++.+.++
T Consensus 180 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 259 (406)
T 3sf4_A 180 LGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQ 259 (406)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred ccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 655666677899999999999999999999999998765443 38899999999999999999999999987654
Q ss_pred C
Q 040440 325 N 325 (355)
Q Consensus 325 ~ 325 (355)
.
T Consensus 260 ~ 260 (406)
T 3sf4_A 260 L 260 (406)
T ss_dssp T
T ss_pred C
Confidence 3
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.83 E-value=8.1e-19 Score=147.28 Aligned_cols=195 Identities=12% Similarity=0.072 Sum_probs=157.2
Q ss_pred ccccccccccchhhhhhhhhhhccC-CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCch
Q 040440 105 PVAAAATVESTNESTKDTTSAREDV-SYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEF 183 (355)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~ 183 (355)
.+...|.....+..++.. |... ++++|+..++++++.+|++..++..+|.+|...|++++|+.+|+++++.+|++.
T Consensus 69 al~~~~~~~~~~~~la~~---~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 145 (275)
T 1xnf_A 69 ALAIRPDMPEVFNYLGIY---LTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDP 145 (275)
T ss_dssp HHHHCCCCHHHHHHHHHH---HHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHcCCCcHHHHHHHHHH---HHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCh
Confidence 455566666666666665 5444 999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhh-ccCC----chH
Q 040440 184 EWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKE-KKKS----DLR 258 (355)
Q Consensus 184 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~-~~~~----~~~ 258 (355)
.....++. +...|++++|+..+++++...|.+...+. ++.++...++ .++|+..+++. ...+ ...
T Consensus 146 ~~~~~~~~-~~~~~~~~~A~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--------~~~a~~~~~~~~~~~~~~~~~~~ 215 (275)
T 1xnf_A 146 FRSLWLYL-AEQKLDEKQAKEVLKQHFEKSDKEQWGWN-IVEFYLGNIS--------EQTLMERLKADATDNTSLAEHLS 215 (275)
T ss_dssp HHHHHHHH-HHHHHCHHHHHHHHHHHHHHSCCCSTHHH-HHHHHTTSSC--------HHHHHHHHHHHCCSHHHHHHHHH
T ss_pred HHHHHHHH-HHHhcCHHHHHHHHHHHHhcCCcchHHHH-HHHHHHHhcC--------HHHHHHHHHHHhccccccccccc
Confidence 76666654 46779999999999999999988766654 6777777777 56666666652 2222 336
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHH
Q 040440 259 DFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQF 315 (355)
Q Consensus 259 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 315 (355)
.++..+|.+|...|++++|+..|++++..+|++... .+.++..+|++++|++.+
T Consensus 216 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 216 ETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVE---HRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHH---HHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHH---HHHHHHHHHHHHhhHHHH
Confidence 789999999999999999999999999999877543 477888999999999887
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.83 E-value=2.2e-19 Score=154.72 Aligned_cols=200 Identities=13% Similarity=0.048 Sum_probs=168.8
Q ss_pred hccCCHHHHHHHHHHHHHcCCCC----HHHHHHHHHHHHHccCHHHHHHHHHHHHHc------CCCchHHHHHHHHHHHH
Q 040440 126 REDVSYEEKEKEIEQHLAANPND----IEALQTLMEVRIKSQKLVEAVDVIDRLIEL------EPNEFEWQLLKAQVQSY 195 (355)
Q Consensus 126 ~~~~~~~~A~~~~~~~l~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~la~~~~~ 195 (355)
+..+++++|+..++++++.+|++ ..++..+|.++...|++++|+.+++++++. .+....++..+|.++..
T Consensus 16 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~ 95 (338)
T 3ro2_A 16 CKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKV 95 (338)
T ss_dssp HHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHH
Confidence 44569999999999999999998 467889999999999999999999999877 33445688999999999
Q ss_pred cCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHhccCch-------------------HHHHHHHHHHHHHHHHh
Q 040440 196 AGESEAAIKGFEEILRKDPLR------VEAYHGLVMAYDGSDKK-------------------LNEVEKRIEKAMERCKK 250 (355)
Q Consensus 196 ~g~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~~~~-------------------~~~a~~~~~~Al~~~~~ 250 (355)
.|++++|+..++++++..+.. ..++..++.++...|+. ++.+...+++++.+.+.
T Consensus 96 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~ 175 (338)
T 3ro2_A 96 LGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTA 175 (338)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999885432 34788999999888762 66777777777777776
Q ss_pred hccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 040440 251 EKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRD------FRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPR 324 (355)
Q Consensus 251 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~ 324 (355)
....+....++..+|.++...|++++|+.+++++++..+.. ..++..+|.++...|++++|+.++++++.+.++
T Consensus 176 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 255 (338)
T 3ro2_A 176 LGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQ 255 (338)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Confidence 65556667789999999999999999999999999875432 238899999999999999999999999987654
Q ss_pred C
Q 040440 325 N 325 (355)
Q Consensus 325 ~ 325 (355)
.
T Consensus 256 ~ 256 (338)
T 3ro2_A 256 L 256 (338)
T ss_dssp T
T ss_pred h
Confidence 3
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=2.3e-18 Score=156.16 Aligned_cols=195 Identities=16% Similarity=0.122 Sum_probs=160.8
Q ss_pred ccCCHHHHHHHHHHHHHc---------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHc--------CCCchHHHHHH
Q 040440 127 EDVSYEEKEKEIEQHLAA---------NPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIEL--------EPNEFEWQLLK 189 (355)
Q Consensus 127 ~~~~~~~A~~~~~~~l~~---------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~l 189 (355)
..+++++|++.|+++++. +|....+|.++|.+|...|++++|+.++++++++ .+....++..+
T Consensus 63 ~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~ 142 (472)
T 4g1t_A 63 LKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEE 142 (472)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHH
Confidence 345999999999999875 6778889999999999999999999999999876 23456788888
Q ss_pred HHHHHHc--CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhcc---CchHHHHHHHHHHHHHHHHhhccCCchHHHHHHH
Q 040440 190 AQVQSYA--GESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGS---DKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLI 264 (355)
Q Consensus 190 a~~~~~~--g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~---~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~l 264 (355)
|.++... ++|++|+.+|+++++++|+++.++..++.++... ++ .+.++..+++|++ ..|.+..++..+
T Consensus 143 g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~-~~~al~~~~~al~------l~p~~~~~~~~l 215 (472)
T 4g1t_A 143 GWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPP-SQNAIDPLRQAIR------LNPDNQYLKVLL 215 (472)
T ss_dssp HHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCC-CCCTHHHHHHHHH------HCSSCHHHHHHH
T ss_pred HHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchH-HHHHHHHHHHHhh------cCCcchHHHHHH
Confidence 8777665 4799999999999999999999999999886543 33 2334444445444 478888888887
Q ss_pred HHHHHH----ccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhH
Q 040440 265 AQIKVM----ESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHPY 328 (355)
Q Consensus 265 a~~~~~----~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 328 (355)
|..+.. .|++++|++++++++..+|.+..++..+|.+|...|++++|+..|+++++..|++...
T Consensus 216 ~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 283 (472)
T 4g1t_A 216 ALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYL 283 (472)
T ss_dssp HHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHH
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHH
Confidence 766654 4678899999999999999999999999999999999999999999999999998554
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.5e-18 Score=157.38 Aligned_cols=190 Identities=19% Similarity=0.123 Sum_probs=143.2
Q ss_pred cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH---ccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHH----cCCHH
Q 040440 128 DVSYEEKEKEIEQHLAANPNDIEALQTLMEVRIK---SQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSY----AGESE 200 (355)
Q Consensus 128 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~ 200 (355)
.+++++|+.+|+++++.+|++++++..++.++.. .++.++|++.++++++++|++..++..+|..+.. .|+++
T Consensus 151 ~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~ 230 (472)
T 4g1t_A 151 GNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEG 230 (472)
T ss_dssp TTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC------C
T ss_pred cccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHH
Confidence 3479999999999999999999999888887554 4667788888888888888888887777765544 45677
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHHHc--------
Q 040440 201 AAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQIKVME-------- 271 (355)
Q Consensus 201 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~~~-------- 271 (355)
+|+.++++++..+|++..++..+|.+|...|+ +++|+..+++ ....|++..++..+|.+|...
T Consensus 231 ~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~--------~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~ 302 (472)
T 4g1t_A 231 EGEKLVEEALEKAPGVTDVLRSAAKFYRRKDE--------PDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLR 302 (472)
T ss_dssp HHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHhCccHHHHHHHHHHHHHHcCc--------hHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHH
Confidence 88888888888888888888888888888888 5555555555 344677777777777776532
Q ss_pred -----------cCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 040440 272 -----------SKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRN 325 (355)
Q Consensus 272 -----------g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~ 325 (355)
+.+++|+..++++++.+|.+..++..+|.++...|++++|+.+|++++++.|++
T Consensus 303 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~ 367 (472)
T 4g1t_A 303 ENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTP 367 (472)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCC
Confidence 335677777777777777777777777877777888888888887777777654
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.82 E-value=3.6e-18 Score=143.56 Aligned_cols=180 Identities=14% Similarity=0.066 Sum_probs=160.5
Q ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHH----cCCHH
Q 040440 129 VSYEEKEKEIEQHLAANPNDIEALQTLMEVRIK----SQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSY----AGESE 200 (355)
Q Consensus 129 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~ 200 (355)
+++++|+..|+++++.+ ++.++..+|.+|.. .+++++|+.+|+++++.+ +..++..+|.+|.. .++++
T Consensus 56 ~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~ 131 (273)
T 1ouv_A 56 KNLKKAASFYAKACDLN--YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK--YAEGCASLGGIYHDGKVVTRDFK 131 (273)
T ss_dssp CCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCCHH
T ss_pred CCHHHHHHHHHHHHHCC--CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC--CccHHHHHHHHHHcCCCcccCHH
Confidence 49999999999999985 89999999999999 999999999999999874 78899999999999 99999
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHhc----cCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHH----cc
Q 040440 201 AAIKGFEEILRKDPLRVEAYHGLVMAYDG----SDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVM----ES 272 (355)
Q Consensus 201 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~----~g 272 (355)
+|+.+|+++++.+ +..++..++.+|.. .++ +++|+..+++.... .....+..+|.+|.. .+
T Consensus 132 ~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~--------~~~A~~~~~~a~~~-~~~~a~~~lg~~~~~g~~~~~ 200 (273)
T 1ouv_A 132 KAVEYFTKACDLN--DGDGCTILGSLYDAGRGTPKD--------LKKALASYDKACDL-KDSPGCFNAGNMYHHGEGATK 200 (273)
T ss_dssp HHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCC--------HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTCSSCC
T ss_pred HHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCC--------HHHHHHHHHHHHHC-CCHHHHHHHHHHHHcCCCCCc
Confidence 9999999999975 68899999999988 777 56666666552111 356888999999999 99
Q ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCC
Q 040440 273 KHSEALRVYEELVKEEPRDFRPYLCQGIIYTL----LRKKDEAEKQFEKFRRLVPRN 325 (355)
Q Consensus 273 ~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~l~~~p~~ 325 (355)
++++|+.+|+++++..+ ..+++.+|.+|.. .+++++|+.+|+++++..|++
T Consensus 201 ~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~ 255 (273)
T 1ouv_A 201 NFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKG 255 (273)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHH
T ss_pred cHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHH
Confidence 99999999999999855 8899999999999 999999999999999999864
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.1e-19 Score=142.41 Aligned_cols=167 Identities=14% Similarity=0.017 Sum_probs=138.0
Q ss_pred CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 040440 146 PNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVM 225 (355)
Q Consensus 146 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 225 (355)
|...+.+..+|..+...|++++|+..|+++++.+|++..+++.+|.++...|++++|+..|++++...| ++..+..++.
T Consensus 3 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~ 81 (176)
T 2r5s_A 3 ASPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAK 81 (176)
T ss_dssp ---CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHH
Confidence 444566888999999999999999999999999999999999999999999999999999999999999 7776655554
Q ss_pred HHhcc-CchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC--hHHHHHHHHHH
Q 040440 226 AYDGS-DKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRD--FRPYLCQGIIY 302 (355)
Q Consensus 226 ~~~~~-~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~--~~~~~~l~~~~ 302 (355)
+.... ++ ...+...+++++ ...|.+..+++.+|.++...|++++|+..|+++++.+|+. ..++..+|.++
T Consensus 82 ~~~~~~~~-~~~a~~~~~~al------~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~ 154 (176)
T 2r5s_A 82 LELHQQAA-ESPELKRLEQEL------AANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDIL 154 (176)
T ss_dssp HHHHHHHT-SCHHHHHHHHHH------HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHH
T ss_pred HHHHhhcc-cchHHHHHHHHH------HhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHH
Confidence 43221 11 112233344444 4478899999999999999999999999999999999875 56999999999
Q ss_pred HHcCCHHHHHHHHHHHHH
Q 040440 303 TLLRKKDEAEKQFEKFRR 320 (355)
Q Consensus 303 ~~~g~~~~A~~~~~~~l~ 320 (355)
...|+.++|...|++++.
T Consensus 155 ~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 155 SALGQGNAIASKYRRQLY 172 (176)
T ss_dssp HHHCSSCHHHHHHHHHHH
T ss_pred HHhCCCCcHHHHHHHHHH
Confidence 999999999999999875
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.82 E-value=8.7e-19 Score=137.80 Aligned_cols=160 Identities=14% Similarity=0.152 Sum_probs=147.5
Q ss_pred hccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHH
Q 040440 126 REDVSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKG 205 (355)
Q Consensus 126 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 205 (355)
+..+++++|+..++++++.+|++..++..+|.++...|++++|+.+++++++..|.+..++..+|.++...|++++|++.
T Consensus 19 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~ 98 (186)
T 3as5_A 19 AKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPL 98 (186)
T ss_dssp HHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHH
Confidence 33459999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 040440 206 FEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQIKVMESKHSEALRVYEEL 284 (355)
Q Consensus 206 ~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 284 (355)
++++++..|++...+..+|.++...|+ +++|++.+++ ....+....++..+|.++...|++++|+.+++++
T Consensus 99 ~~~~~~~~~~~~~~~~~~a~~~~~~~~--------~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 170 (186)
T 3as5_A 99 LIKVAEANPINFNVRFRLGVALDNLGR--------FDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKA 170 (186)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhcCcHhHHHHHHHHHHHHHcCc--------HHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999999999999999999999999 6677766666 4456778899999999999999999999999999
Q ss_pred HHhCCCChH
Q 040440 285 VKEEPRDFR 293 (355)
Q Consensus 285 l~~~~~~~~ 293 (355)
++.+|++..
T Consensus 171 ~~~~~~~~~ 179 (186)
T 3as5_A 171 NELDEGASV 179 (186)
T ss_dssp HHHHHCCCG
T ss_pred HHcCCCchh
Confidence 998886643
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=1.8e-19 Score=137.26 Aligned_cols=138 Identities=9% Similarity=0.030 Sum_probs=124.9
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 040440 130 SYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEI 209 (355)
Q Consensus 130 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 209 (355)
++++|+..+++++..+|++...++.+|.+|...|++++|+++|+++++++|++..+|..+|.++...|++++|+..|+++
T Consensus 12 ~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~a 91 (150)
T 4ga2_A 12 DVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECYRRS 91 (150)
T ss_dssp HHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHccC
Q 040440 210 LRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVMESK 273 (355)
Q Consensus 210 ~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 273 (355)
++++|+++.+++.+|.++...|+..+.+..++++|+++ .|.+..++..++.++...|+
T Consensus 92 l~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l------~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 92 VELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL------FPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH------STTCHHHHHHHHHHHHTCCC
T ss_pred HHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh------CcCCHHHHHHHHHHHHHhCc
Confidence 99999999999999999999998223333334555544 78999999999999888775
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=1.1e-18 Score=147.77 Aligned_cols=169 Identities=12% Similarity=0.024 Sum_probs=151.9
Q ss_pred cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 040440 144 ANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGL 223 (355)
Q Consensus 144 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 223 (355)
..|++.+.+..+|..+...|++++|+..|+++++.+|++..+++.+|.++...|++++|+..+++++..+|+........
T Consensus 112 ~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~ 191 (287)
T 3qou_A 112 VLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVA 191 (287)
T ss_dssp HSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHH
T ss_pred HcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHH
Confidence 34899999999999999999999999999999999999999999999999999999999999999999999766666666
Q ss_pred HHHHhccCchHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC--hHHHHHHHH
Q 040440 224 VMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRD--FRPYLCQGI 300 (355)
Q Consensus 224 ~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~--~~~~~~l~~ 300 (355)
+..+...++ .++|+..+++ ....|++..+++.+|.+|...|++++|+..|+++++.+|++ ..++..++.
T Consensus 192 ~~~l~~~~~--------~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~ 263 (287)
T 3qou_A 192 QIELLXQAA--------DTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQE 263 (287)
T ss_dssp HHHHHHHHT--------SCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHH
T ss_pred HHHHHhhcc--------cCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHH
Confidence 666666666 4455555555 45589999999999999999999999999999999999988 889999999
Q ss_pred HHHHcCCHHHHHHHHHHHHH
Q 040440 301 IYTLLRKKDEAEKQFEKFRR 320 (355)
Q Consensus 301 ~~~~~g~~~~A~~~~~~~l~ 320 (355)
++...|+.++|...|++++.
T Consensus 264 ~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 264 ILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHcCCCCcHHHHHHHHHH
Confidence 99999999999999999875
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.81 E-value=6.4e-19 Score=155.63 Aligned_cols=192 Identities=11% Similarity=0.030 Sum_probs=152.9
Q ss_pred hccCCHHHHHHHHHHHHHc---CCC---CHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCc-------hHHHHHHHHH
Q 040440 126 REDVSYEEKEKEIEQHLAA---NPN---DIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNE-------FEWQLLKAQV 192 (355)
Q Consensus 126 ~~~~~~~~A~~~~~~~l~~---~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-------~~~~~~la~~ 192 (355)
+..+++++|+..++++++. .++ ...++..+|.+|...|++++|+.+++++++..+.. ..++..+|.+
T Consensus 114 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~ 193 (383)
T 3ulq_A 114 LDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATN 193 (383)
T ss_dssp HHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHH
Confidence 3445999999999999986 233 46789999999999999999999999999874332 3478999999
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHH
Q 040440 193 QSYAGESEAAIKGFEEILRKDPLR------VEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQ 266 (355)
Q Consensus 193 ~~~~g~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~ 266 (355)
|...|++++|+.+|+++++..+.. ..++..+|.+|...|+ ++.|...+++|+++.+.....+....++..+|.
T Consensus 194 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~ 272 (383)
T 3ulq_A 194 FLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQ-YEDAIPYFKRAIAVFEESNILPSLPQAYFLITQ 272 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHhhccchhHHHHHHHHHH
Confidence 999999999999999999885432 2478899999999998 888888888888887775555777889999999
Q ss_pred HHHHccCHHHHHHHHHHHHHhCC-----CChHHHHHHHHHHHHcCC---HHHHHHHHHHH
Q 040440 267 IKVMESKHSEALRVYEELVKEEP-----RDFRPYLCQGIIYTLLRK---KDEAEKQFEKF 318 (355)
Q Consensus 267 ~~~~~g~~~~A~~~~~~~l~~~~-----~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~ 318 (355)
+|...|++++|+.+++++++..+ .....+..+|.++...|+ +++|+.++++.
T Consensus 273 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~ 332 (383)
T 3ulq_A 273 IHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK 332 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC
Confidence 99999999999999999997632 222224456666666666 45555554443
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.1e-18 Score=128.64 Aligned_cols=118 Identities=15% Similarity=0.121 Sum_probs=83.5
Q ss_pred HcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 040440 143 AANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHG 222 (355)
Q Consensus 143 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 222 (355)
.++|+..+++..+|..|++.|+|++|+..|+++++.+|.+..+|..+|.++...|++++|+..|+++++++|++..+++.
T Consensus 7 ~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~ 86 (126)
T 4gco_A 7 YINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIR 86 (126)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 35666677777777777777777777777777777777777777777777777777777777777777777766666555
Q ss_pred HHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 040440 223 LVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGII 301 (355)
Q Consensus 223 l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~ 301 (355)
+|.++ ..+|++++|+..|+++++++|++..++..++.+
T Consensus 87 lg~~~-----------------------------------------~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 87 KAACL-----------------------------------------VAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHHHH-----------------------------------------HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHH-----------------------------------------HHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 44444 445666777777777777777777777666655
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.80 E-value=3.4e-19 Score=151.43 Aligned_cols=189 Identities=13% Similarity=0.047 Sum_probs=149.5
Q ss_pred CCHHHHHHHHHHHHHcCCC------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCc------hHHHHHHHHHHHHc
Q 040440 129 VSYEEKEKEIEQHLAANPN------DIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNE------FEWQLLKAQVQSYA 196 (355)
Q Consensus 129 ~~~~~A~~~~~~~l~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~------~~~~~~la~~~~~~ 196 (355)
+++++|+..|+++++..+. ...++..+|.+|...|++++|+.+|++++++.+.. ..++..+|.+|...
T Consensus 51 g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~ 130 (292)
T 1qqe_A 51 KELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILEND 130 (292)
T ss_dssp TCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 4999999999999986432 26789999999999999999999999999986532 35788999999996
Q ss_pred -CCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hccCCc-------hHHHH
Q 040440 197 -GESEAAIKGFEEILRKDPLR------VEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSD-------LRDFK 261 (355)
Q Consensus 197 -g~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~-------~~~~~ 261 (355)
|++++|+.+|++++++.|.+ ..++..+|.++...|+ +++|+..+++ ....+. ....+
T Consensus 131 lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~--------~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 202 (292)
T 1qqe_A 131 LHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQ--------YIEASDIYSKLIKSSMGNRLSQWSLKDYF 202 (292)
T ss_dssp TCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHTTSSCTTTGGGHHHHH
T ss_pred hcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCC--------HHHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 99999999999999997754 4678899999999999 6666666666 222222 22368
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCChH-----HHHHHHHHHH--HcCCHHHHHHHHHHHHHhCCCC
Q 040440 262 LLIAQIKVMESKHSEALRVYEELVKEEPRDFR-----PYLCQGIIYT--LLRKKDEAEKQFEKFRRLVPRN 325 (355)
Q Consensus 262 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~-----~~~~l~~~~~--~~g~~~~A~~~~~~~l~~~p~~ 325 (355)
..+|.++...|++++|+..|+++++++|.... .+..++..+. ..+++++|+..|++++.++|..
T Consensus 203 ~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~ 273 (292)
T 1qqe_A 203 LKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWK 273 (292)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHH
Confidence 88999999999999999999999999887554 3445566554 4578999999999988887754
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.6e-18 Score=148.00 Aligned_cols=177 Identities=18% Similarity=0.154 Sum_probs=156.7
Q ss_pred CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHc--------CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---
Q 040440 145 NPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIEL--------EPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKD--- 213 (355)
Q Consensus 145 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--- 213 (355)
+|....++..+|.++...|++++|+.+++++++. .+....++..+|.++...|++++|+.+|++++...
T Consensus 23 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 102 (311)
T 3nf1_A 23 IPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKT 102 (311)
T ss_dssp SCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 5667888999999999999999999999999985 55667789999999999999999999999999873
Q ss_pred -----CCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhh--ccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 040440 214 -----PLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKE--KKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVK 286 (355)
Q Consensus 214 -----p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 286 (355)
+....++..+|.++...|+ +++|...++++++..+.. ...+....++..+|.++...|++++|+.+|+++++
T Consensus 103 ~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 181 (311)
T 3nf1_A 103 LGKDHPAVAATLNNLAVLYGKRGK-YKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALE 181 (311)
T ss_dssp HCTTCHHHHHHHHHHHHHHHTTTC-HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred hCCCChHHHHHHHHHHHHHHHcCc-HHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4556788999999999998 888888888888887764 45567778899999999999999999999999998
Q ss_pred h--------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 040440 287 E--------EPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLV 322 (355)
Q Consensus 287 ~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 322 (355)
. .|....++..+|.++...|++++|+.+++++++..
T Consensus 182 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 225 (311)
T 3nf1_A 182 IYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRA 225 (311)
T ss_dssp HHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 7 56667789999999999999999999999999864
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.80 E-value=7e-19 Score=156.02 Aligned_cols=196 Identities=15% Similarity=0.062 Sum_probs=161.5
Q ss_pred cCCHHHHHHHHHHHHHc------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCc------hHHHHHHHHHHHH
Q 040440 128 DVSYEEKEKEIEQHLAA------NPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNE------FEWQLLKAQVQSY 195 (355)
Q Consensus 128 ~~~~~~A~~~~~~~l~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~------~~~~~~la~~~~~ 195 (355)
.+++++|+..+++++.. .|....++..+|.++...|++++|+.+++++++..+.. ..++..+|.++..
T Consensus 60 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~ 139 (406)
T 3sf4_A 60 LHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHA 139 (406)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHH
Confidence 34999999999998875 34457788999999999999999999999998875532 3478899999999
Q ss_pred cCC--------------------HHHHHHHHHHHHhhC------CCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHH
Q 040440 196 AGE--------------------SEAAIKGFEEILRKD------PLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCK 249 (355)
Q Consensus 196 ~g~--------------------~~~A~~~~~~~~~~~------p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~ 249 (355)
.|+ +++|+.++++++... +....++..+|.++...|+ ++.+...+++++++..
T Consensus 140 ~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~~ 218 (406)
T 3sf4_A 140 KGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGN-FRDAVIAHEQRLLIAK 218 (406)
T ss_dssp HHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTB-HHHHHHHHHHHHHHHH
T ss_pred cCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccC-HHHHHHHHHHHHHHHH
Confidence 999 999999999988762 3334578899999999988 7888888888888877
Q ss_pred hhccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 040440 250 KEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRD------FRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVP 323 (355)
Q Consensus 250 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p 323 (355)
..........++..+|.+|...|++++|+.++++++...+.. ..++..+|.++...|++++|+.++++++++.+
T Consensus 219 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 298 (406)
T 3sf4_A 219 EFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ 298 (406)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence 754444556678899999999999999999999998876644 66888999999999999999999999988754
Q ss_pred C
Q 040440 324 R 324 (355)
Q Consensus 324 ~ 324 (355)
.
T Consensus 299 ~ 299 (406)
T 3sf4_A 299 E 299 (406)
T ss_dssp H
T ss_pred h
Confidence 4
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.80 E-value=5.4e-19 Score=157.39 Aligned_cols=196 Identities=13% Similarity=0.077 Sum_probs=164.5
Q ss_pred cCCHHHHHHHHHHHHHc------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHc------CCCchHHHHHHHHHHHH
Q 040440 128 DVSYEEKEKEIEQHLAA------NPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIEL------EPNEFEWQLLKAQVQSY 195 (355)
Q Consensus 128 ~~~~~~A~~~~~~~l~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~la~~~~~ 195 (355)
.+++++|+..++++++. .+....++..+|.+|...|++++|+.+++++++. .+....++..+|.++..
T Consensus 99 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~ 178 (411)
T 4a1s_A 99 LGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHA 178 (411)
T ss_dssp HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH
Confidence 34999999999999886 5667788999999999999999999999999887 44555688999999999
Q ss_pred cCC-----------------HHHHHHHHHHHHhhC------CCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhc
Q 040440 196 AGE-----------------SEAAIKGFEEILRKD------PLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEK 252 (355)
Q Consensus 196 ~g~-----------------~~~A~~~~~~~~~~~------p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~ 252 (355)
.|+ +++|+.++++++++. +....++..+|.++...|+ +++|...+++++++.....
T Consensus 179 ~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~~~~~ 257 (411)
T 4a1s_A 179 KGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGD-FQAAIEHHQERLRIAREFG 257 (411)
T ss_dssp HHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHT
T ss_pred cCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC-hHHHHHHHHHHHHHHHhcC
Confidence 999 999999999988763 2334578899999999998 7788888888888777644
Q ss_pred cCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 040440 253 KKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRD------FRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPR 324 (355)
Q Consensus 253 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~ 324 (355)
........+..+|.+|...|++++|+.+|++++...+.. ..++..+|.++...|++++|+.++++++.+.++
T Consensus 258 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 335 (411)
T 4a1s_A 258 DRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQE 335 (411)
T ss_dssp CHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 444455678899999999999999999999999876633 577889999999999999999999999887543
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.80 E-value=2.1e-17 Score=152.24 Aligned_cols=187 Identities=13% Similarity=0.045 Sum_probs=164.9
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-------ccCHH-------HHHHHHHHHHH-cCCCchHHHHHHHHHHHHc
Q 040440 132 EEKEKEIEQHLAANPNDIEALQTLMEVRIK-------SQKLV-------EAVDVIDRLIE-LEPNEFEWQLLKAQVQSYA 196 (355)
Q Consensus 132 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~-------~g~~~-------~A~~~~~~~~~-~~~~~~~~~~~la~~~~~~ 196 (355)
.+++..|++++..+|.++.+|..+|..+.. .|+++ +|+.+|+++++ ..|++...|..++.++...
T Consensus 255 ~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~ 334 (530)
T 2ooe_A 255 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 334 (530)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 478899999999999999999999999986 79987 99999999997 7999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhCCCCH-HHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHHHH-HHHccC
Q 040440 197 GESEAAIKGFEEILRKDPLRV-EAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQI-KVMESK 273 (355)
Q Consensus 197 g~~~~A~~~~~~~~~~~p~~~-~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~-~~~~g~ 273 (355)
|++++|+..|+++++..|.+. .+|..++.++.+.|+ +++|++++++ ....+.....+...+.+ +...|+
T Consensus 335 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~--------~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~ 406 (530)
T 2ooe_A 335 MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEG--------IKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKD 406 (530)
T ss_dssp TCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcC--------HHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCC
Confidence 999999999999999999885 689999999888887 6667777666 33445555566665655 346899
Q ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q 040440 274 HSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNH 326 (355)
Q Consensus 274 ~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~ 326 (355)
+++|..+|+++++.+|+++.+|..++.++...|+.++|..+|++++...|.++
T Consensus 407 ~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~ 459 (530)
T 2ooe_A 407 KSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP 459 (530)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCG
T ss_pred hhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCH
Confidence 99999999999999999999999999999999999999999999999877654
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=6.8e-18 Score=156.84 Aligned_cols=163 Identities=10% Similarity=0.028 Sum_probs=133.4
Q ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHH
Q 040440 129 VSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEE 208 (355)
Q Consensus 129 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 208 (355)
+++++|++.++++++.+|++..++..+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|++.|++
T Consensus 3 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 82 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQ 82 (568)
T ss_dssp ------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHHHc---cCHHHHHHHHHHH
Q 040440 209 ILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQIKVME---SKHSEALRVYEEL 284 (355)
Q Consensus 209 ~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~~~---g~~~~A~~~~~~~ 284 (355)
+++.+|++..++..+|.++...|+ +++|++.+++ ....+.+..++..+|.++... |++++|++.|+++
T Consensus 83 al~~~p~~~~~~~~la~~~~~~g~--------~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 83 ASDAAPEHPGIALWLGHALEDAGQ--------AEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHhcCCCCHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 999999999999999999999999 6666666666 445788888999999999999 9999999999999
Q ss_pred HHhCCCChHHHHHHH
Q 040440 285 VKEEPRDFRPYLCQG 299 (355)
Q Consensus 285 l~~~~~~~~~~~~l~ 299 (355)
++.+|.+...+..++
T Consensus 155 l~~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 155 VAQGVGAVEPFAFLS 169 (568)
T ss_dssp HHHTCCCSCHHHHTT
T ss_pred HhcCCcccChHHHhC
Confidence 999998888777766
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.79 E-value=5.1e-18 Score=145.21 Aligned_cols=197 Identities=11% Similarity=-0.018 Sum_probs=157.3
Q ss_pred CHHHHHHHHHHHHHcCC--------CC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCc------hHHHHHHHHH
Q 040440 130 SYEEKEKEIEQHLAANP--------ND---IEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNE------FEWQLLKAQV 192 (355)
Q Consensus 130 ~~~~A~~~~~~~l~~~p--------~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~------~~~~~~la~~ 192 (355)
++++|.++++++.+..+ +. ...+...+.+|...|++++|+..|+++++..+.. ..++..+|.+
T Consensus 6 ~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~ 85 (307)
T 2ifu_A 6 KISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMM 85 (307)
T ss_dssp HHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 55666666666654322 11 2245556788999999999999999999875422 3478899999
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCC--C----HHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHH
Q 040440 193 QSYAGESEAAIKGFEEILRKDPL--R----VEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQ 266 (355)
Q Consensus 193 ~~~~g~~~~A~~~~~~~~~~~p~--~----~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~ 266 (355)
|...|++++|+.+|++++++.+. + ..++..+|.+|.. |+ ++.|+..|++|++++...........++..+|.
T Consensus 86 ~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~-~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~ 163 (307)
T 2ifu_A 86 LKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LD-LSKAVHLYQQAAAVFENEERLRQAAELIGKASR 163 (307)
T ss_dssp HHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CC-HHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 99999999999999999988532 2 3568899999988 77 888889999999888774443445678999999
Q ss_pred HHHHccCHHHHHHHHHHHHHhCCCC------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHH
Q 040440 267 IKVMESKHSEALRVYEELVKEEPRD------FRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHPYR 329 (355)
Q Consensus 267 ~~~~~g~~~~A~~~~~~~l~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~ 329 (355)
+|..+|++++|+.+|++++...+.+ ...+..+|.++..+|++++|+.+|++++ ++|+.....
T Consensus 164 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~ 231 (307)
T 2ifu_A 164 LLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGSE 231 (307)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTSH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCCH
Confidence 9999999999999999999876543 3478889999999999999999999999 999764433
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.79 E-value=9.3e-19 Score=144.49 Aligned_cols=194 Identities=9% Similarity=-0.005 Sum_probs=169.7
Q ss_pred hccCCHHHHHHHHHHHHHcCCCCHHHHHHH-------HHHHHHccCHHHHHHHHHHHHHcCCCch---------------
Q 040440 126 REDVSYEEKEKEIEQHLAANPNDIEALQTL-------MEVRIKSQKLVEAVDVIDRLIELEPNEF--------------- 183 (355)
Q Consensus 126 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l-------a~~~~~~g~~~~A~~~~~~~~~~~~~~~--------------- 183 (355)
+...++.+|.+.|.++++.+|+..++|..+ +.++...++..+++..+++.+.+.|...
T Consensus 17 ~~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~ 96 (282)
T 4f3v_A 17 MLPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITY 96 (282)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEE
T ss_pred ccCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccc
Confidence 334599999999999999999999999999 8999999999999999999999766433
Q ss_pred ------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCch
Q 040440 184 ------EWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDL 257 (355)
Q Consensus 184 ------~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~ 257 (355)
+.+..++.++...|+|++|.+.|+.++...|++. ..+.++.++...++ +++|+..++.....++.
T Consensus 97 ~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r--------~~dA~~~l~~a~~~~d~ 167 (282)
T 4f3v_A 97 PVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAER--------WTDVIDQVKSAGKWPDK 167 (282)
T ss_dssp ECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTC--------HHHHHHHHTTGGGCSCH
T ss_pred ccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCC--------HHHHHHHHHHhhccCCc
Confidence 3455688999999999999999999999999888 99999999999999 99999998875444322
Q ss_pred ---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHH
Q 040440 258 ---RDFKLLIAQIKVMESKHSEALRVYEELVKEE--PR-DFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHPYR 329 (355)
Q Consensus 258 ---~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~--~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~ 329 (355)
..+++.+|.++..+|++++|+..|++++... |. ...+++.+|.++.++|+.++|...|++++..+|+ ....
T Consensus 168 ~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~ 244 (282)
T 4f3v_A 168 FLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVA 244 (282)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHH
T ss_pred ccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHH
Confidence 4579999999999999999999999998544 44 5578999999999999999999999999999998 5543
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.4e-18 Score=149.63 Aligned_cols=196 Identities=15% Similarity=0.064 Sum_probs=165.1
Q ss_pred cCCHHHHHHHHHHHHHc------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCc------hHHHHHHHHHHHH
Q 040440 128 DVSYEEKEKEIEQHLAA------NPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNE------FEWQLLKAQVQSY 195 (355)
Q Consensus 128 ~~~~~~A~~~~~~~l~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~------~~~~~~la~~~~~ 195 (355)
.+++++|+..++++++. .+....++..+|.++...|++++|+..++++++..+.. ..++..+|.++..
T Consensus 56 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~ 135 (338)
T 3ro2_A 56 LHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHA 135 (338)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH
Confidence 34999999999999875 44457789999999999999999999999998874432 2378899999999
Q ss_pred cCC--------------------HHHHHHHHHHHHhhC------CCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHH
Q 040440 196 AGE--------------------SEAAIKGFEEILRKD------PLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCK 249 (355)
Q Consensus 196 ~g~--------------------~~~A~~~~~~~~~~~------p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~ 249 (355)
.|+ +++|+..+++++... +....++..++.++...|+ ++.+...++++++...
T Consensus 136 ~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~a~~~~~ 214 (338)
T 3ro2_A 136 KGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGN-FRDAVIAHEQRLLIAK 214 (338)
T ss_dssp HHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHH
T ss_pred cCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHH
Confidence 999 999999999988762 2334578899999999998 8888888888888877
Q ss_pred hhccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 040440 250 KEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRD------FRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVP 323 (355)
Q Consensus 250 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p 323 (355)
...........+..+|.++...|++++|+.++++++...+.. ..++..+|.++...|++++|..++++++.+.+
T Consensus 215 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 294 (338)
T 3ro2_A 215 EFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ 294 (338)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 755555556689999999999999999999999999876544 67889999999999999999999999998765
Q ss_pred C
Q 040440 324 R 324 (355)
Q Consensus 324 ~ 324 (355)
.
T Consensus 295 ~ 295 (338)
T 3ro2_A 295 E 295 (338)
T ss_dssp H
T ss_pred h
Confidence 3
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=6.1e-18 Score=157.16 Aligned_cols=157 Identities=13% Similarity=-0.005 Sum_probs=129.5
Q ss_pred ccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHH
Q 040440 162 SQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRI 241 (355)
Q Consensus 162 ~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~ 241 (355)
.|++++|+..|+++++.+|++..++..+|.++...|++++|++.|+++++.+|++..++..+|.++...|+ +
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~--------~ 73 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQR--------H 73 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTC--------H
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC--------H
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999 6
Q ss_pred HHHHHHHHh-hccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc---CCHHHHHHHHHH
Q 040440 242 EKAMERCKK-EKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLL---RKKDEAEKQFEK 317 (355)
Q Consensus 242 ~~Al~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~ 317 (355)
++|++.+++ ....+.+...+..+|.+|...|++++|++.|+++++.+|++..++..+|.++... |++++|.+.+++
T Consensus 74 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~ 153 (568)
T 2vsy_A 74 AEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRA 153 (568)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHH
Confidence 666666666 4457888999999999999999999999999999999999999999999999999 999999999999
Q ss_pred HHHhCCCCh
Q 040440 318 FRRLVPRNH 326 (355)
Q Consensus 318 ~l~~~p~~~ 326 (355)
+++.+|++.
T Consensus 154 al~~~p~~~ 162 (568)
T 2vsy_A 154 AVAQGVGAV 162 (568)
T ss_dssp HHHHTCCCS
T ss_pred HHhcCCccc
Confidence 999999863
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.78 E-value=4e-18 Score=150.49 Aligned_cols=171 Identities=11% Similarity=0.048 Sum_probs=149.9
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHc---CCC---chHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-------CHH
Q 040440 152 LQTLMEVRIKSQKLVEAVDVIDRLIEL---EPN---EFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPL-------RVE 218 (355)
Q Consensus 152 ~~~la~~~~~~g~~~~A~~~~~~~~~~---~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~-------~~~ 218 (355)
++.+|..+...|++++|+.+|+++++. .++ ...++..+|.+|...|++++|+.++++++++.+. ...
T Consensus 106 ~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 185 (383)
T 3ulq_A 106 NFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQ 185 (383)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHH
Confidence 445999999999999999999999987 233 4468999999999999999999999999998443 245
Q ss_pred HHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHH-----hC-CCCh
Q 040440 219 AYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVK-----EE-PRDF 292 (355)
Q Consensus 219 ~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~-----~~-~~~~ 292 (355)
++..+|.+|...|+ ++.|...+++|+++.++....+....++..+|.+|...|++++|+.+|+++++ .+ |...
T Consensus 186 ~~~~lg~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 264 (383)
T 3ulq_A 186 CHSLFATNFLDLKQ-YEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLP 264 (383)
T ss_dssp HHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHH
T ss_pred HHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHH
Confidence 78899999999998 88888899999988887655566667899999999999999999999999998 45 6678
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 040440 293 RPYLCQGIIYTLLRKKDEAEKQFEKFRRLVP 323 (355)
Q Consensus 293 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p 323 (355)
.++..+|.++...|++++|..++++++++.+
T Consensus 265 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 295 (383)
T 3ulq_A 265 QAYFLITQIHYKLGKIDKAHEYHSKGMAYSQ 295 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 8899999999999999999999999998754
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.78 E-value=6.4e-18 Score=124.44 Aligned_cols=118 Identities=17% Similarity=0.246 Sum_probs=99.4
Q ss_pred HHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhcc
Q 040440 174 RLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKK 253 (355)
Q Consensus 174 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~ 253 (355)
++..++|+....+..+|..++..|+|++|++.|+++++.+|++..++..+|.+
T Consensus 4 r~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~--------------------------- 56 (126)
T 4gco_A 4 RLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAAC--------------------------- 56 (126)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH---------------------------
T ss_pred HHHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhH---------------------------
Confidence 34456788888888889889999999999999999888888877766655544
Q ss_pred CCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHH
Q 040440 254 KSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHPYREYF 332 (355)
Q Consensus 254 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~ 332 (355)
|..+|++++|+..|+++++++|++..+|+.+|.++..+|++++|+..|+++++++|++......+
T Consensus 57 --------------~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l 121 (126)
T 4gco_A 57 --------------LTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGV 121 (126)
T ss_dssp --------------HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred --------------HHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHH
Confidence 45668889999999999999999999999999999999999999999999999999997665443
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.77 E-value=2.2e-17 Score=134.62 Aligned_cols=159 Identities=16% Similarity=0.174 Sum_probs=136.4
Q ss_pred hccCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchH---HHHHHHHHHHH----
Q 040440 126 REDVSYEEKEKEIEQHLAANPND---IEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFE---WQLLKAQVQSY---- 195 (355)
Q Consensus 126 ~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~la~~~~~---- 195 (355)
+..+++++|+..|+++++..|++ ..+++.+|.+|...|++++|+..|+++++.+|++.. +++.+|.++..
T Consensus 15 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~ 94 (225)
T 2yhc_A 15 LQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDS 94 (225)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC-
T ss_pred HHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhh
Confidence 55569999999999999998876 478999999999999999999999999999998764 78899988876
Q ss_pred --------------cCCHHHHHHHHHHHHhhCCCCHHHH-----------------HHHHHHHhccCchHHHHHHHHHHH
Q 040440 196 --------------AGESEAAIKGFEEILRKDPLRVEAY-----------------HGLVMAYDGSDKKLNEVEKRIEKA 244 (355)
Q Consensus 196 --------------~g~~~~A~~~~~~~~~~~p~~~~~~-----------------~~l~~~~~~~~~~~~~a~~~~~~A 244 (355)
.|++++|+..|+++++.+|++..++ ..+|.+|...|+ +++|
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~--------~~~A 166 (225)
T 2yhc_A 95 ALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGA--------WVAV 166 (225)
T ss_dssp -------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--------HHHH
T ss_pred hhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc--------HHHH
Confidence 5799999999999999999987554 567888888888 7777
Q ss_pred HHHHHh-hccCCch---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCh
Q 040440 245 MERCKK-EKKKSDL---RDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDF 292 (355)
Q Consensus 245 l~~~~~-~~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~ 292 (355)
+..+++ +...|+. ..++..+|.+|.++|++++|++.++++....|++.
T Consensus 167 ~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~ 218 (225)
T 2yhc_A 167 VNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTL 218 (225)
T ss_dssp HHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCC
T ss_pred HHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCch
Confidence 777766 3444544 46799999999999999999999999999888654
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=99.77 E-value=1.8e-18 Score=131.11 Aligned_cols=115 Identities=17% Similarity=0.132 Sum_probs=91.6
Q ss_pred HHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHH
Q 040440 170 DVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCK 249 (355)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~ 249 (355)
..+++++.++|++..+++.+|.++...|++++|+..|++++..+|+++.+|+.+|.++
T Consensus 23 ~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~---------------------- 80 (151)
T 3gyz_A 23 ATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIY---------------------- 80 (151)
T ss_dssp CCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH----------------------
T ss_pred CCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH----------------------
Confidence 4456666777777788888888888888888888888888888887777666555444
Q ss_pred hhccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 040440 250 KEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRN 325 (355)
Q Consensus 250 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~ 325 (355)
...|++++|+..|+++++++|+++.+|+++|.+|..+|++++|+..|++++++.|+.
T Consensus 81 -------------------~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~ 137 (151)
T 3gyz_A 81 -------------------QIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDE 137 (151)
T ss_dssp -------------------HHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCH
T ss_pred -------------------HHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCH
Confidence 556778888888888888888888888888888888888888888888888888864
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=5.7e-16 Score=131.49 Aligned_cols=189 Identities=10% Similarity=0.042 Sum_probs=146.4
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccC----------HHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcC--C
Q 040440 131 YEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQK----------LVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAG--E 198 (355)
Q Consensus 131 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g--~ 198 (355)
-++|+..+++++..+|++..+|+..+.+....|+ +++++.++++++..+|++..+|...+.++...| +
T Consensus 46 s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~ 125 (331)
T 3dss_A 46 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPN 125 (331)
T ss_dssp SHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCC
T ss_pred CHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCccc
Confidence 3578888888888888888888888888877665 678888888888888888888888888888888 4
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHc-------
Q 040440 199 SEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVME------- 271 (355)
Q Consensus 199 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~~------- 271 (355)
+++++.+++++++.+|.|..+|...+.+....|...++++..+++++ ..++.+..+|..++.++...
T Consensus 126 ~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I------~~~p~N~SAW~~R~~ll~~l~~~~~~~ 199 (331)
T 3dss_A 126 WARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLI------TRNFSNYSSWHYRSCLLPQLHPQPDSG 199 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHH------HHCSCCHHHHHHHHHHHHHHSCCC---
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHH------HHCCCCHHHHHHHHHHHHHhhhccccc
Confidence 78888888888888888888888888888777763344444444444 34788888888888877766
Q ss_pred -------cCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHHhCCCC
Q 040440 272 -------SKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLL-----------RKKDEAEKQFEKFRRLVPRN 325 (355)
Q Consensus 272 -------g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~~l~~~p~~ 325 (355)
+.++++++++++++..+|+|..+|+.+..++... +.++++++.+++++++.|++
T Consensus 200 ~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~ 271 (331)
T 3dss_A 200 PQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPEN 271 (331)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred cccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCccc
Confidence 5578888888888888888888887665555544 35778888888888888876
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.8e-16 Score=127.93 Aligned_cols=175 Identities=13% Similarity=0.040 Sum_probs=153.6
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcC----CHHHHHHHHHH
Q 040440 133 EKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAG----ESEAAIKGFEE 208 (355)
Q Consensus 133 ~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g----~~~~A~~~~~~ 208 (355)
+|++.|+++.+. .++.+++.+|.+|...+++++|+.+|+++++. .++.+++.+|.+|.. + ++++|+.+|++
T Consensus 4 eA~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~ 78 (212)
T 3rjv_A 4 EPGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAEK 78 (212)
T ss_dssp CTTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHH
T ss_pred hHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHH
Confidence 467888888875 78999999999999999999999999999875 578899999999988 7 99999999999
Q ss_pred HHhhCCCCHHHHHHHHHHHhc----cCchHHHHHHHHHHHHHHHHhh-ccCC--chHHHHHHHHHHHHH----ccCHHHH
Q 040440 209 ILRKDPLRVEAYHGLVMAYDG----SDKKLNEVEKRIEKAMERCKKE-KKKS--DLRDFKLLIAQIKVM----ESKHSEA 277 (355)
Q Consensus 209 ~~~~~p~~~~~~~~l~~~~~~----~~~~~~~a~~~~~~Al~~~~~~-~~~~--~~~~~~~~la~~~~~----~g~~~~A 277 (355)
+.+ +.++.+++.+|.+|.. .++ +++|++++++. ...+ .....+..+|.+|.. .+++++|
T Consensus 79 A~~--~g~~~a~~~Lg~~y~~g~g~~~d--------~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A 148 (212)
T 3rjv_A 79 AVE--AGSKSGEIVLARVLVNRQAGATD--------VAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKA 148 (212)
T ss_dssp HHH--TTCHHHHHHHHHHHTCGGGSSCC--------HHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHH
T ss_pred HHH--CCCHHHHHHHHHHHHcCCCCccC--------HHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 965 5789999999999987 667 88888888883 3333 348899999999999 8899999
Q ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHHc-C-----CHHHHHHHHHHHHHhCC
Q 040440 278 LRVYEELVKEEPRDFRPYLCQGIIYTLL-R-----KKDEAEKQFEKFRRLVP 323 (355)
Q Consensus 278 ~~~~~~~l~~~~~~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~~l~~~p 323 (355)
+.+|+++.+. +.+..+++.+|.+|... | ++++|+.+|+++.+...
T Consensus 149 ~~~~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 149 SEYFKGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 9999999998 66888999999999864 3 89999999999999854
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.76 E-value=3.7e-17 Score=144.10 Aligned_cols=173 Identities=12% Similarity=0.028 Sum_probs=149.4
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcCC------CchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-------CH
Q 040440 151 ALQTLMEVRIKSQKLVEAVDVIDRLIELEP------NEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPL-------RV 217 (355)
Q Consensus 151 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~------~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~-------~~ 217 (355)
.++.+|..+...|++++|+..|+++++... ....++..+|.+|...|++++|+.+++++++..+. ..
T Consensus 103 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 182 (378)
T 3q15_A 103 SLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTI 182 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHH
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHH
Confidence 567789999999999999999999987632 23457899999999999999999999999987542 24
Q ss_pred HHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHH-----hCCCCh
Q 040440 218 EAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVK-----EEPRDF 292 (355)
Q Consensus 218 ~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~-----~~~~~~ 292 (355)
.++..+|.+|...|+ ++.|...+++|+++.++.........++..+|.+|...|++++|+.+|++++. .+|...
T Consensus 183 ~~~~~lg~~y~~~~~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 261 (378)
T 3q15_A 183 QSLFVIAGNYDDFKH-YDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLP 261 (378)
T ss_dssp HHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHH
T ss_pred HHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHH
Confidence 567899999999998 88888888888888877655556677899999999999999999999999998 677778
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 040440 293 RPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPR 324 (355)
Q Consensus 293 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~ 324 (355)
.++..+|.++...|++++|..++++++++.+.
T Consensus 262 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 293 (378)
T 3q15_A 262 KVLFGLSWTLCKAGQTQKAFQFIEEGLDHITA 293 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999998654
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.75 E-value=2.3e-16 Score=133.14 Aligned_cols=225 Identities=9% Similarity=0.038 Sum_probs=180.8
Q ss_pred ccccccccccchhhhhhhhhhhccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH----HHc---cCHHHHHHHHHHHHH
Q 040440 105 PVAAAATVESTNESTKDTTSAREDVSYEEKEKEIEQHLAANPNDIEALQTLMEVR----IKS---QKLVEAVDVIDRLIE 177 (355)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~----~~~---g~~~~A~~~~~~~~~ 177 (355)
.+..+|....++.-...........+++++++.++.++..+|.+..+|+..+.++ ... +++++++.+++++++
T Consensus 59 ~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~ 138 (306)
T 3dra_A 59 GINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLS 138 (306)
T ss_dssp HHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHH
T ss_pred HHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHH
Confidence 4566777777776555442222224899999999999999999999999999988 666 789999999999999
Q ss_pred cCCCchHHHHHHHHHHHHcCCHH--HHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hccC
Q 040440 178 LEPNEFEWQLLKAQVQSYAGESE--AAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKK 254 (355)
Q Consensus 178 ~~~~~~~~~~~la~~~~~~g~~~--~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~ 254 (355)
.+|.+..+|...+.+....|+++ +++++++++++.+|.|..+|...+.+....+... ....++++++.+++ +..+
T Consensus 139 ~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~--~~~~~~eEl~~~~~aI~~~ 216 (306)
T 3dra_A 139 SDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLA--TDNTIDEELNYVKDKIVKC 216 (306)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGC--CHHHHHHHHHHHHHHHHHC
T ss_pred hCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccc--hhhhHHHHHHHHHHHHHhC
Confidence 99999999999999999999988 9999999999999999999999998888776420 01125555555555 4558
Q ss_pred CchHHHHHHHHHHHHHccCHHH-HHHHHHHHHHhC---CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCChhHH
Q 040440 255 SDLRDFKLLIAQIKVMESKHSE-ALRVYEELVKEE---PRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRR-LVPRNHPYR 329 (355)
Q Consensus 255 ~~~~~~~~~la~~~~~~g~~~~-A~~~~~~~l~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~-~~p~~~~~~ 329 (355)
|.+..+|..++.++...|+... ...++++++..+ +.+..++..++.++.+.|+.++|+++|+.+.+ .+|....+.
T Consensus 217 p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~Dpir~~yW 296 (306)
T 3dra_A 217 PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKYNPIRSNFW 296 (306)
T ss_dssp SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHH
T ss_pred CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccChHHHHHH
Confidence 9999999999999999888555 556777777665 77889999999999999999999999999987 788775554
Q ss_pred HH
Q 040440 330 EY 331 (355)
Q Consensus 330 ~~ 331 (355)
.+
T Consensus 297 ~~ 298 (306)
T 3dra_A 297 DY 298 (306)
T ss_dssp HH
T ss_pred HH
Confidence 44
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.75 E-value=5e-17 Score=143.23 Aligned_cols=189 Identities=13% Similarity=0.057 Sum_probs=146.2
Q ss_pred hccCCHHHHHHHHHHHHHcCC------CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC-------chHHHHHHHHH
Q 040440 126 REDVSYEEKEKEIEQHLAANP------NDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPN-------EFEWQLLKAQV 192 (355)
Q Consensus 126 ~~~~~~~~A~~~~~~~l~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-------~~~~~~~la~~ 192 (355)
+..+++++|+..++++++..+ ....++..+|.+|...|++++|+.+++++++..+. ...++..+|.+
T Consensus 112 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~ 191 (378)
T 3q15_A 112 FDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGN 191 (378)
T ss_dssp HHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHH
T ss_pred HHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHH
Confidence 345699999999999987532 24678999999999999999999999999987432 23468899999
Q ss_pred HHHcCCHHHHHHHHHHHHhhCC---C---CHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHH
Q 040440 193 QSYAGESEAAIKGFEEILRKDP---L---RVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQ 266 (355)
Q Consensus 193 ~~~~g~~~~A~~~~~~~~~~~p---~---~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~ 266 (355)
+...|++++|+++|+++++..+ + ...++..+|.+|...|+ ++.|...+++|+++++... .+....++..+|.
T Consensus 192 y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~-~~~A~~~~~~al~~~~~~~-~~~~~~~~~~la~ 269 (378)
T 3q15_A 192 YDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGD-DQMAVEHFQKAAKVSREKV-PDLLPKVLFGLSW 269 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHhhC-ChhHHHHHHHHHH
Confidence 9999999999999999998742 1 23568899999999998 7788888888888776643 3445888999999
Q ss_pred HHHHccCHHHHHHHHHHHHHhCCC-----ChHHHHHHHHHHHHcCC---HHHHHHHHH
Q 040440 267 IKVMESKHSEALRVYEELVKEEPR-----DFRPYLCQGIIYTLLRK---KDEAEKQFE 316 (355)
Q Consensus 267 ~~~~~g~~~~A~~~~~~~l~~~~~-----~~~~~~~l~~~~~~~g~---~~~A~~~~~ 316 (355)
+|...|++++|+.+++++++..+. ....+..++.++...|+ +.+|+.+++
T Consensus 270 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~ 327 (378)
T 3q15_A 270 TLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFE 327 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 999999999999999999987432 12233444444444454 444444444
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=2e-17 Score=125.51 Aligned_cols=121 Identities=17% Similarity=0.090 Sum_probs=85.8
Q ss_pred HHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHH
Q 040440 170 DVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCK 249 (355)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~ 249 (355)
..|++++..+|++...++.+|.++...|++++|+..|++++..+|++..+|+.+|.
T Consensus 8 ~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~------------------------ 63 (148)
T 2vgx_A 8 GTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGA------------------------ 63 (148)
T ss_dssp CSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH------------------------
T ss_pred hhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHH------------------------
Confidence 34666666666666677777777777777777777777777766666655554444
Q ss_pred hhccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHH
Q 040440 250 KEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHPYR 329 (355)
Q Consensus 250 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~ 329 (355)
++...|++++|+..|++++..+|+++.+++.+|.++...|++++|+..|++++++.|+++.+.
T Consensus 64 -----------------~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 126 (148)
T 2vgx_A 64 -----------------CRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFX 126 (148)
T ss_dssp -----------------HHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGH
T ss_pred -----------------HHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcch
Confidence 445556777777777778888888888888888888888888888888888888877766554
Q ss_pred HH
Q 040440 330 EY 331 (355)
Q Consensus 330 ~~ 331 (355)
..
T Consensus 127 ~~ 128 (148)
T 2vgx_A 127 EL 128 (148)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.6e-16 Score=134.08 Aligned_cols=198 Identities=10% Similarity=-0.014 Sum_probs=173.4
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcc--CHHHHHHHHHHHHHcCCCchHHHHHHHHHH----HHc---CCHH
Q 040440 130 SYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQ--KLVEAVDVIDRLIELEPNEFEWQLLKAQVQ----SYA---GESE 200 (355)
Q Consensus 130 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~la~~~----~~~---g~~~ 200 (355)
..++|+..++++|..+|++..+|+..+.++...| ++++++..+++++..+|++..+|...+.++ ... ++++
T Consensus 48 ~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~ 127 (306)
T 3dra_A 48 YSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPY 127 (306)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTH
T ss_pred CCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHH
Confidence 4478999999999999999999999999999999 999999999999999999999999999988 667 8999
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHH--HHHHHHHh-hccCCchHHHHHHHHHHHHHccC----
Q 040440 201 AAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIE--KAMERCKK-EKKKSDLRDFKLLIAQIKVMESK---- 273 (355)
Q Consensus 201 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~--~Al~~~~~-~~~~~~~~~~~~~la~~~~~~g~---- 273 (355)
+++++++++++.+|.+..+|...+.+....+. ++ ++++.+++ +..++.+..+|...+.+....|.
T Consensus 128 ~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~--------~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~ 199 (306)
T 3dra_A 128 REFDILEAMLSSDPKNHHVWSYRKWLVDTFDL--------HNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATD 199 (306)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--------TTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcc--------cChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchh
Confidence 99999999999999999999999999999887 55 66666666 56689999999999999998887
Q ss_pred --HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHH-HHHHHHHHHHhC---CCChhHHHHHHHH
Q 040440 274 --HSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDE-AEKQFEKFRRLV---PRNHPYREYFVDN 335 (355)
Q Consensus 274 --~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~l~~~---p~~~~~~~~~~~~ 335 (355)
++++++++++++..+|.|..+|+.++.++...|+..+ ...++++++.++ |.+.....++..+
T Consensus 200 ~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~ 267 (306)
T 3dra_A 200 NTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKI 267 (306)
T ss_dssp HHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHH
Confidence 9999999999999999999999999999999998655 556777777665 5554444444333
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=99.75 E-value=2.6e-19 Score=155.07 Aligned_cols=182 Identities=12% Similarity=0.088 Sum_probs=155.3
Q ss_pred CHHHHHHHHHH----HHHcCCCCHHHHHHHHHHHH------------HccCHHHHHHHHHHHHHcCCCchHHHHHHHHHH
Q 040440 130 SYEEKEKEIEQ----HLAANPNDIEALQTLMEVRI------------KSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQ 193 (355)
Q Consensus 130 ~~~~A~~~~~~----~l~~~p~~~~~~~~la~~~~------------~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 193 (355)
.+++|+..++. ++...|+. ++...|.... ..+++++|+..++++++..|+....+..+|.++
T Consensus 80 ~~e~al~~~~~Ge~~~l~i~p~~--ayg~~g~~~~~i~~~~~l~f~~~L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~ 157 (336)
T 1p5q_A 80 GLERAIQRMEKGEHSIVYLKPSY--AFGSVGKEKFQIPPNAELKYELHLKSFEKAKESWEMNSEEKLEQSTIVKERGTVY 157 (336)
T ss_dssp HHHHHHTTCCTTCEEEEEECTTT--TTTTTCBGGGTBCSSCCEEEEEEEEEEECCCCGGGCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCeEEEEECCcc--ccCcCCCCccCCCCCCeEEEEEEEeecccccchhcCCHHHHHHHHHHHHHHHHHH
Confidence 67778887777 77777776 4544554432 567788899999988888888889999999999
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCC---------------HHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hccCCch
Q 040440 194 SYAGESEAAIKGFEEILRKDPLR---------------VEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDL 257 (355)
Q Consensus 194 ~~~g~~~~A~~~~~~~~~~~p~~---------------~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~ 257 (355)
...|++++|+..|++++++.|++ ..++..+|.++...|+ +++|+..+++ +...|.+
T Consensus 158 ~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~--------~~~A~~~~~~al~~~p~~ 229 (336)
T 1p5q_A 158 FKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQA--------FSAAIESCNKALELDSNN 229 (336)
T ss_dssp HHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHCTTC
T ss_pred HHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHhCCCc
Confidence 99999999999999999999988 6899999999999999 6666666666 4557889
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHH-HHHHHHHHHh
Q 040440 258 RDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEA-EKQFEKFRRL 321 (355)
Q Consensus 258 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A-~~~~~~~l~~ 321 (355)
..+++.+|.+|...|++++|+..|+++++.+|++..++..++.++...|++++| ...|++++..
T Consensus 230 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 294 (336)
T 1p5q_A 230 EKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFER 294 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999 5577776653
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=99.74 E-value=2.3e-16 Score=133.96 Aligned_cols=177 Identities=12% Similarity=0.114 Sum_probs=146.6
Q ss_pred CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCch------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC--
Q 040440 145 NPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEF------EWQLLKAQVQSYAGESEAAIKGFEEILRKDPLR-- 216 (355)
Q Consensus 145 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~------~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~-- 216 (355)
+|.....+...+..+...|++++|++.++++++..+... .+++.+|.++...|++++|+..++++++..+..
T Consensus 71 ~~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~ 150 (293)
T 2qfc_A 71 DIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGID 150 (293)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSC
T ss_pred chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCc
Confidence 344556677888999999999999999999999877544 246678888999999999999999999875433
Q ss_pred ----HHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCc-hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-
Q 040440 217 ----VEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSD-LRDFKLLIAQIKVMESKHSEALRVYEELVKEEPR- 290 (355)
Q Consensus 217 ----~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~- 290 (355)
..++..+|.+|...|+ ++.|...+++|+++++.....+. ...++..+|.+|..+|++++|+.+++++++..+.
T Consensus 151 ~~~~~~~~~~lg~~y~~~~~-~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~ 229 (293)
T 2qfc_A 151 VYQNLYIENAIANIYAENGY-LKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRI 229 (293)
T ss_dssp TTHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhc
Confidence 5688999999999998 88888888888887776433322 2368999999999999999999999999986532
Q ss_pred -----ChHHHHHHHHHHHHcCCHHHH-HHHHHHHHHhC
Q 040440 291 -----DFRPYLCQGIIYTLLRKKDEA-EKQFEKFRRLV 322 (355)
Q Consensus 291 -----~~~~~~~l~~~~~~~g~~~~A-~~~~~~~l~~~ 322 (355)
...+++.+|.+|..+|++++| ..++++++.+.
T Consensus 230 ~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~ 267 (293)
T 2qfc_A 230 NSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp TBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 167899999999999999999 88899998764
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.74 E-value=1.2e-16 Score=147.23 Aligned_cols=213 Identities=9% Similarity=0.020 Sum_probs=174.6
Q ss_pred cccccccccchhhhhhhhhhh-----ccCCHH-------HHHHHHHHHHH-cCCCCHHHHHHHHHHHHHccCHHHHHHHH
Q 040440 106 VAAAATVESTNESTKDTTSAR-----EDVSYE-------EKEKEIEQHLA-ANPNDIEALQTLMEVRIKSQKLVEAVDVI 172 (355)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~~-------~A~~~~~~~l~-~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 172 (355)
+...|.....+...+...... ..++++ +|+.+|+++++ ..|++..+|..++..+...|++++|..+|
T Consensus 265 l~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~ 344 (530)
T 2ooe_A 265 LLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIY 344 (530)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 334455555555555541110 135665 99999999997 79999999999999999999999999999
Q ss_pred HHHHHcCCCch-HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH-HhccCchHHHHHHHHHHHHHHHHh
Q 040440 173 DRLIELEPNEF-EWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMA-YDGSDKKLNEVEKRIEKAMERCKK 250 (355)
Q Consensus 173 ~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~-~~~~~~~~~~a~~~~~~Al~~~~~ 250 (355)
+++++..|.+. .+|..++.++.+.|++++|+..|+++++..|.....+...+.+ +...|+ .+.|...|++|++
T Consensus 345 ~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~-~~~A~~~~e~al~---- 419 (530)
T 2ooe_A 345 NRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKD-KSVAFKIFELGLK---- 419 (530)
T ss_dssp HHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCC-HHHHHHHHHHHHH----
T ss_pred HHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCC-hhHHHHHHHHHHH----
Confidence 99999999885 5899999999999999999999999999988877777766655 335677 4444444444444
Q ss_pred hccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChH----HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 040440 251 EKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFR----PYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRN 325 (355)
Q Consensus 251 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~ 325 (355)
..|++..++..++.++...|++++|..+|++++...|.++. +|...+......|+.+.+..+++++++..|++
T Consensus 420 --~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~~ 496 (530)
T 2ooe_A 420 --KYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREE 496 (530)
T ss_dssp --HHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHHH
T ss_pred --HCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCchh
Confidence 45788999999999999999999999999999998776554 88888999999999999999999999999854
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.73 E-value=2.5e-17 Score=128.92 Aligned_cols=152 Identities=12% Similarity=0.082 Sum_probs=132.4
Q ss_pred hccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHH-HcCCHHHHHH
Q 040440 126 REDVSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQS-YAGESEAAIK 204 (355)
Q Consensus 126 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~ 204 (355)
...+++++|+..|+++++.+|++..++..+|.++...|++++|+..+++++..+| ++..+..++.+.. ..++..+|+.
T Consensus 17 ~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~a~~ 95 (176)
T 2r5s_A 17 LQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLELHQQAAESPELK 95 (176)
T ss_dssp HHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHHHhhcccchHHH
Confidence 4445999999999999999999999999999999999999999999999999999 7776666664433 3344456899
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hccCCch--HHHHHHHHHHHHHccCHHHHHHHH
Q 040440 205 GFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDL--RDFKLLIAQIKVMESKHSEALRVY 281 (355)
Q Consensus 205 ~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~ 281 (355)
.++++++.+|++..+++.+|.++...|+ +++|+..+++ ....|.. ..++..++.++...|+.++|+..|
T Consensus 96 ~~~~al~~~P~~~~~~~~la~~~~~~g~--------~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y 167 (176)
T 2r5s_A 96 RLEQELAANPDNFELACELAVQYNQVGR--------DEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKY 167 (176)
T ss_dssp HHHHHHHHSTTCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHccc--------HHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHH
Confidence 9999999999999999999999999999 8888888887 4555543 668999999999999999999999
Q ss_pred HHHHH
Q 040440 282 EELVK 286 (355)
Q Consensus 282 ~~~l~ 286 (355)
++++.
T Consensus 168 ~~al~ 172 (176)
T 2r5s_A 168 RRQLY 172 (176)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99875
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=99.72 E-value=1.2e-16 Score=120.31 Aligned_cols=122 Identities=19% Similarity=0.083 Sum_probs=79.2
Q ss_pred HHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh
Q 040440 171 VIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK 250 (355)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~ 250 (355)
.|++++..+|++...++.+|.++...|++++|+..|++++..+|++..+|+.+|.
T Consensus 6 ~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~------------------------- 60 (142)
T 2xcb_A 6 TLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGA------------------------- 60 (142)
T ss_dssp ---CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH-------------------------
T ss_pred hHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHH-------------------------
Confidence 4555555566666666666666666666666666666666666666555544443
Q ss_pred hccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHH
Q 040440 251 EKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHPYRE 330 (355)
Q Consensus 251 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~ 330 (355)
+|...|++++|+..|++++..+|+++.+++.+|.++..+|++++|+.+|+++++++|+++.+..
T Consensus 61 ----------------~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 124 (142)
T 2xcb_A 61 ----------------CRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEA 124 (142)
T ss_dssp ----------------HHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHH
T ss_pred ----------------HHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHH
Confidence 3344566777777777777777777777777777777777777777777777777776655544
Q ss_pred HHH
Q 040440 331 YFV 333 (355)
Q Consensus 331 ~~~ 333 (355)
...
T Consensus 125 ~~~ 127 (142)
T 2xcb_A 125 LAA 127 (142)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=99.72 E-value=2.7e-17 Score=124.64 Aligned_cols=111 Identities=8% Similarity=-0.074 Sum_probs=99.0
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 040440 132 EEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILR 211 (355)
Q Consensus 132 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 211 (355)
-.+...++++++.+|++..+++.+|.++...|++++|+..|++++..+|++..+|..+|.++...|++++|+..|+++++
T Consensus 19 ~~~~~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~ 98 (151)
T 3gyz_A 19 INSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFA 98 (151)
T ss_dssp HHTSCCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHCCCCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHh
Confidence 33445566777889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh
Q 040440 212 KDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK 250 (355)
Q Consensus 212 ~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~ 250 (355)
++|+++.+++.+|.+|...|+ +++|+..+++
T Consensus 99 l~P~~~~~~~~lg~~~~~lg~--------~~eA~~~~~~ 129 (151)
T 3gyz_A 99 LGKNDYTPVFHTGQCQLRLKA--------PLKAKECFEL 129 (151)
T ss_dssp HSSSCCHHHHHHHHHHHHTTC--------HHHHHHHHHH
T ss_pred hCCCCcHHHHHHHHHHHHcCC--------HHHHHHHHHH
Confidence 999999999999999999999 5555554444
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=3.1e-17 Score=151.03 Aligned_cols=187 Identities=10% Similarity=0.027 Sum_probs=169.8
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccC----------HHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcC--
Q 040440 130 SYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQK----------LVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAG-- 197 (355)
Q Consensus 130 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g-- 197 (355)
..++|++.+++++..+|++..+|+..+.++...|+ ++++++.++++++.+|++..+|...+.++...|
T Consensus 44 ~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~ 123 (567)
T 1dce_A 44 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEP 123 (567)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSC
T ss_pred CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccc
Confidence 45788999999999999999999999999999998 999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccC-chHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHHHc----
Q 040440 198 ESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSD-KKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQIKVME---- 271 (355)
Q Consensus 198 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~-~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~~~---- 271 (355)
+++++++.++++++.+|.+..+|...+.+....| . ++++++.+++ ...++.+..+|..++.++...
T Consensus 124 ~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~--------~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~ 195 (567)
T 1dce_A 124 NWARELELCARFLEADERNFHCWDYRRFVAAQAAVA--------PAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQP 195 (567)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCC--------HHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCC
T ss_pred cHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCC--------hHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccc
Confidence 7799999999999999999999999999999988 6 7778888777 677899999999999998875
Q ss_pred ----------cCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHH------------HHHHHHHHHHhCCC
Q 040440 272 ----------SKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDE------------AEKQFEKFRRLVPR 324 (355)
Q Consensus 272 ----------g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~------------A~~~~~~~l~~~p~ 324 (355)
+.++++++++++++..+|++..+|+.++.++...|++++ |+..|.+++.++|.
T Consensus 196 ~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~f~~~i~~~~~ 270 (567)
T 1dce_A 196 DSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSR 270 (567)
T ss_dssp CSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSCEEEEEEETTTTEEEEEEEEEECTTBT
T ss_pred cccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccceeeeeeccCCceEEEEeccceecccc
Confidence 678999999999999999999999999999999988766 45556666666664
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.72 E-value=7.3e-16 Score=114.16 Aligned_cols=134 Identities=24% Similarity=0.312 Sum_probs=104.1
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhc
Q 040440 150 EALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDG 229 (355)
Q Consensus 150 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 229 (355)
.++..+|.++...|++++|+..++++++.+|.+...+..+|.++...|++++|+..+++++...|.+...+..
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~------- 74 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYN------- 74 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHH-------
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHH-------
Confidence 4567777888888888888888888887777777777778888888888888888888877777666554444
Q ss_pred cCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHH
Q 040440 230 SDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKD 309 (355)
Q Consensus 230 ~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~ 309 (355)
+|.++...|++++|+..+++++...|.+..++..+|.++...|+++
T Consensus 75 ----------------------------------l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 120 (136)
T 2fo7_A 75 ----------------------------------LGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYD 120 (136)
T ss_dssp ----------------------------------HHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHH
T ss_pred ----------------------------------HHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHH
Confidence 4555556677788888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHhCCC
Q 040440 310 EAEKQFEKFRRLVPR 324 (355)
Q Consensus 310 ~A~~~~~~~l~~~p~ 324 (355)
+|..++++++..+|+
T Consensus 121 ~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 121 EAIEYYQKALELDPR 135 (136)
T ss_dssp HHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHccCCC
Confidence 888888888888775
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=99.71 E-value=7.4e-16 Score=130.84 Aligned_cols=170 Identities=14% Similarity=0.111 Sum_probs=140.9
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHcCCCchH------HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHH
Q 040440 152 LQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFE------WQLLKAQVQSYAGESEAAIKGFEEILRKDPLR------VEA 219 (355)
Q Consensus 152 ~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~------~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~ 219 (355)
+...+..+...|++++|+..++++++..+.... ++..+|.++...|++++|+.+|++++...+.. ..+
T Consensus 78 l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 3u3w_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHH
Confidence 344577888999999999999999987665544 34458888888899999999999999864332 346
Q ss_pred HHHHHHHHhccCchHHHHHHHHHHHHHHHHhh-ccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------h
Q 040440 220 YHGLVMAYDGSDKKLNEVEKRIEKAMERCKKE-KKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRD------F 292 (355)
Q Consensus 220 ~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~------~ 292 (355)
+..+|.+|...|+ ++.|...+++|++.++.. ...+....++..+|.+|..+|++++|+.+++++++..+.. .
T Consensus 158 ~~~lg~~y~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~ 236 (293)
T 3u3w_A 158 ENAIANIYAENGY-LKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHH
T ss_pred HHHHHHHHHHcCC-HHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHH
Confidence 8899999999998 888888888888888775 4445556689999999999999999999999999875432 6
Q ss_pred HHHHHHHHHHHHcCC-HHHHHHHHHHHHHhC
Q 040440 293 RPYLCQGIIYTLLRK-KDEAEKQFEKFRRLV 322 (355)
Q Consensus 293 ~~~~~l~~~~~~~g~-~~~A~~~~~~~l~~~ 322 (355)
.+++.+|.+|..+|+ +++|+.+|++++.+.
T Consensus 237 ~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~ 267 (293)
T 3u3w_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 789999999999995 699999999998764
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.71 E-value=1.1e-15 Score=113.16 Aligned_cols=106 Identities=24% Similarity=0.291 Sum_probs=96.9
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHH
Q 040440 127 EDVSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGF 206 (355)
Q Consensus 127 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 206 (355)
..+++++|+..++++++.+|++..++..+|.++...|++++|+.++++++...|.+...+..+|.++...|++++|+..+
T Consensus 13 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 92 (136)
T 2fo7_A 13 KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYY 92 (136)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcCHHHHHHHH
Confidence 34599999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhCCCCHHHHHHHHHHHhccCc
Q 040440 207 EEILRKDPLRVEAYHGLVMAYDGSDK 232 (355)
Q Consensus 207 ~~~~~~~p~~~~~~~~l~~~~~~~~~ 232 (355)
++++...|.+...+..++.++...|+
T Consensus 93 ~~~~~~~~~~~~~~~~la~~~~~~~~ 118 (136)
T 2fo7_A 93 QKALELDPRSAEAWYNLGNAYYKQGD 118 (136)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHTTTC
T ss_pred HHHHHhCCCChHHHHHHHHHHHHHcc
Confidence 99999999887777766666655555
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=1.6e-16 Score=134.49 Aligned_cols=153 Identities=10% Similarity=0.066 Sum_probs=140.3
Q ss_pred hccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHH
Q 040440 126 REDVSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKG 205 (355)
Q Consensus 126 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 205 (355)
...+++++|+..|+++++.+|++..++..+|.++...|++++|+..+++++..+|+........+..+...++.++|+..
T Consensus 128 ~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~~~a~~~ 207 (287)
T 3qou_A 128 MQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAADTPEIQQ 207 (287)
T ss_dssp HHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcccCccHHH
Confidence 44569999999999999999999999999999999999999999999999999997777777777888899999999999
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hccCCch--HHHHHHHHHHHHHccCHHHHHHHHH
Q 040440 206 FEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDL--RDFKLLIAQIKVMESKHSEALRVYE 282 (355)
Q Consensus 206 ~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~~ 282 (355)
|+++++.+|++..+++.+|.++...|+ +++|+..+.+ ....|.. ..++..++.++...|+.++|...|+
T Consensus 208 l~~al~~~P~~~~~~~~la~~l~~~g~--------~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r 279 (287)
T 3qou_A 208 LQQQVAENPEDAALATQLALQLHQVGR--------NEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXYR 279 (287)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHhcCCccHHHHHHHHHHHHHccc--------HHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHH
Confidence 999999999999999999999999999 7788877777 4556666 8899999999999999999999999
Q ss_pred HHHH
Q 040440 283 ELVK 286 (355)
Q Consensus 283 ~~l~ 286 (355)
+++.
T Consensus 280 ~al~ 283 (287)
T 3qou_A 280 RQLY 283 (287)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9875
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=1.5e-16 Score=120.56 Aligned_cols=97 Identities=14% Similarity=0.057 Sum_probs=88.8
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 040440 136 KEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPL 215 (355)
Q Consensus 136 ~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~ 215 (355)
..+++++..+|++..+++.+|.++...|++++|+..|++++..+|++..+|+.+|.++...|++++|+..|++++.++|+
T Consensus 8 ~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 87 (148)
T 2vgx_A 8 GTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX 87 (148)
T ss_dssp CSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred hhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 45788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhccCc
Q 040440 216 RVEAYHGLVMAYDGSDK 232 (355)
Q Consensus 216 ~~~~~~~l~~~~~~~~~ 232 (355)
++.+++.+|.++...|+
T Consensus 88 ~~~~~~~lg~~~~~~g~ 104 (148)
T 2vgx_A 88 EPRFPFHAAECLLQXGE 104 (148)
T ss_dssp CTHHHHHHHHHHHHTTC
T ss_pred CchHHHHHHHHHHHcCC
Confidence 98887777766655444
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=99.70 E-value=2.4e-16 Score=132.87 Aligned_cols=183 Identities=11% Similarity=0.050 Sum_probs=138.4
Q ss_pred hccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHH
Q 040440 126 REDVSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKG 205 (355)
Q Consensus 126 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 205 (355)
+..+++++|+..|+++++.+|++..++..+|.+|...|++++|+..++++++.+|++..+++.+|.++...|++++|+..
T Consensus 15 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 94 (281)
T 2c2l_A 15 FVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIAN 94 (281)
T ss_dssp HHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 44459999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 040440 206 FEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQIKVMESKHSEALRVYEEL 284 (355)
Q Consensus 206 ~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 284 (355)
|+++++++|++...+...+...... .++...... ....+.+..+...++.++ .|++++|++.++++
T Consensus 95 ~~~al~l~p~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~i~~~l~~l~--~~~~~~A~~~~~~a 161 (281)
T 2c2l_A 95 LQRAYSLAKEQRLNFGDDIPSALRI-----------AKKKRWNSIEERRIHQESELHSYLTRLI--AAERERELEECQRN 161 (281)
T ss_dssp HHHHHHHHHHTTCCCCSHHHHHHHH-----------HHHHHHHHHHHTCCCCCCHHHHHHHHHH--HHHHHHHHTTTSGG
T ss_pred HHHHHHhCccchhhHHHHHHHHHHH-----------HHHHHHHHHHHHHHhhhHHHHHHHHHHH--HHHHHHHHHHHHhh
Confidence 9999998876532211111111111 111111111 223455556666666654 68999999999999
Q ss_pred HHhCCCChHHHHHHHHHHHHc-CCHHHHHHHHHHHHHh
Q 040440 285 VKEEPRDFRPYLCQGIIYTLL-RKKDEAEKQFEKFRRL 321 (355)
Q Consensus 285 l~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~l~~ 321 (355)
++.+|++......++.++... +.+++|...|.++.+.
T Consensus 162 l~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 162 HEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp GTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred hccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 999998888888888777776 7788999999887653
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=1.6e-14 Score=122.54 Aligned_cols=221 Identities=11% Similarity=0.078 Sum_probs=175.8
Q ss_pred ccccccccccchhhhhhhhhhhccC--------CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcc--CHHHHHHHHHH
Q 040440 105 PVAAAATVESTNESTKDTTSAREDV--------SYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQ--KLVEAVDVIDR 174 (355)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g--~~~~A~~~~~~ 174 (355)
.+..+|....++.-........... .+++++..++.++..+|.+..+|...+.++...| ++++++.++++
T Consensus 56 ~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k 135 (331)
T 3dss_A 56 ILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCAR 135 (331)
T ss_dssp HHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHH
T ss_pred HHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHH
Confidence 4455666666665443332222111 2789999999999999999999999999999999 49999999999
Q ss_pred HHHcCCCchHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHH------HHHHHHHHHHHH
Q 040440 175 LIELEPNEFEWQLLKAQVQSYAGE-SEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLN------EVEKRIEKAMER 247 (355)
Q Consensus 175 ~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~------~a~~~~~~Al~~ 247 (355)
+++.+|.+..+|...+.+....|. +++++++++++++.+|.|..+|..++.++...+.... ...+.++++++.
T Consensus 136 ~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~ 215 (331)
T 3dss_A 136 FLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELEL 215 (331)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHH
T ss_pred HHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHH
Confidence 999999999999999999999999 6999999999999999999999999988876621000 001336667777
Q ss_pred HHh-hccCCchHHHHHHHHHHHHHc-----------cCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH---HcCCHHHHH
Q 040440 248 CKK-EKKKSDLRDFKLLIAQIKVME-----------SKHSEALRVYEELVKEEPRDFRPYLCQGIIYT---LLRKKDEAE 312 (355)
Q Consensus 248 ~~~-~~~~~~~~~~~~~la~~~~~~-----------g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~---~~g~~~~A~ 312 (355)
+.+ +...|.+..+|+.+..++... +.++++++.++++++..|++.+.+..++.+.. ..|..++..
T Consensus 216 ~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~ 295 (331)
T 3dss_A 216 VQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETL 295 (331)
T ss_dssp HHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHH
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHH
Confidence 666 566899999998776666655 56899999999999999998666555554433 357889999
Q ss_pred HHHHHHHHhCCCC
Q 040440 313 KQFEKFRRLVPRN 325 (355)
Q Consensus 313 ~~~~~~l~~~p~~ 325 (355)
.++.+++++||..
T Consensus 296 ~~l~~l~~~Dp~r 308 (331)
T 3dss_A 296 QYFSTLKAVDPMR 308 (331)
T ss_dssp HHHHHHHHHCGGG
T ss_pred HHHHHHHHhCcch
Confidence 9999999999976
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.70 E-value=2.4e-16 Score=132.39 Aligned_cols=162 Identities=17% Similarity=0.118 Sum_probs=140.8
Q ss_pred HHccCHHHHHHHHHHHHHc--------CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--------CCCHHHHHHH
Q 040440 160 IKSQKLVEAVDVIDRLIEL--------EPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKD--------PLRVEAYHGL 223 (355)
Q Consensus 160 ~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--------p~~~~~~~~l 223 (355)
...|++++|+.+|+++++. .|....++..+|.++...|++++|+.+|+++++.. |....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 4578888888888888874 24556789999999999999999999999999873 5566789999
Q ss_pred HHHHhccCchHHHHHHHHHHHHHHHHhh--ccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCChH
Q 040440 224 VMAYDGSDKKLNEVEKRIEKAMERCKKE--KKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKE--------EPRDFR 293 (355)
Q Consensus 224 ~~~~~~~~~~~~~a~~~~~~Al~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~--------~~~~~~ 293 (355)
|.++...|+ +++|...++++++.+++. ...+....++..+|.+|...|++++|+.+|+++++. .|....
T Consensus 92 ~~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 170 (283)
T 3edt_B 92 AVLYGKRGK-YKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAK 170 (283)
T ss_dssp HHHHHTTTC-HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHH
T ss_pred HHHHHHhcc-HHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 999999998 888888888888888773 334677888999999999999999999999999988 666678
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 040440 294 PYLCQGIIYTLLRKKDEAEKQFEKFRRLV 322 (355)
Q Consensus 294 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 322 (355)
++..+|.++...|++++|+.++++++++.
T Consensus 171 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 199 (283)
T 3edt_B 171 TKNNLASCYLKQGKYQDAETLYKEILTRA 199 (283)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999873
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=99.70 E-value=1.5e-16 Score=119.76 Aligned_cols=97 Identities=12% Similarity=0.009 Sum_probs=85.7
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 040440 136 KEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPL 215 (355)
Q Consensus 136 ~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~ 215 (355)
..|++++..+|++...++.+|..+...|++++|+..|++++..+|++..+|+.+|.++...|++++|+..|++++.++|+
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 84 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN 84 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 46777888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhccCc
Q 040440 216 RVEAYHGLVMAYDGSDK 232 (355)
Q Consensus 216 ~~~~~~~l~~~~~~~~~ 232 (355)
++.+++.+|.++...|+
T Consensus 85 ~~~~~~~lg~~~~~~g~ 101 (142)
T 2xcb_A 85 EPRFPFHAAECHLQLGD 101 (142)
T ss_dssp CTHHHHHHHHHHHHTTC
T ss_pred CcHHHHHHHHHHHHcCC
Confidence 98888777766655544
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.69 E-value=9e-16 Score=120.04 Aligned_cols=87 Identities=16% Similarity=0.141 Sum_probs=42.2
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHH-HHHcCCH--HHHHHHH
Q 040440 130 SYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQV-QSYAGES--EAAIKGF 206 (355)
Q Consensus 130 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~-~~~~g~~--~~A~~~~ 206 (355)
++++|+..++++++.+|++..++..+|.+|...|++++|+.+|+++++.+|++..++..+|.+ +...|++ ++|+..|
T Consensus 25 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~ 104 (177)
T 2e2e_A 25 NPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMI 104 (177)
T ss_dssp --CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHHHH
Confidence 455555555555555555555555555555555555555555555555545444444444444 4444444 4444444
Q ss_pred HHHHhhCCCC
Q 040440 207 EEILRKDPLR 216 (355)
Q Consensus 207 ~~~~~~~p~~ 216 (355)
+++++.+|++
T Consensus 105 ~~al~~~p~~ 114 (177)
T 2e2e_A 105 DKALALDSNE 114 (177)
T ss_dssp HHHHHHCTTC
T ss_pred HHHHHhCCCc
Confidence 4444444443
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=99.69 E-value=5.3e-17 Score=140.51 Aligned_cols=150 Identities=15% Similarity=0.083 Sum_probs=134.9
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCc---------------hHHHHHHHHHHH
Q 040440 130 SYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNE---------------FEWQLLKAQVQS 194 (355)
Q Consensus 130 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~---------------~~~~~~la~~~~ 194 (355)
++++|+..++++++.+|++..++..+|.++...|++++|+..|+++++..|++ ..++.++|.++.
T Consensus 128 ~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~ 207 (336)
T 1p5q_A 128 SFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHL 207 (336)
T ss_dssp EEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777888888888889999999999999999999999999999999999988 589999999999
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHHHccC
Q 040440 195 YAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQIKVMESK 273 (355)
Q Consensus 195 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~~~g~ 273 (355)
..|++++|+..|+++++++|++..+++.+|.++...|+ +++|+..+++ +...|.+..++..++.++...|+
T Consensus 208 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~--------~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~ 279 (336)
T 1p5q_A 208 KLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVND--------FELARADFQKVLQLYPNNKAAKTQLAVCQQRIRR 279 (336)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999 6666666665 45588899999999999999999
Q ss_pred HHHH-HHHHHHHHHh
Q 040440 274 HSEA-LRVYEELVKE 287 (355)
Q Consensus 274 ~~~A-~~~~~~~l~~ 287 (355)
+++| ...|++++..
T Consensus 280 ~~~a~~~~~~~~~~~ 294 (336)
T 1p5q_A 280 QLAREKKLYANMFER 294 (336)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 9999 5577777643
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.67 E-value=5.1e-15 Score=123.75 Aligned_cols=187 Identities=13% Similarity=0.037 Sum_probs=151.0
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCC--CchHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 040440 134 KEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEP--NEFEWQLLKAQVQSYAGESEAAIKGFEEILR 211 (355)
Q Consensus 134 A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 211 (355)
|+..+++.++..+.+..++..+|.++...|++++|+.++.+.+..+| ++.+++..++.++...|+.+.|.+.++++.+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 78888888887666777788999999999999999999999998886 7888999999999999999999999999999
Q ss_pred hCCC----CHHHHHHH--HHHHhccC--chHHHHHHHHHHHHHHHHhh-ccCCchHHHHHHHHHHHHHccCHHHHHHHHH
Q 040440 212 KDPL----RVEAYHGL--VMAYDGSD--KKLNEVEKRIEKAMERCKKE-KKKSDLRDFKLLIAQIKVMESKHSEALRVYE 282 (355)
Q Consensus 212 ~~p~----~~~~~~~l--~~~~~~~~--~~~~~a~~~~~~Al~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 282 (355)
.+|+ +......+ +.+....| + +++|+.+|++. ...++.......+. ++..+|++++|.+.++
T Consensus 165 ~~~d~~~~~d~~l~~Laea~v~l~~g~~~--------~q~A~~~f~El~~~~p~~~~~~lLln-~~~~~g~~~eAe~~L~ 235 (310)
T 3mv2_B 165 AIEDTVSGDNEMILNLAESYIKFATNKET--------ATSNFYYYEELSQTFPTWKTQLGLLN-LHLQQRNIAEAQGIVE 235 (310)
T ss_dssp HSCHHHHHHHHHHHHHHHHHHHHHHTCST--------TTHHHHHHHHHHTTSCSHHHHHHHHH-HHHHHTCHHHHHHHHH
T ss_pred cCccccccchHHHHHHHHHHHHHHhCCcc--------HHHHHHHHHHHHHhCCCcccHHHHHH-HHHHcCCHHHHHHHHH
Confidence 9883 22333333 43344444 6 78888888884 34444222222223 8999999999999999
Q ss_pred HHHHh----------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHH
Q 040440 283 ELVKE----------EPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHPYREY 331 (355)
Q Consensus 283 ~~l~~----------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~ 331 (355)
.+++. +|+++.++.+++.+...+|+ +|.++++++.+..|+++....+
T Consensus 236 ~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~d~ 292 (310)
T 3mv2_B 236 LLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIKHH 292 (310)
T ss_dssp HHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHHHH
T ss_pred HHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHHHH
Confidence 88776 48899999999999999997 8999999999999998665443
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=1.9e-14 Score=122.69 Aligned_cols=179 Identities=9% Similarity=0.040 Sum_probs=155.7
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHc-C-CHHHHHHHH
Q 040440 130 SYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQ-KLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYA-G-ESEAAIKGF 206 (355)
Q Consensus 130 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~-g-~~~~A~~~~ 206 (355)
..++|++.+++++..+|++..+|+..+.++...| ++++++..+++++..+|++..+|..++.++... + +++++++++
T Consensus 69 ~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~ 148 (349)
T 3q7a_A 69 KSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYI 148 (349)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHH
T ss_pred CCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHH
Confidence 4578999999999999999999999999999999 599999999999999999999999999999988 8 999999999
Q ss_pred HHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHHHccC-------HHHHH
Q 040440 207 EEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQIKVMESK-------HSEAL 278 (355)
Q Consensus 207 ~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~~~g~-------~~~A~ 278 (355)
+++++.+|.+..+|...+.+....+.........+.++++.+++ +..++.+..+|...+.++...++ +++++
T Consensus 149 ~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eEL 228 (349)
T 3q7a_A 149 HGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSRSLQDEL 228 (349)
T ss_dssp HHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHH
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccchHHHHHHH
Confidence 99999999999999999988877766110011123367777666 56689999999999999998887 79999
Q ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHcCCH
Q 040440 279 RVYEELVKEEPRDFRPYLCQGIIYTLLRKK 308 (355)
Q Consensus 279 ~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~ 308 (355)
+++++++..+|+|..+|+.+..++...|+.
T Consensus 229 e~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~ 258 (349)
T 3q7a_A 229 IYILKSIHLIPHNVSAWNYLRGFLKHFSLP 258 (349)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhcCCC
Confidence 999999999999999998888888776654
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=99.66 E-value=9.3e-15 Score=112.61 Aligned_cols=132 Identities=20% Similarity=0.141 Sum_probs=102.0
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHh
Q 040440 149 IEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYD 228 (355)
Q Consensus 149 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 228 (355)
...+..+|.++...|++++|+..|+++++.+|.+..++..+|.++...|++++|+..++++++.+|++..+++.+
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~----- 87 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRR----- 87 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH-----
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHH-----
Confidence 456778888888888888888888888888888888888888888888888888888888888887776655544
Q ss_pred ccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHH--HHHHHHcC
Q 040440 229 GSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQ--GIIYTLLR 306 (355)
Q Consensus 229 ~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l--~~~~~~~g 306 (355)
|.++...|++++|+.+|+++++.+|.+..++..+ +..+...|
T Consensus 88 ------------------------------------a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~ 131 (166)
T 1a17_A 88 ------------------------------------AASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQK 131 (166)
T ss_dssp ------------------------------------HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHH
T ss_pred ------------------------------------HHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence 4455566777888888888888888877777444 44477778
Q ss_pred CHHHHHHHHHHHHHh
Q 040440 307 KKDEAEKQFEKFRRL 321 (355)
Q Consensus 307 ~~~~A~~~~~~~l~~ 321 (355)
++++|+..+++...+
T Consensus 132 ~~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 132 AFERAIAGDEHKRSV 146 (166)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHcccchHHH
Confidence 888888888776554
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.8e-15 Score=111.49 Aligned_cols=113 Identities=16% Similarity=0.053 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHh
Q 040440 149 IEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYD 228 (355)
Q Consensus 149 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 228 (355)
..++..+|..++..|+|++|+.+|+++++++|++..++..+|.+|..+|++++|++.|+++++++|++...+..++.
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~--- 84 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAK--- 84 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH---
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHH---
Confidence 45678899999999999999999999999999999999999999999999999999999999887765544433333
Q ss_pred ccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHH
Q 040440 229 GSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYL 296 (355)
Q Consensus 229 ~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~ 296 (355)
++..+|.++...|++++|++.|++++...| ++....
T Consensus 85 -------------------------------~~~~lg~~~~~~~~~~~A~~~~~kal~~~~-~~~~~~ 120 (127)
T 4gcn_A 85 -------------------------------AMSRAGNAFQKQNDLSLAVQWFHRSLSEFR-DPELVK 120 (127)
T ss_dssp -------------------------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHSC-CHHHHH
T ss_pred -------------------------------HHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-CHHHHH
Confidence 334557777888888888888888888777 444433
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.66 E-value=7.9e-15 Score=107.78 Aligned_cols=121 Identities=16% Similarity=0.100 Sum_probs=85.6
Q ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 040440 147 NDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMA 226 (355)
Q Consensus 147 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 226 (355)
.....+..+|..+...|++++|+..|+++++.+|++..++..+|.++...|++++|+..|+++++++|++..+++.+|.+
T Consensus 2 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 81 (126)
T 3upv_A 2 MKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 34566777888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHH
Q 040440 227 YDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIK 268 (355)
Q Consensus 227 ~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~ 268 (355)
+...|+ +++|...+++++++.......|.+..++..++.+.
T Consensus 82 ~~~~~~-~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~ 122 (126)
T 3upv_A 82 QIAVKE-YASALETLDAARTKDAEVNNGSSAREIDQLYYKAS 122 (126)
T ss_dssp HHHTTC-HHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred HHHHhC-HHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHH
Confidence 888777 44444445544444333333355555555555444
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=99.66 E-value=9.9e-15 Score=117.56 Aligned_cols=139 Identities=14% Similarity=0.063 Sum_probs=109.5
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhc
Q 040440 150 EALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDG 229 (355)
Q Consensus 150 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 229 (355)
..++.+|..+...|++++|+..|++++ ++ +..+++.+|.++...|++++|+..|+++++.+|++..+++.+|.++..
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence 346788888999999999999999885 33 667888999999999999999999999999999999999999999999
Q ss_pred cCchHHHHHHHHHHHHHHHHhhc----------cCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCh
Q 040440 230 SDKKLNEVEKRIEKAMERCKKEK----------KKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDF 292 (355)
Q Consensus 230 ~~~~~~~a~~~~~~Al~~~~~~~----------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~ 292 (355)
.|+ +++|...++++++...... ..+....++..+|.+|...|++++|+..|+++++.+|++.
T Consensus 84 ~~~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 155 (213)
T 1hh8_A 84 TEK-YDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPR 155 (213)
T ss_dssp TTC-HHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGG
T ss_pred ccc-HHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcccc
Confidence 888 3444444444433322111 2334558899999999999999999999999999998763
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.65 E-value=5.5e-14 Score=128.12 Aligned_cols=181 Identities=15% Similarity=0.070 Sum_probs=118.3
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHc-----CCHH
Q 040440 130 SYEEKEKEIEQHLAANPNDIEALQTLMEVRIK----SQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYA-----GESE 200 (355)
Q Consensus 130 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~-----g~~~ 200 (355)
++++|+..|+++++. .+..++..+|.+|.. .+++++|+.+|+++.+. .+..+++.+|.+|... ++++
T Consensus 238 ~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~~~~g~~~~~~ 313 (490)
T 2xm6_A 238 DYTQSRVLFSQSAEQ--GNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ--GNSDGQYYLAHLYDKGAEGVAKNRE 313 (490)
T ss_dssp CHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHCBTTBCCCHH
T ss_pred CHHHHHHHHHHHHHC--CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCCHH
Confidence 455555555554442 334555555555555 55555555555555533 3444555555555554 5555
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHH----ccCHHH
Q 040440 201 AAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVM----ESKHSE 276 (355)
Q Consensus 201 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~ 276 (355)
+|+.+|+++.+. .+..+++.+|.+|...|. ...+++|++++++.... .+...++.+|.+|.. .+++++
T Consensus 314 ~A~~~~~~a~~~--~~~~a~~~lg~~y~~~g~-----~~~~~~A~~~~~~a~~~-~~~~a~~~Lg~~y~~g~g~~~~~~~ 385 (490)
T 2xm6_A 314 QAISWYTKSAEQ--GDATAQANLGAIYFRLGS-----EEEHKKAVEWFRKAAAK-GEKAAQFNLGNALLQGKGVKKDEQQ 385 (490)
T ss_dssp HHHHHHHHHHHT--TCHHHHHHHHHHHHHSCC-----HHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred HHHHHHHHHHhc--CCHHHHHHHHHHHHhCCC-----cccHHHHHHHHHHHHHC-CCHHHHHHHHHHHHcCCCCCCCHHH
Confidence 666665555553 344555556655554431 11356666666662222 567889999999998 899999
Q ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCC
Q 040440 277 ALRVYEELVKEEPRDFRPYLCQGIIYTL----LRKKDEAEKQFEKFRRLVPR 324 (355)
Q Consensus 277 A~~~~~~~l~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~l~~~p~ 324 (355)
|+.+|+++.+. .++.+++.+|.+|.. .+++++|..+|+++++..|+
T Consensus 386 A~~~~~~A~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~ 435 (490)
T 2xm6_A 386 AAIWMRKAAEQ--GLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMN 435 (490)
T ss_dssp HHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHhC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCC
Confidence 99999999876 468899999999998 89999999999999999854
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.65 E-value=3.4e-15 Score=127.60 Aligned_cols=184 Identities=11% Similarity=0.003 Sum_probs=146.3
Q ss_pred hcc-CCHHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC--c----hHHHHHHHHH
Q 040440 126 RED-VSYEEKEKEIEQHLAANPND------IEALQTLMEVRIKSQKLVEAVDVIDRLIELEPN--E----FEWQLLKAQV 192 (355)
Q Consensus 126 ~~~-~~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~--~----~~~~~~la~~ 192 (355)
|.. +++++|+..|+++++..+.. ..++..+|.+|...|++++|+.+|++++++.+. + ..++..+|.+
T Consensus 46 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~ 125 (307)
T 2ifu_A 46 FKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKL 125 (307)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 444 49999999999999865432 568899999999999999999999999987432 1 3478899999
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHH
Q 040440 193 QSYAGESEAAIKGFEEILRKDPLR------VEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQ 266 (355)
Q Consensus 193 ~~~~g~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~ 266 (355)
|.. |++++|+.+|++++++.+.. ..++..+|.++...|+ +++|+..+++++++.............+..+|.
T Consensus 126 ~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~ 203 (307)
T 2ifu_A 126 MEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQK-FDEAAASLQKEKSMYKEMENYPTCYKKCIAQVL 203 (307)
T ss_dssp HTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Confidence 998 99999999999999987643 4678899999999998 777777888888777664333334557888999
Q ss_pred HHHHccCHHHHHHHHHHHHHhCCCChH-----HHHHHHHHHHHcCCHHHHHH
Q 040440 267 IKVMESKHSEALRVYEELVKEEPRDFR-----PYLCQGIIYTLLRKKDEAEK 313 (355)
Q Consensus 267 ~~~~~g~~~~A~~~~~~~l~~~~~~~~-----~~~~l~~~~~~~g~~~~A~~ 313 (355)
++...|++++|+.+|++++ .+|.... ....++..+ ..|+.+++..
T Consensus 204 ~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 204 VQLHRADYVAAQKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 9999999999999999999 9886542 344455544 5677666555
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=99.65 E-value=4.3e-14 Score=119.89 Aligned_cols=161 Identities=11% Similarity=0.013 Sum_probs=136.1
Q ss_pred hccCCHHHHHHHHHHHHHcCCCCH------HHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCc------hHHHHHHHHHH
Q 040440 126 REDVSYEEKEKEIEQHLAANPNDI------EALQTLMEVRIKSQKLVEAVDVIDRLIELEPNE------FEWQLLKAQVQ 193 (355)
Q Consensus 126 ~~~~~~~~A~~~~~~~l~~~p~~~------~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~------~~~~~~la~~~ 193 (355)
+..+++++|++.++++++..+... ..++.+|.++...|++++|+..++++++..+.. ..++..+|.+|
T Consensus 86 ~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y 165 (293)
T 2qfc_A 86 CKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIY 165 (293)
T ss_dssp HHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH
Confidence 445699999999999999877654 346678889999999999999999999864433 45889999999
Q ss_pred HHcCCHHHHHHHHHHHH---hhCCCCH----HHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHH
Q 040440 194 SYAGESEAAIKGFEEIL---RKDPLRV----EAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQ 266 (355)
Q Consensus 194 ~~~g~~~~A~~~~~~~~---~~~p~~~----~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~ 266 (355)
...|++++|+.+|++++ +..+++. .+++++|.+|...|+ +++|...+++|+++............++..+|.
T Consensus 166 ~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~-y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~ 244 (293)
T 2qfc_A 166 AENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSR-YEESLYQVNKAIEISCRINSMALIGQLYYQRGE 244 (293)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhh-HHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 99999999999999999 4455543 578999999999999 888888888888887665555566888999999
Q ss_pred HHHHccCHHHH-HHHHHHHHHh
Q 040440 267 IKVMESKHSEA-LRVYEELVKE 287 (355)
Q Consensus 267 ~~~~~g~~~~A-~~~~~~~l~~ 287 (355)
+|...|++++| ..+|++++..
T Consensus 245 ~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 245 CLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHcCCcHHHHHHHHHHHHHH
Confidence 99999999999 8889998764
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=99.65 E-value=6.6e-15 Score=117.51 Aligned_cols=163 Identities=11% Similarity=0.090 Sum_probs=107.4
Q ss_pred HHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhh------CCCCHHHHHHHHHHHhccCch
Q 040440 160 IKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRK------DPLRVEAYHGLVMAYDGSDKK 233 (355)
Q Consensus 160 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~------~p~~~~~~~~l~~~~~~~~~~ 233 (355)
+..|++++|.+.++......+....++..+|.++...|++++|+..+++++.. .+....++..+|.++...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~- 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN- 81 (203)
T ss_dssp ----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC-
T ss_pred cccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC-
Confidence 34566666666443333322244455666666666666666666666666653 22234456666666666666
Q ss_pred HHHHHHHHHHHHHHHHhhccCC-chHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC--CC----hHHHHHHHHHHHHcC
Q 040440 234 LNEVEKRIEKAMERCKKEKKKS-DLRDFKLLIAQIKVMESKHSEALRVYEELVKEEP--RD----FRPYLCQGIIYTLLR 306 (355)
Q Consensus 234 ~~~a~~~~~~Al~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~--~~----~~~~~~l~~~~~~~g 306 (355)
++++...+++++++++.....+ ....++..+|.++...|++++|+.++++++...+ .+ ..++..+|.++...|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 5566666666666655433222 4456688899999999999999999999997532 22 234689999999999
Q ss_pred CHHHHHHHHHHHHHhCC
Q 040440 307 KKDEAEKQFEKFRRLVP 323 (355)
Q Consensus 307 ~~~~A~~~~~~~l~~~p 323 (355)
++++|..++++++++..
T Consensus 162 ~~~~A~~~~~~al~~~~ 178 (203)
T 3gw4_A 162 NLLEAQQHWLRARDIFA 178 (203)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 99999999999998753
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=1.7e-14 Score=122.89 Aligned_cols=172 Identities=10% Similarity=0.087 Sum_probs=153.6
Q ss_pred HHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhcc-C-chH
Q 040440 158 VRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAG-ESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGS-D-KKL 234 (355)
Q Consensus 158 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~-~-~~~ 234 (355)
+....+..++|++.+++++..+|++..+|...+.++...| +++++++.+++++..+|++..+|+..+.++... + +
T Consensus 63 ~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~-- 140 (349)
T 3q7a_A 63 IAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQD-- 140 (349)
T ss_dssp HHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSC--
T ss_pred HHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCC--
Confidence 3334455678999999999999999999999999999999 599999999999999999999999999998887 6 6
Q ss_pred HHHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHHHccCHH--------HHHHHHHHHHHhCCCChHHHHHHHHHHHHc
Q 040440 235 NEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQIKVMESKHS--------EALRVYEELVKEEPRDFRPYLCQGIIYTLL 305 (355)
Q Consensus 235 ~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~--------~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~ 305 (355)
++++++++.+ +..++.+..+|...+.+....|.++ +++++++++++.+|.|..+|...+.++...
T Consensus 141 ------~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l 214 (349)
T 3q7a_A 141 ------PVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSR 214 (349)
T ss_dssp ------CHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTS
T ss_pred ------hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence 6788888877 6788999999999999999988888 999999999999999999999999999999
Q ss_pred CC-------HHHHHHHHHHHHHhCCCChhHHHHHHHHHH
Q 040440 306 RK-------KDEAEKQFEKFRRLVPRNHPYREYFVDNMV 337 (355)
Q Consensus 306 g~-------~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~ 337 (355)
|+ ++++++++++++..+|+|.....++..++.
T Consensus 215 ~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~ 253 (349)
T 3q7a_A 215 PGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLK 253 (349)
T ss_dssp TTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 87 799999999999999999776656555543
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=99.64 E-value=1.3e-14 Score=123.08 Aligned_cols=161 Identities=13% Similarity=0.063 Sum_probs=136.2
Q ss_pred hccCCHHHHHHHHHHHHHcCCCCHH------HHHHHHHHHHHccCHHHHHHHHHHHHHcCCCc------hHHHHHHHHHH
Q 040440 126 REDVSYEEKEKEIEQHLAANPNDIE------ALQTLMEVRIKSQKLVEAVDVIDRLIELEPNE------FEWQLLKAQVQ 193 (355)
Q Consensus 126 ~~~~~~~~A~~~~~~~l~~~p~~~~------~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~------~~~~~~la~~~ 193 (355)
+..+++++|+..++++++..+.+.. .+..+|.++...|++++|+.+|++++...+.. ..++..+|.+|
T Consensus 86 ~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y 165 (293)
T 3u3w_A 86 CKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIY 165 (293)
T ss_dssp HHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHH
Confidence 5556999999999999998776654 33458889999999999999999999864432 23689999999
Q ss_pred HHcCCHHHHHHHHHHHHhhC-------CCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHH
Q 040440 194 SYAGESEAAIKGFEEILRKD-------PLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQ 266 (355)
Q Consensus 194 ~~~g~~~~A~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~ 266 (355)
...|++++|+.+|+++++.. +....+++++|.+|...|+ +++|...+++|+++............++..+|.
T Consensus 166 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~-y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~ 244 (293)
T 3u3w_A 166 AENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSR-YEESLYQVNKAIEISCRINSMALIGQLYYQRGE 244 (293)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 99999999999999999631 2234578999999999998 889999999999988887667777899999999
Q ss_pred HHHHcc-CHHHHHHHHHHHHHh
Q 040440 267 IKVMES-KHSEALRVYEELVKE 287 (355)
Q Consensus 267 ~~~~~g-~~~~A~~~~~~~l~~ 287 (355)
+|..+| ++++|+.+|++++..
T Consensus 245 ~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 245 CLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHhCCcHHHHHHHHHHHHHH
Confidence 999999 579999999999865
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=99.64 E-value=7.7e-15 Score=117.12 Aligned_cols=163 Identities=16% Similarity=0.031 Sum_probs=132.1
Q ss_pred hccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHc------CCCchHHHHHHHHHHHHcCCH
Q 040440 126 REDVSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIEL------EPNEFEWQLLKAQVQSYAGES 199 (355)
Q Consensus 126 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~la~~~~~~g~~ 199 (355)
+..+++++|++.++......+....++..+|.++...|++++|+.++++++.. .+....++..+|.++...|++
T Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred cccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 34568999999666555433367889999999999999999999999999984 334456799999999999999
Q ss_pred HHHHHHHHHHHhh---CCCC----HHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHcc
Q 040440 200 EAAIKGFEEILRK---DPLR----VEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVMES 272 (355)
Q Consensus 200 ~~A~~~~~~~~~~---~p~~----~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~~g 272 (355)
++|+.+++++++. .+++ ..++..+|.++...|+ ++++...+++++++.+..........++..+|.++...|
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGD-LAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 9999999999998 4433 4568899999999998 888888888888887665444444566889999999999
Q ss_pred CHHHHHHHHHHHHHhCC
Q 040440 273 KHSEALRVYEELVKEEP 289 (355)
Q Consensus 273 ~~~~A~~~~~~~l~~~~ 289 (355)
++++|+.+++++++...
T Consensus 162 ~~~~A~~~~~~al~~~~ 178 (203)
T 3gw4_A 162 NLLEAQQHWLRARDIFA 178 (203)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 99999999999987643
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.64 E-value=1.8e-14 Score=126.57 Aligned_cols=193 Identities=11% Similarity=-0.004 Sum_probs=94.6
Q ss_pred CCHHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHcC--------CCchHHHHHHHHHHH
Q 040440 129 VSYEEKEKEIEQHLAANPND------IEALQTLMEVRIKSQKLVEAVDVIDRLIELE--------PNEFEWQLLKAQVQS 194 (355)
Q Consensus 129 ~~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--------~~~~~~~~~la~~~~ 194 (355)
+++++|+..+++++...+.. ..++..+|.++...|++++|+..++++++.. |.....+..+|.++.
T Consensus 67 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~ 146 (373)
T 1hz4_A 67 GELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLW 146 (373)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHH
Confidence 36666666666665533321 1224455666666666666666666655542 112234455566666
Q ss_pred HcCCHHHHHHHHHHHHhhCCC-----CHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHH--HHHHHH
Q 040440 195 YAGESEAAIKGFEEILRKDPL-----RVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFK--LLIAQI 267 (355)
Q Consensus 195 ~~g~~~~A~~~~~~~~~~~p~-----~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~--~~la~~ 267 (355)
..|++++|+.++++++...+. ....+..++.++...|+ ++++...+++++.+...... +...... ..++.+
T Consensus 147 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~l~~a~~~~~~~~~-~~~~~~~~~~~~~~~ 224 (373)
T 1hz4_A 147 AWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGD-LDNARSQLNRLENLLGNGKY-HSDWISNANKVRVIY 224 (373)
T ss_dssp HTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHTTSCC-CHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHhccCc-chhHHHHHHHHHHHH
Confidence 666666666666666655443 12345555566666655 33333333333333222100 0000011 123344
Q ss_pred HHHccCHHHHHHHHHHHHHhCCCC----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 040440 268 KVMESKHSEALRVYEELVKEEPRD----FRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVP 323 (355)
Q Consensus 268 ~~~~g~~~~A~~~~~~~l~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p 323 (355)
+...|++++|...+++++...+.+ ...+..++.++...|++++|...+++++...+
T Consensus 225 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~ 284 (373)
T 1hz4_A 225 WQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENAR 284 (373)
T ss_dssp HHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 555666666666666655544322 12345556666666666666666666655543
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.64 E-value=3.2e-16 Score=125.02 Aligned_cols=152 Identities=14% Similarity=-0.020 Sum_probs=80.9
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccC
Q 040440 152 LQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSD 231 (355)
Q Consensus 152 ~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 231 (355)
....+......|+++++.+.++......+.....+..+|..+...|++++|+..|+++++..|.++..... . ..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~--~----~~ 80 (198)
T 2fbn_A 7 HHHHSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQ--I----LL 80 (198)
T ss_dssp ---------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCH--H----HH
T ss_pred ccchhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchh--h----HH
Confidence 34455566677888888888876666556667788899999999999999999999999988876511000 0 00
Q ss_pred chHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHH
Q 040440 232 KKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEA 311 (355)
Q Consensus 232 ~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A 311 (355)
. ..+.+ ...++..+|.+|...|++++|+.+++++++.+|++..+++.+|.++..+|++++|
T Consensus 81 ~--------~~~~~-----------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A 141 (198)
T 2fbn_A 81 D--------KKKNI-----------EISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEA 141 (198)
T ss_dssp H--------HHHHH-----------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred H--------HHHHH-----------HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHH
Confidence 0 00000 1233444555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHhCCCChhH
Q 040440 312 EKQFEKFRRLVPRNHPY 328 (355)
Q Consensus 312 ~~~~~~~l~~~p~~~~~ 328 (355)
+.+|+++++++|++...
T Consensus 142 ~~~~~~al~~~p~~~~~ 158 (198)
T 2fbn_A 142 KENLYKAASLNPNNLDI 158 (198)
T ss_dssp HHHHHHHHHHSTTCHHH
T ss_pred HHHHHHHHHHCCCcHHH
Confidence 55555555555554433
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=99.63 E-value=9.1e-15 Score=112.81 Aligned_cols=116 Identities=17% Similarity=0.192 Sum_probs=84.8
Q ss_pred CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 040440 146 PNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVM 225 (355)
Q Consensus 146 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 225 (355)
+.+...+..+|.++...|++++|+.+|+++++.+|++..++..+|.++...|++++|+..|+++++++|++..+++.+|.
T Consensus 8 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 87 (164)
T 3sz7_A 8 TPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGL 87 (164)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 34566777788888888888888888888888888887888888888888888888888888888877776666555444
Q ss_pred HHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 040440 226 AYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIY 302 (355)
Q Consensus 226 ~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~ 302 (355)
+ |...|++++|+.+|+++++++|++...|+..+...
T Consensus 88 ~-----------------------------------------~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 123 (164)
T 3sz7_A 88 A-----------------------------------------RFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLET 123 (164)
T ss_dssp H-----------------------------------------HHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHH
T ss_pred H-----------------------------------------HHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 4 45556677777777777777777777665555443
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=99.63 E-value=1.1e-14 Score=117.38 Aligned_cols=132 Identities=10% Similarity=0.055 Sum_probs=117.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hccCCchHHHHH
Q 040440 184 EWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKL 262 (355)
Q Consensus 184 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~ 262 (355)
..++.+|.++...|++++|+..|++++ . .+..+++.+|.++...|+ +++|+..+++ ....+....++.
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~--~-~~~~~~~~lg~~~~~~g~--------~~~A~~~~~~al~~~~~~~~~~~ 75 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQ--D-PHSRICFNIGCMYTILKN--------MTEAEKAFTRSINRDKHLAVAYF 75 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSS--S-CCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHc--C-CChHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHhCccchHHHH
Confidence 357789999999999999999999985 3 378899999999999999 6666666665 444688899999
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCCCCh----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q 040440 263 LIAQIKVMESKHSEALRVYEELVKEEPRDF----------------RPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNH 326 (355)
Q Consensus 263 ~la~~~~~~g~~~~A~~~~~~~l~~~~~~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~ 326 (355)
.+|.+|...|++++|+..|+++++..|.+. .+++.+|.++...|++++|+.+|++++++.|++.
T Consensus 76 ~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 155 (213)
T 1hh8_A 76 QRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPR 155 (213)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGG
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcccc
Confidence 999999999999999999999999888776 8999999999999999999999999999999763
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.62 E-value=4.3e-15 Score=116.14 Aligned_cols=108 Identities=16% Similarity=0.152 Sum_probs=70.5
Q ss_pred cccccccchhhhhhhhhhhccC-CHHHHHHHHHHHHHcCCCCHHHHHHHHHH-HHHccCH--HHHHHHHHHHHHcCCCch
Q 040440 108 AAATVESTNESTKDTTSAREDV-SYEEKEKEIEQHLAANPNDIEALQTLMEV-RIKSQKL--VEAVDVIDRLIELEPNEF 183 (355)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~~l~~~p~~~~~~~~la~~-~~~~g~~--~~A~~~~~~~~~~~~~~~ 183 (355)
..|.....+..++.. |... ++++|+..|+++++.+|++..++..+|.+ +...|++ ++|+..++++++.+|++.
T Consensus 39 ~~p~~~~~~~~lg~~---~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~ 115 (177)
T 2e2e_A 39 ANPQNSEQWALLGEY---YLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEI 115 (177)
T ss_dssp HCCSCHHHHHHHHHH---HHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCH
T ss_pred hCCCcHHHHHHHHHH---HHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcH
Confidence 334444444444443 3333 77777777777777777777777777776 6666776 777777777777777776
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Q 040440 184 EWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVE 218 (355)
Q Consensus 184 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 218 (355)
.+++.+|.++...|++++|+..|+++++.+|++..
T Consensus 116 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 150 (177)
T 2e2e_A 116 TALMLLASDAFMQANYAQAIELWQKVMDLNSPRIN 150 (177)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSC
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCcc
Confidence 77777777777777777777777777777666543
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.62 E-value=2.6e-13 Score=123.64 Aligned_cols=175 Identities=11% Similarity=-0.001 Sum_probs=104.5
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHH----cCCHHH
Q 040440 130 SYEEKEKEIEQHLAANPNDIEALQTLMEVRIK----SQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSY----AGESEA 201 (355)
Q Consensus 130 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~ 201 (355)
++++|++.|+++.+. .++.+++.+|.+|.. .+++++|+.+|+++.+. .+..+++.+|.+|.. .+++++
T Consensus 94 ~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~ 169 (490)
T 2xm6_A 94 DYAQAVIWYKKAALK--GLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDSGQQSMGDAYFEGDGVTRDYVM 169 (490)
T ss_dssp CHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred CHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHH
Confidence 666666666666553 355666666666665 55666666666666543 345566666666655 556666
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHhc----cCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHH----ccC
Q 040440 202 AIKGFEEILRKDPLRVEAYHGLVMAYDG----SDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVM----ESK 273 (355)
Q Consensus 202 A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~----~g~ 273 (355)
|+++|+++.+. ++..+++.+|.+|.. .++ +++|++.+++... ..+...+..+|.+|.. .++
T Consensus 170 A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~--------~~~A~~~~~~a~~-~~~~~a~~~lg~~y~~g~g~~~~ 238 (490)
T 2xm6_A 170 AREWYSKAAEQ--GNVWSCNQLGYMYSRGLGVERN--------DAISAQWYRKSAT-SGDELGQLHLADMYYFGIGVTQD 238 (490)
T ss_dssp HHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCC--------HHHHHHHHHHHHH-TTCHHHHHHHHHHHHHTSSSCCC
T ss_pred HHHHHHHHHHC--CCHHHHHHHHHHHhcCCCCCcC--------HHHHHHHHHHHHH-CCCHHHHHHHHHHHHcCCCCCCC
Confidence 66666666554 355666666666655 444 4444444444111 1244556666666665 566
Q ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHH----cCCHHHHHHHHHHHHHh
Q 040440 274 HSEALRVYEELVKEEPRDFRPYLCQGIIYTL----LRKKDEAEKQFEKFRRL 321 (355)
Q Consensus 274 ~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~l~~ 321 (355)
+++|+.+|+++++. .+..+++.+|.+|.. .+++++|+.+|+++.+.
T Consensus 239 ~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~ 288 (490)
T 2xm6_A 239 YTQSRVLFSQSAEQ--GNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ 288 (490)
T ss_dssp HHHHHHHHHHHHTT--TCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHC--CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc
Confidence 77777777766554 456666777777776 67777777777776654
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.61 E-value=2.3e-14 Score=105.98 Aligned_cols=122 Identities=14% Similarity=0.085 Sum_probs=87.2
Q ss_pred CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 040440 145 NPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLV 224 (355)
Q Consensus 145 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 224 (355)
.|.+..++..+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+.+++++++.+|++..+++.+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l- 90 (133)
T 2lni_A 12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRK- 90 (133)
T ss_dssp SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHH-
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHH-
Confidence 4556677777777777777777777777777777777777777777777777777777777777777776665555444
Q ss_pred HHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 040440 225 MAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTL 304 (355)
Q Consensus 225 ~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~ 304 (355)
|.++...|++++|+.+|+++++.+|.+..++..++.++..
T Consensus 91 ----------------------------------------a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 130 (133)
T 2lni_A 91 ----------------------------------------AAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMA 130 (133)
T ss_dssp ----------------------------------------HHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHH
T ss_pred ----------------------------------------HHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 4445556677777777777777777777777777777776
Q ss_pred cCC
Q 040440 305 LRK 307 (355)
Q Consensus 305 ~g~ 307 (355)
.|+
T Consensus 131 ~~~ 133 (133)
T 2lni_A 131 QYN 133 (133)
T ss_dssp HTC
T ss_pred hcC
Confidence 653
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.9e-14 Score=106.45 Aligned_cols=120 Identities=16% Similarity=0.127 Sum_probs=106.6
Q ss_pred cccccchhhhhhhhhhhccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHH
Q 040440 110 ATVESTNESTKDTTSAREDVSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLK 189 (355)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 189 (355)
+....++..++.. .+..+++++|+..++++++.+|++..++..+|.++...|++++|+.+++++++.+|++..++..+
T Consensus 13 ~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l 90 (133)
T 2lni_A 13 PDLALMVKNKGNE--CFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRK 90 (133)
T ss_dssp SCHHHHHHHHHHH--HHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cccHHHHHHHHHH--HHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHH
Confidence 3344444444444 23445999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccC
Q 040440 190 AQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSD 231 (355)
Q Consensus 190 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 231 (355)
|.++...|++++|+..|+++++.+|.+..++..++.++...|
T Consensus 91 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 91 AAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999987665
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.61 E-value=2e-14 Score=105.56 Aligned_cols=111 Identities=14% Similarity=0.202 Sum_probs=83.5
Q ss_pred CchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHH
Q 040440 181 NEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDF 260 (355)
Q Consensus 181 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~ 260 (355)
.....+..+|..+...|++++|+..|+++++.+|++..++..+|.++
T Consensus 2 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~--------------------------------- 48 (126)
T 3upv_A 2 MKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAAL--------------------------------- 48 (126)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH---------------------------------
T ss_pred chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHH---------------------------------
Confidence 34567888888888888999998888888888888776666555555
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCChhHHHHH
Q 040440 261 KLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLV------PRNHPYREYF 332 (355)
Q Consensus 261 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~------p~~~~~~~~~ 332 (355)
...|++++|+..|+++++.+|++..+++.+|.++..+|++++|+..|+++++++ |++......+
T Consensus 49 --------~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l 118 (126)
T 3upv_A 49 --------AKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLY 118 (126)
T ss_dssp --------HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHH
T ss_pred --------HHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHH
Confidence 555667777777777777777777788888888888888888888888888777 6655444433
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=6.6e-14 Score=128.90 Aligned_cols=168 Identities=10% Similarity=0.093 Sum_probs=148.6
Q ss_pred HccCH-HHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCC----------HHHHHHHHHHHHhhCCCCHHHHHHHHHHHhc
Q 040440 161 KSQKL-VEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGE----------SEAAIKGFEEILRKDPLRVEAYHGLVMAYDG 229 (355)
Q Consensus 161 ~~g~~-~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~----------~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 229 (355)
..|++ ++|++.+++++..+|++..+|...+.++...|+ ++++++.++++++.+|++..+|+..+.++..
T Consensus 40 ~~~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~ 119 (567)
T 1dce_A 40 QAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSR 119 (567)
T ss_dssp HTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 44444 678999999999999999999999999999998 9999999999999999999999999999999
Q ss_pred cC--chHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc
Q 040440 230 SD--KKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQIKVMES-KHSEALRVYEELVKEEPRDFRPYLCQGIIYTLL 305 (355)
Q Consensus 230 ~~--~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~ 305 (355)
.+ + ++++++.+++ ...++.+..+|...+.+....| .+++++++++++++.+|.+..+|..++.++..+
T Consensus 120 l~~~~--------~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l 191 (567)
T 1dce_A 120 LPEPN--------WARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQL 191 (567)
T ss_dssp CSSCC--------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHH
T ss_pred ccccc--------HHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhh
Confidence 98 5 4566666655 4558999999999999999999 999999999999999999999999999999885
Q ss_pred --------------CCHHHHHHHHHHHHHhCCCChhHHHHHHHHH
Q 040440 306 --------------RKKDEAEKQFEKFRRLVPRNHPYREYFVDNM 336 (355)
Q Consensus 306 --------------g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~ 336 (355)
+.++++++++.+++.++|++.....+...++
T Consensus 192 ~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll 236 (567)
T 1dce_A 192 HPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLL 236 (567)
T ss_dssp SCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHH
T ss_pred cccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHH
Confidence 5679999999999999999976655544443
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=99.60 E-value=4.9e-14 Score=108.67 Aligned_cols=107 Identities=14% Similarity=0.043 Sum_probs=91.6
Q ss_pred CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHH
Q 040440 180 PNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRD 259 (355)
Q Consensus 180 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~ 259 (355)
+.+...++.+|.++...|++++|+..|+++++.+|++..+++.+
T Consensus 8 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l------------------------------------ 51 (164)
T 3sz7_A 8 TPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNR------------------------------------ 51 (164)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHH------------------------------------
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHH------------------------------------
Confidence 34556788888888888888888888888888887776655544
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChh
Q 040440 260 FKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHP 327 (355)
Q Consensus 260 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 327 (355)
|.+|...|++++|+..|+++++.+|++..+|+.+|.++..+|++++|+.+|+++++++|++..
T Consensus 52 -----~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 114 (164)
T 3sz7_A 52 -----AAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGS 114 (164)
T ss_dssp -----HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCC
T ss_pred -----HHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchH
Confidence 555566788999999999999999999999999999999999999999999999999999866
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.60 E-value=2e-14 Score=105.74 Aligned_cols=123 Identities=23% Similarity=0.250 Sum_probs=91.8
Q ss_pred CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 040440 145 NPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLV 224 (355)
Q Consensus 145 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 224 (355)
+|.+...+..+|..+...|++++|+..+++++..+|++..++..+|.++...|++++|+..+++++..+|++..++..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~-- 85 (131)
T 2vyi_A 8 DSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGR-- 85 (131)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH--
T ss_pred chhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHH--
Confidence 445566777777777777777777777777777777777777777777777777777777777777776666554444
Q ss_pred HHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 040440 225 MAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTL 304 (355)
Q Consensus 225 ~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~ 304 (355)
+|.++...|++++|+.+|+++++.+|++..++..++.++..
T Consensus 86 ---------------------------------------~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 126 (131)
T 2vyi_A 86 ---------------------------------------MGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELK 126 (131)
T ss_dssp ---------------------------------------HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred ---------------------------------------HHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHH
Confidence 45555666778888888888888888888888888888888
Q ss_pred cCCH
Q 040440 305 LRKK 308 (355)
Q Consensus 305 ~g~~ 308 (355)
.|++
T Consensus 127 ~~~~ 130 (131)
T 2vyi_A 127 LREA 130 (131)
T ss_dssp HTTC
T ss_pred HhcC
Confidence 7765
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.60 E-value=2.4e-13 Score=119.25 Aligned_cols=174 Identities=13% Similarity=-0.024 Sum_probs=145.4
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchH-----HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC--H----
Q 040440 149 IEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFE-----WQLLKAQVQSYAGESEAAIKGFEEILRKDPLR--V---- 217 (355)
Q Consensus 149 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~-----~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~--~---- 217 (355)
..++..+|.++...|++++|+..+++++...|.... ++..+|.++...|++++|+..+++++...+.. .
T Consensus 14 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 93 (373)
T 1hz4_A 14 AEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYAL 93 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 355678889999999999999999999998775432 57788999999999999999999999875432 2
Q ss_pred HHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccC--CchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC----
Q 040440 218 EAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKK--SDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRD---- 291 (355)
Q Consensus 218 ~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~---- 291 (355)
.++..++.++...|+ ++++...++++++........ +.....+..+|.++...|++++|+.++++++...+..
T Consensus 94 ~~~~~la~~~~~~G~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 172 (373)
T 1hz4_A 94 WSLIQQSEILFAQGF-LQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQ 172 (373)
T ss_dssp HHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGG
T ss_pred HHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHH
Confidence 336788999999998 888888888888887764333 5566778889999999999999999999999987642
Q ss_pred -hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 040440 292 -FRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVP 323 (355)
Q Consensus 292 -~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p 323 (355)
..++..+|.++...|++++|..++++++.+.+
T Consensus 173 ~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~ 205 (373)
T 1hz4_A 173 QLQCLAMLIQCSLARGDLDNARSQLNRLENLLG 205 (373)
T ss_dssp GHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 35788999999999999999999999998743
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=99.59 E-value=1.6e-13 Score=99.94 Aligned_cols=121 Identities=21% Similarity=0.268 Sum_probs=85.1
Q ss_pred CCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 040440 145 NPND-IEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGL 223 (355)
Q Consensus 145 ~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 223 (355)
+|.. ..++..+|.++...|++++|+..+++++...|.+..++..+|.++...|++++|+..++++++..|.+...+..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~- 82 (125)
T 1na0_A 4 DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYN- 82 (125)
T ss_dssp ---CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH-
T ss_pred CccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHH-
Confidence 3443 56677777777777777777777777777777777777777777777777777777777777766665544443
Q ss_pred HHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 040440 224 VMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYT 303 (355)
Q Consensus 224 ~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~ 303 (355)
+|.++...|++++|+..++++++.+|.+..++..++.++.
T Consensus 83 ----------------------------------------la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 122 (125)
T 1na0_A 83 ----------------------------------------LGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 122 (125)
T ss_dssp ----------------------------------------HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred ----------------------------------------HHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 4555556677777777788888878877777777777776
Q ss_pred HcC
Q 040440 304 LLR 306 (355)
Q Consensus 304 ~~g 306 (355)
..|
T Consensus 123 ~~g 125 (125)
T 1na0_A 123 KQG 125 (125)
T ss_dssp HHC
T ss_pred hcc
Confidence 554
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.59 E-value=2e-14 Score=105.77 Aligned_cols=107 Identities=15% Similarity=0.045 Sum_probs=102.0
Q ss_pred hccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHH
Q 040440 126 REDVSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKG 205 (355)
Q Consensus 126 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 205 (355)
+..+++++|+..+++++..+|++..++..+|.++...|++++|+.++++++..+|++..++..+|.++...|++++|+..
T Consensus 23 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 102 (131)
T 2vyi_A 23 MKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAY 102 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 34459999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHhccCc
Q 040440 206 FEEILRKDPLRVEAYHGLVMAYDGSDK 232 (355)
Q Consensus 206 ~~~~~~~~p~~~~~~~~l~~~~~~~~~ 232 (355)
|+++++.+|++..++..++.++...|+
T Consensus 103 ~~~~~~~~p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 103 YKKALELDPDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHHHHHSTTCHHHHHHHHHHHHHHTT
T ss_pred HHHHHhcCccchHHHHHHHHHHHHHhc
Confidence 999999999999999999999988775
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=99.58 E-value=1.7e-15 Score=136.63 Aligned_cols=150 Identities=14% Similarity=0.148 Sum_probs=120.3
Q ss_pred HccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---------------HHHHHHHHH
Q 040440 161 KSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLR---------------VEAYHGLVM 225 (355)
Q Consensus 161 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~---------------~~~~~~l~~ 225 (355)
..+++++|+..|+++++..|+....+..+|..++..|+|++|+..|+++++++|.+ ..+++++|.
T Consensus 246 ~l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~ 325 (457)
T 1kt0_A 246 TLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAM 325 (457)
T ss_dssp EEEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHH
Confidence 44566777777777777777777788888888888888888888888888888877 688999999
Q ss_pred HHhccCchHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Q 040440 226 AYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTL 304 (355)
Q Consensus 226 ~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~ 304 (355)
+|...|+ +++|+..+++ +...|.+..+++.+|.+|..+|++++|+..|+++++++|++..++..++.++..
T Consensus 326 ~~~~~g~--------~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~ 397 (457)
T 1kt0_A 326 CYLKLRE--------YTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKK 397 (457)
T ss_dssp HHHHTTC--------HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHH
T ss_pred HHHHhcC--------HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 9999999 6666666655 445788899999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHH-HHHHH
Q 040440 305 LRKKDEAEK-QFEKF 318 (355)
Q Consensus 305 ~g~~~~A~~-~~~~~ 318 (355)
.|++++|.. .++++
T Consensus 398 ~~~~~~a~~~~~~~~ 412 (457)
T 1kt0_A 398 AKEHNERDRRIYANM 412 (457)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHH
Confidence 999988765 34433
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=99.58 E-value=1.5e-13 Score=105.74 Aligned_cols=124 Identities=15% Similarity=0.116 Sum_probs=106.9
Q ss_pred hccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHH
Q 040440 126 REDVSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKG 205 (355)
Q Consensus 126 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 205 (355)
+..+++++|+..++++++.+|.+..++..+|.++...|++++|+..++++++.+|.+..+++.+|.++...|++++|+..
T Consensus 24 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~ 103 (166)
T 1a17_A 24 FKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRD 103 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhccHHHHHHH
Confidence 44569999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCHHHHHHHHHH--HhccCchHHHHHHHHHHHHHHHHh
Q 040440 206 FEEILRKDPLRVEAYHGLVMA--YDGSDKKLNEVEKRIEKAMERCKK 250 (355)
Q Consensus 206 ~~~~~~~~p~~~~~~~~l~~~--~~~~~~~~~~a~~~~~~Al~~~~~ 250 (355)
|+++++.+|++...+..++.+ +...|+ +++|...++++..++..
T Consensus 104 ~~~a~~~~p~~~~~~~~~~~~~~~~~~~~-~~~A~~~~~~~~~~~~~ 149 (166)
T 1a17_A 104 YETVVKVKPHDKDAKMKYQECNKIVKQKA-FERAIAGDEHKRSVVDS 149 (166)
T ss_dssp HHHHHHHSTTCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHHH-HHHHHHcccchHHHhcc
Confidence 999999999999888555444 666666 45555555555444443
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.58 E-value=3.6e-15 Score=118.91 Aligned_cols=133 Identities=14% Similarity=0.051 Sum_probs=95.4
Q ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCch----------------HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 040440 147 NDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEF----------------EWQLLKAQVQSYAGESEAAIKGFEEIL 210 (355)
Q Consensus 147 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~----------------~~~~~la~~~~~~g~~~~A~~~~~~~~ 210 (355)
.....+..+|..+...|++++|+..|+++++..|.+. .++..+|.++...|++++|+..+++++
T Consensus 36 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al 115 (198)
T 2fbn_A 36 QSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVL 115 (198)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 3456788899999999999999999999999888776 678888888888888888888888888
Q ss_pred hhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Q 040440 211 RKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPR 290 (355)
Q Consensus 211 ~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~ 290 (355)
+.+|++..+++.+|.++ ...|++++|+..|+++++.+|+
T Consensus 116 ~~~p~~~~~~~~lg~~~-----------------------------------------~~~~~~~~A~~~~~~al~~~p~ 154 (198)
T 2fbn_A 116 KIDKNNVKALYKLGVAN-----------------------------------------MYFGFLEEAKENLYKAASLNPN 154 (198)
T ss_dssp HHSTTCHHHHHHHHHHH-----------------------------------------HHHTCHHHHHHHHHHHHHHSTT
T ss_pred HhCcccHHHHHHHHHHH-----------------------------------------HHcccHHHHHHHHHHHHHHCCC
Confidence 88777766655555444 4556677777777777777777
Q ss_pred ChHHHHHHHHHHHHcCCHHHHH-HHHHHHHH
Q 040440 291 DFRPYLCQGIIYTLLRKKDEAE-KQFEKFRR 320 (355)
Q Consensus 291 ~~~~~~~l~~~~~~~g~~~~A~-~~~~~~l~ 320 (355)
+..++..++.++...|+.+++. ..|.+.+.
T Consensus 155 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 155 NLDIRNSYELCVNKLKEARKKDKLTFGGMFD 185 (198)
T ss_dssp CHHHHHHHHHHHHHHHHHHC-----------
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 7777777777777777776666 44444433
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=99.57 E-value=2.9e-15 Score=135.08 Aligned_cols=148 Identities=17% Similarity=0.114 Sum_probs=128.9
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCc---------------hHHHHHHHHHHH
Q 040440 130 SYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNE---------------FEWQLLKAQVQS 194 (355)
Q Consensus 130 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~---------------~~~~~~la~~~~ 194 (355)
++++|+..++..++..|+....+..+|..++..|+|++|+..|+++++.+|.+ ..++.++|.++.
T Consensus 249 ~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~ 328 (457)
T 1kt0_A 249 SFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYL 328 (457)
T ss_dssp EEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 66778888888888888899999999999999999999999999999999988 589999999999
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHHHccC
Q 040440 195 YAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQIKVMESK 273 (355)
Q Consensus 195 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~~~g~ 273 (355)
.+|++++|+..|+++++++|++..+++.+|.+|...|+ +++|+..+++ +...|.+..++..++.++...++
T Consensus 329 ~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~--------~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~ 400 (457)
T 1kt0_A 329 KLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNE--------FESAKGDFEKVLEVNPQNKAARLQISMCQKKAKE 400 (457)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHTTC----CHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccC--------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999 7777777777 56678888999999999999999
Q ss_pred HHHHHH-HHHHHH
Q 040440 274 HSEALR-VYEELV 285 (355)
Q Consensus 274 ~~~A~~-~~~~~l 285 (355)
+++|.. .|.+++
T Consensus 401 ~~~a~~~~~~~~f 413 (457)
T 1kt0_A 401 HNERDRRIYANMF 413 (457)
T ss_dssp HHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHH
Confidence 988874 344443
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.57 E-value=3.6e-13 Score=121.30 Aligned_cols=176 Identities=12% Similarity=0.006 Sum_probs=155.2
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc----cCHHHHHHHHHHHHHcCCCchHHHHHHHHH-H--HHcCCHHHH
Q 040440 130 SYEEKEKEIEQHLAANPNDIEALQTLMEVRIKS----QKLVEAVDVIDRLIELEPNEFEWQLLKAQV-Q--SYAGESEAA 202 (355)
Q Consensus 130 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~~~~la~~-~--~~~g~~~~A 202 (355)
++++|+..|+++.+..+.+...++.+|.+|... +++++|+.+|+++. |.++.+++.+|.+ + ...+++++|
T Consensus 194 ~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A 270 (452)
T 3e4b_A 194 QQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVSLAQLLYDFPELGDVEQM 270 (452)
T ss_dssp HHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGCCHHHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHHH
Confidence 899999999999999999999999999999765 79999999999988 8889999999998 4 568999999
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHhccC-----chHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHH----ccC
Q 040440 203 IKGFEEILRKDPLRVEAYHGLVMAYDGSD-----KKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVM----ESK 273 (355)
Q Consensus 203 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~~-----~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~----~g~ 273 (355)
+.+|+++.+. +++.+++.+|.+|. .| + +++|+.++++.. +.+...++.+|.+|.. ..+
T Consensus 271 ~~~~~~Aa~~--g~~~A~~~Lg~~y~-~G~g~~~d--------~~~A~~~~~~Aa--~g~~~A~~~Lg~~y~~G~g~~~d 337 (452)
T 3e4b_A 271 MKYLDNGRAA--DQPRAELLLGKLYY-EGKWVPAD--------AKAAEAHFEKAV--GREVAADYYLGQIYRRGYLGKVY 337 (452)
T ss_dssp HHHHHHHHHT--TCHHHHHHHHHHHH-HCSSSCCC--------HHHHHHHHHTTT--TTCHHHHHHHHHHHHTTTTSSCC
T ss_pred HHHHHHHHHC--CCHHHHHHHHHHHH-cCCCCCCC--------HHHHHHHHHHHh--CCCHHHHHHHHHHHHCCCCCCcC
Confidence 9999999875 48999999999998 44 6 888888888855 7888999999999987 449
Q ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCC
Q 040440 274 HSEALRVYEELVKEEPRDFRPYLCQGIIYTL----LRKKDEAEKQFEKFRRLVP 323 (355)
Q Consensus 274 ~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~l~~~p 323 (355)
+++|+.+|+++.+ ..+..+.+.+|.+|.. .++.++|..+|+++.+...
T Consensus 338 ~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~ 389 (452)
T 3e4b_A 338 PQKALDHLLTAAR--NGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDT 389 (452)
T ss_dssp HHHHHHHHHHHHT--TTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHh--hChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCC
Confidence 9999999999976 4578899999999985 4689999999999988654
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.56 E-value=2.8e-13 Score=121.95 Aligned_cols=174 Identities=18% Similarity=0.146 Sum_probs=145.0
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcc---CHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHc----CCHHHH
Q 040440 130 SYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQ---KLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYA----GESEAA 202 (355)
Q Consensus 130 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~----g~~~~A 202 (355)
+.+++..+++.+...+|. +++.+|.+|...| ++++|+.+|+++.+.++.....++.+|.+|... +++++|
T Consensus 160 ~~~~a~~~~~~a~~~~~~---a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A 236 (452)
T 3e4b_A 160 HLDDVERICKAALNTTDI---CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTA 236 (452)
T ss_dssp GHHHHHHHHHHHTTTCTT---HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHH
T ss_pred CHHHHHHHHHHHHcCCHH---HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHH
Confidence 445555666666555554 9999999999999 999999999999999999988889999998765 799999
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHH-H--hccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHcc-----CH
Q 040440 203 IKGFEEILRKDPLRVEAYHGLVMA-Y--DGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVMES-----KH 274 (355)
Q Consensus 203 ~~~~~~~~~~~p~~~~~~~~l~~~-~--~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~~g-----~~ 274 (355)
+.+|+++. |+++.+++.+|.+ + ...++ +++|++++++... ..+...++.+|.+|. .| ++
T Consensus 237 ~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d--------~~~A~~~~~~Aa~-~g~~~A~~~Lg~~y~-~G~g~~~d~ 303 (452)
T 3e4b_A 237 QALLEKIA---PGYPASWVSLAQLLYDFPELGD--------VEQMMKYLDNGRA-ADQPRAELLLGKLYY-EGKWVPADA 303 (452)
T ss_dssp HHHHHHHG---GGSTHHHHHHHHHHHHSGGGCC--------HHHHHHHHHHHHH-TTCHHHHHHHHHHHH-HCSSSCCCH
T ss_pred HHHHHHHc---CCCHHHHHHHHHHHHhCCCCCC--------HHHHHHHHHHHHH-CCCHHHHHHHHHHHH-cCCCCCCCH
Confidence 99999998 8999999999998 4 45556 5666666655221 247888999999998 56 99
Q ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhC
Q 040440 275 SEALRVYEELVKEEPRDFRPYLCQGIIYTL----LRKKDEAEKQFEKFRRLV 322 (355)
Q Consensus 275 ~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~l~~~ 322 (355)
++|+.+|+++. +.++.+++++|.+|.. ..++++|..+|+++.+..
T Consensus 304 ~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 352 (452)
T 3e4b_A 304 KAAEAHFEKAV---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG 352 (452)
T ss_dssp HHHHHHHHTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC
Confidence 99999999998 8899999999999987 449999999999998754
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=99.55 E-value=1.4e-13 Score=102.49 Aligned_cols=103 Identities=17% Similarity=0.076 Sum_probs=82.4
Q ss_pred cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 040440 144 ANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGL 223 (355)
Q Consensus 144 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 223 (355)
.+|.++..+..+|.++...|++++|+..|++++..+|++..++..+|.++...|++++|+..|+++++.+|++..+++.+
T Consensus 4 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 83 (137)
T 3q49_B 4 MKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL 83 (137)
T ss_dssp --CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHH
Confidence 45678888999999999999999999999999999999999999999999999999999999999999998888888777
Q ss_pred HHHHhccCchHHHHHHHHHHHHHH
Q 040440 224 VMAYDGSDKKLNEVEKRIEKAMER 247 (355)
Q Consensus 224 ~~~~~~~~~~~~~a~~~~~~Al~~ 247 (355)
|.++...|+ ++.|...++++++.
T Consensus 84 ~~~~~~~~~-~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 84 GQCQLEMES-YDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHHTTC-HHHHHHHHHHHHHH
T ss_pred HHHHHHHhh-HHHHHHHHHHHHHH
Confidence 777766666 33333333333333
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=99.55 E-value=5.1e-14 Score=118.61 Aligned_cols=164 Identities=11% Similarity=0.034 Sum_probs=78.6
Q ss_pred ccccccccchhhhhhhhhhhccC-CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHH
Q 040440 107 AAAATVESTNESTKDTTSAREDV-SYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEW 185 (355)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 185 (355)
...|.....+..++.. |... ++++|+..++++++.+|++..+++.+|.+|...|++++|+..|+++++++|++...
T Consensus 32 ~~~p~~~~~~~~la~~---~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~ 108 (281)
T 2c2l_A 32 TRNPLVAVYYTNRALC---YLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLN 108 (281)
T ss_dssp HHCSCCHHHHHHHHHH---HHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCC
T ss_pred HhCCccHHHHHHHHHH---HHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhh
Confidence 3344444444444433 3333 66666666666666666666666666666666666666666666666665543211
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hccCCchHHHHHHH
Q 040440 186 QLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLI 264 (355)
Q Consensus 186 ~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~l 264 (355)
+........ +..++...........+.+......++.++ .|+ +++|++.+++ ....|.+......+
T Consensus 109 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~i~~~l~~l~--~~~--------~~~A~~~~~~al~~~p~~~~~~~~l 175 (281)
T 2c2l_A 109 FGDDIPSAL---RIAKKKRWNSIEERRIHQESELHSYLTRLI--AAE--------RERELEECQRNHEGHEDDGHIRAQQ 175 (281)
T ss_dssp CCSHHHHHH---HHHHHHHHHHHHHTCCCCCCHHHHHHHHHH--HHH--------HHHHHTTTSGGGTTTSCHHHHTHHH
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHhhhHHHHHHHHHHH--HHH--------HHHHHHHHHhhhccccchhhhhhHH
Confidence 111111111 111122222222233444444444444433 233 5555555544 34445555555555
Q ss_pred HHHHHHc-cCHHHHHHHHHHHHH
Q 040440 265 AQIKVME-SKHSEALRVYEELVK 286 (355)
Q Consensus 265 a~~~~~~-g~~~~A~~~~~~~l~ 286 (355)
+.++... +.+++|.+.|.++.+
T Consensus 176 ~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 176 ACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHHHHHHHHHhhhc
Confidence 5555444 455666666665543
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.55 E-value=8.9e-14 Score=102.28 Aligned_cols=101 Identities=14% Similarity=0.105 Sum_probs=81.4
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHH
Q 040440 183 FEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKL 262 (355)
Q Consensus 183 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~ 262 (355)
..++..+|..++..|+|++|+..|+++++++|++..++..+|.+|
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~----------------------------------- 52 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVY----------------------------------- 52 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-----------------------------------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHH-----------------------------------
Confidence 446778999999999999999999999999888877776666555
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCCCC-------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 040440 263 LIAQIKVMESKHSEALRVYEELVKEEPRD-------FRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPR 324 (355)
Q Consensus 263 ~la~~~~~~g~~~~A~~~~~~~l~~~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~ 324 (355)
..+|++++|+..|+++++++|++ ..++..+|.++..+|++++|+++|++++...|+
T Consensus 53 ------~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 53 ------FEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp ------HHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred ------HHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence 44566666666677777665543 247888999999999999999999999999885
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.55 E-value=2e-13 Score=122.24 Aligned_cols=195 Identities=13% Similarity=0.029 Sum_probs=160.6
Q ss_pred hccCCHHHHHHHHHHHHHcCCCCH-----------------HHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCch-----
Q 040440 126 REDVSYEEKEKEIEQHLAANPNDI-----------------EALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEF----- 183 (355)
Q Consensus 126 ~~~~~~~~A~~~~~~~l~~~p~~~-----------------~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~----- 183 (355)
...++|++|++.|.++++..+... .++..+|.+|...|++++|++++.+++...+...
T Consensus 15 ~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 94 (434)
T 4b4t_Q 15 VNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTV 94 (434)
T ss_dssp HHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHH
T ss_pred HHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHH
Confidence 555799999999999999887642 3688999999999999999999999987644332
Q ss_pred -HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC------CCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCc
Q 040440 184 -EWQLLKAQVQSYAGESEAAIKGFEEILRKD------PLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSD 256 (355)
Q Consensus 184 -~~~~~la~~~~~~g~~~~A~~~~~~~~~~~------p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~ 256 (355)
.+...++.++...|++++|+.++++++... +....++..+|.+|...|+ +++|...+++++..+......+.
T Consensus 95 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~l~~~~~~~~~~~~~~~ 173 (434)
T 4b4t_Q 95 KVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQ-YKDSLALINDLLREFKKLDDKPS 173 (434)
T ss_dssp HHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHTTSSCSTH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccC-hHHHHHHHHHHHHHHHhcccchh
Confidence 245667888888999999999999998763 2335678899999999999 66677777777666666666677
Q ss_pred hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC---CC----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 040440 257 LRDFKLLIAQIKVMESKHSEALRVYEELVKEEP---RD----FRPYLCQGIIYTLLRKKDEAEKQFEKFRRL 321 (355)
Q Consensus 257 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~---~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 321 (355)
...++..++.+|...|++++|..++++++...+ .. ...+..+|.++...|++++|..+|.+++..
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~ 245 (434)
T 4b4t_Q 174 LVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFES 245 (434)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 788999999999999999999999999987532 22 356778899999999999999999999874
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.54 E-value=5.5e-14 Score=102.43 Aligned_cols=93 Identities=16% Similarity=0.145 Sum_probs=80.0
Q ss_pred hccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHH
Q 040440 126 REDVSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKG 205 (355)
Q Consensus 126 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 205 (355)
...+++++|+..++++++.+|++..+|+.+|.++...|++++|+..|+++++++|++..++..+|.++...|++++|+..
T Consensus 28 ~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~ 107 (121)
T 1hxi_A 28 LKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALAS 107 (121)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 44459999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCHH
Q 040440 206 FEEILRKDPLRVE 218 (355)
Q Consensus 206 ~~~~~~~~p~~~~ 218 (355)
|+++++.+|++..
T Consensus 108 ~~~al~~~P~~~~ 120 (121)
T 1hxi_A 108 LRAWLLSQPQYEQ 120 (121)
T ss_dssp HHHHHC-------
T ss_pred HHHHHHhCcCCCC
Confidence 9999998887643
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.54 E-value=4.4e-13 Score=100.96 Aligned_cols=80 Identities=14% Similarity=0.060 Sum_probs=49.3
Q ss_pred CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCc---hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Q 040440 145 NPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNE---FEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYH 221 (355)
Q Consensus 145 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 221 (355)
+|.+...+..+|..+...|++++|+..|+++++.+|++ ..++..+|.++...|++++|+..++++++.+|++..+++
T Consensus 24 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 103 (148)
T 2dba_A 24 GASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALY 103 (148)
T ss_dssp TCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHH
T ss_pred chHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHH
Confidence 34556666666666666666666666666666666655 556666666666666666666666666666555544444
Q ss_pred HHH
Q 040440 222 GLV 224 (355)
Q Consensus 222 ~l~ 224 (355)
.+|
T Consensus 104 ~~a 106 (148)
T 2dba_A 104 RRS 106 (148)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=99.53 E-value=8.4e-14 Score=104.31 Aligned_cols=108 Identities=19% Similarity=0.217 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-------CH-----HHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhc
Q 040440 185 WQLLKAQVQSYAGESEAAIKGFEEILRKDPL-------RV-----EAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEK 252 (355)
Q Consensus 185 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~-------~~-----~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~ 252 (355)
.+..+|..+...|+|++|+..|+++++++|+ +. .+|.++|.++...|+ +++|+..+
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr--------~~eAl~~~---- 80 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRS--------FDEALHSA---- 80 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTC--------HHHHHHHH----
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCC--------HHHHHHHH----
Confidence 3444555555555555555555555555554 32 377777777777777 44444432
Q ss_pred cCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHH----HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q 040440 253 KKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPY----LCQGIIYTLLRKKDEAEKQFEKFRRLVPRNH 326 (355)
Q Consensus 253 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~ 326 (355)
++|+++|++.++++|++..+| +++|.++..+|++++|+..|+++++++|++.
T Consensus 81 ----------------------~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~ 136 (159)
T 2hr2_A 81 ----------------------DKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERK 136 (159)
T ss_dssp ----------------------HHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred ----------------------HHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcH
Confidence 233333555556677777777 7777777777777777777777777776663
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.53 E-value=1.9e-13 Score=104.50 Aligned_cols=139 Identities=14% Similarity=0.029 Sum_probs=88.6
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCch------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 040440 149 IEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEF------EWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHG 222 (355)
Q Consensus 149 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~------~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 222 (355)
..++..+|.++...|++++|+.+++++++..+... .++..+|.++...|++++|+.+++++++..+..
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~------ 82 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQL------ 82 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT------
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh------
Confidence 45677888888888888888888888887644222 367778888888888888888888877654321
Q ss_pred HHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC------ChHHHH
Q 040440 223 LVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPR------DFRPYL 296 (355)
Q Consensus 223 l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~------~~~~~~ 296 (355)
........++..+|.++...|++++|+.+++++++..+. ...++.
T Consensus 83 -----------------------------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 133 (164)
T 3ro3_A 83 -----------------------------KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACW 133 (164)
T ss_dssp -----------------------------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred -----------------------------CCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHH
Confidence 111122334444555556666666666666665544211 134556
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC
Q 040440 297 CQGIIYTLLRKKDEAEKQFEKFRRLV 322 (355)
Q Consensus 297 ~l~~~~~~~g~~~~A~~~~~~~l~~~ 322 (355)
.+|.++...|++++|..++++++++.
T Consensus 134 ~la~~~~~~g~~~~A~~~~~~a~~~~ 159 (164)
T 3ro3_A 134 SLGNAYTALGNHDQAMHFAEKHLEIS 159 (164)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 66666666666666666666666554
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=99.53 E-value=2e-13 Score=101.60 Aligned_cols=106 Identities=10% Similarity=0.075 Sum_probs=83.7
Q ss_pred cCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCch
Q 040440 178 LEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDL 257 (355)
Q Consensus 178 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~ 257 (355)
.++.+...++.+|.++...|++++|+..|++++..+|++..++..+|
T Consensus 4 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~--------------------------------- 50 (137)
T 3q49_B 4 MKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRA--------------------------------- 50 (137)
T ss_dssp --CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH---------------------------------
T ss_pred CccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHH---------------------------------
Confidence 35667778888888888888888888888888888877766655554
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 040440 258 RDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPR 324 (355)
Q Consensus 258 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~ 324 (355)
.++...|++++|+..++++++.+|++..+++.+|.++...|++++|+..|+++++++|+
T Consensus 51 --------~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 51 --------LCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp --------HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred --------HHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChh
Confidence 44455677788888888888888888888888888888888888888888888888776
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.53 E-value=4.2e-13 Score=108.07 Aligned_cols=142 Identities=13% Similarity=0.111 Sum_probs=122.3
Q ss_pred HHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccC----chHHHHHHHH
Q 040440 166 VEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSD----KKLNEVEKRI 241 (355)
Q Consensus 166 ~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~----~~~~~a~~~~ 241 (355)
.+|+.+|+++.+. .++.+++.+|.+|...+++++|+.+|+++.+. +++.+++.+|.+|.. + + +
T Consensus 3 ~eA~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~--------~ 69 (212)
T 3rjv_A 3 TEPGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQAD--------Y 69 (212)
T ss_dssp -CTTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCC--------H
T ss_pred chHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCC--------H
Confidence 4578899999875 68899999999999999999999999999875 689999999999998 5 5 5
Q ss_pred HHHHHHHHhhccCCchHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCC--CChHHHHHHHHHHHH----cCCHHHH
Q 040440 242 EKAMERCKKEKKKSDLRDFKLLIAQIKVM----ESKHSEALRVYEELVKEEP--RDFRPYLCQGIIYTL----LRKKDEA 311 (355)
Q Consensus 242 ~~Al~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~~--~~~~~~~~l~~~~~~----~g~~~~A 311 (355)
++|++++++.. ...+...++.+|.+|.. .+++++|+.+|+++.+..+ .++.+++.+|.+|.. .+++++|
T Consensus 70 ~~A~~~~~~A~-~~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A 148 (212)
T 3rjv_A 70 PQARQLAEKAV-EAGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKA 148 (212)
T ss_dssp HHHHHHHHHHH-HTTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHH
T ss_pred HHHHHHHHHHH-HCCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 55555555521 24578889999999987 8999999999999998877 348999999999999 8999999
Q ss_pred HHHHHHHHHh
Q 040440 312 EKQFEKFRRL 321 (355)
Q Consensus 312 ~~~~~~~l~~ 321 (355)
+.+|+++.++
T Consensus 149 ~~~~~~A~~~ 158 (212)
T 3rjv_A 149 SEYFKGSSSL 158 (212)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHc
Confidence 9999999998
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.53 E-value=4.2e-13 Score=103.14 Aligned_cols=130 Identities=15% Similarity=0.038 Sum_probs=99.1
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHH
Q 040440 183 FEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKL 262 (355)
Q Consensus 183 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~ 262 (355)
...+..+|..++..|+|++|+..|++++...+..... ....+ -+ . ....+....++.
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~--------~~~~~--------~~-~------~~~~~~~~~~~~ 67 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILR--------EKPGE--------PE-W------VELDRKNIPLYA 67 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHT--------SCTTS--------HH-H------HHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccc--------CCCCH--------HH-H------HHHHHHHHHHHH
Confidence 4567788888888888888888888888753211000 00000 00 0 001345677899
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh-hHHHHHHHH
Q 040440 263 LIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNH-PYREYFVDN 335 (355)
Q Consensus 263 ~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~-~~~~~~~~~ 335 (355)
.+|.+|...|++++|+..+++++..+|++..+|+.+|.++..+|++++|+..|++++.++|++. .....+..+
T Consensus 68 nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~ 141 (162)
T 3rkv_A 68 NMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIV 141 (162)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999986 444333333
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.52 E-value=1.9e-13 Score=99.58 Aligned_cols=92 Identities=15% Similarity=0.077 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhcc
Q 040440 151 ALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGS 230 (355)
Q Consensus 151 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 230 (355)
.++.+|..+...|++++|+..|+++++.+|++..+|+.+|.++...|++++|+..|+++++++|++..+++.+|.++...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHHHHHHHHHh
Q 040440 231 DKKLNEVEKRIEKAMERCKK 250 (355)
Q Consensus 231 ~~~~~~a~~~~~~Al~~~~~ 250 (355)
|+ +++|+..+++
T Consensus 99 g~--------~~~A~~~~~~ 110 (121)
T 1hxi_A 99 HN--------ANAALASLRA 110 (121)
T ss_dssp HH--------HHHHHHHHHH
T ss_pred CC--------HHHHHHHHHH
Confidence 98 6666666555
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.52 E-value=9.9e-14 Score=103.70 Aligned_cols=92 Identities=15% Similarity=0.218 Sum_probs=85.8
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCH----------HHHHHHHHHHHHcCCCchHHHHHHHHHHHHcC--
Q 040440 130 SYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKL----------VEAVDVIDRLIELEPNEFEWQLLKAQVQSYAG-- 197 (355)
Q Consensus 130 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~----------~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g-- 197 (355)
.|++|++.++++++.+|+++++|.++|.++...+++ ++|+..|+++++++|+...+|+.+|.+|..+|
T Consensus 17 ~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l 96 (158)
T 1zu2_A 17 LFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFL 96 (158)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhccc
Confidence 789999999999999999999999999999999875 59999999999999999999999999999885
Q ss_pred ---------CHHHHHHHHHHHHhhCCCCHHHHH
Q 040440 198 ---------ESEAAIKGFEEILRKDPLRVEAYH 221 (355)
Q Consensus 198 ---------~~~~A~~~~~~~~~~~p~~~~~~~ 221 (355)
++++|+++|+++++++|++...+.
T Consensus 97 ~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~ 129 (158)
T 1zu2_A 97 TPDETEAKHNFDLATQFFQQAVDEQPDNTHYLK 129 (158)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CcchhhhhccHHHHHHHHHHHHHhCCCCHHHHH
Confidence 899999999999999999865443
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.52 E-value=2.3e-12 Score=125.36 Aligned_cols=171 Identities=11% Similarity=-0.040 Sum_probs=131.2
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 040440 130 SYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEI 209 (355)
Q Consensus 130 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 209 (355)
++++|+++++++ +.+.+|..+|.++...|++++|++.|.++ ++...|..++.++.+.|++++|+++|..+
T Consensus 1091 nldrAiE~Aerv-----n~p~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mA 1160 (1630)
T 1xi4_A 1091 NLDRAYEFAERC-----NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMA 1160 (1630)
T ss_pred hHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 444444444433 67899999999999999999999999885 78889999999999999999999999888
Q ss_pred HhhCCCC---------------------------HHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHH
Q 040440 210 LRKDPLR---------------------------VEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKL 262 (355)
Q Consensus 210 ~~~~p~~---------------------------~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~ 262 (355)
.+..++. ...+..+|..+...|+ |++|+.+|.. ...|.
T Consensus 1161 rk~~~e~~Idt~LafaYAKl~rleele~fI~~~n~ad~~~iGd~le~eg~--------YeeA~~~Y~k-------A~ny~ 1225 (1630)
T 1xi4_A 1161 RKKARESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKM--------YDAAKLLYNN-------VSNFG 1225 (1630)
T ss_pred HhhcccccccHHHHHHHHhhcCHHHHHHHHhCCCHHHHHHHHHHHHhcCC--------HHHHHHHHHh-------hhHHH
Confidence 7665331 1223445555555555 6777777665 34788
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCC-------------------------CChHHHHHHHHHHHHcCCHHHHHHHHHH
Q 040440 263 LIAQIKVMESKHSEALRVYEELVKEEP-------------------------RDFRPYLCQGIIYTLLRKKDEAEKQFEK 317 (355)
Q Consensus 263 ~la~~~~~~g~~~~A~~~~~~~l~~~~-------------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 317 (355)
.+|.+|.++|++++|++.++++..... .+++.+..++..|...|.+++|+.+++.
T Consensus 1226 rLA~tLvkLge~q~AIEaarKA~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~ 1305 (1630)
T 1xi4_A 1226 RLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEA 1305 (1630)
T ss_pred HHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 889999999999999999988743221 1333455677789999999999999999
Q ss_pred HHHhCCCC
Q 040440 318 FRRLVPRN 325 (355)
Q Consensus 318 ~l~~~p~~ 325 (355)
++.+++.+
T Consensus 1306 aL~LeraH 1313 (1630)
T 1xi4_A 1306 ALGLERAH 1313 (1630)
T ss_pred HhccChhH
Confidence 99998766
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=99.52 E-value=3.5e-15 Score=135.06 Aligned_cols=124 Identities=19% Similarity=0.139 Sum_probs=65.4
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccC
Q 040440 152 LQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSD 231 (355)
Q Consensus 152 ~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 231 (355)
+..+|..+...|++++|++.|+++++.+|++..++..+|.++...|++++|++.|+++++++|++..+++.+|.+
T Consensus 9 ~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~----- 83 (477)
T 1wao_1 9 LKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAAS----- 83 (477)
T ss_dssp SSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHH-----
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-----
Confidence 344455555555556666666655555555555555555555555666666555555555555554444333333
Q ss_pred chHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHH--HHHcCCHH
Q 040440 232 KKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGII--YTLLRKKD 309 (355)
Q Consensus 232 ~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~--~~~~g~~~ 309 (355)
|..+|++++|++.|+++++.+|++..++..++.+ +...|+++
T Consensus 84 ------------------------------------~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~ 127 (477)
T 1wao_1 84 ------------------------------------NMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFE 127 (477)
T ss_dssp ------------------------------------HHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHC
T ss_pred ------------------------------------HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 3334555555555555555555555555555555 55555555
Q ss_pred HHHHHHH
Q 040440 310 EAEKQFE 316 (355)
Q Consensus 310 ~A~~~~~ 316 (355)
+|++.++
T Consensus 128 ~A~~~~~ 134 (477)
T 1wao_1 128 RAIAGDE 134 (477)
T ss_dssp CC-----
T ss_pred HHhcccc
Confidence 5555555
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.52 E-value=6.6e-14 Score=104.64 Aligned_cols=111 Identities=17% Similarity=0.155 Sum_probs=93.0
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHccC
Q 040440 194 SYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVMESK 273 (355)
Q Consensus 194 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 273 (355)
.+.+.|++|++.++++++++|++.++|..+|.++...++ ++.+.+.. +.
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~--------~~~g~~al-----------------------~~ 61 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQ--------FHSISDAK-----------------------QM 61 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH--------HSCHHHHH-----------------------HH
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcc--------cchhhhhH-----------------------hH
Confidence 356778999999999999999999999999999888776 44443321 34
Q ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHhCCCChhHHHHHHHH
Q 040440 274 HSEALRVYEELVKEEPRDFRPYLCQGIIYTLLR-----------KKDEAEKQFEKFRRLVPRNHPYREYFVDN 335 (355)
Q Consensus 274 ~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g-----------~~~~A~~~~~~~l~~~p~~~~~~~~~~~~ 335 (355)
+++|+..|+++++++|++..+|+++|.+|..+| ++++|+.+|+++++++|++..++..+...
T Consensus 62 ~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~~ 134 (158)
T 1zu2_A 62 IQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMT 134 (158)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 899999999999999999999999999999885 89999999999999999987766554433
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.51 E-value=8.3e-13 Score=95.09 Aligned_cols=112 Identities=16% Similarity=0.148 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHh
Q 040440 149 IEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYD 228 (355)
Q Consensus 149 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 228 (355)
+..+..+|..+...|++++|+..|++++..+|.+..++..+|.++...|++++|+..++++++.+|++..++..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~----- 78 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRK----- 78 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHH-----
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHH-----
Confidence 445555666666666666666666666666666555666666666666666666666666665555544443333
Q ss_pred ccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 040440 229 GSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGII 301 (355)
Q Consensus 229 ~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~ 301 (355)
|.++...|++++|+..++++++.+|++..++..++.+
T Consensus 79 ------------------------------------a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 79 ------------------------------------AAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115 (118)
T ss_dssp ------------------------------------HHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred ------------------------------------HHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 3334445555666666666666666665555555544
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.51 E-value=1.2e-12 Score=94.28 Aligned_cols=102 Identities=14% Similarity=0.081 Sum_probs=96.9
Q ss_pred hccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHH
Q 040440 126 REDVSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKG 205 (355)
Q Consensus 126 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 205 (355)
+..+++++|+..+++++..+|++..++..+|.++...|++++|+..++++++.+|++..++..+|.++...|++++|+..
T Consensus 15 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~ 94 (118)
T 1elw_A 15 LSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRT 94 (118)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHH
Confidence 34459999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCHHHHHHHHHHH
Q 040440 206 FEEILRKDPLRVEAYHGLVMAY 227 (355)
Q Consensus 206 ~~~~~~~~p~~~~~~~~l~~~~ 227 (355)
|+++++.+|++..++..++.+.
T Consensus 95 ~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 95 YEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHhh
Confidence 9999999999999998888765
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.50 E-value=2.9e-13 Score=104.06 Aligned_cols=82 Identities=16% Similarity=0.120 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHc------------------CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 040440 149 IEALQTLMEVRIKSQKLVEAVDVIDRLIEL------------------EPNEFEWQLLKAQVQSYAGESEAAIKGFEEIL 210 (355)
Q Consensus 149 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~------------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 210 (355)
+..+..+|..++..|+|++|+..|++++.. +|....++..+|.++...|++++|+..+++++
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 455677777777777777777777777776 45555667777777777777777777777777
Q ss_pred hhCCCCHHHHHHHHHHHhcc
Q 040440 211 RKDPLRVEAYHGLVMAYDGS 230 (355)
Q Consensus 211 ~~~p~~~~~~~~l~~~~~~~ 230 (355)
+++|++..+++.+|.++...
T Consensus 91 ~~~p~~~~a~~~~g~~~~~~ 110 (162)
T 3rkv_A 91 KREETNEKALFRRAKARIAA 110 (162)
T ss_dssp HHSTTCHHHHHHHHHHHHHT
T ss_pred hcCCcchHHHHHHHHHHHHH
Confidence 77776666655555554433
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.50 E-value=3.8e-13 Score=102.72 Aligned_cols=104 Identities=14% Similarity=0.028 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHH
Q 040440 184 EWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLL 263 (355)
Q Consensus 184 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~ 263 (355)
.++..+|.++...|++++|+.+++++++..+. .........++..
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-----------------------------------~~~~~~~~~~~~~ 54 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKE-----------------------------------FGDKAAERIAYSN 54 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-----------------------------------HTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH-----------------------------------hCCchHHHHHHHH
Confidence 35677777788888888888888777765332 1111222456677
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCCC------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 040440 264 IAQIKVMESKHSEALRVYEELVKEEPRD------FRPYLCQGIIYTLLRKKDEAEKQFEKFRRLV 322 (355)
Q Consensus 264 la~~~~~~g~~~~A~~~~~~~l~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 322 (355)
+|.++...|++++|+.++++++...+.. ..++..+|.++...|++++|+.++++++++.
T Consensus 55 l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 119 (164)
T 3ro3_A 55 LGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIA 119 (164)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 7888999999999999999998765432 5678999999999999999999999999874
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=99.49 E-value=1.2e-12 Score=95.14 Aligned_cols=105 Identities=25% Similarity=0.293 Sum_probs=99.1
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHH
Q 040440 127 EDVSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGF 206 (355)
Q Consensus 127 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 206 (355)
..+++++|++.+++++..+|++..++..+|.++...|++++|+.+++++++..|.+...+..+|.++...|++++|+..|
T Consensus 21 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 100 (125)
T 1na0_A 21 KQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYY 100 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 34599999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhCCCCHHHHHHHHHHHhccC
Q 040440 207 EEILRKDPLRVEAYHGLVMAYDGSD 231 (355)
Q Consensus 207 ~~~~~~~p~~~~~~~~l~~~~~~~~ 231 (355)
+++++.+|++..++..++.++...|
T Consensus 101 ~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 101 QKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 9999999999999999998876543
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=99.49 E-value=2.2e-12 Score=96.68 Aligned_cols=100 Identities=13% Similarity=0.092 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC-------chH-----HHHHHHHHHHHcCCHHHHHHHHHHHHhh-----
Q 040440 150 EALQTLMEVRIKSQKLVEAVDVIDRLIELEPN-------EFE-----WQLLKAQVQSYAGESEAAIKGFEEILRK----- 212 (355)
Q Consensus 150 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-------~~~-----~~~~la~~~~~~g~~~~A~~~~~~~~~~----- 212 (355)
..+..+|..+...|+|++|+..|+++++++|+ +.. +|.++|.++..+|+|++|+..|++++++
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~ 91 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG 91 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence 44566666666667777777777777666666 322 6666666666777777777777777666
Q ss_pred --CCCCHHHH----HHHHHHHhccCchHHHHHHHHHHHHHHHHh
Q 040440 213 --DPLRVEAY----HGLVMAYDGSDKKLNEVEKRIEKAMERCKK 250 (355)
Q Consensus 213 --~p~~~~~~----~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~ 250 (355)
+|++..+| +++|.++...|+ +++|+..|++|+++-..
T Consensus 92 e~~pd~~~A~~~~~~~rG~aL~~lgr-~eEAl~~y~kAlel~p~ 134 (159)
T 2hr2_A 92 ELNQDEGKLWISAVYSRALALDGLGR-GAEAMPEFKKVVEMIEE 134 (159)
T ss_dssp CTTSTHHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHH
T ss_pred cCCCchHHHHHHHHHhHHHHHHHCCC-HHHHHHHHHHHHhcCCC
Confidence 66666666 666777666666 55555555555555433
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.48 E-value=5.2e-12 Score=118.02 Aligned_cols=187 Identities=12% Similarity=-0.055 Sum_probs=153.1
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHH-HHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 040440 132 EEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAV-DVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEIL 210 (355)
Q Consensus 132 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~-~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 210 (355)
+.....|++++...|.+.+.|...+..+...|+.++|+ .+|++++...|.+...|+.++......|++++|.++|++++
T Consensus 326 ~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l 405 (679)
T 4e6h_A 326 ARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCI 405 (679)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 34567899999999999999999999999999999997 99999999999999999999999999999999999999999
Q ss_pred hhC-----------CC-----------CHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHH
Q 040440 211 RKD-----------PL-----------RVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIK 268 (355)
Q Consensus 211 ~~~-----------p~-----------~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~ 268 (355)
... |. ...+|..++.+..+.|+ .+.|...+++|++.. ......++...|.+.
T Consensus 406 ~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~-l~~AR~vf~~A~~~~-----~~~~~~lyi~~A~lE 479 (679)
T 4e6h_A 406 DRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQG-LAASRKIFGKCRRLK-----KLVTPDIYLENAYIE 479 (679)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHHHTG-----GGSCTHHHHHHHHHH
T ss_pred HHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhc-----CCCChHHHHHHHHHH
Confidence 752 43 23467777777777766 344444444443320 222355666677777
Q ss_pred HHcc-CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 040440 269 VMES-KHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPR 324 (355)
Q Consensus 269 ~~~g-~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~ 324 (355)
...+ +++.|..+|+.+++..|++...|...+......|+.+.|..+|++++...|+
T Consensus 480 ~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~ 536 (679)
T 4e6h_A 480 YHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISD 536 (679)
T ss_dssp HTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSS
T ss_pred HHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCC
Confidence 6665 4899999999999999999999999999999999999999999999998874
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.3e-12 Score=95.98 Aligned_cols=65 Identities=15% Similarity=0.144 Sum_probs=38.5
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHcCCCch---HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 040440 152 LQTLMEVRIKSQKLVEAVDVIDRLIELEPNEF---EWQLLKAQVQSYAGESEAAIKGFEEILRKDPLR 216 (355)
Q Consensus 152 ~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~ 216 (355)
++.+|.++...|++++|+..|+++++.+|++. .+++.+|.++...|++++|+..|+++++.+|++
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~ 72 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTH 72 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTS
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCC
Confidence 44555566666666666666666666555555 455566666666666666666666666555554
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.48 E-value=1e-13 Score=100.45 Aligned_cols=93 Identities=14% Similarity=0.032 Sum_probs=86.1
Q ss_pred CCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHH
Q 040440 129 VSYEEKEKEIEQHLAA---NPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKG 205 (355)
Q Consensus 129 ~~~~~A~~~~~~~l~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 205 (355)
+++++|+..|+++++. +|++..++..+|.+|...|++++|+.+|+++++.+|++..+++.+|.++...|++++|+..
T Consensus 4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 83 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVEL 83 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHH
Confidence 4788999999999999 6889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCHHHHH
Q 040440 206 FEEILRKDPLRVEAYH 221 (355)
Q Consensus 206 ~~~~~~~~p~~~~~~~ 221 (355)
|+++++..|+++....
T Consensus 84 ~~~al~~~p~~~~~~~ 99 (117)
T 3k9i_A 84 LLKIIAETSDDETIQS 99 (117)
T ss_dssp HHHHHHHHCCCHHHHH
T ss_pred HHHHHHhCCCcHHHHH
Confidence 9999999999987653
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.48 E-value=4.6e-13 Score=95.53 Aligned_cols=98 Identities=14% Similarity=0.142 Sum_probs=76.7
Q ss_pred CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--CHHHHHH
Q 040440 145 NPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPL--RVEAYHG 222 (355)
Q Consensus 145 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~~ 222 (355)
+|++..++..+|.++...|++++|+..|+++++.+|.+..++..+|.++...|++++|+..|+++++..|+ +..++..
T Consensus 2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 81 (112)
T 2kck_A 2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAA 81 (112)
T ss_dssp CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHH
Confidence 56677777778888888888888888888888888877777888888888888888888888888888887 7788888
Q ss_pred HHHHHhcc-CchHHHHHHHHHHHHHHHHh
Q 040440 223 LVMAYDGS-DKKLNEVEKRIEKAMERCKK 250 (355)
Q Consensus 223 l~~~~~~~-~~~~~~a~~~~~~Al~~~~~ 250 (355)
++.++... |+ +++|++.+++
T Consensus 82 l~~~~~~~~~~--------~~~A~~~~~~ 102 (112)
T 2kck_A 82 KADALRYIEGK--------EVEAEIAEAR 102 (112)
T ss_dssp HHHHHTTCSSC--------SHHHHHHHHH
T ss_pred HHHHHHHHhCC--------HHHHHHHHHH
Confidence 88888887 77 6666666655
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=99.47 E-value=8e-13 Score=115.54 Aligned_cols=124 Identities=19% Similarity=0.124 Sum_probs=93.6
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHH----------------cCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 040440 149 IEALQTLMEVRIKSQKLVEAVDVIDRLIE----------------LEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRK 212 (355)
Q Consensus 149 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~----------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 212 (355)
...+..+|..+...|++++|+..|+++++ .+|....++.++|.++..+|++++|+.++++++++
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 302 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI 302 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence 45688999999999999999999999998 45555566777777777777777777777777776
Q ss_pred CCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCh
Q 040440 213 DPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDF 292 (355)
Q Consensus 213 ~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~ 292 (355)
+|++..+++.+ |.+|...|++++|+..|+++++++|++.
T Consensus 303 ~p~~~~a~~~l-----------------------------------------g~~~~~~g~~~eA~~~l~~Al~l~P~~~ 341 (370)
T 1ihg_A 303 DPSNTKALYRR-----------------------------------------AQGWQGLKEYDQALADLKKAQEIAPEDK 341 (370)
T ss_dssp CTTCHHHHHHH-----------------------------------------HHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred CchhHHHHHHH-----------------------------------------HHHHHHccCHHHHHHHHHHHHHhCCCCH
Confidence 66665555444 4455556777788888888888888888
Q ss_pred HHHHHHHHHHHHcCCHHHHHH
Q 040440 293 RPYLCQGIIYTLLRKKDEAEK 313 (355)
Q Consensus 293 ~~~~~l~~~~~~~g~~~~A~~ 313 (355)
.++..++.++...++++++..
T Consensus 342 ~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 342 AIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 888888888887777776654
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.47 E-value=6.8e-14 Score=121.04 Aligned_cols=156 Identities=10% Similarity=0.024 Sum_probs=69.9
Q ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 040440 147 NDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMA 226 (355)
Q Consensus 147 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 226 (355)
.....+..+|..++..|++++|+..|++++...|++.. +...|+++++...+. ..+++++|.+
T Consensus 177 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~--------~~~~~~~~~~~~~l~---------~~~~~nla~~ 239 (338)
T 2if4_A 177 GAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFM--------FQLYGKYQDMALAVK---------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHH--------HTCCHHHHHHHHHHH---------THHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchh--------hhhcccHHHHHHHHH---------HHHHHHHHHH
Confidence 34667889999999999999999999999999887652 112222222222211 1234444555
Q ss_pred HhccCchHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHH-HHH
Q 040440 227 YDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGII-YTL 304 (355)
Q Consensus 227 ~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~-~~~ 304 (355)
+...|+ +++|+..+++ +...+.+..+++.+|.+|..+|++++|+..|+++++++|++..++..++.+ ...
T Consensus 240 ~~~~g~--------~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~ 311 (338)
T 2if4_A 240 LIKLKR--------YDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQE 311 (338)
T ss_dssp HHTTTC--------CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------
T ss_pred HHHcCC--------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Confidence 544444 3333333322 222344455555556666667778888888888888888888888888877 445
Q ss_pred cCCHHHHHHHHHHHHHhCCCChh
Q 040440 305 LRKKDEAEKQFEKFRRLVPRNHP 327 (355)
Q Consensus 305 ~g~~~~A~~~~~~~l~~~p~~~~ 327 (355)
.++.+++...|++++...|++..
T Consensus 312 ~~~~~~a~~~~~~~l~~~p~~~~ 334 (338)
T 2if4_A 312 KALYQKQKEMYKGIFKGKDEGGA 334 (338)
T ss_dssp -----------------------
T ss_pred HHHHHHHHHHHHHhhCCCCCCCC
Confidence 56677788888888888877643
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.47 E-value=4.1e-12 Score=95.55 Aligned_cols=112 Identities=12% Similarity=0.054 Sum_probs=100.4
Q ss_pred hCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hccCCch---HHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 040440 212 KDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDL---RDFKLLIAQIKVMESKHSEALRVYEELVKE 287 (355)
Q Consensus 212 ~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 287 (355)
..+.+...++.+|..+...|+ +++|+..+++ ....+.. ..++..+|.+|...|++++|+..++++++.
T Consensus 23 ~~~~~~~~~~~~a~~~~~~~~--------~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 94 (148)
T 2dba_A 23 PGASSVEQLRKEGNELFKCGD--------YGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK 94 (148)
T ss_dssp TTCCCHHHHHHHHHHHHTTTC--------HHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHhCC--------HHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh
Confidence 356788999999999999999 8888888887 4556665 788999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHH
Q 040440 288 EPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHPYREY 331 (355)
Q Consensus 288 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~ 331 (355)
+|++..+++.+|.++...|++++|+.+|+++++++|++......
T Consensus 95 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 138 (148)
T 2dba_A 95 DGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEA 138 (148)
T ss_dssp TSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHH
T ss_pred CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHH
Confidence 99999999999999999999999999999999999998655433
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=99.47 E-value=6.8e-13 Score=120.07 Aligned_cols=116 Identities=17% Similarity=0.160 Sum_probs=104.6
Q ss_pred hccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHH
Q 040440 126 REDVSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKG 205 (355)
Q Consensus 126 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 205 (355)
+..+++++|++.|+++++.+|++..++..+|.+|...|++++|+..++++++.+|++..++..+|.+|..+|++++|++.
T Consensus 17 ~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~ 96 (477)
T 1wao_1 17 FKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRD 96 (477)
T ss_dssp TTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 33459999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCHHHHHHHHHH--HhccCchHHHHHHHHHHHHHHHH
Q 040440 206 FEEILRKDPLRVEAYHGLVMA--YDGSDKKLNEVEKRIEKAMERCK 249 (355)
Q Consensus 206 ~~~~~~~~p~~~~~~~~l~~~--~~~~~~~~~~a~~~~~~Al~~~~ 249 (355)
|+++++.+|++..++..++.+ +...|+ +++|++.++
T Consensus 97 ~~~al~~~p~~~~~~~~l~~~~~~~~~g~--------~~~A~~~~~ 134 (477)
T 1wao_1 97 YETVVKVKPHDKDAKMKYQECNKIVKQKA--------FERAIAGDE 134 (477)
T ss_dssp HHHHHHHSTTCTTHHHHHHHHHHHHHHHH--------HCCC-----
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHHH--------HHHHhcccc
Confidence 999999999999999988888 777777 888888877
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=99.46 E-value=3.7e-12 Score=93.59 Aligned_cols=106 Identities=16% Similarity=0.069 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHH
Q 040440 185 WQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLI 264 (355)
Q Consensus 185 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~l 264 (355)
.++.+|.++...|++++|+..|+++++.+|++.. ...+++.+
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~--------------------------------------~~~~~~~l 45 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNGVY--------------------------------------TPNALYWL 45 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTT--------------------------------------HHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcc--------------------------------------cHHHHHHH
Confidence 4567788888888888888888888888776541 11334455
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhH
Q 040440 265 AQIKVMESKHSEALRVYEELVKEEPRD---FRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHPY 328 (355)
Q Consensus 265 a~~~~~~g~~~~A~~~~~~~l~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 328 (355)
|.++...|++++|+..|++++..+|++ ..+++.+|.++...|++++|+..|+++++..|++...
T Consensus 46 g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 112 (129)
T 2xev_A 46 GESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDAA 112 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTSHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHH
Confidence 666667777888888888888888877 6778888888888888888888888888888876444
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.45 E-value=6.5e-13 Score=94.74 Aligned_cols=105 Identities=10% Similarity=0.037 Sum_probs=95.5
Q ss_pred CCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-
Q 040440 213 DPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPR- 290 (355)
Q Consensus 213 ~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~- 290 (355)
+|++...+..+|.++...|+ +++|+..+++ ....+....++..+|.++...|++++|+.+|+++++.+|.
T Consensus 2 ~p~~~~~~~~~~~~~~~~~~--------~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~ 73 (112)
T 2kck_A 2 VDQNPEEYYLEGVLQYDAGN--------YTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDE 73 (112)
T ss_dssp CCSSTTGGGGHHHHHHSSCC--------HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCT
T ss_pred CCCcHHHHHHHHHHHHHhhh--------HHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccc
Confidence 57888889999999999999 6666666666 4456788899999999999999999999999999999999
Q ss_pred -ChHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCC
Q 040440 291 -DFRPYLCQGIIYTLL-RKKDEAEKQFEKFRRLVPRN 325 (355)
Q Consensus 291 -~~~~~~~l~~~~~~~-g~~~~A~~~~~~~l~~~p~~ 325 (355)
+..++..+|.++... |++++|++++++++...|.+
T Consensus 74 ~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 74 YNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp TCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred chHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccCC
Confidence 999999999999999 99999999999999999875
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.45 E-value=5e-12 Score=113.11 Aligned_cols=173 Identities=14% Similarity=0.087 Sum_probs=143.8
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCch-----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 040440 150 EALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEF-----------------EWQLLKAQVQSYAGESEAAIKGFEEILRK 212 (355)
Q Consensus 150 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~-----------------~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 212 (355)
.+....|..+...|+|++|++.|.++++..+... .++..+|.+|...|++++|++++++++..
T Consensus 5 ~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~ 84 (434)
T 4b4t_Q 5 GSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEY 84 (434)
T ss_dssp THHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 3455677888999999999999999999877543 25788999999999999999999999987
Q ss_pred CCCCH------HHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 040440 213 DPLRV------EAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVK 286 (355)
Q Consensus 213 ~p~~~------~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 286 (355)
.+... .+...++.++...|+ ++.+...+.+++..............++..+|.+|...|+|++|+.++++++.
T Consensus 85 ~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 163 (434)
T 4b4t_Q 85 MMQFAKSKTVKVLKTLIEKFEQVPDS-LDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLR 163 (434)
T ss_dssp HHTSCHHHHHHHHHHHHHHHCSCCSC-HHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHccchHHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHH
Confidence 54432 234556777767776 88888888888888888777777888999999999999999999999999986
Q ss_pred hC------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 040440 287 EE------PRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVP 323 (355)
Q Consensus 287 ~~------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p 323 (355)
.. +....++..+|.+|...|++++|..++++++...+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~ 206 (434)
T 4b4t_Q 164 EFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAAN 206 (434)
T ss_dssp HHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhh
Confidence 52 22357899999999999999999999999988643
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.44 E-value=6.1e-14 Score=121.33 Aligned_cols=130 Identities=15% Similarity=0.146 Sum_probs=98.4
Q ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHH
Q 040440 182 EFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFK 261 (355)
Q Consensus 182 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~ 261 (355)
....+..+|..+...|++++|+..|++++...|++.. +...++ ++++...+. ..++
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~--------~~~~~~--------~~~~~~~l~--------~~~~ 233 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFM--------FQLYGK--------YQDMALAVK--------NPCH 233 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHH--------HTCCHH--------HHHHHHHHH--------THHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchh--------hhhccc--------HHHHHHHHH--------HHHH
Confidence 3456889999999999999999999999999987542 233333 444443321 2478
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHH
Q 040440 262 LLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHPYREYFVDN 335 (355)
Q Consensus 262 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~ 335 (355)
.++|.+|..+|++++|+..|+++++.+|++..+|+++|.+|..+|++++|+.+|+++++++|++......+..+
T Consensus 234 ~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l 307 (338)
T 2if4_A 234 LNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRAL 307 (338)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999886665544433
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=99.44 E-value=1.5e-12 Score=95.61 Aligned_cols=124 Identities=16% Similarity=0.126 Sum_probs=88.1
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 040440 148 DIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAY 227 (355)
Q Consensus 148 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 227 (355)
....+..+|.++...|++++|+.+|+++++.+|.+..++..+|.++...|++++|+.++++++...|++...+
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~------- 75 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDY------- 75 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCH-------
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhH-------
Confidence 3456677777777777777777777777777777777777777777777777777777777766544321110
Q ss_pred hccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcC
Q 040440 228 DGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLR 306 (355)
Q Consensus 228 ~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g 306 (355)
.....++..+|.+|...|++++|+.+|+++++..| +...+..++.+....+
T Consensus 76 ---------------------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~ 126 (131)
T 1elr_A 76 ---------------------------RQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILK 126 (131)
T ss_dssp ---------------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHH
T ss_pred ---------------------------HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHH
Confidence 01144567788899999999999999999999888 6777878877766544
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.43 E-value=5.8e-13 Score=109.94 Aligned_cols=160 Identities=10% Similarity=0.010 Sum_probs=135.9
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHH-------HHHHHHcCCHHHHHHHHHHHHhhCCCC--------
Q 040440 152 LQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLK-------AQVQSYAGESEAAIKGFEEILRKDPLR-------- 216 (355)
Q Consensus 152 ~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l-------a~~~~~~g~~~~A~~~~~~~~~~~p~~-------- 216 (355)
++..|..+ ..++++.|.+.|.++++.+|+..++|..+ +.++...++..+++..+++.+.+.|..
T Consensus 10 ~~~~~~~~-~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~ 88 (282)
T 4f3v_A 10 LFESAVSM-LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIG 88 (282)
T ss_dssp HHHHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECC
T ss_pred HHHHHhcc-cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccC
Confidence 33444444 58999999999999999999999999999 899999999999999999999976643
Q ss_pred -------------HHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHHHccCHHHHHHHHH
Q 040440 217 -------------VEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQIKVMESKHSEALRVYE 282 (355)
Q Consensus 217 -------------~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 282 (355)
.++...++.++...|+ |++|.+.+.. ....|.+. ..+.+|.++.+.|+|++|+..|+
T Consensus 89 g~y~~~~~~v~~r~dl~LayA~~L~~~g~--------y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~ 159 (282)
T 4f3v_A 89 GLYGDITYPVTSPLAITMGFAACEAAQGN--------YADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVK 159 (282)
T ss_dssp TTTCCCEEECSSHHHHHHHHHHHHHHHTC--------HHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHT
T ss_pred CcccccccccCCHhHHHHHHHHHHHHCCC--------HHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHH
Confidence 3445568889999999 9999999988 45567777 99999999999999999999999
Q ss_pred HHHHhCCCC--hHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 040440 283 ELVKEEPRD--FRPYLCQGIIYTLLRKKDEAEKQFEKFRRL 321 (355)
Q Consensus 283 ~~l~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 321 (355)
++....+.. ..+++.+|.++..+|++++|+.+|++++..
T Consensus 160 ~a~~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g 200 (282)
T 4f3v_A 160 SAGKWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDS 200 (282)
T ss_dssp TGGGCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred HhhccCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcC
Confidence 876643211 358999999999999999999999999854
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=99.43 E-value=1.1e-12 Score=96.35 Aligned_cols=110 Identities=13% Similarity=0.132 Sum_probs=82.3
Q ss_pred hccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHH
Q 040440 126 REDVSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKG 205 (355)
Q Consensus 126 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 205 (355)
+..+++++|+..++++++.+|.+..++..+|.++...|++++|+.++++++...|.+...+.
T Consensus 15 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~------------------ 76 (131)
T 1elr_A 15 YKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYR------------------ 76 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHH------------------
T ss_pred HHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHH------------------
Confidence 34459999999999999999999999999999999999999999999999987654321110
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHHHc
Q 040440 206 FEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQIKVME 271 (355)
Q Consensus 206 ~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~~~ 271 (355)
....+++.+|.++...|+ +++|++.+++ ....+ +......++.+....
T Consensus 77 ---------~~~~~~~~la~~~~~~~~--------~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~ 125 (131)
T 1elr_A 77 ---------QIAKAYARIGNSYFKEEK--------YKDAIHFYNKSLAEHR-TPDVLKKCQQAEKIL 125 (131)
T ss_dssp ---------HHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHH
T ss_pred ---------HHHHHHHHHHHHHHHhcc--------HHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHH
Confidence 113456788888988888 6666666655 22234 466666666665543
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.41 E-value=2e-11 Score=114.07 Aligned_cols=216 Identities=11% Similarity=-0.018 Sum_probs=172.9
Q ss_pred cccccccccchhhhhhhhhhhccCCHHHHH-HHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-----
Q 040440 106 VAAAATVESTNESTKDTTSAREDVSYEEKE-KEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELE----- 179 (355)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~-~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~----- 179 (355)
+...|.....+...+.... ..++.++|. .+|++++...|.+...|...+......|++++|..+|++++...
T Consensus 336 L~~~p~~~~lW~~ya~~~~--~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~ 413 (679)
T 4e6h_A 336 AQHVCFAPEIWFNMANYQG--EKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLA 413 (679)
T ss_dssp HHHTTTCHHHHHHHHHHHH--HHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHH--hcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhh
Confidence 3344555555555544311 123667886 99999999999999999999999999999999999999998752
Q ss_pred ------CC-----------chHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCCHHHHHHHHHHHhccCchHHHHHHHH
Q 040440 180 ------PN-----------EFEWQLLKAQVQSYAGESEAAIKGFEEILRK-DPLRVEAYHGLVMAYDGSDKKLNEVEKRI 241 (355)
Q Consensus 180 ------~~-----------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~~l~~~~~~~~~~~~~a~~~~ 241 (355)
|. ...+|...+....+.|+.+.|+.+|.++++. .+.....|...+.+....+++.+.|...|
T Consensus 414 ~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~if 493 (679)
T 4e6h_A 414 ALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVL 493 (679)
T ss_dssp HHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHH
T ss_pred hhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 42 3347888888888999999999999999987 44456677777777666655466666667
Q ss_pred HHHHHHHHhhccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---ChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 040440 242 EKAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPR---DFRPYLCQGIIYTLLRKKDEAEKQFEKF 318 (355)
Q Consensus 242 ~~Al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 318 (355)
+.+++. .+.+..++...+.+....|+.+.|..+|++++...|+ ...+|..........|+.+.+..+.+++
T Consensus 494 e~~Lk~------~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~ 567 (679)
T 4e6h_A 494 ELGLKY------FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRF 567 (679)
T ss_dssp HHHHHH------HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHH
T ss_pred HHHHHH------CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 776665 4667888888999999999999999999999998873 5678888999999999999999999999
Q ss_pred HHhCCCChhHH
Q 040440 319 RRLVPRNHPYR 329 (355)
Q Consensus 319 l~~~p~~~~~~ 329 (355)
.+..|++....
T Consensus 568 ~~~~P~~~~~~ 578 (679)
T 4e6h_A 568 FEKFPEVNKLE 578 (679)
T ss_dssp HHHSTTCCHHH
T ss_pred HHhCCCCcHHH
Confidence 99999886553
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=99.39 E-value=3.3e-12 Score=111.66 Aligned_cols=107 Identities=15% Similarity=0.129 Sum_probs=101.1
Q ss_pred hccCCHHHHHHHHHHHHH----------------cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHH
Q 040440 126 REDVSYEEKEKEIEQHLA----------------ANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLK 189 (355)
Q Consensus 126 ~~~~~~~~A~~~~~~~l~----------------~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 189 (355)
+..+++++|+..|+++++ .+|.+..++.++|.+|...|++++|+.+++++++.+|++..+++.+
T Consensus 234 ~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~l 313 (370)
T 1ihg_A 234 FKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRR 313 (370)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHH
Confidence 445599999999999998 7788899999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCc
Q 040440 190 AQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDK 232 (355)
Q Consensus 190 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 232 (355)
|.+|...|++++|+..|+++++++|++..++..++.++...++
T Consensus 314 g~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~ 356 (370)
T 1ihg_A 314 AQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKA 356 (370)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999887776
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.36 E-value=2.3e-12 Score=93.16 Aligned_cols=93 Identities=14% Similarity=0.066 Sum_probs=82.1
Q ss_pred HHHHHHHHHh-hcc---CCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHH
Q 040440 241 IEKAMERCKK-EKK---KSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFE 316 (355)
Q Consensus 241 ~~~Al~~~~~-~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 316 (355)
+++|+..+++ +.. .|....++..+|.+|...|++++|+.+|+++++.+|++..+++.+|.++...|++++|+..|+
T Consensus 6 ~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 85 (117)
T 3k9i_A 6 EAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLL 85 (117)
T ss_dssp -CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 7777777777 333 478889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCChhHHHHHH
Q 040440 317 KFRRLVPRNHPYREYFV 333 (355)
Q Consensus 317 ~~l~~~p~~~~~~~~~~ 333 (355)
+++...|+++....+..
T Consensus 86 ~al~~~p~~~~~~~~~~ 102 (117)
T 3k9i_A 86 KIIAETSDDETIQSYKQ 102 (117)
T ss_dssp HHHHHHCCCHHHHHTHH
T ss_pred HHHHhCCCcHHHHHHHH
Confidence 99999999876654433
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.36 E-value=1.1e-11 Score=89.24 Aligned_cols=83 Identities=13% Similarity=0.111 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 040440 133 EKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRK 212 (355)
Q Consensus 133 ~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 212 (355)
+|+..|+++++.+|++..++..+|.+|...|++++|+..|+++++.+|++..+++.+|.++...|++++|+..|+++++.
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCC
Q 040440 213 DPL 215 (355)
Q Consensus 213 ~p~ 215 (355)
.|.
T Consensus 83 ~~~ 85 (115)
T 2kat_A 83 AQS 85 (115)
T ss_dssp HHH
T ss_pred ccc
Confidence 764
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.35 E-value=1.5e-13 Score=120.02 Aligned_cols=158 Identities=11% Similarity=-0.034 Sum_probs=42.2
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 040440 130 SYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEI 209 (355)
Q Consensus 130 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 209 (355)
++++|.+.+++. +++.+|..+|.++.+.|++++|++.|.++ .+...+..++..+...|++++|+.+++.+
T Consensus 18 ~ld~A~~fae~~-----~~~~vWs~La~A~l~~g~~~eAIdsfika-----~D~~~y~~V~~~ae~~g~~EeAi~yl~~a 87 (449)
T 1b89_A 18 NLDRAYEFAERC-----NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMA 87 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CHHHHHHHHHhC-----CChHHHHHHHHHHHHcCCHHHHHHHHHcC-----CCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 344455555444 22235555555555555555555555432 23334444444455555555555544444
Q ss_pred HhhCCC---------------------------CHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHH
Q 040440 210 LRKDPL---------------------------RVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKL 262 (355)
Q Consensus 210 ~~~~p~---------------------------~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~ 262 (355)
.+..++ +...|..+|..+...|. |++|+.++... ..+.
T Consensus 88 rk~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~pn~~a~~~IGd~~~~~g~--------yeeA~~~Y~~a-------~n~~ 152 (449)
T 1b89_A 88 RKKARESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKM--------YDAAKLLYNNV-------SNFG 152 (449)
T ss_dssp ---------------------CHHHHTTTTTCC----------------C--------TTTHHHHHHHT-------TCHH
T ss_pred HHhCccchhHHHHHHHHHHhCCHHHHHHHHcCCcHHHHHHHHHHHHHcCC--------HHHHHHHHHHh-------hhHH
Confidence 442111 22355555555555555 55555555543 2455
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHH
Q 040440 263 LIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEK 317 (355)
Q Consensus 263 ~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 317 (355)
.+|.++.++|++++|++.++++ .++.+|...+.++...|+++.|..+...
T Consensus 153 ~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv~~~ef~lA~~~~l~ 202 (449)
T 1b89_A 153 RLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLH 202 (449)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHHHHHHTTTT
T ss_pred HHHHHHHHhccHHHHHHHHHHc-----CCchhHHHHHHHHHHcCcHHHHHHHHHH
Confidence 6677777777777777777766 3566677777777777777777555543
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.33 E-value=2.6e-10 Score=111.32 Aligned_cols=189 Identities=10% Similarity=0.011 Sum_probs=145.2
Q ss_pred ccccchhhhhhhhhhhccC-CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC--------
Q 040440 111 TVESTNESTKDTTSAREDV-SYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPN-------- 181 (355)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-------- 181 (355)
....++..++.. +... ++++|+..|.++ ++...|..+|.++.+.|+|++|+++|..+.+..++
T Consensus 1103 n~p~vWsqLAKA---ql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~La 1174 (1630)
T 1xi4_A 1103 NEPAVWSQLAKA---QLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELI 1174 (1630)
T ss_pred CCHHHHHHHHHH---HHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHH
Confidence 334445555554 6666 999999999876 88999999999999999999999999887655422
Q ss_pred -------------------chHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHH
Q 040440 182 -------------------EFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIE 242 (355)
Q Consensus 182 -------------------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~ 242 (355)
+...+..+|..+...|+|++|+.+|.++ ..|..++.++.+.|+ ++
T Consensus 1175 faYAKl~rleele~fI~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA--------~ny~rLA~tLvkLge--------~q 1238 (1630)
T 1xi4_A 1175 FALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGE--------YQ 1238 (1630)
T ss_pred HHHHhhcCHHHHHHHHhCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh--------hHHHHHHHHHHHhCC--------HH
Confidence 1223667899999999999999999986 478889999999998 55
Q ss_pred HHHHHHHhhccC--------------------------CchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHH
Q 040440 243 KAMERCKKEKKK--------------------------SDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYL 296 (355)
Q Consensus 243 ~Al~~~~~~~~~--------------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~ 296 (355)
+|++.+++.... ..+++.+..++..|...|.+++|+.++++++.+++.+...+.
T Consensus 1239 ~AIEaarKA~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmft 1318 (1630)
T 1xi4_A 1239 AAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFT 1318 (1630)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHH
Confidence 555544442111 123445567788999999999999999999999998989998
Q ss_pred HHHHHHHHc--CCHHHHHHHHHHHHHhCC
Q 040440 297 CQGIIYTLL--RKKDEAEKQFEKFRRLVP 323 (355)
Q Consensus 297 ~l~~~~~~~--g~~~~A~~~~~~~l~~~p 323 (355)
.+|.+|.+- ++..++.++|...+.+.+
T Consensus 1319 ELaiLyaKy~peklmEhlk~f~~rini~k 1347 (1630)
T 1xi4_A 1319 ELAILYSKFKPQKMREHLELFWSRVNIPK 1347 (1630)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhcccch
Confidence 888888754 566777777777666544
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=99.32 E-value=2.1e-11 Score=83.42 Aligned_cols=85 Identities=26% Similarity=0.264 Sum_probs=79.8
Q ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 040440 147 NDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMA 226 (355)
Q Consensus 147 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 226 (355)
.+..++..+|.++...|++++|+.+|+++++.+|++..++..+|.++...|++++|+..|+++++.+|++..++..++.+
T Consensus 7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 86 (91)
T 1na3_A 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 45778999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HhccC
Q 040440 227 YDGSD 231 (355)
Q Consensus 227 ~~~~~ 231 (355)
+...|
T Consensus 87 ~~~~g 91 (91)
T 1na3_A 87 KQKQG 91 (91)
T ss_dssp HHHHC
T ss_pred HHhcC
Confidence 86543
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.31 E-value=1.1e-11 Score=108.27 Aligned_cols=165 Identities=13% Similarity=-0.014 Sum_probs=83.4
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 040440 130 SYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEI 209 (355)
Q Consensus 130 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 209 (355)
++++|+.+++.+++..+ ++.+...++.+|.+.|+++++.++++. | +..+|..+|..+...|+|++|+.+|.++
T Consensus 76 ~~EeAi~yl~~ark~~~-~~~i~~~Li~~Y~Klg~l~e~e~f~~~-----p-n~~a~~~IGd~~~~~g~yeeA~~~Y~~a 148 (449)
T 1b89_A 76 NWEELVKYLQMARKKAR-ESYVETELIFALAKTNRLAELEEFING-----P-NNAHIQQVGDRCYDEKMYDAAKLLYNNV 148 (449)
T ss_dssp ----------------------------------CHHHHTTTTTC-----C-----------------CTTTHHHHHHHT
T ss_pred CHHHHHHHHHHHHHhCc-cchhHHHHHHHHHHhCCHHHHHHHHcC-----C-cHHHHHHHHHHHHHcCCHHHHHHHHHHh
Confidence 77788887777776433 356667777777788888777776642 3 3347788888888888888888888866
Q ss_pred HhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Q 040440 210 LRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEP 289 (355)
Q Consensus 210 ~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~ 289 (355)
..|..++.++.+.|+ |++|++.+++. .+...|..++.++...|+++.|..+...++ .
T Consensus 149 --------~n~~~LA~~L~~Lg~--------yq~AVea~~KA----~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~-- 205 (449)
T 1b89_A 149 --------SNFGRLASTLVHLGE--------YQAAVDGARKA----NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-V-- 205 (449)
T ss_dssp --------TCHHHHHHHHHTTTC--------HHHHHHHHHHH----TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-T--
T ss_pred --------hhHHHHHHHHHHhcc--------HHHHHHHHHHc----CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-h--
Confidence 357777888888888 77777777665 246777777788888888888876666522 3
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 040440 290 RDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRN 325 (355)
Q Consensus 290 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~ 325 (355)
+++-...++..|.+.|++++|+.++++++.+++..
T Consensus 206 -~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah 240 (449)
T 1b89_A 206 -HADELEELINYYQDRGYFEELITMLEAALGLERAH 240 (449)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCC
T ss_pred -CHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHH
Confidence 33334467777888888888888888888877655
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.31 E-value=9.4e-11 Score=98.05 Aligned_cols=155 Identities=12% Similarity=0.038 Sum_probs=125.3
Q ss_pred cCCHHHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC----chHHHHHH--HHHHHHcC--
Q 040440 128 DVSYEEKEKEIEQHLAANP--NDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPN----EFEWQLLK--AQVQSYAG-- 197 (355)
Q Consensus 128 ~~~~~~A~~~~~~~l~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~~l--a~~~~~~g-- 197 (355)
.+++++|++.+.+.+..+| ++.+++..++.++..+|+.+.|.+.++++.+.+|+ +......+ +++....|
T Consensus 113 ~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~ 192 (310)
T 3mv2_B 113 LGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKE 192 (310)
T ss_dssp HTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred cCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHhCCc
Confidence 3599999999999999887 88999999999999999999999999999998883 23333444 44566666
Q ss_pred CHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhcc-----------CCchHHHHHHH
Q 040440 198 ESEAAIKGFEEILRKDPL--RVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKK-----------KSDLRDFKLLI 264 (355)
Q Consensus 198 ~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~-----------~~~~~~~~~~l 264 (355)
++.+|..+|+++.+..|+ ....+++ ++..+|+ +++|.+.++.... .+.++.++.++
T Consensus 193 ~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~g~--------~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~ 261 (310)
T 3mv2_B 193 TATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQRN--------IAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQ 261 (310)
T ss_dssp TTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHHTC--------HHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHcCC--------HHHHHHHHHHHHHhcccccccccCCCCCHHHHHHH
Confidence 999999999999988886 2333333 8889999 6666666654211 48899999899
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCChHHH
Q 040440 265 AQIKVMESKHSEALRVYEELVKEEPRDFRPY 295 (355)
Q Consensus 265 a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~ 295 (355)
+.+....|+ +|.++++++.+.+|+++.+.
T Consensus 262 i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~ 290 (310)
T 3mv2_B 262 ITLALMQGL--DTEDLTNQLVKLDHEHAFIK 290 (310)
T ss_dssp HHHHHHTTC--TTHHHHHHHHHTTCCCHHHH
T ss_pred HHHHHHhCh--HHHHHHHHHHHhCCCChHHH
Confidence 888888998 99999999999999988654
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.25 E-value=5.3e-11 Score=84.72 Aligned_cols=85 Identities=22% Similarity=0.105 Sum_probs=79.0
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHH
Q 040440 148 DIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLR------VEAYH 221 (355)
Q Consensus 148 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~~ 221 (355)
+..++..+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+..|+++++.+|++ ..+++
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 467889999999999999999999999999999999999999999999999999999999999999998 78888
Q ss_pred HHHHHHhccCc
Q 040440 222 GLVMAYDGSDK 232 (355)
Q Consensus 222 ~l~~~~~~~~~ 232 (355)
.++.++...|+
T Consensus 83 ~~~~~~~~~~~ 93 (111)
T 2l6j_A 83 RLELAQGAVGS 93 (111)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHHh
Confidence 88888877766
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=99.24 E-value=6.8e-11 Score=82.69 Aligned_cols=72 Identities=14% Similarity=0.206 Sum_probs=66.6
Q ss_pred cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 040440 144 ANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPL 215 (355)
Q Consensus 144 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~ 215 (355)
.+|+++.+++.+|.+|...|++++|+..|+++++.+|++..+|+.+|.+|...|++++|+..|++++++.|.
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~ 73 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVARE 73 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhc
Confidence 479999999999999999999999999999999999999999999999999999999999999999998653
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.23 E-value=1.3e-10 Score=104.64 Aligned_cols=132 Identities=11% Similarity=0.028 Sum_probs=112.3
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHc-----CCCch---HHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCCH---H
Q 040440 155 LMEVRIKSQKLVEAVDVIDRLIEL-----EPNEF---EWQLLKAQVQSYAGESEAAIKGFEEILRK-----DPLRV---E 218 (355)
Q Consensus 155 la~~~~~~g~~~~A~~~~~~~~~~-----~~~~~---~~~~~la~~~~~~g~~~~A~~~~~~~~~~-----~p~~~---~ 218 (355)
.+..+..+|+|++|+..++++++. .++++ ..+.++|.+|..+|+|++|+.++++++++ .++++ .
T Consensus 315 ~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~ 394 (490)
T 3n71_A 315 KIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGM 394 (490)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHH
Confidence 444567899999999999999876 44444 46889999999999999999999999986 45555 4
Q ss_pred HHHHHHHHHhccCchHHHHHHHHHHHHHHHHh--hccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 040440 219 AYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK--EKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKE 287 (355)
Q Consensus 219 ~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~--~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 287 (355)
.+.++|.+|..+|+ +++|...+++|+++++. ...+|....+...++.++..++.+++|...|.++.+.
T Consensus 395 ~l~nLa~~~~~~G~-~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 395 AVMRAGLTNWHAGH-IEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58899999999999 99999999999999988 4667788888889999999999999999999888653
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=99.21 E-value=3.3e-09 Score=90.34 Aligned_cols=152 Identities=13% Similarity=0.111 Sum_probs=110.8
Q ss_pred HHcCCCchHH--HHHHHHHHHHcCC---HHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCc---hHHHHHHHHHHHHHH
Q 040440 176 IELEPNEFEW--QLLKAQVQSYAGE---SEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDK---KLNEVEKRIEKAMER 247 (355)
Q Consensus 176 ~~~~~~~~~~--~~~la~~~~~~g~---~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~---~~~~a~~~~~~Al~~ 247 (355)
....|.+..+ ++..|..+...++ +.+|+.+|+++++++|++..++-.++.+|..... ...........+++.
T Consensus 187 ~~~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a 266 (372)
T 3ly7_A 187 QKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDN 266 (372)
T ss_dssp HHHSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred hccCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHH
Confidence 3444555443 3445555555443 4678888888888888888888777777652111 011112223444443
Q ss_pred HHhhccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChh
Q 040440 248 CKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHP 327 (355)
Q Consensus 248 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 327 (355)
.......+....++..++..+...|++++|+..+++++.++| +...|..+|.++...|++++|.+.|++++.++|....
T Consensus 267 ~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t 345 (372)
T 3ly7_A 267 IVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANT 345 (372)
T ss_dssp HHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHH
T ss_pred HHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcCh
Confidence 334566788899999999999999999999999999999997 5778889999999999999999999999999997644
Q ss_pred H
Q 040440 328 Y 328 (355)
Q Consensus 328 ~ 328 (355)
+
T Consensus 346 ~ 346 (372)
T 3ly7_A 346 L 346 (372)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.17 E-value=2.3e-10 Score=103.03 Aligned_cols=134 Identities=11% Similarity=-0.014 Sum_probs=114.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh-----CCCCH---HHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh--hccCCch
Q 040440 188 LKAQVQSYAGESEAAIKGFEEILRK-----DPLRV---EAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK--EKKKSDL 257 (355)
Q Consensus 188 ~la~~~~~~g~~~~A~~~~~~~~~~-----~p~~~---~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~--~~~~~~~ 257 (355)
..+..+..+|+|++|+..+++++++ .++++ ..+.+++.+|..+|+ +++|...++++++++++ ...+|+.
T Consensus 314 e~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~-~~eA~~~~~~aL~i~~~~lG~~Hp~~ 392 (490)
T 3n71_A 314 EKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQA-YEEASHYARRMVDGYMKLYHHNNAQL 392 (490)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHSCTTCHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHcCCCCHHH
Confidence 3445577899999999999999986 35555 458899999999998 99999999999999988 5677888
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CCCCh---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 040440 258 RDFKLLIAQIKVMESKHSEALRVYEELVKE-----EPRDF---RPYLCQGIIYTLLRKKDEAEKQFEKFRRLV 322 (355)
Q Consensus 258 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-----~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 322 (355)
...+.++|.+|..+|++++|+..|++++++ .|+++ .....++.++..+|.+++|...|+++.+..
T Consensus 393 a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 393 GMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888999999999999999999999999864 45554 456789999999999999999999987654
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=99.17 E-value=1.9e-10 Score=80.35 Aligned_cols=72 Identities=22% Similarity=0.332 Sum_probs=67.1
Q ss_pred CCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 040440 254 KSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRN 325 (355)
Q Consensus 254 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~ 325 (355)
+|.+..+++.+|.+|...|++++|+..|+++++.+|++..+|+.+|.+|...|++++|+..|++++++.|++
T Consensus 3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~ 74 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREE 74 (100)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcC
Confidence 578889999999999999999999999999999999999999999999999999999999999999987654
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.16 E-value=4.7e-10 Score=80.48 Aligned_cols=82 Identities=11% Similarity=0.057 Sum_probs=74.2
Q ss_pred HHHHHHh-hccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 040440 244 AMERCKK-EKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLV 322 (355)
Q Consensus 244 Al~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 322 (355)
+++.+++ ....|.+..++..+|.+|...|++++|+..|+++++.+|++..+|+.+|.++...|++++|+..|++++++.
T Consensus 4 a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 83 (115)
T 2kat_A 4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAA 83 (115)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 4445555 455788899999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCC
Q 040440 323 PRN 325 (355)
Q Consensus 323 p~~ 325 (355)
|++
T Consensus 84 ~~~ 86 (115)
T 2kat_A 84 QSR 86 (115)
T ss_dssp HHH
T ss_pred ccc
Confidence 754
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=99.12 E-value=1.6e-09 Score=73.82 Aligned_cols=76 Identities=17% Similarity=0.233 Sum_probs=69.9
Q ss_pred CchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHH
Q 040440 255 SDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHPYRE 330 (355)
Q Consensus 255 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~ 330 (355)
+.....+..+|.++...|++++|+..|+++++.+|++..+++.+|.++...|++++|+.+|+++++++|++.....
T Consensus 6 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~ 81 (91)
T 1na3_A 6 GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQ 81 (91)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred cccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHH
Confidence 3456788999999999999999999999999999999999999999999999999999999999999998855543
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.05 E-value=2.6e-09 Score=75.70 Aligned_cols=69 Identities=13% Similarity=0.122 Sum_probs=65.9
Q ss_pred hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 040440 257 LRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRN 325 (355)
Q Consensus 257 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~ 325 (355)
....+..+|.++...|++++|+..|+++++.+|.+..+++++|.++..+|++++|+..|+++++++|++
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 71 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTA 71 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSST
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Confidence 356788899999999999999999999999999999999999999999999999999999999999987
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.04 E-value=4.7e-08 Score=88.66 Aligned_cols=170 Identities=12% Similarity=0.014 Sum_probs=134.0
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCchHHHHHHHHHHHHcC---------CHHHHHHHHHHHHhhC-CCCHHH
Q 040440 151 ALQTLMEVRIKSQKLVEAVDVIDRLIELE-PNEFEWQLLKAQVQSYAG---------ESEAAIKGFEEILRKD-PLRVEA 219 (355)
Q Consensus 151 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g---------~~~~A~~~~~~~~~~~-p~~~~~ 219 (355)
.+..+...+.+.|++++|+++|+++.+.. .-+...|..+..++...+ +.++|.++|+++.... ..+...
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~t 107 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEAT 107 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHH
Confidence 45666788889999999999999998763 224456666666665544 3688999999998864 347778
Q ss_pred HHHHHHHHhccCchHHHHHHHHHHHHHHHHhh--ccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CChHHHH
Q 040440 220 YHGLVMAYDGSDKKLNEVEKRIEKAMERCKKE--KKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEP-RDFRPYL 296 (355)
Q Consensus 220 ~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~-~~~~~~~ 296 (355)
|..+...|.+.|+ +++|++++++. .....+...+..+...|.+.|+.++|.++|+++.+..- -+...|.
T Consensus 108 yn~lI~~~~~~g~--------~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~ 179 (501)
T 4g26_A 108 FTNGARLAVAKDD--------PEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELA 179 (501)
T ss_dssp HHHHHHHHHHHTC--------HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred HHHHHHHHHhcCC--------HHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHH
Confidence 8899999999999 88888888883 33455677788899999999999999999999987532 2778899
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh--CCCChhH
Q 040440 297 CQGIIYTLLRKKDEAEKQFEKFRRL--VPRNHPY 328 (355)
Q Consensus 297 ~l~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~ 328 (355)
.+..+|.+.|+.++|.++|++..+. .|+..++
T Consensus 180 ~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~ 213 (501)
T 4g26_A 180 ALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTF 213 (501)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHH
T ss_pred HHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHH
Confidence 9999999999999999999998764 4654444
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=3.1e-08 Score=81.00 Aligned_cols=183 Identities=10% Similarity=0.026 Sum_probs=123.6
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHc---------------------cCHHHHHHHHHHHHHcCCCchHHHHHHHHH
Q 040440 134 KEKEIEQHLAANPNDIEALQTLMEVRIKS---------------------QKLVEAVDVIDRLIELEPNEFEWQLLKAQV 192 (355)
Q Consensus 134 A~~~~~~~l~~~p~~~~~~~~la~~~~~~---------------------g~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 192 (355)
.+.+++-.+..+|++...+...+..|..- .++..|...|.++.+ |...+ +
T Consensus 51 ~Lk~~e~Ll~~~P~~~~Ll~~~a~ly~~Ya~afV~~~a~~~~~~~~~~~~~~~~RA~~Ly~ra~~--------y~~ra-L 121 (301)
T 3u64_A 51 VLKVYEALHLQNPAHRGLSLAVGRLYIMYANAFVQTPAQYLPEDEFEAQNEAYSRARKLYLRGAR--------YALSS-L 121 (301)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHTHHHHHTSCGGGHHHHHHHHHHHHHHHHHHHH--------HHHHH-H
T ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHhcCchhhcchhhHhhhhhhHHHHHHHHHHHHH--------HHHHH-H
Confidence 47888999999999988776666655421 123455555555542 11112 1
Q ss_pred HHHcCCHHHHHH-----HHHHHH-hhCCCCHHHHHHHHHHHhc---cCchHHHHHHHHHHHHHHHHh-hccCCc--hHHH
Q 040440 193 QSYAGESEAAIK-----GFEEIL-RKDPLRVEAYHGLVMAYDG---SDKKLNEVEKRIEKAMERCKK-EKKKSD--LRDF 260 (355)
Q Consensus 193 ~~~~g~~~~A~~-----~~~~~~-~~~p~~~~~~~~l~~~~~~---~~~~~~~a~~~~~~Al~~~~~-~~~~~~--~~~~ 260 (355)
......+.+++. -+.+++ +.+|++++.+++.|.+... ....--.++....+|...+++ +..+|. +...
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA 201 (301)
T 3u64_A 122 ETAYPGFTREVFSGDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAV 201 (301)
T ss_dssp HHHSTTHHHHHTSSCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHH
T ss_pred HHhCccHHHHHHhcchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHH
Confidence 222233333332 223333 4478889988877776533 211111233334555555555 344677 5668
Q ss_pred HHHHHHHHHHc-----cCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCC
Q 040440 261 KLLIAQIKVME-----SKHSEALRVYEELVKEEPRD-FRPYLCQGIIYTL-LRKKDEAEKQFEKFRRLVPRN 325 (355)
Q Consensus 261 ~~~la~~~~~~-----g~~~~A~~~~~~~l~~~~~~-~~~~~~l~~~~~~-~g~~~~A~~~~~~~l~~~p~~ 325 (355)
+..+|.+|... |+.++|.++|+++++++|+. ..+++.+|..+.. .|++++|..++++++...|..
T Consensus 202 ~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~ 273 (301)
T 3u64_A 202 WNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPES 273 (301)
T ss_dssp HHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGG
T ss_pred HHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Confidence 99999999995 99999999999999999975 9999999999988 599999999999999988763
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.01 E-value=9.9e-09 Score=76.18 Aligned_cols=47 Identities=23% Similarity=0.229 Sum_probs=19.3
Q ss_pred cCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH----cCCHHHHHHHHHHHHH
Q 040440 272 SKHSEALRVYEELVKEEPRDFRPYLCQGIIYTL----LRKKDEAEKQFEKFRR 320 (355)
Q Consensus 272 g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~l~ 320 (355)
+++++|+.+|+++.+. .++.+.+++|.+|.. .+++++|+.+|+++.+
T Consensus 75 ~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~ 125 (138)
T 1klx_A 75 KDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACR 125 (138)
T ss_dssp CCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHH
Confidence 3344444444444332 233444444444444 3444444444444443
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.99 E-value=4.9e-09 Score=72.77 Aligned_cols=69 Identities=12% Similarity=0.202 Sum_probs=61.3
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHcCCCchH-HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Q 040440 153 QTLMEVRIKSQKLVEAVDVIDRLIELEPNEFE-WQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYH 221 (355)
Q Consensus 153 ~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 221 (355)
+.+|..+...|++++|+..|+++++.+|++.. +++.+|.++...|++++|+..|+++++.+|++..++.
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 73 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQA 73 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHH
Confidence 56788888999999999999999999999888 9999999999999999999999999999998887763
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=98.97 E-value=1.9e-08 Score=74.58 Aligned_cols=121 Identities=12% Similarity=0.022 Sum_probs=98.1
Q ss_pred ccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhc----cCchHHHH
Q 040440 162 SQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDG----SDKKLNEV 237 (355)
Q Consensus 162 ~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~~~~~~~a 237 (355)
.+++++|+.+|+++.+..... +. +|.+|...+.+++|+++|+++.+. .++.+++.+|.+|.. .++
T Consensus 8 ~~d~~~A~~~~~~aa~~g~~~--a~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d----- 76 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELNEMF--GC--LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKD----- 76 (138)
T ss_dssp HHHHHHHHHHHHHHHHTTCTT--HH--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCC-----
T ss_pred ccCHHHHHHHHHHHHcCCCHh--hh--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCcc-----
Confidence 367899999999999886433 44 999999999999999999999986 789999999999987 566
Q ss_pred HHHHHHHHHHHHhhccCCchHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCChHHHHHHH
Q 040440 238 EKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVM----ESKHSEALRVYEELVKEEPRDFRPYLCQG 299 (355)
Q Consensus 238 ~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~~~~~~~~~~l~ 299 (355)
+++|++++++.... .+......+|.+|.. .+++++|+.+|+++.+. .+..+...++
T Consensus 77 ---~~~A~~~~~~Aa~~-g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~l~ 136 (138)
T 1klx_A 77 ---LRKAAQYYSKACGL-NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL--GSEDACGILN 136 (138)
T ss_dssp ---HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHC-
T ss_pred ---HHHHHHHHHHHHcC-CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHh
Confidence 66666666663222 568889999999999 89999999999999887 3455555444
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.96 E-value=9e-09 Score=71.40 Aligned_cols=68 Identities=21% Similarity=0.278 Sum_probs=63.5
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCChH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHH
Q 040440 262 LLIAQIKVMESKHSEALRVYEELVKEEPRDFR-PYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHPYR 329 (355)
Q Consensus 262 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~ 329 (355)
+..|.++...|++++|+..|+++++.+|++.. +++.+|.++...|++++|+.+|+++++++|++....
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 45688999999999999999999999999999 999999999999999999999999999999986543
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=98.95 E-value=1.2e-08 Score=69.69 Aligned_cols=80 Identities=13% Similarity=-0.059 Sum_probs=70.4
Q ss_pred CCchHHHHHHHHHHHHHccC---HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHH
Q 040440 254 KSDLRDFKLLIAQIKVMESK---HSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHPYRE 330 (355)
Q Consensus 254 ~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~ 330 (355)
.|++..++..+|.+++..++ .++|...++++++.+|+++.+++.+|..+++.|+|++|+.+|+++++.+|.+ ..+.
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~-~~~~ 80 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN-LDRV 80 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT-CCHH
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-ccHH
Confidence 47788999999999987666 7999999999999999999999999999999999999999999999999984 4443
Q ss_pred HHHH
Q 040440 331 YFVD 334 (355)
Q Consensus 331 ~~~~ 334 (355)
.+..
T Consensus 81 ~i~~ 84 (93)
T 3bee_A 81 TIIE 84 (93)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 3333
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=98.94 E-value=8.4e-09 Score=70.50 Aligned_cols=72 Identities=17% Similarity=0.074 Sum_probs=67.8
Q ss_pred CCCCHHHHHHHHHHHHHccC---HHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 040440 145 NPNDIEALQTLMEVRIKSQK---LVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLR 216 (355)
Q Consensus 145 ~p~~~~~~~~la~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~ 216 (355)
+|++++.+..+|.+++..++ .++|...++++++.+|+++.+++.+|..++..|+|++|+.+|+++++.+|.+
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~ 76 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN 76 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 68999999999999987666 7999999999999999999999999999999999999999999999999873
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.94 E-value=2.7e-07 Score=83.65 Aligned_cols=172 Identities=12% Similarity=-0.003 Sum_probs=115.0
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 040440 131 YEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEIL 210 (355)
Q Consensus 131 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 210 (355)
.+....+|++++...|..+..|...+..+...|+.++|..+|++++.. |.+...|+..+... ..+ +. ++++.
T Consensus 195 ~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~-e~~---~~---~~~l~ 266 (493)
T 2uy1_A 195 ESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVM-DEE---AV---YGDLK 266 (493)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHT-TCT---HH---HHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhc-chh---HH---HHHHH
Confidence 345678999999999999999999999999999999999999999999 98877666554431 111 11 22222
Q ss_pred hhC-------------CCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHcc-CHHH
Q 040440 211 RKD-------------PLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVMES-KHSE 276 (355)
Q Consensus 211 ~~~-------------p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~ 276 (355)
+.. +....+|...+....+.++ .+.+...+++| . .. +....++...|.+....+ +.+.
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~-~~~AR~i~~~A-~----~~--~~~~~v~i~~A~lE~~~~~d~~~ 338 (493)
T 2uy1_A 267 RKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRG-LELFRKLFIEL-G----NE--GVGPHVFIYCAFIEYYATGSRAT 338 (493)
T ss_dssp HHTC----------CHHHHHHHHHHHHHHHHHHHC-HHHHHHHHHHH-T----TS--CCCHHHHHHHHHHHHHHHCCSHH
T ss_pred HHHHhhccchhhhhcccccHHHHHHHHHHHHHcCC-HHHHHHHHHHh-h----CC--CCChHHHHHHHHHHHHHCCChHH
Confidence 110 0112345555555555544 66777777776 2 11 123445555566655555 4777
Q ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 040440 277 ALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKF 318 (355)
Q Consensus 277 A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 318 (355)
|..+|+.+++..|+++..|...+......|+.+.|..+|+++
T Consensus 339 ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 339 PYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRL 380 (493)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 777777777777777766666677777777777777777765
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.92 E-value=2.1e-08 Score=74.01 Aligned_cols=95 Identities=15% Similarity=0.119 Sum_probs=85.1
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcc---CHHHHHHHHHHHHHcC-C-CchHHHHHHHHHHHHcCCHHHHHH
Q 040440 130 SYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQ---KLVEAVDVIDRLIELE-P-NEFEWQLLKAQVQSYAGESEAAIK 204 (355)
Q Consensus 130 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~~~~~~-~-~~~~~~~~la~~~~~~g~~~~A~~ 204 (355)
....+.+.|.+.++.++.+.++.+.+|.++.+.+ +.++++.+++.+++.+ | +..+.++.+|..+++.|+|++|++
T Consensus 13 ~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHH
Confidence 4567788899999989999999999999999988 7779999999999998 6 567899999999999999999999
Q ss_pred HHHHHHhhCCCCHHHHHHHH
Q 040440 205 GFEEILRKDPLRVEAYHGLV 224 (355)
Q Consensus 205 ~~~~~~~~~p~~~~~~~~l~ 224 (355)
+++++++.+|++..+....-
T Consensus 93 y~~~lL~ieP~n~QA~~Lk~ 112 (152)
T 1pc2_A 93 YVRGLLQTEPQNNQAKELER 112 (152)
T ss_dssp HHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHhcCCCCHHHHHHHH
Confidence 99999999999988765443
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=98.87 E-value=1e-06 Score=79.87 Aligned_cols=169 Identities=9% Similarity=0.019 Sum_probs=134.8
Q ss_pred hccC-CHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcc---------CHHHHHHHHHHHHHcCC-CchHHHHHHHHHH
Q 040440 126 REDV-SYEEKEKEIEQHLAAN-PNDIEALQTLMEVRIKSQ---------KLVEAVDVIDRLIELEP-NEFEWQLLKAQVQ 193 (355)
Q Consensus 126 ~~~~-~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g---------~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~ 193 (355)
+.+. ++++|+++|+++.+.. .-+...|..+..++...+ +.++|.++|+++....- -+...|..+...|
T Consensus 36 c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~ 115 (501)
T 4g26_A 36 CSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLA 115 (501)
T ss_dssp TTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 4444 9999999999998853 236778888888876554 47899999999987632 3567888999999
Q ss_pred HHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhh--ccCCchHHHHHHHHHHHHH
Q 040440 194 SYAGESEAAIKGFEEILRKD-PLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKE--KKKSDLRDFKLLIAQIKVM 270 (355)
Q Consensus 194 ~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~--~~~~~~~~~~~~la~~~~~ 270 (355)
.+.|++++|.++|+++.+.. ..+...|..+...|.+.|+ .++|.+++++. .....+...+..+...|.+
T Consensus 116 ~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~--------~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~ 187 (501)
T 4g26_A 116 VAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGD--------ADKAYEVDAHMVESEVVPEEPELAALLKVSMD 187 (501)
T ss_dssp HHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred HhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCC--------HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhh
Confidence 99999999999999999874 3478889999999999999 89999999883 4455667788999999999
Q ss_pred ccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHH
Q 040440 271 ESKHSEALRVYEELVKE--EPRDFRPYLCQGIIYT 303 (355)
Q Consensus 271 ~g~~~~A~~~~~~~l~~--~~~~~~~~~~l~~~~~ 303 (355)
.|+.++|.++++++.+. .| +..++..+...+.
T Consensus 188 ~g~~d~A~~ll~~Mr~~g~~p-s~~T~~~l~~~F~ 221 (501)
T 4g26_A 188 TKNADKVYKTLQRLRDLVRQV-SKSTFDMIEEWFK 221 (501)
T ss_dssp TTCHHHHHHHHHHHHHHTSSB-CHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCCc-CHHHHHHHHHHHh
Confidence 99999999999999764 34 4455555544443
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.83 E-value=6e-08 Score=71.59 Aligned_cols=91 Identities=14% Similarity=0.079 Sum_probs=75.3
Q ss_pred HHHHHHHHh-hccCCchHHHHHHHHHHHHHcc---CHHHHHHHHHHHHHhC-C-CChHHHHHHHHHHHHcCCHHHHHHHH
Q 040440 242 EKAMERCKK-EKKKSDLRDFKLLIAQIKVMES---KHSEALRVYEELVKEE-P-RDFRPYLCQGIIYTLLRKKDEAEKQF 315 (355)
Q Consensus 242 ~~Al~~~~~-~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~~l~~~-~-~~~~~~~~l~~~~~~~g~~~~A~~~~ 315 (355)
..+.+.+.+ ....+.+.+..+.+|+++.+.+ +.++++..++++++.+ | ++.+.++++|..++++|+|++|++++
T Consensus 15 ~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~ 94 (152)
T 1pc2_A 15 LKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYV 94 (152)
T ss_dssp HHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHH
Confidence 333344433 3345678899999999999988 7779999999999998 6 56889999999999999999999999
Q ss_pred HHHHHhCCCChhHHHHH
Q 040440 316 EKFRRLVPRNHPYREYF 332 (355)
Q Consensus 316 ~~~l~~~p~~~~~~~~~ 332 (355)
+++++++|++.......
T Consensus 95 ~~lL~ieP~n~QA~~Lk 111 (152)
T 1pc2_A 95 RGLLQTEPQNNQAKELE 111 (152)
T ss_dssp HHHHHHCTTCHHHHHHH
T ss_pred HHHHhcCCCCHHHHHHH
Confidence 99999999986654443
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=98.79 E-value=1.7e-07 Score=79.92 Aligned_cols=144 Identities=15% Similarity=0.066 Sum_probs=101.2
Q ss_pred HHHcCCCCHHHH--HHHHHHHHHcc---CHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCH----H---HHH-HHHH
Q 040440 141 HLAANPNDIEAL--QTLMEVRIKSQ---KLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGES----E---AAI-KGFE 207 (355)
Q Consensus 141 ~l~~~p~~~~~~--~~la~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~----~---~A~-~~~~ 207 (355)
+....|.+..+| +..|..++..+ +..+|+.+|+++++++|+...++..++.+|.....+ . +++ ..++
T Consensus 186 ~~~~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~ 265 (372)
T 3ly7_A 186 LQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEID 265 (372)
T ss_dssp HHHHSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHH
T ss_pred HhccCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHH
Confidence 344566766554 34556666544 458899999999999999999988888777532111 1 111 1222
Q ss_pred H--HHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 040440 208 E--ILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELV 285 (355)
Q Consensus 208 ~--~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 285 (355)
. .+..+|.++.++..++..+...|+ .+.+...+++|+.+ ++ +...+..+|.++...|++++|++.|++++
T Consensus 266 a~~a~~~~~~~a~~~~alal~~l~~gd-~d~A~~~l~rAl~L------n~-s~~a~~llG~~~~~~G~~~eA~e~~~~Al 337 (372)
T 3ly7_A 266 NIVTLPELNNLSIIYQIKAVSALVKGK-TDESYQAINTGIDL------EM-SWLNYVLLGKVYEMKGMNREAADAYLTAF 337 (372)
T ss_dssp HHHTCGGGTTCHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHH------CC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHhcccCCcCHHHHHHHHHHHHhCCC-HHHHHHHHHHHHhc------CC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 2 224468899999999988888888 44444444444444 33 46677899999999999999999999999
Q ss_pred HhCCCCh
Q 040440 286 KEEPRDF 292 (355)
Q Consensus 286 ~~~~~~~ 292 (355)
.++|...
T Consensus 338 rL~P~~~ 344 (372)
T 3ly7_A 338 NLRPGAN 344 (372)
T ss_dssp HHSCSHH
T ss_pred hcCCCcC
Confidence 9999654
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.79 E-value=1e-06 Score=79.82 Aligned_cols=192 Identities=8% Similarity=0.007 Sum_probs=129.0
Q ss_pred CHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHc--c-----CHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHH
Q 040440 130 SYEEKEKEIEQHLAANPN-DIEALQTLMEVRIKS--Q-----KLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEA 201 (355)
Q Consensus 130 ~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~--g-----~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 201 (355)
.+..|...++.+....+. +...|......-... | ..+.....|++++...|..+..|+..+..+...|+.++
T Consensus 152 ~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ 231 (493)
T 2uy1_A 152 IFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEK 231 (493)
T ss_dssp HHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHH
Confidence 344455556655543322 444565544432221 0 03457789999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh----hccCCchHHHHHHHHHHHHHccCHHHH
Q 040440 202 AIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK----EKKKSDLRDFKLLIAQIKVMESKHSEA 277 (355)
Q Consensus 202 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~----~~~~~~~~~~~~~la~~~~~~g~~~~A 277 (355)
|...|++++.. |.+...+...+... ..++ ..+.+.++...++. .........+|...+..+.+.++.+.|
T Consensus 232 ar~i~erAi~~-P~~~~l~~~y~~~~-e~~~----~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~A 305 (493)
T 2uy1_A 232 AKKVVERGIEM-SDGMFLSLYYGLVM-DEEA----VYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELF 305 (493)
T ss_dssp HHHHHHHHHHH-CCSSHHHHHHHHHT-TCTH----HHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHhC-CCcHHHHHHHHhhc-chhH----HHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHH
Confidence 99999999999 99887776555442 1122 11111111110110 001122346688888888889999999
Q ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCChhH
Q 040440 278 LRVYEELVKEEPRDFRPYLCQGIIYTLLR-KKDEAEKQFEKFRRLVPRNHPY 328 (355)
Q Consensus 278 ~~~~~~~l~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~l~~~p~~~~~ 328 (355)
..+|+++ ...+....+|...+.+....| +.+.|..+|+.+++..|+.+.+
T Consensus 306 R~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~ 356 (493)
T 2uy1_A 306 RKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLL 356 (493)
T ss_dssp HHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHH
Confidence 9999999 433335667777777777666 6999999999999999987654
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=98.75 E-value=8.7e-08 Score=85.03 Aligned_cols=115 Identities=10% Similarity=-0.018 Sum_probs=93.1
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHc-----CCCch---HHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCCH---H
Q 040440 155 LMEVRIKSQKLVEAVDVIDRLIEL-----EPNEF---EWQLLKAQVQSYAGESEAAIKGFEEILRK-----DPLRV---E 218 (355)
Q Consensus 155 la~~~~~~g~~~~A~~~~~~~~~~-----~~~~~---~~~~~la~~~~~~g~~~~A~~~~~~~~~~-----~p~~~---~ 218 (355)
...-+...|+|++|+..++++++. .++++ ..+.++|.+|..+|+|++|+.+++++++. .++++ .
T Consensus 293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~ 372 (429)
T 3qwp_A 293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGV 372 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHH
Confidence 344566789999999999999975 44454 46888999999999999999999999976 35555 4
Q ss_pred HHHHHHHHHhccCchHHHHHHHHHHHHHHHHh--hccCCchHHHHHHHHHHHHH
Q 040440 219 AYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK--EKKKSDLRDFKLLIAQIKVM 270 (355)
Q Consensus 219 ~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~--~~~~~~~~~~~~~la~~~~~ 270 (355)
.++++|.+|..+|+ +++|...+++|+++++. ..++|....++..++.+...
T Consensus 373 ~l~nLa~~~~~~g~-~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e 425 (429)
T 3qwp_A 373 QVMKVGKLQLHQGM-FPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDAN 425 (429)
T ss_dssp HHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Confidence 58899999999998 89999999999999988 45666667777777766654
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=98.73 E-value=2.2e-07 Score=65.07 Aligned_cols=77 Identities=13% Similarity=0.038 Sum_probs=68.4
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-------CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH
Q 040440 148 DIEALQTLMEVRIKSQKLVEAVDVIDRLIELE-------PNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAY 220 (355)
Q Consensus 148 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 220 (355)
++.-.+.+|..++..|+|+.|+..|+++++.. .....++..+|.++.++|++++|+.+++++++..|++..+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~ 83 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN 83 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 35567899999999999999999999999863 34567899999999999999999999999999999999887
Q ss_pred HHHH
Q 040440 221 HGLV 224 (355)
Q Consensus 221 ~~l~ 224 (355)
.++.
T Consensus 84 ~n~~ 87 (104)
T 2v5f_A 84 GNLK 87 (104)
T ss_dssp HHHH
T ss_pred hhHH
Confidence 7665
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=98.70 E-value=1.5e-07 Score=83.44 Aligned_cols=100 Identities=16% Similarity=0.127 Sum_probs=82.4
Q ss_pred cCchHHHHHHHHHHHHHHHHh--hccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CCCC---hHHHHHHH
Q 040440 230 SDKKLNEVEKRIEKAMERCKK--EKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKE-----EPRD---FRPYLCQG 299 (355)
Q Consensus 230 ~~~~~~~a~~~~~~Al~~~~~--~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-----~~~~---~~~~~~l~ 299 (355)
.|+ +++|...+++++++.++ ...++.....+.++|.+|..+|+|++|+.+++++++. .+++ ...++++|
T Consensus 311 ~g~-~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 311 YKS-PSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TSC-HHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred ccC-HHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 344 77888888888888877 4566777888999999999999999999999999964 3444 45689999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHh-----CCCChhHHH
Q 040440 300 IIYTLLRKKDEAEKQFEKFRRL-----VPRNHPYRE 330 (355)
Q Consensus 300 ~~~~~~g~~~~A~~~~~~~l~~-----~p~~~~~~~ 330 (355)
.+|..+|++++|+.+|++++++ .|+++....
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~ 425 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISE 425 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHH
Confidence 9999999999999999999885 466655544
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=98.65 E-value=1.2e-07 Score=84.03 Aligned_cols=100 Identities=7% Similarity=-0.067 Sum_probs=84.8
Q ss_pred HHcCCHHHHHHHHHHHHhh-----CCCCH---HHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh--hccCCchHHHHHH
Q 040440 194 SYAGESEAAIKGFEEILRK-----DPLRV---EAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK--EKKKSDLRDFKLL 263 (355)
Q Consensus 194 ~~~g~~~~A~~~~~~~~~~-----~p~~~---~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~--~~~~~~~~~~~~~ 263 (355)
...|+|++|+..+++++++ .|+++ ..+.+++.+|..+|+ +++|..+++++++++++ ...+|+....+.+
T Consensus 309 ~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~-~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 387 (433)
T 3qww_A 309 KHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQD-WEGALKYGQKIIKPYSKHYPVYSLNVASMWLK 387 (433)
T ss_dssp TTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcC-HHHHHHHHHHHHHHHHHHcCCCChHHHHHHHH
Confidence 3568999999999999986 45665 457899999999998 99999999999999998 4667888888999
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHh-----CCCChHH
Q 040440 264 IAQIKVMESKHSEALRVYEELVKE-----EPRDFRP 294 (355)
Q Consensus 264 la~~~~~~g~~~~A~~~~~~~l~~-----~~~~~~~ 294 (355)
+|.+|..+|++++|+..|++++++ .|+++.+
T Consensus 388 La~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~ 423 (433)
T 3qww_A 388 LGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYI 423 (433)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHH
T ss_pred HHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHH
Confidence 999999999999999999999874 4555544
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=98.64 E-value=1.8e-07 Score=82.95 Aligned_cols=112 Identities=8% Similarity=-0.037 Sum_probs=89.4
Q ss_pred HHHHHcCCHHHHHHHHHHHHhh-----CCCCH---HHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh--hccCCchHHH
Q 040440 191 QVQSYAGESEAAIKGFEEILRK-----DPLRV---EAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK--EKKKSDLRDF 260 (355)
Q Consensus 191 ~~~~~~g~~~~A~~~~~~~~~~-----~p~~~---~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~--~~~~~~~~~~ 260 (355)
.-+..+|+|++|+..+++++++ .++++ ..+.+++.+|..+|+ +++|+.+++++++++++ ...+|.....
T Consensus 295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~-~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGL-LEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhcc-HHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 3366789999999999999976 35554 457899999999998 89999999999999988 4667777788
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHh-----CCCChH---HHHHHHHHHH
Q 040440 261 KLLIAQIKVMESKHSEALRVYEELVKE-----EPRDFR---PYLCQGIIYT 303 (355)
Q Consensus 261 ~~~la~~~~~~g~~~~A~~~~~~~l~~-----~~~~~~---~~~~l~~~~~ 303 (355)
+.++|.+|..+|++++|+..|++++++ .|+++. ++.+|+.+..
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~ 424 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDA 424 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Confidence 999999999999999999999999864 455543 3344555443
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=98.64 E-value=4.7e-07 Score=63.31 Aligned_cols=71 Identities=10% Similarity=-0.026 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhH
Q 040440 258 RDFKLLIAQIKVMESKHSEALRVYEELVKEE-------PRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHPY 328 (355)
Q Consensus 258 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 328 (355)
..-.+.+|..++..|+|+.|+..|+++++.. .....++..+|.++.++|++++|+.++++++++.|++...
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~ 82 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRA 82 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHH
Confidence 4456789999999999999999999999863 2356789999999999999999999999999999998544
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=98.55 E-value=4e-07 Score=74.46 Aligned_cols=86 Identities=10% Similarity=0.089 Sum_probs=76.8
Q ss_pred CHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHc-----cCHHHHHHHHHHHHHcCCCc-hHHHHHHHHHHHH-cCCHH
Q 040440 130 SYEEKEKEIEQHLAANPN--DIEALQTLMEVRIKS-----QKLVEAVDVIDRLIELEPNE-FEWQLLKAQVQSY-AGESE 200 (355)
Q Consensus 130 ~~~~A~~~~~~~l~~~p~--~~~~~~~la~~~~~~-----g~~~~A~~~~~~~~~~~~~~-~~~~~~la~~~~~-~g~~~ 200 (355)
...+|...++++++.+|+ +..+|..+|.+|... |+.++|..+|+++++++|+. ...++.+|..++. .|+++
T Consensus 178 ~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~ 257 (301)
T 3u64_A 178 TVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRA 257 (301)
T ss_dssp HHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHH
T ss_pred hHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHH
Confidence 567889999999999999 677999999999985 99999999999999999975 9999999998887 49999
Q ss_pred HHHHHHHHHHhhCCC
Q 040440 201 AAIKGFEEILRKDPL 215 (355)
Q Consensus 201 ~A~~~~~~~~~~~p~ 215 (355)
++..++++++...|.
T Consensus 258 ~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 258 GFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHcCCCC
Confidence 999999999998765
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=98.36 E-value=7.6e-06 Score=58.11 Aligned_cols=95 Identities=14% Similarity=0.090 Sum_probs=81.4
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHH---HHHHHHHHHHcC-C-CchHHHHHHHHHHHHcCCHHHHHH
Q 040440 130 SYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVE---AVDVIDRLIELE-P-NEFEWQLLKAQVQSYAGESEAAIK 204 (355)
Q Consensus 130 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~---A~~~~~~~~~~~-~-~~~~~~~~la~~~~~~g~~~~A~~ 204 (355)
....+.+.|.+.+..++...++.+.+|.++++.++... ++.+++..+..+ | ...+.++.+|..+++.|+|++|+.
T Consensus 16 ~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~ 95 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 95 (126)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHH
Confidence 44566788888888888899999999999998887766 999999998876 4 456789999999999999999999
Q ss_pred HHHHHHhhCCCCHHHHHHHH
Q 040440 205 GFEEILRKDPLRVEAYHGLV 224 (355)
Q Consensus 205 ~~~~~~~~~p~~~~~~~~l~ 224 (355)
+++.+++..|++..+.....
T Consensus 96 ~~~~lL~~eP~n~QA~~Lk~ 115 (126)
T 1nzn_A 96 YVRGLLQTEPQNNQAKELER 115 (126)
T ss_dssp HHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHH
Confidence 99999999999988765433
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.29 E-value=1.1e-05 Score=59.84 Aligned_cols=124 Identities=10% Similarity=0.026 Sum_probs=73.0
Q ss_pred hccCCHHHHHHHHHHHHHcCCCC---------HHHHHHHHHHHHHccCHHHHHHHHHHHHHcC---CCchHHHHHHHHHH
Q 040440 126 REDVSYEEKEKEIEQHLAANPND---------IEALQTLMEVRIKSQKLVEAVDVIDRLIELE---PNEFEWQLLKAQVQ 193 (355)
Q Consensus 126 ~~~~~~~~A~~~~~~~l~~~p~~---------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~la~~~ 193 (355)
++.+.|+.|+-....++....++ ..++..+|+.++..|+|.+|...|+++++.. +........++.
T Consensus 31 ~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~-- 108 (167)
T 3ffl_A 31 AAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGN-- 108 (167)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------------
T ss_pred HHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccc--
Confidence 55556666666666655432211 2356666667777777777777777665441 111111101100
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHH
Q 040440 194 SYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKV 269 (355)
Q Consensus 194 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~ 269 (355)
...+.. ... .+.+.++.+.++.||...++ +++|+..++.+......+.+...||++|.
T Consensus 109 --~ss~p~-------s~~-~~~e~Elkykia~C~~~l~~--------~~~Ai~~Le~Ip~k~Rt~kvnm~LakLy~ 166 (167)
T 3ffl_A 109 --SASTPQ-------SQC-LPSEIEVKYKLAECYTVLKQ--------DKDAIAILDGIPSRQRTPKINMLLANLYK 166 (167)
T ss_dssp -----------------C-CCCHHHHHHHHHHHHHHTTC--------HHHHHHHHHTSCGGGCCHHHHHHHHHHCC
T ss_pred --cCCCcc-------ccc-ccchHHHHHHHHHHHHHHCC--------HHHHHHHHhcCCchhcCHHHHHHHHHHhc
Confidence 000000 011 13356788999999999999 99999999998777778888888888763
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=98.28 E-value=8.3e-06 Score=57.91 Aligned_cols=79 Identities=15% Similarity=0.095 Sum_probs=68.0
Q ss_pred CCchHHHHHHHHHHHHHccCHHH---HHHHHHHHHHhC-C-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhH
Q 040440 254 KSDLRDFKLLIAQIKVMESKHSE---ALRVYEELVKEE-P-RDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHPY 328 (355)
Q Consensus 254 ~~~~~~~~~~la~~~~~~g~~~~---A~~~~~~~l~~~-~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 328 (355)
.+......+.+|+++.+.++... ++..++..+..+ | ...+..+.+|..+++.|+|++|+.+++.+++..|+|...
T Consensus 31 ~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA 110 (126)
T 1nzn_A 31 GSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQA 110 (126)
T ss_dssp SCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHH
Confidence 45778899999999998887766 999999998876 4 466889999999999999999999999999999999666
Q ss_pred HHHH
Q 040440 329 REYF 332 (355)
Q Consensus 329 ~~~~ 332 (355)
..+.
T Consensus 111 ~~Lk 114 (126)
T 1nzn_A 111 KELE 114 (126)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=98.13 E-value=6e-05 Score=54.72 Aligned_cols=116 Identities=7% Similarity=-0.066 Sum_probs=79.3
Q ss_pred CCCchHHHHHHHHHHHHcCCH------HHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhc
Q 040440 179 EPNEFEWQLLKAQVQSYAGES------EAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEK 252 (355)
Q Consensus 179 ~~~~~~~~~~la~~~~~~g~~------~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~ 252 (355)
.|++.+.|..........|+. ++-++.|++++..-|.... .
T Consensus 9 ~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~---------------------------------~ 55 (161)
T 4h7y_A 9 MANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKY---------------------------------G 55 (161)
T ss_dssp -CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGG---------------------------------T
T ss_pred CCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCcccc---------------------------------c
Confidence 566666666666655555666 5555666666655443210 0
Q ss_pred cCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhH
Q 040440 253 KKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHPY 328 (355)
Q Consensus 253 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 328 (355)
.......+|...|.. ...++.++|.++|+.++..+..-..+|...|....++|+...|.+.+.+++...|.....
T Consensus 56 ~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~ 130 (161)
T 4h7y_A 56 QNESFARIQVRFAEL-KAIQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEM 130 (161)
T ss_dssp TCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHH
T ss_pred cHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHH
Confidence 011112334444544 455899999999999998877778889999999999999999999999999999986333
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.07 E-value=0.00019 Score=51.74 Aligned_cols=78 Identities=9% Similarity=-0.010 Sum_probs=67.3
Q ss_pred CCchHHHHHHHHHHHHHccCH---HHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHH
Q 040440 254 KSDLRDFKLLIAQIKVMESKH---SEALRVYEELVKEEPR-DFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHPYR 329 (355)
Q Consensus 254 ~~~~~~~~~~la~~~~~~g~~---~~A~~~~~~~l~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~ 329 (355)
........+.+|+++.+..+. .+++..++..+...|. ..+..+.+|..++++|+|++|+.+.+.+++..|+|....
T Consensus 35 ~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~ 114 (144)
T 1y8m_A 35 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG 114 (144)
T ss_dssp TTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHH
T ss_pred CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHH
Confidence 356788899999999987654 5799999999998884 567899999999999999999999999999999996665
Q ss_pred HH
Q 040440 330 EY 331 (355)
Q Consensus 330 ~~ 331 (355)
.+
T Consensus 115 ~L 116 (144)
T 1y8m_A 115 AL 116 (144)
T ss_dssp HH
T ss_pred HH
Confidence 44
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=98.01 E-value=0.00027 Score=50.29 Aligned_cols=81 Identities=9% Similarity=-0.032 Sum_probs=67.9
Q ss_pred cCCchHHHHHHHHHHHHHccCH---HHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhH
Q 040440 253 KKSDLRDFKLLIAQIKVMESKH---SEALRVYEELVKEEPR-DFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHPY 328 (355)
Q Consensus 253 ~~~~~~~~~~~la~~~~~~g~~---~~A~~~~~~~l~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 328 (355)
.........+.+|+++++..+. .+++..++..++..|. ..+.++.+|..+.++|+|++|+.+.+.+++..|+|...
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA 114 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 114 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHH
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHH
Confidence 3445678889999999987654 5799999999998884 57889999999999999999999999999999999666
Q ss_pred HHHHH
Q 040440 329 REYFV 333 (355)
Q Consensus 329 ~~~~~ 333 (355)
..+..
T Consensus 115 ~~Lk~ 119 (134)
T 3o48_A 115 GALKS 119 (134)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 54433
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.97 E-value=6.8e-05 Score=55.68 Aligned_cols=133 Identities=10% Similarity=0.045 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCch---------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---CCCH
Q 040440 150 EALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEF---------EWQLLKAQVQSYAGESEAAIKGFEEILRKD---PLRV 217 (355)
Q Consensus 150 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~---------~~~~~la~~~~~~g~~~~A~~~~~~~~~~~---p~~~ 217 (355)
.++..-...++..|.|+.|+-....++....++. .++..+|..++..|+|..|...|+++++.. +...
T Consensus 21 ~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~ 100 (167)
T 3ffl_A 21 MNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTS 100 (167)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC----
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3456666777888999999999888776632222 267888999999999999999999988753 2332
Q ss_pred HHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHH
Q 040440 218 EAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLC 297 (355)
Q Consensus 218 ~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~ 297 (355)
.....++. ... +.. ......+.++.+.++.||.+.|++++|+..++.+-.. ...+.+...
T Consensus 101 s~~~~~~~----~ss--------~p~-------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k-~Rt~kvnm~ 160 (167)
T 3ffl_A 101 KVRPSTGN----SAS--------TPQ-------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSR-QRTPKINML 160 (167)
T ss_dssp -----------------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGG-GCCHHHHHH
T ss_pred Cccccccc----cCC--------Ccc-------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCch-hcCHHHHHH
Confidence 22111110 000 000 0112456788888999999999999999988764221 235667777
Q ss_pred HHHHH
Q 040440 298 QGIIY 302 (355)
Q Consensus 298 l~~~~ 302 (355)
||.+|
T Consensus 161 LakLy 165 (167)
T 3ffl_A 161 LANLY 165 (167)
T ss_dssp HHHHC
T ss_pred HHHHh
Confidence 77665
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=97.81 E-value=0.00091 Score=48.61 Aligned_cols=120 Identities=13% Similarity=0.047 Sum_probs=80.1
Q ss_pred cCCCCHHHHHHHHHHHHHccCH------HHHHHHHHHHHHcCCCch--------HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 040440 144 ANPNDIEALQTLMEVRIKSQKL------VEAVDVIDRLIELEPNEF--------EWQLLKAQVQSYAGESEAAIKGFEEI 209 (355)
Q Consensus 144 ~~p~~~~~~~~la~~~~~~g~~------~~A~~~~~~~~~~~~~~~--------~~~~~la~~~~~~g~~~~A~~~~~~~ 209 (355)
..|++.+.|.......-..|+. ++-++.|++++..-|... ..|...+.. ...+|.++|.+.|+.+
T Consensus 8 ~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a 86 (161)
T 4h7y_A 8 MMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMA 86 (161)
T ss_dssp --CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHH
Confidence 5799999999999998888999 999999999998766432 123444432 3445666666666665
Q ss_pred HhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Q 040440 210 LRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEP 289 (355)
Q Consensus 210 ~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~ 289 (355)
+...... ..+|...|....++|+..+|.+++.+++.+.|
T Consensus 87 ~~~hKkF-----------------------------------------AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~ 125 (161)
T 4h7y_A 87 RANCKKF-----------------------------------------AFVHISFAQFELSQGNVKKSKQLLQKAVERGA 125 (161)
T ss_dssp HHHCTTB-----------------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHhHHH-----------------------------------------HHHHHHHHHHHHHcccHHHHHHHHHHHhccCC
Confidence 5543222 45566667777788888888888888888888
Q ss_pred CChHHHHHHHHHHHHcC
Q 040440 290 RDFRPYLCQGIIYTLLR 306 (355)
Q Consensus 290 ~~~~~~~~l~~~~~~~g 306 (355)
...... ..+..-.+.|
T Consensus 126 k~~~~l-e~a~~nl~~~ 141 (161)
T 4h7y_A 126 VPLEML-EIALRNLNLQ 141 (161)
T ss_dssp BCHHHH-HHHHHHHHTT
T ss_pred CcHHHH-HHHHHhhhcC
Confidence 654433 3333333444
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.71 E-value=0.00096 Score=62.71 Aligned_cols=124 Identities=10% Similarity=0.105 Sum_probs=87.7
Q ss_pred HcCC-HHHHHHHHHHHHhhCCCCHHHHH-HHHHHHhccCchHHHHHHHHHHHHHHHHh-hcc-C----------CchHHH
Q 040440 195 YAGE-SEAAIKGFEEILRKDPLRVEAYH-GLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKK-K----------SDLRDF 260 (355)
Q Consensus 195 ~~g~-~~~A~~~~~~~~~~~p~~~~~~~-~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~-~----------~~~~~~ 260 (355)
..|+ ++.|++.+++..+.+|.....+. .+..+....++..-++.....++++.+.. ... . +....+
T Consensus 260 ~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~L 339 (754)
T 4gns_B 260 ITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDL 339 (754)
T ss_dssp TCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHH
Confidence 3455 57899999999998886544332 12222233333344455556666654332 111 1 112345
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 040440 261 KLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKF 318 (355)
Q Consensus 261 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 318 (355)
+...+..+...|+++-|+++.++++...|.+...|+.|+.+|..+|+|+.|+-.+..+
T Consensus 340 L~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 340 LNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 6667888899999999999999999999999999999999999999999999887765
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.69 E-value=0.0025 Score=45.96 Aligned_cols=77 Identities=12% Similarity=-0.005 Sum_probs=66.7
Q ss_pred CCCHHHHHHHHHHHHHccCH---HHHHHHHHHHHHcCC-CchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Q 040440 146 PNDIEALQTLMEVRIKSQKL---VEAVDVIDRLIELEP-NEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYH 221 (355)
Q Consensus 146 p~~~~~~~~la~~~~~~g~~---~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 221 (355)
.-..++.+.+|.++.+..+. .+++.+++..+...| ...+.++.+|..+++.|+|++|+.+.+.+++..|+|..+..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~ 115 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 115 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 45788999999999987654 579999999999888 45668999999999999999999999999999999987754
Q ss_pred H
Q 040440 222 G 222 (355)
Q Consensus 222 ~ 222 (355)
.
T Consensus 116 L 116 (144)
T 1y8m_A 116 L 116 (144)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=97.62 E-value=0.0012 Score=46.97 Aligned_cols=77 Identities=12% Similarity=-0.015 Sum_probs=66.1
Q ss_pred CHHHHHHHHHHHHHccCH---HHHHHHHHHHHHcCCC-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 040440 148 DIEALQTLMEVRIKSQKL---VEAVDVIDRLIELEPN-EFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGL 223 (355)
Q Consensus 148 ~~~~~~~la~~~~~~g~~---~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 223 (355)
.+.+.+.+|.++++..+. .+++.+++..++.+|. ..+.++.+|..+++.|+|++|+++.+.+++..|++..+....
T Consensus 39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk 118 (134)
T 3o48_A 39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALK 118 (134)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence 678899999999877654 5699999999988884 467899999999999999999999999999999998876443
Q ss_pred H
Q 040440 224 V 224 (355)
Q Consensus 224 ~ 224 (355)
.
T Consensus 119 ~ 119 (134)
T 3o48_A 119 S 119 (134)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=97.49 E-value=0.0036 Score=54.28 Aligned_cols=172 Identities=13% Similarity=-0.031 Sum_probs=114.2
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHH-----HHHHHHHHHH-cCCHHHHHHHHHHHHhhCCCCHHH----
Q 040440 150 EALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEW-----QLLKAQVQSY-AGESEAAIKGFEEILRKDPLRVEA---- 219 (355)
Q Consensus 150 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-----~~~la~~~~~-~g~~~~A~~~~~~~~~~~p~~~~~---- 219 (355)
.+.+.+|..|...|++++-.+++......-+.-+.+ ...+...+.. -+..+.-++.+.++++...+....
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~ 99 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQ 99 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457789999999999999999988765443322222 2222233322 355666677777777653322222
Q ss_pred --HHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC---CCCh--
Q 040440 220 --YHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEE---PRDF-- 292 (355)
Q Consensus 220 --~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~---~~~~-- 292 (355)
-..++..|...|+ +.++...+.+..+.+++........+++.....+|...|++.++...+.++.... +.++
T Consensus 100 ~l~~kL~~l~~~~~~-y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i 178 (394)
T 3txn_A 100 SLEARLIALYFDTAL-YTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKV 178 (394)
T ss_dssp HHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHhhh-HHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHH
Confidence 2378999999999 4444444444444444333334456668888899999999999999999987542 1232
Q ss_pred --HHHHHHHHHHH-HcCCHHHHHHHHHHHHHhC
Q 040440 293 --RPYLCQGIIYT-LLRKKDEAEKQFEKFRRLV 322 (355)
Q Consensus 293 --~~~~~l~~~~~-~~g~~~~A~~~~~~~l~~~ 322 (355)
.....-|..+. ..++|.+|..+|-++++-.
T Consensus 179 ~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f 211 (394)
T 3txn_A 179 QGALDLQSGILHAADERDFKTAFSYFYEAFEGF 211 (394)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcc
Confidence 34556688888 8999999999999987543
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=97.13 E-value=0.026 Score=48.91 Aligned_cols=139 Identities=14% Similarity=0.090 Sum_probs=98.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH-----HHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchH
Q 040440 184 EWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRV-----EAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLR 258 (355)
Q Consensus 184 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~-----~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~ 258 (355)
.+.+.+|.+|...|++++-.+++.......+.-+ .....+...+....+..+.-.....++++..+..+...-..
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~ 99 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQ 99 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567899999999999999998887665533322 23445566665555545555555666666655422221122
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--C----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 040440 259 DFKLLIAQIKVMESKHSEALRVYEELVKEEPR--D----FRPYLCQGIIYTLLRKKDEAEKQFEKFRRLV 322 (355)
Q Consensus 259 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~--~----~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 322 (355)
.+-..+|.+|+..|+|.+|.+.+.++.+.... + .+++..-..+|...|++.++...+.++....
T Consensus 100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~ 169 (394)
T 3txn_A 100 SLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTA 169 (394)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhh
Confidence 34558899999999999999999998874321 2 3567777889999999999999999987653
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.90 E-value=0.017 Score=55.87 Aligned_cols=83 Identities=7% Similarity=-0.014 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHc----CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHH
Q 040440 150 EALQTLMEVRIKSQKLVEAVDVIDRLIEL----EPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKD-PLRVEAYHGLV 224 (355)
Q Consensus 150 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~ 224 (355)
..+..+...|.+.|+.++|..+|+++.+. ..-+...|..+...|++.|+.++|.++|+++.+.. .-|...|..+.
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI 207 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL 207 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 34666677777777777777777654432 12244566666666777777777777777776653 23555666666
Q ss_pred HHHhccCc
Q 040440 225 MAYDGSDK 232 (355)
Q Consensus 225 ~~~~~~~~ 232 (355)
.++++.|+
T Consensus 208 ~glcK~G~ 215 (1134)
T 3spa_A 208 QCMGRQDQ 215 (1134)
T ss_dssp HHHHHHTC
T ss_pred HHHHhCCC
Confidence 66666665
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.86 E-value=0.027 Score=54.47 Aligned_cols=97 Identities=8% Similarity=-0.043 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh----CCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhh--ccCCch
Q 040440 184 EWQLLKAQVQSYAGESEAAIKGFEEILRK----DPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKE--KKKSDL 257 (355)
Q Consensus 184 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~----~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~--~~~~~~ 257 (355)
..+..+...|++.|+.++|.++|+++.+. -.-+...|..+...|++.|+ +++|++++++. .....+
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~--------~~eA~~Lf~eM~~~G~~PD 199 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGA--------FKELVYVLFMVKDAGLTPD 199 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTC--------HHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCC--------HHHHHHHHHHHHHcCCCCc
Confidence 35778889999999999999999886543 24577889999999999999 99999999983 445566
Q ss_pred HHHHHHHHHHHHHccC-HHHHHHHHHHHHHhC
Q 040440 258 RDFKLLIAQIKVMESK-HSEALRVYEELVKEE 288 (355)
Q Consensus 258 ~~~~~~la~~~~~~g~-~~~A~~~~~~~l~~~ 288 (355)
...|..+..++.+.|+ .++|.++|+++.+..
T Consensus 200 vvTYntLI~glcK~G~~~e~A~~Ll~EM~~kG 231 (1134)
T 3spa_A 200 LLSYAAALQCMGRQDQDAGTIERCLEQMSQEG 231 (1134)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Confidence 7778888888999887 578899999998753
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.82 E-value=0.012 Score=55.29 Aligned_cols=111 Identities=11% Similarity=0.086 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHH--H-ccCHHHHHHHHHHHHHc--------CCCch----------HHHHHH
Q 040440 131 YEEKEKEIEQHLAANPNDIEALQTLMEVRI--K-SQKLVEAVDVIDRLIEL--------EPNEF----------EWQLLK 189 (355)
Q Consensus 131 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~--~-~g~~~~A~~~~~~~~~~--------~~~~~----------~~~~~l 189 (355)
++.|+.++++..+.+|.....+ ..+.+.. . ..+--+|+..+.+.++. .+.+. ..+..-
T Consensus 265 ~~~a~~~le~L~~~~p~~~~~~-~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~LL~~Q 343 (754)
T 4gns_B 265 VDFTIDYLKGLTKKDPIHDIYY-KTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDLLNIQ 343 (754)
T ss_dssp HHHHHHHHHHHHHHCGGGHHHH-HHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCCchhHHH-HHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHHHHHH
Confidence 5789999999999998764432 2222222 1 22344577777776632 22221 234445
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh
Q 040440 190 AQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK 250 (355)
Q Consensus 190 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~ 250 (355)
+..+...|+++-|+++.++++...|.....|+.|+.+|...|+ |+.|+-.+..
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d--------~e~ALLtLNS 396 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEE--------YEKALFAINS 396 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTC--------HHHHHHHHHH
T ss_pred HHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhcc--------HHHHHHHHhc
Confidence 6667789999999999999999999999999999999999999 7777766655
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=96.81 E-value=0.054 Score=43.77 Aligned_cols=121 Identities=10% Similarity=0.075 Sum_probs=70.4
Q ss_pred HHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHH
Q 040440 158 VRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEV 237 (355)
Q Consensus 158 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a 237 (355)
..++.|+.++|++.....++.+|.+......+..+++-.|+++.|.+-++-+.+++|+.......+-.+. +
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI----~----- 76 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLV----K----- 76 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHH----H-----
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHH----H-----
Confidence 3456677777887777777777877777777777777788888888877777777776544321111100 0
Q ss_pred HHHHHHHHH-HHHh-----hccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Q 040440 238 EKRIEKAME-RCKK-----EKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPR 290 (355)
Q Consensus 238 ~~~~~~Al~-~~~~-----~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~ 290 (355)
-+...+ +|.. .-..+........-+......|+.++|.+.-.++++..|.
T Consensus 77 ---aE~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~ 132 (273)
T 1zbp_A 77 ---AAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQE 132 (273)
T ss_dssp ---HHHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC
T ss_pred ---HHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcc
Confidence 011111 1111 0111122222333344455668888888888888777653
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.73 E-value=0.067 Score=51.31 Aligned_cols=132 Identities=11% Similarity=-0.001 Sum_probs=75.9
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCc
Q 040440 153 QTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDK 232 (355)
Q Consensus 153 ~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 232 (355)
..++..+...|.+++|++..+ +....+ ......|++++|.+..+. .++...|..+|..+...++
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~--------~~~~~f---~~~l~~~~~~~A~~~~~~-----~~~~~~W~~la~~al~~~~ 696 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISP--------DQDQKF---ELALKVGQLTLARDLLTD-----ESAEMKWRALGDASLQRFN 696 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCC--------CHHHHH---HHHHHHTCHHHHHHHHTT-----CCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhCCChHHheecCC--------Ccchhe---ehhhhcCCHHHHHHHHHh-----hCcHhHHHHHHHHHHHcCC
Confidence 556666677788777776553 222222 334567888888777532 3567888888888888888
Q ss_pred hHHHHHHHHHHHHHHHHhhccC---------CchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 040440 233 KLNEVEKRIEKAMERCKKEKKK---------SDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYT 303 (355)
Q Consensus 233 ~~~~a~~~~~~Al~~~~~~~~~---------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~ 303 (355)
++.|.+.|.+.... ..+.+.+..++.+....|+++.|...|.+. .+ +.....+|.
T Consensus 697 --------~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~~~~~~~~A~~~~~~~-----g~---~~~a~~~~~ 760 (814)
T 3mkq_A 697 --------FKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAETTGKFNLAFNAYWIA-----GD---IQGAKDLLI 760 (814)
T ss_dssp --------HHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-----TC---HHHHHHHHH
T ss_pred --------HHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHHHHcCchHHHHHHHHHc-----CC---HHHHHHHHH
Confidence 66666666552221 122233344455555556665555555432 01 122345566
Q ss_pred HcCCHHHHHHHHH
Q 040440 304 LLRKKDEAEKQFE 316 (355)
Q Consensus 304 ~~g~~~~A~~~~~ 316 (355)
+.+++++|..+-+
T Consensus 761 ~~~~~~~A~~lA~ 773 (814)
T 3mkq_A 761 KSQRFSEAAFLGS 773 (814)
T ss_dssp HTTCHHHHHHHHH
T ss_pred HcCChHHHHHHHH
Confidence 6666666665543
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.71 E-value=0.22 Score=44.22 Aligned_cols=183 Identities=12% Similarity=0.049 Sum_probs=118.1
Q ss_pred CCHHHHHHHHHHHHHc------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHH---HH-HcCC
Q 040440 129 VSYEEKEKEIEQHLAA------NPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQV---QS-YAGE 198 (355)
Q Consensus 129 ~~~~~A~~~~~~~l~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~---~~-~~g~ 198 (355)
+++++|++.+...-+. .+....+...+...+...|+|+...+.+.-..........+-..+... +. ....
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~ 109 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKS 109 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHCT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCc
Confidence 3677788776444321 233567788899999999999998888766554443333332222211 11 1222
Q ss_pred HHHHHHHHHHHHhhC----CC-------CHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhc-------cCCchHHH
Q 040440 199 SEAAIKGFEEILRKD----PL-------RVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEK-------KKSDLRDF 260 (355)
Q Consensus 199 ~~~A~~~~~~~~~~~----p~-------~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~-------~~~~~~~~ 260 (355)
.+. +.....+..- .+ .......++.+|...|+ +.+|.+++..+. ......++
T Consensus 110 ~d~--~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~--------~~eA~~iL~~l~~Et~~~~~~~~kve~ 179 (445)
T 4b4t_P 110 LDL--NTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGK--------IDEAADILCELQVETYGSMEMSEKIQF 179 (445)
T ss_dssp THH--HHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTC--------HHHHHHHHHHHHHHHCSSSCHHHHHHH
T ss_pred hhH--HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccC--------HHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 221 1112222221 11 23445788999999999 888888877721 11233556
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHH---hCCCC----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 040440 261 KLLIAQIKVMESKHSEALRVYEELVK---EEPRD----FRPYLCQGIIYTLLRKKDEAEKQFEKFRRL 321 (355)
Q Consensus 261 ~~~la~~~~~~g~~~~A~~~~~~~l~---~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 321 (355)
+....++|...+++.+|...++++.. ..+.. ...+...|.++...++|.+|-.+|..+...
T Consensus 180 ~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 180 ILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 78889999999999999999998742 22223 245677899999999999999999988764
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.63 E-value=0.074 Score=40.18 Aligned_cols=45 Identities=18% Similarity=0.044 Sum_probs=29.2
Q ss_pred HHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 040440 160 IKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEI 209 (355)
Q Consensus 160 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 209 (355)
++.|+++.|.+..+++ ++...|..+|......|+++-|..+|.++
T Consensus 16 L~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 4566777776666543 34556677777777777777776666654
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=96.49 E-value=0.019 Score=46.31 Aligned_cols=68 Identities=18% Similarity=0.164 Sum_probs=58.8
Q ss_pred HHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHH
Q 040440 268 KVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHPYREYFVDN 335 (355)
Q Consensus 268 ~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~ 335 (355)
..+.|+.++|++..+..++.+|.|......+..+++-.|+|+.|.+.++.+.+++|+.......+...
T Consensus 7 ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~l 74 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHL 74 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHH
Confidence 45679999999999999999999999999999999999999999999999999999875444343333
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.47 E-value=0.11 Score=49.83 Aligned_cols=49 Identities=16% Similarity=0.074 Sum_probs=41.5
Q ss_pred HHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 040440 156 MEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEI 209 (355)
Q Consensus 156 a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 209 (355)
.......|++++|.+..+. .++...|..+|..+.+.|+++.|+++|.++
T Consensus 659 f~~~l~~~~~~~A~~~~~~-----~~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 659 FELALKVGQLTLARDLLTD-----ESAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHHHHHTCHHHHHHHHTT-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred eehhhhcCCHHHHHHHHHh-----hCcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 3456788999999998653 356789999999999999999999999986
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.45 E-value=0.19 Score=37.96 Aligned_cols=108 Identities=8% Similarity=-0.004 Sum_probs=69.4
Q ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHH
Q 040440 182 EFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFK 261 (355)
Q Consensus 182 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~ 261 (355)
+++..+.++ ...|+++.|.+..++. ++...|..+|......|+ ++-|.++|.+.++.
T Consensus 7 D~~~rF~LA---L~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn--------~~lAe~cy~~~~D~------- 63 (177)
T 3mkq_B 7 DPHIRFDLA---LEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGN--------ASLAEMIYQTQHSF------- 63 (177)
T ss_dssp CHHHHHHHH---HHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTC--------HHHHHHHHHHTTCH-------
T ss_pred ChHHHHHHH---HhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCC--------hHHHHHHHHHhCCH-------
Confidence 445555554 4789999999998765 678899999999999999 88888888774332
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHH
Q 040440 262 LLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEK 317 (355)
Q Consensus 262 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 317 (355)
-.+..+|.-.|+.++-.+.-+.+..... +.....++..+|+++++++.|.+
T Consensus 64 ~~L~~Ly~~tg~~e~L~kla~iA~~~g~-----~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 64 DKLSFLYLVTGDVNKLSKMQNIAQTRED-----FGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHTTC-----HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHCcc-----HHHHHHHHHHcCCHHHHHHHHHH
Confidence 2233445556666555555444433321 12223445566666666666644
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.38 E-value=0.021 Score=50.55 Aligned_cols=65 Identities=11% Similarity=0.045 Sum_probs=51.8
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHcC---CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 040440 148 DIEALQTLMEVRIKSQKLVEAVDVIDRLIELE---PNEFEWQLLKAQVQSYAGESEAAIKGFEEILRK 212 (355)
Q Consensus 148 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 212 (355)
-..++..+|..|...|++++|.+.|.++.... ....+.++....++...+++..+...++++...
T Consensus 130 ~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~ 197 (429)
T 4b4t_R 130 QAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSM 197 (429)
T ss_dssp CSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 34578889999999999999999999987652 234567777888888889999998888887655
|
| >3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=96.37 E-value=0.19 Score=37.30 Aligned_cols=89 Identities=15% Similarity=0.145 Sum_probs=66.0
Q ss_pred hccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHc-----------------CCCchH-HHH
Q 040440 126 REDVSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIEL-----------------EPNEFE-WQL 187 (355)
Q Consensus 126 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-----------------~~~~~~-~~~ 187 (355)
|-.++|.+++-.+. .-+...+.+....||...++|..|+..+++.++- +|.+.+ .+.
T Consensus 44 yyngEY~R~Lf~L~-----~lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~ 118 (242)
T 3kae_A 44 YLNGEYTRALFHLH-----KLNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFES 118 (242)
T ss_dssp HHTTCHHHHHHHHH-----TCCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHH
T ss_pred hhcchHhHHHHHHH-----hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHH
Confidence 55667777766553 2356777888888999999999999999998832 233333 466
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q 040440 188 LKAQVQSYAGESEAAIKGFEEILRKDPLRVEA 219 (355)
Q Consensus 188 ~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 219 (355)
.+|.++.+.|+.++|+.+|.......+-...+
T Consensus 119 l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~v 150 (242)
T 3kae_A 119 LLGDLCTLSGYREEGIGHYVRSFGKSFLFSPV 150 (242)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHH
T ss_pred HHHHHHHHhcCHHHhhhHhhhhcCCccccchH
Confidence 78888899999999999998888887755443
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=96.32 E-value=0.085 Score=45.92 Aligned_cols=111 Identities=14% Similarity=0.054 Sum_probs=76.8
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHH
Q 040440 191 QVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVM 270 (355)
Q Consensus 191 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~ 270 (355)
......|+.+.|...+++++.+.....-.- +. ...........+++. ...+...++..+..
T Consensus 123 ~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~-----~~--~~~w~~~~r~~l~~~------------~~~a~~~~~~~~l~ 183 (388)
T 2ff4_A 123 VHAAAAGRFEQASRHLSAALREWRGPVLDD-----LR--DFQFVEPFATALVED------------KVLAHTAKAEAEIA 183 (388)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCCSSTTGG-----GT--TSTTHHHHHHHHHHH------------HHHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHhcCCCCCCC-----CC--chhHHHHHHHHHHHH------------HHHHHHHHHHHHHH
Confidence 334456899999999999998864321100 00 000000000011111 12234456778889
Q ss_pred ccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 040440 271 ESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRR 320 (355)
Q Consensus 271 ~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 320 (355)
.|++++|+..++.++..+|-+...|..+..++...|+..+|+..|+++.+
T Consensus 184 ~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 184 CGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998754
|
| >3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=96.29 E-value=0.12 Score=38.40 Aligned_cols=119 Identities=14% Similarity=0.017 Sum_probs=81.8
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHccC
Q 040440 194 SYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVMESK 273 (355)
Q Consensus 194 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 273 (355)
.+-.+|+.++-+-.-. .|..++....++..+.-.|+ |.+++-++... +.....+.-+.||.+.++
T Consensus 13 ~kY~dYdt~~fLsa~L---~~~~~eY~lL~~I~LyyngE--------Y~R~Lf~L~~l----NT~Ts~YYk~LCy~klKd 77 (242)
T 3kae_A 13 IRYRDYETAIFLAACL---LPCKPEYRMLMSIVLYLNGE--------YTRALFHLHKL----NTCTSKYYESLCYKKKKD 77 (242)
T ss_dssp HHTTCHHHHHHHHHHH---C----CTHHHHHHHHHHTTC--------HHHHHHHHHTC----CBHHHHHHHHHHHHHTTC
T ss_pred hhcccccHHHHHHHHH---ccCChHHHhhhhhhhhhcch--------HhHHHHHHHhc----chHHHHHHHHHHHHHHHH
Confidence 3455666664332222 33444455566777777888 88888887653 334556667889999999
Q ss_pred HHHHHHHHHHHHH--h--C-------------CCChH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChh
Q 040440 274 HSEALRVYEELVK--E--E-------------PRDFR-PYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHP 327 (355)
Q Consensus 274 ~~~A~~~~~~~l~--~--~-------------~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 327 (355)
|.+|+..++..++ . + |.|.+ .+..+|.++.+.|+.+||+.++.......|--++
T Consensus 78 YkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~ 149 (242)
T 3kae_A 78 YKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSP 149 (242)
T ss_dssp HHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHH
T ss_pred HHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccch
Confidence 9999999999983 2 2 22322 4667899999999999999999999888775433
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=95.91 E-value=0.66 Score=40.27 Aligned_cols=90 Identities=16% Similarity=0.154 Sum_probs=67.5
Q ss_pred HHccCHHHHHHHHHHHHHcCCCc--------h--------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q 040440 160 IKSQKLVEAVDVIDRLIELEPNE--------F--------------EWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRV 217 (355)
Q Consensus 160 ~~~g~~~~A~~~~~~~~~~~~~~--------~--------------~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~ 217 (355)
...|+.+.|...+++++.+.... . .+...++..+...|++.+++..++.++..+|-+.
T Consensus 126 ~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E 205 (388)
T 2ff4_A 126 AAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEHPYRE 205 (388)
T ss_dssp HHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH
T ss_pred HhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence 34567777777777777763211 0 1233456778889999999999999999999999
Q ss_pred HHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh
Q 040440 218 EAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK 250 (355)
Q Consensus 218 ~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~ 250 (355)
..+..+..++...|+ ..+|+..|++..+.+.+
T Consensus 206 ~~~~~lm~al~~~Gr-~~~Al~~y~~~r~~L~~ 237 (388)
T 2ff4_A 206 PLWTQLITAYYLSDR-QSDALGAYRRVKTTLAD 237 (388)
T ss_dssp HHHHHHHHHHHTTTC-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHH
Confidence 999999999999999 56666666666665554
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=95.87 E-value=0.19 Score=50.39 Aligned_cols=173 Identities=12% Similarity=-0.076 Sum_probs=108.4
Q ss_pred HHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHc---C--------------------CCchHHHHHHHHHHHHcC
Q 040440 141 HLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIEL---E--------------------PNEFEWQLLKAQVQSYAG 197 (355)
Q Consensus 141 ~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~--------------------~~~~~~~~~la~~~~~~g 197 (355)
.+...|.++...+.+|.++...|++++|..+|+++... + ......|..+..++.+.|
T Consensus 834 l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~ 913 (1139)
T 4fhn_B 834 LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEES 913 (1139)
T ss_dssp HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTS
T ss_pred HhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcC
Confidence 44556778888899999999999999999999886321 0 011234667778888999
Q ss_pred CHHHHHHHHHHHHhhCC-CCHH----HHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHcc
Q 040440 198 ESEAAIKGFEEILRKDP-LRVE----AYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVMES 272 (355)
Q Consensus 198 ~~~~A~~~~~~~~~~~p-~~~~----~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~~g 272 (355)
.++.+++..+.+++..+ ++.. .|..+-..+...|+ |++|...+............+..+....+..|
T Consensus 914 ~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~--------ye~Ay~aL~~~pd~~~r~~cLr~LV~~lce~~ 985 (1139)
T 4fhn_B 914 AYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGK--------FDAAHVALMVLSTTPLKKSCLLDFVNQLTKQG 985 (1139)
T ss_dssp CCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCC--------SGGGGHHHHHHHHSSSCHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCC--------HHHHHHHHHhCCCHHHHHHHHHHHHHHHHhCC
Confidence 99999999999998754 3332 46666777777787 77777776654433344455555544444444
Q ss_pred CH------------HHHHHHHHHHH-Hh-CCCC-hHHHHHHHHHHHHcCCHHHHH-HHHHHHHHh
Q 040440 273 KH------------SEALRVYEELV-KE-EPRD-FRPYLCQGIIYTLLRKKDEAE-KQFEKFRRL 321 (355)
Q Consensus 273 ~~------------~~A~~~~~~~l-~~-~~~~-~~~~~~l~~~~~~~g~~~~A~-~~~~~~l~~ 321 (355)
.. ++-.+++..-. .. ++.+ +..|..|-..+...|++..|. -.|+.+.++
T Consensus 986 ~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~RL 1050 (1139)
T 4fhn_B 986 KINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLSRY 1050 (1139)
T ss_dssp CHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred ChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHHHh
Confidence 43 33333332211 11 2222 334444555666777776554 456666554
|
| >4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.83 E-value=0.021 Score=50.94 Aligned_cols=69 Identities=16% Similarity=0.080 Sum_probs=57.6
Q ss_pred CchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 040440 255 SDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRD-------FRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRN 325 (355)
Q Consensus 255 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~ 325 (355)
.....++..+-+.|...+.|++|..+..+.. .|.. ...++.+|.++...++|.+|.+++..++...|.+
T Consensus 228 ~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~ 303 (523)
T 4b4t_S 228 ETKAMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHN 303 (523)
T ss_dssp CHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCS
T ss_pred chhHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc
Confidence 3445668888999999999999999999984 4432 3457788999999999999999999999988765
|
| >1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.71 E-value=0.098 Score=46.90 Aligned_cols=78 Identities=15% Similarity=0.005 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHh
Q 040440 151 ALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYD 228 (355)
Q Consensus 151 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 228 (355)
.+..+|++....+.++.|..+|.++..+.|++...+..+|.+....|+.-+|+-+|-+++......+.+..++...+.
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~ 231 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALS 231 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Confidence 566788888888999999999999999999999999999999999999999999999999877667777777766654
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=95.50 E-value=0.4 Score=48.06 Aligned_cols=140 Identities=15% Similarity=-0.009 Sum_probs=73.8
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhccCc
Q 040440 154 TLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKD-PLRVEAYHGLVMAYDGSDK 232 (355)
Q Consensus 154 ~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~ 232 (355)
.+...+...|.++-+.++ ....+.++...+.+|.++...|++++|..+|+++-.-. .++.. ...
T Consensus 817 ~l~~~l~~~~~~~~~~~l----~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l-----------~~~ 881 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQL----IGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQ-----------FAV 881 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHH----HHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCS-----------CSS
T ss_pred HHHHHHHHhhhHHHHHHH----hhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchh-----------hhh
Confidence 344455666666665543 23356666667788888888888888888887764321 10000 000
Q ss_pred hHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-h----HHHHHHHHHHHHcCC
Q 040440 233 KLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRD-F----RPYLCQGIIYTLLRK 307 (355)
Q Consensus 233 ~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~-~----~~~~~l~~~~~~~g~ 307 (355)
..+................+|..+..++.+.|.++.+++..+.+++..+.+ . ..|..+-..+...|+
T Consensus 882 --------~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ 953 (1139)
T 4fhn_B 882 --------LREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGK 953 (1139)
T ss_dssp --------HHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCC
T ss_pred --------hcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCC
Confidence 000000011111112223445555666666666677776666666654322 1 145556666666677
Q ss_pred HHHHHHHHH
Q 040440 308 KDEAEKQFE 316 (355)
Q Consensus 308 ~~~A~~~~~ 316 (355)
|++|...+.
T Consensus 954 ye~Ay~aL~ 962 (1139)
T 4fhn_B 954 FDAAHVALM 962 (1139)
T ss_dssp SGGGGHHHH
T ss_pred HHHHHHHHH
Confidence 776655553
|
| >1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.26 E-value=0.15 Score=45.78 Aligned_cols=69 Identities=12% Similarity=0.029 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhH
Q 040440 260 FKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHPY 328 (355)
Q Consensus 260 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 328 (355)
.+..+|++......++.|..+|.++....|++...++.+|.+....|+.-+|.-+|-+++......+..
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a 222 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAA 222 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhH
Confidence 567789999999999999999999999999999999999999999999999999999988754334333
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=95.18 E-value=1.2 Score=37.20 Aligned_cols=155 Identities=13% Similarity=0.012 Sum_probs=93.6
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCCHHHHHHHHHHH
Q 040440 153 QTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRK-----DPLRVEAYHGLVMAY 227 (355)
Q Consensus 153 ~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-----~p~~~~~~~~l~~~~ 227 (355)
..+..=|.+.++|++|++++.... ..+.+.|++..|.++..-+++. .+-+.+....+..++
T Consensus 37 Rtl~~Ry~~~~~~~eAidlL~~ga--------------~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~ 102 (312)
T 2wpv_A 37 RTIANRYVRSKSYEHAIELISQGA--------------LSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLI 102 (312)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH--------------HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHH--------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 344555677888888888876543 2334445555444433222222 223444444555555
Q ss_pred hccCchHHHHHHHHHHHHHHHHhh-ccCCchHHHHHHHHHHHHHccCHHHHHHHHHHH---------------HHh----
Q 040440 228 DGSDKKLNEVEKRIEKAMERCKKE-KKKSDLRDFKLLIAQIKVMESKHSEALRVYEEL---------------VKE---- 287 (355)
Q Consensus 228 ~~~~~~~~~a~~~~~~Al~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~---------------l~~---- 287 (355)
.........-....++|+....+. .....++.++..+|..|.+.|++.+|..+|-.. .+.
T Consensus 103 ~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~ 182 (312)
T 2wpv_A 103 AELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDI 182 (312)
T ss_dssp TTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCC
Confidence 443322222345577888888774 335678899999999999999999999987411 111
Q ss_pred CCCChHHHHHHH-HHHHHcCCHHHHHHHHHHHHHh
Q 040440 288 EPRDFRPYLCQG-IIYTLLRKKDEAEKQFEKFRRL 321 (355)
Q Consensus 288 ~~~~~~~~~~l~-~~~~~~g~~~~A~~~~~~~l~~ 321 (355)
.|.....+...+ ..|...|+...|...|+...+.
T Consensus 183 ~~~e~dlf~~RaVL~yL~l~n~~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 183 EDSTVAEFFSRLVFNYLFISNISFAHESKDIFLER 217 (312)
T ss_dssp CHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 122234444443 4566789999999988877643
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=95.16 E-value=1.2 Score=37.37 Aligned_cols=154 Identities=12% Similarity=0.114 Sum_probs=92.5
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCCHHHHHHHHHHH
Q 040440 153 QTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRK-----DPLRVEAYHGLVMAY 227 (355)
Q Consensus 153 ~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-----~p~~~~~~~~l~~~~ 227 (355)
..++.=|.+.++|++|++++-... ..+.+.|++..|.++..-+++. .+-+.+....+..++
T Consensus 39 RTi~~Ry~~~k~y~eAidLL~~GA--------------~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~ 104 (336)
T 3lpz_A 39 RLVAARYSKQGNWAAAVDILASVS--------------QTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCL 104 (336)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH--------------HHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHhhcCHHHHHHHHHHHH--------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 345556778899999988766543 2333444444444433222221 122334444455555
Q ss_pred hccCchHHHHHHHHHHHHHHHHhh-ccCCchHHHHHHHHHHHHHccCHHHHHHHHHH-------HH--------H-hCCC
Q 040440 228 DGSDKKLNEVEKRIEKAMERCKKE-KKKSDLRDFKLLIAQIKVMESKHSEALRVYEE-------LV--------K-EEPR 290 (355)
Q Consensus 228 ~~~~~~~~~a~~~~~~Al~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~-------~l--------~-~~~~ 290 (355)
.........-....++|+.+..+. .....++.++..+|..|.+.+++.+|...|-- .+ . ..|.
T Consensus 105 ~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~ 184 (336)
T 3lpz_A 105 RLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESH 184 (336)
T ss_dssp TTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGG
T ss_pred HhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCc
Confidence 444332223345678888888773 34567889999999999999999999888721 11 1 1223
Q ss_pred ChHHHHHHH-HHHHHcCCHHHHHHHHHHHHH
Q 040440 291 DFRPYLCQG-IIYTLLRKKDEAEKQFEKFRR 320 (355)
Q Consensus 291 ~~~~~~~l~-~~~~~~g~~~~A~~~~~~~l~ 320 (355)
....+...+ ..|...|+...|...++...+
T Consensus 185 e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 185 TAPLYCARAVLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 344444443 456788999999887766554
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=94.55 E-value=2.9 Score=38.68 Aligned_cols=123 Identities=10% Similarity=0.006 Sum_probs=71.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH----HHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHH
Q 040440 190 AQVQSYAGESEAAIKGFEEILRKDPLRVEAY----HGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIA 265 (355)
Q Consensus 190 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~----~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la 265 (355)
+.......+.+.|...+........-+.... ..++.-....+. . .++...+........+......++
T Consensus 221 ~~~rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~-~-------~~~~~~~~~~~~~~~~~~~~e~~~ 292 (618)
T 1qsa_A 221 AFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDV-T-------DEQAKWRDDAIMRSQSTSLIERRV 292 (618)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTC-C-------HHHHHHHHHHHHTCCCHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCC-C-------hHHHHHHHhccccCCChHHHHHHH
Confidence 3333444577888888877765443333222 222222233331 1 222222222111122222233334
Q ss_pred HHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 040440 266 QIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRR 320 (355)
Q Consensus 266 ~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 320 (355)
...+..|+++.|...|+.+-..........+.+|..+...|+.++|..+|+++..
T Consensus 293 r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 293 RMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 4455679999999999876543334567789999999999999999999998865
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.54 E-value=0.11 Score=45.79 Aligned_cols=101 Identities=9% Similarity=0.036 Sum_probs=71.4
Q ss_pred cccchhhhhhhhhhhccCCHHHHHHHHHHHHHcC---CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcC--CCchH--
Q 040440 112 VESTNESTKDTTSAREDVSYEEKEKEIEQHLAAN---PNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELE--PNEFE-- 184 (355)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~---p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~~~~-- 184 (355)
+..+...++.. .+..+++++|.+.|.++.... ....+.+.....++...++|..+..+++++.... ..+..
T Consensus 130 ~~~~~~~la~~--~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~ 207 (429)
T 4b4t_R 130 QAQAWINLGEY--YAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERR 207 (429)
T ss_dssp CSSCCHHHHHH--HHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHH
T ss_pred HHHHHHHHHHH--HHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHH
Confidence 33344455554 234449999999999988743 2346788888899999999999999999986552 22222
Q ss_pred --HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 040440 185 --WQLLKAQVQSYAGESEAAIKGFEEILRKDP 214 (355)
Q Consensus 185 --~~~~la~~~~~~g~~~~A~~~~~~~~~~~p 214 (355)
.....|.++...++|.+|-..|-+++....
T Consensus 208 ~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~~ 239 (429)
T 4b4t_R 208 NRYKTYYGIHCLAVRNFKEAAKLLVDSLATFT 239 (429)
T ss_dssp HHHHHHHHHGGGGTSCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHhChHHHHHHHHHHHhccCC
Confidence 334456677788999999999988876543
|
| >4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.33 E-value=0.062 Score=47.95 Aligned_cols=126 Identities=12% Similarity=0.121 Sum_probs=56.1
Q ss_pred HHHHccCHHHHHHHHHHHHH--c---------CCCchHHHHHHHHHHHHcCCHHHHH----------HHHHHHHhh----
Q 040440 158 VRIKSQKLVEAVDVIDRLIE--L---------EPNEFEWQLLKAQVQSYAGESEAAI----------KGFEEILRK---- 212 (355)
Q Consensus 158 ~~~~~g~~~~A~~~~~~~~~--~---------~~~~~~~~~~la~~~~~~g~~~~A~----------~~~~~~~~~---- 212 (355)
.++..+++++|.++-...+. . +.-....|+.++.++...|+..+.. ..+-.+++.
T Consensus 145 ~L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr 224 (523)
T 4b4t_S 145 FLWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLK 224 (523)
T ss_dssp ----------------------------------------------------------CHHHHHHHHTHHHHHHHHCCSC
T ss_pred HHhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhcc
Confidence 44577889988888776651 1 2223346777777777777665532 222233322
Q ss_pred -CCC-CHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhcc------CCchHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 040440 213 -DPL-RVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKK------KSDLRDFKLLIAQIKVMESKHSEALRVYEEL 284 (355)
Q Consensus 213 -~p~-~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 284 (355)
+.. ....+..+.+.|...+. |+.|..+..+..- +.....+++.+|.++..+++|.+|.+++..+
T Consensus 225 ~D~~~qa~l~nllLRnYL~~~~--------y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A 296 (523)
T 4b4t_S 225 HDNETKAMLINLILRDFLNNGE--------VDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAA 296 (523)
T ss_dssp SSSCHHHHHHHHHHHHHHHSSC--------STTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cCcchhHHHHHHHHHHHHccCc--------HHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 222 24557788888998888 8888888877321 1123556888999999999999999999999
Q ss_pred HHhCCCC
Q 040440 285 VKEEPRD 291 (355)
Q Consensus 285 l~~~~~~ 291 (355)
+...|.+
T Consensus 297 ~rkap~~ 303 (523)
T 4b4t_S 297 IRKAPHN 303 (523)
T ss_dssp TSSCSCS
T ss_pred HHhCCcc
Confidence 9887754
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.01 E-value=7.8 Score=34.18 Aligned_cols=155 Identities=13% Similarity=0.001 Sum_probs=97.8
Q ss_pred ccCHHHHHHHHHHHHHc------CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHH
Q 040440 162 SQKLVEAVDVIDRLIEL------EPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLN 235 (355)
Q Consensus 162 ~g~~~~A~~~~~~~~~~------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~ 235 (355)
.|++++|++.+....+. .+....+...+..++...|+++...+.+.-..+.......+...+....... .+
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~---l~ 105 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEY---LK 105 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHH---HH
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH---Hh
Confidence 36788888877544332 1233456777888999999999988887766665555444443333322210 00
Q ss_pred HHH-HHHHHHHHHHHhh---ccCC-----chHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-C-C----ChHHHHHHHH
Q 040440 236 EVE-KRIEKAMERCKKE---KKKS-----DLRDFKLLIAQIKVMESKHSEALRVYEELVKEE-P-R----DFRPYLCQGI 300 (355)
Q Consensus 236 ~a~-~~~~~Al~~~~~~---~~~~-----~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-~-~----~~~~~~~l~~ 300 (355)
..- ...+.-+...+.. .... ....+...|+.+|...|++.+|..++....... . . -.+.+.....
T Consensus 106 ~~~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~r 185 (445)
T 4b4t_P 106 SSKSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQME 185 (445)
T ss_dssp HHCTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHH
T ss_pred cCCchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 000 0011122222221 1111 134567789999999999999999999986421 1 1 1467788899
Q ss_pred HHHHcCCHHHHHHHHHHHH
Q 040440 301 IYTLLRKKDEAEKQFEKFR 319 (355)
Q Consensus 301 ~~~~~g~~~~A~~~~~~~l 319 (355)
+|...+++.+|...++++.
T Consensus 186 l~l~~~d~~~a~~~~~ki~ 204 (445)
T 4b4t_P 186 LSILKGDYSQATVLSRKIL 204 (445)
T ss_dssp HHHHHTCHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHH
Confidence 9999999999999999874
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=89.85 E-value=12 Score=34.55 Aligned_cols=183 Identities=8% Similarity=-0.087 Sum_probs=99.5
Q ss_pred CHHHHHHHHHHHHHcCCCCHHH----HHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHH
Q 040440 130 SYEEKEKEIEQHLAANPNDIEA----LQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKG 205 (355)
Q Consensus 130 ~~~~A~~~~~~~l~~~p~~~~~----~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 205 (355)
+.+.|...+........-+... +..++......+...++...+.+......++.... .++....+.|+++.|...
T Consensus 229 d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e-~~~r~Alr~~d~~~a~~~ 307 (618)
T 1qsa_A 229 DAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIE-RRVRMALGTGDRRGLNTW 307 (618)
T ss_dssp CHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHH-HHHHHHHHHTCHHHHHHH
T ss_pred CHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCCChHHHH-HHHHHHHHCCCHHHHHHH
Confidence 6677777776665433222221 22222222333435566666666554433332222 223334456788888777
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHH--------HHHhhccC---------C-ch----HHHHHH
Q 040440 206 FEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAME--------RCKKEKKK---------S-DL----RDFKLL 263 (355)
Q Consensus 206 ~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~--------~~~~~~~~---------~-~~----~~~~~~ 263 (355)
|+.+-..........+.+|..+...|+ .+++...|.++.. ..+++... + .. ..-...
T Consensus 308 ~~~l~~~~~~~~r~~YW~~ra~~~~g~-~~~a~~~~~~~a~~~~fYg~lAa~~Lg~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (618)
T 1qsa_A 308 LARLPMEAKEKDEWRYWQADLLLERGR-EAEAKEILHQLMQQRGFYPMVAAQRIGEEYELKIDKAPQNVDSALTQGPEMA 386 (618)
T ss_dssp HHHSCTTGGGSHHHHHHHHHHHHHTTC-HHHHHHHHHHHHTSCSHHHHHHHHHTTCCCCCCCCCCCSCCCCHHHHSHHHH
T ss_pred HHHccccccccHhHHHHHHHHHHHcCC-HHHHHHHHHHHhcCCChHHHHHHHHcCCCCCCCCCCCChhHHhhhccChHHH
Confidence 766555333456667777777777776 4444444444332 00111100 0 00 011234
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHH
Q 040440 264 IAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFE 316 (355)
Q Consensus 264 la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 316 (355)
.+..+...|....|...+..++... +..-...++.+....|.+..++....
T Consensus 387 r~~~L~~~g~~~~a~~ew~~~~~~~--~~~~~~~la~~a~~~~~~~~~v~~~~ 437 (618)
T 1qsa_A 387 RVRELMYWNLDNTARSEWANLVKSK--SKTEQAQLARYAFNNQWWDLSVQATI 437 (618)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTC--CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHCCChhhHHHHHHHHHhcC--CHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 5667778899999998888877542 34455677788888888887775544
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=89.33 E-value=8.3 Score=37.43 Aligned_cols=150 Identities=13% Similarity=0.064 Sum_probs=79.5
Q ss_pred HHHccCHHHHHHHHHHHHHcC-CCch----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC---C---CH----HHHHHH
Q 040440 159 RIKSQKLVEAVDVIDRLIELE-PNEF----EWQLLKAQVQSYAGESEAAIKGFEEILRKDP---L---RV----EAYHGL 223 (355)
Q Consensus 159 ~~~~g~~~~A~~~~~~~~~~~-~~~~----~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p---~---~~----~~~~~l 223 (355)
.+..|+.++++..+.+.+... .++. .+.+.+|.++...+ ++++.++...+.... . +. .+...+
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~--~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGL 461 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFG--RDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGI 461 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTT--HHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCc--HHHHHHHHHHHcCccccccccccHHHHHHHHHHH
Confidence 445678888888887766421 1221 24555665554444 578888887776432 0 11 245577
Q ss_pred HHHHhccCchHHHHHHHHHHHHHHHHh-hccCCch--HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 040440 224 VMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDL--RDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGI 300 (355)
Q Consensus 224 ~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~ 300 (355)
|.++...++ +++++.+.. +..+... ...-+.+|.++...|+-+.....+..+.+...++..-...+|.
T Consensus 462 Gla~~GS~~---------eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgL 532 (963)
T 4ady_A 462 GLAAMGSAN---------IEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGL 532 (963)
T ss_dssp HHHSTTCCC---------HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHH
T ss_pred HHHhcCCCC---------HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHH
Confidence 777777665 344444444 1111111 1335566777777777666555555555433222222233444
Q ss_pred HHHHcCCHHHHHHHHHHHH
Q 040440 301 IYTLLRKKDEAEKQFEKFR 319 (355)
Q Consensus 301 ~~~~~g~~~~A~~~~~~~l 319 (355)
.+...|+.+.+....+...
T Consensus 533 Gll~~g~~e~~~~li~~L~ 551 (963)
T 4ady_A 533 ALINYGRQELADDLITKML 551 (963)
T ss_dssp HHHTTTCGGGGHHHHHHHH
T ss_pred HhhhCCChHHHHHHHHHHH
Confidence 4445666655555555443
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=87.53 E-value=6.2 Score=28.30 Aligned_cols=57 Identities=11% Similarity=0.074 Sum_probs=48.0
Q ss_pred HHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 040440 266 QIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLV 322 (355)
Q Consensus 266 ~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 322 (355)
.....+|+-++-.+++...+...+-++.....+|.+|.+.|+..+|.+.+.++-+..
T Consensus 99 d~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 99 DILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 345678999999999988777777789999999999999999999999999998754
|
| >3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=87.43 E-value=8.3 Score=29.63 Aligned_cols=48 Identities=10% Similarity=-0.115 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHhCC--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 040440 274 HSEALRVYEELVKEEP--RDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRL 321 (355)
Q Consensus 274 ~~~A~~~~~~~l~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 321 (355)
..++..+|.-+....- .....|...|..+...|++.+|.++|+..++.
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~ 144 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAEN 144 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 4444444444443322 23344444455555555555555555555543
|
| >4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B | Back alignment and structure |
|---|
Probab=83.98 E-value=11 Score=37.07 Aligned_cols=27 Identities=19% Similarity=0.044 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH
Q 040440 260 FKLLIAQIKVMESKHSEALRVYEELVK 286 (355)
Q Consensus 260 ~~~~la~~~~~~g~~~~A~~~~~~~l~ 286 (355)
+|..++.++...+-++-+++..+.+++
T Consensus 899 YY~hV~~LFE~~~a~~~vi~fA~lAI~ 925 (950)
T 4gq2_M 899 YYLHLSKKLFEESAYIDALEFSLLADA 925 (950)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 344444444555555555555555554
|
| >4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A | Back alignment and structure |
|---|
Probab=83.98 E-value=10 Score=27.62 Aligned_cols=81 Identities=12% Similarity=0.085 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHhhc---cCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCCHHHHH
Q 040440 238 EKRIEKAMERCKKEK---KKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEE--PRDFRPYLCQGIIYTLLRKKDEAE 312 (355)
Q Consensus 238 ~~~~~~Al~~~~~~~---~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~--~~~~~~~~~l~~~~~~~g~~~~A~ 312 (355)
...+++++..+.... +++....+|..++.. .+++..+|.-+.... -.....|...|..+...|++.+|.
T Consensus 48 ~~lLErc~~~f~~~~~YknD~RyLklWl~ya~~------~~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~ 121 (152)
T 4a1g_A 48 ITLLEHLMKEFLDKKKYHNDPRFISYCLKFAEY------NSDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHAS 121 (152)
T ss_dssp HHHHHHHHHHHTTCGGGTTCHHHHHHHHHHHTT------BSCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhcccccccCCHHHHHHHHHHHHh------cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 344777777776633 333334445555433 234788888877644 345677888999999999999999
Q ss_pred HHHHHHHHhCCC
Q 040440 313 KQFEKFRRLVPR 324 (355)
Q Consensus 313 ~~~~~~l~~~p~ 324 (355)
++|+..++....
T Consensus 122 ~Vy~~Gi~~~A~ 133 (152)
T 4a1g_A 122 AVLQRGIQNQAE 133 (152)
T ss_dssp HHHHHHHHTTCB
T ss_pred HHHHHHHHcCCc
Confidence 999999987643
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=82.45 E-value=19 Score=34.96 Aligned_cols=101 Identities=14% Similarity=0.060 Sum_probs=58.7
Q ss_pred CHHHHHHHHHHHHHcCCCCH--HHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHH
Q 040440 130 SYEEKEKEIEQHLAANPNDI--EALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFE 207 (355)
Q Consensus 130 ~~~~A~~~~~~~l~~~p~~~--~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 207 (355)
.-+++.+.+..++..+.... .+-..+|.++.-.|+-+....++..+.+...++......+|..+...|+.+.+..+.+
T Consensus 469 ~~eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~~~~li~ 548 (963)
T 4ady_A 469 ANIEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQELADDLIT 548 (963)
T ss_dssp CCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGGGHHHHH
T ss_pred CCHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHHHHHHHH
Confidence 33566777777776443211 3445677777788887776666666665433332223344455556788877766666
Q ss_pred HHHhhCCCCHHHH----HHHHHHHhccCc
Q 040440 208 EILRKDPLRVEAY----HGLVMAYDGSDK 232 (355)
Q Consensus 208 ~~~~~~p~~~~~~----~~l~~~~~~~~~ 232 (355)
.+... .++... +.+|..|...|+
T Consensus 549 ~L~~~--~dp~vRygaa~alglAyaGTGn 575 (963)
T 4ady_A 549 KMLAS--DESLLRYGGAFTIALAYAGTGN 575 (963)
T ss_dssp HHHHC--SCHHHHHHHHHHHHHHTTTSCC
T ss_pred HHHhC--CCHHHHHHHHHHHHHHhcCCCC
Confidence 55542 233332 355667778887
|
| >4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=82.13 E-value=3.6 Score=32.18 Aligned_cols=79 Identities=9% Similarity=0.089 Sum_probs=53.4
Q ss_pred HHHHHHHHHHhhc---cCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC--CChHHHHHHHHHHHHcCCHHHHHHH
Q 040440 240 RIEKAMERCKKEK---KKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEP--RDFRPYLCQGIIYTLLRKKDEAEKQ 314 (355)
Q Consensus 240 ~~~~Al~~~~~~~---~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~ 314 (355)
.+++++..|.... +++....+|..++.. .+++..+|..+....- .....|...|..+...|++.+|..+
T Consensus 99 lLErc~~~F~~~~rYknD~RyLklWl~Ya~~------~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~V 172 (223)
T 4aez_C 99 LLERCTREFVRNPLYKDDVRYLRIWMQYVNY------IDEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEV 172 (223)
T ss_dssp HHHHHHHHTTTCGGGTTCHHHHHHHHHHHTT------CSCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHhcccccccCCHHHHHHHHHHHHc------cCCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 3666666666533 333334445555542 2466677777776543 4567788889999999999999999
Q ss_pred HHHHHHhCCC
Q 040440 315 FEKFRRLVPR 324 (355)
Q Consensus 315 ~~~~l~~~p~ 324 (355)
|+..++..-.
T Consensus 173 y~~Gi~~~A~ 182 (223)
T 4aez_C 173 YQKGKRMKAK 182 (223)
T ss_dssp HHHHHHHTCB
T ss_pred HHHHHHcCCc
Confidence 9999987643
|
| >3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=81.66 E-value=16 Score=28.08 Aligned_cols=121 Identities=9% Similarity=-0.066 Sum_probs=69.3
Q ss_pred CHHHHHHHHHHHHHc---CCCch-HHHHHHH----HHHHHcCCH-H-HHH-HHHHHHHhhCCCCHHH-----HHHHHHHH
Q 040440 164 KLVEAVDVIDRLIEL---EPNEF-EWQLLKA----QVQSYAGES-E-AAI-KGFEEILRKDPLRVEA-----YHGLVMAY 227 (355)
Q Consensus 164 ~~~~A~~~~~~~~~~---~~~~~-~~~~~la----~~~~~~g~~-~-~A~-~~~~~~~~~~p~~~~~-----~~~l~~~~ 227 (355)
+..+-...|++.+.. ..+++ +.|.... ..|-..|.. + .-. .++++++....++... +..+=..|
T Consensus 7 ~l~~~r~~fE~~l~~~l~~~dDPL~~w~~YIkW~ee~yP~g~~~~~s~L~~~lLErc~~~F~~~~rYkND~RYLklWl~Y 86 (202)
T 3esl_A 7 QLNQTKIAYEQRLLNDLEDMDDPLDLFLDYMIWISTSYIEVDSESGQEVLRSTMERCLIYIQDMETYRNDPRFLKIWIWY 86 (202)
T ss_dssp HHHHHHHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCGGGTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccccCCCchHHHHHHHHHHHHhCCCCCCcchhchHHHHHHHHHHHhcccccccCCHHHHHHHHHH
Confidence 345566677777665 33343 2333332 222222321 1 233 6788888765544322 32322223
Q ss_pred hccCchHHHHHHHHHHHHHHHHh---hccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Q 040440 228 DGSDKKLNEVEKRIEKAMERCKK---EKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEP 289 (355)
Q Consensus 228 ~~~~~~~~~a~~~~~~Al~~~~~---~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~ 289 (355)
...-. .+......++|.- .........+|...|..+...|++++|.++|+..++..-
T Consensus 87 a~~~~-----~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A 146 (202)
T 3esl_A 87 INLFL-----SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNC 146 (202)
T ss_dssp HHHHS-----TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHhhc-----ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 22200 0001245555554 455667788899999999999999999999999999754
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=81.32 E-value=10 Score=27.19 Aligned_cols=52 Identities=12% Similarity=0.112 Sum_probs=26.6
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHH
Q 040440 192 VQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKA 244 (355)
Q Consensus 192 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A 244 (355)
....+|+-++-.+.+...+...+-+++....++.+|.+.|+ ..++.....+|
T Consensus 100 ~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~-~r~a~eLl~~A 151 (172)
T 1wy6_A 100 ILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGD-ERDATTLLIEA 151 (172)
T ss_dssp HHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTC-HHHHHHHHHHH
T ss_pred HHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcc-hhhHHHHHHHH
Confidence 34455555555555555444444455556666666666555 44444444444
|
| >4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B | Back alignment and structure |
|---|
Probab=81.00 E-value=13 Score=36.36 Aligned_cols=81 Identities=12% Similarity=-0.105 Sum_probs=59.9
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHc-CC--------------------C--chHHHHHHHHHHH
Q 040440 138 IEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIEL-EP--------------------N--EFEWQLLKAQVQS 194 (355)
Q Consensus 138 ~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~~--------------------~--~~~~~~~la~~~~ 194 (355)
..+.+..-|.++..-+.+|.+|...|++++|..+|+++-.- .. + ....|.....++.
T Consensus 829 a~eL~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~e~~~~~~~YY~hV~~LFE 908 (950)
T 4gq2_M 829 CMQLIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLF 908 (950)
T ss_dssp HHHHGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHTTTCSHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCcccccchhHHHHHHHHHHHH
Confidence 34456677788888899999999999999999999986421 00 0 1124667778888
Q ss_pred HcCCHHHHHHHHHHHHhhC-CCCHH
Q 040440 195 YAGESEAAIKGFEEILRKD-PLRVE 218 (355)
Q Consensus 195 ~~g~~~~A~~~~~~~~~~~-p~~~~ 218 (355)
..+-++-+++..+.+++.- +++..
T Consensus 909 ~~~a~~~vi~fA~lAI~~~~~dd~~ 933 (950)
T 4gq2_M 909 EESAYIDALEFSLLADASKETDDED 933 (950)
T ss_dssp HTTCHHHHHHHHHHHHHTCCSCCHH
T ss_pred hcCCHHHHHHHHHHHHhhcccCCcc
Confidence 8899999999999998753 44443
|
| >2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A | Back alignment and structure |
|---|
Probab=80.79 E-value=15 Score=27.20 Aligned_cols=79 Identities=18% Similarity=0.195 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHhhc---cCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCCHHHHHH
Q 040440 239 KRIEKAMERCKKEK---KKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEE--PRDFRPYLCQGIIYTLLRKKDEAEK 313 (355)
Q Consensus 239 ~~~~~Al~~~~~~~---~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~--~~~~~~~~~l~~~~~~~g~~~~A~~ 313 (355)
..+++++..+.... +++....+|..++.. .+ .+..+|..+.... -.....|...|..+...|++.+|.+
T Consensus 44 ~lLErc~~~f~~~~~YknD~RyLklWl~ya~~---~~---~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~ 117 (164)
T 2wvi_A 44 TLLERAVEALQGEKRYYSDPRFLNLWLKLGRL---CN---EPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADA 117 (164)
T ss_dssp HHHHHHHHHTTTCGGGTTCHHHHHHHHHHHHH---CS---CHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHhhhhhhhccCHHHHHHHHHHHHh---cC---CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHH
Confidence 34677777776633 333444445555544 23 4667777776644 3456778889999999999999999
Q ss_pred HHHHHHHhCC
Q 040440 314 QFEKFRRLVP 323 (355)
Q Consensus 314 ~~~~~l~~~p 323 (355)
+|+.+++...
T Consensus 118 Iy~~Gi~~~A 127 (164)
T 2wvi_A 118 IFQEGIQQKA 127 (164)
T ss_dssp HHHHHHHTTC
T ss_pred HHHHHHHcCC
Confidence 9999998764
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 355 | ||||
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 6e-18 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 1e-08 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 1e-07 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 2e-07 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 3e-06 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 3e-05 | |
| d1zbpa1 | 264 | e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V | 2e-08 | |
| d1zbpa1 | 264 | e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V | 6e-06 | |
| d1zbpa1 | 264 | e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V | 2e-05 | |
| d1qqea_ | 290 | a.118.8.1 (A:) Vesicular transport protein sec17 { | 3e-06 | |
| d2c2la1 | 201 | a.118.8.1 (A:24-224) STIP1 homology and U box-cont | 4e-06 | |
| d2c2la1 | 201 | a.118.8.1 (A:24-224) STIP1 homology and U box-cont | 0.002 | |
| d1dcea1 | 334 | a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr | 7e-06 | |
| d1ya0a1 | 497 | a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T | 2e-05 | |
| d1ya0a1 | 497 | a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T | 1e-04 | |
| d1ya0a1 | 497 | a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T | 3e-04 | |
| d1xnfa_ | 259 | a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli | 3e-05 | |
| d2h6fa1 | 315 | a.118.6.1 (A:55-369) Protein farnesyltransferase a | 3e-04 | |
| d1fcha_ | 323 | a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting | 9e-04 | |
| d1fcha_ | 323 | a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting | 0.004 | |
| d1hz4a_ | 366 | a.118.8.2 (A:) Transcription factor MalT domain II | 0.001 | |
| d1nzna_ | 122 | a.118.8.1 (A:) Mitochondria fission protein Fis1 { | 0.003 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 82.0 bits (201), Expect = 6e-18
Identities = 40/195 (20%), Positives = 68/195 (34%), Gaps = 7/195 (3%)
Query: 131 YEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKA 190
E+ + +PN ++A L V +++ AV R + L PN A
Sbjct: 185 IWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLA 244
Query: 191 QVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK 250
V G + AI + + P +AY L A + E E A+ C
Sbjct: 245 CVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALK-EKGSVAEAEDCYNTALRLCPT 303
Query: 251 EKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDE 310
D +A IK + EA+R+Y + ++ P + + K E
Sbjct: 304 H------ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQE 357
Query: 311 AEKQFEKFRRLVPRN 325
A +++ R+ P
Sbjct: 358 ALMHYKEAIRISPTF 372
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.5 bits (127), Expect = 1e-08
Identities = 29/161 (18%), Positives = 51/161 (31%), Gaps = 9/161 (5%)
Query: 173 DRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDK 232
+ IE +PN V + GE AI FE+ + DP ++AY L
Sbjct: 159 LKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVL----- 213
Query: 233 KLNEVEKRIEKAMERCKKEKKKSDLR-DFKLLIAQIKVMESKHSEALRVYEELVKEEPRD 291
+ + ++A+ + S +A + + A+ Y ++ +P
Sbjct: 214 ---KEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHF 270
Query: 292 FRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHPYREYF 332
Y EAE + RL P +
Sbjct: 271 PDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNL 311
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.4 bits (119), Expect = 1e-07
Identities = 20/97 (20%), Positives = 38/97 (39%)
Query: 131 YEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKA 190
E E L P ++L L ++ + + EAV + + +E+ P A
Sbjct: 287 VAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLA 346
Query: 191 QVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAY 227
V G+ + A+ ++E +R P +AY +
Sbjct: 347 SVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTL 383
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.7 bits (117), Expect = 2e-07
Identities = 32/218 (14%), Positives = 66/218 (30%), Gaps = 27/218 (12%)
Query: 131 YEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKA 190
+E E+ Q P++ L L + + ++L + I+ P E
Sbjct: 15 FEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLG 74
Query: 191 QVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERC-- 248
V G+ + AI+ + LR P ++ Y L A + V+ +
Sbjct: 75 NVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDL 134
Query: 249 -------------------------KKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEE 283
K + + + + + + + A+ +E+
Sbjct: 135 YCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEK 194
Query: 284 LVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRL 321
V +P Y+ G + R D A + + L
Sbjct: 195 AVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSL 232
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.2 bits (108), Expect = 3e-06
Identities = 13/67 (19%), Positives = 25/67 (37%)
Query: 161 KSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAY 220
++ A +L EP+ LL + + + + ++++PL EAY
Sbjct: 11 QAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAY 70
Query: 221 HGLVMAY 227
L Y
Sbjct: 71 SNLGNVY 77
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.1 bits (100), Expect = 3e-05
Identities = 11/64 (17%), Positives = 22/64 (34%)
Query: 262 LLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRL 321
+ +A + A R +L ++EP + L I+ R+ D + +
Sbjct: 3 MELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ 62
Query: 322 VPRN 325
P
Sbjct: 63 NPLL 66
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Score = 52.0 bits (124), Expect = 2e-08
Identities = 14/150 (9%), Positives = 53/150 (35%), Gaps = 8/150 (5%)
Query: 160 IKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEA 219
+ +L +A++++ I+ P + + ++ G+ E A + + ++ P +
Sbjct: 7 LSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPG 66
Query: 220 YHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSEALR 279
L + + + + + +E L+ + ++ + +
Sbjct: 67 ASQLRHLVKAAQARKDFAQGAATAKVLGENEE------LTKSLVSFNLSMVSQDYEQVSE 120
Query: 280 VYEELVKEEPRDFRPYLCQGIIYTLLRKKD 309
+ ++ + + +L ++ +R D
Sbjct: 121 LALQIEELRQE--KGFLANDTSFSDVRDID 148
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Score = 45.0 bits (106), Expect = 6e-06
Identities = 14/117 (11%), Positives = 38/117 (32%), Gaps = 2/117 (1%)
Query: 131 YEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFE-WQLLK 189
++ + + + + A+P D + +E+ A + + + I+L P L+
Sbjct: 12 LQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLR 71
Query: 190 AQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAME 246
V++ + A + + + S +V + + E
Sbjct: 72 HLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQ-DYEQVSELALQIEE 127
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Score = 43.1 bits (101), Expect = 2e-05
Identities = 12/59 (20%), Positives = 24/59 (40%)
Query: 271 ESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHPYR 329
E + +AL + E +K P+D + + + A++Q + +L P P
Sbjct: 9 EGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGA 67
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 290 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 46.1 bits (108), Expect = 3e-06
Identities = 17/120 (14%), Positives = 40/120 (33%), Gaps = 7/120 (5%)
Query: 219 AYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSEAL 278
L + + E A E +++ + + A +K ++ ++ EA
Sbjct: 119 FKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEAS 178
Query: 279 RVYEELVKEEPRD-------FRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHPYREY 331
+Y +L+K + +L +G+ A + ++ + P RE
Sbjct: 179 DIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRES 238
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 45.0 bits (105), Expect = 4e-06
Identities = 20/160 (12%), Positives = 46/160 (28%), Gaps = 2/160 (1%)
Query: 131 YEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKA 190
Y E + + NP +K Q+ +A+ R +EL+ +
Sbjct: 20 YPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 79
Query: 191 QVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNE--VEKRIEKAMERC 248
Q Q + AI + + + + + KK +E+R
Sbjct: 80 QCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSIEERRIHQESEL 139
Query: 249 KKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEE 288
+ + + + + + H + + + E
Sbjct: 140 HSYLTRLIAAERERELEECQRNHEGHEDDGHIRAQQACIE 179
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 36.9 bits (84), Expect = 0.002
Identities = 13/137 (9%), Positives = 36/137 (26%), Gaps = 7/137 (5%)
Query: 196 AGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKS 255
+ A + + ++PL Y + Y ++++ + + + +
Sbjct: 17 GRKYPEAAACYGRAITRNPLVAVYYTNRALCY-------LKMQQPEQALADCRRALELDG 69
Query: 256 DLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQF 315
+ Q ++ + EA+ + + + KK
Sbjct: 70 QSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSIE 129
Query: 316 EKFRRLVPRNHPYREYF 332
E+ H Y
Sbjct: 130 ERRIHQESELHSYLTRL 146
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 45.0 bits (105), Expect = 7e-06
Identities = 11/93 (11%), Positives = 27/93 (29%)
Query: 131 YEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKA 190
++ + L + + +E Q +E+ + L +L
Sbjct: 224 NDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLM 283
Query: 191 QVQSYAGESEAAIKGFEEILRKDPLRVEAYHGL 223
+ + ++ F + DP+R L
Sbjct: 284 RALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL 316
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.0 bits (103), Expect = 2e-05
Identities = 15/160 (9%), Positives = 51/160 (31%), Gaps = 9/160 (5%)
Query: 166 VEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVM 225
+++ + + L+ + + +L A+V + + ++++L D
Sbjct: 3 LQSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLEYALDKKVEQD 59
Query: 226 AYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELV 285
++ + K + K + + +++L F ++ +++ L+ +
Sbjct: 60 LWNHAFKNQITTLQGQAKNRANPNRSEVQANLSLF------LEAASGFYTQLLQELCTVF 113
Query: 286 KEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRN 325
+ GII K + ++
Sbjct: 114 NVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQH 153
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.3 bits (96), Expect = 1e-04
Identities = 16/186 (8%), Positives = 53/186 (28%), Gaps = 14/186 (7%)
Query: 135 EKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQL---LKAQ 191
+ ++ L + + E + + + + + N ++ L
Sbjct: 37 QDLYQKMLVTDLEYALDKKV--EQDLWNHAFKNQITTLQGQAKNRANPNRSEVQANLSLF 94
Query: 192 VQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKE 251
+++ +G ++ + D L + + + + K +
Sbjct: 95 LEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNK-QTHTSAIVKPQSSSC------ 147
Query: 252 KKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEA 311
+ + + I ++ S+A Y + P + +PY I+ +
Sbjct: 148 --SYICQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTT 205
Query: 312 EKQFEK 317
+ +
Sbjct: 206 IFYYCR 211
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.2 bits (93), Expect = 3e-04
Identities = 20/194 (10%), Positives = 53/194 (27%), Gaps = 13/194 (6%)
Query: 133 EKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQV 192
+ + + Q + ++ EV Q L + +++ + + K +
Sbjct: 4 QSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLEYALDK--KVEQ 58
Query: 193 QSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMER-CKKE 251
+ + I + + + ++ L + ++ C
Sbjct: 59 DLWNHAFKNQITTLQGQAKNRANPNRSEVQANLSLF-----LEAASGFYTQLLQELCTVF 113
Query: 252 KKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEA 311
R + I ++ S ++ + G I + +A
Sbjct: 114 NVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCS--YICQHCLVHLGDIARYRNQTSQA 171
Query: 312 EKQFEKFRRLVPRN 325
E + +LVP N
Sbjct: 172 ESYYRHAAQLVPSN 185
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Score = 42.9 bits (99), Expect = 3e-05
Identities = 31/201 (15%), Positives = 56/201 (27%), Gaps = 7/201 (3%)
Query: 131 YEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKA 190
+ Q LA P+ E L ++ A + D ++EL+P L +
Sbjct: 53 RALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRG 112
Query: 191 QVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK 250
Y G + A + DP L +A D+ ++ E + +K
Sbjct: 113 IALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDE-----KQAKEVLKQHFEK 167
Query: 251 EKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDE 310
K+ + ++ + G Y L D
Sbjct: 168 SDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDS 227
Query: 311 AEKQFEKFRRLVPRNHPYREY 331
A F+ N + E+
Sbjct: 228 ATALFKLAVANNVHN--FVEH 246
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.9 bits (92), Expect = 3e-04
Identities = 21/182 (11%), Positives = 52/182 (28%), Gaps = 9/182 (4%)
Query: 176 IELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLN 235
I + V SE A K + + + +H + K L+
Sbjct: 36 IIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLH 95
Query: 236 EVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPY 295
E I +E K + R + S+ L +++ ++ +++ +
Sbjct: 96 EEMNYITAIIEEQPKNYQVWHHR------RVLVEWLRDPSQELEFIADILNQDAKNYHAW 149
Query: 296 LCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHP---YREYFVDNMVATKIFGEKVDRESMA 352
+ + + D + ++ + RN+ R + + N
Sbjct: 150 QHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYT 209
Query: 353 SK 354
+
Sbjct: 210 LE 211
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.3 bits (87), Expect = 9e-04
Identities = 20/174 (11%), Positives = 46/174 (26%), Gaps = 14/174 (8%)
Query: 172 IDRLIELEPN----EFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAY 227
D+ + E + + + G+ A+ FE +++DP +EA+ L
Sbjct: 4 YDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQ 63
Query: 228 DGSDKKLNEVEKRIEKAME---------RCKKEKKKSDLRDFKLLIAQIKVMESKHSEAL 278
+++ + + +E ++ + + + A
Sbjct: 64 A-ENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAH 122
Query: 279 RVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHPYREYF 332
V P E ++ F RL P +
Sbjct: 123 LVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQC 176
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.3 bits (82), Expect = 0.004
Identities = 12/96 (12%), Positives = 35/96 (36%), Gaps = 2/96 (2%)
Query: 241 IEKAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGI 300
+K + ++ + + F+ + +++ E A+ ++E V+++P+ + G
Sbjct: 4 YDKGYQFEEENPLRDHPQPFEEGLRRLQ--EGDLPNAVLLFEAAVQQDPKHMEAWQYLGT 61
Query: 301 IYTLLRKKDEAEKQFEKFRRLVPRNHPYREYFVDNM 336
++ A + L P N +
Sbjct: 62 TQAENEQELLAISALRRCLELKPDNQTALMALAVSF 97
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Score = 38.0 bits (86), Expect = 0.001
Identities = 23/176 (13%), Positives = 52/176 (29%), Gaps = 14/176 (7%)
Query: 176 IELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDP-----LRVEAYHGLVMAYDGS 230
I + E+ L+AQV G + A + + L + P R+ A L
Sbjct: 5 IREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLH-C 63
Query: 231 DKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPR 290
+L +++ + ++ + ++I + A E+ +
Sbjct: 64 KGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINE 123
Query: 291 DFRP--------YLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHPYREYFVDNMVA 338
+ + + DEAE ++ P ++ M+
Sbjct: 124 QHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLI 179
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 35.1 bits (80), Expect = 0.003
Identities = 15/107 (14%), Positives = 35/107 (32%), Gaps = 5/107 (4%)
Query: 131 YEEKEKEIEQHLAANPNDIEAL---QTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQL 187
+ EK+ + AA + + + + + +++ L+ E +
Sbjct: 15 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDY 74
Query: 188 L--KAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDK 232
+ A E E A+K +L+ +P +A + K
Sbjct: 75 VFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMKK 121
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 355 | |||
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.94 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.94 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.91 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.9 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.9 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.89 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.87 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.8 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 99.74 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.72 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.72 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.71 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 99.7 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.69 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 99.69 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 99.67 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.65 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.65 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 99.62 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.62 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 99.61 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 99.61 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 99.58 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 99.58 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.58 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 99.57 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 99.55 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 99.55 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 99.55 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.55 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 99.53 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 99.52 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 99.52 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 99.5 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.5 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 99.49 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 99.48 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 99.46 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 99.46 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.44 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.38 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 99.27 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 99.25 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 99.23 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 99.21 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 99.21 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 99.18 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 99.16 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 99.08 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.98 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 98.96 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 98.92 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 98.66 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 98.49 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 98.25 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 98.24 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 95.47 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 95.21 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 95.09 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 93.74 | |
| d1o9da_ | 236 | 14-3-3-like protein C {Common tobacco (Nicotiana t | 88.08 | |
| d2o02a1 | 230 | zeta isoform {Cow (Bos taurus) [TaxId: 9913]} | 84.23 |
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=2.7e-25 Score=189.84 Aligned_cols=195 Identities=16% Similarity=0.171 Sum_probs=172.6
Q ss_pred hhccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHH
Q 040440 125 AREDVSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIK 204 (355)
Q Consensus 125 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 204 (355)
.+..+++++|+..|+++++.+|+++.+|..+|.++...|++++|+..|+++++++|++...+..+|.++...|++++|++
T Consensus 29 ~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~ 108 (323)
T d1fcha_ 29 RLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACE 108 (323)
T ss_dssp HHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccccccccccccccccccccccccccc
Confidence 36667999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCC---------------------------------------------------CHHHHHHHHHHHhccCch
Q 040440 205 GFEEILRKDPL---------------------------------------------------RVEAYHGLVMAYDGSDKK 233 (355)
Q Consensus 205 ~~~~~~~~~p~---------------------------------------------------~~~~~~~l~~~~~~~~~~ 233 (355)
.+++++...|. +..++..+|.++...|+
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~- 187 (323)
T d1fcha_ 109 ILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGE- 187 (323)
T ss_dssp HHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTC-
T ss_pred chhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHH-
Confidence 88887765443 23445667777777777
Q ss_pred HHHHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHH
Q 040440 234 LNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAE 312 (355)
Q Consensus 234 ~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~ 312 (355)
+++|+..+++ ....|....++..+|.+|...|++++|++.|+++++.+|++..+|+.+|.+|..+|++++|+
T Consensus 188 -------~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~ 260 (323)
T d1fcha_ 188 -------YDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAV 260 (323)
T ss_dssp -------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred -------HhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHHHHHHHHHHCCCHHHHH
Confidence 6777777766 45578889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCChh
Q 040440 313 KQFEKFRRLVPRNHP 327 (355)
Q Consensus 313 ~~~~~~l~~~p~~~~ 327 (355)
..|+++++++|++..
T Consensus 261 ~~~~~al~l~p~~~~ 275 (323)
T d1fcha_ 261 EHFLEALNMQRKSRG 275 (323)
T ss_dssp HHHHHHHHHHHTC--
T ss_pred HHHHHHHHhCCcChh
Confidence 999999999888744
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=1.1e-24 Score=189.73 Aligned_cols=196 Identities=19% Similarity=0.129 Sum_probs=184.7
Q ss_pred hccC-CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHH
Q 040440 126 REDV-SYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIK 204 (355)
Q Consensus 126 ~~~~-~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 204 (355)
+... ++++|...++++++.+|++..++..+|.++...|++++|+..++++...++.....+..+|.++...|++++|+.
T Consensus 179 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 258 (388)
T d1w3ba_ 179 FNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAID 258 (388)
T ss_dssp HHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHCCCHHHHHH
Confidence 4444 999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHHHccCHHHHHHHHHH
Q 040440 205 GFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQIKVMESKHSEALRVYEE 283 (355)
Q Consensus 205 ~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 283 (355)
.|+++++.+|++..++..+|.++...|+ +++|++.++. ....+.....+..++.++...|++++|+..|++
T Consensus 259 ~~~~al~~~p~~~~~~~~l~~~~~~~~~--------~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 330 (388)
T d1w3ba_ 259 TYRRAIELQPHFPDAYCNLANALKEKGS--------VAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRK 330 (388)
T ss_dssp HHHHHHHTCSSCHHHHHHHHHHHHHHSC--------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCC--------HHHHHHHHHhhhccCCccchhhhHHHHHHHHCCCHHHHHHHHHH
Confidence 9999999999999999999999999999 7777777776 556788899999999999999999999999999
Q ss_pred HHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHH
Q 040440 284 LVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHPYR 329 (355)
Q Consensus 284 ~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~ 329 (355)
+++.+|++..+++.+|.++...|++++|+.+|+++++++|++....
T Consensus 331 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~ 376 (388)
T d1w3ba_ 331 ALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAY 376 (388)
T ss_dssp HTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHH
T ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 9999999999999999999999999999999999999999986553
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=2.7e-22 Score=174.37 Aligned_cols=195 Identities=15% Similarity=0.155 Sum_probs=146.1
Q ss_pred hhccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHH
Q 040440 125 AREDVSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIK 204 (355)
Q Consensus 125 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 204 (355)
.|+.+++++|++.|+++++.+|+++.++..+|.+|...|++++|+..|+++++.+|++..++..+|.++...|++++|+.
T Consensus 9 ~~~~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~~~A~~ 88 (388)
T d1w3ba_ 9 EYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIE 88 (388)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhcccccccc
Confidence 47778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCCHHH-----------------------------------------------------------------
Q 040440 205 GFEEILRKDPLRVEA----------------------------------------------------------------- 219 (355)
Q Consensus 205 ~~~~~~~~~p~~~~~----------------------------------------------------------------- 219 (355)
.++.+.+..+.....
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (388)
T d1w3ba_ 89 HYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNF 168 (388)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTC
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHhhccCcch
Confidence 998888776655433
Q ss_pred ---HHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHH
Q 040440 220 ---YHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPY 295 (355)
Q Consensus 220 ---~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~ 295 (355)
+..++.++...|+ +++|+..+++ ....|....++..+|.++...|++++|+..++++....+.....+
T Consensus 169 ~~~~~~l~~~~~~~~~--------~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 240 (388)
T d1w3ba_ 169 AVAWSNLGCVFNAQGE--------IWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVH 240 (388)
T ss_dssp HHHHHHHHHHHHTTTC--------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHH
T ss_pred hHHHHhhcccccccCc--------HHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHHH
Confidence 3344444444444 3444444444 334555566666666666666666666666666666666666666
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCChh
Q 040440 296 LCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHP 327 (355)
Q Consensus 296 ~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 327 (355)
..+|.++...|++++|+..|+++++++|++..
T Consensus 241 ~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 272 (388)
T d1w3ba_ 241 GNLACVYYEQGLIDLAIDTYRRAIELQPHFPD 272 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence 66666666666666666666666666665543
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.90 E-value=1.8e-22 Score=171.10 Aligned_cols=192 Identities=11% Similarity=0.068 Sum_probs=173.7
Q ss_pred hccC-CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHH
Q 040440 126 REDV-SYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQ-KLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAI 203 (355)
Q Consensus 126 ~~~~-~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 203 (355)
+..+ .+++|++.++++++.+|++..+|..+|.++...| ++++|+..++++++.+|++..+|..+|.++...|++++|+
T Consensus 53 ~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~~l~~~~eAl 132 (315)
T d2h6fa1 53 LQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQEL 132 (315)
T ss_dssp HHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHH
T ss_pred HHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHhhccHHHHH
Confidence 3334 8899999999999999999999999999999987 5999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHHHccC------HHH
Q 040440 204 KGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQIKVMESK------HSE 276 (355)
Q Consensus 204 ~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~~~g~------~~~ 276 (355)
+.++++++++|++..+|..+|.++...|+ +++|++.+++ +..+|.+..+|..+|.++...+. +++
T Consensus 133 ~~~~kal~~dp~n~~a~~~~~~~~~~~~~--------~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~~~~~~~~~~ 204 (315)
T d2h6fa1 133 EFIADILNQDAKNYHAWQHRQWVIQEFKL--------WDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLER 204 (315)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHTC--------CTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHH
T ss_pred HHHhhhhhhhhcchHHHHHHHHHHHHHHh--------hHHHHHHHHHHHHHCCccHHHHHHHHHHHHHccccchhhhhHH
Confidence 99999999999999999999999999999 5666666655 45589999999999999888776 689
Q ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q 040440 277 ALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNH 326 (355)
Q Consensus 277 A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~ 326 (355)
|+..+.++++.+|++..+|+.++.++...| .+++.+.+++++++.|+..
T Consensus 205 ai~~~~~al~~~P~~~~~~~~l~~ll~~~~-~~~~~~~~~~~~~l~~~~~ 253 (315)
T d2h6fa1 205 EVQYTLEMIKLVPHNESAWNYLKGILQDRG-LSKYPNLLNQLLDLQPSHS 253 (315)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHTTTC-GGGCHHHHHHHHHHTTTCC
T ss_pred hHHHHHHHHHhCCCchHHHHHHHHHHHhcC-hHHHHHHHHHHHHhCCCcC
Confidence 999999999999999999999999876554 6889999999999988753
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.90 E-value=8.6e-22 Score=167.79 Aligned_cols=180 Identities=14% Similarity=0.107 Sum_probs=158.5
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHh
Q 040440 149 IEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYD 228 (355)
Q Consensus 149 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 228 (355)
....+..|..++..|++++|+..|+++++.+|++..+|..+|.++...|++++|+..|+++++++|++...+..+|.++.
T Consensus 19 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 98 (323)
T d1fcha_ 19 HPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFT 98 (323)
T ss_dssp CSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccccccccccccccccc
Confidence 34467899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCchHHHHH------------------------------------------HHHHHHHHHHHh-hcc--CCchHHHHHH
Q 040440 229 GSDKKLNEVE------------------------------------------KRIEKAMERCKK-EKK--KSDLRDFKLL 263 (355)
Q Consensus 229 ~~~~~~~~a~------------------------------------------~~~~~Al~~~~~-~~~--~~~~~~~~~~ 263 (355)
..|+ ++.+. ..+.++++.+.+ ... ...+..++..
T Consensus 99 ~~~~-~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~ 177 (323)
T d1fcha_ 99 NESL-QRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCG 177 (323)
T ss_dssp HTTC-HHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHH
T ss_pred cccc-ccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchh
Confidence 9988 44442 334455555554 222 2345677889
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHH
Q 040440 264 IAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHPYR 329 (355)
Q Consensus 264 la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~ 329 (355)
+|.++...|++++|+..|++++..+|++..+|+.+|.++...|++++|+++|+++++++|++....
T Consensus 178 l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 243 (323)
T d1fcha_ 178 LGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSR 243 (323)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred hHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999986543
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.89 E-value=4.9e-22 Score=168.39 Aligned_cols=181 Identities=10% Similarity=0.087 Sum_probs=165.2
Q ss_pred cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCCCCHHHHHH
Q 040440 144 ANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAG-ESEAAIKGFEEILRKDPLRVEAYHG 222 (355)
Q Consensus 144 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~~~~~~p~~~~~~~~ 222 (355)
.+|+..+++..+|.++.+.+.+++|+..++++++++|++..+|..+|.++...| ++++|+..++++++.+|++..+|..
T Consensus 38 ~~p~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~ 117 (315)
T d2h6fa1 38 YSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHH 117 (315)
T ss_dssp CCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 456778889999999999999999999999999999999999999999999987 5999999999999999999999999
Q ss_pred HHHHHhccCchHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 040440 223 LVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGII 301 (355)
Q Consensus 223 l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~ 301 (355)
+|.++...|+ +++|++.+.+ ...+|.+..+|..+|.++...|++++|+..|+++++.+|.+..+|+++|.+
T Consensus 118 ~~~~~~~l~~--------~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~ 189 (315)
T d2h6fa1 118 RRVLVEWLRD--------PSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFV 189 (315)
T ss_dssp HHHHHHHHTC--------CTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HhHHHHhhcc--------HHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHH
Confidence 9999999999 6666666666 556899999999999999999999999999999999999999999999999
Q ss_pred HHHcCC------HHHHHHHHHHHHHhCCCChhHHHHH
Q 040440 302 YTLLRK------KDEAEKQFEKFRRLVPRNHPYREYF 332 (355)
Q Consensus 302 ~~~~g~------~~~A~~~~~~~l~~~p~~~~~~~~~ 332 (355)
+...|. +++|+..+.++++++|++.....++
T Consensus 190 l~~~~~~~~~~~~~~ai~~~~~al~~~P~~~~~~~~l 226 (315)
T d2h6fa1 190 ISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYL 226 (315)
T ss_dssp HHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred HHHccccchhhhhHHhHHHHHHHHHhCCCchHHHHHH
Confidence 988876 5899999999999999986554333
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.87 E-value=3.5e-21 Score=158.67 Aligned_cols=192 Identities=15% Similarity=0.075 Sum_probs=150.3
Q ss_pred hccC-CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHH
Q 040440 126 REDV-SYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIK 204 (355)
Q Consensus 126 ~~~~-~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 204 (355)
|... ++++|+..|+++++.+|+++.+|+.+|.+|...|++++|+..|+++++.+|++..++..+|.++...|++++|++
T Consensus 47 y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~ 126 (259)
T d1xnfa_ 47 YDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQD 126 (259)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHH
Confidence 5545 999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh---hccCCchHHH-HHHHHHHHHHccCHHHHHHH
Q 040440 205 GFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK---EKKKSDLRDF-KLLIAQIKVMESKHSEALRV 280 (355)
Q Consensus 205 ~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~---~~~~~~~~~~-~~~la~~~~~~g~~~~A~~~ 280 (355)
.|+++++.+|++......++.++...+. .+....+... .......... ...++. ....+.++.+...
T Consensus 127 ~~~~al~~~p~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 197 (259)
T d1xnfa_ 127 DLLAFYQDDPNDPFRSLWLYLAEQKLDE--------KQAKEVLKQHFEKSDKEQWGWNIVEFYLGN-ISEQTLMERLKAD 197 (259)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHCH--------HHHHHHHHHHHHHSCCCSTHHHHHHHHTTS-SCHHHHHHHHHHH
T ss_pred HHHHHHhhccccHHHHHHHHHHHHHhhh--------HHHHHHHHHHhhccchhhhhhhHHHHHHHH-HHHHHHHHHHHHH
Confidence 9999999999998888777777766664 2222222222 2222211111 111111 1123445666666
Q ss_pred HHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q 040440 281 YEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNH 326 (355)
Q Consensus 281 ~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~ 326 (355)
+.......|....+|+.+|.+|...|++++|+.+|++++..+|++.
T Consensus 198 ~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 243 (259)
T d1xnfa_ 198 ATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNF 243 (259)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTC
T ss_pred HHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCH
Confidence 6666666677778999999999999999999999999999999873
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.80 E-value=4.2e-18 Score=145.50 Aligned_cols=231 Identities=10% Similarity=0.072 Sum_probs=180.2
Q ss_pred ccccccccccchhhhhhhhhhhccC--------CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccC--HHHHHHHHHH
Q 040440 105 PVAAAATVESTNESTKDTTSAREDV--------SYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQK--LVEAVDVIDR 174 (355)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~--~~~A~~~~~~ 174 (355)
.+...|...+++.-........... ++++|+.+++++++.+|++..+|..+|.++...++ +++|+..+++
T Consensus 55 ~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 134 (334)
T d1dcea1 55 ILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCAR 134 (334)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHH
T ss_pred HHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhccccHHHHHHHHHH
Confidence 4566777776665444432222221 37899999999999999999999999999887765 8999999999
Q ss_pred HHHcCCCchHHH-HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHH-------HHHHHHHHH
Q 040440 175 LIELEPNEFEWQ-LLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEV-------EKRIEKAME 246 (355)
Q Consensus 175 ~~~~~~~~~~~~-~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a-------~~~~~~Al~ 246 (355)
+++.+|.+...+ ...|.++...|++++|+..++++++.+|.+..+|+.+|.++...|+. +++ ........+
T Consensus 135 al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~-~~A~~~~~~~~~~~~~~~~ 213 (334)
T d1dcea1 135 FLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQ-PDSGPQGRLPENVLLKELE 213 (334)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCC-CCSSSCCSSCHHHHHHHHH
T ss_pred HHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCH-HHHHHHHHHhHHhHHHHHH
Confidence 999999888875 56778888999999999999999999999999999999999999873 222 111222222
Q ss_pred HH----------------Hh-hccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHH
Q 040440 247 RC----------------KK-EKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKD 309 (355)
Q Consensus 247 ~~----------------~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~ 309 (355)
.+ .. ....+.....+..++.++...|++++|+..+.+++..+|.+..++..+|.++...|+++
T Consensus 214 ~~~~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 293 (334)
T d1dcea1 214 LVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEK 293 (334)
T ss_dssp HHHHHHHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHH
T ss_pred HHHHHHHhcchhHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHH
Confidence 21 11 22333334444567888889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCChhHHHHHHHHH
Q 040440 310 EAEKQFEKFRRLVPRNHPYREYFVDNM 336 (355)
Q Consensus 310 ~A~~~~~~~l~~~p~~~~~~~~~~~~~ 336 (355)
+|+++|+++++++|++..+...+...+
T Consensus 294 eA~~~~~~ai~ldP~~~~y~~~L~~~~ 320 (334)
T d1dcea1 294 ETLQYFSTLKAVDPMRAAYLDDLRSKF 320 (334)
T ss_dssp HHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCcccHHHHHHHHHHH
Confidence 999999999999998765544443333
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.74 E-value=8e-17 Score=134.53 Aligned_cols=176 Identities=13% Similarity=0.064 Sum_probs=142.3
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHcCC------CchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHH
Q 040440 152 LQTLMEVRIKSQKLVEAVDVIDRLIELEP------NEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLR------VEA 219 (355)
Q Consensus 152 ~~~la~~~~~~g~~~~A~~~~~~~~~~~~------~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~ 219 (355)
|...|.+|...|+|++|++.|+++++... .....+..+|.+|...|++++|++.|++++++.+.. ..+
T Consensus 40 y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 119 (290)
T d1qqea_ 40 CVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANF 119 (290)
T ss_dssp HHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHH
Confidence 34458899999999999999999988721 223478999999999999999999999999885443 456
Q ss_pred HHHHHHHHhc-cCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCh------
Q 040440 220 YHGLVMAYDG-SDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDF------ 292 (355)
Q Consensus 220 ~~~l~~~~~~-~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~------ 292 (355)
+..++.++.. .|+ ++.|...+++|++++......+....++..+|.+|...|+|++|+..|++++...+...
T Consensus 120 ~~~l~~~~~~~~~~-~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~ 198 (290)
T d1qqea_ 120 KFELGEILENDLHD-YAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSL 198 (290)
T ss_dssp HHHHHHHHHHTTCC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGH
T ss_pred HHHHHHhHhhHHHH-HHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhH
Confidence 7788888865 466 88888999999988877655556677799999999999999999999999999877653
Q ss_pred -HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhH
Q 040440 293 -RPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHPY 328 (355)
Q Consensus 293 -~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~ 328 (355)
..+...+.++...|+++.|...++++++++|.....
T Consensus 199 ~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~s 235 (290)
T d1qqea_ 199 KDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADS 235 (290)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-------
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccch
Confidence 356788999999999999999999999998865443
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.72 E-value=1.4e-16 Score=130.62 Aligned_cols=154 Identities=14% Similarity=0.023 Sum_probs=129.3
Q ss_pred CHHHHHHHHHHHHHcCC----CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHH
Q 040440 130 SYEEKEKEIEQHLAANP----NDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKG 205 (355)
Q Consensus 130 ~~~~A~~~~~~~l~~~p----~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 205 (355)
+.+.++..+++++...+ ....+++.+|.+|...|++++|+..|+++++++|+++.+|..+|.++...|++++|+..
T Consensus 14 ~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~ 93 (259)
T d1xnfa_ 14 QQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEA 93 (259)
T ss_dssp HHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhh
Confidence 56778888888887543 35678999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 040440 206 FEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQIKVMESKHSEALRVYEEL 284 (355)
Q Consensus 206 ~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 284 (355)
|+++++++|++..++..+|.++...|+ +++|++.+++ ....|.+......++..+...+..+.+.......
T Consensus 94 ~~~al~~~p~~~~a~~~lg~~~~~~g~--------~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (259)
T d1xnfa_ 94 FDSVLELDPTYNYAHLNRGIALYYGGR--------DKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHF 165 (259)
T ss_dssp HHHHHHHCTTCTHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred hhHHHHHHhhhhhhHHHHHHHHHHHhh--------HHHHHHHHHHHHhhccccHHHHHHHHHHHHHhhhHHHHHHHHHHh
Confidence 999999999999999999999999999 6666666655 3446777777777888888777766666666665
Q ss_pred HHhCCCC
Q 040440 285 VKEEPRD 291 (355)
Q Consensus 285 l~~~~~~ 291 (355)
....+..
T Consensus 166 ~~~~~~~ 172 (259)
T d1xnfa_ 166 EKSDKEQ 172 (259)
T ss_dssp HHSCCCS
T ss_pred hccchhh
Confidence 5555443
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.72 E-value=1.3e-16 Score=113.85 Aligned_cols=104 Identities=14% Similarity=0.086 Sum_probs=99.0
Q ss_pred hhccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHH
Q 040440 125 AREDVSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIK 204 (355)
Q Consensus 125 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 204 (355)
.+..+++++|+..|+++++.+|+++.+|..+|.+|...|++++|+..++++++.+|++..+|+.+|.++..+|++++|+.
T Consensus 13 ~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~ 92 (117)
T d1elwa_ 13 ALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKR 92 (117)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCHHHHHH
Confidence 45566999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHh
Q 040440 205 GFEEILRKDPLRVEAYHGLVMAYD 228 (355)
Q Consensus 205 ~~~~~~~~~p~~~~~~~~l~~~~~ 228 (355)
.|+++++.+|+++.++..++.+..
T Consensus 93 ~~~~a~~~~p~~~~~~~~l~~l~~ 116 (117)
T d1elwa_ 93 TYEEGLKHEANNPQLKEGLQNMEA 116 (117)
T ss_dssp HHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHhC
Confidence 999999999999999988887653
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.71 E-value=4.2e-16 Score=111.14 Aligned_cols=110 Identities=16% Similarity=0.138 Sum_probs=72.7
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccC
Q 040440 152 LQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSD 231 (355)
Q Consensus 152 ~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 231 (355)
+...|..++..|++++|+..|+++++.+|++..+|..+|.++...|++++|+..|+++++++|+++.+|+.+|.++
T Consensus 6 l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~---- 81 (117)
T d1elwa_ 6 LKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL---- 81 (117)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH----
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHH----
Confidence 4456677777777777777777777777777777777777777777777777777777777776666665555444
Q ss_pred chHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 040440 232 KKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIY 302 (355)
Q Consensus 232 ~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~ 302 (355)
..+|++++|+..|+++++.+|++..++..++.+.
T Consensus 82 -------------------------------------~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~l~ 115 (117)
T d1elwa_ 82 -------------------------------------EFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 115 (117)
T ss_dssp -------------------------------------HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred -------------------------------------HHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHh
Confidence 3445566666666666666666666666555543
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.70 E-value=8.2e-16 Score=119.80 Aligned_cols=135 Identities=13% Similarity=0.046 Sum_probs=98.5
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCc
Q 040440 153 QTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDK 232 (355)
Q Consensus 153 ~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 232 (355)
...|..+...|+|++|++.|+++ .+.++.+|+++|.+|..+|++++|++.|+++++++|+++.+|+.+|.++..+|+
T Consensus 9 ~~~g~~~~~~~d~~~Al~~~~~i---~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~ 85 (192)
T d1hh8a_ 9 WNEGVLAADKKDWKGALDAFSAV---QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEK 85 (192)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTS---SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHCCCHHHHHHHHHhc---CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhcc
Confidence 35577778888888888887753 455667778888888888888888888888888888888888888888888887
Q ss_pred hHHHHHHHHHHHHHHHHhh----------ccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Q 040440 233 KLNEVEKRIEKAMERCKKE----------KKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRD 291 (355)
Q Consensus 233 ~~~~a~~~~~~Al~~~~~~----------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~ 291 (355)
+++|...+++|+...+.. ........+++.+|.++...|++++|++.+++++...|+.
T Consensus 86 -~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~ 153 (192)
T d1hh8a_ 86 -YDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 153 (192)
T ss_dssp -HHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred -HHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 666666666666543320 0011234667788888888888888888888888887754
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.69 E-value=3.1e-16 Score=133.66 Aligned_cols=192 Identities=9% Similarity=-0.077 Sum_probs=150.1
Q ss_pred cccccccccchhhhhhhhhhhccCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHHccCHHHHHHHHHHHHHcCCCchH
Q 040440 106 VAAAATVESTNESTKDTTSAREDVSYEEKEKEIEQHLAANPNDIEALQ-TLMEVRIKSQKLVEAVDVIDRLIELEPNEFE 184 (355)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~-~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 184 (355)
+...|.....+..++.........++++|+..++++++.+|.+..++. ..|.++...|++++|+..++++++.+|.+..
T Consensus 100 l~~~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~ 179 (334)
T d1dcea1 100 LRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYS 179 (334)
T ss_dssp HHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHH
T ss_pred HHhCCCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCHH
Confidence 344555555555555442333344799999999999999999999864 6778888999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH------------------------------HHHHHHHhccCchH
Q 040440 185 WQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAY------------------------------HGLVMAYDGSDKKL 234 (355)
Q Consensus 185 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~------------------------------~~l~~~~~~~~~~~ 234 (355)
+|..+|.++...|++++|+..+++++...|.....+ ..++.++..
T Consensus 180 a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~----- 254 (334)
T d1dcea1 180 SWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTV----- 254 (334)
T ss_dssp HHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHH-----
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhHHhHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCcchhhHHHHHHHHHHH-----
Confidence 999999999999998776555544444333322222 222222222
Q ss_pred HHHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc
Q 040440 235 NEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLL 305 (355)
Q Consensus 235 ~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~ 305 (355)
.+.+.+|+..+.+ ...+|....++..+|.+|...|++++|+++|+++++++|.+...|..++..+...
T Consensus 255 ---~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L~~~~~~e 323 (334)
T d1dcea1 255 ---LQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLE 323 (334)
T ss_dssp ---HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH
T ss_pred ---HhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHHHHHHHHhHh
Confidence 3458888888888 6778889999999999999999999999999999999999999999998877753
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.69 E-value=1.7e-15 Score=114.41 Aligned_cols=122 Identities=18% Similarity=0.152 Sum_probs=91.5
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhcc
Q 040440 151 ALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGS 230 (355)
Q Consensus 151 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 230 (355)
.+...|..|++.|+|++|+.+|+++++.+|++..+|..+|.++...|++++|+..|+++++++|++..++..+|.++
T Consensus 12 ~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~--- 88 (159)
T d1a17a_ 12 ELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN--- 88 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHH---
Confidence 35567888888888888888888888888888888888888888888888888888888888888877776666555
Q ss_pred CchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH--cCCH
Q 040440 231 DKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTL--LRKK 308 (355)
Q Consensus 231 ~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~--~g~~ 308 (355)
...|++++|+..|++++..+|++..++..++.+... .+.+
T Consensus 89 --------------------------------------~~~g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~ 130 (159)
T d1a17a_ 89 --------------------------------------MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAF 130 (159)
T ss_dssp --------------------------------------HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHH
T ss_pred --------------------------------------HHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 445667777777777777777777776666655432 3334
Q ss_pred HHHHH
Q 040440 309 DEAEK 313 (355)
Q Consensus 309 ~~A~~ 313 (355)
++|+.
T Consensus 131 ~~a~~ 135 (159)
T d1a17a_ 131 ERAIA 135 (159)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 44443
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.67 E-value=1.9e-15 Score=114.11 Aligned_cols=104 Identities=17% Similarity=0.153 Sum_probs=98.6
Q ss_pred hhccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHH
Q 040440 125 AREDVSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIK 204 (355)
Q Consensus 125 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 204 (355)
.+..++|++|+..|+++++.+|++..+|..+|.++...|++++|+..|+++++++|++..+|..+|.++...|++++|+.
T Consensus 20 ~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~~~eA~~ 99 (159)
T d1a17a_ 20 YFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALR 99 (159)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCCHHHHHH
Confidence 45666999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHh
Q 040440 205 GFEEILRKDPLRVEAYHGLVMAYD 228 (355)
Q Consensus 205 ~~~~~~~~~p~~~~~~~~l~~~~~ 228 (355)
.|++++.++|++..++..++.+..
T Consensus 100 ~~~~a~~~~p~~~~~~~~l~~~~~ 123 (159)
T d1a17a_ 100 DYETVVKVKPHDKDAKMKYQECNK 123 (159)
T ss_dssp HHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHH
Confidence 999999999999999888776653
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.65 E-value=5e-14 Score=118.31 Aligned_cols=187 Identities=13% Similarity=0.027 Sum_probs=135.4
Q ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc--------------cCHHHHHHHHHHHHHc-CCCchHHHHHHHHHHHH
Q 040440 131 YEEKEKEIEQHLAANPNDIEALQTLMEVRIKS--------------QKLVEAVDVIDRLIEL-EPNEFEWQLLKAQVQSY 195 (355)
Q Consensus 131 ~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~--------------g~~~~A~~~~~~~~~~-~~~~~~~~~~la~~~~~ 195 (355)
.+.+..+|++++...|.+++.|...+..+... +..++|..+|+++++. .|.+...|..++..+..
T Consensus 32 ~~Rv~~vyerAl~~~~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~ 111 (308)
T d2onda1 32 TKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence 45566778888888888888877766654332 3456777888888764 56677777777888888
Q ss_pred cCCHHHHHHHHHHHHhhCCCCH-HHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHHH-cc
Q 040440 196 AGESEAAIKGFEEILRKDPLRV-EAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQIKVM-ES 272 (355)
Q Consensus 196 ~g~~~~A~~~~~~~~~~~p~~~-~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~~-~g 272 (355)
.|++++|+..|+++++..|.+. .+|..++....+.|+ +++|.+++++ ....+.....+...+..... .|
T Consensus 112 ~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~--------~~~ar~i~~~al~~~~~~~~~~~~~a~~e~~~~~ 183 (308)
T d2onda1 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEG--------IKSGRMIFKKAREDARTRHHVYVTAALMEYYCSK 183 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHC--------HHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSC
T ss_pred cccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCC--------hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcc
Confidence 8888888888888888777653 467777777777666 6666666666 45566666677777765443 47
Q ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 040440 273 KHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRN 325 (355)
Q Consensus 273 ~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~ 325 (355)
+.+.|..+|++++..+|+++..|..++..+...|+.++|+.+|++++...|.+
T Consensus 184 ~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~ 236 (308)
T d2onda1 184 DKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP 236 (308)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSC
T ss_pred CHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Confidence 78888888888888888888888888888888888888888888888776644
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.65 E-value=4.1e-14 Score=118.89 Aligned_cols=191 Identities=9% Similarity=0.016 Sum_probs=164.5
Q ss_pred CHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchH-HHHHHHHHHHHcCCHHHHHHHHH
Q 040440 130 SYEEKEKEIEQHLAA-NPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFE-WQLLKAQVQSYAGESEAAIKGFE 207 (355)
Q Consensus 130 ~~~~A~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~la~~~~~~g~~~~A~~~~~ 207 (355)
..++|..+|+++++. .|.+...|...+..+...|++++|..+|++++...|.+.. +|..++......|++++|+.+|+
T Consensus 79 ~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~ 158 (308)
T d2onda1 79 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 568899999999974 7889999999999999999999999999999999887654 78899999999999999999999
Q ss_pred HHHhhCCCCHHHHHHHHHHHhc-cCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 040440 208 EILRKDPLRVEAYHGLVMAYDG-SDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVK 286 (355)
Q Consensus 208 ~~~~~~p~~~~~~~~l~~~~~~-~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 286 (355)
++++..|.....+...+..... .|+ .+.+...++.++. ..|.+..++..++.++...|++++|..+|++++.
T Consensus 159 ~al~~~~~~~~~~~~~a~~e~~~~~~-~~~a~~i~e~~l~------~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~ 231 (308)
T d2onda1 159 KAREDARTRHHVYVTAALMEYYCSKD-KSVAFKIFELGLK------KYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLT 231 (308)
T ss_dssp HHHTSTTCCTHHHHHHHHHHHHTSCC-HHHHHHHHHHHHH------HHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHhCCCcHHHHHHHHHHHHHhccC-HHHHHHHHHHHHH------hhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 9999999999999888877544 455 4444455555544 4678899999999999999999999999999999
Q ss_pred hCCCCh----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChh
Q 040440 287 EEPRDF----RPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHP 327 (355)
Q Consensus 287 ~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 327 (355)
..|.++ .+|..........|+.+.+..+++++.+..|+...
T Consensus 232 ~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~~~ 276 (308)
T d2onda1 232 SGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYE 276 (308)
T ss_dssp SSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTTS
T ss_pred hCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCccccc
Confidence 877543 47888888888999999999999999999987643
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.62 E-value=1.4e-16 Score=143.01 Aligned_cols=210 Identities=8% Similarity=0.019 Sum_probs=117.4
Q ss_pred ccccccccchhhhhhhhhhhccC-CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCC--Cch
Q 040440 107 AAAATVESTNESTKDTTSAREDV-SYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEP--NEF 183 (355)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~--~~~ 183 (355)
...|....+...++.. +... ++++| |++++..+|+....+...+. .....|..+++.+++..+... +..
T Consensus 14 ~l~p~~a~a~~~la~~---~~~~~~l~ea---ye~~i~~dp~~a~~~~~e~~--Lw~~~y~~~ie~~r~~~k~~~~~~~~ 85 (497)
T d1ya0a1 14 VLKADMTDSKLGPAEV---WTSRQALQDL---YQKMLVTDLEYALDKKVEQD--LWNHAFKNQITTLQGQAKNRANPNRS 85 (497)
T ss_dssp HHHGGGTCSSSCSSSS---HHHHHHHHHH---HHHHHHHCHHHHHHHTHHHH--HHHHHTHHHHHHHHHHHSCSSCTTTT
T ss_pred HcCCCCHHHHhhHHHH---HHHHchHHHH---HHHHHHcChhhHHHHhHHHH--HHHHHHHHHHHHHHHhcccccCccHH
Confidence 3344444444444444 3222 44433 56666666554443322211 112234455555655554321 111
Q ss_pred H-HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHH
Q 040440 184 E-WQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKL 262 (355)
Q Consensus 184 ~-~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~ 262 (355)
. ....++.++...+.|+.|+..+++++..+|++...+..+|..+...|+ .+.+...+.+++.. .....+.
T Consensus 86 ~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~-~~~A~~~~~~al~~--------~~~~~~~ 156 (497)
T d1ya0a1 86 EVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTH-TSAIVKPQSSSCSY--------ICQHCLV 156 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTC--------------------------------CCHHHHH--------HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCC-HHHHHHHHHHHhCC--------CHHHHHH
Confidence 1 122334555567778888888888888899999999999999999888 44444444444433 1235788
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHH
Q 040440 263 LIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHPYREYFV 333 (355)
Q Consensus 263 ~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~ 333 (355)
.+|.++...|++++|+.+|+++++++|++..+|+.+|.++...|++.+|+.+|.+++...|..+.....+.
T Consensus 157 ~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~ 227 (497)
T d1ya0a1 157 HLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQ 227 (497)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999987755544443
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.62 E-value=1.9e-14 Score=122.73 Aligned_cols=197 Identities=16% Similarity=0.076 Sum_probs=126.0
Q ss_pred hccCCHHHHHHHHHHHHHcCCCC-----HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCc------hHHHHHHHHHHH
Q 040440 126 REDVSYEEKEKEIEQHLAANPND-----IEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNE------FEWQLLKAQVQS 194 (355)
Q Consensus 126 ~~~~~~~~A~~~~~~~l~~~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~------~~~~~~la~~~~ 194 (355)
...+++++|+..++++++..|++ ..++..+|.+|...|++++|+..|+++++..+.. ...+..++.++.
T Consensus 23 ~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (366)
T d1hz4a_ 23 INDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILF 102 (366)
T ss_dssp HHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHH
Confidence 33457788888888888777765 3466677778888888888888887777653211 224556666666
Q ss_pred HcCCHHHHHHHHHHHHhhCC--------CCHHHHHHHHHHHhccCchHHHH-----------------------------
Q 040440 195 YAGESEAAIKGFEEILRKDP--------LRVEAYHGLVMAYDGSDKKLNEV----------------------------- 237 (355)
Q Consensus 195 ~~g~~~~A~~~~~~~~~~~p--------~~~~~~~~l~~~~~~~~~~~~~a----------------------------- 237 (355)
..|++..|...+.+++...+ .....+..++.++...|+. +.+
T Consensus 103 ~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (366)
T d1hz4a_ 103 AQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARL-DEAEASARSGIEVLSSYQPQQQLQCLAMLIQC 181 (366)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcch-hhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHH
Confidence 77777777777666665421 1122344455555555542 111
Q ss_pred --------------------------------------------HHHHHHHHHHHHh-hc----cCCchHHHHHHHHHHH
Q 040440 238 --------------------------------------------EKRIEKAMERCKK-EK----KKSDLRDFKLLIAQIK 268 (355)
Q Consensus 238 --------------------------------------------~~~~~~Al~~~~~-~~----~~~~~~~~~~~la~~~ 268 (355)
.+.+++|...+++ .. ..+.....+..+|.++
T Consensus 182 ~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~ 261 (366)
T d1hz4a_ 182 SLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQ 261 (366)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHH
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHH
Confidence 1234455555554 11 1122344566788888
Q ss_pred HHccCHHHHHHHHHHHHHh------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 040440 269 VMESKHSEALRVYEELVKE------EPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVP 323 (355)
Q Consensus 269 ~~~g~~~~A~~~~~~~l~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p 323 (355)
...|++++|+..+++++.. .|....++..+|.+|...|++++|++.+++++++.+
T Consensus 262 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~ 322 (366)
T d1hz4a_ 262 ILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN 322 (366)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Confidence 8888888888888888743 233456788888889999999999999988888654
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.61 E-value=2.2e-15 Score=118.49 Aligned_cols=102 Identities=18% Similarity=0.094 Sum_probs=88.7
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 040440 148 DIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAY 227 (355)
Q Consensus 148 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 227 (355)
++..+...|..++..|+|++|+..|+++++.+|+++.+|..+|.+|...|++++|+..|+++++++|++..+|+.+|.+|
T Consensus 3 ~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~ 82 (201)
T d2c2la1 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 82 (201)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 45667788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCchHHHHHHHHHHHHHHHHh
Q 040440 228 DGSDKKLNEVEKRIEKAMERCKK 250 (355)
Q Consensus 228 ~~~~~~~~~a~~~~~~Al~~~~~ 250 (355)
...|+ ++.|...+++|+++...
T Consensus 83 ~~l~~-~~~A~~~~~~al~l~p~ 104 (201)
T d2c2la1 83 LEMES-YDEAIANLQRAYSLAKE 104 (201)
T ss_dssp HHTTC-HHHHHHHHHHHHHHHHH
T ss_pred HHCCC-HHHHHHHHHHHHHhCcc
Confidence 99988 66666666666665443
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.61 E-value=2.2e-14 Score=111.55 Aligned_cols=129 Identities=9% Similarity=0.055 Sum_probs=111.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hccCCchHHHHHHH
Q 040440 186 QLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLI 264 (355)
Q Consensus 186 ~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~l 264 (355)
++..|..+...|+|++|++.|++ +.+.++.+|+++|.+|...|+ +++|++.|++ +..+|....++..+
T Consensus 8 l~~~g~~~~~~~d~~~Al~~~~~---i~~~~~~~~~nlG~~~~~~g~--------~~~A~~~~~kAl~ldp~~~~a~~~~ 76 (192)
T d1hh8a_ 8 LWNEGVLAADKKDWKGALDAFSA---VQDPHSRICFNIGCMYTILKN--------MTEAEKAFTRSINRDKHLAVAYFQR 76 (192)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHT---SSSCCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHh---cCCCCHHHHHHHHHHHHHcCC--------chhHHHHHHHHHHHhhhhhhhHHHH
Confidence 44679999999999999999986 456788999999999999999 5555555555 44589999999999
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCC----------------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 040440 265 AQIKVMESKHSEALRVYEELVKEEPRD----------------FRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRN 325 (355)
Q Consensus 265 a~~~~~~g~~~~A~~~~~~~l~~~~~~----------------~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~ 325 (355)
|.+|..+|++++|+..|++++...+.+ ..+++++|.++..+|++++|.+.+++++.+.|+.
T Consensus 77 g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~ 153 (192)
T d1hh8a_ 77 GMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 153 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred HHHHHhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 999999999999999999999865533 3678899999999999999999999999998874
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.58 E-value=2.8e-15 Score=117.81 Aligned_cols=94 Identities=15% Similarity=0.067 Sum_probs=88.8
Q ss_pred hhccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHH
Q 040440 125 AREDVSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIK 204 (355)
Q Consensus 125 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 204 (355)
.+..++|++|+..|+++++.+|+++.+|..+|.+|...|++++|+..|+++++++|++..+|+.+|.+|..+|++++|+.
T Consensus 14 ~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~~~l~~~~~A~~ 93 (201)
T d2c2la1 14 LFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIA 93 (201)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 45667999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCCHH
Q 040440 205 GFEEILRKDPLRVE 218 (355)
Q Consensus 205 ~~~~~~~~~p~~~~ 218 (355)
.|+++++++|++..
T Consensus 94 ~~~~al~l~p~~~~ 107 (201)
T d2c2la1 94 NLQRAYSLAKEQRL 107 (201)
T ss_dssp HHHHHHHHHHHTTC
T ss_pred HHHHHHHhCcccHH
Confidence 99999998875443
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.58 E-value=4e-14 Score=107.82 Aligned_cols=125 Identities=12% Similarity=0.063 Sum_probs=93.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHH
Q 040440 185 WQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLI 264 (355)
Q Consensus 185 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~l 264 (355)
.+...|..++..|+|++|+..|++++...|........ ....+.. ....++.++
T Consensus 15 ~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~------------------~~~~~~~--------~~~~~~~nl 68 (170)
T d1p5qa1 15 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNE------------------EAQKAQA--------LRLASHLNL 68 (170)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSH------------------HHHHHHH--------HHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchH------------------HHhhhch--------hHHHHHHHH
Confidence 45567777888888888888888888776543221100 0000000 112356778
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHH
Q 040440 265 AQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHPYREYFVDN 335 (355)
Q Consensus 265 a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~ 335 (355)
|.+|.++|++++|+..+++++.++|++..+++.+|.+|..+|++++|+..|+++++++|++......+..+
T Consensus 69 a~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~ 139 (170)
T d1p5qa1 69 AMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVC 139 (170)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999987766555444
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.58 E-value=2.3e-14 Score=103.69 Aligned_cols=114 Identities=18% Similarity=0.169 Sum_probs=95.8
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhc
Q 040440 150 EALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDG 229 (355)
Q Consensus 150 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 229 (355)
..+..+|..++..|+|++|+.+|+++++++|++..++..+|.+|..+|+|++|+..++++++++|++...+..++.+|..
T Consensus 5 ~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~ 84 (128)
T d1elra_ 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (128)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 45678999999999999999999999999999999999999999999999999999999999998888777777766643
Q ss_pred cCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHH
Q 040440 230 SDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQ 298 (355)
Q Consensus 230 ~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l 298 (355)
+|.++...+++++|+.+|++++..++ +......+
T Consensus 85 ----------------------------------lg~~~~~~~~~~~A~~~~~kal~~~~-~~~~~~~l 118 (128)
T d1elra_ 85 ----------------------------------IGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKC 118 (128)
T ss_dssp ----------------------------------HHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHH
T ss_pred ----------------------------------HHHHHHHhCCHHHHHHHHHHHHhcCC-CHHHHHHH
Confidence 46677788899999999999888776 34443333
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.57 E-value=7.7e-15 Score=122.28 Aligned_cols=197 Identities=12% Similarity=0.043 Sum_probs=141.3
Q ss_pred hccC-CHHHHHHHHHHHHHcC------CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCc------hHHHHHHHHH
Q 040440 126 REDV-SYEEKEKEIEQHLAAN------PNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNE------FEWQLLKAQV 192 (355)
Q Consensus 126 ~~~~-~~~~A~~~~~~~l~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~------~~~~~~la~~ 192 (355)
|... +|++|++.|+++++.. +....++..+|.+|...|++++|++.+++++++.+.. ..++..+|.+
T Consensus 47 y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~ 126 (290)
T d1qqea_ 47 YRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEI 126 (290)
T ss_dssp HHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHh
Confidence 5555 9999999999998852 2235689999999999999999999999999874433 3467788888
Q ss_pred HHH-cCCHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhc-cCCchHHHHHHH
Q 040440 193 QSY-AGESEAAIKGFEEILRKDPL------RVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEK-KKSDLRDFKLLI 264 (355)
Q Consensus 193 ~~~-~g~~~~A~~~~~~~~~~~p~------~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~-~~~~~~~~~~~l 264 (355)
+.. .|++++|++.|++++++.+. ...++..+|.++...|+ +++|...+++++....... ........+...
T Consensus 127 ~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~-y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (290)
T d1qqea_ 127 LENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQ-YIEASDIYSKLIKSSMGNRLSQWSLKDYFLKK 205 (290)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcCh-HHHHHHHHHHHHHhCccchhhhhhHHHHHHHH
Confidence 865 69999999999999987432 24558889999999999 3333333333333322211 112233556788
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCCh-----HHHHHHHHHHHH--cCCHHHHHHHHHHHHHhCC
Q 040440 265 AQIKVMESKHSEALRVYEELVKEEPRDF-----RPYLCQGIIYTL--LRKKDEAEKQFEKFRRLVP 323 (355)
Q Consensus 265 a~~~~~~g~~~~A~~~~~~~l~~~~~~~-----~~~~~l~~~~~~--~g~~~~A~~~~~~~l~~~p 323 (355)
+.++...|+++.|...++++++.+|... .....++.++.. .+.+++|+..|+++.+++|
T Consensus 206 ~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~~lD~ 271 (290)
T d1qqea_ 206 GLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDK 271 (290)
T ss_dssp HHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCH
Confidence 8999999999999999999999887533 234455555544 3568999999987776654
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.55 E-value=2.6e-14 Score=101.90 Aligned_cols=109 Identities=14% Similarity=0.069 Sum_probs=62.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hccCCch--HHHHHHH
Q 040440 188 LKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDL--RDFKLLI 264 (355)
Q Consensus 188 ~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~--~~~~~~l 264 (355)
.++..+...+++++|++.|++++..+|+++.+++++|.++...++ . +.+++|+.++++ ....+.. ..+++.+
T Consensus 4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~-~----~d~~~Ai~~l~~~l~~~~~~~~~~~~~~L 78 (122)
T d1nzna_ 4 AVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRY-N----DDIRKGIVLLEELLPKGSKEEQRDYVFYL 78 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSS-H----HHHHHHHHHHHHHTTTSCHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcc-h----HHHHHHHHHHHHHHhccCCchHHHHHHHH
Confidence 455667788888888888888888888888888888888876554 0 113334444433 1111111 2234444
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 040440 265 AQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGII 301 (355)
Q Consensus 265 a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~ 301 (355)
|.+|...|++++|+++|+++++.+|++..+...++.+
T Consensus 79 g~~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I 115 (122)
T d1nzna_ 79 AVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLI 115 (122)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHH
Confidence 4444445555555555555555555544444444433
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=99.55 E-value=1e-13 Score=103.60 Aligned_cols=125 Identities=15% Similarity=0.054 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHH
Q 040440 185 WQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLI 264 (355)
Q Consensus 185 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~l 264 (355)
.+...|..++..|+|.+|+..|++++...+...... . .........+ ...++.++
T Consensus 19 ~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~-----------~---~~~~~~~~~~-----------~~~~~~Nl 73 (153)
T d2fbna1 19 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWD-----------D---QILLDKKKNI-----------EISCNLNL 73 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCC-----------C---HHHHHHHHHH-----------HHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhh-----------h---HHHHHhhhhH-----------HHHHHhhH
Confidence 355667777888888888888888887654321100 0 0000001111 12467789
Q ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHH
Q 040440 265 AQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHPYREYFVD 334 (355)
Q Consensus 265 a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~ 334 (355)
|.+|.++|++++|+..++++++.+|.+..+|+.+|.++..+|++++|+..|+++++++|++......+..
T Consensus 74 a~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~ 143 (153)
T d2fbna1 74 ATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYEL 143 (153)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999776554433
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.55 E-value=1.2e-13 Score=105.08 Aligned_cols=108 Identities=14% Similarity=0.156 Sum_probs=97.9
Q ss_pred hhccCCHHHHHHHHHHHHHcCCCC---------------HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHH
Q 040440 125 AREDVSYEEKEKEIEQHLAANPND---------------IEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLK 189 (355)
Q Consensus 125 ~~~~~~~~~A~~~~~~~l~~~p~~---------------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 189 (355)
.|..++|++|+..|++++...|.. ..++.++|.+|.+.|++++|+..+++++.++|++..+++.+
T Consensus 23 ~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~ 102 (170)
T d1p5qa1 23 YFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRR 102 (170)
T ss_dssp HHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHH
Confidence 466679999999999999987653 24577899999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCc
Q 040440 190 AQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDK 232 (355)
Q Consensus 190 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 232 (355)
|.++..+|++++|+..|+++++++|++..+...++.+....+.
T Consensus 103 g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~ 145 (170)
T d1p5qa1 103 GEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRR 145 (170)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999888766554
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=99.55 E-value=4.8e-14 Score=99.31 Aligned_cols=91 Identities=15% Similarity=0.079 Sum_probs=76.0
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccC
Q 040440 152 LQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSD 231 (355)
Q Consensus 152 ~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 231 (355)
++.+|..+.+.|++++|+..|++++..+|++..+|..+|.++...|++++|+..|+++++++|++..++..+|.+|...|
T Consensus 19 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g 98 (112)
T d1hxia_ 19 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH 98 (112)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCC
Confidence 56778888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred chHHHHHHHHHHHHHHHHh
Q 040440 232 KKLNEVEKRIEKAMERCKK 250 (355)
Q Consensus 232 ~~~~~a~~~~~~Al~~~~~ 250 (355)
+ +++|++.+++
T Consensus 99 ~--------~~~A~~~l~~ 109 (112)
T d1hxia_ 99 N--------ANAALASLRA 109 (112)
T ss_dssp H--------HHHHHHHHHH
T ss_pred C--------HHHHHHHHHH
Confidence 7 6666666654
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.53 E-value=1.9e-14 Score=102.61 Aligned_cols=101 Identities=14% Similarity=0.112 Sum_probs=90.6
Q ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc---cCHHHHHHHHHHHHHcCCCc--hHHHHHHHHHHHHcCCHHHHH
Q 040440 129 VSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKS---QKLVEAVDVIDRLIELEPNE--FEWQLLKAQVQSYAGESEAAI 203 (355)
Q Consensus 129 ~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~---g~~~~A~~~~~~~~~~~~~~--~~~~~~la~~~~~~g~~~~A~ 203 (355)
.++++|++.|++++..+|+++.+++++|.+++.. +++++|+..|++++..+|.+ ..+++.+|.+|...|++++|+
T Consensus 13 ~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~~~g~~~~A~ 92 (122)
T d1nzna_ 13 EDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 92 (122)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHhhhHHHH
Confidence 4899999999999999999999999999999864 55667999999999988755 458999999999999999999
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHhc
Q 040440 204 KGFEEILRKDPLRVEAYHGLVMAYDG 229 (355)
Q Consensus 204 ~~~~~~~~~~p~~~~~~~~l~~~~~~ 229 (355)
++|+++++++|++..+...+..+..+
T Consensus 93 ~~~~~aL~~~P~~~~A~~l~~~I~~~ 118 (122)
T d1nzna_ 93 KYVRGLLQTEPQNNQAKELERLIDKA 118 (122)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcCCHHHHHHHHHHHHH
Confidence 99999999999999998877766544
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.52 E-value=3.2e-14 Score=105.14 Aligned_cols=104 Identities=16% Similarity=0.206 Sum_probs=92.8
Q ss_pred hccC-CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc----------cCHHHHHHHHHHHHHcCCCchHHHHHHHHHHH
Q 040440 126 REDV-SYEEKEKEIEQHLAANPNDIEALQTLMEVRIKS----------QKLVEAVDVIDRLIELEPNEFEWQLLKAQVQS 194 (355)
Q Consensus 126 ~~~~-~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~----------g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 194 (355)
+++. .|++|+..|+++++.+|++++++..+|.++... +.+++|+..|+++++++|++..+|+.+|.+|.
T Consensus 7 ~~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~ 86 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYT 86 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHH
Confidence 4444 789999999999999999999999999999854 55689999999999999999999999999998
Q ss_pred HcCC-----------HHHHHHHHHHHHhhCCCCHHHHHHHHHHHhc
Q 040440 195 YAGE-----------SEAAIKGFEEILRKDPLRVEAYHGLVMAYDG 229 (355)
Q Consensus 195 ~~g~-----------~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 229 (355)
.+|+ +++|+++|+++++++|++...+..++.+...
T Consensus 87 ~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~ka 132 (145)
T d1zu2a1 87 SFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKA 132 (145)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTH
T ss_pred HcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHHHH
Confidence 7754 7899999999999999999998888876543
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.52 E-value=2.8e-13 Score=103.08 Aligned_cols=124 Identities=15% Similarity=0.119 Sum_probs=92.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHH
Q 040440 187 LLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQ 266 (355)
Q Consensus 187 ~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~ 266 (355)
...|..+...|+|++|+..|+++++..+.... ... ..+. ....+....++..+|.
T Consensus 31 ~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~-----------~~~--------~~~~------~~~~~~~~~~~~nla~ 85 (169)
T d1ihga1 31 KNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRA-----------AAE--------DADG------AKLQPVALSCVLNIGA 85 (169)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH-----------HSC--------HHHH------GGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhh-----------hhh--------hHHH------HHhChhhHHHHHHHHH
Confidence 34566667777777777777776653211000 000 0000 1223455677888999
Q ss_pred HHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHH
Q 040440 267 IKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHPYREYFVDN 335 (355)
Q Consensus 267 ~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~ 335 (355)
+|.++|++++|+..|+++++++|+++.+|+.+|.++..+|++++|+..|+++++++|++......+..+
T Consensus 86 ~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~ 154 (169)
T d1ihga1 86 CKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKV 154 (169)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999997665554443
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.50 E-value=3.1e-14 Score=105.19 Aligned_cols=123 Identities=15% Similarity=0.064 Sum_probs=98.1
Q ss_pred HHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHc----------CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 040440 158 VRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYA----------GESEAAIKGFEEILRKDPLRVEAYHGLVMAY 227 (355)
Q Consensus 158 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~----------g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 227 (355)
.+.+.+.|++|+..|+++++.+|+++.+++.+|.++... +.+++|+..|+++++++|++..+++.+|.+|
T Consensus 6 ~~~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y 85 (145)
T d1zu2a1 6 EFDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAY 85 (145)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHH
Confidence 355678899999999999999999999999999998754 4568899999999999999999999999999
Q ss_pred hccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCC
Q 040440 228 DGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRK 307 (355)
Q Consensus 228 ~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~ 307 (355)
...|+ +. +......+++++|+++|+++++.+|++...+..++.+....+.
T Consensus 86 ~~~g~--------~~----------------------~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~ka~~~ 135 (145)
T d1zu2a1 86 TSFAF--------LT----------------------PDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAPQL 135 (145)
T ss_dssp HHHHH--------HC----------------------CCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTHHHH
T ss_pred HHccc--------ch----------------------hhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHHHHHHH
Confidence 77654 11 1111223467889999999999999998888888877644433
Q ss_pred HHH
Q 040440 308 KDE 310 (355)
Q Consensus 308 ~~~ 310 (355)
+.+
T Consensus 136 ~~e 138 (145)
T d1zu2a1 136 HAE 138 (145)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=99.50 E-value=1e-13 Score=97.65 Aligned_cols=85 Identities=16% Similarity=0.147 Sum_probs=82.0
Q ss_pred hccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHH
Q 040440 126 REDVSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKG 205 (355)
Q Consensus 126 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 205 (355)
+..+++++|+..+++++..+|+++.+|..+|.++...|++++|+..|+++++++|++..++..+|.+|...|++++|++.
T Consensus 27 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~~~~A~~~ 106 (112)
T d1hxia_ 27 LKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALAS 106 (112)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCCCHHHHHHH
Confidence 45569999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHH
Q 040440 206 FEEIL 210 (355)
Q Consensus 206 ~~~~~ 210 (355)
+++.+
T Consensus 107 l~~~l 111 (112)
T d1hxia_ 107 LRAWL 111 (112)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 99876
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=99.49 E-value=3.7e-13 Score=100.45 Aligned_cols=107 Identities=12% Similarity=0.101 Sum_probs=95.2
Q ss_pred hhhccCCHHHHHHHHHHHHHcCCCC----------------HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHH
Q 040440 124 SAREDVSYEEKEKEIEQHLAANPND----------------IEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQL 187 (355)
Q Consensus 124 ~~~~~~~~~~A~~~~~~~l~~~p~~----------------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 187 (355)
..+..++|.+|+..|++++...+.. ..++.++|.+|.++|++++|+..++++++++|.+..+|+
T Consensus 26 ~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~ 105 (153)
T d2fbna1 26 EFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALY 105 (153)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhccccccchhhhhhH
Confidence 4466779999999999999865432 235778999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhcc
Q 040440 188 LKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGS 230 (355)
Q Consensus 188 ~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 230 (355)
.+|.++..+|++++|+..|+++++++|++..+...+..+..+.
T Consensus 106 ~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~kl 148 (153)
T d2fbna1 106 KLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKL 148 (153)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred HhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999988887776543
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=99.48 E-value=6.6e-13 Score=100.76 Aligned_cols=126 Identities=17% Similarity=0.113 Sum_probs=93.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHH
Q 040440 184 EWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLL 263 (355)
Q Consensus 184 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~ 263 (355)
..+...|..++..|+|.+|+..|++++...+..... .. + ...... .....++.+
T Consensus 16 ~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~-----------~~--~-----~~~~~~--------~~~~~~~~N 69 (168)
T d1kt1a1 16 AIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGL-----------SE--K-----ESKASE--------SFLLAAFLN 69 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSC-----------CH--H-----HHHHHH--------HHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcc-----------ch--h-----hhhhcc--------hhHHHHHHh
Confidence 345567777778888888888887777653321100 00 0 000000 112345778
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHHHHHH
Q 040440 264 IAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHPYREYFVDN 335 (355)
Q Consensus 264 la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~ 335 (355)
+|.+|..+|++++|+..+++++.++|.+..+++.+|.++..+|++++|+..|+++++++|++......+..+
T Consensus 70 la~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~ 141 (168)
T d1kt1a1 70 LAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMC 141 (168)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHH
T ss_pred HHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999999999999999999999987665544443
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.46 E-value=3.7e-13 Score=102.35 Aligned_cols=106 Identities=15% Similarity=0.128 Sum_probs=95.1
Q ss_pred hccCCHHHHHHHHHHHHHc----------------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHH
Q 040440 126 REDVSYEEKEKEIEQHLAA----------------NPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLK 189 (355)
Q Consensus 126 ~~~~~~~~A~~~~~~~l~~----------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 189 (355)
+..++|++|+..|+++++. +|....++.++|.+|.+.|++++|+..++++++++|++..+|+.+
T Consensus 38 ~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~ 117 (169)
T d1ihga1 38 FKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRR 117 (169)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhH
Confidence 4456999999999998753 455677889999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccC
Q 040440 190 AQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSD 231 (355)
Q Consensus 190 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 231 (355)
|.++..+|++++|+..|+++++++|++..+...+..+.....
T Consensus 118 g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~ 159 (169)
T d1ihga1 118 AQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIK 159 (169)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999888888775543
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=99.46 E-value=1.5e-12 Score=98.66 Aligned_cols=108 Identities=17% Similarity=0.182 Sum_probs=95.6
Q ss_pred hhccCCHHHHHHHHHHHHHcCCCC---------------HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHH
Q 040440 125 AREDVSYEEKEKEIEQHLAANPND---------------IEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLK 189 (355)
Q Consensus 125 ~~~~~~~~~A~~~~~~~l~~~p~~---------------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 189 (355)
.+..++|++|+..|++++...+.. ..++.++|.+|...|++++|+..+++++.++|++..+++.+
T Consensus 25 ~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~ 104 (168)
T d1kt1a1 25 YFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRR 104 (168)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHH
Confidence 466679999999999999743321 24567899999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCc
Q 040440 190 AQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDK 232 (355)
Q Consensus 190 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 232 (355)
|.++..+|++++|+..|++++.++|++..+...++.+....+.
T Consensus 105 ~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~ 147 (168)
T d1kt1a1 105 GEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKE 147 (168)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999888888766544
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.44 E-value=1.3e-11 Score=104.63 Aligned_cols=176 Identities=13% Similarity=-0.008 Sum_probs=146.1
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCch-----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------
Q 040440 148 DIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEF-----EWQLLKAQVQSYAGESEAAIKGFEEILRKDPLR------ 216 (355)
Q Consensus 148 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~------ 216 (355)
.++.....|.++...|++++|+.+++++++..|++. .++..+|.++...|++++|+..|+++++..+..
T Consensus 11 ~ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 90 (366)
T d1hz4a_ 11 HAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYA 90 (366)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHH
Confidence 356677789999999999999999999999988764 368889999999999999999999999875322
Q ss_pred HHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhh--ccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---
Q 040440 217 VEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKE--KKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRD--- 291 (355)
Q Consensus 217 ~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~--- 291 (355)
...+..++.++...|+ +..+...+.+++...... .........+..+|.++...|+++.+...+++++...+..
T Consensus 91 ~~~~~~~~~~~~~~~~-~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 169 (366)
T d1hz4a_ 91 LWSLIQQSEILFAQGF-LQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQ 169 (366)
T ss_dssp HHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGG
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhh
Confidence 3456788889999988 888888888888888773 2334445567889999999999999999999999876642
Q ss_pred --hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 040440 292 --FRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPR 324 (355)
Q Consensus 292 --~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~ 324 (355)
...+..++.++...|++.++...+.++......
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~ 204 (366)
T d1hz4a_ 170 QQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGN 204 (366)
T ss_dssp GGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 456778899999999999999999998886543
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.38 E-value=2.8e-12 Score=92.46 Aligned_cols=95 Identities=11% Similarity=0.121 Sum_probs=84.0
Q ss_pred hhccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchH-------HHHHHHHHHHHcC
Q 040440 125 AREDVSYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFE-------WQLLKAQVQSYAG 197 (355)
Q Consensus 125 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~-------~~~~la~~~~~~g 197 (355)
.+..++|++|+.+|+++++.+|++..++.++|.+|...|+|++|+..++++++++|++.. ++..+|.++...+
T Consensus 14 ~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~~~~~~~ 93 (128)
T d1elra_ 14 AYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEE 93 (128)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHhC
Confidence 355669999999999999999999999999999999999999999999999999876543 5677888889999
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHH
Q 040440 198 ESEAAIKGFEEILRKDPLRVEAY 220 (355)
Q Consensus 198 ~~~~A~~~~~~~~~~~p~~~~~~ 220 (355)
++++|+.+|++++..+++ .+..
T Consensus 94 ~~~~A~~~~~kal~~~~~-~~~~ 115 (128)
T d1elra_ 94 KYKDAIHFYNKSLAEHRT-PDVL 115 (128)
T ss_dssp CHHHHHHHHHHHHHHCCC-HHHH
T ss_pred CHHHHHHHHHHHHhcCCC-HHHH
Confidence 999999999999998764 4443
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.27 E-value=2e-11 Score=82.72 Aligned_cols=80 Identities=13% Similarity=0.003 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC-------chHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Q 040440 149 IEALQTLMEVRIKSQKLVEAVDVIDRLIELEPN-------EFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYH 221 (355)
Q Consensus 149 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 221 (355)
++-++.+|.++++.|+|++|+.+|++++++.|. ...++..+|.++.+.|++++|+..|+++++++|++..++.
T Consensus 5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~ 84 (95)
T d1tjca_ 5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG 84 (95)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHH
Confidence 556789999999999999999999999987443 3568999999999999999999999999999999999999
Q ss_pred HHHHHHh
Q 040440 222 GLVMAYD 228 (355)
Q Consensus 222 ~l~~~~~ 228 (355)
+++.+..
T Consensus 85 Nl~~~~~ 91 (95)
T d1tjca_ 85 NLKYFEY 91 (95)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8876543
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=99.25 E-value=2.6e-11 Score=98.23 Aligned_cols=131 Identities=8% Similarity=0.032 Sum_probs=99.9
Q ss_pred HHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHH
Q 040440 157 EVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNE 236 (355)
Q Consensus 157 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~ 236 (355)
.-.+..|++++|+..++++++.+|++...+..++.+++..|++++|+..|+++++++|++...+..++.++...+.
T Consensus 4 ~~aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~---- 79 (264)
T d1zbpa1 4 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQA---- 79 (264)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHH----
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccc----
Confidence 3456778888888888888888888888888888888888888888888888888888888888888777655544
Q ss_pred HHHHHHHHHHHHHh--hccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHH
Q 040440 237 VEKRIEKAMERCKK--EKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPY 295 (355)
Q Consensus 237 a~~~~~~Al~~~~~--~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~ 295 (355)
.+++...... ....+.....+...+..+...|++++|.+.++++.+..|.....+
T Consensus 80 ----~~~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~~ 136 (264)
T d1zbpa1 80 ----RKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLA 136 (264)
T ss_dssp ----HHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEEE
T ss_pred ----cHHHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCccc
Confidence 4444333222 223455556667778888888999999999999988888765443
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=99.23 E-value=6.1e-11 Score=88.46 Aligned_cols=118 Identities=14% Similarity=0.058 Sum_probs=87.1
Q ss_pred HHHHHH--HHHHHHccCHHHHHHHHHHHHHcCCCch------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 040440 150 EALQTL--MEVRIKSQKLVEAVDVIDRLIELEPNEF------------EWQLLKAQVQSYAGESEAAIKGFEEILRKDPL 215 (355)
Q Consensus 150 ~~~~~l--a~~~~~~g~~~~A~~~~~~~~~~~~~~~------------~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~ 215 (355)
.++..+ |..++..|+|++|+..|++++++.|+.+ ..|.++|.+|..+|++++|+..+++++.+.+.
T Consensus 8 ~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~ 87 (156)
T d2hr2a1 8 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR 87 (156)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccc
Confidence 344444 7788888999999999999998866532 46888999999999999999999999976431
Q ss_pred -----------CHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhcc-CCchHHHHHHHHHHH
Q 040440 216 -----------RVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKK-KSDLRDFKLLIAQIK 268 (355)
Q Consensus 216 -----------~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~-~~~~~~~~~~la~~~ 268 (355)
...+++.+|.+|...|+ +++|...|++|+++..+... ......+...++.-+
T Consensus 88 ~~~~~~~~~~~~~~a~~~~g~~~~~lg~-~eeA~~~~~~Al~l~~~~~~~~~~~~~~~~~~~~~l 151 (156)
T d2hr2a1 88 RGELNQDEGKLWISAVYSRALALDGLGR-GAEAMPEFKKVVEMIEERKGETPGKERMMEVAIDRI 151 (156)
T ss_dssp HCCTTSTHHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHCCSCCTTHHHHHHHHHHHH
T ss_pred cccccccccchhHHHHhhhHHHHHHHHH-HHHHHHHHHHHHHhhHHhhchHHHHHHHHHHHHHHH
Confidence 23457888999999998 88888888888888877333 233333444344333
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=99.21 E-value=4.6e-09 Score=85.33 Aligned_cols=190 Identities=13% Similarity=0.090 Sum_probs=131.7
Q ss_pred hccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHH----cC
Q 040440 126 REDVSYEEKEKEIEQHLAANPNDIEALQTLMEVRIK----SQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSY----AG 197 (355)
Q Consensus 126 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~----~g 197 (355)
+..+|+++|++.|+++.+. ++..+++.+|.+|.. ..++..|..+++.+... .++.+...+|.++.. .+
T Consensus 13 ~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~--~~~~a~~~l~~~~~~~~~~~~ 88 (265)
T d1ouva_ 13 YKEKDFTQAKKYFEKACDL--KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL--NYSNGCHLLGNLYYSGQGVSQ 88 (265)
T ss_dssp HHTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCC
T ss_pred HHCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccc--cccchhhccccccccccccch
Confidence 5556999999999999875 589999999999997 77999999999998854 466777888877765 46
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCc---hHHHHHHHH-----------------------------HHHH
Q 040440 198 ESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDK---KLNEVEKRI-----------------------------EKAM 245 (355)
Q Consensus 198 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~---~~~~a~~~~-----------------------------~~Al 245 (355)
+.+.|...++++....+ ......++..+..... ....+...+ ..+.
T Consensus 89 ~~~~a~~~~~~a~~~g~--~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~ 166 (265)
T d1ouva_ 89 NTNKALQYYSKACDLKY--AEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDAGRGTPKDLKKAL 166 (265)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred hhHHHHHHHhhhhhhhh--hhHHHhhcccccCCCcccchhHHHHHHhhhhhcccccchhhhhhhhhccCCCcccccccch
Confidence 88899999998887543 3444444444432111 111111111 1112
Q ss_pred HHHHhhccCCchHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH----cCCHHHHHHHHHH
Q 040440 246 ERCKKEKKKSDLRDFKLLIAQIKVM----ESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTL----LRKKDEAEKQFEK 317 (355)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~ 317 (355)
..++... ...+....+.+|.+|.. .+++++|+.+|+++.+. .++.+++.||.+|.. .+++++|.++|++
T Consensus 167 ~~~~~a~-~~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~k 243 (265)
T d1ouva_ 167 ASYDKAC-DLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACEL--ENGGGCFNLGAMQYNGEGVTRNEKQAIENFKK 243 (265)
T ss_dssp HHHHHHH-HTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHH
T ss_pred hhhhccc-cccccccccchhhhcccCcccccchhhhhhhHhhhhcc--cCHHHHHHHHHHHHcCCCCccCHHHHHHHHHH
Confidence 2222211 23356677788888876 56888888888888776 467888888888875 3478888889888
Q ss_pred HHHhCCC
Q 040440 318 FRRLVPR 324 (355)
Q Consensus 318 ~l~~~p~ 324 (355)
+......
T Consensus 244 Aa~~g~~ 250 (265)
T d1ouva_ 244 GCKLGAK 250 (265)
T ss_dssp HHHHTCH
T ss_pred HHHCcCH
Confidence 8887653
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.21 E-value=3.8e-11 Score=107.14 Aligned_cols=136 Identities=6% Similarity=-0.122 Sum_probs=51.0
Q ss_pred HHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHH
Q 040440 158 VRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEV 237 (355)
Q Consensus 158 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a 237 (355)
++...+.|+.|+..+++.+..+|++...+..+|..+...|++++|+..+++++..++ ..++..+|.++...++
T Consensus 95 l~~a~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~LG~l~~~~~~----- 167 (497)
T d1ya0a1 95 LEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYIC--QHCLVHLGDIARYRNQ----- 167 (497)
T ss_dssp HHHHHHHHHHHHHHHTC-------------------------------CCHHHHHHH--HHHHHHHHHHHHHTTC-----
T ss_pred HHHHHHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCH--HHHHHHHHHHHHHccc-----
Confidence 333445555555555555555555555555555555555555555555555554433 2344455555555555
Q ss_pred HHHHHHHHHHHHh-hccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 040440 238 EKRIEKAMERCKK-EKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYT 303 (355)
Q Consensus 238 ~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~ 303 (355)
+++|+..+++ ....|++...+..+|.++...|++.+|+.+|.+++...|..+.++.+++.++.
T Consensus 168 ---~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~ 231 (497)
T d1ya0a1 168 ---TSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALS 231 (497)
T ss_dssp ---HHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 2233332222 22245555555555555555555555555555555555555555555544443
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=99.18 E-value=1.1e-10 Score=86.99 Aligned_cols=101 Identities=18% Similarity=0.102 Sum_probs=76.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCC------------HHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhh-ccC
Q 040440 188 LKAQVQSYAGESEAAIKGFEEILRKDPLR------------VEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKE-KKK 254 (355)
Q Consensus 188 ~la~~~~~~g~~~~A~~~~~~~~~~~p~~------------~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~-~~~ 254 (355)
..|..++..|+|++|+..|++++++.|+. ..++.++|.+|...|+ ++.+...+++++.++.+. ...
T Consensus 14 ~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~-~~~A~~~~~~al~~~~~~~~~~ 92 (156)
T d2hr2a1 14 SDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRS-FDEALHSADKALHYFNRRGELN 92 (156)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHCCTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCc-cchhhHhhhhhhhccccccccc
Confidence 34788889999999999999999987653 3568899999999999 888888888888888763 222
Q ss_pred C----chHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Q 040440 255 S----DLRDFKLLIAQIKVMESKHSEALRVYEELVKEEP 289 (355)
Q Consensus 255 ~----~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~ 289 (355)
+ ....+++.+|.+|..+|++++|+..|++++++.|
T Consensus 93 ~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~ 131 (156)
T d2hr2a1 93 QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIE 131 (156)
T ss_dssp STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred ccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 2 2233466677777777777777777777776544
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.16 E-value=3.6e-10 Score=76.29 Aligned_cols=88 Identities=13% Similarity=-0.000 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHH
Q 040440 184 EWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLL 263 (355)
Q Consensus 184 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~ 263 (355)
+.++.+|.++...|+|++|+.+|++++++.|.+. ........++..
T Consensus 6 ddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~----------------------------------~~~~~~~~~l~~ 51 (95)
T d1tjca_ 6 EDSFELGKVAYTEADYYHTELWMEQALRQLDEGE----------------------------------ISTIDKVSVLDY 51 (95)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC----------------------------------CCSSCHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhh----------------------------------ccCccHHHHHHH
Confidence 3455666666666666666666666665544321 123445677888
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc
Q 040440 264 IAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLL 305 (355)
Q Consensus 264 la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~ 305 (355)
+|.++.+.|++++|+..|+++++++|++..++.+++.+...+
T Consensus 52 Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~Nl~~~~~~l 93 (95)
T d1tjca_ 52 LSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLKYFEYIM 93 (95)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999998776544
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.08 E-value=1e-09 Score=83.25 Aligned_cols=118 Identities=15% Similarity=0.003 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHH
Q 040440 184 EWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLL 263 (355)
Q Consensus 184 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~ 263 (355)
..+...|......|++++|+..|.+++.+.+++....... +... ..+...+ .+....++..
T Consensus 12 ~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~-------~~w~------~~~r~~l------~~~~~~a~~~ 72 (179)
T d2ff4a2 12 VAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRD-------FQFV------EPFATAL------VEDKVLAHTA 72 (179)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTT-------STTH------HHHHHHH------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcc-------hHHH------HHHHHHH------HHHHHHHHHH
Confidence 3566677777778888888888888887766543221100 0000 0111111 1223456778
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 040440 264 IAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRR 320 (355)
Q Consensus 264 la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 320 (355)
++.++...|++++|+.++++++..+|.+..+|..++.++...|++.+|+..|+++..
T Consensus 73 la~~~~~~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~ 129 (179)
T d2ff4a2 73 KAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 129 (179)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999999999999999833
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.98 E-value=2.3e-07 Score=74.98 Aligned_cols=168 Identities=15% Similarity=0.093 Sum_probs=126.7
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 040440 148 DIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSY----AGESEAAIKGFEEILRKDPLRVEAYHGL 223 (355)
Q Consensus 148 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~l 223 (355)
|+.+++.+|..+...||+++|+++|+++.+. ++..+++.+|.+|.. ..++..|..+++.+... .++.+...+
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~--~~~~a~~~l 76 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL--KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL--NYSNGCHLL 76 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccc--cccchhhcc
Confidence 5789999999999999999999999999875 578899999999987 67999999999998874 467777778
Q ss_pred HHHHhccC---chHHHHHHHHHHHHH-----------------------------HHHhhccCCchHHHHHHHHHHHHH-
Q 040440 224 VMAYDGSD---KKLNEVEKRIEKAME-----------------------------RCKKEKKKSDLRDFKLLIAQIKVM- 270 (355)
Q Consensus 224 ~~~~~~~~---~~~~~a~~~~~~Al~-----------------------------~~~~~~~~~~~~~~~~~la~~~~~- 270 (355)
+.++.... ...+.+...++.+.+ .+.. .........+..+|.+|..
T Consensus 77 ~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~L~~~~~~~ 155 (265)
T d1ouva_ 77 GNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTK-ACDLNDGDGCTILGSLYDAG 155 (265)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHT
T ss_pred ccccccccccchhhHHHHHHHhhhhhhhhhhHHHhhcccccCCCcccchhHHHHHHhhh-hhcccccchhhhhhhhhccC
Confidence 77765421 224444444444332 1111 0112344566778888876
Q ss_pred ---ccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhC
Q 040440 271 ---ESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTL----LRKKDEAEKQFEKFRRLV 322 (355)
Q Consensus 271 ---~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~l~~~ 322 (355)
..+...+..+++.+.+ ..+..+.+.+|.+|.. ..++++|+.+|+++.+..
T Consensus 156 ~~~~~~~~~~~~~~~~a~~--~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g 212 (265)
T d1ouva_ 156 RGTPKDLKKALASYDKACD--LKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE 212 (265)
T ss_dssp SSSCCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT
T ss_pred CCcccccccchhhhhcccc--ccccccccchhhhcccCcccccchhhhhhhHhhhhccc
Confidence 4667788888888765 3588999999999987 678999999999998874
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=98.96 E-value=7.2e-10 Score=89.57 Aligned_cols=128 Identities=9% Similarity=0.014 Sum_probs=104.3
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHH
Q 040440 191 QVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK-EKKKSDLRDFKLLIAQIKV 269 (355)
Q Consensus 191 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~-~~~~~~~~~~~~~la~~~~ 269 (355)
.-....|++++|+..++++++.+|++...+..++.+++..|+ +++|+..++. ....|+....+..++.++.
T Consensus 4 ~~aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~--------~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~ 75 (264)
T d1zbpa1 4 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGD--------FERADEQLMQSIKLFPEYLPGASQLRHLVK 75 (264)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTC--------HHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 345678999999999999999999999999999999999999 7777777766 4568888899888998887
Q ss_pred HccCHHHHHHHHHHHHH-hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Q 040440 270 MESKHSEALRVYEELVK-EEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNH 326 (355)
Q Consensus 270 ~~g~~~~A~~~~~~~l~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~ 326 (355)
..+..+++...+.+... ..|.....+...+.++...|++++|...++++.+..|+..
T Consensus 76 a~~~~~~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~ 133 (264)
T d1zbpa1 76 AAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKG 133 (264)
T ss_dssp HHHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCC
T ss_pred hccccHHHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCC
Confidence 77776666554433222 2344556677788999999999999999999999998763
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.92 E-value=5.6e-08 Score=73.47 Aligned_cols=100 Identities=16% Similarity=0.123 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCc----------------------hHHHHHHHHHHHHcCCHHHHHHHHH
Q 040440 150 EALQTLMEVRIKSQKLVEAVDVIDRLIELEPNE----------------------FEWQLLKAQVQSYAGESEAAIKGFE 207 (355)
Q Consensus 150 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~----------------------~~~~~~la~~~~~~g~~~~A~~~~~ 207 (355)
+.+...|......|++++|+..|.+++.+.+.. ..++..++.++...|++++|+..++
T Consensus 12 ~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~~~~ 91 (179)
T d2ff4a2 12 VAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELE 91 (179)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHH
Confidence 345556666666677777777777766664432 2457888999999999999999999
Q ss_pred HHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHh
Q 040440 208 EILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKK 250 (355)
Q Consensus 208 ~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~ 250 (355)
++++.+|.+..+|..++.++...|+ ..+|+..|+++...+.+
T Consensus 92 ~al~~~P~~e~~~~~l~~al~~~Gr-~~eAl~~y~~~~~~L~~ 133 (179)
T d2ff4a2 92 ALTFEHPYREPLWTQLITAYYLSDR-QSDALGAYRRVKTTLAD 133 (179)
T ss_dssp HHHHHSTTCHHHHHHHHHHHHTTTC-HHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCccHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999 66666666666666554
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.66 E-value=6.1e-07 Score=61.69 Aligned_cols=78 Identities=9% Similarity=-0.022 Sum_probs=66.5
Q ss_pred chHHHHHHHHHHHHHcc---CHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChhHHHH
Q 040440 256 DLRDFKLLIAQIKVMES---KHSEALRVYEELVKEEPRD-FRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVPRNHPYREY 331 (355)
Q Consensus 256 ~~~~~~~~la~~~~~~g---~~~~A~~~~~~~l~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~ 331 (355)
......+.+|+++.+.. +.++|+..++++++.+|.+ .+.++.+|.+|.++|++++|+.+++++++++|++.....+
T Consensus 33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~L 112 (124)
T d2pqrb1 33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGAL 112 (124)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHHH
Confidence 34678889999998764 5679999999999998866 4799999999999999999999999999999999666544
Q ss_pred HH
Q 040440 332 FV 333 (355)
Q Consensus 332 ~~ 333 (355)
..
T Consensus 113 ~~ 114 (124)
T d2pqrb1 113 KS 114 (124)
T ss_dssp HH
T ss_pred HH
Confidence 33
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.49 E-value=4.8e-07 Score=62.23 Aligned_cols=80 Identities=13% Similarity=-0.024 Sum_probs=68.7
Q ss_pred CHHHHHHHHHHHHHc---cCHHHHHHHHHHHHHcCCCch-HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 040440 148 DIEALQTLMEVRIKS---QKLVEAVDVIDRLIELEPNEF-EWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGL 223 (355)
Q Consensus 148 ~~~~~~~la~~~~~~---g~~~~A~~~~~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 223 (355)
.....+..|.++.+. ++.++++.++++++..+|.+. +.++.+|..|.+.|+|++|+.+++++++++|++..+....
T Consensus 34 s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~L~ 113 (124)
T d2pqrb1 34 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALK 113 (124)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHHHH
Confidence 478889999999865 456789999999999888664 7999999999999999999999999999999999886554
Q ss_pred HHHH
Q 040440 224 VMAY 227 (355)
Q Consensus 224 ~~~~ 227 (355)
-.+.
T Consensus 114 ~~Ie 117 (124)
T d2pqrb1 114 SMVE 117 (124)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=98.25 E-value=1e-05 Score=57.41 Aligned_cols=115 Identities=17% Similarity=0.103 Sum_probs=71.9
Q ss_pred cCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHH
Q 040440 163 QKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIE 242 (355)
Q Consensus 163 g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~ 242 (355)
.|+++|+.+|+++.+.. +..+.+.++. ....++++|+.+|+++.+. +++.+.+.++.+|.....
T Consensus 7 kd~~~A~~~~~kaa~~g--~~~a~~~l~~--~~~~~~~~a~~~~~~aa~~--g~~~a~~~Lg~~y~~g~~---------- 70 (133)
T d1klxa_ 7 KDLKKAIQYYVKACELN--EMFGCLSLVS--NSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKY---------- 70 (133)
T ss_dssp HHHHHHHHHHHHHHHTT--CTTHHHHHHT--CTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSS----------
T ss_pred cCHHHHHHHHHHHHHCC--Chhhhhhhcc--ccccCHHHHHHHHhhhhcc--cchhhhhhHHHhhhhccc----------
Confidence 36677777777777653 3344444543 2345666677666666553 455566666655543110
Q ss_pred HHHHHHHhhccCCchHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH----cCCHHHHHHHHHHH
Q 040440 243 KAMERCKKEKKKSDLRDFKLLIAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTL----LRKKDEAEKQFEKF 318 (355)
Q Consensus 243 ~Al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~ 318 (355)
...++++|+++|+++.+. .++.+.+.+|.+|.. ..+.++|..+|+++
T Consensus 71 ---------------------------~~~d~~~A~~~~~~aa~~--g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~A 121 (133)
T d1klxa_ 71 ---------------------------VKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKA 121 (133)
T ss_dssp ---------------------------SCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred ---------------------------cchhhHHHHHHHhhhhcc--CcchHHHHHHHHHHcCCccCCCHHHHHHHHHHH
Confidence 034677777788777664 467777778887776 45778888888887
Q ss_pred HHhC
Q 040440 319 RRLV 322 (355)
Q Consensus 319 l~~~ 322 (355)
.+..
T Consensus 122 a~~G 125 (133)
T d1klxa_ 122 CRLG 125 (133)
T ss_dssp HHTT
T ss_pred HHCC
Confidence 7764
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=98.24 E-value=1.7e-05 Score=56.30 Aligned_cols=92 Identities=8% Similarity=-0.054 Sum_probs=76.5
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHH----cCCHHHHHHH
Q 040440 130 SYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSY----AGESEAAIKG 205 (355)
Q Consensus 130 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~ 205 (355)
|+++|++.|+++.+.. +..+.+.++. ....+.++|+.+++++.+. .++.+.+.+|.+|.. ..++++|+++
T Consensus 8 d~~~A~~~~~kaa~~g--~~~a~~~l~~--~~~~~~~~a~~~~~~aa~~--g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~ 81 (133)
T d1klxa_ 8 DLKKAIQYYVKACELN--EMFGCLSLVS--NSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQY 81 (133)
T ss_dssp HHHHHHHHHHHHHHTT--CTTHHHHHHT--CTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHH
T ss_pred CHHHHHHHHHHHHHCC--Chhhhhhhcc--ccccCHHHHHHHHhhhhcc--cchhhhhhHHHhhhhccccchhhHHHHHH
Confidence 7899999999998864 5566666664 3567899999999999865 578889999998876 4679999999
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHhc
Q 040440 206 FEEILRKDPLRVEAYHGLVMAYDG 229 (355)
Q Consensus 206 ~~~~~~~~p~~~~~~~~l~~~~~~ 229 (355)
|+++.+. .++.+.+.++.+|..
T Consensus 82 ~~~aa~~--g~~~a~~~Lg~~y~~ 103 (133)
T d1klxa_ 82 YSKACGL--NDQDGCLILGYKQYA 103 (133)
T ss_dssp HHHHHHT--TCHHHHHHHHHHHHH
T ss_pred Hhhhhcc--CcchHHHHHHHHHHc
Confidence 9999875 578889999999876
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=95.47 E-value=0.59 Score=39.30 Aligned_cols=185 Identities=10% Similarity=-0.064 Sum_probs=112.4
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHH----HHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHH
Q 040440 130 SYEEKEKEIEQHLAANPNDIEALQTLMEV----RIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKG 205 (355)
Q Consensus 130 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~----~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 205 (355)
+.+.|...+.......+.....+...... ....+..+.+...+........+.......++ .....+++..+...
T Consensus 229 d~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~w~~~-~al~~~~~~~~~~~ 307 (450)
T d1qsaa1 229 DAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIERRVR-MALGTGDRRGLNTW 307 (450)
T ss_dssp CHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHHHHHH-HHHHHTCHHHHHHH
T ss_pred ChhHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccccchHHHHHHHH-HHHHcCChHHHHHH
Confidence 77778888877776555554433333222 23456677777777776655444433333333 34566888888887
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHH---HH-----HhhccC-----------Cch---HHHHHH
Q 040440 206 FEEILRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAME---RC-----KKEKKK-----------SDL---RDFKLL 263 (355)
Q Consensus 206 ~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~---~~-----~~~~~~-----------~~~---~~~~~~ 263 (355)
++.+...........|.+|..+...|+ .+.+...+..+.. ++ +++... ... ..-...
T Consensus 308 ~~~l~~~~~~~~r~~YW~gRa~~~~G~-~~~A~~~~~~~a~~~~fYG~LAa~~Lg~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (450)
T d1qsaa1 308 LARLPMEAKEKDEWRYWQADLLLERGR-EAEAKEILHQLMQQRGFYPMVAAQRIGEEYELKIDKAPQNVDSALTQGPEMA 386 (450)
T ss_dssp HHHSCTTGGGSHHHHHHHHHHHHHTTC-HHHHHHHHHHHHTSCSHHHHHHHHHTTCCCCCCCCCCCSCCCCHHHHSHHHH
T ss_pred HHhcCcccccHHHHHHHHHHHHHHcCC-hhhHHHHHHHHhcCCChHHHHHHHHcCCCCCCCcCCCCccHHHhhhcChHHH
Confidence 776543333456677888888888888 4445444444332 11 011100 000 011234
Q ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 040440 264 IAQIKVMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKF 318 (355)
Q Consensus 264 la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 318 (355)
.+..+...|+...|...+..++.. .+..-...++.+..+.|.++.|+....++
T Consensus 387 ra~~L~~~g~~~~A~~e~~~l~~~--~~~~~~~~la~lA~~~g~~~~aI~a~~~~ 439 (450)
T d1qsaa1 387 RVRELMYWNLDNTARSEWANLVKS--KSKTEQAQLARYAFNNQWWDLSVQATIAG 439 (450)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTT--CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHcCCchHHHHHHHHHHhC--CCHHHHHHHHHHHHHCCChhHHHHHHHHH
Confidence 566777888999998888877643 35666777888888899998888776655
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=95.21 E-value=0.36 Score=38.91 Aligned_cols=30 Identities=7% Similarity=-0.090 Sum_probs=14.1
Q ss_pred HHHHHHHHHh-hccCCchHHHHHHHHHHHHH
Q 040440 241 IEKAMERCKK-EKKKSDLRDFKLLIAQIKVM 270 (355)
Q Consensus 241 ~~~Al~~~~~-~~~~~~~~~~~~~la~~~~~ 270 (355)
+++.+.+++. ..........+..++.+|.+
T Consensus 115 ~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak 145 (336)
T d1b89a_ 115 FEELITMLEAALGLERAHMGMFTELAILYSK 145 (336)
T ss_dssp HHHHHHHHHHHTTSTTCCHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHcCCccchHHHHHHHHHHHH
Confidence 4555555554 22234444455555555544
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=95.09 E-value=0.63 Score=37.39 Aligned_cols=172 Identities=10% Similarity=0.006 Sum_probs=102.5
Q ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 040440 130 SYEEKEKEIEQHLAANPNDIEALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFEWQLLKAQVQSYAGESEAAIKGFEEI 209 (355)
Q Consensus 130 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 209 (355)
+++.|.+.+.+. ++...|..+...+.+..+..-+... ... .-.+++-...+...|...|.+++.+.+++..
T Consensus 55 ~~~~avd~~~k~-----~~~~~~k~~~~~l~~~~e~~la~i~-~~~---~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~ 125 (336)
T d1b89a_ 55 EYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMC-GLH---IVVHADELEELINYYQDRGYFEELITMLEAA 125 (336)
T ss_dssp CHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHHHHHHT-TTT---TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHc-----CCHHHHHHHHHHHHhCcHHHHHHHH-HHH---hhcCHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 555555555544 4667777777777776666443221 100 1123344455677788999999999999999
Q ss_pred HhhCCCCHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHhhccCCch---------HHHHHHHHHHHHHccCHHHHHHH
Q 040440 210 LRKDPLRVEAYHGLVMAYDGSDKKLNEVEKRIEKAMERCKKEKKKSDL---------RDFKLLIAQIKVMESKHSEALRV 280 (355)
Q Consensus 210 ~~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~---------~~~~~~la~~~~~~g~~~~A~~~ 280 (355)
+...+.+...+..++.+|.+.+. ++-++.++.....-+. ...|-.+..+|.+.|++++|+..
T Consensus 126 ~~~~~~~~~~~~~L~~lyak~~~---------~kl~e~l~~~s~~y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~ 196 (336)
T d1b89a_ 126 LGLERAHMGMFTELAILYSKFKP---------QKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT 196 (336)
T ss_dssp TTSTTCCHHHHHHHHHHHHTTCH---------HHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHH
T ss_pred HcCCccchHHHHHHHHHHHHhCh---------HHHHHHHHhccccCCHHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHH
Confidence 98888888888899999888764 3333333331111111 11244567788888999988776
Q ss_pred HHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 040440 281 YEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRRLVP 323 (355)
Q Consensus 281 ~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p 323 (355)
.-. .+.+.+-....-.++.+.++.+..-+...-.++..|
T Consensus 197 ~i~----~~~~~~~~~~f~e~~~k~~N~e~~~~~i~~yL~~~p 235 (336)
T d1b89a_ 197 MMN----HPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFKP 235 (336)
T ss_dssp HHH----STTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHHCG
T ss_pred HHH----cchhhhhHHHHHHHHHccCChHHHHHHHHHHHHcCH
Confidence 644 222333333344445555555554444444444444
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=93.74 E-value=1.6 Score=36.49 Aligned_cols=120 Identities=10% Similarity=0.015 Sum_probs=76.1
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH----HhccCchHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHH
Q 040440 193 QSYAGESEAAIKGFEEILRKDPLRVEAYHGLVMA----YDGSDKKLNEVEKRIEKAMERCKKEKKKSDLRDFKLLIAQIK 268 (355)
Q Consensus 193 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~----~~~~~~~~~~a~~~~~~Al~~~~~~~~~~~~~~~~~~la~~~ 268 (355)
.....+.+.|...+.......+.....+...... ....+. .+.+............+......++...
T Consensus 224 rla~~d~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~--------~~~a~~~~~~~~~~~~~~~~~~w~~~~a 295 (450)
T d1qsaa1 224 SVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDV--------TDEQAKWRDDAIMRSQSTSLIERRVRMA 295 (450)
T ss_dssp HHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTC--------CHHHHHHHHHHHHTCCCHHHHHHHHHHH
T ss_pred HHhccChhHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHcCc--------hHHHHHHHHhhcccccchHHHHHHHHHH
Confidence 3344678888888888777665555443332222 222333 3445555544323333334433344445
Q ss_pred HHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 040440 269 VMESKHSEALRVYEELVKEEPRDFRPYLCQGIIYTLLRKKDEAEKQFEKFRR 320 (355)
Q Consensus 269 ~~~g~~~~A~~~~~~~l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 320 (355)
...+++..+...++.+-..........+.+|..+...|+.++|..+|..+..
T Consensus 296 l~~~~~~~~~~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~ 347 (450)
T d1qsaa1 296 LGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (450)
T ss_dssp HHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHcCChHHHHHHHHhcCcccccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc
Confidence 6678999999888775433334567789999999999999999999998864
|
| >d1o9da_ a.118.7.1 (A:) 14-3-3-like protein C {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: 14-3-3 protein family: 14-3-3 protein domain: 14-3-3-like protein C species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=88.08 E-value=4 Score=30.51 Aligned_cols=171 Identities=15% Similarity=0.118 Sum_probs=93.1
Q ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCC-chHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCC--CCHHHH
Q 040440 147 NDIEALQTLMEVRIKSQKLVEAVDVIDRLIEL--EPN-EFEWQLLKAQVQS-YAGESEAAIKGFEEILRKDP--LRVEAY 220 (355)
Q Consensus 147 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~-~~~~~~~la~~~~-~~g~~~~A~~~~~~~~~~~p--~~~~~~ 220 (355)
..-+-+..+|.+.-+.++|++.+.+.+++++. +++ +.+-...+..+|- ..|....+...+........ .+.. .
T Consensus 2 ~~Re~lv~~AklaeqaeRy~dm~~~mk~v~~~~~~~~Ls~eERnLlsvayKn~i~~~R~s~r~l~~~e~k~~~~~~~~-~ 80 (236)
T d1o9da_ 2 TAREENVYMAKLAEQAERYEEMVEFMEKVSNSLGSEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNEE-H 80 (236)
T ss_dssp CHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHH-H
T ss_pred CcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHccCChH-H
Confidence 33455677888888999999999999999887 443 3333444444433 23555566666655443321 1221 1
Q ss_pred HHHHHHHhccCchHHHHHHHHHHHHHHHHh--hcc--CCchHHH-HHHHHHHHHHc-----c-----CHHHHHHHHHHHH
Q 040440 221 HGLVMAYDGSDKKLNEVEKRIEKAMERCKK--EKK--KSDLRDF-KLLIAQIKVME-----S-----KHSEALRVYEELV 285 (355)
Q Consensus 221 ~~l~~~~~~~~~~~~~a~~~~~~Al~~~~~--~~~--~~~~~~~-~~~la~~~~~~-----g-----~~~~A~~~~~~~l 285 (355)
..+..-|.. +-.++.....++.+++++. ... .+....+ +-..|..|... | -.++|...|++++
T Consensus 81 ~~~i~~yk~--kie~EL~~~C~~ii~lid~~Lip~~~~~eskvFy~KmkgDyyRYlaE~~~~~e~~~~~~~a~~aY~~A~ 158 (236)
T d1o9da_ 81 VNSIREYRS--KIENELSKICDGILKLLDAKLIPSAASGDSKVFYLKMKGDYHRYLAEFKTGAERKEAAESTLTAYKAAQ 158 (236)
T ss_dssp HHHHHHHHH--HHHHHHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH--HHHHHHHHHHHHHHHHHHHhccccCCCchhHHHHHHhhchHHHHHHHhcCchhHHHHHHHHHHHHHHHH
Confidence 122222211 1133444556667777665 121 1222222 33345554322 2 2456788888876
Q ss_pred H-----hCCCChH---HHHHHHHHHH-HcCCHHHHHHHHHHHHH
Q 040440 286 K-----EEPRDFR---PYLCQGIIYT-LLRKKDEAEKQFEKFRR 320 (355)
Q Consensus 286 ~-----~~~~~~~---~~~~l~~~~~-~~g~~~~A~~~~~~~l~ 320 (355)
. +.|.++. ...+.+..++ .+|+.++|.+..++++.
T Consensus 159 ~~a~~~l~pt~PirLgLaLN~SVF~yEi~~~~~~A~~lak~afd 202 (236)
T d1o9da_ 159 DIATTELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFD 202 (236)
T ss_dssp HHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCcHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4 4565553 2344444444 57999999988888765
|
| >d2o02a1 a.118.7.1 (A:1-230) zeta isoform {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: 14-3-3 protein family: 14-3-3 protein domain: zeta isoform species: Cow (Bos taurus) [TaxId: 9913]
Probab=84.23 E-value=6.4 Score=29.20 Aligned_cols=168 Identities=11% Similarity=0.080 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCchH-HHHHHHHHHH-HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 040440 150 EALQTLMEVRIKSQKLVEAVDVIDRLIELEPNEFE-WQLLKAQVQS-YAGESEAAIKGFEEILRKDPLRVEAYHGLVMAY 227 (355)
Q Consensus 150 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~la~~~~-~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 227 (355)
+-+..+|.+.-+.++|++.+.+.+++++.++.-.. -...+..+|- ..|....+...+....+....+... ..+..-|
T Consensus 4 e~~v~~Aklaeq~eRy~dm~~~mk~~~~~~~eLt~eERnLlsvayKn~i~~rR~s~R~l~~ie~k~~~~~~~-~~~i~~y 82 (230)
T d2o02a1 4 NELVQKAKLAEQAERYDDMAACMKSVTEQGAELSNEERNLLSVAYKNVVGARRSSWRVVSSIEQKTEGAEKK-QQMAREY 82 (230)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------C-HHHHHHH
T ss_pred HHHHHHHHHHHHHcCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHcCcchh-hHHHHHH
Confidence 34567788888899999999999999988775333 2333333332 3456666666665544433222111 1111112
Q ss_pred hccCchHHHHHHHHHHHHHHHHh--hcc--CCchHHH-HHHHHHHHHHc----------cCHHHHHHHHHHHHH-----h
Q 040440 228 DGSDKKLNEVEKRIEKAMERCKK--EKK--KSDLRDF-KLLIAQIKVME----------SKHSEALRVYEELVK-----E 287 (355)
Q Consensus 228 ~~~~~~~~~a~~~~~~Al~~~~~--~~~--~~~~~~~-~~~la~~~~~~----------g~~~~A~~~~~~~l~-----~ 287 (355)
.. .-.++.....++.+.+++. ... .+....+ +-..|+.|... .-.++|...|+++++ +
T Consensus 83 k~--kie~EL~~~C~dil~lid~~Lip~~~~~eskvFy~KmkgDy~RY~aE~~~~~e~~~~~~~a~~aY~~A~~~A~~~L 160 (230)
T d2o02a1 83 RE--KIETELRDICNDVLSLLEKFLIPNASQAESKVFYLKMKGDYYRYLAEVAAGDDKKGIVDQSQQAYQEAFEISKKEM 160 (230)
T ss_dssp HH--HHHHHHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HH--HHHHHHHHHHcchHHHHHhhcCccCCCchhhhhHHHhcccHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 11 1123334456666666665 111 1222222 33335544322 223578888888875 3
Q ss_pred CCCChH---HHHHHH-HHHHHcCCHHHHHHHHHHHHH
Q 040440 288 EPRDFR---PYLCQG-IIYTLLRKKDEAEKQFEKFRR 320 (355)
Q Consensus 288 ~~~~~~---~~~~l~-~~~~~~g~~~~A~~~~~~~l~ 320 (355)
.|.++. ...+.+ ..|..+|+.++|.+..++++.
T Consensus 161 ~~t~pirLgL~LN~SVF~YEi~~~~~~A~~lak~afd 197 (230)
T d2o02a1 161 QPTHPIRLGLALNFSVFYYEILNSPEKACSLAKTAFD 197 (230)
T ss_dssp CTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455543 223333 344568999999998888875
|