Citrus Sinensis ID: 040495
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 443 | 2.2.26 [Sep-21-2011] | |||||||
| C0LGT6 | 1031 | LRR receptor-like serine/ | yes | no | 0.934 | 0.401 | 0.446 | 2e-81 | |
| C0LGP4 | 1010 | Probable LRR receptor-lik | no | no | 0.950 | 0.416 | 0.420 | 3e-81 | |
| Q9SD62 | 1025 | Putative receptor-like pr | no | no | 0.972 | 0.420 | 0.427 | 2e-77 | |
| Q9FL28 | 1173 | LRR receptor-like serine/ | no | no | 0.882 | 0.333 | 0.323 | 5e-53 | |
| O22938 | 890 | Leucine-rich repeat recep | no | no | 0.963 | 0.479 | 0.331 | 1e-51 | |
| P93194 | 1109 | Receptor-like protein kin | N/A | no | 0.920 | 0.367 | 0.322 | 3e-51 | |
| Q9SHI2 | 1101 | Leucine-rich repeat recep | no | no | 0.893 | 0.359 | 0.352 | 4e-51 | |
| O49318 | 1124 | Probable leucine-rich rep | no | no | 0.862 | 0.339 | 0.335 | 1e-50 | |
| Q9C9H7 | 847 | Receptor-like protein 12 | no | no | 0.900 | 0.471 | 0.334 | 5e-49 | |
| C0LGS2 | 1136 | Probable LRR receptor-lik | no | no | 0.932 | 0.363 | 0.303 | 3e-48 |
| >sp|C0LGT6|EFR_ARATH LRR receptor-like serine/threonine-protein kinase EFR OS=Arabidopsis thaliana GN=EFR PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 303 bits (776), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 186/417 (44%), Positives = 264/417 (63%), Gaps = 3/417 (0%)
Query: 30 SNETDRLALLAIKLQLHD--PLGVTSSWNNSMSLCQWTGVTCGRRHQRVTRLDLRNQSIG 87
SNETD ALL K Q+ + V +SWN+S C W GVTCGRR +RV L+L +
Sbjct: 27 SNETDMQALLEFKSQVSENNKREVLASWNHSSPFCNWIGVTCGRRRERVISLNLGGFKLT 86
Query: 88 GPLSPYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSN 147
G +SP +GNLSFLR +NLA+N F IP ++GRL L+ L +S N G IP++LS S
Sbjct: 87 GVISPSIGNLSFLRLLNLADNSFGSTIPQKVGRLFRLQYLNMSYNLLEGRIPSSLSNCSR 146
Query: 148 LIELSVDTNYLVGEIPSAIGSLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILW 207
L + + +N+L +PS +GSL KL L + N++TG PAS+GNL+SL D N +
Sbjct: 147 LSTVDLSSNHLGHGVPSELGSLSKLAILDLSKNNLTGNFPASLGNLTSLQKLDFAYNQMR 206
Query: 208 GRI-DSLVQLRNLRLLDIAFNHFSGMIPPPIFNISSLEVISLSENRFTGSLPVDAGVNLP 266
G I D + +L + IA N FSG PP ++NISSLE +SL++N F+G+L D G LP
Sbjct: 207 GEIPDEVARLTQMVFFQIALNSFSGGFPPALYNISSLESLSLADNSFSGNLRADFGYLLP 266
Query: 267 NLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNL 326
NLR+L N FTG+IP +L+N S LE + S N SG + + F +L+NL +L + N+L
Sbjct: 267 NLRRLLLGTNQFTGAIPKTLANISSLERFDISSNYLSGSIPLSFGKLRNLWWLGIRNNSL 326
Query: 327 GTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNRISGTIP 386
G +++ L+FI +ANC++LE L NR G LP S+AN S+T+ + +G+N ISGTIP
Sbjct: 327 GNNSSSGLEFIGAVANCTQLEYLDVGYNRLGGELPASIANLSTTLTSLFLGQNLISGTIP 386
Query: 387 PGIRSHANLNWLTMDSNLFTGTIPPVIGELKNLQLLDLGGNFLQGSIPSSLGNLTLL 443
I + +L L++++N+ +G +P G+L NLQ++DL N + G IPS GN+T L
Sbjct: 387 HDIGNLVSLQELSLETNMLSGELPVSFGKLLNLQVVDLYSNAISGEIPSYFGNMTRL 443
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Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of elongation factor Tu (EF-Tu), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Reduces transformation by Rhizobium radiobacter probably by inducing plant defense during the interaction. Binding to the effector AvrPto1 from P.syringae blocks the downstream plant immune response. Arabidopsis thaliana (taxid: 3702) EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1 |
| >sp|C0LGP4|Y3475_ARATH Probable LRR receptor-like serine/threonine-protein kinase At3g47570 OS=Arabidopsis thaliana GN=At3g47570 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 303 bits (775), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 180/428 (42%), Positives = 263/428 (61%), Gaps = 7/428 (1%)
Query: 18 LLLHSHKTICANSNETDRLALLAIKLQL-HDPLGVTSSWNNSMSLCQWTGVTCGRRHQRV 76
+LL +H ++ETDR ALL K Q+ D V SSWN+S LC W GVTCGR+++RV
Sbjct: 13 MLLETH----GFTDETDRQALLQFKSQVSEDKRVVLSSWNHSFPLCNWKGVTCGRKNKRV 68
Query: 77 TRLDLRNQSIGGPLSPYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSG 136
T L+L +GG +SP +GNLSFL ++L N F G IP ++G+L+ LE L + N G
Sbjct: 69 THLELGRLQLGGVISPSIGNLSFLVSLDLYENFFGGTIPQEVGQLSRLEYLDMGINYLRG 128
Query: 137 TIPTNLSRRSNLIELSVDTNYLVGEIPSAIGSLFKLERLFIFHNHITGQLPASIGNLSSL 196
IP L S L+ L +D+N L G +PS +GSL L +L ++ N++ G+LP S+GNL+ L
Sbjct: 129 PIPLGLYNCSRLLNLRLDSNRLGGSVPSELGSLTNLVQLNLYGNNMRGKLPTSLGNLTLL 188
Query: 197 LAFDVRENILWGRIDS-LVQLRNLRLLDIAFNHFSGMIPPPIFNISSLEVISLSENRFTG 255
+ N L G I S + QL + L + N+FSG+ PP ++N+SSL+++ + N F+G
Sbjct: 189 EQLALSHNNLEGEIPSDVAQLTQIWSLQLVANNFSGVFPPALYNLSSLKLLGIGYNHFSG 248
Query: 256 SLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKN 315
L D G+ LPNL + GN FTGSIP +LSN S LE + + N +G + F + N
Sbjct: 249 RLRPDLGILLPNLLSFNMGGNYFTGSIPTTLSNISTLERLGMNENNLTGSIPT-FGNVPN 307
Query: 316 LSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIA 375
L L + N+LG+ ++ +L+F+ L NC++LE L RNR G LP S+AN S+ + +
Sbjct: 308 LKLLFLHTNSLGSDSSRDLEFLTSLTNCTQLETLGIGRNRLGGDLPISIANLSAKLVTLD 367
Query: 376 MGRNRISGTIPPGIRSHANLNWLTMDSNLFTGTIPPVIGELKNLQLLDLGGNFLQGSIPS 435
+G ISG+IP I + NL L +D N+ +G +P +G+L NL+ L L N L G IP+
Sbjct: 368 LGGTLISGSIPYDIGNLINLQKLILDQNMLSGPLPTSLGKLLNLRYLSLFSNRLSGGIPA 427
Query: 436 SLGNLTLL 443
+GN+T+L
Sbjct: 428 FIGNMTML 435
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Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q9SD62|Y3471_ARATH Putative receptor-like protein kinase At3g47110 OS=Arabidopsis thaliana GN=At3g47110 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 290 bits (742), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 187/437 (42%), Positives = 272/437 (62%), Gaps = 6/437 (1%)
Query: 11 LATLSLSLLLHSHKTICANS----NETDRLALLAIKLQLHDPLGVT-SSWNNSMSLCQWT 65
++ L +S+ L +CA + ETD+ ALL K Q+ + V SWN+S+ LC WT
Sbjct: 13 VSALLVSVSLEHSDMVCAQTIRLTEETDKQALLEFKSQVSETSRVVLGSWNDSLPLCSWT 72
Query: 66 GVTCGRRHQRVTRLDLRNQSIGGPLSPYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLE 125
GV CG +H+RVT +DL + G +SP+VGNLSFLR +NLA+N F G IP ++G L L+
Sbjct: 73 GVKCGLKHRRVTGVDLGGLKLTGVVSPFVGNLSFLRSLNLADNFFHGAIPSEVGNLFRLQ 132
Query: 126 GLVLSNNSFSGTIPTNLSRRSNLIELSVDTNYLVGEIPSAIGSLFKLERLFIFHNHITGQ 185
L +SNN F G IP LS S+L L + +N+L +P GSL KL L + N++TG+
Sbjct: 133 YLNMSNNLFGGVIPVVLSNCSSLSTLDLSSNHLEQGVPLEFGSLSKLVLLSLGRNNLTGK 192
Query: 186 LPASIGNLSSLLAFDVRENILWGRI-DSLVQLRNLRLLDIAFNHFSGMIPPPIFNISSLE 244
PAS+GNL+SL D N + G I + +L+ + IA N F+G+ PPPI+N+SSL
Sbjct: 193 FPASLGNLTSLQMLDFIYNQIEGEIPGDIARLKQMIFFRIALNKFNGVFPPPIYNLSSLI 252
Query: 245 VISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSG 304
+S++ N F+G+L D G LPNL+ L N+FTG+IP +LSN S L ++ N +G
Sbjct: 253 FLSITGNSFSGTLRPDFGSLLPNLQILYMGINSFTGTIPETLSNISSLRQLDIPSNHLTG 312
Query: 305 RVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQSM 364
++ + F RL+NL L + N+LG ++ +LDF+ L NCS+L+ L N+ G LP +
Sbjct: 313 KIPLSFGRLQNLLLLGLNNNSLGNYSSGDLDFLGALTNCSQLQYLNVGFNKLGGQLPVFI 372
Query: 365 ANFSSTIKQIAMGRNRISGTIPPGIRSHANLNWLTMDSNLFTGTIPPVIGELKNLQLLDL 424
AN S+ + ++++G N ISG+IP GI + +L L + NL TG +PP +GEL L+ + L
Sbjct: 373 ANLSTQLTELSLGGNLISGSIPHGIGNLVSLQTLDLGENLLTGKLPPSLGELSELRKVLL 432
Query: 425 GGNFLQGSIPSSLGNLT 441
N L G IPSSLGN++
Sbjct: 433 YSNGLSGEIPSSLGNIS 449
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Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q9FL28|FLS2_ARATH LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 209 bits (531), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 150/464 (32%), Positives = 226/464 (48%), Gaps = 73/464 (15%)
Query: 46 HDPLGVTSSWN--NSMSLCQWTGVTCGRRHQRVTRLDLRNQSIGGPLSPYVGNLSFLRYI 103
+DPLGV S W S+ C WTG+TC V + L + + G LSP + NL++L+ +
Sbjct: 43 NDPLGVLSDWTIIGSLRHCNWTGITCDSTGH-VVSVSLLEKQLEGVLSPAIANLTYLQVL 101
Query: 104 NLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPT----------------------- 140
+L +N F G+IP +IG+L L L+L N FSG+IP+
Sbjct: 102 DLTSNSFTGKIPAEIGKLTELNQLILYLNYFSGSIPSGIWELKNIFYLDLRNNLLSGDVP 161
Query: 141 -NLSRRSNLIELSVDTNYLVGEIPSAIGSLFKLERLFIFHNHITGQLPASIGNLSSLLAF 199
+ + S+L+ + D N L G+IP +G L L+ NH+TG +P SIG L++L
Sbjct: 162 EEICKTSSLVLIGFDYNNLTGKIPECLGDLVHLQMFVAAGNHLTGSIPVSIGTLANLTDL 221
Query: 200 DVRENILWGRI-DSLVQLRNLRLLDIAFNHFSGMIPPPIFNISSLEVISLSENRFTGSLP 258
D+ N L G+I L NL+ L + N G IP I N SSL + L +N+ TG +P
Sbjct: 222 DLSGNQLTGKIPRDFGNLLNLQSLVLTENLLEGDIPAEIGNCSSLVQLELYDNQLTGKIP 281
Query: 259 VDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASR------------------------LEM 294
+ G NL L+ L N T SIP SL ++ LE+
Sbjct: 282 AELG-NLVQLQALRIYKNKLTSSIPSSLFRLTQLTHLGLSENHLVGPISEEIGFLESLEV 340
Query: 295 IEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANELDFI----------NLL---- 340
+ N F+G + L+NL+ L +G NN+ +L + NLL
Sbjct: 341 LTLHSNNFTGEFPQSITNLRNLTVLTVGFNNISGELPADLGLLTNLRNLSAHDNLLTGPI 400
Query: 341 ----ANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNRISGTIPPGIRSHANLN 396
+NC+ L+ L + N+ G +P+ + T I++GRN +G IP I + +NL
Sbjct: 401 PSSISNCTGLKLLDLSHNQMTGEIPRGFGRMNLTF--ISIGRNHFTGEIPDDIFNCSNLE 458
Query: 397 WLTMDSNLFTGTIPPVIGELKNLQLLDLGGNFLQGSIPSSLGNL 440
L++ N TGT+ P+IG+L+ L++L + N L G IP +GNL
Sbjct: 459 TLSVADNNLTGTLKPLIGKLQKLRILQVSYNSLTGPIPREIGNL 502
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Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of flagellin (flg22), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Flagellin-binding to the receptor is the first step to initiate the innate immune MAP kinase signaling cascade (MEKK1, MKK4/MKK5 and MPK3/MPK6), resulting in enhanced resistance against pathogens. Binding to the effector AvrPto1 from Pseudomonas syringae blocks the downstream plant immune response. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|O22938|Y2182_ARATH Leucine-rich repeat receptor-like tyrosine-protein kinase At2g41820 OS=Arabidopsis thaliana GN=At2g41820 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 204 bits (518), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 151/456 (33%), Positives = 218/456 (47%), Gaps = 29/456 (6%)
Query: 8 FCCLATLSLSLLLHSHKTICANSNETDRLALLAIKLQLHDPLGVTSSWNNSMSLCQWTGV 67
F C++ L + L S +C + +D L+AI +L GV +N C W G+
Sbjct: 3 FWCMSILLIVGFL-SKSELC-EAQLSDEATLVAINREL----GVPGWSSNGTDYCTWVGL 56
Query: 68 TCGRRHQRVTRLDLRNQSIGGPLSPYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGL 127
CG + V LDL + G ++ + +L L++++L+ N F G IP G L+ LE L
Sbjct: 57 KCGVNNSFVEMLDLSGLQLRGNVT-LISDLRSLKHLDLSGNNFNGRIPTSFGNLSELEFL 115
Query: 128 VLSNNSFSGTIPTNLSRRSNLIELSVDTNYLVGEIPSAIGSLFKLERLFIFHNHITGQLP 187
LS N F G IP + L ++ N LVGEIP + L +LE + N + G +P
Sbjct: 116 DLSLNRFVGAIPVEFGKLRGLRAFNISNNLLVGEIPDELKVLERLEEFQVSGNGLNGSIP 175
Query: 188 ASIGNLSSLLAFDVRENILWGRI-DSLVQLRNLRLLDIAFNHFSGMIPPPIFNISSLEVI 246
+GNLSSL F EN L G I + L + L LL++ N G IP IF L+V+
Sbjct: 176 HWVGNLSSLRVFTAYENDLVGEIPNGLGLVSELELLNLHSNQLEGKIPKGIFEKGKLKVL 235
Query: 247 SLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRV 306
L++NR TG LP G+ L + N G IP ++ N S L E +N SG +
Sbjct: 236 VLTQNRLTGELPEAVGI-CSGLSSIRIGNNELVGVIPRTIGNISGLTYFEADKNNLSGEI 294
Query: 307 SVDFSRLKNLSFLNMGINNLGTRTANEL-DFINL-----------------LANCSKLER 348
+FS+ NL+ LN+ N EL INL L +
Sbjct: 295 VAEFSKCSNLTLLNLAANGFAGTIPTELGQLINLQELILSGNSLFGEIPKSFLGSGNLNK 354
Query: 349 LYFNRNRFQGVLPQSMANFSSTIKQIAMGRNRISGTIPPGIRSHANLNWLTMDSNLFTGT 408
L + NR G +P+ + + ++ + + +N I G IP I + L L + N TGT
Sbjct: 355 LDLSNNRLNGTIPKELCSMPR-LQYLLLDQNSIRGDIPHEIGNCVKLLQLQLGRNYLTGT 413
Query: 409 IPPVIGELKNLQL-LDLGGNFLQGSIPSSLGNLTLL 443
IPP IG ++NLQ+ L+L N L GS+P LG L L
Sbjct: 414 IPPEIGRMRNLQIALNLSFNHLHGSLPPELGKLDKL 449
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Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 0 EC: . EC: 1 |
| >sp|P93194|RPK1_IPONI Receptor-like protein kinase OS=Ipomoea nil GN=INRPK1 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 203 bits (516), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 147/456 (32%), Positives = 223/456 (48%), Gaps = 48/456 (10%)
Query: 33 TDRLALLAIKLQLHD-PLGVTSSWNNSMSL-CQWTGVTCGRRHQRVTRLDLRNQSIGGPL 90
+D ALL++ P +T SWN S S C W GV C RR Q V L+L + I G
Sbjct: 26 SDGAALLSLTRHWTSIPSDITQSWNASDSTPCSWLGVECDRR-QFVDTLNLSSYGISGEF 84
Query: 91 SPYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIE 150
P + +L L+ + L+ NGF G IP Q+G ++LE + LS+NSF+G IP L NL
Sbjct: 85 GPEISHLKHLKKVVLSGNGFFGSIPSQLGNCSLLEHIDLSSNSFTGNIPDTLGALQNLRN 144
Query: 151 LSVDTNYLV------------------------GEIPSAIGSLFKLERLFIFHNHITGQL 186
LS+ N L+ G IPS IG++ +L L++ N +G +
Sbjct: 145 LSLFFNSLIGPFPESLLSIPHLETVYFTGNGLNGSIPSNIGNMSELTTLWLDDNQFSGPV 204
Query: 187 PASIGNLSSLLAFDVRENILWGRID-SLVQLRNLRLLDIAFNHFSGMIPPPIFNISSLEV 245
P+S+GN+++L + +N L G + +L L NL LD+ N G IP + ++
Sbjct: 205 PSSLGNITTLQELYLNDNNLVGTLPVTLNNLENLVYLDVRNNSLVGAIPLDFVSCKQIDT 264
Query: 246 ISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGR 305
ISLS N+FTG LP G N +LR+ +G IP ++L+ + + N FSGR
Sbjct: 265 ISLSNNQFTGGLPPGLG-NCTSLREFGAFSCALSGPIPSCFGQLTKLDTLYLAGNHFSGR 323
Query: 306 VSVDFSRLKNLSFLNMGINNLGTRTANE------LDFINLLAN------------CSKLE 347
+ + + K++ L + N L E L +++L N L+
Sbjct: 324 IPPELGKCKSMIDLQLQQNQLEGEIPGELGMLSQLQYLHLYTNNLSGEVPLSIWKIQSLQ 383
Query: 348 RLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNRISGTIPPGIRSHANLNWLTMDSNLFTG 407
L +N G LP M + +A+ N +G IP + ++++L L + N+FTG
Sbjct: 384 SLQLYQNNLSGELPVDMTELKQLVS-LALYENHFTGVIPQDLGANSSLEVLDLTRNMFTG 442
Query: 408 TIPPVIGELKNLQLLDLGGNFLQGSIPSSLGNLTLL 443
IPP + K L+ L LG N+L+GS+PS LG + L
Sbjct: 443 HIPPNLCSQKKLKRLLLGYNYLEGSVPSDLGGCSTL 478
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Possible role in short-day photoperiod floral induction. Ipomoea nil (taxid: 35883) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q9SHI2|Y1723_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 OS=Arabidopsis thaliana GN=At1g17230 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 202 bits (514), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 153/434 (35%), Positives = 215/434 (49%), Gaps = 38/434 (8%)
Query: 31 NETDRLALLAIKLQLHDPLGVTSSWNN-SMSLCQWTGVTCGRRHQR-VTRLDLRNQSIGG 88
NE R+ LL K L+D G +SWN + C WTG+ C H R VT +DL ++ G
Sbjct: 25 NEEGRV-LLEFKAFLNDSNGYLASWNQLDSNPCNWTGIAC--THLRTVTSVDLNGMNLSG 81
Query: 89 PLSPYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNL 148
LSP + L LR +N++ N G IP + LE L L N F G IP L+ L
Sbjct: 82 TLSPLICKLHGLRKLNVSTNFISGPIPQDLSLCRSLEVLDLCTNRFHGVIPIQLTMIITL 141
Query: 149 IELSVDTNYLVGEIPSAIGSLFKLERLFIFHNHITGQLPASIGNL--------------- 193
+L + NYL G IP IG+L L+ L I+ N++TG +P S+ L
Sbjct: 142 KKLYLCENYLFGSIPRQIGNLSSLQELVIYSNNLTGVIPPSMAKLRQLRIIRAGRNGFSG 201
Query: 194 ---------SSLLAFDVRENILWGRI-DSLVQLRNLRLLDIAFNHFSGMIPPPIFNISSL 243
SL + EN+L G + L +L+NL L + N SG IPP + NIS L
Sbjct: 202 VIPSEISGCESLKVLGLAENLLEGSLPKQLEKLQNLTDLILWQNRLSGEIPPSVGNISRL 261
Query: 244 EVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFS 303
EV++L EN FTGS+P + G L +++L N TG IP + N I+FS NQ +
Sbjct: 262 EVLALHENYFTGSIPREIG-KLTKMKRLYLYTNQLTGEIPREIGNLIDAAEIDFSENQLT 320
Query: 304 GRVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQS 363
G + +F + NL L++ N L EL + L LE+L + NR G +PQ
Sbjct: 321 GFIPKEFGHILNLKLLHLFENILLGPIPRELGELTL------LEKLDLSINRLNGTIPQE 374
Query: 364 MANFSSTIKQIAMGRNRISGTIPPGIRSHANLNWLTMDSNLFTGTIPPVIGELKNLQLLD 423
+ F + + + N++ G IPP I ++N + L M +N +G IP + L LL
Sbjct: 375 L-QFLPYLVDLQLFDNQLEGKIPPLIGFYSNFSVLDMSANSLSGPIPAHFCRFQTLILLS 433
Query: 424 LGGNFLQGSIPSSL 437
LG N L G+IP L
Sbjct: 434 LGSNKLSGNIPRDL 447
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|O49318|Y2317_ARATH Probable leucine-rich repeat receptor-like protein kinase At2g33170 OS=Arabidopsis thaliana GN=At2g33170 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 200 bits (509), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 142/423 (33%), Positives = 213/423 (50%), Gaps = 41/423 (9%)
Query: 45 LHDPLGVTSSWNN-SMSLCQWTGVTCGRRHQR-------VTRLDLRNQSIGGPLSPYVGN 96
D L +WN + C W GV C + VT LDL + ++ G +SP +G
Sbjct: 48 FQDSLNRLHNWNGIDETPCNWIGVNCSSQGSSSSSNSLVVTSLDLSSMNLSGIVSPSIGG 107
Query: 97 LSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSVDTN 156
L L Y+NLA N G+IP +IG + LE + L+NN F G+IP +++ S L ++ N
Sbjct: 108 LVNLVYLNLAYNALTGDIPREIGNCSKLEVMFLNNNQFGGSIPVEINKLSQLRSFNICNN 167
Query: 157 YLVGEIPSAIGSLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLV-Q 215
L G +P IG L+ LE L + N++TG LP S+GNL+ L F +N G I + + +
Sbjct: 168 KLSGPLPEEIGDLYNLEELVAYTNNLTGPLPRSLGNLNKLTTFRAGQNDFSGNIPTEIGK 227
Query: 216 LRNLRLLDIA------------------------FNHFSGMIPPPIFNISSLEVISLSEN 251
NL+LL +A N FSG IP I N++SLE ++L N
Sbjct: 228 CLNLKLLGLAQNFISGELPKEIGMLVKLQEVILWQNKFSGFIPKDIGNLTSLETLALYGN 287
Query: 252 RFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFS 311
G +P + G N+ +L++L N G+IP L S++ I+FS N SG + V+ S
Sbjct: 288 SLVGPIPSEIG-NMKSLKKLYLYQNQLNGTIPKELGKLSKVMEIDFSENLLSGEIPVELS 346
Query: 312 RLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTI 371
++ L L + N L NEL + LA +L + N G +P N +S +
Sbjct: 347 KISELRLLYLFQNKLTGIIPNELSKLRNLA------KLDLSINSLTGPIPPGFQNLTS-M 399
Query: 372 KQIAMGRNRISGTIPPGIRSHANLNWLTMDSNLFTGTIPPVIGELKNLQLLDLGGNFLQG 431
+Q+ + N +SG IP G+ ++ L + N +G IPP I + NL LL+LG N + G
Sbjct: 400 RQLQLFHNSLSGVIPQGLGLYSPLWVVDFSENQLSGKIPPFICQQSNLILLNLGSNRIFG 459
Query: 432 SIP 434
+IP
Sbjct: 460 NIP 462
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q9C9H7|RLP12_ARATH Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 195 bits (496), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 150/448 (33%), Positives = 222/448 (49%), Gaps = 49/448 (10%)
Query: 7 IFCCLATLSLSLLLHSHKTICANSNETD-RLALLAIKLQLHDPLGVT--------SSWNN 57
+F + LSLL+HS + + D R ALL + + P+ + WN
Sbjct: 10 VFSSRIIIFLSLLVHSLASSSPHFCRDDQRDALLEFRGEF--PINASWHIMNQWRGPWNK 67
Query: 58 SMSLCQWTGVTCGRRHQRVTRLDLRNQSIGGPLS--PYVGNLSFLRYINLANNGFLGEIP 115
S C W GVTC + +V LD+ N + L + L +LR+++L N GEIP
Sbjct: 68 STDCCLWNGVTCNDKSGQVISLDIPNTFLNNYLKTNSSLFKLQYLRHLDLTNCNLYGEIP 127
Query: 116 PQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSVDTNYLVGEIPSAIGSLFKLERL 175
+G L+ L + L N F VGEIP++IG+L +L L
Sbjct: 128 SSLGNLSHLTLVNLYFNKF------------------------VGEIPASIGNLNQLRHL 163
Query: 176 FIFHNHITGQLPASIGNLSSLLAFDVRENILWGRI-DSLVQLRNLRLLDIAFNHFSGMIP 234
+ +N +TG++P+S+GNLS L+ ++ N L G+I DS+ L+ LR L +A N+ G IP
Sbjct: 164 ILANNVLTGEIPSSLGNLSRLVNLELFSNRLVGKIPDSIGDLKQLRNLSLASNNLIGEIP 223
Query: 235 PPIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEM 294
+ N+S+L + L+ N+ G +P G NL LR +S N+ +G+IP+S +N ++L +
Sbjct: 224 SSLGNLSNLVHLVLTHNQLVGEVPASIG-NLIELRVMSFENNSLSGNIPISFANLTKLSI 282
Query: 295 IEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRN 354
S N F+ D S NL + ++ N+ L I LE +Y N
Sbjct: 283 FVLSSNNFTSTFPFDMSIFHNLEYFDVSYNSFSGPFPKSLLLI------PSLESIYLQEN 336
Query: 355 RFQGVLPQSMANFSSTIK--QIAMGRNRISGTIPPGIRSHANLNWLTMDSNLFTGTIPPV 412
+F G P AN SS+ K + +GRNR+ G IP I NL L + N FTG IPP
Sbjct: 337 QFTG--PIEFANTSSSTKLQDLILGRNRLHGPIPESISRLLNLEELDISHNNFTGAIPPT 394
Query: 413 IGELKNLQLLDLGGNFLQGSIPSSLGNL 440
I +L NL LDL N L+G +P+ L L
Sbjct: 395 ISKLVNLLHLDLSKNNLEGEVPACLWRL 422
|
Involved in the perception of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristems maintenance. Arabidopsis thaliana (taxid: 3702) |
| >sp|C0LGS2|Y4361_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g36180 OS=Arabidopsis thaliana GN=At4g36180 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 192 bits (489), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 151/498 (30%), Positives = 244/498 (48%), Gaps = 85/498 (17%)
Query: 18 LLLHSHKTICANSNETDRLALLAIKLQLHDPLGVTSSWNNS--MSLCQWTGVTC------ 69
L++++ A+ ++ + AL A KL LHDPLG +SW+ S + C W GV C
Sbjct: 12 LVIYAPLVSYADESQAEIDALTAFKLNLHDPLGALTSWDPSTPAAPCDWRGVGCTNHRVT 71
Query: 70 ----------GRRHQRVT------RLDLRN------------------------QSIGGP 89
GR R++ +L LR+ S+ G
Sbjct: 72 EIRLPRLQLSGRISDRISGLRMLRKLSLRSNSFNGTIPTSLAYCTRLLSVFLQYNSLSGK 131
Query: 90 LSPYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLI 149
L P + NL+ L N+A N GEIP +G + L+ L +S+N+FSG IP+ L+ + L
Sbjct: 132 LPPAMRNLTSLEVFNVAGNRLSGEIP--VGLPSSLQFLDISSNTFSGQIPSGLANLTQLQ 189
Query: 150 ELSVDTNYLVGEIPSAIGSLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGR 209
L++ N L GEIP+++G+L L+ L++ N + G LP++I N SSL+ EN + G
Sbjct: 190 LLNLSYNQLTGEIPASLGNLQSLQYLWLDFNLLQGTLPSAISNCSSLVHLSASENEIGGV 249
Query: 210 IDSLV-QLRNLRLLDIAFNHFSGMIPPPIFNISS-------------------------- 242
I + L L +L ++ N+FSG +P +F +S
Sbjct: 250 IPAAYGALPKLEVLSLSNNNFSGTVPFSLFCNTSLTIVQLGFNAFSDIVRPETTANCRTG 309
Query: 243 LEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQF 302
L+V+ L ENR +G P+ N+ +L+ L +GN F+G IP + N RLE ++ + N
Sbjct: 310 LQVLDLQENRISGRFPLWL-TNILSLKNLDVSGNLFSGEIPPDIGNLKRLEELKLANNSL 368
Query: 303 SGRVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQ 362
+G + V+ + +L L+ N+L + L ++ L+ L RN F G +P
Sbjct: 369 TGEIPVEIKQCGSLDVLDFEGNSLKGQIPEFLGYMK------ALKVLSLGRNSFSGYVPS 422
Query: 363 SMANFSSTIKQIAMGRNRISGTIPPGIRSHANLNWLTMDSNLFTGTIPPVIGELKNLQLL 422
SM N ++++ +G N ++G+ P + + +L+ L + N F+G +P I L NL L
Sbjct: 423 SMVNLQQ-LERLNLGENNLNGSFPVELMALTSLSELDLSGNRFSGAVPVSISNLSNLSFL 481
Query: 423 DLGGNFLQGSIPSSLGNL 440
+L GN G IP+S+GNL
Sbjct: 482 NLSGNGFSGEIPASVGNL 499
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 443 | ||||||
| 359482058 | 1040 | PREDICTED: probable LRR receptor-like se | 0.939 | 0.4 | 0.488 | 8e-98 | |
| 147853780 | 1904 | hypothetical protein VITISV_030954 [Viti | 0.932 | 0.216 | 0.489 | 3e-97 | |
| 255575904 | 834 | serine-threonine protein kinase, plant-t | 0.923 | 0.490 | 0.487 | 3e-95 | |
| 224119022 | 1021 | predicted protein [Populus trichocarpa] | 0.984 | 0.427 | 0.466 | 5e-95 | |
| 255575908 | 988 | serine-threonine protein kinase, plant-t | 0.961 | 0.431 | 0.486 | 6e-95 | |
| 224119102 | 1007 | predicted protein [Populus trichocarpa] | 0.990 | 0.435 | 0.449 | 1e-94 | |
| 224116466 | 1008 | predicted protein [Populus trichocarpa] | 0.968 | 0.425 | 0.454 | 1e-93 | |
| 224081190 | 1011 | predicted protein [Populus trichocarpa] | 0.968 | 0.424 | 0.463 | 3e-93 | |
| 147810637 | 1009 | hypothetical protein VITISV_020143 [Viti | 0.945 | 0.415 | 0.468 | 3e-91 | |
| 255585471 | 963 | serine-threonine protein kinase, plant-t | 0.959 | 0.441 | 0.467 | 5e-91 |
| >gi|359482058|ref|XP_002274540.2| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 363 bits (932), Expect = 8e-98, Method: Compositional matrix adjust.
Identities = 204/418 (48%), Positives = 281/418 (67%), Gaps = 2/418 (0%)
Query: 28 ANSNETDRLALLAIKLQL-HDPLGVTSSWNNSMSLCQWTGVTCGRRHQRVTRLDLRNQSI 86
++ NETDRLALLAIK Q+ DPLG+T+SWN+S+ C WTGVTCG RHQRV L+L + +
Sbjct: 34 SHRNETDRLALLAIKAQITQDPLGITTSWNDSVHFCNWTGVTCGHRHQRVNTLNLNSLHL 93
Query: 87 GGPLSPYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRS 146
G LSP +GNL+FL +NL N F G+IP ++GRL+ L L L+NNSFSG IP NLSR S
Sbjct: 94 VGSLSPSIGNLTFLTGLNLELNNFHGQIPQELGRLSRLRALNLTNNSFSGEIPANLSRCS 153
Query: 147 NLIELSVDTNYLVGEIPSAIGSLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENIL 206
NL+ + N L+G IPS +GS K+ R+ + +N++TG +P S+GNL+S+ + N L
Sbjct: 154 NLVYFRLGFNNLIGRIPSWLGSYPKVVRMQLHYNNLTGPVPDSLGNLTSIKSLSFAVNHL 213
Query: 207 WGRI-DSLVQLRNLRLLDIAFNHFSGMIPPPIFNISSLEVISLSENRFTGSLPVDAGVNL 265
G I +L QL+ L + + N FSG+IP ++N+SSLEV SL N+ GSLP D L
Sbjct: 214 EGSIPQALGQLQTLEFMGLGMNGFSGIIPSSVYNMSSLEVFSLPYNKLYGSLPWDLAFTL 273
Query: 266 PNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINN 325
PNL+ L+ N+FTGS+P SLSNAS L + + + F+G+VS+DF + NL L + N
Sbjct: 274 PNLQVLNIGNNDFTGSLPSSLSNASNLLEFDITMSNFTGKVSIDFGGMPNLWGLFLASNP 333
Query: 326 LGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNRISGTI 385
LG A++L F+N L C L+ L + ++F GVLP S+AN S+ + ++ + N++SGTI
Sbjct: 334 LGKGEADDLSFLNSLMKCRALKVLDLSGSQFGGVLPNSIANLSTQLMKLKLDNNQLSGTI 393
Query: 386 PPGIRSHANLNWLTMDSNLFTGTIPPVIGELKNLQLLDLGGNFLQGSIPSSLGNLTLL 443
PPGI + NL L + +N FTG+IP +IG L+ L +DL N L G IPSSLGN+T L
Sbjct: 394 PPGIGNLVNLTDLILANNDFTGSIPVLIGNLQMLGRIDLSRNQLSGHIPSSLGNITRL 451
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147853780|emb|CAN83822.1| hypothetical protein VITISV_030954 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 361 bits (927), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 203/415 (48%), Positives = 278/415 (66%), Gaps = 2/415 (0%)
Query: 31 NETDRLALLAIKLQL-HDPLGVTSSWNNSMSLCQWTGVTCGRRHQRVTRLDLRNQSIGGP 89
NETDRLALLAIK Q+ DPLG+T+SWN+S+ C WTGVTCG RHQRV L+L + + G
Sbjct: 68 NETDRLALLAIKAQITQDPLGITTSWNDSVHFCNWTGVTCGHRHQRVNTLNLSSLHLVGS 127
Query: 90 LSPYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLI 149
LSP +GNL+FL +NL N F G+IP ++GRL+ L L L+NNSFSG IP NLSR SNL+
Sbjct: 128 LSPSIGNLTFLTGLNLELNNFHGQIPQELGRLSRLRALNLTNNSFSGEIPANLSRCSNLV 187
Query: 150 ELSVDTNYLVGEIPSAIGSLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGR 209
+ N L+G IPS +GS K+ R+ + +N++TG +P S+GNL+S+ + N L G
Sbjct: 188 YFRLGFNNLIGRIPSWLGSYPKVVRMQLHYNNLTGPVPDSLGNLTSIKSLSFAVNHLEGS 247
Query: 210 I-DSLVQLRNLRLLDIAFNHFSGMIPPPIFNISSLEVISLSENRFTGSLPVDAGVNLPNL 268
I +L QL+ L + + N FSG+IP ++N+SSLEV SL N+ GSLP D LPNL
Sbjct: 248 IPQALGQLQTLEFMGLGMNGFSGIIPSSVYNMSSLEVFSLPYNKLYGSLPWDLAFTLPNL 307
Query: 269 RQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLGT 328
+ L+ N+FTG +P SLSNAS L + + + F+G+VS+DF + NL L + N LG
Sbjct: 308 QVLNIGNNDFTGPLPSSLSNASNLLEFDITMSNFTGKVSIDFGGMPNLWGLFLASNPLGK 367
Query: 329 RTANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNRISGTIPPG 388
A++L F+N L C L+ L + ++F GVLP S+AN S+ + ++ + N++SGTIPPG
Sbjct: 368 GEADDLSFLNSLMKCRALKVLDLSGSQFGGVLPNSIANLSTQLMKLKLDNNQLSGTIPPG 427
Query: 389 IRSHANLNWLTMDSNLFTGTIPPVIGELKNLQLLDLGGNFLQGSIPSSLGNLTLL 443
I + NL L + +N FTG+IP +IG L+ L +DL N L G IPSSLGN+T L
Sbjct: 428 IGNLVNLTDLILANNDFTGSIPVLIGNLQMLGRIDLSRNQLSGHIPSSLGNITRL 482
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255575904|ref|XP_002528849.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223531700|gb|EEF33523.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 355 bits (911), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 201/412 (48%), Positives = 266/412 (64%), Gaps = 3/412 (0%)
Query: 31 NETDRLALLAIKLQL-HDPLGVTSSWNNSMSLCQWTGVTCGRRHQRVTRLDLRNQSIGGP 89
N+TDRLALL K ++ DPLGV SSWN S+ C+W G+TC RRHQRVTRLDL + + G
Sbjct: 43 NQTDRLALLDFKDKITDDPLGVVSSWNRSLHFCKWYGITCSRRHQRVTRLDLSSLKLSGS 102
Query: 90 LSPYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLI 149
+SPYVGNLSFLR + L NN F EIPPQIG L L+ L L NNS SG IP+N+S SNL+
Sbjct: 103 ISPYVGNLSFLRELYLENNSFSYEIPPQIGHLRRLQSLSLYNNSISGEIPSNISACSNLV 162
Query: 150 ELSVDTNYLVGEIPSAIGSLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGR 209
L +D N LVGEIP + SL KLE F+ N++ G +P S+ NLSS+ F N L G
Sbjct: 163 YLYLDGNNLVGEIPEELTSLMKLEYFFLGKNNLIGTIPQSLRNLSSIDTFSAYRNKLHGV 222
Query: 210 I-DSLVQLRNLRLLDIAFNHFSGMIPPPIFNISSLEVISLSENRFTGSLPVDAGVNLPNL 268
+ +S +L NLR+L + N FSG IP IFN+SS+E I + N G+LP+ ++LP+L
Sbjct: 223 LPESFGRLMNLRILTLYDNQFSGNIPSSIFNLSSIESIDVGINHLHGTLPMTLVISLPHL 282
Query: 269 RQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLGT 328
S N FTGSIP S+SNAS LE+++ ++N +G V +L + FL + N+LG
Sbjct: 283 NFFSIGQNQFTGSIPTSISNASNLEILQLNQNSLTGTVP-SLEKLNKMFFLGIAGNHLGG 341
Query: 329 RTANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNRISGTIPPG 388
N+L F++ L N + L L N N F G LP+ ++NFS ++ +A+ N+I G +P G
Sbjct: 342 GRTNDLKFLSDLTNATALRLLNINDNNFGGKLPEHLSNFSKKLELLALNDNQIHGNLPAG 401
Query: 389 IRSHANLNWLTMDSNLFTGTIPPVIGELKNLQLLDLGGNFLQGSIPSSLGNL 440
I NL L++ SN +GTIP IG+LKNL+ L + N GSIPSSLGNL
Sbjct: 402 IEFLVNLTILSVSSNKLSGTIPSSIGKLKNLRELYMHDNNFSGSIPSSLGNL 453
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224119022|ref|XP_002331306.1| predicted protein [Populus trichocarpa] gi|222873889|gb|EEF11020.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 354 bits (908), Expect = 5e-95, Method: Compositional matrix adjust.
Identities = 206/442 (46%), Positives = 284/442 (64%), Gaps = 6/442 (1%)
Query: 7 IFC-CLATLSLSLLLHSHKTICAN-SNETDRLALLAIKLQL-HDPLGVTSSWNNSMSLCQ 63
+FC S LL C++ +NETD LAL+ K ++ DPLG+ SSWN+++ CQ
Sbjct: 1 MFCSAFCFRSFVFLLSLISVTCSDYTNETDLLALIQFKNKIVDDPLGIMSSWNSTIHFCQ 60
Query: 64 WTGVTCGRRHQRVTRLDLRNQSIGGPLSPYVGNLSFLRYINLANNGFLGEIPPQIGRLNM 123
W GV+CGRRHQRV L L++ + G +SP++GNLSFLR ++L NN F EIPPQ+GRL
Sbjct: 61 WHGVSCGRRHQRVRVLALQSLKLSGTISPHIGNLSFLRELHLQNNSFFHEIPPQVGRLRS 120
Query: 124 LEGLVLSNNSFSGTIPTNLSRRSNLIELSVDTNYLVGEIPSAIGSLFKLERLFIFHNHIT 183
L+ L NNS SG IP ++S SNLI + ++ N L GEIP +GSL KL+ L + N +T
Sbjct: 121 LQIFSLHNNSISGQIPPSISDCSNLISIKIEFNNLTGEIPMELGSLLKLKNLTLEVNGLT 180
Query: 184 GQLPASIGNLSSLLAFDVREN-ILWGRIDS-LVQLRNLRLLDIAFNHFSGMIPPPIFNIS 241
G +P S+GNLSSL + +N IL+G + S L +L+NLR+L++ N SG+IPP IFN+S
Sbjct: 181 GTIPPSLGNLSSLEILRLEKNKILFGNVPSTLGKLKNLRILNLMDNRLSGVIPPSIFNLS 240
Query: 242 SLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQ 301
SL + + N F G+LP D G++LPNL S N FTGSIPVS+SNAS +E+++ S N
Sbjct: 241 SLTALDIGFNLFHGNLPSDIGISLPNLEFFSIASNQFTGSIPVSISNASNIELLQVSLNN 300
Query: 302 FSGRVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLP 361
+G V +L L+F + N+LG+ AN+L F++ L N + LE L RN F G LP
Sbjct: 301 LTGEVPT-LEKLHRLNFFTLFSNHLGSGQANDLSFLSSLTNATTLEYLSIKRNNFGGELP 359
Query: 362 QSMANFSSTIKQIAMGRNRISGTIPPGIRSHANLNWLTMDSNLFTGTIPPVIGELKNLQL 421
+ ++N S+ + I++ N I G+IP GI NL + +N +G IP IGEL+NL+
Sbjct: 360 KQISNLSTMLGVISLPENNILGSIPAGIEKLVNLKVFDVGNNKISGIIPSSIGELQNLEG 419
Query: 422 LDLGGNFLQGSIPSSLGNLTLL 443
L L N L G IPSS+GNLT L
Sbjct: 420 LVLDYNNLSGRIPSSVGNLTKL 441
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255575908|ref|XP_002528851.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223531702|gb|EEF33525.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 354 bits (908), Expect = 6e-95, Method: Compositional matrix adjust.
Identities = 209/430 (48%), Positives = 275/430 (63%), Gaps = 4/430 (0%)
Query: 14 LSLSLLLHSHKTICANSNETDRLALLAIKLQL-HDPLGVTSSWNNSMSLCQWTGVTCGRR 72
LS ++L + AN NETDRLALL K ++ DPLG+ SSWN+S+ CQW GVTCGRR
Sbjct: 27 LSFAVLPAAFAMRSAN-NETDRLALLEFKDKIADDPLGMMSSWNSSLHFCQWHGVTCGRR 85
Query: 73 HQRVTRLDLRNQSIGGPLSPYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNN 132
HQRVT LDL + + G +SPYVGNLSFLR + L NN F +IPPQ G L L+ L L NN
Sbjct: 86 HQRVTMLDLGSLKLSGSISPYVGNLSFLRKLYLENNSFSHDIPPQSGHLRRLQILSLYNN 145
Query: 133 SFSGTIPTNLSRRSNLIELSVDTNYLVGEIPSAIGSLFKLERLFIFHNHITGQLPASIGN 192
SF G IP N+S SNL+ L +D N LVG+IPS + SL KL+ F N++ G +P S+GN
Sbjct: 146 SFGGEIPPNISACSNLVYLYLDGNKLVGKIPSQLTSLMKLKEFFFGRNNLIGTIPPSLGN 205
Query: 193 LSSLLAFDVRENILWGRI-DSLVQLRNLRLLDIAFNHFSGMIPPPIFNISSLEVISLSEN 251
LSSL N L G + +SL +L NL+ L + N FSG IP +FNISS+ I + N
Sbjct: 206 LSSLWTLSGDTNKLHGVLPESLGRLTNLKYLALFENRFSGTIPSSVFNISSIVHIDVEGN 265
Query: 252 RFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFS 311
G+LP+ G++LP L+ +S + N FTGSIP S+SNAS L E S N +G V
Sbjct: 266 HLQGTLPMSLGISLPQLQFISISSNQFTGSIPTSISNASNLANFEISANNLTGNVP-SLE 324
Query: 312 RLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTI 371
+L NLSFL++G+N+LG+ A++L F+ L N + L+ L + F G LP+++AN S +
Sbjct: 325 KLNNLSFLSIGLNHLGSGRADDLKFLADLTNATALQILNIGMDNFGGKLPENIANLSKKL 384
Query: 372 KQIAMGRNRISGTIPPGIRSHANLNWLTMDSNLFTGTIPPVIGELKNLQLLDLGGNFLQG 431
+ + N++ G IP GI NLN+L N F+GTIP IG+LKNL+ L L N G
Sbjct: 385 EIFFINNNQLHGNIPAGIEVLVNLNFLYASWNKFSGTIPSSIGKLKNLRELYLNNNNFLG 444
Query: 432 SIPSSLGNLT 441
+IPSSL NLT
Sbjct: 445 NIPSSLANLT 454
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224119102|ref|XP_002331325.1| predicted protein [Populus trichocarpa] gi|222873908|gb|EEF11039.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 353 bits (905), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 199/443 (44%), Positives = 279/443 (62%), Gaps = 4/443 (0%)
Query: 1 MLSPISIFCCLATLSLSLLLHSHKTICANSNETDRLALLAIKLQL-HDPLGVTSSWNNSM 59
L P +FC A + L LL + + NETDRLALL K ++ HDPLG+ WN+S+
Sbjct: 3 FLVPSPVFCPHAFVLL-LLCFTSSALSIGRNETDRLALLDFKSKITHDPLGIMRLWNSSI 61
Query: 60 SLCQWTGVTCGRRHQRVTRLDLRNQSIGGPLSPYVGNLSFLRYINLANNGFLGEIPPQIG 119
C W GVTC ++HQRV LDL++ + G +SPY+GNLSFLR + L +N F EIP QIG
Sbjct: 62 HFCHWFGVTCSQKHQRVAVLDLQSLKLSGSVSPYIGNLSFLRNLYLQHNSFSHEIPAQIG 121
Query: 120 RLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSVDTNYLVGEIPSAIGSLFKLERLFIFH 179
L+ L+ L L NNSF+G IP ++S NL+ L +D N L GEIP GS KL L+I
Sbjct: 122 HLHRLQILALHNNSFTGEIPASMSSSYNLVSLILDNNKLTGEIPKEFGSFLKLTDLYIDD 181
Query: 180 NHITGQLPASIGNLSSLLAFDVRENILWGRI-DSLVQLRNLRLLDIAFNHFSGMIPPPIF 238
N++ G +P S+GN+SSL + +N L+G + +L +L NLR+L + N FSG IPP +
Sbjct: 182 NNLVGTIPPSLGNISSLQELWLDDNNLFGNLPATLSKLVNLRVLSLFNNRFSGTIPPSML 241
Query: 239 NISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFS 298
N+SSL + N F G+LP D G++LPNL S N FTGS+PVS+SN S LEM+E +
Sbjct: 242 NLSSLRTFQVGLNHFQGNLPPDLGISLPNLEFFSIYSNQFTGSVPVSISNLSNLEMLELN 301
Query: 299 RNQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQG 358
N+ G++ +L+ L + + NNLG+ AN+L F++ L N + LE L +N FQG
Sbjct: 302 LNKLRGKMP-SLEKLQRLLSITIASNNLGSGEANDLSFLSSLTNATNLEELIITQNNFQG 360
Query: 359 VLPQSMANFSSTIKQIAMGRNRISGTIPPGIRSHANLNWLTMDSNLFTGTIPPVIGELKN 418
LP ++N S+T++ + + N + G+IP GI + +LN + +N +G IP IG+L+N
Sbjct: 361 QLPPQISNLSTTLEIMGLDSNLLFGSIPDGIENLISLNDFEVQNNHLSGIIPSTIGKLQN 420
Query: 419 LQLLDLGGNFLQGSIPSSLGNLT 441
L++L L N G IPSSLGNLT
Sbjct: 421 LEILGLALNNFSGDIPSSLGNLT 443
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224116466|ref|XP_002331904.1| predicted protein [Populus trichocarpa] gi|222874576|gb|EEF11707.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 350 bits (897), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 196/431 (45%), Positives = 276/431 (64%), Gaps = 2/431 (0%)
Query: 14 LSLSLLLHSHKTICANSNETDRLALLAIKLQLHDPLGVTSSWNNSMSLCQWTGVTCGRRH 73
LS ++ HS A +E D+L+LLA K Q+ DP SSWN S+ CQW+GV CGR+H
Sbjct: 9 LSFQIIQHSFSFSLARGSEIDKLSLLAFKAQISDPTTKLSSWNESLHFCQWSGVKCGRQH 68
Query: 74 QRVTRLDLRNQSIGGPLSPYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNS 133
QRV LDL + + G LSP +GNLSFLR ++L NN F IP +IGRL L+ L+L NNS
Sbjct: 69 QRVIELDLHSSQLVGSLSPSIGNLSFLRLLSLENNSFTNAIPQEIGRLVRLQTLILGNNS 128
Query: 134 FSGTIPTNLSRRSNLIELSVDTNYLVGEIPSAIGSLFKLERLFIFHNHITGQLPASIGNL 193
FSG IP+N+S SNL++L+++ N L G +P+ +GSL KL+ N++ G++P S NL
Sbjct: 129 FSGEIPSNISHCSNLLKLNLEGNNLTGNLPAGLGSLSKLQVFSFRKNNLDGKIPLSFENL 188
Query: 194 SSLLAFDVRENILWGRIDSLV-QLRNLRLLDIAFNHFSGMIPPPIFNISSLEVISLSENR 252
SS++ D N + G I S + +L+ L + N+ SG IP ++NISSL SL N+
Sbjct: 189 SSIIEIDGTLNNIQGGIPSSIGKLKTLNFFSLGSNNLSGTIPASLYNISSLIHFSLPYNQ 248
Query: 253 FTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSR 312
F G+LP + G+ LPNL+ L + N +G +P +L NA++ I S N+F+G+V +
Sbjct: 249 FHGTLPPNIGLTLPNLQYLGIHDNRLSGQLPATLINATKFTEIYLSYNKFTGKVPT-LAI 307
Query: 313 LKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIK 372
+ NL L+M N LG ++L F+ L+N SKLE LY + N F GVLP ++NFS+ +K
Sbjct: 308 MPNLRILSMEENGLGKGEDDDLSFLYTLSNSSKLEDLYIDNNNFGGVLPDIISNFSTKLK 367
Query: 373 QIAMGRNRISGTIPPGIRSHANLNWLTMDSNLFTGTIPPVIGELKNLQLLDLGGNFLQGS 432
Q+A G N+I GTIP GI + +L+ L +++N TG+IP IG+L+NL L N L GS
Sbjct: 368 QMAFGSNQIRGTIPDGIGNLVSLDTLGLEANHLTGSIPSSIGKLQNLADFFLNENKLSGS 427
Query: 433 IPSSLGNLTLL 443
IPSSLGN+T L
Sbjct: 428 IPSSLGNITSL 438
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224081190|ref|XP_002306327.1| predicted protein [Populus trichocarpa] gi|222855776|gb|EEE93323.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 348 bits (893), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 205/442 (46%), Positives = 280/442 (63%), Gaps = 13/442 (2%)
Query: 7 IFCCL----ATLSLSLLLHSHKTICANSNETDRLALLAIKLQLHDPLGVTSSWNNSMSLC 62
IFC L LS S LH NETDRL+LLA K Q+ DPL SSWN S C
Sbjct: 10 IFCPLLLLIIQLSFSFSLHE-------GNETDRLSLLAFKAQITDPLDALSSWNASTHFC 62
Query: 63 QWTGVTCGRRHQRVTRLDLRNQSIGGPLSPYVGNLSFLRYINLANNGFLGEIPPQIGRLN 122
+W+GV CG RHQR+ L+L++ + G LSP++GNLSFLR +NL N F +IP ++GRL
Sbjct: 63 KWSGVICGHRHQRIVELNLQSSQLTGNLSPHIGNLSFLRVLNLEGNYFSRDIPQELGRLF 122
Query: 123 MLEGLVLSNNSFSGTIPTNLSRRSNLIELSVDTNYLVGEIPSAIGSLFKLERLFIFHNHI 182
L+ LVL NN+FSG IP N+S SNL+ L + +N L G+IP+ +GSL KL + N++
Sbjct: 123 RLQRLVLGNNTFSGEIPVNISSCSNLLVLHLGSNNLTGKIPAQLGSLSKLGAFVLQGNNL 182
Query: 183 TGQLPASIGNLSSLLAFDVRENILWGRI-DSLVQLRNLRLLDIAFNHFSGMIPPPIFNIS 241
G +P+S GNLSS+ F +N L G I +SL L+ L+ +A N SG IP I NIS
Sbjct: 183 VGDIPSSFGNLSSVQNFFWTKNYLRGGIPESLGNLKRLKYFAVAENDLSGTIPSSICNIS 242
Query: 242 SLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQ 301
SL +SL +N+ GSLP D G+NLPNL L N N+ G IP +LSNAS++ +++ S N
Sbjct: 243 SLAYVSLGQNQLHGSLPPDLGLNLPNLAYLVINFNHLNGPIPATLSNASKIFLVDLSYNN 302
Query: 302 FSGRVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLP 361
+G++ D + L +L L + N+LG ++L F+ LAN + LE L N N F GVLP
Sbjct: 303 LTGKIP-DLASLPDLQKLLVHHNDLGNGEEDDLSFLYTLANSTNLESLGINDNNFGGVLP 361
Query: 362 QSMANFSSTIKQIAMGRNRISGTIPPGIRSHANLNWLTMDSNLFTGTIPPVIGELKNLQL 421
+ ++NFS+ +K I GRN+I G+IP I + +L+ L++++N G IP IG+L+NL
Sbjct: 362 EIVSNFSTNLKGITFGRNQIHGSIPTEIGNLISLDTLSLETNQLHGIIPSSIGKLQNLAA 421
Query: 422 LDLGGNFLQGSIPSSLGNLTLL 443
L L N + GSIPSSLGN+T L
Sbjct: 422 LYLNENKISGSIPSSLGNITSL 443
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147810637|emb|CAN63094.1| hypothetical protein VITISV_020143 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 342 bits (876), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 198/423 (46%), Positives = 271/423 (64%), Gaps = 4/423 (0%)
Query: 18 LLLHSHKTICANS--NETDRLALLAIKLQL-HDPLGVTSSWNNSMSLCQWTGVTCGRRH- 73
L +H + + A+S NETDRLAL+A K + DPLG+ SSWN+S+ C+W+GV C RRH
Sbjct: 15 LCIHLWRPVTASSMQNETDRLALIAFKDGITQDPLGMLSSWNDSLHFCRWSGVYCSRRHV 74
Query: 74 QRVTRLDLRNQSIGGPLSPYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNS 133
RVT+L+L + + G LSP++GNL+FLR I L NN F G++P +IG L L+ LVLSNNS
Sbjct: 75 HRVTKLNLFSYGLVGSLSPHIGNLTFLRTIVLQNNSFHGKVPSEIGGLFRLQVLVLSNNS 134
Query: 134 FSGTIPTNLSRRSNLIELSVDTNYLVGEIPSAIGSLFKLERLFIFHNHITGQLPASIGNL 193
F G +PTNL+ S L L++ N L G+IP +GSL KL+ L + N++TG++PAS+GNL
Sbjct: 135 FEGKVPTNLTYCSELRVLNLIDNKLEGKIPEELGSLSKLKALGLXRNNLTGKIPASLGNL 194
Query: 194 SSLLAFDVRENILWGRIDSLVQLRNLRLLDIAFNHFSGMIPPPIFNISSLEVISLSENRF 253
SSL F N L G I + ++ L + FN +G IP ++N+S++ + N+
Sbjct: 195 SSLTLFSAIYNSLEGSIPEEIGRTSIDQLQLGFNRLTGTIPSSLYNLSNMYYFLVGANQL 254
Query: 254 TGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRL 313
GSL D G P+LR L N FTG +PVSLSNAS LE I N F+G V + RL
Sbjct: 255 EGSLSQDMGTAFPHLRMLVLAANRFTGPVPVSLSNASMLEDIYAPDNSFTGPVPPNLGRL 314
Query: 314 KNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQ 373
+NL + M N LG+ ++L FIN LANC+ L+R+ F RN +G L ++ANFS+ I
Sbjct: 315 QNLRDITMAWNQLGSAGGDDLSFINSLANCTWLQRMSFXRNFLKGPLVSTIANFSTQISL 374
Query: 374 IAMGRNRISGTIPPGIRSHANLNWLTMDSNLFTGTIPPVIGELKNLQLLDLGGNFLQGSI 433
I +G N+I GTIP GI++ NL +L + N TG+IP IG+L +Q+L L GN L G I
Sbjct: 375 IDLGINQIHGTIPSGIKNLVNLTFLNLARNHLTGSIPSNIGKLYKIQVLLLLGNRLSGII 434
Query: 434 PSS 436
PSS
Sbjct: 435 PSS 437
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255585471|ref|XP_002533428.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223526716|gb|EEF28948.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 341 bits (874), Expect = 5e-91, Method: Compositional matrix adjust.
Identities = 200/428 (46%), Positives = 266/428 (62%), Gaps = 3/428 (0%)
Query: 16 LSLLLHSHKTICANSNETDRLALLAIKLQL-HDPLGVTSSWNNSMSLCQWTGVTCGRRHQ 74
L L S + + NETD ALL K ++ HDP V SWN ++ CQW GVTCG H+
Sbjct: 22 LILCFSSTTSSAISGNETDLQALLEFKSKITHDPFQVLRSWNETIHFCQWQGVTCGLLHR 81
Query: 75 RVTRLDLRNQSIGGPLSPYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSF 134
RVT LDL + I G +SPY+GNLSFLR +N+ NN F EIP QIG L LE L L+NNS
Sbjct: 82 RVTVLDLHSLKISGSISPYIGNLSFLRALNIQNNSFGHEIPQQIGYLRRLEELRLNNNSV 141
Query: 135 SGTIPTNLSRRSNLIELSVDTNYLVGEIPSAIGSLFKLERLFIFHNHITGQLPASIGNLS 194
G IPTN+SR SNL+ +S+ N L G +P +G L L+ L IF N +TG +P S+GNLS
Sbjct: 142 GGKIPTNISRCSNLVFISLGKNKLEGNVPEELGVLSNLQVLSIFGNKLTGSIPHSLGNLS 201
Query: 195 SLLAFDVRENILWGRI-DSLVQLRNLRLLDIAFNHFSGMIPPPIFNISSLEVISLSENRF 253
L + EN + G + +SL LRNL L + N SG IP +FN+SS+ + + EN F
Sbjct: 202 QLQRLSLAENRMVGEVPNSLGWLRNLTFLSLRSNRLSGTIPSSLFNLSSIRNLDIGENNF 261
Query: 254 TGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRL 313
G+LP D G LPN+R + + N FTG IPVSLSNA+ LE + +N +G V ++L
Sbjct: 262 HGNLPSDIGFLLPNIRWFAISSNEFTGKIPVSLSNATNLESLLLLQNNLTGEVP-SLAKL 320
Query: 314 KNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQ 373
L ++ NNLGT A++L F++ L N + LE L N N F G+LP S+AN S+T++
Sbjct: 321 DRLRVFSLTSNNLGTGKADDLSFLHSLTNTTALEELGVNGNNFGGMLPDSIANLSTTLRI 380
Query: 374 IAMGRNRISGTIPPGIRSHANLNWLTMDSNLFTGTIPPVIGELKNLQLLDLGGNFLQGSI 433
+ + NRI G+IP GI + +L + +N +G IP IG+L+NL +L L N L G I
Sbjct: 381 LLLDNNRIIGSIPSGIENLVSLEDFEVWNNQLSGFIPDSIGKLQNLVVLALNSNMLSGHI 440
Query: 434 PSSLGNLT 441
PSSLGNLT
Sbjct: 441 PSSLGNLT 448
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 443 | ||||||
| TAIR|locus:2149922 | 1031 | EFR "EF-TU receptor" [Arabidop | 0.934 | 0.401 | 0.446 | 1.4e-87 | |
| TAIR|locus:2075661 | 1025 | AT3G47110 [Arabidopsis thalian | 0.939 | 0.405 | 0.436 | 9.9e-87 | |
| TAIR|locus:2079142 | 1010 | AT3G47570 [Arabidopsis thalian | 0.932 | 0.408 | 0.425 | 2.4e-83 | |
| TAIR|locus:2075631 | 1009 | AT3G47090 [Arabidopsis thalian | 0.934 | 0.410 | 0.420 | 2.6e-79 | |
| TAIR|locus:2079157 | 1011 | AT3G47580 [Arabidopsis thalian | 0.934 | 0.409 | 0.406 | 5.5e-77 | |
| UNIPROTKB|Q40640 | 1025 | Xa21 "Receptor kinase-like pro | 0.925 | 0.4 | 0.415 | 3.1e-74 | |
| UNIPROTKB|O24435 | 813 | O24435 "Receptor kinase-like p | 0.769 | 0.419 | 0.394 | 1.2e-60 | |
| TAIR|locus:2170483 | 1173 | FLS2 "FLAGELLIN-SENSITIVE 2" [ | 0.920 | 0.347 | 0.337 | 8e-55 | |
| TAIR|locus:2054421 | 890 | AT2G41820 [Arabidopsis thalian | 0.891 | 0.443 | 0.342 | 6.1e-54 | |
| TAIR|locus:2046525 | 1124 | AT2G33170 [Arabidopsis thalian | 0.920 | 0.362 | 0.324 | 2.2e-53 |
| TAIR|locus:2149922 EFR "EF-TU receptor" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 875 (313.1 bits), Expect = 1.4e-87, P = 1.4e-87
Identities = 186/417 (44%), Positives = 265/417 (63%)
Query: 30 SNETDRLALLAIKLQL--HDPLGVTSSWNNSMSLCQWTGVTCGRRHQRVTRLDLRNQSIG 87
SNETD ALL K Q+ ++ V +SWN+S C W GVTCGRR +RV L+L +
Sbjct: 27 SNETDMQALLEFKSQVSENNKREVLASWNHSSPFCNWIGVTCGRRRERVISLNLGGFKLT 86
Query: 88 GPLSPYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSN 147
G +SP +GNLSFLR +NLA+N F IP ++GRL L+ L +S N G IP++LS S
Sbjct: 87 GVISPSIGNLSFLRLLNLADNSFGSTIPQKVGRLFRLQYLNMSYNLLEGRIPSSLSNCSR 146
Query: 148 LIELSVDTNYLVGEIPSAIGSLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILW 207
L + + +N+L +PS +GSL KL L + N++TG PAS+GNL+SL D N +
Sbjct: 147 LSTVDLSSNHLGHGVPSELGSLSKLAILDLSKNNLTGNFPASLGNLTSLQKLDFAYNQMR 206
Query: 208 GRI-DSLVQLRNLRLLDIAFNHFSGMIPPPIFNISSLEVISLSENRFTGSLPVDAGVNLP 266
G I D + +L + IA N FSG PP ++NISSLE +SL++N F+G+L D G LP
Sbjct: 207 GEIPDEVARLTQMVFFQIALNSFSGGFPPALYNISSLESLSLADNSFSGNLRADFGYLLP 266
Query: 267 NLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNL 326
NLR+L N FTG+IP +L+N S LE + S N SG + + F +L+NL +L + N+L
Sbjct: 267 NLRRLLLGTNQFTGAIPKTLANISSLERFDISSNYLSGSIPLSFGKLRNLWWLGIRNNSL 326
Query: 327 GTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNRISGTIP 386
G +++ L+FI +ANC++LE L NR G LP S+AN S+T+ + +G+N ISGTIP
Sbjct: 327 GNNSSSGLEFIGAVANCTQLEYLDVGYNRLGGELPASIANLSTTLTSLFLGQNLISGTIP 386
Query: 387 PGIRSHANLNWLTMDSNLFTGTIPPVIGELKNLQLLDLGGNFLQGSIPSSLGNLTLL 443
I + +L L++++N+ +G +P G+L NLQ++DL N + G IPS GN+T L
Sbjct: 387 HDIGNLVSLQELSLETNMLSGELPVSFGKLLNLQVVDLYSNAISGEIPSYFGNMTRL 443
|
|
| TAIR|locus:2075661 AT3G47110 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 867 (310.3 bits), Expect = 9.9e-87, P = 9.9e-87
Identities = 184/422 (43%), Positives = 265/422 (62%)
Query: 26 ICANS----NETDRLALLAIKLQLHDPLGVT-SSWNNSMSLCQWTGVTCGRRHQRVTRLD 80
+CA + ETD+ ALL K Q+ + V SWN+S+ LC WTGV CG +H+RVT +D
Sbjct: 28 VCAQTIRLTEETDKQALLEFKSQVSETSRVVLGSWNDSLPLCSWTGVKCGLKHRRVTGVD 87
Query: 81 LRNQSIGGPLSPYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPT 140
L + G +SP+VGNLSFLR +NLA+N F G IP ++G L L+ L +SNN F G IP
Sbjct: 88 LGGLKLTGVVSPFVGNLSFLRSLNLADNFFHGAIPSEVGNLFRLQYLNMSNNLFGGVIPV 147
Query: 141 NLSRRSNLIELSVDTNYLVGEIPSAIGSLFKLERLFIFHNHITGQLPASIGNLSSLLAFD 200
LS S+L L + +N+L +P GSL KL L + N++TG+ PAS+GNL+SL D
Sbjct: 148 VLSNCSSLSTLDLSSNHLEQGVPLEFGSLSKLVLLSLGRNNLTGKFPASLGNLTSLQMLD 207
Query: 201 VRENILWGRIDS-LVQLRNLRLLDIAFNHFSGMIPPPIFNISSLEVISLSENRFTGSLPV 259
N + G I + +L+ + IA N F+G+ PPPI+N+SSL +S++ N F+G+L
Sbjct: 208 FIYNQIEGEIPGDIARLKQMIFFRIALNKFNGVFPPPIYNLSSLIFLSITGNSFSGTLRP 267
Query: 260 DAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFL 319
D G LPNL+ L N+FTG+IP +LSN S L ++ N +G++ + F RL+NL L
Sbjct: 268 DFGSLLPNLQILYMGINSFTGTIPETLSNISSLRQLDIPSNHLTGKIPLSFGRLQNLLLL 327
Query: 320 NMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRN 379
+ N+LG ++ +LDF+ L NCS+L+ L N+ G LP +AN S+ + ++++G N
Sbjct: 328 GLNNNSLGNYSSGDLDFLGALTNCSQLQYLNVGFNKLGGQLPVFIANLSTQLTELSLGGN 387
Query: 380 RISGTIPPGIRSHANLNWLTMDSNLFTGTIPPVIGELKNLQLLDLGGNFLQGSIPSSLGN 439
ISG+IP GI + +L L + NL TG +PP +GEL L+ + L N L G IPSSLGN
Sbjct: 388 LISGSIPHGIGNLVSLQTLDLGENLLTGKLPPSLGELSELRKVLLYSNGLSGEIPSSLGN 447
Query: 440 LT 441
++
Sbjct: 448 IS 449
|
|
| TAIR|locus:2079142 AT3G47570 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 835 (299.0 bits), Expect = 2.4e-83, P = 2.4e-83
Identities = 177/416 (42%), Positives = 258/416 (62%)
Query: 30 SNETDRLALLAIKLQL-HDPLGVTSSWNNSMSLCQWTGVTCGRRHQRVTRLDLRNQSIGG 88
++ETDR ALL K Q+ D V SSWN+S LC W GVTCGR+++RVT L+L +GG
Sbjct: 21 TDETDRQALLQFKSQVSEDKRVVLSSWNHSFPLCNWKGVTCGRKNKRVTHLELGRLQLGG 80
Query: 89 PLSPYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNL 148
+SP +GNLSFL ++L N F G IP ++G+L+ LE L + N G IP L S L
Sbjct: 81 VISPSIGNLSFLVSLDLYENFFGGTIPQEVGQLSRLEYLDMGINYLRGPIPLGLYNCSRL 140
Query: 149 IELSVDTNYLVGEIPSAIGSLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWG 208
+ L +D+N L G +PS +GSL L +L ++ N++ G+LP S+GNL+ L + N L G
Sbjct: 141 LNLRLDSNRLGGSVPSELGSLTNLVQLNLYGNNMRGKLPTSLGNLTLLEQLALSHNNLEG 200
Query: 209 RIDS-LVQLRNLRLLDIAFNHFSGMIPPPIFNISSLEVISLSENRFTGSLPVDAGVNLPN 267
I S + QL + L + N+FSG+ PP ++N+SSL+++ + N F+G L D G+ LPN
Sbjct: 201 EIPSDVAQLTQIWSLQLVANNFSGVFPPALYNLSSLKLLGIGYNHFSGRLRPDLGILLPN 260
Query: 268 LRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLG 327
L + GN FTGSIP +LSN S LE + + N +G + F + NL L + N+LG
Sbjct: 261 LLSFNMGGNYFTGSIPTTLSNISTLERLGMNENNLTGSIPT-FGNVPNLKLLFLHTNSLG 319
Query: 328 TRTANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNRISGTIPP 387
+ ++ +L+F+ L NC++LE L RNR G LP S+AN S+ + + +G ISG+IP
Sbjct: 320 SDSSRDLEFLTSLTNCTQLETLGIGRNRLGGDLPISIANLSAKLVTLDLGGTLISGSIPY 379
Query: 388 GIRSHANLNWLTMDSNLFTGTIPPVIGELKNLQLLDLGGNFLQGSIPSSLGNLTLL 443
I + NL L +D N+ +G +P +G+L NL+ L L N L G IP+ +GN+T+L
Sbjct: 380 DIGNLINLQKLILDQNMLSGPLPTSLGKLLNLRYLSLFSNRLSGGIPAFIGNMTML 435
|
|
| TAIR|locus:2075631 AT3G47090 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 797 (285.6 bits), Expect = 2.6e-79, P = 2.6e-79
Identities = 175/416 (42%), Positives = 250/416 (60%)
Query: 30 SNETDRLALLAIKLQLHDPL-GVTSSWNNSMSLCQWTGVTCGRRHQRVTRLDLRNQSIGG 88
++E+DR ALL IK Q+ + S+WNNS LC W V CGR+H+RVTRLDL +GG
Sbjct: 21 TDESDRQALLEIKSQVSESKRDALSAWNNSFPLCSWKWVRCGRKHKRVTRLDLGGLQLGG 80
Query: 89 PLSPYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNL 148
+SP +GNLSFL Y++L+NN F G IP ++G L L+ L + N G IP +LS S L
Sbjct: 81 VISPSIGNLSFLIYLDLSNNSFGGTIPQEMGNLFRLKYLAVGFNYLEGEIPASLSNCSRL 140
Query: 149 IELSVDTNYLVGEIPSAIGSLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWG 208
+ L + +N L +PS +GSL KL L++ N + G+ P I NL+SL+ ++ N L G
Sbjct: 141 LYLDLFSNNLGDGVPSELGSLRKLLYLYLGLNDLKGKFPVFIRNLTSLIVLNLGYNHLEG 200
Query: 209 RI-DSLVQLRNLRLLDIAFNHFSGMIPPPIFNISSLEVISLSENRFTGSLPVDAGVNLPN 267
I D + L + L + N+FSG+ PP +N+SSLE + L N F+G+L D G LPN
Sbjct: 201 EIPDDIAMLSQMVSLTLTMNNFSGVFPPAFYNLSSLENLYLLGNGFSGNLKPDFGNLLPN 260
Query: 268 LRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLG 327
+ +LS +GN TG+IP +L+N S LEM +N+ +G +S +F +L+NL +L + N+LG
Sbjct: 261 IHELSLHGNFLTGAIPTTLANISTLEMFGIGKNRMTGSISPNFGKLENLHYLELANNSLG 320
Query: 328 TRTANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNRISGTIPP 387
+ + +L F++ L NCS L L + NR G LP S+ N S+ + + + N I G+IP
Sbjct: 321 SYSFGDLAFLDALTNCSHLHGLSVSYNRLGGALPTSIVNMSTELTVLNLKGNLIYGSIPH 380
Query: 388 GIRSHANLNWLTMDSNLFTGTIPPVIGELKNLQLLDLGGNFLQGSIPSSLGNLTLL 443
I + L L + NL TG +P +G L L L L N G IPS +GNLT L
Sbjct: 381 DIGNLIGLQSLLLADNLLTGPLPTSLGNLVGLGELILFSNRFSGEIPSFIGNLTQL 436
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| TAIR|locus:2079157 AT3G47580 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 775 (277.9 bits), Expect = 5.5e-77, P = 5.5e-77
Identities = 169/416 (40%), Positives = 252/416 (60%)
Query: 30 SNETDRLALLAIKLQLHD-PLGVTSSWNNSMSLCQWTGVTCGRRHQRVTRLDLRNQSIGG 88
++ETDR ALL K Q+ + V SSWNNS LC W VTCGR+H+RVT L+L +GG
Sbjct: 21 TDETDRQALLEFKSQVSEGKRDVLSSWNNSFPLCNWKWVTCGRKHKRVTHLNLGGLQLGG 80
Query: 89 PLSPYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNL 148
+SP +GN+SFL ++L++N F G IP ++G L LE L ++ NS G IP LS S L
Sbjct: 81 IVSPSIGNVSFLISLDLSDNAFGGIIPREVGNLFRLEHLYMAFNSLEGGIPATLSNCSRL 140
Query: 149 IELSVDTNYLVGEIPSAIGSLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWG 208
+ L + +N L +PS +GSL KL L + N++ G+LP S+GNL+SL + +N + G
Sbjct: 141 LNLDLYSNPLRQGVPSELGSLTKLVILDLGRNNLKGKLPRSLGNLTSLKSLGFTDNNIEG 200
Query: 209 RI-DSLVQLRNLRLLDIAFNHFSGMIPPPIFNISSLEVISLSENRFTGSLPVDAGVNLPN 267
+ D L +L + L ++ N F G+ PP I+N+S+LE + L + F+GSL D G LPN
Sbjct: 201 EVPDELARLSQMVGLGLSMNKFFGVFPPAIYNLSALEDLFLFGSGFSGSLKPDFGNLLPN 260
Query: 268 LRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLG 327
+R+L+ N+ G+IP +LSN S L+ ++N +G + +F ++ +L +L++ N LG
Sbjct: 261 IRELNLGENDLVGAIPTTLSNISTLQKFGINKNMMTGGIYPNFGKVPSLQYLDLSENPLG 320
Query: 328 TRTANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNRISGTIPP 387
+ T +L+FI+ L NC+ L+ L R G LP S+AN S+ + + + N G+IP
Sbjct: 321 SYTFGDLEFIDSLTNCTHLQLLSVGYTRLGGALPTSIANMSTELISLNLIGNHFFGSIPQ 380
Query: 388 GIRSHANLNWLTMDSNLFTGTIPPVIGELKNLQLLDLGGNFLQGSIPSSLGNLTLL 443
I + L L + N+ TG +P +G+L L LL L N + G IPS +GNLT L
Sbjct: 381 DIGNLIGLQRLQLGKNMLTGPLPTSLGKLLRLGLLSLYSNRMSGEIPSFIGNLTQL 436
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| UNIPROTKB|Q40640 Xa21 "Receptor kinase-like protein" [Oryza sativa (taxid:4530)] | Back alignment and assigned GO terms |
|---|
Score = 749 (268.7 bits), Expect = 3.1e-74, P = 3.1e-74
Identities = 174/419 (41%), Positives = 252/419 (60%)
Query: 34 DRLALLAIKLQLHDPLGVT-SSWNNSM--SLCQWTGVTCGRRHQR----VTRLDLRNQSI 86
D LALL+ K L G + +SWN S C W GV CGRR +R V +L LR+ ++
Sbjct: 32 DELALLSFKSSLLYQGGQSLASWNTSGHGQHCTWVGVVCGRRRRRHPHRVVKLLLRSSNL 91
Query: 87 GGPLSPYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRS 146
G +SP +GNLSFLR ++L +N GEIPP++ RL+ L+ L LS+NS G+IP + +
Sbjct: 92 SGIISPSLGNLSFLRELDLGDNYLSGEIPPELSRLSRLQLLELSDNSIQGSIPAAIGACT 151
Query: 147 NLIELSVDTNYLVGEIPSAIGSLFK-LERLFIFHNHITGQLPASIGNLSSLLAFDVRENI 205
L L + N L G IP IG+ K L L+++ N ++G++P+++GNL+SL FD+ N
Sbjct: 152 KLTSLDLSHNQLRGMIPREIGASLKHLSNLYLYKNGLSGEIPSALGNLTSLQEFDLSFNR 211
Query: 206 LWGRI-DSLVQLRNLRLLDIAFNHFSGMIPPPIFNISSLEVISLSENRFTGSLPVDAGVN 264
L G I SL QL +L +++ N+ SGMIP I+N+SSL S+ EN+ G +P +A
Sbjct: 212 LSGAIPSSLGQLSSLLTMNLGQNNLSGMIPNSIWNLSSLRAFSVRENKLGGMIPTNAFKT 271
Query: 265 LPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGIN 324
L L + N F G IP S++NAS L +I+ N FSG ++ F RL+NL+ L + N
Sbjct: 272 LHLLEVIDMGTNRFHGKIPASVANASHLTVIQIYGNLFSGIITSGFGRLRNLTELYLWRN 331
Query: 325 NLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNRISGT 384
TR ++ FI+ L NCSKL+ L N GVLP S +N S+++ +A+ N+I+G+
Sbjct: 332 LFQTREQDDWGFISDLTNCSKLQTLNLGENNLGGVLPNSFSNLSTSLSFLALELNKITGS 391
Query: 385 IPPGIRSHANLNWLTMDSNLFTGTIPPVIGELKNLQLLDLGGNFLQGSIPSSLGNLTLL 443
IP I + L L + +N F G++P +G LKNL +L N L GSIP ++GNLT L
Sbjct: 392 IPKDIGNLIGLQHLYLCNNNFRGSLPSSLGRLKNLGILLAYENNLSGSIPLAIGNLTEL 450
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| UNIPROTKB|O24435 O24435 "Receptor kinase-like protein" [Oryza sativa (taxid:4530)] | Back alignment and assigned GO terms |
|---|
Score = 621 (223.7 bits), Expect = 1.2e-60, P = 1.2e-60
Identities = 135/342 (39%), Positives = 204/342 (59%)
Query: 103 INLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSVDTNYLVGEI 162
+ L ++ G I P +G L+ L L LS+N SG IP LSR S L +L ++ N L GEI
Sbjct: 83 LRLRSSNLAGIISPSLGNLSFLRTLQLSDNHLSGKIPQELSRLSRLQQLVLNFNSLSGEI 142
Query: 163 PSAIGSLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRI-DSLVQLRNLRL 221
P+A+G+L L L + +N ++G +P+S+G L+ L + EN L G I S QLR L
Sbjct: 143 PAALGNLTSLSVLELTNNTLSGAIPSSLGKLTGLTDLALAENTLSGSIPSSFGQLRRLSF 202
Query: 222 LDIAFNHFSGMIPPPIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGS 281
L +AFN+ SG IP PI+NISSL + + N+ +G+LP +A NLP+L+++ N F G
Sbjct: 203 LSLAFNNLSGAIPDPIWNISSLTIFEVISNKLSGTLPTNAFSNLPSLQEVYMYYNQFHGR 262
Query: 282 IPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLA 341
IP S+ NAS + + N FSG V + R++NL L + N+ F+ L
Sbjct: 263 IPASIGNASNISIFTIGLNSFSGVVPPEIGRMRNLQRLELPETLSEAEETNDWKFMTALT 322
Query: 342 NCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNRISGTIPPGIRSHANLNWLTMD 401
NCS L+ + +F GVLP S++N SS++ +++ N+ISG++P I + NL +L++
Sbjct: 323 NCSNLQEVELGGCKFGGVLPDSVSNLSSSLVSLSIRDNKISGSLPRDIGNLVNLQYLSLA 382
Query: 402 SNLFTGTIPPVIGELKNLQLLDLGGNFLQGSIPSSLGNLTLL 443
+N TG++P +LKNL+ L + N L GS+P ++GNLT L
Sbjct: 383 NNSLTGSLPSSFSKLKNLRRLTVDNNKLIGSLPLTIGNLTQL 424
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| TAIR|locus:2170483 FLS2 "FLAGELLIN-SENSITIVE 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 576 (207.8 bits), Expect = 8.0e-55, P = 8.0e-55
Identities = 142/421 (33%), Positives = 215/421 (51%)
Query: 26 ICANSNETDRLALLAIKLQL-HDPLGVTSSWN--NSMSLCQWTGVTCGRRHQRVTRLDLR 82
+ S E + AL + K + +DPLGV S W S+ C WTG+TC V + L
Sbjct: 22 LAKQSFEPEIEALKSFKNGISNDPLGVLSDWTIIGSLRHCNWTGITCDSTGH-VVSVSLL 80
Query: 83 NQSIGGPLSPYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNL 142
+ + G LSP + NL++L+ ++L +N F G+IP +IG+L L L+L N FSG+IP+ +
Sbjct: 81 EKQLEGVLSPAIANLTYLQVLDLTSNSFTGKIPAEIGKLTELNQLILYLNYFSGSIPSGI 140
Query: 143 SRRSNLIELSVDTNYLVGEIPSAIGSLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVR 202
N+ L + N L G++P I L + +N++TG++P +G+L L F
Sbjct: 141 WELKNIFYLDLRNNLLSGDVPEEICKTSSLVLIGFDYNNLTGKIPECLGDLVHLQMFVAA 200
Query: 203 ENILWGRID-SLVQLRNLRLLDIAFNHFSGMIPPPIFNISSLEVISLSENRFTGSLPVDA 261
N L G I S+ L NL LD++ N +G IP N+ +L+ + L+EN G +P +
Sbjct: 201 GNHLTGSIPVSIGTLANLTDLDLSGNQLTGKIPRDFGNLLNLQSLVLTENLLEGDIPAEI 260
Query: 262 GVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNM 321
G N +L QL N TG IP L N +L+ + +N+ + + RL L+ L +
Sbjct: 261 G-NCSSLVQLELYDNQLTGKIPAELGNLVQLQALRIYKNKLTSSIPSSLFRLTQLTHLGL 319
Query: 322 GINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNRI 381
N+L + E+ F+ LE L + N F G PQS+ N + + + +G N I
Sbjct: 320 SENHLVGPISEEIGFLE------SLEVLTLHSNNFTGEFPQSITNLRN-LTVLTVGFNNI 372
Query: 382 SGTIPPGIRSHANLNWLTMDSNLFTGTIPPVIGELKNLQLLDLGGNFLQGSIPSSLGNLT 441
SG +P + NL L+ NL TG IP I L+LLDL N + G IP G +
Sbjct: 373 SGELPADLGLLTNLRNLSAHDNLLTGPIPSSISNCTGLKLLDLSHNQMTGEIPRGFGRMN 432
Query: 442 L 442
L
Sbjct: 433 L 433
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| TAIR|locus:2054421 AT2G41820 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 563 (203.2 bits), Expect = 6.1e-54, P = 6.1e-54
Identities = 140/409 (34%), Positives = 201/409 (49%)
Query: 33 TDRLALLAIKLQLHDPLGVTSSWNNSMSLCQWTGVTCGRRHQRVTRLDLRNQSIGGPLSP 92
+D L+AI +L GV +N C W G+ CG + V LDL + G ++
Sbjct: 26 SDEATLVAINREL----GVPGWSSNGTDYCTWVGLKCGVNNSFVEMLDLSGLQLRGNVT- 80
Query: 93 YVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELS 152
+ +L L++++L+ N F G IP G L+ LE L LS N F G IP + L +
Sbjct: 81 LISDLRSLKHLDLSGNNFNGRIPTSFGNLSELEFLDLSLNRFVGAIPVEFGKLRGLRAFN 140
Query: 153 VDTNYLVGEIPSAIGSLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRI-D 211
+ N LVGEIP + L +LE + N + G +P +GNLSSL F EN L G I +
Sbjct: 141 ISNNLLVGEIPDELKVLERLEEFQVSGNGLNGSIPHWVGNLSSLRVFTAYENDLVGEIPN 200
Query: 212 SLVQLRNLRLLDIAFNHFSGMIPPPIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQL 271
L + L LL++ N G IP IF L+V+ L++NR TG LP G+ L +
Sbjct: 201 GLGLVSELELLNLHSNQLEGKIPKGIFEKGKLKVLVLTQNRLTGELPEAVGI-CSGLSSI 259
Query: 272 SPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLGTRTA 331
N G IP ++ N S L E +N SG + +FS+ NL+ LN+ N
Sbjct: 260 RIGNNELVGVIPRTIGNISGLTYFEADKNNLSGEIVAEFSKCSNLTLLNLAANGFAGTIP 319
Query: 332 NELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNRISGTIPPGIRS 391
EL L N L+ L + N G +P+S S + ++ + NR++GTIP + S
Sbjct: 320 TEL---GQLIN---LQELILSGNSLFGEIPKSFLG-SGNLNKLDLSNNRLNGTIPKELCS 372
Query: 392 HANLNWLTMDSNLFTGTIPPVIGELKNLQLLDLGGNFLQGSIPSSLGNL 440
L +L +D N G IP IG L L LG N+L G+IP +G +
Sbjct: 373 MPRLQYLLLDQNSIRGDIPHEIGNCVKLLQLQLGRNYLTGTIPPEIGRM 421
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| TAIR|locus:2046525 AT2G33170 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 562 (202.9 bits), Expect = 2.2e-53, P = 2.2e-53
Identities = 139/429 (32%), Positives = 220/429 (51%)
Query: 28 ANSNETDRLALLAIKLQ-LHDPLGVTSSWNN-SMSLCQWTGVTCGRRHQR-------VTR 78
+ S +D LL +K + D L +WN + C W GV C + VT
Sbjct: 30 SESLNSDGQFLLELKNRGFQDSLNRLHNWNGIDETPCNWIGVNCSSQGSSSSSNSLVVTS 89
Query: 79 LDLRNQSIGGPLSPYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTI 138
LDL + ++ G +SP +G L L Y+NLA N G+IP +IG + LE + L+NN F G+I
Sbjct: 90 LDLSSMNLSGIVSPSIGGLVNLVYLNLAYNALTGDIPREIGNCSKLEVMFLNNNQFGGSI 149
Query: 139 PTNLSRRSNLIELSVDTNYLVGEIPSAIGSLFKLERLFIFHNHITGQLPASIGNLSSLLA 198
P +++ S L ++ N L G +P IG L+ LE L + N++TG LP S+GNL+ L
Sbjct: 150 PVEINKLSQLRSFNICNNKLSGPLPEEIGDLYNLEELVAYTNNLTGPLPRSLGNLNKLTT 209
Query: 199 FDVRENILWGRIDSLV-QLRNLRLLDIAFNHFSGMIPPPIFNISSLEVISLSENRFTGSL 257
F +N G I + + + NL+LL +A N SG +P I + L+ + L +N+F+G +
Sbjct: 210 FRAGQNDFSGNIPTEIGKCLNLKLLGLAQNFISGELPKEIGMLVKLQEVILWQNKFSGFI 269
Query: 258 PVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLS 317
P D G NL +L L+ GN+ G IP + N L+ + +NQ +G + + +L +
Sbjct: 270 PKDIG-NLTSLETLALYGNSLVGPIPSEIGNMKSLKKLYLYQNQLNGTIPKELGKLSKVM 328
Query: 318 FLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMG 377
++ N L EL I S+L LY +N+ G++P ++ + K + +
Sbjct: 329 EIDFSENLLSGEIPVELSKI------SELRLLYLFQNKLTGIIPNELSKLRNLAK-LDLS 381
Query: 378 RNRISGTIPPGIRSHANLNWLTMDSNLFTGTIPPVIGELKNLQLLDLGGNFLQGSIPSSL 437
N ++G IPPG ++ ++ L + N +G IP +G L ++D N L G IP +
Sbjct: 382 INSLTGPIPPGFQNLTSMRQLQLFHNSLSGVIPQGLGLYSPLWVVDFSENQLSGKIPPFI 441
Query: 438 ---GNLTLL 443
NL LL
Sbjct: 442 CQQSNLILL 450
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | eugene3.01680029 | hypothetical protein (1021 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 443 | |||
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 3e-58 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 5e-56 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 2e-36 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 7e-15 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 3e-11 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 4e-11 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 2e-10 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 1e-09 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 1e-09 | |
| pfam08263 | 42 | pfam08263, LRRNT_2, Leucine rich repeat N-terminal | 2e-08 | |
| COG4886 | 394 | COG4886, COG4886, Leucine-rich repeat (LRR) protei | 4e-08 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 6e-08 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 4e-07 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 7e-06 | |
| COG4886 | 394 | COG4886, COG4886, Leucine-rich repeat (LRR) protei | 1e-05 | |
| PLN03210 | 1153 | PLN03210, PLN03210, Resistant to P | 1e-04 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 4e-04 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 6e-04 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 205 bits (524), Expect = 3e-58
Identities = 131/407 (32%), Positives = 213/407 (52%), Gaps = 44/407 (10%)
Query: 79 LDLRNQSIGGPLSPYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTI 138
LDL + G + + NL+ L ++ LA+N +G+IP ++G++ L+ + L N+ SG I
Sbjct: 169 LDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEI 228
Query: 139 PTNLSRRSNLIELSVDTNYLVGEIPSAIGSLFKLERLFIFHNHITGQLPASIGNLSSLLA 198
P + ++L L + N L G IPS++G+L L+ LF++ N ++G +P SI +L L++
Sbjct: 229 PYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLIS 288
Query: 199 FDVRENILWGRIDSLV-QLRNLRLLDIAFNHFSGMIPPPIFNISSLEVISLSENRFTGSL 257
D+ +N L G I LV QL+NL +L + N+F+G IP + ++ L+V+ L N+F+G +
Sbjct: 289 LDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEI 348
Query: 258 PVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRL-EMIEFS------------------ 298
P + G + NL L + NN TG IP L ++ L ++I FS
Sbjct: 349 PKNLGKH-NNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLR 407
Query: 299 -----RNQFSGRVSVDFSRLKNLSFLNMGINNLGTRTAN------ELDFINLLAN----- 342
N FSG + +F++L + FL++ NNL R + L ++L N
Sbjct: 408 RVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGG 467
Query: 343 ------CSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNRISGTIPPGIRSHANLN 396
+LE L +RN+F G +P+ + + S + Q+ + N++SG IP + S L
Sbjct: 468 LPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSE-LMQLKLSENKLSGEIPDELSSCKKLV 526
Query: 397 WLTMDSNLFTGTIPPVIGELKNLQLLDLGGNFLQGSIPSSLGNLTLL 443
L + N +G IP E+ L LDL N L G IP +LGN+ L
Sbjct: 527 SLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESL 573
|
Length = 968 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 199 bits (507), Expect = 5e-56
Identities = 137/419 (32%), Positives = 219/419 (52%), Gaps = 15/419 (3%)
Query: 27 CANSNETDRLALLAIKLQLHDPLGVTSSWNNSMSLCQWTGVTCGRRHQRVTRLDLRNQSI 86
++ E + LL+ K ++DPL S+WN+S +C W G+TC RV +DL ++I
Sbjct: 25 MLHAEELE--LLLSFKSSINDPLKYLSNWNSSADVCLWQGITC-NNSSRVVSIDLSGKNI 81
Query: 87 GGPLSPYVGNLSFLRYINLANNGFLGEIPPQIGRLNM-LEGLVLSNNSFSGTIPTNLSRR 145
G +S + L +++ INL+NN G IP I + L L LSNN+F+G+IP
Sbjct: 82 SGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSI-- 139
Query: 146 SNLIELSVDTNYLVGEIPSAIGSLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENI 205
NL L + N L GEIP+ IGS L+ L + N + G++P S+ NL+SL + N
Sbjct: 140 PNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQ 199
Query: 206 LWGRIDS-LVQLRNLRLLDIAFNHFSGMIPPPIFNISSLEVISLSENRFTGSLPVDAGVN 264
L G+I L Q+++L+ + + +N+ SG IP I ++SL + L N TG +P G N
Sbjct: 200 LVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLG-N 258
Query: 265 LPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGIN 324
L NL+ L N +G IP S+ + +L ++ S N SG + +L+NL L++ N
Sbjct: 259 LKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSN 318
Query: 325 NLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNRISGT 384
N + L + +L+ L N+F G +P+++ + + + + N ++G
Sbjct: 319 NFTGKIPVA------LTSLPRLQVLQLWSNKFSGEIPKNLGK-HNNLTVLDLSTNNLTGE 371
Query: 385 IPPGIRSHANLNWLTMDSNLFTGTIPPVIGELKNLQLLDLGGNFLQGSIPSSLGNLTLL 443
IP G+ S NL L + SN G IP +G ++L+ + L N G +PS L L+
Sbjct: 372 IPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLV 430
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Length = 968 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 141 bits (358), Expect = 2e-36
Identities = 103/339 (30%), Positives = 165/339 (48%), Gaps = 34/339 (10%)
Query: 74 QRVTRLDLRNQSIGGPLSPYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNS 133
Q++ LDL + S+ G + V L L ++L +N F G+IP + L L+ L L +N
Sbjct: 284 QKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNK 343
Query: 134 FSGTIPTNLSRRSNLIELSVDTNYLVGEIPSAIGSLFKLERLFIFHNHITGQLPASIGNL 193
FSG IP NL + +NL L + TN L GEIP + S L +L +F N + G++P S+G
Sbjct: 344 FSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGAC 403
Query: 194 SSLLAFDVRENILWGRIDS-LVQLRNLRLLDIAFNHFSGMIPPPIFNISSLEVISLSENR 252
SL +++N G + S +L + LDI+ N+ G I +++ SL+++SL+ N+
Sbjct: 404 RSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNK 463
Query: 253 FTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSR 312
F G LP + RLE ++ SRNQFSG V
Sbjct: 464 FFGGLP--------------------------DSFGSKRLENLDLSRNQFSGAVPRKLGS 497
Query: 313 LKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIK 372
L L L + N L +E L++C KL L + N+ G +P S + +
Sbjct: 498 LSELMQLKLSENKLSGEIPDE------LSSCKKLVSLDLSHNQLSGQIPASFSEM-PVLS 550
Query: 373 QIAMGRNRISGTIPPGIRSHANLNWLTMDSNLFTGTIPP 411
Q+ + +N++SG IP + + +L + + N G++P
Sbjct: 551 QLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPS 589
|
Length = 968 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 76.4 bits (188), Expect = 7e-15
Identities = 48/140 (34%), Positives = 72/140 (51%), Gaps = 9/140 (6%)
Query: 37 ALLAIKLQLHDPLGVTSSWNNSMSLCQ---WTGVTCG----RRHQRVTRLDLRNQSIGGP 89
AL +K L PL WN + Q W+G C + + L L NQ + G
Sbjct: 376 ALQTLKSSLGLPLRF--GWNGDPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGF 433
Query: 90 LSPYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLI 149
+ + L L+ INL+ N G IPP +G + LE L LS NSF+G+IP +L + ++L
Sbjct: 434 IPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLR 493
Query: 150 ELSVDTNYLVGEIPSAIGSL 169
L+++ N L G +P+A+G
Sbjct: 494 ILNLNGNSLSGRVPAALGGR 513
|
Length = 623 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 65.6 bits (160), Expect = 3e-11
Identities = 42/118 (35%), Positives = 63/118 (53%)
Query: 72 RHQRVTRLDLRNQSIGGPLSPYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSN 131
+R+ LDL G + +G+LS L + L+ N GEIP ++ L L LS+
Sbjct: 473 GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSH 532
Query: 132 NSFSGTIPTNLSRRSNLIELSVDTNYLVGEIPSAIGSLFKLERLFIFHNHITGQLPAS 189
N SG IP + S L +L + N L GEIP +G++ L ++ I HNH+ G LP++
Sbjct: 533 NQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPST 590
|
Length = 968 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 64.5 bits (157), Expect = 4e-11
Identities = 33/93 (35%), Positives = 51/93 (54%)
Query: 99 FLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSVDTNYL 158
F+ + L N G G IP I +L L+ + LS NS G IP +L ++L L + N
Sbjct: 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSF 478
Query: 159 VGEIPSAIGSLFKLERLFIFHNHITGQLPASIG 191
G IP ++G L L L + N ++G++PA++G
Sbjct: 479 NGSIPESLGQLTSLRILNLNGNSLSGRVPAALG 511
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 62.5 bits (152), Expect = 2e-10
Identities = 30/86 (34%), Positives = 50/86 (58%), Gaps = 1/86 (1%)
Query: 357 QGVLPQSMANFSSTIKQIAMGRNRISGTIPPGIRSHANLNWLTMDSNLFTGTIPPVIGEL 416
+G +P ++ ++ I + N I G IPP + S +L L + N F G+IP +G+L
Sbjct: 431 RGFIPNDISKLRH-LQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQL 489
Query: 417 KNLQLLDLGGNFLQGSIPSSLGNLTL 442
+L++L+L GN L G +P++LG L
Sbjct: 490 TSLRILNLNGNSLSGRVPAALGGRLL 515
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 60.2 bits (146), Expect = 1e-09
Identities = 31/76 (40%), Positives = 51/76 (67%), Gaps = 1/76 (1%)
Query: 211 DSLVQLRNLRLLDIAFNHFSGMIPPPIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQ 270
+ + +LR+L+ ++++ N G IPP + +I+SLEV+ LS N F GS+P G L +LR
Sbjct: 436 NDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLG-QLTSLRI 494
Query: 271 LSPNGNNFTGSIPVSL 286
L+ NGN+ +G +P +L
Sbjct: 495 LNLNGNSLSGRVPAAL 510
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 59.8 bits (145), Expect = 1e-09
Identities = 32/97 (32%), Positives = 55/97 (56%)
Query: 124 LEGLVLSNNSFSGTIPTNLSRRSNLIELSVDTNYLVGEIPSAIGSLFKLERLFIFHNHIT 183
++GL L N G IP ++S+ +L +++ N + G IP ++GS+ LE L + +N
Sbjct: 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFN 479
Query: 184 GQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLR 220
G +P S+G L+SL ++ N L GR+ + + R L
Sbjct: 480 GSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLH 516
|
Length = 623 |
| >gnl|CDD|219766 pfam08263, LRRNT_2, Leucine rich repeat N-terminal domain | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 2e-08
Identities = 24/41 (58%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Query: 31 NETDRLALLAIKLQL-HDPLGVTSSWNNSMS-LCQWTGVTC 69
DR ALLA K L DP G SSWN S S C WTGVTC
Sbjct: 1 LNDDRDALLAFKSSLNGDPSGALSSWNPSSSDPCSWTGVTC 41
|
Leucine Rich Repeats pfam00560 are short sequence motifs present in a number of proteins with diverse functions and cellular locations. Leucine Rich Repeats are often flanked by cysteine rich domains. This domain is often found at the N-terminus of tandem leucine rich repeats. Length = 42 |
| >gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Score = 55.0 bits (132), Expect = 4e-08
Identities = 57/214 (26%), Positives = 91/214 (42%), Gaps = 8/214 (3%)
Query: 90 LSPYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLI 149
S + NL L ++L N I + L L L L NN+ + P +SNL
Sbjct: 85 GSENLLNLLPLPSLDLNLNRLRSNISE-LLELTNLTSLDLDNNNITDIPPLIGLLKSNLK 143
Query: 150 ELSVDTNYLVGEIPSAIGSLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGR 209
EL + N + +PS + +L L+ L + N ++ LP + NLS+L D+ N +
Sbjct: 144 ELDLSDNKI-ESLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKISDL 201
Query: 210 IDSLVQLRNLRLLDIAFNHFSGMIPPPIFNISSLEVISLSENRFTGSLPVDAGVNLPNLR 269
+ L L LD++ N + + N+ +L + LS N+ NL NL
Sbjct: 202 PPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLEDLPESIG--NLSNLE 258
Query: 270 QLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFS 303
L + N S SL + + L ++ S N S
Sbjct: 259 TLDLSNNQ--ISSISSLGSLTNLRELDLSGNSLS 290
|
Length = 394 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 54.4 bits (131), Expect = 6e-08
Identities = 31/112 (27%), Positives = 55/112 (49%), Gaps = 23/112 (20%)
Query: 151 LSVDTNYLVGEIPSAIGSLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRI 210
L +D L G IP+ I L L+ + + N I G +P S+G+++SL
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSL-------------- 468
Query: 211 DSLVQLRNLRLLDIAFNHFSGMIPPPIFNISSLEVISLSENRFTGSLPVDAG 262
+LD+++N F+G IP + ++SL +++L+ N +G +P G
Sbjct: 469 ---------EVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALG 511
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 51.7 bits (124), Expect = 4e-07
Identities = 26/61 (42%), Positives = 34/61 (55%)
Query: 383 GTIPPGIRSHANLNWLTMDSNLFTGTIPPVIGELKNLQLLDLGGNFLQGSIPSSLGNLTL 442
G IP I +L + + N G IPP +G + +L++LDL N GSIP SLG LT
Sbjct: 432 GFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTS 491
Query: 443 L 443
L
Sbjct: 492 L 492
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 7e-06
Identities = 28/76 (36%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 231 GMIPPPIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNAS 290
G IP I + L+ I+LS N G++P G ++ +L L + N+F GSIP SL +
Sbjct: 432 GFIPNDISKLRHLQSINLSGNSIRGNIPPSLG-SITSLEVLDLSYNSFNGSIPESLGQLT 490
Query: 291 RLEMIEFSRNQFSGRV 306
L ++ + N SGRV
Sbjct: 491 SLRILNLNGNSLSGRV 506
|
Length = 623 |
| >gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Score = 46.5 bits (110), Expect = 1e-05
Identities = 59/203 (29%), Positives = 100/203 (49%), Gaps = 8/203 (3%)
Query: 76 VTRLDLRNQSIGGPLSPYVGNL-SFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSF 134
+T LDL N +I + P +G L S L+ ++L++N + +P + L L+ L LS N
Sbjct: 118 LTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNK-IESLPSPLRNLPNLKNLDLSFNDL 175
Query: 135 SGTIPTNLSRRSNLIELSVDTNYLVGEIPSAIGSLFKLERLFIFHNHITGQLPASIGNLS 194
S +P LS SNL L + N + ++P I L LE L + +N I +L +S+ NL
Sbjct: 176 S-DLPKLLSNLSNLNNLDLSGN-KISDLPPEIELLSALEELDLSNNSII-ELLSSLSNLK 232
Query: 195 SLLAFDVRENILWGRIDSLVQLRNLRLLDIAFNHFSGMIPPPIFNISSLEVISLSENRFT 254
+L ++ N L +S+ L NL LD ++ + ++++L + LS N +
Sbjct: 233 NLSGLELSNNKLEDLPESIGNLSNLETLD--LSNNQISSISSLGSLTNLRELDLSGNSLS 290
Query: 255 GSLPVDAGVNLPNLRQLSPNGNN 277
+LP+ A + L L+
Sbjct: 291 NALPLIALLLLLLELLLNLLLTL 313
|
Length = 394 |
| >gnl|CDD|215633 PLN03210, PLN03210, Resistant to P | Back alignment and domain information |
|---|
Score = 44.5 bits (105), Expect = 1e-04
Identities = 83/361 (22%), Positives = 143/361 (39%), Gaps = 52/361 (14%)
Query: 100 LRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRS----NLIELSVDT 155
L + L++ L E+P I LN LE L +S +PT ++ +S NL S
Sbjct: 659 LETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCSRLK 718
Query: 156 NYLVGEIPSAIGSLFKLERLFIFHNHITGQLPAS--IGNLSSLLAFDVRENILWGRIDSL 213
++ +I + I L + P++ + NL L+ +++ LW R+ L
Sbjct: 719 SFP--DISTNISWL-------DLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPL 769
Query: 214 VQLRNLRLLDIAFNHFSGM-----IPPPIFNISSLEVISLSENRFTGSLPVDAGVNLPNL 268
L + + S + +P I N+ LE + + +LP G+NL +L
Sbjct: 770 TPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLP--TGINLESL 827
Query: 269 RQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNM-GINNLG 327
L +G + + P +N S L + + V + NLSFL+M G NNL
Sbjct: 828 ESLDLSGCSRLRTFPDISTNISDLNLSRTGIEE----VPWWIEKFSNLSFLDMNGCNNL- 882
Query: 328 TRTANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNRISGTIPP 387
+ N SKL+ L F + A+++ + ++AM + I +P
Sbjct: 883 ---------QRVSLNISKLKHL--ETVDFSDCGALTEASWNGSPSEVAMATDNIHSKLP- 930
Query: 388 GIRSHANLNWLTMDSNLFTGTIPPVIGELKNLQLLDLGGN-----FLQGSIPSSLGNLTL 442
S +N+ N F ++ + + L L G F + +SL N+ L
Sbjct: 931 ---STVCINF----INCFNLDQEALLQQQSIFKQLILSGEEVPSYFTHRTTGASLTNIPL 983
Query: 443 L 443
L
Sbjct: 984 L 984
|
syringae 6; Provisional. Length = 1153 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 4e-04
Identities = 25/75 (33%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 255 GSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLK 314
G +P D L +L+ ++ +GN+ G+IP SL + + LE+++ S N F+G + +L
Sbjct: 432 GFIPNDIS-KLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLT 490
Query: 315 NLSFLNMGINNLGTR 329
+L LN+ N+L R
Sbjct: 491 SLRILNLNGNSLSGR 505
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 6e-04
Identities = 20/46 (43%), Positives = 32/46 (69%)
Query: 398 LTMDSNLFTGTIPPVIGELKNLQLLDLGGNFLQGSIPSSLGNLTLL 443
L +D+ G IP I +L++LQ ++L GN ++G+IP SLG++T L
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSL 468
|
Length = 623 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 443 | |||
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 100.0 | |
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 100.0 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 100.0 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 100.0 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 99.98 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 99.97 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 99.97 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 99.96 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 99.94 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 99.93 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 99.92 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 99.92 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 99.9 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 99.9 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 99.88 | |
| KOG4237 | 498 | consensus Extracellular matrix protein slit, conta | 99.86 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 99.83 | |
| KOG4237 | 498 | consensus Extracellular matrix protein slit, conta | 99.83 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 99.82 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 99.8 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 99.71 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 99.69 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 99.63 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 99.3 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 99.29 | |
| KOG1909 | 382 | consensus Ran GTPase-activating protein [RNA proce | 99.28 | |
| KOG0532 | 722 | consensus Leucine-rich repeat (LRR) protein, conta | 99.27 | |
| KOG1909 | 382 | consensus Ran GTPase-activating protein [RNA proce | 99.26 | |
| KOG0532 | 722 | consensus Leucine-rich repeat (LRR) protein, conta | 99.24 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 99.22 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 99.2 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 99.16 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 99.13 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 99.13 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 99.08 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 99.06 | |
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 98.99 | |
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 98.98 | |
| KOG0531 | 414 | consensus Protein phosphatase 1, regulatory subuni | 98.86 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 98.82 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 98.77 | |
| KOG0531 | 414 | consensus Protein phosphatase 1, regulatory subuni | 98.75 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 98.7 | |
| KOG1859 | 1096 | consensus Leucine-rich repeat proteins [General fu | 98.58 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 98.57 | |
| PF08263 | 43 | LRRNT_2: Leucine rich repeat N-terminal domain; In | 98.57 | |
| KOG4579 | 177 | consensus Leucine-rich repeat (LRR) protein associ | 98.54 | |
| KOG2982 | 418 | consensus Uncharacterized conserved protein [Funct | 98.5 | |
| COG5238 | 388 | RNA1 Ran GTPase-activating protein (RanGAP) involv | 98.46 | |
| COG5238 | 388 | RNA1 Ran GTPase-activating protein (RanGAP) involv | 98.45 | |
| KOG1859 | 1096 | consensus Leucine-rich repeat proteins [General fu | 98.39 | |
| KOG4579 | 177 | consensus Leucine-rich repeat (LRR) protein associ | 98.33 | |
| KOG2982 | 418 | consensus Uncharacterized conserved protein [Funct | 98.29 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 98.06 | |
| KOG1644 | 233 | consensus U2-associated snRNP A' protein [RNA proc | 98.03 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 97.94 | |
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 97.93 | |
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 97.93 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 97.85 | |
| KOG4341 | 483 | consensus F-box protein containing LRR [General fu | 97.67 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 97.66 | |
| KOG4341 | 483 | consensus F-box protein containing LRR [General fu | 97.62 | |
| KOG1644 | 233 | consensus U2-associated snRNP A' protein [RNA proc | 97.62 | |
| PF13306 | 129 | LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_ | 97.19 | |
| PF13306 | 129 | LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_ | 97.15 | |
| KOG2123 | 388 | consensus Uncharacterized conserved protein [Funct | 96.95 | |
| PF00560 | 22 | LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le | 96.92 | |
| KOG2739 | 260 | consensus Leucine-rich acidic nuclear protein [Cel | 96.89 | |
| KOG2739 | 260 | consensus Leucine-rich acidic nuclear protein [Cel | 96.85 | |
| KOG2123 | 388 | consensus Uncharacterized conserved protein [Funct | 96.46 | |
| KOG1947 | 482 | consensus Leucine rich repeat proteins, some prote | 96.27 | |
| PF00560 | 22 | LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le | 95.44 | |
| KOG4308 | 478 | consensus LRR-containing protein [Function unknown | 95.21 | |
| PF13504 | 17 | LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO | 94.6 | |
| KOG1947 | 482 | consensus Leucine rich repeat proteins, some prote | 94.5 | |
| KOG4308 | 478 | consensus LRR-containing protein [Function unknown | 94.43 | |
| KOG0473 | 326 | consensus Leucine-rich repeat protein [Function un | 91.91 | |
| KOG3864 | 221 | consensus Uncharacterized conserved protein [Funct | 91.76 | |
| KOG0473 | 326 | consensus Leucine-rich repeat protein [Function un | 91.4 | |
| smart00370 | 26 | LRR Leucine-rich repeats, outliers. | 91.09 | |
| smart00369 | 26 | LRR_TYP Leucine-rich repeats, typical (most popula | 91.09 | |
| smart00370 | 26 | LRR Leucine-rich repeats, outliers. | 90.82 | |
| smart00369 | 26 | LRR_TYP Leucine-rich repeats, typical (most popula | 90.82 | |
| PF13516 | 24 | LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI | 90.7 | |
| PF13516 | 24 | LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI | 90.26 | |
| KOG3864 | 221 | consensus Uncharacterized conserved protein [Funct | 86.2 | |
| KOG4242 | 553 | consensus Predicted myosin-I-binding protein [Cell | 82.94 | |
| smart00364 | 26 | LRR_BAC Leucine-rich repeats, bacterial type. | 82.62 |
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-52 Score=448.12 Aligned_cols=407 Identities=32% Similarity=0.521 Sum_probs=266.3
Q ss_pred CHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCCccceeeCCCCCcEEEEEcCCCCCcccccccccCCCCCCEEeCCCCcC
Q 040495 31 NETDRLALLAIKLQLHDPLGVTSSWNNSMSLCQWTGVTCGRRHQRVTRLDLRNQSIGGPLSPYVGNLSFLRYINLANNGF 110 (443)
Q Consensus 31 ~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~c~w~gv~c~~~~~~v~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~ 110 (443)
++.|+.+|++||.++.+|.+...+|....+||.|.|++|+.. .+|+.|+++++.+.|.++..+..+++|++|++++|.+
T Consensus 27 ~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~c~w~gv~c~~~-~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~ 105 (968)
T PLN00113 27 HAEELELLLSFKSSINDPLKYLSNWNSSADVCLWQGITCNNS-SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQL 105 (968)
T ss_pred CHHHHHHHHHHHHhCCCCcccCCCCCCCCCCCcCcceecCCC-CcEEEEEecCCCccccCChHHhCCCCCCEEECCCCcc
Confidence 458999999999999888878899988889999999999864 6899999999999999999999999999999999999
Q ss_pred CCCCchhhc-CCCccCeEEccCCCCCCCCChhhhcCCCCceeeccCCcccccCCccccCCcCccEeeeeccccCccCCcc
Q 040495 111 LGEIPPQIG-RLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSVDTNYLVGEIPSAIGSLFKLERLFIFHNHITGQLPAS 189 (443)
Q Consensus 111 ~~~~~~~l~-~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~ 189 (443)
.+.+|..+. .+++|++|++++|.+++.+|. ..+++|++|++++|.+.+.+|..++++++|++|++++|.+.+.+|..
T Consensus 106 ~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~ 183 (968)
T PLN00113 106 SGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNS 183 (968)
T ss_pred CCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChh
Confidence 988887765 788888888888877766664 34566666666666666666666666666666666666666666666
Q ss_pred ccCCCCCCEEEccCCcCCccc-ccccCCCCCCEEEcccccCCCCCCccccCCCCCcEEEcccCcCcccCChhhhcCCCCC
Q 040495 190 IGNLSSLLAFDVRENILWGRI-DSLVQLRNLRLLDIAFNHFSGMIPPPIFNISSLEVISLSENRFTGSLPVDAGVNLPNL 268 (443)
Q Consensus 190 l~~l~~L~~L~l~~n~l~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L 268 (443)
+.++++|++|++++|.+.+.. ..+..+++|++|++++|.+.+.+|..+.++++|++|++++|.+++.+|..+. ++++|
T Consensus 184 ~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L 262 (968)
T PLN00113 184 LTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLG-NLKNL 262 (968)
T ss_pred hhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHh-CCCCC
Confidence 666666666666666655444 4555566666666666666655665566666666666666665555555444 55555
Q ss_pred cEEeCCCCcCCccCCccCcCCCCCCEEecccCcCccccchhhhCCCCCCEEEccCCCCcccCCCchh-------------
Q 040495 269 RQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANELD------------- 335 (443)
Q Consensus 269 ~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~------------- 335 (443)
++|++++|++.+.+|..+.++++|++|++++|.+.+.+|..+..+++|+.|++++|.+.+..+..+.
T Consensus 263 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n 342 (968)
T PLN00113 263 QYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSN 342 (968)
T ss_pred CEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCC
Confidence 5666555555555555555555555555555555555555555555555555555555554441000
Q ss_pred -----hHhhhcCCCCCCEEEccCCcCcccCChhHhhhccCCCEEeccCCcCeecCchhhhcCCCCCeEeCcCCcCcccCc
Q 040495 336 -----FINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNRISGTIPPGIRSHANLNWLTMDSNLFTGTIP 410 (443)
Q Consensus 336 -----~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~n~~~~~~p 410 (443)
.+..+..+++|+.|++++|++++.+|..+... ++++.|++++|++.+.+|..+..+++|+.|++++|.+++.+|
T Consensus 343 ~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~-~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p 421 (968)
T PLN00113 343 KFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSS-GNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELP 421 (968)
T ss_pred CCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCc-CCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECC
Confidence 00334444555555555555554555444442 445555555555555555555556666666666666666666
Q ss_pred hhhcCCCCCCEEEccCCcCcccCCccccCCCC
Q 040495 411 PVIGELKNLQLLDLGGNFLQGSIPSSLGNLTL 442 (443)
Q Consensus 411 ~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~ 442 (443)
..+..+++|+.|++++|+++|.+|..++.+++
T Consensus 422 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 453 (968)
T PLN00113 422 SEFTKLPLVYFLDISNNNLQGRINSRKWDMPS 453 (968)
T ss_pred hhHhcCCCCCEEECcCCcccCccChhhccCCC
Confidence 66666666666666666666666655554443
|
|
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-44 Score=387.10 Aligned_cols=368 Identities=34% Similarity=0.588 Sum_probs=271.5
Q ss_pred CcEEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCCCCCchhhcCCCccCeEEccCCCCCCCCChhhhcCCCCceeec
Q 040495 74 QRVTRLDLRNQSIGGPLSPYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSV 153 (443)
Q Consensus 74 ~~v~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l 153 (443)
.+++.|++++|.+.+.+|..+.++++|++|++++|.+.+.+|..++++++|++|++++|.+++.+|..+.++++|++|++
T Consensus 164 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 243 (968)
T PLN00113 164 SSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDL 243 (968)
T ss_pred CCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEEC
Confidence 57889999999988888888899999999999999988888888888999999999988888888888888888888888
Q ss_pred cCCcccccCCccccCCcCccEeeeeccccCccCCccccCCCCCCEEEccCCcCCccc-ccccCCCCCCEEEcccccCCCC
Q 040495 154 DTNYLVGEIPSAIGSLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRI-DSLVQLRNLRLLDIAFNHFSGM 232 (443)
Q Consensus 154 ~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~-~~l~~l~~L~~L~l~~n~~~~~ 232 (443)
++|.+.+.+|..++++++|++|++++|.+.+.+|..+.++++|++|++++|.+.+.. ..+..+++|+.|++++|.+.+.
T Consensus 244 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~ 323 (968)
T PLN00113 244 VYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGK 323 (968)
T ss_pred cCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCc
Confidence 888888888888888888888888888888778877888888888888887776555 4556667777777777776666
Q ss_pred CCccccCCCCCcEEEcccCcCcccCChhhhcCCCCCcEEeCCCCcCCccC------------------------CccCcC
Q 040495 233 IPPPIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSI------------------------PVSLSN 288 (443)
Q Consensus 233 ~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~------------------------~~~l~~ 288 (443)
+|..+..+++|+.|++++|.+++.+|..+. .+++|+.|++++|++++.+ |..+..
T Consensus 324 ~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~-~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~ 402 (968)
T PLN00113 324 IPVALTSLPRLQVLQLWSNKFSGEIPKNLG-KHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGA 402 (968)
T ss_pred CChhHhcCCCCCEEECcCCCCcCcCChHHh-CCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhC
Confidence 666666666666666666666666665544 4555555555555554444 444445
Q ss_pred CCCCCEEecccCcCccccchhhhCCCCCCEEEccCCCCcccCCCchhh-----------------HhhhcCCCCCCEEEc
Q 040495 289 ASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANELDF-----------------INLLANCSKLERLYF 351 (443)
Q Consensus 289 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-----------------~~~~~~~~~L~~L~l 351 (443)
+++|+.|++++|++++..|..+..+++|+.|++++|.+++..+..... .......++|+.|++
T Consensus 403 ~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~l 482 (968)
T PLN00113 403 CRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDL 482 (968)
T ss_pred CCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccccceEEEC
Confidence 555555555555555555555555556666666665555544321000 000112345677777
Q ss_pred cCCcCcccCChhHhhhccCCCEEeccCCcCeecCchhhhcCCCCCeEeCcCCcCcccCchhhcCCCCCCEEEccCCcCcc
Q 040495 352 NRNRFQGVLPQSMANFSSTIKQIAMGRNRISGTIPPGIRSHANLNWLTMDSNLFTGTIPPVIGELKNLQLLDLGGNFLQG 431 (443)
Q Consensus 352 ~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~ 431 (443)
++|++++.+|..+..+ ++|+.|++++|++++.+|..+..+++|++|++++|.+++.+|..+..+++|+.||+++|+++|
T Consensus 483 s~n~l~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 561 (968)
T PLN00113 483 SRNQFSGAVPRKLGSL-SELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSG 561 (968)
T ss_pred cCCccCCccChhhhhh-hccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccc
Confidence 7777777777777664 678888888888888888888888888888888888888888888888888888888888888
Q ss_pred cCCccccCCCCC
Q 040495 432 SIPSSLGNLTLL 443 (443)
Q Consensus 432 ~~p~~~~~l~~L 443 (443)
.+|..+.+++.|
T Consensus 562 ~~p~~l~~l~~L 573 (968)
T PLN00113 562 EIPKNLGNVESL 573 (968)
T ss_pred cCChhHhcCccc
Confidence 888887776543
|
|
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-37 Score=288.84 Aligned_cols=357 Identities=22% Similarity=0.244 Sum_probs=316.1
Q ss_pred CcEEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCCCCCchhhcCCCccCeEEccCCCCCCCCChhhhcCCCCceeec
Q 040495 74 QRVTRLDLRNQSIGGPLSPYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSV 153 (443)
Q Consensus 74 ~~v~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l 153 (443)
..++.||+++|.+...-+..|.++++|+.+++..|.++ .+|.......+|+.|++.+|.|+..-.+.+..++.|+.||+
T Consensus 78 ~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDL 156 (873)
T KOG4194|consen 78 SQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDL 156 (873)
T ss_pred cceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhh
Confidence 45788999999999888888999999999999999998 89987777788999999999999777888999999999999
Q ss_pred cCCcccccCCccccCCcCccEeeeeccccCccCCccccCCCCCCEEEccCCcCCccc-ccccCCCCCCEEEcccccCCCC
Q 040495 154 DTNYLVGEIPSAIGSLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRI-DSLVQLRNLRLLDIAFNHFSGM 232 (443)
Q Consensus 154 ~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~-~~l~~l~~L~~L~l~~n~~~~~ 232 (443)
+.|.++..--..|..-.++++|+++.|.++..-...|..+.+|..|.++.|.++..+ ..|.++++|+.|++..|.+.-.
T Consensus 157 SrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~iriv 236 (873)
T KOG4194|consen 157 SRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIV 236 (873)
T ss_pred hhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeee
Confidence 999998544456666789999999999999877788999999999999999999988 7788899999999999998744
Q ss_pred CCccccCCCCCcEEEcccCcCcccCChhhhcCCCCCcEEeCCCCcCCccCCccCcCCCCCCEEecccCcCccccchhhhC
Q 040495 233 IPPPIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSR 312 (443)
Q Consensus 233 ~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~ 312 (443)
--..|..+++|+.|.+..|.+. .+.+..|..+.++++|+|..|+++..--.++-++++|+.|+++.|.|....+....-
T Consensus 237 e~ltFqgL~Sl~nlklqrN~I~-kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Wsf 315 (873)
T KOG4194|consen 237 EGLTFQGLPSLQNLKLQRNDIS-KLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSF 315 (873)
T ss_pred hhhhhcCchhhhhhhhhhcCcc-cccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhh
Confidence 4556889999999999999998 777788889999999999999999777778889999999999999999988888889
Q ss_pred CCCCCEEEccCCCCcccCCCchhhHhhhcCCCCCCEEEccCCcCcccCChhHhhhccCCCEEeccCCcCeecCc---hhh
Q 040495 313 LKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNRISGTIP---PGI 389 (443)
Q Consensus 313 l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p---~~l 389 (443)
+++|++|++++|+++...+ ..|..+..|++|+|++|+++ .+.+..+...++|+.|||++|.++..|. ..+
T Consensus 316 tqkL~~LdLs~N~i~~l~~------~sf~~L~~Le~LnLs~Nsi~-~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f 388 (873)
T KOG4194|consen 316 TQKLKELDLSSNRITRLDE------GSFRVLSQLEELNLSHNSID-HLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAF 388 (873)
T ss_pred cccceeEeccccccccCCh------hHHHHHHHhhhhcccccchH-HHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhh
Confidence 9999999999999999888 67888999999999999998 6666666667899999999999998764 456
Q ss_pred hcCCCCCeEeCcCCcCcccCch-hhcCCCCCCEEEccCCcCcccCCccccCC
Q 040495 390 RSHANLNWLTMDSNLFTGTIPP-VIGELKNLQLLDLGGNFLQGSIPSSLGNL 440 (443)
Q Consensus 390 ~~~~~L~~L~L~~n~~~~~~p~-~~~~l~~L~~L~l~~n~l~~~~p~~~~~l 440 (443)
..+++|++|.|.||++. .+|. +|.++..|++|||.+|.+...-|..|..+
T Consensus 389 ~gl~~LrkL~l~gNqlk-~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m 439 (873)
T KOG4194|consen 389 NGLPSLRKLRLTGNQLK-SIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM 439 (873)
T ss_pred ccchhhhheeecCceee-ecchhhhccCcccceecCCCCcceeecccccccc
Confidence 77999999999999998 5554 89999999999999999987777777654
|
|
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-35 Score=272.54 Aligned_cols=358 Identities=19% Similarity=0.199 Sum_probs=301.7
Q ss_pred EEEEEcCCCCCcccccccccC--CCCCCEEeCCCCcCCCCCchhhcCCCccCeEEccCCCCCCCCChhhhcCCCCceeec
Q 040495 76 VTRLDLRNQSIGGPLSPYVGN--LSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSV 153 (443)
Q Consensus 76 v~~L~l~~~~~~~~~~~~~~~--l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l 153 (443)
.+.+|.++..+...--..+.. .+.-+.|++++|.+...-+..|.++++|+.+++..|.++ .+|.......+|+.|++
T Consensus 54 ~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L 132 (873)
T KOG4194|consen 54 TRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDL 132 (873)
T ss_pred ceeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEee
Confidence 345555555544321111111 134577999999999888999999999999999999998 88987777788999999
Q ss_pred cCCcccccCCccccCCcCccEeeeeccccCccCCccccCCCCCCEEEccCCcCCccc-ccccCCCCCCEEEcccccCCCC
Q 040495 154 DTNYLVGEIPSAIGSLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRI-DSLVQLRNLRLLDIAFNHFSGM 232 (443)
Q Consensus 154 ~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~-~~l~~l~~L~~L~l~~n~~~~~ 232 (443)
.+|.++....+.+..++.|+.|+++.|.++..--..+..-.++++|++++|.++... ..|..+.+|..|.+++|.++..
T Consensus 133 ~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittL 212 (873)
T KOG4194|consen 133 RHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTL 212 (873)
T ss_pred eccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCccccc
Confidence 999999777788999999999999999998554456777789999999999999877 8889999999999999999966
Q ss_pred CCccccCCCCCcEEEcccCcCcccCChhhhcCCCCCcEEeCCCCcCCccCCccCcCCCCCCEEecccCcCccccchhhhC
Q 040495 233 IPPPIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSR 312 (443)
Q Consensus 233 ~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~ 312 (443)
.+..|.++++|+.|++..|++. .+....|..+++|+.|.+..|++...-...|..+.++++|++..|+++..-..++.+
T Consensus 213 p~r~Fk~L~~L~~LdLnrN~ir-ive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfg 291 (873)
T KOG4194|consen 213 PQRSFKRLPKLESLDLNRNRIR-IVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFG 291 (873)
T ss_pred CHHHhhhcchhhhhhcccccee-eehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccc
Confidence 6667778999999999999987 555556678999999999999998777888999999999999999999888889999
Q ss_pred CCCCCEEEccCCCCcccCCCchhhHhhhcCCCCCCEEEccCCcCcccCChhHhhhccCCCEEeccCCcCeecCchhhhcC
Q 040495 313 LKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNRISGTIPPGIRSH 392 (443)
Q Consensus 313 l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~~ 392 (443)
++.|+.|++++|.+....+ ....-+++|++|+|+.|+++..-+..+.. ...|+.|+|++|.++-.....|..+
T Consensus 292 Lt~L~~L~lS~NaI~rih~------d~WsftqkL~~LdLs~N~i~~l~~~sf~~-L~~Le~LnLs~Nsi~~l~e~af~~l 364 (873)
T KOG4194|consen 292 LTSLEQLDLSYNAIQRIHI------DSWSFTQKLKELDLSSNRITRLDEGSFRV-LSQLEELNLSHNSIDHLAEGAFVGL 364 (873)
T ss_pred cchhhhhccchhhhheeec------chhhhcccceeEeccccccccCChhHHHH-HHHhhhhcccccchHHHHhhHHHHh
Confidence 9999999999999998888 45667899999999999999444455555 4899999999999996666778899
Q ss_pred CCCCeEeCcCCcCcccCch---hhcCCCCCCEEEccCCcCcccCC-ccccCCCCC
Q 040495 393 ANLNWLTMDSNLFTGTIPP---VIGELKNLQLLDLGGNFLQGSIP-SSLGNLTLL 443 (443)
Q Consensus 393 ~~L~~L~L~~n~~~~~~p~---~~~~l~~L~~L~l~~n~l~~~~p-~~~~~l~~L 443 (443)
++|++|||+.|.+++.+.+ .|..+++|+.|++.+|++. .|| ..|.++..|
T Consensus 365 ssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk-~I~krAfsgl~~L 418 (873)
T KOG4194|consen 365 SSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLK-SIPKRAFSGLEAL 418 (873)
T ss_pred hhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceee-ecchhhhccCccc
Confidence 9999999999999977765 5778999999999999997 666 466666543
|
|
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.98 E-value=5.9e-35 Score=274.94 Aligned_cols=351 Identities=23% Similarity=0.361 Sum_probs=281.3
Q ss_pred CcEEEEEcCCCCCc-ccccccccCCCCCCEEeCCCCcCCCCCchhhcCCCccCeEEccCCCCCCCCChhhhcCCCCceee
Q 040495 74 QRVTRLDLRNQSIG-GPLSPYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELS 152 (443)
Q Consensus 74 ~~v~~L~l~~~~~~-~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~ 152 (443)
.-|+.+|+++|.++ +..|.....++.++.|.|....+. .+|+.++.+.+|++|.+++|++. .+-..++.++.|+.+.
T Consensus 7 pFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRsv~ 84 (1255)
T KOG0444|consen 7 PFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLRSVI 84 (1255)
T ss_pred ceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhHHHh
Confidence 45888999999998 468888889999999999888876 78999999999999999999887 6666788889999999
Q ss_pred ccCCccc-ccCCccccCCcCccEeeeeccccCccCCccccCCCCCCEEEccCCcCCccc-ccccCCCCCCEEEcccccCC
Q 040495 153 VDTNYLV-GEIPSAIGSLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRI-DSLVQLRNLRLLDIAFNHFS 230 (443)
Q Consensus 153 l~~n~l~-~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~-~~l~~l~~L~~L~l~~n~~~ 230 (443)
+..|++. .-+|..+-.+..|..|++++|++. ..|..+..-+++-.|++++|.+...+ +.+.++..|-.||+++|.+.
T Consensus 85 ~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe 163 (1255)
T KOG0444|consen 85 VRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE 163 (1255)
T ss_pred hhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh
Confidence 9888875 347888888999999999999998 78888888889999999999888887 67778888899999999887
Q ss_pred CCCCccccCCCCCcEEEcccCcCcccCChhhhcCCCCCcEEeCCCCcCC-ccCCccCcCCCCCCEEecccCcCccccchh
Q 040495 231 GMIPPPIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFT-GSIPVSLSNASRLEMIEFSRNQFSGRVSVD 309 (443)
Q Consensus 231 ~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~ 309 (443)
.+|+.+..+..|++|.+++|.+...--..+. .+++|++|.+++.+-+ ..+|.++..+.+|..+|++.|.+. ..|+.
T Consensus 164 -~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLP-smtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPec 240 (1255)
T KOG0444|consen 164 -MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLP-SMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPEC 240 (1255)
T ss_pred -hcCHHHHHHhhhhhhhcCCChhhHHHHhcCc-cchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHH
Confidence 6788888888999999998876521111111 4567777888776433 357888888888999999998887 67888
Q ss_pred hhCCCCCCEEEccCCCCcccCCCchhhHhhhcCCCCCCEEEccCCcCcccCChhHhhhccCCCEEeccCCcCeec-Cchh
Q 040495 310 FSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNRISGT-IPPG 388 (443)
Q Consensus 310 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~-~p~~ 388 (443)
+..+++|+.|++++|.++..... .....+|+.|++++|+++ .+|..+..+ +.|+.|.+.+|+++=+ ||..
T Consensus 241 ly~l~~LrrLNLS~N~iteL~~~-------~~~W~~lEtLNlSrNQLt-~LP~avcKL-~kL~kLy~n~NkL~FeGiPSG 311 (1255)
T KOG0444|consen 241 LYKLRNLRRLNLSGNKITELNMT-------EGEWENLETLNLSRNQLT-VLPDAVCKL-TKLTKLYANNNKLTFEGIPSG 311 (1255)
T ss_pred HhhhhhhheeccCcCceeeeecc-------HHHHhhhhhhccccchhc-cchHHHhhh-HHHHHHHhccCcccccCCccc
Confidence 88889999999999988765542 333467888888888888 788888875 7788888888876533 7888
Q ss_pred hhcCCCCCeEeCcCCcCcccCchhhcCCCCCCEEEccCCcCcccCCccccCCC
Q 040495 389 IRSHANLNWLTMDSNLFTGTIPPVIGELKNLQLLDLGGNFLQGSIPSSLGNLT 441 (443)
Q Consensus 389 l~~~~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~ 441 (443)
++.+.+|+.+...+|.+. .+|+.++.+.+|+.|.|++|++- ++|+.+.-|+
T Consensus 312 IGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~ 362 (1255)
T KOG0444|consen 312 IGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLP 362 (1255)
T ss_pred hhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcC
Confidence 888888888888888776 78888888888888888888876 6777665443
|
|
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-34 Score=259.01 Aligned_cols=341 Identities=27% Similarity=0.414 Sum_probs=252.3
Q ss_pred cEEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCCCCCchhhcCCCccCeEEccCCCCCCCCChhhhcCCCCceeecc
Q 040495 75 RVTRLDLRNQSIGGPLSPYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSVD 154 (443)
Q Consensus 75 ~v~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~ 154 (443)
.++.+++++|.+.. .|++++.+..++.++.++|.+. .+|..++.+.+++.++++.|.+. ..|+.++.+..|+.++..
T Consensus 69 ~l~vl~~~~n~l~~-lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~-el~~~i~~~~~l~dl~~~ 145 (565)
T KOG0472|consen 69 CLTVLNVHDNKLSQ-LPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELK-ELPDSIGRLLDLEDLDAT 145 (565)
T ss_pred ceeEEEeccchhhh-CCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcccccee-ecCchHHHHhhhhhhhcc
Confidence 46777777777653 5667777888888888888776 77888888888888888888887 777778888888888888
Q ss_pred CCcccccCCccccCCcCccEeeeeccccCccCCccccCCCCCCEEEccCCcCCcccccccCCCCCCEEEcccccCCCCCC
Q 040495 155 TNYLVGEIPSAIGSLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLRLLDIAFNHFSGMIP 234 (443)
Q Consensus 155 ~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~~~~~~~ 234 (443)
+|+++ ..|+++.++.++..+++.+|++.. .|+..-+++.|+++|...|.+...++.++.+.+|..|++..|++. .+|
T Consensus 146 ~N~i~-slp~~~~~~~~l~~l~~~~n~l~~-l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~-~lP 222 (565)
T KOG0472|consen 146 NNQIS-SLPEDMVNLSKLSKLDLEGNKLKA-LPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIR-FLP 222 (565)
T ss_pred ccccc-cCchHHHHHHHHHHhhccccchhh-CCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcccc-cCC
Confidence 88887 778888888888888888888874 444444488888888888888888888888888888888888886 445
Q ss_pred ccccCCCCCcEEEcccCcCcccCChhhhcCCCCCcEEeCCCCcCCccCCccCcCCCCCCEEecccCcCccccchhhhCCC
Q 040495 235 PPIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLK 314 (443)
Q Consensus 235 ~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~ 314 (443)
.|..++.|+++++..|.+. .+|.+...+++++..|+++.|++. ++|..+..+.+|+.||+++|.+++ .|..++++
T Consensus 223 -ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is~-Lp~sLgnl- 297 (565)
T KOG0472|consen 223 -EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDISS-LPYSLGNL- 297 (565)
T ss_pred -CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCcccc-CCcccccc-
Confidence 6777888888888888776 778777777888888888888887 777777778888888888888874 45557777
Q ss_pred CCCEEEccCCCCcccCC---------------------------------------------------------------
Q 040495 315 NLSFLNMGINNLGTRTA--------------------------------------------------------------- 331 (443)
Q Consensus 315 ~L~~L~l~~n~l~~~~~--------------------------------------------------------------- 331 (443)
+|+.|-+.+|.+...-.
T Consensus 298 hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~V 377 (565)
T KOG0472|consen 298 HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLV 377 (565)
T ss_pred eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccC
Confidence 77777777776521000
Q ss_pred --Cch------------------------------------------h-hHhhhcCCCCCCEEEccCCcCcccCChhHhh
Q 040495 332 --NEL------------------------------------------D-FINLLANCSKLERLYFNRNRFQGVLPQSMAN 366 (443)
Q Consensus 332 --~~~------------------------------------------~-~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~ 366 (443)
..| + .+..++.+++|+.|++++|.+- .+|..++.
T Consensus 378 PdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~ 456 (565)
T KOG0472|consen 378 PDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGS 456 (565)
T ss_pred CHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhh-hcchhhhh
Confidence 000 0 0113455677777777777666 67777776
Q ss_pred hccCCCEEeccCCcCeecCch------------------------hhhcCCCCCeEeCcCCcCcccCchhhcCCCCCCEE
Q 040495 367 FSSTIKQIAMGRNRISGTIPP------------------------GIRSHANLNWLTMDSNLFTGTIPPVIGELKNLQLL 422 (443)
Q Consensus 367 ~~~~L~~L~L~~n~l~~~~p~------------------------~l~~~~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L 422 (443)
+ ..|+.|+++.|+|. .+|. .+.++.+|..|||.+|.+. .+|..++++++|++|
T Consensus 457 l-v~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hL 533 (565)
T KOG0472|consen 457 L-VRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHL 533 (565)
T ss_pred h-hhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEE
Confidence 5 45777777777555 3332 3556777778888777777 777778888888888
Q ss_pred EccCCcCc
Q 040495 423 DLGGNFLQ 430 (443)
Q Consensus 423 ~l~~n~l~ 430 (443)
++++|+|.
T Consensus 534 eL~gNpfr 541 (565)
T KOG0472|consen 534 ELDGNPFR 541 (565)
T ss_pred EecCCccC
Confidence 88888776
|
|
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.8e-33 Score=250.99 Aligned_cols=310 Identities=30% Similarity=0.482 Sum_probs=199.3
Q ss_pred EEEEcCCCCCcccccccccCCCCCCEEeCCCCcCCCCCchhhcCCCccCeEEccCCCCCCCCChhhhc------------
Q 040495 77 TRLDLRNQSIGGPLSPYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSR------------ 144 (443)
Q Consensus 77 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~------------ 144 (443)
+.++.++|.+. .+|+.+..+..++.+++++|.+. .+|+.++.+..++.++..+|+++ ..|+.+.+
T Consensus 94 ~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n 170 (565)
T KOG0472|consen 94 KSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGN 170 (565)
T ss_pred HHhhcccchHh-hccHHHhhhhhhhhhhcccccee-ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhcccc
Confidence 34444555443 24445555555555555555544 44444444444444444444444 33433333
Q ss_pred -----------CCCCceeeccCCcccccCCccccCCcCccEeeeeccccCccCCccccCCCCCCEEEccCCcCCccc-cc
Q 040495 145 -----------RSNLIELSVDTNYLVGEIPSAIGSLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRI-DS 212 (443)
Q Consensus 145 -----------l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~-~~ 212 (443)
++.|++++...|-++ .+|+.++.+.+|+.|++.+|++. ..| .|.++..|+++.++.|.+...+ ..
T Consensus 171 ~l~~l~~~~i~m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~~lpae~ 247 (565)
T KOG0472|consen 171 KLKALPENHIAMKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIEMLPAEH 247 (565)
T ss_pred chhhCCHHHHHHHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHHhhHHHH
Confidence 555666666555554 66666666667777777777666 445 5666677777777777666655 44
Q ss_pred ccCCCCCCEEEcccccCCCCCCccccCCCCCcEEEcccCcCcccCChhhhcCCCCCcEEeCCCCcCCc------------
Q 040495 213 LVQLRNLRLLDIAFNHFSGMIPPPIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTG------------ 280 (443)
Q Consensus 213 l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~------------ 280 (443)
..+++++..||+.+|++. ..|..+.-+.+|+.||+++|.++ .+|..++ ++ +|+.|.+.+|.+..
T Consensus 248 ~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~sLg-nl-hL~~L~leGNPlrTiRr~ii~~gT~~ 323 (565)
T KOG0472|consen 248 LKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPYSLG-NL-HLKFLALEGNPLRTIRREIISKGTQE 323 (565)
T ss_pred hcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccc-cCCcccc-cc-eeeehhhcCCchHHHHHHHHcccHHH
Confidence 457777888888888876 56777777778888888888887 6776666 55 77777777776420
Q ss_pred ----------------------------------------------------cCCccCcCC---CCCCEEecccCcCc--
Q 040495 281 ----------------------------------------------------SIPVSLSNA---SRLEMIEFSRNQFS-- 303 (443)
Q Consensus 281 ----------------------------------------------------~~~~~l~~~---~~L~~L~l~~n~l~-- 303 (443)
.+|...... .-...++++.|++.
T Consensus 324 vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~el 403 (565)
T KOG0472|consen 324 VLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCEL 403 (565)
T ss_pred HHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhh
Confidence 000000000 01334555555542
Q ss_pred ---------------------cccchhhhCCCCCCEEEccCCCCcccCCCchhhHhhhcCCCCCCEEEccCCcCcccCCh
Q 040495 304 ---------------------GRVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQ 362 (443)
Q Consensus 304 ---------------------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~ 362 (443)
+.+|..+..+++|..|++++|-+.+.+. .++.+..|+.|+++.|+|. .+|.
T Consensus 404 Pk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~LP~-------e~~~lv~Lq~LnlS~NrFr-~lP~ 475 (565)
T KOG0472|consen 404 PKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLNDLPE-------EMGSLVRLQTLNLSFNRFR-MLPE 475 (565)
T ss_pred hhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhhhcch-------hhhhhhhhheecccccccc-cchH
Confidence 2455566788999999999887776543 4666777888888888776 4444
Q ss_pred h------------------------HhhhccCCCEEeccCCcCeecCchhhhcCCCCCeEeCcCCcCc
Q 040495 363 S------------------------MANFSSTIKQIAMGRNRISGTIPPGIRSHANLNWLTMDSNLFT 406 (443)
Q Consensus 363 ~------------------------~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~n~~~ 406 (443)
. +.. +.+|+.|||.+|.+. .+|..++++++|+.|+++||+|.
T Consensus 476 ~~y~lq~lEtllas~nqi~~vd~~~l~n-m~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 476 CLYELQTLETLLASNNQIGSVDPSGLKN-MRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred HHhhHHHHHHHHhccccccccChHHhhh-hhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence 3 333 378999999999999 89999999999999999999997
|
|
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.9e-32 Score=256.83 Aligned_cols=331 Identities=24% Similarity=0.397 Sum_probs=287.0
Q ss_pred CCCCCCEEeCCCCcCCC-CCchhhcCCCccCeEEccCCCCCCCCChhhhcCCCCceeeccCCcccccCCccccCCcCccE
Q 040495 96 NLSFLRYINLANNGFLG-EIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSVDTNYLVGEIPSAIGSLFKLER 174 (443)
Q Consensus 96 ~l~~L~~L~L~~n~~~~-~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~ 174 (443)
-++..+-.|+++|.|.| ..|.....+++++.|.+....+. .+|+.++.+.+|++|.+++|++. .+-..+..++.|+.
T Consensus 5 VLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRs 82 (1255)
T KOG0444|consen 5 VLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLRS 82 (1255)
T ss_pred ccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhHH
Confidence 46778889999999994 68999999999999999999998 89999999999999999999988 55566788999999
Q ss_pred eeeeccccC-ccCCccccCCCCCCEEEccCCcCCcccccccCCCCCCEEEcccccCCCCCCc-cccCCCCCcEEEcccCc
Q 040495 175 LFIFHNHIT-GQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLRLLDIAFNHFSGMIPP-PIFNISSLEVISLSENR 252 (443)
Q Consensus 175 L~l~~n~l~-~~~~~~l~~l~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~~~~~~~~-~l~~l~~L~~L~l~~n~ 252 (443)
+.+.+|++. ..+|..+..+..|+.||+++|.+...+..+..-+++..|++++|++. .+|. -+.+++.|-.|++++|+
T Consensus 83 v~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~Nr 161 (1255)
T KOG0444|consen 83 VIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNR 161 (1255)
T ss_pred HhhhccccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccch
Confidence 999999884 46888899999999999999999998888888899999999999998 4554 45688999999999999
Q ss_pred CcccCChhhhcCCCCCcEEeCCCCcCCccCCccCcCCCCCCEEecccCcCc-cccchhhhCCCCCCEEEccCCCCcccCC
Q 040495 253 FTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFS-GRVSVDFSRLKNLSFLNMGINNLGTRTA 331 (443)
Q Consensus 253 l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 331 (443)
+. .+|..+. .+..|++|.|++|.+...-...+..+++|++|.+++.+-+ ..+|.++..+.+|+.+|++.|++...+
T Consensus 162 Le-~LPPQ~R-RL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vP- 238 (1255)
T KOG0444|consen 162 LE-MLPPQIR-RLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVP- 238 (1255)
T ss_pred hh-hcCHHHH-HHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcch-
Confidence 98 8888887 7899999999999875333334455778889999887543 467888999999999999999887644
Q ss_pred CchhhHhhhcCCCCCCEEEccCCcCcccCChhHhhhccCCCEEeccCCcCeecCchhhhcCCCCCeEeCcCCcCc-ccCc
Q 040495 332 NELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNRISGTIPPGIRSHANLNWLTMDSNLFT-GTIP 410 (443)
Q Consensus 332 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~n~~~-~~~p 410 (443)
..+-++++|+.|+|++|+++ ++......+ .++++|++|.|+++ .+|..++.++.|+.|++.+|+++ ..+|
T Consensus 239 ------ecly~l~~LrrLNLS~N~it-eL~~~~~~W-~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiP 309 (1255)
T KOG0444|consen 239 ------ECLYKLRNLRRLNLSGNKIT-ELNMTEGEW-ENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIP 309 (1255)
T ss_pred ------HHHhhhhhhheeccCcCcee-eeeccHHHH-hhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCc
Confidence 45778899999999999999 666666664 78999999999999 89999999999999999999876 4699
Q ss_pred hhhcCCCCCCEEEccCCcCcccCCccccCCCC
Q 040495 411 PVIGELKNLQLLDLGGNFLQGSIPSSLGNLTL 442 (443)
Q Consensus 411 ~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~ 442 (443)
..++.+..|+.+...+|.+. .+|+.++.|..
T Consensus 310 SGIGKL~~Levf~aanN~LE-lVPEglcRC~k 340 (1255)
T KOG0444|consen 310 SGIGKLIQLEVFHAANNKLE-LVPEGLCRCVK 340 (1255)
T ss_pred cchhhhhhhHHHHhhccccc-cCchhhhhhHH
Confidence 99999999999999999886 89999987754
|
|
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-28 Score=242.53 Aligned_cols=335 Identities=26% Similarity=0.367 Sum_probs=230.0
Q ss_pred cEEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCCCCCchhhcCCCccCeEEccCCCCCCCCChhhhcCCCCceeecc
Q 040495 75 RVTRLDLRNQSIGGPLSPYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSVD 154 (443)
Q Consensus 75 ~v~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~ 154 (443)
++++||+++|.+. ..|..+..+.+|+.|+++.|.+. ..|.+.+++.+|+++.|.+|.+. ..|..+..+.+|++|+++
T Consensus 46 ~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS 122 (1081)
T KOG0618|consen 46 KLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLS 122 (1081)
T ss_pred eeEEeeccccccc-cCCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheeccchhh-cCchhHHhhhcccccccc
Confidence 4778888887764 45666677777777777777665 55566666666666666666555 566666666666666666
Q ss_pred CCcccccCCccccCC----------------------------------------cCcc-EeeeeccccCccC-------
Q 040495 155 TNYLVGEIPSAIGSL----------------------------------------FKLE-RLFIFHNHITGQL------- 186 (443)
Q Consensus 155 ~n~l~~~~p~~l~~l----------------------------------------~~L~-~L~l~~n~l~~~~------- 186 (443)
.|.+. .+|..+..+ ..++ .+++++|.+....
T Consensus 123 ~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~~ldLr~N~~~~~dls~~~~l 201 (1081)
T KOG0618|consen 123 FNHFG-PIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTHQLDLRYNEMEVLDLSNLANL 201 (1081)
T ss_pred hhccC-CCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhheeeecccchhhhhhhhhccch
Confidence 66553 222111100 0111 1333333222000
Q ss_pred -----------------C---------------ccccCCCCCCEEEccCCcCCcccccccCCCCCCEEEcccccCCCCCC
Q 040495 187 -----------------P---------------ASIGNLSSLLAFDVRENILWGRIDSLVQLRNLRLLDIAFNHFSGMIP 234 (443)
Q Consensus 187 -----------------~---------------~~l~~l~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~~~~~~~ 234 (443)
| ..-..-.+|++++++.|.+++.+..+..+.+|+.++..+|.++ .+|
T Consensus 202 ~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~-~lp 280 (1081)
T KOG0618|consen 202 EVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLV-ALP 280 (1081)
T ss_pred hhhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeecchhhhhcchHHHHhcccceEecccchhHH-hhH
Confidence 0 0001123577777888877777777788888888888888884 556
Q ss_pred ccccCCCCCcEEEcccCcCcccCChhhhcCCCCCcEEeCCCCcCCccCCccC--------------------------cC
Q 040495 235 PPIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSL--------------------------SN 288 (443)
Q Consensus 235 ~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l--------------------------~~ 288 (443)
..+....+|+.|.+..|.+. .+|.... ....|++|+|..|++. ..|..+ ..
T Consensus 281 ~ri~~~~~L~~l~~~~nel~-yip~~le-~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~ 357 (1081)
T KOG0618|consen 281 LRISRITSLVSLSAAYNELE-YIPPFLE-GLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENN 357 (1081)
T ss_pred HHHhhhhhHHHHHhhhhhhh-hCCCccc-ccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchh
Confidence 66666666666666666665 5555443 4666666666666664 222111 12
Q ss_pred CCCCCEEecccCcCccccchhhhCCCCCCEEEccCCCCcccCCCchhhHhhhcCCCCCCEEEccCCcCcccCChhHhhhc
Q 040495 289 ASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFS 368 (443)
Q Consensus 289 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~ 368 (443)
.+.|+.|.+.+|.+++...+.+.+.++|+.|+|++|.+...+. ..+.+++.|++|++++|+++ .+|..+..+
T Consensus 358 ~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpa------s~~~kle~LeeL~LSGNkL~-~Lp~tva~~- 429 (1081)
T KOG0618|consen 358 HAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPA------SKLRKLEELEELNLSGNKLT-TLPDTVANL- 429 (1081)
T ss_pred hHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCH------HHHhchHHhHHHhcccchhh-hhhHHHHhh-
Confidence 3467788899999998888888999999999999999987776 67889999999999999999 899888885
Q ss_pred cCCCEEeccCCcCeecCchhhhcCCCCCeEeCcCCcCc-ccCchhhcCCCCCCEEEccCCc
Q 040495 369 STIKQIAMGRNRISGTIPPGIRSHANLNWLTMDSNLFT-GTIPPVIGELKNLQLLDLGGNF 428 (443)
Q Consensus 369 ~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~n~~~-~~~p~~~~~l~~L~~L~l~~n~ 428 (443)
+.|+.|...+|++. .+| .+..+++|+.+|++.|+++ +.+|... ..++|++||+++|.
T Consensus 430 ~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~-p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 430 GRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEAL-PSPNLKYLDLSGNT 487 (1081)
T ss_pred hhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhC-CCcccceeeccCCc
Confidence 78999999999998 788 7899999999999999987 3344433 33899999999996
|
|
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.9e-24 Score=230.26 Aligned_cols=287 Identities=18% Similarity=0.187 Sum_probs=168.2
Q ss_pred CccCeEEccCCCCCCCCChhhhcCCCCceeeccCCcccccCCccccCCcCccEeeeeccccCccCCccccCCCCCCEEEc
Q 040495 122 NMLEGLVLSNNSFSGTIPTNLSRRSNLIELSVDTNYLVGEIPSAIGSLFKLERLFIFHNHITGQLPASIGNLSSLLAFDV 201 (443)
Q Consensus 122 ~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l 201 (443)
.+|++|++.+|.+. .+|..+..+++|++++++++.....+|. +..+++|++|++++|.....+|..+.++++|+.|++
T Consensus 611 ~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L 688 (1153)
T PLN03210 611 ENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDM 688 (1153)
T ss_pred cCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeC
Confidence 44444455444444 3444444445555555544433223332 444445555555544433344444445555555555
Q ss_pred cCCcCCcccccccCCCCCCEEEcccccCCCCCCccccCCCCCcEEEcccCcCcccCChhhhcCCCCCcEEeCCCCcC---
Q 040495 202 RENILWGRIDSLVQLRNLRLLDIAFNHFSGMIPPPIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNF--- 278 (443)
Q Consensus 202 ~~n~l~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l--- 278 (443)
++|......+.-..+++|+.|++++|.....+|.. ..+|++|++++|.+. .+|..+ .+++|++|.+.++..
T Consensus 689 ~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~--~l~~L~~L~l~~~~~~~l 762 (1153)
T PLN03210 689 SRCENLEILPTGINLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNL--RLENLDELILCEMKSEKL 762 (1153)
T ss_pred CCCCCcCccCCcCCCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccc--cccccccccccccchhhc
Confidence 44422221211113444555555544333333321 234455555555543 444332 244555555544221
Q ss_pred ----CccCCccCcCCCCCCEEecccCcCccccchhhhCCCCCCEEEccCCCCcccCCCchhhHhhhcCCCCCCEEEccCC
Q 040495 279 ----TGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRN 354 (443)
Q Consensus 279 ----~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n 354 (443)
....+.....+++|+.|++++|...+.+|..++++++|+.|++++|......|. .. ++++|+.|++++|
T Consensus 763 ~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~------~~-~L~sL~~L~Ls~c 835 (1153)
T PLN03210 763 WERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPT------GI-NLESLESLDLSGC 835 (1153)
T ss_pred cccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCC------CC-CccccCEEECCCC
Confidence 101111122346788889988888778888899999999999988754444442 12 6788999999988
Q ss_pred cCcccCChhHhhhccCCCEEeccCCcCeecCchhhhcCCCCCeEeCcCCcCcccCchhhcCCCCCCEEEccCCc
Q 040495 355 RFQGVLPQSMANFSSTIKQIAMGRNRISGTIPPGIRSHANLNWLTMDSNLFTGTIPPVIGELKNLQLLDLGGNF 428 (443)
Q Consensus 355 ~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~ 428 (443)
.....+|.. .++++.|+|++|.++ .+|.++..+++|+.|++++|.-...+|..+..+++|+.+++++|.
T Consensus 836 ~~L~~~p~~----~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 836 SRLRTFPDI----STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred Ccccccccc----ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence 655455542 367899999999998 789999999999999999965555788888888999999998884
|
syringae 6; Provisional |
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.4e-24 Score=229.52 Aligned_cols=346 Identities=18% Similarity=0.192 Sum_probs=268.5
Q ss_pred CcEEEEEcCCCCCcc--cccccccCCCCCCEEeCCCCcC------CCCCchhhcCCC-ccCeEEccCCCCCCCCChhhhc
Q 040495 74 QRVTRLDLRNQSIGG--PLSPYVGNLSFLRYINLANNGF------LGEIPPQIGRLN-MLEGLVLSNNSFSGTIPTNLSR 144 (443)
Q Consensus 74 ~~v~~L~l~~~~~~~--~~~~~~~~l~~L~~L~L~~n~~------~~~~~~~l~~l~-~L~~L~l~~n~~~~~~p~~l~~ 144 (443)
.+|+.+.+.-..+.. ..+..|.++++|+.|.++.+.. ...+|..+..++ +|+.|++.++.+. .+|..+ .
T Consensus 532 ~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~ 609 (1153)
T PLN03210 532 KKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-R 609 (1153)
T ss_pred ceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-C
Confidence 456655554433322 2345688999999999976542 335677777764 6999999999887 778877 5
Q ss_pred CCCCceeeccCCcccccCCccccCCcCccEeeeeccccCccCCccccCCCCCCEEEccCCcC-CcccccccCCCCCCEEE
Q 040495 145 RSNLIELSVDTNYLVGEIPSAIGSLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENIL-WGRIDSLVQLRNLRLLD 223 (443)
Q Consensus 145 l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l-~~~~~~l~~l~~L~~L~ 223 (443)
..+|++|++.++.+. .+|..+..+++|+.++++++.....+| .+..+++|+.|++.+|.. ...+..+..+++|+.|+
T Consensus 610 ~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~ 687 (1153)
T PLN03210 610 PENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLD 687 (1153)
T ss_pred ccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEe
Confidence 689999999999987 788888899999999999886555666 478899999999999854 44447788999999999
Q ss_pred cccccCCCCCCccccCCCCCcEEEcccCcCcccCChhhhcCCCCCcEEeCCCCcCCccCCccCcCCCCCCEEecccCcC-
Q 040495 224 IAFNHFSGMIPPPIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQF- 302 (443)
Q Consensus 224 l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l- 302 (443)
+++|..-..+|..+ ++++|+.|++++|...+.+|. ...+|+.|++++|.+. .+|..+ .+++|++|.+.++..
T Consensus 688 L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~----~~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~ 760 (1153)
T PLN03210 688 MSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPD----ISTNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSE 760 (1153)
T ss_pred CCCCCCcCccCCcC-CCCCCCEEeCCCCCCcccccc----ccCCcCeeecCCCccc-cccccc-cccccccccccccchh
Confidence 99987666777765 789999999999976666664 3568999999999987 677655 578889888877432
Q ss_pred ------ccccchhhhCCCCCCEEEccCCCCcccCCCchhhHhhhcCCCCCCEEEccCCcCcccCChhHhhhccCCCEEec
Q 040495 303 ------SGRVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAM 376 (443)
Q Consensus 303 ------~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~L 376 (443)
....+......++|+.|++++|......| ..+.++++|+.|++++|...+.+|..+ . .++|+.|++
T Consensus 761 ~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP------~si~~L~~L~~L~Ls~C~~L~~LP~~~-~-L~sL~~L~L 832 (1153)
T PLN03210 761 KLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELP------SSIQNLHKLEHLEIENCINLETLPTGI-N-LESLESLDL 832 (1153)
T ss_pred hccccccccchhhhhccccchheeCCCCCCccccC------hhhhCCCCCCEEECCCCCCcCeeCCCC-C-ccccCEEEC
Confidence 11122223445789999999998777777 668899999999999986555888766 3 489999999
Q ss_pred cCCcCeecCchhhhcCCCCCeEeCcCCcCcccCchhhcCCCCCCEEEccCCcCcccCCccccCCCC
Q 040495 377 GRNRISGTIPPGIRSHANLNWLTMDSNLFTGTIPPVIGELKNLQLLDLGGNFLQGSIPSSLGNLTL 442 (443)
Q Consensus 377 ~~n~l~~~~p~~l~~~~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~ 442 (443)
++|.....+|.. .++|+.|+|++|.++ .+|.++..+++|+.|++++|+--..+|..+.+++.
T Consensus 833 s~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~ 894 (1153)
T PLN03210 833 SGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKH 894 (1153)
T ss_pred CCCCcccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccC
Confidence 998765566643 368999999999998 79999999999999999996544467776655543
|
syringae 6; Provisional |
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.2e-27 Score=231.40 Aligned_cols=347 Identities=25% Similarity=0.345 Sum_probs=229.5
Q ss_pred cEEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCCCCCchhhcCCCccCeEEccCCCCCCCCChhhhcCCCCceeecc
Q 040495 75 RVTRLDLRNQSIGGPLSPYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSVD 154 (443)
Q Consensus 75 ~v~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~ 154 (443)
.++.|+++.|.+-...-+.+.+.-+|+.|++++|.+. ..|..+..+.+|+.|.++.|.+. ..|.....+.+|+++.|.
T Consensus 22 ~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~ 99 (1081)
T KOG0618|consen 22 ALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLK 99 (1081)
T ss_pred HHHhhhccccccccCchHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheec
Confidence 4778888887765433344555556999999999876 88888999999999999999998 788889999999999999
Q ss_pred CCcccccCCccccCCcCccEeeeeccccCccCCccccCCCCCCEEEccCC-------------------cCCccc-cccc
Q 040495 155 TNYLVGEIPSAIGSLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVREN-------------------ILWGRI-DSLV 214 (443)
Q Consensus 155 ~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n-------------------~l~~~~-~~l~ 214 (443)
+|.+. ..|..+..+.+|++|+++.|.+. .+|..+..++.+..+..++| .+.+.+ ..+.
T Consensus 100 ~n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~ 177 (1081)
T KOG0618|consen 100 NNRLQ-SLPASISELKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIY 177 (1081)
T ss_pred cchhh-cCchhHHhhhcccccccchhccC-CCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchh
Confidence 99988 89999999999999999999998 66765555555444444444 222222 1112
Q ss_pred CCCCCCEEEcccccCCCCCCcccc-----------------CCCCCcEEEcccCcCcccCChhhhcCCCCCcEEeCCCCc
Q 040495 215 QLRNLRLLDIAFNHFSGMIPPPIF-----------------NISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNN 277 (443)
Q Consensus 215 ~l~~L~~L~l~~n~~~~~~~~~l~-----------------~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~ 277 (443)
.+.. .+++++|.+....-..+. .-++|+.|+.+.|.++...+.. -..+|+.+++++|+
T Consensus 178 ~l~~--~ldLr~N~~~~~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p---~p~nl~~~dis~n~ 252 (1081)
T KOG0618|consen 178 NLTH--QLDLRYNEMEVLDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHP---VPLNLQYLDISHNN 252 (1081)
T ss_pred hhhe--eeecccchhhhhhhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeecccc---ccccceeeecchhh
Confidence 2222 255555544311000000 0122333333333332111100 12344444444444
Q ss_pred CCccCCccCcCCCCCCEEecccCcCcc----------------------ccchhhhCCCCCCEEEccCCCCcccCCCch-
Q 040495 278 FTGSIPVSLSNASRLEMIEFSRNQFSG----------------------RVSVDFSRLKNLSFLNMGINNLGTRTANEL- 334 (443)
Q Consensus 278 l~~~~~~~l~~~~~L~~L~l~~n~l~~----------------------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~- 334 (443)
++ .+|.+++.+.+|+.++..+|.+.. -+|....++++|+.|++..|++....+..+
T Consensus 253 l~-~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~ 331 (1081)
T KOG0618|consen 253 LS-NLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLA 331 (1081)
T ss_pred hh-cchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccccchHHHh
Confidence 44 333444444444444444444321 233334445666666666666544333110
Q ss_pred ------------------------------------------hhHhhhcCCCCCCEEEccCCcCcccCChhHhhhccCCC
Q 040495 335 ------------------------------------------DFINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIK 372 (443)
Q Consensus 335 ------------------------------------------~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~ 372 (443)
.....+.+.++|+.|+|++|++. .+|+....-.+.|+
T Consensus 332 v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~-~fpas~~~kle~Le 410 (1081)
T KOG0618|consen 332 VLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN-SFPASKLRKLEELE 410 (1081)
T ss_pred hhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccc-cCCHHHHhchHHhH
Confidence 01145778899999999999998 78876655558899
Q ss_pred EEeccCCcCeecCchhhhcCCCCCeEeCcCCcCcccCchhhcCCCCCCEEEccCCcCcc-cCCc
Q 040495 373 QIAMGRNRISGTIPPGIRSHANLNWLTMDSNLFTGTIPPVIGELKNLQLLDLGGNFLQG-SIPS 435 (443)
Q Consensus 373 ~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~-~~p~ 435 (443)
.|+||+|+++ .+|..+..+..|++|...+|++. ..| .+.+++.|+.+|+|.|.++. .+|.
T Consensus 411 eL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~ 471 (1081)
T KOG0618|consen 411 ELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPE 471 (1081)
T ss_pred HHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhh
Confidence 9999999999 89999999999999999999998 888 68889999999999999873 4443
|
|
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.8e-23 Score=209.16 Aligned_cols=264 Identities=26% Similarity=0.289 Sum_probs=158.5
Q ss_pred ccCeEEccCCCCCCCCChhhhcCCCCceeeccCCcccccCCccccCCcCccEeeeeccccCccCCccccCCCCCCEEEcc
Q 040495 123 MLEGLVLSNNSFSGTIPTNLSRRSNLIELSVDTNYLVGEIPSAIGSLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVR 202 (443)
Q Consensus 123 ~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 202 (443)
.-..|+++++.++ .+|+.+. ++|+.|++.+|+++ .+|.. .++|++|++++|+++ .+|.. .++|+.|++.
T Consensus 202 ~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt-~LP~l---p~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~Ls 270 (788)
T PRK15387 202 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPAL---PPELRTLEVSGNQLT-SLPVL---PPGLLELSIF 270 (788)
T ss_pred CCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCC-CCCCC---CCCCcEEEecCCccC-cccCc---ccccceeecc
Confidence 3556677777666 5666554 36677777777666 45532 356777777777666 34432 3466667777
Q ss_pred CCcCCcccccccCCCCCCEEEcccccCCCCCCccccCCCCCcEEEcccCcCcccCChhhhcCCCCCcEEeCCCCcCCccC
Q 040495 203 ENILWGRIDSLVQLRNLRLLDIAFNHFSGMIPPPIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSI 282 (443)
Q Consensus 203 ~n~l~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~ 282 (443)
+|.+...+.. ..+|+.|++++|++. .+|. ..++|+.|++++|.++ .+|. ....|+.|++++|+++ .+
T Consensus 271 ~N~L~~Lp~l---p~~L~~L~Ls~N~Lt-~LP~---~p~~L~~LdLS~N~L~-~Lp~----lp~~L~~L~Ls~N~L~-~L 337 (788)
T PRK15387 271 SNPLTHLPAL---PSGLCKLWIFGNQLT-SLPV---LPPGLQELSVSDNQLA-SLPA----LPSELCKLWAYNNQLT-SL 337 (788)
T ss_pred CCchhhhhhc---hhhcCEEECcCCccc-cccc---cccccceeECCCCccc-cCCC----CcccccccccccCccc-cc
Confidence 6666543321 245666777777665 2333 2356777777777766 4443 1235666777777766 34
Q ss_pred CccCcCCCCCCEEecccCcCccccchhhhCCCCCCEEEccCCCCcccCCCchhhHhhhcCCCCCCEEEccCCcCcccCCh
Q 040495 283 PVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQ 362 (443)
Q Consensus 283 ~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~ 362 (443)
|.. ..+|+.|++++|++++ +|.. .++|+.|++++|.++.... ...+|+.|++++|+++ .+|.
T Consensus 338 P~l---p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~LP~----------l~~~L~~LdLs~N~Lt-~LP~ 399 (788)
T PRK15387 338 PTL---PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTSLPA----------LPSGLKELIVSGNRLT-SLPV 399 (788)
T ss_pred ccc---ccccceEecCCCccCC-CCCC---CcccceehhhccccccCcc----------cccccceEEecCCccc-CCCC
Confidence 431 2466777777777764 3331 2456666777776664321 1245677777777776 4553
Q ss_pred hHhhhccCCCEEeccCCcCeecCchhhhcCCCCCeEeCcCCcCcccCchhhcCCCCCCEEEccCCcCcccCCccc
Q 040495 363 SMANFSSTIKQIAMGRNRISGTIPPGIRSHANLNWLTMDSNLFTGTIPPVIGELKNLQLLDLGGNFLQGSIPSSL 437 (443)
Q Consensus 363 ~~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~ 437 (443)
. .++|+.|++++|+++ .+|... .+|+.|++++|+++ .+|+.+.++++|+.|++++|+++|.+|..+
T Consensus 400 l----~s~L~~LdLS~N~Ls-sIP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 400 L----PSELKELMVSGNRLT-SLPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred c----ccCCCEEEccCCcCC-CCCcch---hhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence 2 246777777777776 355432 34666777777776 677777777777777777777777666655
|
|
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1e-22 Score=206.04 Aligned_cols=264 Identities=23% Similarity=0.286 Sum_probs=212.7
Q ss_pred CCCEEeCCCCcCCCCCchhhcCCCccCeEEccCCCCCCCCChhhhcCCCCceeeccCCcccccCCccccCCcCccEeeee
Q 040495 99 FLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSVDTNYLVGEIPSAIGSLFKLERLFIF 178 (443)
Q Consensus 99 ~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~ 178 (443)
.-..|+++++.++ .+|..+. ++|+.|++.+|.++ .+|. .+++|++|++++|+++ .+|.. .++|+.|+++
T Consensus 202 ~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt-~LP~---lp~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~Ls 270 (788)
T PRK15387 202 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPVL---PPGLLELSIF 270 (788)
T ss_pred CCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCC-CCCC---CCCCCcEEEecCCccC-cccCc---ccccceeecc
Confidence 4678999999998 7888775 47999999999998 5665 3588999999999998 56643 4689999999
Q ss_pred ccccCccCCccccCCCCCCEEEccCCcCCcccccccCCCCCCEEEcccccCCCCCCccccCCCCCcEEEcccCcCcccCC
Q 040495 179 HNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLRLLDIAFNHFSGMIPPPIFNISSLEVISLSENRFTGSLP 258 (443)
Q Consensus 179 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~ 258 (443)
+|.++ .+|.. ..+|+.|++++|.+...+. ..++|+.|++++|++.+ +|.. ..+|+.|++++|.++ .+|
T Consensus 271 ~N~L~-~Lp~l---p~~L~~L~Ls~N~Lt~LP~---~p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~-~LP 338 (788)
T PRK15387 271 SNPLT-HLPAL---PSGLCKLWIFGNQLTSLPV---LPPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLT-SLP 338 (788)
T ss_pred CCchh-hhhhc---hhhcCEEECcCCccccccc---cccccceeECCCCcccc-CCCC---cccccccccccCccc-ccc
Confidence 99987 45543 3578899999998886553 24789999999999985 4442 246888999999998 677
Q ss_pred hhhhcCCCCCcEEeCCCCcCCccCCccCcCCCCCCEEecccCcCccccchhhhCCCCCCEEEccCCCCcccCCCchhhHh
Q 040495 259 VDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANELDFIN 338 (443)
Q Consensus 259 ~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~ 338 (443)
. ...+|++|++++|+++ .+|.. .++|+.|++++|++++ +|.. ..+|+.|++++|.++..+.
T Consensus 339 ~----lp~~Lq~LdLS~N~Ls-~LP~l---p~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt~LP~------- 399 (788)
T PRK15387 339 T----LPSGLQELSVSDNQLA-SLPTL---PSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLTSLPV------- 399 (788)
T ss_pred c----cccccceEecCCCccC-CCCCC---Ccccceehhhcccccc-Cccc---ccccceEEecCCcccCCCC-------
Confidence 4 2358999999999998 45653 3578899999999985 5542 3579999999999986443
Q ss_pred hhcCCCCCCEEEccCCcCcccCChhHhhhccCCCEEeccCCcCeecCchhhhcCCCCCeEeCcCCcCcccCchhh
Q 040495 339 LLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNRISGTIPPGIRSHANLNWLTMDSNLFTGTIPPVI 413 (443)
Q Consensus 339 ~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~n~~~~~~p~~~ 413 (443)
..++|+.|++++|+++ .+|.. +.+|+.|++++|+++ .+|..+..+++|+.|+|++|++++..|..+
T Consensus 400 ---l~s~L~~LdLS~N~Ls-sIP~l----~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 400 ---LPSELKELMVSGNRLT-SLPML----PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred ---cccCCCEEEccCCcCC-CCCcc----hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence 1368999999999998 57753 256889999999999 799999999999999999999999988876
|
|
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.8e-21 Score=198.21 Aligned_cols=339 Identities=18% Similarity=0.281 Sum_probs=204.4
Q ss_pred ccCCCCHHHHHHHHHHHHhCCCCCCCC----CCCCCCCCCCCccc----------------eeeCCCCCcEEEEEcCCCC
Q 040495 26 ICANSNETDRLALLAIKLQLHDPLGVT----SSWNNSMSLCQWTG----------------VTCGRRHQRVTRLDLRNQS 85 (443)
Q Consensus 26 ~~~~~~~~~~~~l~~~~~~~~~~~~~~----~~w~~~~~~c~w~g----------------v~c~~~~~~v~~L~l~~~~ 85 (443)
.+....+.+...+.+....+..|. +. ..|+...+.|.-.. |.|.. +.|+.+..-+..
T Consensus 56 ~~~~~~~~~~~~~~~~~~~l~~p~-~~~~~~~~~~~~~~fc~~~~~~~~~l~~~~~~~~~tv~~~~--~~vt~l~~~g~~ 132 (754)
T PRK15370 56 PPETASPEEIKSKFECLRMLAFPA-YADNIQYSRGGADQYCILSENSQEILSIVFNTEGYTVEGGG--KSVTYTRVTESE 132 (754)
T ss_pred CCCCCCHHHHHHHHHHHHHhcCCc-hhhccccccCCCCcccccCCcchhhheeeecCCceEEecCC--Cccccccccccc
Confidence 345677888999999999998774 33 34888888886433 44543 455555554422
Q ss_pred Cccccc--ccccCCCCCCEEeCCCCcCCCCC---chhh-----cCCCccCeEEccCCCCCCCCChhhhcCCCCceeeccC
Q 040495 86 IGGPLS--PYVGNLSFLRYINLANNGFLGEI---PPQI-----GRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSVDT 155 (443)
Q Consensus 86 ~~~~~~--~~~~~l~~L~~L~L~~n~~~~~~---~~~l-----~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~ 155 (443)
...... ....+..... =+-..+...+.- ..++ +-..+...|+++++.++ .+|..+. +.|+.|++++
T Consensus 133 ~~~~~~~~~~~~~~~~~w-~~w~~~~~~~~~~~r~~a~~r~~~Cl~~~~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~ 208 (754)
T PRK15370 133 QASSASGSKDAVNYELIW-SEWVKEAPAKEAANREEAVQRMRDCLKNNKTELRLKILGLT-TIPACIP--EQITTLILDN 208 (754)
T ss_pred ccccCCCCCChhhHHHHH-HHHHhcCCCCccccHHHHHHHHHhhcccCceEEEeCCCCcC-cCCcccc--cCCcEEEecC
Confidence 111100 0000000000 000000000000 0001 11134566777777766 4565443 4677777777
Q ss_pred CcccccCCccccCCcCccEeeeeccccCccCCccccCCCCCCEEEccCCcCCcccccccCCCCCCEEEcccccCCCCCCc
Q 040495 156 NYLVGEIPSAIGSLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLRLLDIAFNHFSGMIPP 235 (443)
Q Consensus 156 n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~~~~~~~~ 235 (443)
|.++ .+|..+. .+|++|++++|.++ .+|..+. .+|+.|++++|.+...+..+. .+|+.|++++|.+. .+|.
T Consensus 209 N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~N~L~-~LP~ 279 (754)
T PRK15370 209 NELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRITELPERLP--SALQSLDLFHNKIS-CLPE 279 (754)
T ss_pred CCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECcCCccCcCChhHh--CCCCEEECcCCccC-cccc
Confidence 7776 5565443 46777777777776 4555443 367777777777665443332 46778888887777 4565
Q ss_pred cccCCCCCcEEEcccCcCcccCChhhhcCCCCCcEEeCCCCcCCccCCccCcCCCCCCEEecccCcCccccchhhhCCCC
Q 040495 236 PIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKN 315 (443)
Q Consensus 236 ~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~ 315 (443)
.+. ++|+.|++++|+++ .+|..+. ++|+.|++++|.++ .+|..+ .++|+.|++++|.+++ +|..+. ++
T Consensus 280 ~l~--~sL~~L~Ls~N~Lt-~LP~~lp---~sL~~L~Ls~N~Lt-~LP~~l--~~sL~~L~Ls~N~Lt~-LP~~l~--~s 347 (754)
T PRK15370 280 NLP--EELRYLSVYDNSIR-TLPAHLP---SGITHLNVQSNSLT-ALPETL--PPGLKTLEAGENALTS-LPASLP--PE 347 (754)
T ss_pred ccC--CCCcEEECCCCccc-cCcccch---hhHHHHHhcCCccc-cCCccc--cccceeccccCCcccc-CChhhc--Cc
Confidence 443 47888888888877 5664432 46778888888877 345433 2578888888888775 454442 67
Q ss_pred CCEEEccCCCCcccCCCchhhHhhhcCCCCCCEEEccCCcCcccCChhHhhhccCCCEEeccCCcCeecCchhh----hc
Q 040495 316 LSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNRISGTIPPGI----RS 391 (443)
Q Consensus 316 L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l----~~ 391 (443)
|+.|++++|+++..+. .+ .++|++|++++|+++ .+|..+. ..|+.|++++|+++ .+|..+ ..
T Consensus 348 L~~L~Ls~N~L~~LP~-------~l--p~~L~~LdLs~N~Lt-~LP~~l~---~sL~~LdLs~N~L~-~LP~sl~~~~~~ 413 (754)
T PRK15370 348 LQVLDVSKNQITVLPE-------TL--PPTITTLDVSRNALT-NLPENLP---AALQIMQASRNNLV-RLPESLPHFRGE 413 (754)
T ss_pred ccEEECCCCCCCcCCh-------hh--cCCcCEEECCCCcCC-CCCHhHH---HHHHHHhhccCCcc-cCchhHHHHhhc
Confidence 8888888888774322 12 257888888888888 6776653 35888888888887 555443 34
Q ss_pred CCCCCeEeCcCCcCc
Q 040495 392 HANLNWLTMDSNLFT 406 (443)
Q Consensus 392 ~~~L~~L~L~~n~~~ 406 (443)
.+++..+++.+|+++
T Consensus 414 ~~~l~~L~L~~Npls 428 (754)
T PRK15370 414 GPQPTRIIVEYNPFS 428 (754)
T ss_pred CCCccEEEeeCCCcc
Confidence 577788888888886
|
|
| >KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.86 E-value=8.9e-24 Score=189.84 Aligned_cols=252 Identities=19% Similarity=0.195 Sum_probs=165.4
Q ss_pred CcEEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCCCCCchhhcCCCccCeEEccC-CCCCCCCChhhhcCCCCceee
Q 040495 74 QRVTRLDLRNQSIGGPLSPYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSN-NSFSGTIPTNLSRRSNLIELS 152 (443)
Q Consensus 74 ~~v~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~-n~~~~~~p~~l~~l~~L~~L~ 152 (443)
...+.|+|..|+++...+.+|..++.||.|||++|.|+..-|++|..+++|..|-+.+ |+|+...-..|.+|..|+.|.
T Consensus 67 ~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLl 146 (498)
T KOG4237|consen 67 PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLL 146 (498)
T ss_pred CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHh
Confidence 4678899999999887788899999999999999999888899999998887776554 888855556788899999999
Q ss_pred ccCCcccccCCccccCCcCccEeeeeccccCccCCc-cccCCCCCCEEEccCCcCCccc-------------ccccCCCC
Q 040495 153 VDTNYLVGEIPSAIGSLFKLERLFIFHNHITGQLPA-SIGNLSSLLAFDVRENILWGRI-------------DSLVQLRN 218 (443)
Q Consensus 153 l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~-~l~~l~~L~~L~l~~n~l~~~~-------------~~l~~l~~ 218 (443)
+.-|++.-...+.|..++++..|.+.+|.+. .++. .+..+..++.+.+..|.+...- ..++....
T Consensus 147 lNan~i~Cir~~al~dL~~l~lLslyDn~~q-~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc 225 (498)
T KOG4237|consen 147 LNANHINCIRQDALRDLPSLSLLSLYDNKIQ-SICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARC 225 (498)
T ss_pred cChhhhcchhHHHHHHhhhcchhcccchhhh-hhccccccchhccchHhhhcCccccccccchhhhHHhhchhhccccee
Confidence 8888888666777888899999999998887 3443 6777777887777666421100 01111111
Q ss_pred CCEEEcccccC-------------------------CCCCC-ccccCCCCCcEEEcccCcCcccCChhhhcCCCCCcEEe
Q 040495 219 LRLLDIAFNHF-------------------------SGMIP-PPIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLS 272 (443)
Q Consensus 219 L~~L~l~~n~~-------------------------~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ 272 (443)
..-..+.+..+ .+.-| ..|..+++|++|++++|.++ .+....|.....+++|.
T Consensus 226 ~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~-~i~~~aFe~~a~l~eL~ 304 (498)
T KOG4237|consen 226 VSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKIT-RIEDGAFEGAAELQELY 304 (498)
T ss_pred cchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccc-hhhhhhhcchhhhhhhh
Confidence 11111111111 11111 23455666666666666665 44444555566666666
Q ss_pred CCCCcCCccCCccCcCCCCCCEEecccCcCccccchhhhCCCCCCEEEccCCCCc
Q 040495 273 PNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLG 327 (443)
Q Consensus 273 L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 327 (443)
|..|++...-...|.++..|+.|++.+|+|+...|..|..+..|.+|++-.|.+.
T Consensus 305 L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~ 359 (498)
T KOG4237|consen 305 LTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFN 359 (498)
T ss_pred cCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCccc
Confidence 6666665444445566666666666666666666666666666666666655543
|
|
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.5e-20 Score=189.98 Aligned_cols=246 Identities=23% Similarity=0.364 Sum_probs=147.9
Q ss_pred CCceeeccCCcccccCCccccCCcCccEeeeeccccCccCCccccCCCCCCEEEccCCcCCcccccccCCCCCCEEEccc
Q 040495 147 NLIELSVDTNYLVGEIPSAIGSLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLRLLDIAF 226 (443)
Q Consensus 147 ~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~ 226 (443)
+...|+++++.++ .+|..+. +.|+.|++++|.++ .+|..+. ++|+.|++++|.+...+..+. ++|+.|++++
T Consensus 179 ~~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~ 250 (754)
T PRK15370 179 NKTELRLKILGLT-TIPACIP--EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLTSIPATLP--DTIQEMELSI 250 (754)
T ss_pred CceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccccCChhhh--ccccEEECcC
Confidence 4566777766666 4555442 45777777777776 4555443 467777777776665443222 3577777777
Q ss_pred ccCCCCCCccccCCCCCcEEEcccCcCcccCChhhhcCCCCCcEEeCCCCcCCccCCccCcCCCCCCEEecccCcCcccc
Q 040495 227 NHFSGMIPPPIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRV 306 (443)
Q Consensus 227 n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~ 306 (443)
|.+. .+|..+. ++|+.|++++|.++ .+|..+. ++|+.|++++|+++ .+|..+. ++|+.|++++|+++. +
T Consensus 251 N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~---~sL~~L~Ls~N~Lt-~LP~~lp--~sL~~L~Ls~N~Lt~-L 319 (754)
T PRK15370 251 NRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP---EELRYLSVYDNSIR-TLPAHLP--SGITHLNVQSNSLTA-L 319 (754)
T ss_pred CccC-cCChhHh--CCCCEEECcCCccC-ccccccC---CCCcEEECCCCccc-cCcccch--hhHHHHHhcCCcccc-C
Confidence 7766 4555443 36777777777776 5665432 46777777777766 3444332 356677777777664 3
Q ss_pred chhhhCCCCCCEEEccCCCCcccCCCchhhHhhhcCCCCCCEEEccCCcCcccCChhHhhhccCCCEEeccCCcCeecCc
Q 040495 307 SVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNRISGTIP 386 (443)
Q Consensus 307 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p 386 (443)
|..+ .++|+.|++++|.++.... .+ .++|+.|++++|+++ .+|..+ +++|+.|++++|+++ .+|
T Consensus 320 P~~l--~~sL~~L~Ls~N~Lt~LP~-------~l--~~sL~~L~Ls~N~L~-~LP~~l---p~~L~~LdLs~N~Lt-~LP 383 (754)
T PRK15370 320 PETL--PPGLKTLEAGENALTSLPA-------SL--PPELQVLDVSKNQIT-VLPETL---PPTITTLDVSRNALT-NLP 383 (754)
T ss_pred Cccc--cccceeccccCCccccCCh-------hh--cCcccEEECCCCCCC-cCChhh---cCCcCEEECCCCcCC-CCC
Confidence 3322 2567777777777665322 12 256777777777776 566544 256777777777776 456
Q ss_pred hhhhcCCCCCeEeCcCCcCcccCchhh----cCCCCCCEEEccCCcCc
Q 040495 387 PGIRSHANLNWLTMDSNLFTGTIPPVI----GELKNLQLLDLGGNFLQ 430 (443)
Q Consensus 387 ~~l~~~~~L~~L~L~~n~~~~~~p~~~----~~l~~L~~L~l~~n~l~ 430 (443)
..+. ..|+.|++++|++. .+|+.+ ..++.+..|++.+|+++
T Consensus 384 ~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 384 ENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred HhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 5544 25667777777766 444433 33466677777777664
|
|
| >KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.4e-23 Score=184.86 Aligned_cols=333 Identities=24% Similarity=0.265 Sum_probs=247.9
Q ss_pred CCCEEeCCCCcCCCCCchhhcCCCccCeEEccCCCCCCCCChhhhcCCCCceeeccC-CcccccCCccccCCcCccEeee
Q 040495 99 FLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSVDT-NYLVGEIPSAIGSLFKLERLFI 177 (443)
Q Consensus 99 ~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~-n~l~~~~p~~l~~l~~L~~L~l 177 (443)
.-..++|..|.|+...+.+|+.+++|+.|||++|.|+.+-|+.|.++++|.+|-+.+ |+++......|+++..++.|.+
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll 147 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL 147 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence 567889999999977788899999999999999999999999999999998887766 8888555567899999999999
Q ss_pred eccccCccCCccccCCCCCCEEEccCCcCCccc-ccccCCCCCCEEEcccccCCC------------CCCccccCCC---
Q 040495 178 FHNHITGQLPASIGNLSSLLAFDVRENILWGRI-DSLVQLRNLRLLDIAFNHFSG------------MIPPPIFNIS--- 241 (443)
Q Consensus 178 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~-~~l~~l~~L~~L~l~~n~~~~------------~~~~~l~~l~--- 241 (443)
.-|++.-...+.+..++++..|.+..|.+.... ..+..+..++.+++..|.+.. ..|..++...
T Consensus 148 Nan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~ 227 (498)
T KOG4237|consen 148 NANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVS 227 (498)
T ss_pred ChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecc
Confidence 999998777788999999999999999888777 688888899999998887321 1111111111
Q ss_pred -------------------CCcEE---EcccCcCcccCChhhhcCCCCCcEEeCCCCcCCccCCccCcCCCCCCEEeccc
Q 040495 242 -------------------SLEVI---SLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSR 299 (443)
Q Consensus 242 -------------------~L~~L---~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~ 299 (443)
.++.+ ..+.+...+..|..-+..+++|+.+++++|++++.-+.+|....++++|.+..
T Consensus 228 p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~ 307 (498)
T KOG4237|consen 228 PYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTR 307 (498)
T ss_pred hHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCc
Confidence 11111 11222233456666677899999999999999988899999999999999999
Q ss_pred CcCccccchhhhCCCCCCEEEccCCCCcccCCCchhhHhhhcCCCCCCEEEccCCcCcc-cCChhHhhh-----------
Q 040495 300 NQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQG-VLPQSMANF----------- 367 (443)
Q Consensus 300 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~-~~p~~~~~~----------- 367 (443)
|++.......|.++..|+.|++.+|+|+...| .+|....+|.+|.+-.|++-= ---.|+..+
T Consensus 308 N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~------~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~~~~~~~ 381 (498)
T KOG4237|consen 308 NKLEFVSSGMFQGLSGLKTLSLYDNQITTVAP------GAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKSVVGNPR 381 (498)
T ss_pred chHHHHHHHhhhccccceeeeecCCeeEEEec------ccccccceeeeeehccCcccCccchHHHHHHHhhCCCCCCCC
Confidence 99997777889999999999999999999888 678889999999998886531 001111111
Q ss_pred ---ccCCCEEeccCCcCeec---Cchhh------------------hcC-------------CCCCeEeCcCCcCcccCc
Q 040495 368 ---SSTIKQIAMGRNRISGT---IPPGI------------------RSH-------------ANLNWLTMDSNLFTGTIP 410 (443)
Q Consensus 368 ---~~~L~~L~L~~n~l~~~---~p~~l------------------~~~-------------~~L~~L~L~~n~~~~~~p 410 (443)
+..++.+++++..+... .|+.. ..+ ..-..+++.+|.++ .+|
T Consensus 382 Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvRcSnk~lk~lp~~iP~d~telyl~gn~~~-~vp 460 (498)
T KOG4237|consen 382 CQSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDTVVRCSNKLLKLLPRGIPVDVTELYLDGNAIT-SVP 460 (498)
T ss_pred CCCCchhccccchhccccccccCCccccCCCCCCCCCCCcchhhhhHhhcccchhhcCCCCCchhHHHhcccchhc-ccC
Confidence 23455555555433211 11111 011 12357888999998 788
Q ss_pred hhhcCCCCCCEEEccCCcCcccCCccccCCC
Q 040495 411 PVIGELKNLQLLDLGGNFLQGSIPSSLGNLT 441 (443)
Q Consensus 411 ~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~ 441 (443)
.. .+.+| .+|+++|+++-.--..|.+++
T Consensus 461 ~~--~~~~l-~~dls~n~i~~Lsn~tf~n~t 488 (498)
T KOG4237|consen 461 DE--LLRSL-LLDLSNNRISSLSNYTFSNMT 488 (498)
T ss_pred HH--HHhhh-hcccccCceehhhcccccchh
Confidence 76 55677 899999998743333444444
|
|
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.6e-21 Score=181.80 Aligned_cols=284 Identities=19% Similarity=0.229 Sum_probs=175.9
Q ss_pred eEEccCCCCC-CCCChhhhcCCCCceeeccCCccccc----CCccccCCcCccEeeeeccccCccCCccccCCCCCCEEE
Q 040495 126 GLVLSNNSFS-GTIPTNLSRRSNLIELSVDTNYLVGE----IPSAIGSLFKLERLFIFHNHITGQLPASIGNLSSLLAFD 200 (443)
Q Consensus 126 ~L~l~~n~~~-~~~p~~l~~l~~L~~L~l~~n~l~~~----~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 200 (443)
.|+|.++.++ ...+..+..+.+|++++++++.++.. ++..+...+.+++++++++.+.+ .+..+.
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~-~~~~~~--------- 71 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGR-IPRGLQ--------- 71 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCC-cchHHH---------
Confidence 4667777776 33455566677788888888777432 34445556667777777665542 111000
Q ss_pred ccCCcCCcccccccCCCCCCEEEcccccCCCCCCccccCCC---CCcEEEcccCcCccc----CChhhhcCC-CCCcEEe
Q 040495 201 VRENILWGRIDSLVQLRNLRLLDIAFNHFSGMIPPPIFNIS---SLEVISLSENRFTGS----LPVDAGVNL-PNLRQLS 272 (443)
Q Consensus 201 l~~n~l~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~---~L~~L~l~~n~l~~~----~~~~~~~~~-~~L~~L~ 272 (443)
.....+..+++|++|++++|.+.+..+..+..+. +|++|++++|.+++. +...+. .+ ++|++|+
T Consensus 72 -------~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~-~~~~~L~~L~ 143 (319)
T cd00116 72 -------SLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLK-DLPPALEKLV 143 (319)
T ss_pred -------HHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHH-hCCCCceEEE
Confidence 0002233345555555555555433333333333 366666666665521 111222 34 6777777
Q ss_pred CCCCcCCcc----CCccCcCCCCCCEEecccCcCccc----cchhhhCCCCCCEEEccCCCCcccCCCchhhHhhhcCCC
Q 040495 273 PNGNNFTGS----IPVSLSNASRLEMIEFSRNQFSGR----VSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCS 344 (443)
Q Consensus 273 L~~n~l~~~----~~~~l~~~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~ 344 (443)
+++|.+++. ++..+..+++|++|++++|.+++. ++..+..+++|+.|++++|.+++.... .+...+..++
T Consensus 144 L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~--~l~~~~~~~~ 221 (319)
T cd00116 144 LGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGAS--ALAETLASLK 221 (319)
T ss_pred cCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHH--HHHHHhcccC
Confidence 777777632 334456667788888888887743 233455667888888888887654332 1224567788
Q ss_pred CCCEEEccCCcCcccCChhHhhhc----cCCCEEeccCCcCee----cCchhhhcCCCCCeEeCcCCcCccc----Cchh
Q 040495 345 KLERLYFNRNRFQGVLPQSMANFS----STIKQIAMGRNRISG----TIPPGIRSHANLNWLTMDSNLFTGT----IPPV 412 (443)
Q Consensus 345 ~L~~L~l~~n~l~~~~p~~~~~~~----~~L~~L~L~~n~l~~----~~p~~l~~~~~L~~L~L~~n~~~~~----~p~~ 412 (443)
+|++|++++|++++.....+.... +.|+.|++++|.+++ .+...+..+++|+++++++|.++.. +...
T Consensus 222 ~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~ 301 (319)
T cd00116 222 SLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAES 301 (319)
T ss_pred CCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHH
Confidence 899999999988864444443322 689999999998873 2445666778899999999999844 4444
Q ss_pred hcCC-CCCCEEEccCCcC
Q 040495 413 IGEL-KNLQLLDLGGNFL 429 (443)
Q Consensus 413 ~~~l-~~L~~L~l~~n~l 429 (443)
+... +.|+++++.+|++
T Consensus 302 ~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 302 LLEPGNELESLWVKDDSF 319 (319)
T ss_pred HhhcCCchhhcccCCCCC
Confidence 4444 7889999988864
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=99.80 E-value=8.8e-21 Score=179.17 Aligned_cols=57 Identities=21% Similarity=0.248 Sum_probs=31.7
Q ss_pred EEcCCCCCc-ccccccccCCCCCCEEeCCCCcCCCC----CchhhcCCCccCeEEccCCCCC
Q 040495 79 LDLRNQSIG-GPLSPYVGNLSFLRYINLANNGFLGE----IPPQIGRLNMLEGLVLSNNSFS 135 (443)
Q Consensus 79 L~l~~~~~~-~~~~~~~~~l~~L~~L~L~~n~~~~~----~~~~l~~l~~L~~L~l~~n~~~ 135 (443)
|+|..+.+. +.+...+..++.|++|+++++.++.. ++..+...+.+++++++++.+.
T Consensus 3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~ 64 (319)
T cd00116 3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETG 64 (319)
T ss_pred cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccC
Confidence 555555555 23444455556677777776666432 3444455555666666665554
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.8e-19 Score=144.50 Aligned_cols=159 Identities=32% Similarity=0.532 Sum_probs=84.1
Q ss_pred ccCeEEccCCCCCCCCChhhhcCCCCceeeccCCcccccCCccccCCcCccEeeeeccccCccCCccccCCCCCCEEEcc
Q 040495 123 MLEGLVLSNNSFSGTIPTNLSRRSNLIELSVDTNYLVGEIPSAIGSLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVR 202 (443)
Q Consensus 123 ~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 202 (443)
.++.|.+++|.++ .+|+.+..+.+|+.|++.+|+++ .+|.+++.+++|+.|+++-|++. ..|+.|+.++.|+.||+.
T Consensus 34 ~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldlt 110 (264)
T KOG0617|consen 34 NITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLT 110 (264)
T ss_pred hhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhcc
Confidence 3334444444444 33444444444444444444444 44444444555555555544444 445555554444444444
Q ss_pred CCcCCccc--ccccCCCCCCEEEcccccCCCCCCccccCCCCCcEEEcccCcCcccCChhhhcCCCCCcEEeCCCCcCCc
Q 040495 203 ENILWGRI--DSLVQLRNLRLLDIAFNHFSGMIPPPIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTG 280 (443)
Q Consensus 203 ~n~l~~~~--~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~ 280 (443)
+|.+.... ..|..+..|+.|++++|+|. .+|..++++++|+.|.+.+|.+. ++|.+++ .+..|++|.+.+|+++
T Consensus 111 ynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig-~lt~lrelhiqgnrl~- 186 (264)
T KOG0617|consen 111 YNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIG-DLTRLRELHIQGNRLT- 186 (264)
T ss_pred ccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHH-HHHHHHHHhcccceee-
Confidence 44443322 33444556666666666665 55666666666666666666665 6666666 5666666666666665
Q ss_pred cCCccCcC
Q 040495 281 SIPVSLSN 288 (443)
Q Consensus 281 ~~~~~l~~ 288 (443)
.+|..+++
T Consensus 187 vlppel~~ 194 (264)
T KOG0617|consen 187 VLPPELAN 194 (264)
T ss_pred ecChhhhh
Confidence 45544443
|
|
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.4e-19 Score=142.88 Aligned_cols=164 Identities=29% Similarity=0.516 Sum_probs=106.9
Q ss_pred CCCCCcEEeCCCCcCCccCCccCcCCCCCCEEecccCcCccccchhhhCCCCCCEEEccCCCCcccCCCchhhHhhhcCC
Q 040495 264 NLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANC 343 (443)
Q Consensus 264 ~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~ 343 (443)
++.+++.|.+++|+++ .+|..++.+.+|+.|++++|++. ..|.+++.+++|+.|+++-|.+...+ ..|+.+
T Consensus 31 ~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~~lp-------rgfgs~ 101 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLNILP-------RGFGSF 101 (264)
T ss_pred chhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhhcCc-------cccCCC
Confidence 3455556666666665 55555666666666666666665 45555666666666666666554432 346666
Q ss_pred CCCCEEEccCCcCcc-cCChhHhhhccCCCEEeccCCcCeecCchhhhcCCCCCeEeCcCCcCcccCchhhcCCCCCCEE
Q 040495 344 SKLERLYFNRNRFQG-VLPQSMANFSSTIKQIAMGRNRISGTIPPGIRSHANLNWLTMDSNLFTGTIPPVIGELKNLQLL 422 (443)
Q Consensus 344 ~~L~~L~l~~n~l~~-~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L 422 (443)
+-|+.||+.+|++.. .+|..++.+ ..|+.|.|++|.|. .+|..++++++|+.|.+++|.+. ++|..++.++.|++|
T Consensus 102 p~levldltynnl~e~~lpgnff~m-~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrel 178 (264)
T KOG0617|consen 102 PALEVLDLTYNNLNENSLPGNFFYM-TTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLREL 178 (264)
T ss_pred chhhhhhccccccccccCCcchhHH-HHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHH
Confidence 666666666666643 345555553 56777777777776 67777777777777777777776 677777777777777
Q ss_pred EccCCcCcccCCccccCC
Q 040495 423 DLGGNFLQGSIPSSLGNL 440 (443)
Q Consensus 423 ~l~~n~l~~~~p~~~~~l 440 (443)
.+.+|+++ .+|..++++
T Consensus 179 hiqgnrl~-vlppel~~l 195 (264)
T KOG0617|consen 179 HIQGNRLT-VLPPELANL 195 (264)
T ss_pred hcccceee-ecChhhhhh
Confidence 77777776 666666554
|
|
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.7e-15 Score=151.53 Aligned_cols=152 Identities=32% Similarity=0.522 Sum_probs=127.4
Q ss_pred CCCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCC-----CccceeeCCC--C--CcEEEEEcCCCCCcccccccccCCC
Q 040495 28 ANSNETDRLALLAIKLQLHDPLGVTSSWNNSMSLC-----QWTGVTCGRR--H--QRVTRLDLRNQSIGGPLSPYVGNLS 98 (443)
Q Consensus 28 ~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~c-----~w~gv~c~~~--~--~~v~~L~l~~~~~~~~~~~~~~~l~ 98 (443)
..+.+.|..||.++|..+.++.. .+|.. ++| .|.|+.|... . .+|+.|+|+++.+.|.+|..+..++
T Consensus 367 ~~t~~~~~~aL~~~k~~~~~~~~--~~W~g--~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~ip~~i~~L~ 442 (623)
T PLN03150 367 SKTLLEEVSALQTLKSSLGLPLR--FGWNG--DPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPNDISKLR 442 (623)
T ss_pred cccCchHHHHHHHHHHhcCCccc--CCCCC--CCCCCcccccccceeeccCCCCceEEEEEECCCCCccccCCHHHhCCC
Confidence 34567889999999999876532 47964 344 6999999532 1 2589999999999999999999999
Q ss_pred CCCEEeCCCCcCCCCCchhhcCCCccCeEEccCCCCCCCCChhhhcCCCCceeeccCCcccccCCccccCC-cCccEeee
Q 040495 99 FLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSVDTNYLVGEIPSAIGSL-FKLERLFI 177 (443)
Q Consensus 99 ~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l-~~L~~L~l 177 (443)
+|+.|+|++|.+.|.+|..++.+++|+.|++++|.+++.+|..++++++|++|++++|.+++.+|..++.. .++..+++
T Consensus 443 ~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~ 522 (623)
T PLN03150 443 HLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNF 522 (623)
T ss_pred CCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999887653 45677777
Q ss_pred eccccC
Q 040495 178 FHNHIT 183 (443)
Q Consensus 178 ~~n~l~ 183 (443)
.+|...
T Consensus 523 ~~N~~l 528 (623)
T PLN03150 523 TDNAGL 528 (623)
T ss_pred cCCccc
Confidence 777543
|
|
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.30 E-value=5.9e-12 Score=122.44 Aligned_cols=196 Identities=34% Similarity=0.430 Sum_probs=102.2
Q ss_pred eEEccCCCCCCCCChhhhcCCCCceeeccCCcccccCCccccCCc-CccEeeeeccccCccCCccccCCCCCCEEEccCC
Q 040495 126 GLVLSNNSFSGTIPTNLSRRSNLIELSVDTNYLVGEIPSAIGSLF-KLERLFIFHNHITGQLPASIGNLSSLLAFDVREN 204 (443)
Q Consensus 126 ~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~-~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 204 (443)
.++...+.+. ..+..+..++.++.|++.+|.++ .+|....... +|+.|++++|.+. .+|..+..+++|+.|+++.|
T Consensus 97 ~l~~~~~~~~-~~~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLR-SNISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeeccccccc-cCchhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence 4666666654 22333445566777777777776 5555555553 6777777777766 44445566666666666666
Q ss_pred cCCcccccccCCCCCCEEEcccccCCCCCCccccCCCCCcEEEcccCcCcccCChhhhcCCCCCcEEeCCCCcCCccCCc
Q 040495 205 ILWGRIDSLVQLRNLRLLDIAFNHFSGMIPPPIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPV 284 (443)
Q Consensus 205 ~l~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~ 284 (443)
.+.......+..++|+.|++++|++. .+|........|+++.+++|.+. ..+..+. ++.++..+.+.+|++. ..+.
T Consensus 174 ~l~~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~-~~~~l~~l~l~~n~~~-~~~~ 249 (394)
T COG4886 174 DLSDLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLS-NLKNLSGLELSNNKLE-DLPE 249 (394)
T ss_pred hhhhhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhh-hcccccccccCCceee-eccc
Confidence 65554444334555555555555554 33333333344555555555322 2332232 4444555555555443 2234
Q ss_pred cCcCCCCCCEEecccCcCccccchhhhCCCCCCEEEccCCCCcccC
Q 040495 285 SLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLGTRT 330 (443)
Q Consensus 285 ~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 330 (443)
.++.++.++.|++++|.++.... ++...+++.|++++|.+....
T Consensus 250 ~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~ 293 (394)
T COG4886 250 SIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNAL 293 (394)
T ss_pred hhccccccceecccccccccccc--ccccCccCEEeccCccccccc
Confidence 44444455555555555543222 444445555555554444433
|
|
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.29 E-value=6.8e-12 Score=122.02 Aligned_cols=178 Identities=29% Similarity=0.477 Sum_probs=88.0
Q ss_pred CCCcEEEcccCcCcccCChhhhcCCC-CCcEEeCCCCcCCccCCccCcCCCCCCEEecccCcCccccchhhhCCCCCCEE
Q 040495 241 SSLEVISLSENRFTGSLPVDAGVNLP-NLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFL 319 (443)
Q Consensus 241 ~~L~~L~l~~n~l~~~~~~~~~~~~~-~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 319 (443)
+.++.+++.+|.++ .++.... ... +|+.|++++|.+. .+|..+..++.|+.|++++|++.. ++...+..+.|+.|
T Consensus 116 ~~l~~L~l~~n~i~-~i~~~~~-~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~~-l~~~~~~~~~L~~L 191 (394)
T COG4886 116 TNLTSLDLDNNNIT-DIPPLIG-LLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLSD-LPKLLSNLSNLNNL 191 (394)
T ss_pred cceeEEecCCcccc-cCccccc-cchhhcccccccccchh-hhhhhhhccccccccccCCchhhh-hhhhhhhhhhhhhe
Confidence 44555555555554 4444333 232 5555555555554 333444555555555555555552 23223345555555
Q ss_pred EccCCCCcccCCCchhhHhhhcCCCCCCEEEccCCcCcccCChhHhhhccCCCEEeccCCcCeecCchhhhcCCCCCeEe
Q 040495 320 NMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNRISGTIPPGIRSHANLNWLT 399 (443)
Q Consensus 320 ~l~~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~ 399 (443)
++++|.+....+. ......|+++.+++|++. ..+..+... .++..+.+.+|++. .++..++.++++++|+
T Consensus 192 ~ls~N~i~~l~~~-------~~~~~~L~~l~~~~N~~~-~~~~~~~~~-~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~ 261 (394)
T COG4886 192 DLSGNKISDLPPE-------IELLSALEELDLSNNSII-ELLSSLSNL-KNLSGLELSNNKLE-DLPESIGNLSNLETLD 261 (394)
T ss_pred eccCCccccCchh-------hhhhhhhhhhhhcCCcce-ecchhhhhc-ccccccccCCceee-eccchhccccccceec
Confidence 5555555544331 122333555555555433 333334332 44555555555555 2244555555566666
Q ss_pred CcCCcCcccCchhhcCCCCCCEEEccCCcCcccCC
Q 040495 400 MDSNLFTGTIPPVIGELKNLQLLDLGGNFLQGSIP 434 (443)
Q Consensus 400 L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p 434 (443)
+++|.++ .++. +....+++.|++++|.++...|
T Consensus 262 ~s~n~i~-~i~~-~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 262 LSNNQIS-SISS-LGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred ccccccc-cccc-ccccCccCEEeccCccccccch
Confidence 6666665 3333 5555666666666665554433
|
|
| >KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.9e-12 Score=115.87 Aligned_cols=251 Identities=17% Similarity=0.212 Sum_probs=120.0
Q ss_pred cccCCcCccEeeeeccccCcc----CCccccCCCCCCEEEccCCcCCccc-----------ccccCCCCCCEEEcccccC
Q 040495 165 AIGSLFKLERLFIFHNHITGQ----LPASIGNLSSLLAFDVRENILWGRI-----------DSLVQLRNLRLLDIAFNHF 229 (443)
Q Consensus 165 ~l~~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~l~~n~l~~~~-----------~~l~~l~~L~~L~l~~n~~ 229 (443)
.+..+..++++++++|.+... +...+.+.+.|+..+++.-...... +.+...++|++++||+|.+
T Consensus 25 ~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~ 104 (382)
T KOG1909|consen 25 ELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAF 104 (382)
T ss_pred HhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecccccc
Confidence 345567788888888887633 2334556677777777654221110 2344556788888888877
Q ss_pred CCCCCcc----ccCCCCCcEEEcccCcCcccCChhhhcCCCCCcEEeCCCCcCCccCCccCcCCCCCCEEecccCcCccc
Q 040495 230 SGMIPPP----IFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGR 305 (443)
Q Consensus 230 ~~~~~~~----l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~ 305 (443)
....++. +.++..|++|.|.+|.+.-.-...++. .|.++. .-.-.+.-+.|+++...+|.+...
T Consensus 105 G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~---al~~l~---------~~kk~~~~~~Lrv~i~~rNrlen~ 172 (382)
T KOG1909|consen 105 GPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGR---ALFELA---------VNKKAASKPKLRVFICGRNRLENG 172 (382)
T ss_pred CccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHH---HHHHHH---------HHhccCCCcceEEEEeeccccccc
Confidence 6554433 335667777777777664111111110 000000 001112233445555555544321
Q ss_pred c----chhhhCCCCCCEEEccCCCCcccCCCchhhHhhhcCCCCCCEEEccCCcCcccCChhHhh---hccCCCEEeccC
Q 040495 306 V----SVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQSMAN---FSSTIKQIAMGR 378 (443)
Q Consensus 306 ~----~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~---~~~~L~~L~L~~ 378 (443)
. ...|...+.|+.+.++.|.+..... ......+..|++|+.|||.+|.|+-.....+.. .++.|+.|++++
T Consensus 173 ga~~~A~~~~~~~~leevr~~qN~I~~eG~--~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~d 250 (382)
T KOG1909|consen 173 GATALAEAFQSHPTLEEVRLSQNGIRPEGV--TALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGD 250 (382)
T ss_pred cHHHHHHHHHhccccceEEEecccccCchh--HHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccc
Confidence 1 1123344555555555554433222 112234555555555555555554322222111 123455555555
Q ss_pred CcCeecCchhh-----hcCCCCCeEeCcCCcCccc----CchhhcCCCCCCEEEccCCcC
Q 040495 379 NRISGTIPPGI-----RSHANLNWLTMDSNLFTGT----IPPVIGELKNLQLLDLGGNFL 429 (443)
Q Consensus 379 n~l~~~~p~~l-----~~~~~L~~L~L~~n~~~~~----~p~~~~~l~~L~~L~l~~n~l 429 (443)
|.+...-...+ ...++|+.+.+.+|.++.. +-.++...+.|..|+|++|++
T Consensus 251 cll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 251 CLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred cccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 55544322221 2245566666666655511 222334455666666666665
|
|
| >KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.7e-13 Score=129.58 Aligned_cols=192 Identities=23% Similarity=0.375 Sum_probs=132.7
Q ss_pred CCCEEEcccccCCCCCCccccCCCCCcEEEcccCcCcccCChhhhcCCCCCcEEeCCCCcCCccCCccCcCCCCCCEEec
Q 040495 218 NLRLLDIAFNHFSGMIPPPIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEF 297 (443)
Q Consensus 218 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l 297 (443)
.-...|++.|.+. .+|..+..+..|+.+.++.|.+. .+|..+. ++..|+.++++.|+++ ..|..+..++ |+.|.+
T Consensus 76 dt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~-~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~ 150 (722)
T KOG0532|consen 76 DTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAIC-NLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIV 150 (722)
T ss_pred chhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhh-hhhHHHHhhhccchhh-cCChhhhcCc-ceeEEE
Confidence 3444566666665 56666666666777777777666 6666666 6777777777777776 5566666553 677777
Q ss_pred ccCcCccccchhhhCCCCCCEEEccCCCCcccCCCchhhHhhhcCCCCCCEEEccCCcCcccCChhHhhhccCCCEEecc
Q 040495 298 SRNQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMG 377 (443)
Q Consensus 298 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~L~ 377 (443)
++|+++ .+|..++..+.|..||.+.|.+....+ .++++.+|+.|.+..|++. .+|+.+..+ .|..||++
T Consensus 151 sNNkl~-~lp~~ig~~~tl~~ld~s~nei~slps-------ql~~l~slr~l~vrRn~l~-~lp~El~~L--pLi~lDfS 219 (722)
T KOG0532|consen 151 SNNKLT-SLPEEIGLLPTLAHLDVSKNEIQSLPS-------QLGYLTSLRDLNVRRNHLE-DLPEELCSL--PLIRLDFS 219 (722)
T ss_pred ecCccc-cCCcccccchhHHHhhhhhhhhhhchH-------HhhhHHHHHHHHHhhhhhh-hCCHHHhCC--ceeeeecc
Confidence 777776 455566677777777777777665543 3667777888888888877 677777754 47888888
Q ss_pred CCcCeecCchhhhcCCCCCeEeCcCCcCcccCchhhcCC---CCCCEEEccCC
Q 040495 378 RNRISGTIPPGIRSHANLNWLTMDSNLFTGTIPPVIGEL---KNLQLLDLGGN 427 (443)
Q Consensus 378 ~n~l~~~~p~~l~~~~~L~~L~L~~n~~~~~~p~~~~~l---~~L~~L~l~~n 427 (443)
+|+++ .+|.+|..++.|++|-|.+|.+. +-|..++.. .-.++|+..-+
T Consensus 220 cNkis-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 220 CNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred cCcee-ecchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhc
Confidence 88888 78888888888888888888887 555555432 33456666665
|
|
| >KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.26 E-value=7.9e-13 Score=118.23 Aligned_cols=251 Identities=14% Similarity=0.202 Sum_probs=156.1
Q ss_pred hhhcCCCCceeeccCCccccc----CCccccCCcCccEeeeeccccC---ccCCc-------cccCCCCCCEEEccCCcC
Q 040495 141 NLSRRSNLIELSVDTNYLVGE----IPSAIGSLFKLERLFIFHNHIT---GQLPA-------SIGNLSSLLAFDVRENIL 206 (443)
Q Consensus 141 ~l~~l~~L~~L~l~~n~l~~~----~p~~l~~l~~L~~L~l~~n~l~---~~~~~-------~l~~l~~L~~L~l~~n~l 206 (443)
.+.....++.+++++|.+... +...+.+.++|+..++++-... ..+|. .+..+++|++++|+.|-+
T Consensus 25 ~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~ 104 (382)
T KOG1909|consen 25 ELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAF 104 (382)
T ss_pred HhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecccccc
Confidence 345678899999999998643 3345667788999988764221 23333 345678999999999976
Q ss_pred Cccc-----ccccCCCCCCEEEcccccCCCCCCccccCCCCCcEEEcccCcCcccCChhhhcCCCCCcEEeCCCCcCCcc
Q 040495 207 WGRI-----DSLVQLRNLRLLDIAFNHFSGMIPPPIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGS 281 (443)
Q Consensus 207 ~~~~-----~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~ 281 (443)
.... .-+.++..|++|++.+|.+...-...++. .|.+|. .+. .++ ..+.|+++....|++...
T Consensus 105 G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~--al~~l~--~~k---k~~-----~~~~Lrv~i~~rNrlen~ 172 (382)
T KOG1909|consen 105 GPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGR--ALFELA--VNK---KAA-----SKPKLRVFICGRNRLENG 172 (382)
T ss_pred CccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHH--HHHHHH--HHh---ccC-----CCcceEEEEeeccccccc
Confidence 5332 45567899999999999886322222111 111111 010 111 334556666655555321
Q ss_pred ----CCccCcCCCCCCEEecccCcCccc----cchhhhCCCCCCEEEccCCCCcccCCCchhhHhhhcCCCCCCEEEccC
Q 040495 282 ----IPVSLSNASRLEMIEFSRNQFSGR----VSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNR 353 (443)
Q Consensus 282 ----~~~~l~~~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 353 (443)
+...+...+.|+.+.+..|.+... ....+..+++|+.|||.+|.++..... .+...++.+++|++|++++
T Consensus 173 ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~--~LakaL~s~~~L~El~l~d 250 (382)
T KOG1909|consen 173 GATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSV--ALAKALSSWPHLRELNLGD 250 (382)
T ss_pred cHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHH--HHHHHhcccchheeecccc
Confidence 122344456666666666665421 223456777777777777776654332 2225677777888888888
Q ss_pred CcCcccCChhHhh----hccCCCEEeccCCcCeec----CchhhhcCCCCCeEeCcCCcC
Q 040495 354 NRFQGVLPQSMAN----FSSTIKQIAMGRNRISGT----IPPGIRSHANLNWLTMDSNLF 405 (443)
Q Consensus 354 n~l~~~~p~~~~~----~~~~L~~L~L~~n~l~~~----~p~~l~~~~~L~~L~L~~n~~ 405 (443)
|.+.......+.. ..|.|+.+.+.+|.++-. +..++...+.|+.|+|++|.+
T Consensus 251 cll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 251 CLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred cccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 8877555444332 246788888888877643 334456677888888888888
|
|
| >KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.24 E-value=4.8e-13 Score=126.58 Aligned_cols=170 Identities=31% Similarity=0.386 Sum_probs=98.6
Q ss_pred EEEEcCCCCCcccccccccCCCCCCEEeCCCCcCCCCCchhhcCCCccCeEEccCCCCCCCCChhhhcCCCCceeeccCC
Q 040495 77 TRLDLRNQSIGGPLSPYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSVDTN 156 (443)
Q Consensus 77 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n 156 (443)
+..|++.|++. ++|..+..|..|+.+.++.|.+. .+|..++++..|++++++.|+++ .+|..++.|+ |+.|-+++|
T Consensus 78 ~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNN 153 (722)
T KOG0532|consen 78 VFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNN 153 (722)
T ss_pred hhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecC
Confidence 34455555543 34555555556666666666555 55556666666666666666665 5555555543 556666666
Q ss_pred cccccCCccccCCcCccEeeeeccccCccCCccccCCCCCCEEEccCCcCCcccccccCCCCCCEEEcccccCCCCCCcc
Q 040495 157 YLVGEIPSAIGSLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLRLLDIAFNHFSGMIPPP 236 (443)
Q Consensus 157 ~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~ 236 (443)
+++ .+|..++.+..|..|+.+.|.+. .+|..++.+.+|+.+.+..|.+...+..+..+ .|..||+++|++. .+|-.
T Consensus 154 kl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~lp~El~~L-pLi~lDfScNkis-~iPv~ 229 (722)
T KOG0532|consen 154 KLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLEDLPEELCSL-PLIRLDFSCNKIS-YLPVD 229 (722)
T ss_pred ccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhhCCHHHhCC-ceeeeecccCcee-ecchh
Confidence 655 55555665566666666666655 45555666666666666666555555444433 3555666666655 45666
Q ss_pred ccCCCCCcEEEcccCcCc
Q 040495 237 IFNISSLEVISLSENRFT 254 (443)
Q Consensus 237 l~~l~~L~~L~l~~n~l~ 254 (443)
|.+++.|++|.|.+|.++
T Consensus 230 fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 230 FRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred hhhhhhheeeeeccCCCC
Confidence 666666666666666655
|
|
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.2e-11 Score=102.21 Aligned_cols=123 Identities=21% Similarity=0.320 Sum_probs=37.5
Q ss_pred CCCCEEecccCcCccccchhhh-CCCCCCEEEccCCCCcccCCCchhhHhhhcCCCCCCEEEccCCcCcccCChhHhhhc
Q 040495 290 SRLEMIEFSRNQFSGRVSVDFS-RLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFS 368 (443)
Q Consensus 290 ~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~ 368 (443)
.++++|++.+|.++.. +.++ .+.+|+.|++++|.++.... +..++.|++|++++|+++ .+...+...+
T Consensus 19 ~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l~~--------l~~L~~L~~L~L~~N~I~-~i~~~l~~~l 87 (175)
T PF14580_consen 19 VKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKLEG--------LPGLPRLKTLDLSNNRIS-SISEGLDKNL 87 (175)
T ss_dssp -------------------S--TT-TT--EEE-TTS--S--TT------------TT--EEE--SS----S-CHHHHHH-
T ss_pred cccccccccccccccc--cchhhhhcCCCEEECCCCCCccccC--------ccChhhhhhcccCCCCCC-ccccchHHhC
Confidence 3445555555555422 1233 34555555555555554432 455566666666666666 4444333223
Q ss_pred cCCCEEeccCCcCeec-CchhhhcCCCCCeEeCcCCcCcccCch----hhcCCCCCCEEEc
Q 040495 369 STIKQIAMGRNRISGT-IPPGIRSHANLNWLTMDSNLFTGTIPP----VIGELKNLQLLDL 424 (443)
Q Consensus 369 ~~L~~L~L~~n~l~~~-~p~~l~~~~~L~~L~L~~n~~~~~~p~----~~~~l~~L~~L~l 424 (443)
++|+.|++++|++... --..++.+++|+.|+|.+|+++.. +. .+..+|+|+.||-
T Consensus 88 p~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~-~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 88 PNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEK-KNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGS-TTHHHHHHHH-TT-SEETT
T ss_pred CcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccch-hhHHHHHHHHcChhheeCC
Confidence 5666666666666532 113456666777777777766622 22 4455677777664
|
|
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.20 E-value=3.8e-12 Score=117.01 Aligned_cols=167 Identities=18% Similarity=0.207 Sum_probs=73.1
Q ss_pred cCCCCCCEEEccCCcCCccc---ccccCCCCCCEEEcccccCCCCCCccc-cCCCCCcEEEcccCcCcccCChhhhcCCC
Q 040495 191 GNLSSLLAFDVRENILWGRI---DSLVQLRNLRLLDIAFNHFSGMIPPPI-FNISSLEVISLSENRFTGSLPVDAGVNLP 266 (443)
Q Consensus 191 ~~l~~L~~L~l~~n~l~~~~---~~l~~l~~L~~L~l~~n~~~~~~~~~l-~~l~~L~~L~l~~n~l~~~~~~~~~~~~~ 266 (443)
..|++++.|+++.|-+.... .....+|+|+.|+++.|.+........ ..++.|+.|.++.|+++-.--..+...+|
T Consensus 143 k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fP 222 (505)
T KOG3207|consen 143 KILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFP 222 (505)
T ss_pred hhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCC
Confidence 34445555555554443322 333445555555555555432211111 13445555555555554211112222455
Q ss_pred CCcEEeCCCCcCCccCCccCcCCCCCCEEecccCcCcccc-chhhhCCCCCCEEEccCCCCcccCCCchhhHhhhcCCCC
Q 040495 267 NLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRV-SVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSK 345 (443)
Q Consensus 267 ~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~ 345 (443)
+|+.|++..|.....-......+..|++|+|++|++-... ....+.++.|..|+++.+.+......+.+.......+++
T Consensus 223 sl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~k 302 (505)
T KOG3207|consen 223 SLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPK 302 (505)
T ss_pred cHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhccccc
Confidence 5555555555311122222333445555555555544321 122345555555555555554433322222222344455
Q ss_pred CCEEEccCCcCc
Q 040495 346 LERLYFNRNRFQ 357 (443)
Q Consensus 346 L~~L~l~~n~l~ 357 (443)
|++|++.+|++.
T Consensus 303 L~~L~i~~N~I~ 314 (505)
T KOG3207|consen 303 LEYLNISENNIR 314 (505)
T ss_pred ceeeecccCccc
Confidence 555555555554
|
|
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.4e-11 Score=108.12 Aligned_cols=132 Identities=24% Similarity=0.287 Sum_probs=89.6
Q ss_pred cCCCCCCEEecccCcCccccchhhhCCCCCCEEEccCCCCcccCCCchhhHhhhcCCCCCCEEEccCCcCcccCChhHhh
Q 040495 287 SNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQSMAN 366 (443)
Q Consensus 287 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~ 366 (443)
.....|+++|+++|.++ .+.+++.-.|.++.|++++|.+..... +..+++|+.||+++|.++ .+-.|-..
T Consensus 281 dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v~n--------La~L~~L~~LDLS~N~Ls-~~~Gwh~K 350 (490)
T KOG1259|consen 281 DTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTVQN--------LAELPQLQLLDLSGNLLA-ECVGWHLK 350 (490)
T ss_pred chHhhhhhccccccchh-hhhhhhhhccceeEEeccccceeeehh--------hhhcccceEeecccchhH-hhhhhHhh
Confidence 33456777777777776 344556667777888888777765432 666777888888888776 44444444
Q ss_pred hccCCCEEeccCCcCeecCchhhhcCCCCCeEeCcCCcCccc-CchhhcCCCCCCEEEccCCcCcc
Q 040495 367 FSSTIKQIAMGRNRISGTIPPGIRSHANLNWLTMDSNLFTGT-IPPVIGELKNLQLLDLGGNFLQG 431 (443)
Q Consensus 367 ~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~n~~~~~-~p~~~~~l~~L~~L~l~~n~l~~ 431 (443)
+ -+++.|.|++|.+.. + ..++.+-+|+.||+++|+|... -...++++|-|+.+.+.+|++.+
T Consensus 351 L-GNIKtL~La~N~iE~-L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 351 L-GNIKTLKLAQNKIET-L-SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred h-cCEeeeehhhhhHhh-h-hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence 3 567788888887652 2 4567777788888888877621 12357778888888888888763
|
|
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.13 E-value=5.1e-12 Score=116.21 Aligned_cols=208 Identities=20% Similarity=0.231 Sum_probs=144.5
Q ss_pred CCCCCEEEccCCcCCccc--ccccCCCCCCEEEcccccCCCCCC--ccccCCCCCcEEEcccCcCcccCChhhhcCCCCC
Q 040495 193 LSSLLAFDVRENILWGRI--DSLVQLRNLRLLDIAFNHFSGMIP--PPIFNISSLEVISLSENRFTGSLPVDAGVNLPNL 268 (443)
Q Consensus 193 l~~L~~L~l~~n~l~~~~--~~l~~l~~L~~L~l~~n~~~~~~~--~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L 268 (443)
+.+|+.+.+.++...... .....+++++.||++.|-+....+ .....+++|+.|+++.|.+.-.........++++
T Consensus 120 ~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~l 199 (505)
T KOG3207|consen 120 LKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHL 199 (505)
T ss_pred HHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhh
Confidence 334444444443333222 345568999999999998764322 3345789999999999988755554444467899
Q ss_pred cEEeCCCCcCCcc-CCccCcCCCCCCEEecccCcCccccchhhhCCCCCCEEEccCCCCcccCCCchhhHhhhcCCCCCC
Q 040495 269 RQLSPNGNNFTGS-IPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLE 347 (443)
Q Consensus 269 ~~L~L~~n~l~~~-~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~L~ 347 (443)
+.|.++.|+++.. +......+|+|+.|++..|...........-+..|+.|||++|++-..... .....++.|+
T Consensus 200 K~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~-----~~~~~l~~L~ 274 (505)
T KOG3207|consen 200 KQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQG-----YKVGTLPGLN 274 (505)
T ss_pred heEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccc-----cccccccchh
Confidence 9999999998742 334456789999999999964434444456678899999999987665421 4577888999
Q ss_pred EEEccCCcCccc-CChh----HhhhccCCCEEeccCCcCeecCc--hhhhcCCCCCeEeCcCCcCc
Q 040495 348 RLYFNRNRFQGV-LPQS----MANFSSTIKQIAMGRNRISGTIP--PGIRSHANLNWLTMDSNLFT 406 (443)
Q Consensus 348 ~L~l~~n~l~~~-~p~~----~~~~~~~L~~L~L~~n~l~~~~p--~~l~~~~~L~~L~L~~n~~~ 406 (443)
.|+++.+.+... +|+. .....++|++|++..|++. .++ ..+..+.+|+.|.+..|.++
T Consensus 275 ~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~-~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 275 QLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR-DWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred hhhccccCcchhcCCCccchhhhcccccceeeecccCccc-cccccchhhccchhhhhhccccccc
Confidence 999999988732 2322 1123578999999999986 333 34666778888888888876
|
|
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.9e-10 Score=117.37 Aligned_cols=113 Identities=20% Similarity=0.392 Sum_probs=92.3
Q ss_pred CCCEEecccCcCccccchhhhCCCCCCEEEccCCCCcccCCCchhhHhhhcCCCCCCEEEccCCcCcccCChhHhhhccC
Q 040495 291 RLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFSST 370 (443)
Q Consensus 291 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~ 370 (443)
.++.|+|++|.+.|.+|..+..+++|+.|++++|.+.+..| ..+..+++|+.|++++|+++|.+|..+..+ ++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP------~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L-~~ 491 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIP------PSLGSITSLEVLDLSYNSFNGSIPESLGQL-TS 491 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCC------hHHhCCCCCCEEECCCCCCCCCCchHHhcC-CC
Confidence 36788888888888888888888899999999988888877 567888889999999999988888888875 78
Q ss_pred CCEEeccCCcCeecCchhhhcC-CCCCeEeCcCCcCcccCc
Q 040495 371 IKQIAMGRNRISGTIPPGIRSH-ANLNWLTMDSNLFTGTIP 410 (443)
Q Consensus 371 L~~L~L~~n~l~~~~p~~l~~~-~~L~~L~L~~n~~~~~~p 410 (443)
|+.|+|++|+++|.+|..+... .++..+++.+|......|
T Consensus 492 L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 492 LRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred CCEEECcCCcccccCChHHhhccccCceEEecCCccccCCC
Confidence 8999999999988888887653 456788888886553343
|
|
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.08 E-value=3.2e-11 Score=105.87 Aligned_cols=130 Identities=21% Similarity=0.280 Sum_probs=59.5
Q ss_pred CCCCCEEEcccccCCCCCCccccCCCCCcEEEcccCcCcccCChhhhcCCCCCcEEeCCCCcCCccCCccCcCCCCCCEE
Q 040495 216 LRNLRLLDIAFNHFSGMIPPPIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMI 295 (443)
Q Consensus 216 l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L 295 (443)
+..|+++|+++|.++ .+.+++.-.+.++.|+++.|.+. .+.. +. .+++|+.|++++|.++ .+..+-.++-++++|
T Consensus 283 Wq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v~n-La-~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL 357 (490)
T KOG1259|consen 283 WQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TVQN-LA-ELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTL 357 (490)
T ss_pred Hhhhhhccccccchh-hhhhhhhhccceeEEecccccee-eehh-hh-hcccceEeecccchhH-hhhhhHhhhcCEeee
Confidence 344455555555444 22333334444555555555444 2222 11 3455555555555544 233333344455555
Q ss_pred ecccCcCccccchhhhCCCCCCEEEccCCCCcccCCCchhhHhhhcCCCCCCEEEccCCcCc
Q 040495 296 EFSRNQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQ 357 (443)
Q Consensus 296 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 357 (443)
.+++|.+... ..+.++-+|..||+++|++..... ...+++++-|+.+.+.+|++.
T Consensus 358 ~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~lde-----V~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 358 KLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDE-----VNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred ehhhhhHhhh--hhhHhhhhheeccccccchhhHHH-----hcccccccHHHHHhhcCCCcc
Confidence 5555544321 123444455555555555433221 134555555555555555555
|
|
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=99.06 E-value=3.6e-10 Score=94.86 Aligned_cols=110 Identities=24% Similarity=0.287 Sum_probs=30.2
Q ss_pred CCCCCcEEEcccCcCcccCChhhhcCCCCCcEEeCCCCcCCccCCccCcCCCCCCEEecccCcCccccchhhhCCCCCCE
Q 040495 239 NISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSF 318 (443)
Q Consensus 239 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 318 (443)
+..++++|++.+|.++ .+. .+...+.+|+.|++++|.++. ++ .+..+++|++|++++|.++...+.....+++|+.
T Consensus 17 n~~~~~~L~L~~n~I~-~Ie-~L~~~l~~L~~L~Ls~N~I~~-l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~ 92 (175)
T PF14580_consen 17 NPVKLRELNLRGNQIS-TIE-NLGATLDKLEVLDLSNNQITK-LE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQE 92 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS---S-CHHHHHH-TT--E
T ss_pred cccccccccccccccc-ccc-chhhhhcCCCEEECCCCCCcc-cc-CccChhhhhhcccCCCCCCccccchHHhCCcCCE
Confidence 3345566666666665 332 222235566666666666652 22 3455666666666666666432221234666666
Q ss_pred EEccCCCCcccCCCchhhHhhhcCCCCCCEEEccCCcCc
Q 040495 319 LNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQ 357 (443)
Q Consensus 319 L~l~~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 357 (443)
|++++|++.....- ..+..+++|++|++.+|+++
T Consensus 93 L~L~~N~I~~l~~l-----~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 93 LYLSNNKISDLNEL-----EPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp EE-TTS---SCCCC-----GGGGG-TT--EEE-TT-GGG
T ss_pred EECcCCcCCChHHh-----HHHHcCCCcceeeccCCccc
Confidence 66666666543221 33555666666666666665
|
|
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.99 E-value=5.8e-10 Score=116.38 Aligned_cols=251 Identities=21% Similarity=0.255 Sum_probs=137.9
Q ss_pred CcEEEEEcCCCC--CcccccccccCCCCCCEEeCCCCcCCCCCchhhcCCCccCeEEccCCCCCCCCChhhhcCCCCcee
Q 040495 74 QRVTRLDLRNQS--IGGPLSPYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIEL 151 (443)
Q Consensus 74 ~~v~~L~l~~~~--~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L 151 (443)
..+++|-+..+. +.....+.|..++.|++|||++|.--+.+|..++++-+|++|+++++.++ .+|..+.++.+|.+|
T Consensus 545 ~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~L 623 (889)
T KOG4658|consen 545 PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYL 623 (889)
T ss_pred CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhhee
Confidence 346677777665 33333445777888888888887666678888888888888888888887 788888888888888
Q ss_pred eccCCcccccCCccccCCcCccEeeeeccccC--ccCCccccCCCCCCEEEccCCcCCcccccccCCCCCC----EEEcc
Q 040495 152 SVDTNYLVGEIPSAIGSLFKLERLFIFHNHIT--GQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLR----LLDIA 225 (443)
Q Consensus 152 ~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~--~~~~~~l~~l~~L~~L~l~~n~l~~~~~~l~~l~~L~----~L~l~ 225 (443)
++..+.....+|.....+++|++|.+...... ...-..+.++.+|+.+....... .....+..+..|. .+.+.
T Consensus 624 nl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~-~~~e~l~~~~~L~~~~~~l~~~ 702 (889)
T KOG4658|consen 624 NLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV-LLLEDLLGMTRLRSLLQSLSIE 702 (889)
T ss_pred ccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh-HhHhhhhhhHHHHHHhHhhhhc
Confidence 88877655455665666888888887765422 11112233344444443322211 0001111122221 22222
Q ss_pred cccCCCCCCccccCCCCCcEEEcccCcCcccCChhhh-----cC-CCCCcEEeCCCCcCCccCCccCcCCCCCCEEeccc
Q 040495 226 FNHFSGMIPPPIFNISSLEVISLSENRFTGSLPVDAG-----VN-LPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSR 299 (443)
Q Consensus 226 ~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~-----~~-~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~ 299 (443)
++.. ...+..+..+.+|+.|.+.++.+.. +..... .. ++++..+...++... ..+.+.-..++|+.|.+..
T Consensus 703 ~~~~-~~~~~~~~~l~~L~~L~i~~~~~~e-~~~~~~~~~~~~~~f~~l~~~~~~~~~~~-r~l~~~~f~~~L~~l~l~~ 779 (889)
T KOG4658|consen 703 GCSK-RTLISSLGSLGNLEELSILDCGISE-IVIEWEESLIVLLCFPNLSKVSILNCHML-RDLTWLLFAPHLTSLSLVS 779 (889)
T ss_pred cccc-ceeecccccccCcceEEEEcCCCch-hhcccccccchhhhHHHHHHHHhhccccc-cccchhhccCcccEEEEec
Confidence 2221 1344556677788888888777652 111100 00 122222222222211 1222223456777777777
Q ss_pred CcCccccchhhhCCCCCCEEEccCCCCccc
Q 040495 300 NQFSGRVSVDFSRLKNLSFLNMGINNLGTR 329 (443)
Q Consensus 300 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 329 (443)
+.....+......+..+..+.+..+.+.+.
T Consensus 780 ~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l 809 (889)
T KOG4658|consen 780 CRLLEDIIPKLKALLELKELILPFNKLEGL 809 (889)
T ss_pred ccccccCCCHHHHhhhcccEEecccccccc
Confidence 665544444445555555555555554443
|
|
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.98 E-value=8.6e-10 Score=115.15 Aligned_cols=105 Identities=25% Similarity=0.263 Sum_probs=59.1
Q ss_pred CCCEEeCCCCc--CCCCCchhhcCCCccCeEEccCCCCCCCCChhhhcCCCCceeeccCCcccccCCccccCCcCccEee
Q 040495 99 FLRYINLANNG--FLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSVDTNYLVGEIPSAIGSLFKLERLF 176 (443)
Q Consensus 99 ~L~~L~L~~n~--~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ 176 (443)
.|++|-+.+|. +.....+.|..++.|++||+++|.--+.+|..++++-+|++|++++..+. .+|..++++.+|.+|+
T Consensus 546 ~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Ln 624 (889)
T KOG4658|consen 546 KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLN 624 (889)
T ss_pred ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheec
Confidence 46666555554 33223333555666666666655444466666666666666666666655 5666666666666666
Q ss_pred eeccccCccCCccccCCCCCCEEEccCC
Q 040495 177 IFHNHITGQLPASIGNLSSLLAFDVREN 204 (443)
Q Consensus 177 l~~n~l~~~~~~~l~~l~~L~~L~l~~n 204 (443)
+..+.-...+|.....+++|++|.+...
T Consensus 625 l~~~~~l~~~~~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 625 LEVTGRLESIPGILLELQSLRVLRLPRS 652 (889)
T ss_pred cccccccccccchhhhcccccEEEeecc
Confidence 6655443334444444566666655443
|
|
| >KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.86 E-value=2.4e-10 Score=111.45 Aligned_cols=106 Identities=25% Similarity=0.349 Sum_probs=50.9
Q ss_pred cCCCCceeeccCCcccccCCccccCCcCccEeeeeccccCccCCccccCCCCCCEEEccCCcCCcccccccCCCCCCEEE
Q 040495 144 RRSNLIELSVDTNYLVGEIPSAIGSLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLRLLD 223 (443)
Q Consensus 144 ~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~ 223 (443)
.+..++.+.+..|.+. .+-..+..+.+|+.+++.+|.+.. +...+..+++|++|++++|.++.. ..+..++.|+.|+
T Consensus 70 ~l~~l~~l~l~~n~i~-~~~~~l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~~i-~~l~~l~~L~~L~ 146 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIA-KILNHLSKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKITKL-EGLSTLTLLKELN 146 (414)
T ss_pred HhHhHHhhccchhhhh-hhhcccccccceeeeeccccchhh-cccchhhhhcchheeccccccccc-cchhhccchhhhe
Confidence 3445555556555554 222335556666666666666652 222244455555555555554432 2222333355555
Q ss_pred cccccCCCCCCccccCCCCCcEEEcccCcCc
Q 040495 224 IAFNHFSGMIPPPIFNISSLEVISLSENRFT 254 (443)
Q Consensus 224 l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~ 254 (443)
+++|.+... ..+..++.|+.+++++|.+.
T Consensus 147 l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~ 175 (414)
T KOG0531|consen 147 LSGNLISDI--SGLESLKSLKLLDLSYNRIV 175 (414)
T ss_pred eccCcchhc--cCCccchhhhcccCCcchhh
Confidence 555554421 22333444455555555444
|
|
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.82 E-value=7.1e-11 Score=103.64 Aligned_cols=230 Identities=18% Similarity=0.143 Sum_probs=129.4
Q ss_pred CccceeeCCCCCcEEEEEcCCCCCcccccccccCCC--CCCEEeCCCCcCCCC-CchhhcCC-CccCeEEccCCCCCCC-
Q 040495 63 QWTGVTCGRRHQRVTRLDLRNQSIGGPLSPYVGNLS--FLRYINLANNGFLGE-IPPQIGRL-NMLEGLVLSNNSFSGT- 137 (443)
Q Consensus 63 ~w~gv~c~~~~~~v~~L~l~~~~~~~~~~~~~~~l~--~L~~L~L~~n~~~~~-~~~~l~~l-~~L~~L~l~~n~~~~~- 137 (443)
.|++..-++ .--+.+|+.+..+. |+.+..+. ....+.+....+... +.+.+.-. ++|++||+++..++..
T Consensus 127 Rfyr~~~de--~lW~~lDl~~r~i~---p~~l~~l~~rgV~v~Rlar~~~~~prlae~~~~frsRlq~lDLS~s~it~st 201 (419)
T KOG2120|consen 127 RFYRLASDE--SLWQTLDLTGRNIH---PDVLGRLLSRGVIVFRLARSFMDQPRLAEHFSPFRSRLQHLDLSNSVITVST 201 (419)
T ss_pred HHhhccccc--cceeeeccCCCccC---hhHHHHHHhCCeEEEEcchhhhcCchhhhhhhhhhhhhHHhhcchhheeHHH
Confidence 355555444 45678888887664 33333332 233444443322221 11212111 3588888888877632
Q ss_pred CChhhhcCCCCceeeccCCcccccCCccccCCcCccEeeeeccc-cCccCC-ccccCCCCCCEEEccCCcCCccc--ccc
Q 040495 138 IPTNLSRRSNLIELSVDTNYLVGEIPSAIGSLFKLERLFIFHNH-ITGQLP-ASIGNLSSLLAFDVRENILWGRI--DSL 213 (443)
Q Consensus 138 ~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~-l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~--~~l 213 (443)
+...++.+.+|+.|.+.++++...+...+++-.+|+.++++.+. ++..-. --+.+++.|..|+++.|.+.... ..+
T Consensus 202 l~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V 281 (419)
T KOG2120|consen 202 LHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAV 281 (419)
T ss_pred HHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHH
Confidence 34445678888888888888887777777777888888887753 331111 12457778888888887665444 122
Q ss_pred cC-CCCCCEEEcccccCC---CCCCccccCCCCCcEEEcccCc-CcccCChhhhcCCCCCcEEeCCCCcCCccCCc---c
Q 040495 214 VQ-LRNLRLLDIAFNHFS---GMIPPPIFNISSLEVISLSENR-FTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPV---S 285 (443)
Q Consensus 214 ~~-l~~L~~L~l~~n~~~---~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~---~ 285 (443)
.+ -++|+.|+++++.-. ..+..-...+++|.+||++++. ++......++ +++.|+++.++.|.. .+|. .
T Consensus 282 ~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~-kf~~L~~lSlsRCY~--i~p~~~~~ 358 (419)
T KOG2120|consen 282 AHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF-KFNYLQHLSLSRCYD--IIPETLLE 358 (419)
T ss_pred hhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHH-hcchheeeehhhhcC--CChHHeee
Confidence 22 256777777765321 1111222356677777777663 3322222333 667777777766642 2232 2
Q ss_pred CcCCCCCCEEecccC
Q 040495 286 LSNASRLEMIEFSRN 300 (443)
Q Consensus 286 l~~~~~L~~L~l~~n 300 (443)
+...+.|.+|++.++
T Consensus 359 l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 359 LNSKPSLVYLDVFGC 373 (419)
T ss_pred eccCcceEEEEeccc
Confidence 445566666666554
|
|
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=98.77 E-value=5.2e-09 Score=72.17 Aligned_cols=61 Identities=26% Similarity=0.446 Sum_probs=41.0
Q ss_pred cCCCEEeccCCcCeecCchhhhcCCCCCeEeCcCCcCcccCchhhcCCCCCCEEEccCCcC
Q 040495 369 STIKQIAMGRNRISGTIPPGIRSHANLNWLTMDSNLFTGTIPPVIGELKNLQLLDLGGNFL 429 (443)
Q Consensus 369 ~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l 429 (443)
|+|++|++++|+++..-+..+..+++|++|++++|.+...-|+.|.++++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 3566777777777644445666777777777777777655555677777777777777764
|
... |
| >KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.75 E-value=8.4e-10 Score=107.68 Aligned_cols=250 Identities=25% Similarity=0.281 Sum_probs=142.2
Q ss_pred CCCCCCEEeCCCCcCCCCCchhhcCCCccCeEEccCCCCCCCCChhhhcCCCCceeeccCCcccccCCccccCCcCccEe
Q 040495 96 NLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSVDTNYLVGEIPSAIGSLFKLERL 175 (443)
Q Consensus 96 ~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L 175 (443)
.+..++.+++..|.+. .+-..+..+++|+.+++.+|.+. .+...+..+++|++|++++|.++... .+..++.|+.|
T Consensus 70 ~l~~l~~l~l~~n~i~-~~~~~l~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L 145 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIA-KILNHLSKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKEL 145 (414)
T ss_pred HhHhHHhhccchhhhh-hhhcccccccceeeeeccccchh-hcccchhhhhcchheecccccccccc--chhhccchhhh
Confidence 4556666666666665 33334666777777777777776 33333566777777777777776332 24556667777
Q ss_pred eeeccccCccCCccccCCCCCCEEEccCCcCCccccc-ccCCCCCCEEEcccccCCCCCCccccCCCCCcEEEcccCcCc
Q 040495 176 FIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDS-LVQLRNLRLLDIAFNHFSGMIPPPIFNISSLEVISLSENRFT 254 (443)
Q Consensus 176 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~-l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~ 254 (443)
++.+|.++.. ..+..++.|+.+++++|.+...... ...+.+++.+++..|.+.. ...+.....+..+++.+|.++
T Consensus 146 ~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~--i~~~~~~~~l~~~~l~~n~i~ 221 (414)
T KOG0531|consen 146 NLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIRE--IEGLDLLKKLVLLSLLDNKIS 221 (414)
T ss_pred eeccCcchhc--cCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhc--ccchHHHHHHHHhhcccccce
Confidence 7777777622 2344466777777777766554432 4566677777777776642 223333444444566666665
Q ss_pred ccCChhhhcCCC--CCcEEeCCCCcCCccCCccCcCCCCCCEEecccCcCccccchhhhCCCCCCEEEccCCCCcccCCC
Q 040495 255 GSLPVDAGVNLP--NLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLGTRTAN 332 (443)
Q Consensus 255 ~~~~~~~~~~~~--~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 332 (443)
..-+.. ... +|+.+++.+|++. ..+..+..+..+..+++..|++...-. +...+.+..+....|.+......
T Consensus 222 ~~~~l~---~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 295 (414)
T KOG0531|consen 222 KLEGLN---ELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNLEG--LERLPKLSELWLNDNKLALSEAI 295 (414)
T ss_pred eccCcc---cchhHHHHHHhcccCccc-cccccccccccccccchhhcccccccc--ccccchHHHhccCcchhcchhhh
Confidence 221111 112 2677777777776 333455666677777777776664322 33445555555555554422110
Q ss_pred chhhHhhhcCCCCCCEEEccCCcCcccCC
Q 040495 333 ELDFINLLANCSKLERLYFNRNRFQGVLP 361 (443)
Q Consensus 333 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~p 361 (443)
. ........+.++...+..|......+
T Consensus 296 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (414)
T KOG0531|consen 296 S--QEYITSAAPTLVTLTLELNPIRKISS 322 (414)
T ss_pred h--ccccccccccccccccccCccccccc
Confidence 0 00114455666777777776664443
|
|
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.3e-08 Score=70.08 Aligned_cols=57 Identities=33% Similarity=0.473 Sum_probs=23.3
Q ss_pred CcEEeCCCCcCCccCCccCcCCCCCCEEecccCcCccccchhhhCCCCCCEEEccCC
Q 040495 268 LRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGIN 324 (443)
Q Consensus 268 L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 324 (443)
|++|++++|+++...+..|..+++|++|++++|+++...+..|.++++|++|++++|
T Consensus 3 L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 3 LESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp ESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred CcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 344444444444332333444444444444444444333333444444444444433
|
... |
| >KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.58 E-value=2.2e-09 Score=105.01 Aligned_cols=128 Identities=22% Similarity=0.283 Sum_probs=86.0
Q ss_pred CCCcEEeCCCCcCCccCCccCcCCCCCCEEecccCcCccccchhhhCCCCCCEEEccCCCCcccCCCchhhHhhhcCCCC
Q 040495 266 PNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSK 345 (443)
Q Consensus 266 ~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~ 345 (443)
..|...+.++|.+. .+..++.-++.++.|+|++|+++..- .+..+++|+.||+++|.+....- -...+|.
T Consensus 164 n~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~------l~~~gc~- 233 (1096)
T KOG1859|consen 164 NKLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQ------LSMVGCK- 233 (1096)
T ss_pred hhHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccc------cchhhhh-
Confidence 45677777788777 66677777788888888888887433 57778888888888888776544 2233444
Q ss_pred CCEEEccCCcCcccCChhHhhhccCCCEEeccCCcCeecC-chhhhcCCCCCeEeCcCCcCc
Q 040495 346 LERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNRISGTI-PPGIRSHANLNWLTMDSNLFT 406 (443)
Q Consensus 346 L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~-p~~l~~~~~L~~L~L~~n~~~ 406 (443)
|..|.+++|.++ .+ .++.++ .+|+.||+++|-+.+.- -..+..+..|+.|+|.||++-
T Consensus 234 L~~L~lrnN~l~-tL-~gie~L-ksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 234 LQLLNLRNNALT-TL-RGIENL-KSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred heeeeecccHHH-hh-hhHHhh-hhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 777788887766 22 234554 67777788877766531 122445566777777777765
|
|
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.57 E-value=2.7e-09 Score=93.90 Aligned_cols=86 Identities=23% Similarity=0.201 Sum_probs=38.4
Q ss_pred CcEEEcccCcCcccCChhhhcCCCCCcEEeCCCCcCCccCCccCcCCCCCCEEecccCc-Ccccc-chhhhCCCCCCEEE
Q 040495 243 LEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQ-FSGRV-SVDFSRLKNLSFLN 320 (443)
Q Consensus 243 L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~-l~~~~-~~~~~~l~~L~~L~ 320 (443)
|+++|+++..++..--..+..++.+|+.|.+.++++.+.+...+++..+|+.|+++.+. ++..- ...+..++.|..|+
T Consensus 187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LN 266 (419)
T KOG2120|consen 187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELN 266 (419)
T ss_pred hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcC
Confidence 44455544444422222223344555555555555554444455555555555555432 22111 11234455555555
Q ss_pred ccCCCCcc
Q 040495 321 MGINNLGT 328 (443)
Q Consensus 321 l~~n~l~~ 328 (443)
++.+.+..
T Consensus 267 lsWc~l~~ 274 (419)
T KOG2120|consen 267 LSWCFLFT 274 (419)
T ss_pred chHhhccc
Confidence 55554443
|
|
| >PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.1e-07 Score=60.09 Aligned_cols=39 Identities=59% Similarity=1.024 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHhCC-CCCCCCCCCCCC--CCCCCccceeeC
Q 040495 32 ETDRLALLAIKLQLH-DPLGVTSSWNNS--MSLCQWTGVTCG 70 (443)
Q Consensus 32 ~~~~~~l~~~~~~~~-~~~~~~~~w~~~--~~~c~w~gv~c~ 70 (443)
++|++||++||.++. +|.+.+.+|... .++|.|.||+|+
T Consensus 2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~~~~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 2 NQDRQALLAFKKSLNNDPSGVLSSWNPSSDSDPCSWSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHHCTT-SC-CCCTT--TT--S-CCCSTTEEE-
T ss_pred cHHHHHHHHHHHhcccccCcccccCCCcCCCCCeeeccEEeC
Confidence 689999999999999 577889999987 799999999995
|
LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A. |
| >KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.1e-08 Score=79.81 Aligned_cols=87 Identities=24% Similarity=0.356 Sum_probs=46.3
Q ss_pred hcCCCCCCEEEccCCcCcccCChhHhhhccCCCEEeccCCcCeecCchhhhcCCCCCeEeCcCCcCcccCchhhcCCCCC
Q 040495 340 LANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNRISGTIPPGIRSHANLNWLTMDSNLFTGTIPPVIGELKNL 419 (443)
Q Consensus 340 ~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~n~~~~~~p~~~~~l~~L 419 (443)
+.....|+..++++|.|. ..|..+...++..+.|++++|+++ .+|..++.++.|+.++++.|.+. ..|+.+..+.+|
T Consensus 49 l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l 125 (177)
T KOG4579|consen 49 LSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKL 125 (177)
T ss_pred HhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhH
Confidence 334444555555555555 445444444445555555555555 45555555555555555555555 455555555555
Q ss_pred CEEEccCCcC
Q 040495 420 QLLDLGGNFL 429 (443)
Q Consensus 420 ~~L~l~~n~l 429 (443)
..||..+|..
T Consensus 126 ~~Lds~~na~ 135 (177)
T KOG4579|consen 126 DMLDSPENAR 135 (177)
T ss_pred HHhcCCCCcc
Confidence 5555555544
|
|
| >KOG2982 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.50 E-value=3.1e-08 Score=87.30 Aligned_cols=86 Identities=14% Similarity=0.121 Sum_probs=38.5
Q ss_pred CCCCcEEeCCCCcCCcc-CCccCcCCCCCCEEecccCcCcccc-chhhhCCCCCCEEEccCCCCcccCCCchhhHhhhcC
Q 040495 265 LPNLRQLSPNGNNFTGS-IPVSLSNASRLEMIEFSRNQFSGRV-SVDFSRLKNLSFLNMGINNLGTRTANELDFINLLAN 342 (443)
Q Consensus 265 ~~~L~~L~L~~n~l~~~-~~~~l~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~ 342 (443)
+|++..+.+..|.+... -...+...+.+..|+++.+++...- -.++.+++.|+.|.++++.+.......-...-.++.
T Consensus 198 Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaR 277 (418)
T KOG2982|consen 198 FPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIAR 277 (418)
T ss_pred cccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEee
Confidence 45555555555544321 1223334445555555555554321 123455555555555555554433321111122344
Q ss_pred CCCCCEEE
Q 040495 343 CSKLERLY 350 (443)
Q Consensus 343 ~~~L~~L~ 350 (443)
+++++.|+
T Consensus 278 L~~v~vLN 285 (418)
T KOG2982|consen 278 LTKVQVLN 285 (418)
T ss_pred ccceEEec
Confidence 45555544
|
|
| >COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.46 E-value=8.1e-08 Score=83.66 Aligned_cols=88 Identities=18% Similarity=0.233 Sum_probs=56.5
Q ss_pred cCCcCccEeeeeccccCccCCcc----ccCCCCCCEEEccCCcCCcc-----------cccccCCCCCCEEEcccccCCC
Q 040495 167 GSLFKLERLFIFHNHITGQLPAS----IGNLSSLLAFDVRENILWGR-----------IDSLVQLRNLRLLDIAFNHFSG 231 (443)
Q Consensus 167 ~~l~~L~~L~l~~n~l~~~~~~~----l~~l~~L~~L~l~~n~l~~~-----------~~~l~~l~~L~~L~l~~n~~~~ 231 (443)
..+..+..+++++|.+...-..+ +.+-.+|+..+++.-..... .+.+.++|+++..++|.|.|..
T Consensus 27 ~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~ 106 (388)
T COG5238 27 EMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGS 106 (388)
T ss_pred HhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCc
Confidence 34678889999999887443333 34456777777765422111 1455677888888888888776
Q ss_pred CCCcc----ccCCCCCcEEEcccCcCc
Q 040495 232 MIPPP----IFNISSLEVISLSENRFT 254 (443)
Q Consensus 232 ~~~~~----l~~l~~L~~L~l~~n~l~ 254 (443)
..|+. +.+-+.|++|.+++|.+-
T Consensus 107 ~~~e~L~d~is~~t~l~HL~l~NnGlG 133 (388)
T COG5238 107 EFPEELGDLISSSTDLVHLKLNNNGLG 133 (388)
T ss_pred ccchHHHHHHhcCCCceeEEeecCCCC
Confidence 66654 345567777777777653
|
|
| >COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.45 E-value=4.7e-08 Score=85.09 Aligned_cols=206 Identities=20% Similarity=0.245 Sum_probs=127.5
Q ss_pred CcEEEEEcCCCCCcccc----cccccCCCCCCEEeCCCCcCCCC-----------CchhhcCCCccCeEEccCCCCCCCC
Q 040495 74 QRVTRLDLRNQSIGGPL----SPYVGNLSFLRYINLANNGFLGE-----------IPPQIGRLNMLEGLVLSNNSFSGTI 138 (443)
Q Consensus 74 ~~v~~L~l~~~~~~~~~----~~~~~~l~~L~~L~L~~n~~~~~-----------~~~~l~~l~~L~~L~l~~n~~~~~~ 138 (443)
..++.++||+|.+...- ...+++-.+|+..+++.- ++|. +..++.+|++|+..++++|.|....
T Consensus 30 d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~-ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~ 108 (388)
T COG5238 30 DELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDA-FTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF 108 (388)
T ss_pred cceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhh-hhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence 46889999999886543 334566778888888764 3432 2345678899999999999998777
Q ss_pred Chhh----hcCCCCceeeccCCcccccCCc-------------cccCCcCccEeeeeccccCccCCc----cccCCCCCC
Q 040495 139 PTNL----SRRSNLIELSVDTNYLVGEIPS-------------AIGSLFKLERLFIFHNHITGQLPA----SIGNLSSLL 197 (443)
Q Consensus 139 p~~l----~~l~~L~~L~l~~n~l~~~~p~-------------~l~~l~~L~~L~l~~n~l~~~~~~----~l~~l~~L~ 197 (443)
|+.+ +.-+.|++|.+++|.+....-. ...+-|.|+.+..+.|++-..... .+..-..|+
T Consensus 109 ~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk 188 (388)
T COG5238 109 PEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLK 188 (388)
T ss_pred chHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCce
Confidence 7654 4567899999988876421111 123456788888888776522111 122234677
Q ss_pred EEEccCCcCCccc------ccccCCCCCCEEEcccccCCCCC----CccccCCCCCcEEEcccCcCcccCChhhh-----
Q 040495 198 AFDVRENILWGRI------DSLVQLRNLRLLDIAFNHFSGMI----PPPIFNISSLEVISLSENRFTGSLPVDAG----- 262 (443)
Q Consensus 198 ~L~l~~n~l~~~~------~~l~~l~~L~~L~l~~n~~~~~~----~~~l~~l~~L~~L~l~~n~l~~~~~~~~~----- 262 (443)
.+.+..|.+.... ..+..+.+|+.||+..|.++-.- ...+..|+.|++|.+.+|-++..-...++
T Consensus 189 ~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e 268 (388)
T COG5238 189 EVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNE 268 (388)
T ss_pred eEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhh
Confidence 7777777665331 33455677777777777765322 22344566677777777766533322221
Q ss_pred cCCCCCcEEeCCCCcCCc
Q 040495 263 VNLPNLRQLSPNGNNFTG 280 (443)
Q Consensus 263 ~~~~~L~~L~L~~n~l~~ 280 (443)
...|+|..|...+|-..+
T Consensus 269 ~~~p~l~~L~~~Yne~~~ 286 (388)
T COG5238 269 KFVPNLMPLPGDYNERRG 286 (388)
T ss_pred hcCCCccccccchhhhcC
Confidence 124666666666665443
|
|
| >KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.39 E-value=6.9e-09 Score=101.59 Aligned_cols=126 Identities=22% Similarity=0.390 Sum_probs=56.1
Q ss_pred CCCEEEcccccCCCCCCccccCCCCCcEEEcccCcCcccCChhhhcCCCCCcEEeCCCCcCCccCCcc-CcCCCCCCEEe
Q 040495 218 NLRLLDIAFNHFSGMIPPPIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVS-LSNASRLEMIE 296 (443)
Q Consensus 218 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~-l~~~~~L~~L~ 296 (443)
.|...+.++|.+. .+..++.-++.|+.|+|+.|+++ ... .+. .++.|++|++++|.+. .+|.. ...| +|+.|.
T Consensus 165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~-~v~-~Lr-~l~~LkhLDlsyN~L~-~vp~l~~~gc-~L~~L~ 238 (1096)
T KOG1859|consen 165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFT-KVD-NLR-RLPKLKHLDLSYNCLR-HVPQLSMVGC-KLQLLN 238 (1096)
T ss_pred hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhh-hhH-HHH-hcccccccccccchhc-cccccchhhh-hheeee
Confidence 3444444555443 22233444455555555555554 221 222 3555555555555554 22321 1222 255555
Q ss_pred cccCcCccccchhhhCCCCCCEEEccCCCCcccCCCchhhHhhhcCCCCCCEEEccCCcC
Q 040495 297 FSRNQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRF 356 (443)
Q Consensus 297 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l 356 (443)
+++|.++.. ..+.++.+|+-||+++|-+.+... ...+..+..|+.|+|.+|++
T Consensus 239 lrnN~l~tL--~gie~LksL~~LDlsyNll~~hse-----L~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 239 LRNNALTTL--RGIENLKSLYGLDLSYNLLSEHSE-----LEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred ecccHHHhh--hhHHhhhhhhccchhHhhhhcchh-----hhHHHHHHHHHHHhhcCCcc
Confidence 555555421 123455555555555554443221 01233344455555555544
|
|
| >KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.33 E-value=6.2e-08 Score=75.67 Aligned_cols=136 Identities=16% Similarity=0.187 Sum_probs=89.0
Q ss_pred CCEEecccCcCccccch---hhhCCCCCCEEEccCCCCcccCCCchhhHhhhcCCCCCCEEEccCCcCcccCChhHhhhc
Q 040495 292 LEMIEFSRNQFSGRVSV---DFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFS 368 (443)
Q Consensus 292 L~~L~l~~n~l~~~~~~---~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~ 368 (443)
+..++++.|++.. ++. .+.....|...++++|.+....+ +.....+.++.|++++|.++ .+|..+..+
T Consensus 29 ~h~ldLssc~lm~-i~davy~l~~~~el~~i~ls~N~fk~fp~------kft~kf~t~t~lNl~~neis-dvPeE~Aam- 99 (177)
T KOG4579|consen 29 LHFLDLSSCQLMY-IADAVYMLSKGYELTKISLSDNGFKKFPK------KFTIKFPTATTLNLANNEIS-DVPEELAAM- 99 (177)
T ss_pred hhhcccccchhhH-HHHHHHHHhCCceEEEEecccchhhhCCH------HHhhccchhhhhhcchhhhh-hchHHHhhh-
Confidence 4445555555431 222 23444556666777777666554 44455567888888888888 778877764
Q ss_pred cCCCEEeccCCcCeecCchhhhcCCCCCeEeCcCCcCcccCchhhcCCCCCCEEEccCCcCcccCCcccc
Q 040495 369 STIKQIAMGRNRISGTIPPGIRSHANLNWLTMDSNLFTGTIPPVIGELKNLQLLDLGGNFLQGSIPSSLG 438 (443)
Q Consensus 369 ~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~ 438 (443)
+.|+.|+++.|++. ..|+.+..+.++..|+..+|.+. .+|-.+-.-...-..++.++.+.+.-|..+.
T Consensus 100 ~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl~~s~~~al~~lgnepl~~~~~~klq 167 (177)
T KOG4579|consen 100 PALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDLFYSSLPALIKLGNEPLGDETKKKLQ 167 (177)
T ss_pred HHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHHhccccHHHHHhcCCcccccCccccc
Confidence 78888888888888 66777777888888888888776 4554444334444556677777776665443
|
|
| >KOG2982 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.29 E-value=3.5e-07 Score=80.80 Aligned_cols=213 Identities=17% Similarity=0.129 Sum_probs=128.2
Q ss_pred cCCCCceeeccCCcccccC-Cccc-cCCcCccEeeeeccccCc--cCCccccCCCCCCEEEccCCcCCcccccc-cCCCC
Q 040495 144 RRSNLIELSVDTNYLVGEI-PSAI-GSLFKLERLFIFHNHITG--QLPASIGNLSSLLAFDVRENILWGRIDSL-VQLRN 218 (443)
Q Consensus 144 ~l~~L~~L~l~~n~l~~~~-p~~l-~~l~~L~~L~l~~n~l~~--~~~~~l~~l~~L~~L~l~~n~l~~~~~~l-~~l~~ 218 (443)
....++.+.+.++.+...- ...+ ..++.++++++.+|.++. .+...+.+++.|+.|+++.|.+...+..+ ....+
T Consensus 43 s~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~n 122 (418)
T KOG2982|consen 43 SLRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKN 122 (418)
T ss_pred cccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccc
Confidence 3344555555555543111 1112 235678888888888763 23344567888888888888887777554 46778
Q ss_pred CCEEEcccccCCCC-CCccccCCCCCcEEEcccCcCcccCCh--hhhcCCCCCcEEeCCCCcCCc--cCCccCcCCCCCC
Q 040495 219 LRLLDIAFNHFSGM-IPPPIFNISSLEVISLSENRFTGSLPV--DAGVNLPNLRQLSPNGNNFTG--SIPVSLSNASRLE 293 (443)
Q Consensus 219 L~~L~l~~n~~~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~~--~~~~~~~~L~~L~L~~n~l~~--~~~~~l~~~~~L~ 293 (443)
|+.+-+.+..+.-. ....+..++.+++|+++.|++.....+ .+-.-.+.++++.+..|.... .+...-.-++++.
T Consensus 123 l~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~ 202 (418)
T KOG2982|consen 123 LRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVN 202 (418)
T ss_pred eEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccch
Confidence 88888877766532 223455677778888877754311110 000012345555555543320 1111123356778
Q ss_pred EEecccCcCccccc-hhhhCCCCCCEEEccCCCCcccCCCchhhHhhhcCCCCCCEEEccCCcCcccCC
Q 040495 294 MIEFSRNQFSGRVS-VDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLP 361 (443)
Q Consensus 294 ~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p 361 (443)
.+.+..|.+..... ..+..++.+..|+++.|++.... ....+.++++|..|.++++++.+.+.
T Consensus 203 sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswa-----svD~Ln~f~~l~dlRv~~~Pl~d~l~ 266 (418)
T KOG2982|consen 203 SVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWA-----SVDALNGFPQLVDLRVSENPLSDPLR 266 (418)
T ss_pred heeeecCcccchhhcccCCCCCcchhhhhcccccccHH-----HHHHHcCCchhheeeccCCccccccc
Confidence 88888887764332 23556777778888888876543 34678888999999999998875544
|
|
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
Probab=98.06 E-value=3.8e-06 Score=53.02 Aligned_cols=36 Identities=36% Similarity=0.594 Sum_probs=19.1
Q ss_pred CCCeEeCcCCcCcccCchhhcCCCCCCEEEccCCcCc
Q 040495 394 NLNWLTMDSNLFTGTIPPVIGELKNLQLLDLGGNFLQ 430 (443)
Q Consensus 394 ~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~ 430 (443)
+|++|++++|+|+ .+|..+.++++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 4555555555555 45545555555555555555555
|
... |
| >KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.03 E-value=1.1e-05 Score=67.72 Aligned_cols=104 Identities=21% Similarity=0.285 Sum_probs=63.5
Q ss_pred CCCEEEccCCCCcccCCCchhhHhhhcCCCCCCEEEccCCcCcccCChhHhhhccCCCEEeccCCcCeecC-chhhhcCC
Q 040495 315 NLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNRISGTI-PPGIRSHA 393 (443)
Q Consensus 315 ~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~-p~~l~~~~ 393 (443)
....+|+++|.+..... |..++.|..|.+.+|+|+ .|.+.+..+.++|+.|.|.+|.+.... -..+..++
T Consensus 43 ~~d~iDLtdNdl~~l~~--------lp~l~rL~tLll~nNrIt-~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p 113 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLDN--------LPHLPRLHTLLLNNNRIT-RIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCP 113 (233)
T ss_pred ccceecccccchhhccc--------CCCccccceEEecCCcce-eeccchhhhccccceEEecCcchhhhhhcchhccCC
Confidence 34556666666555433 566677777777777777 444455555567777777777665221 12356677
Q ss_pred CCCeEeCcCCcCcccCc---hhhcCCCCCCEEEccCC
Q 040495 394 NLNWLTMDSNLFTGTIP---PVIGELKNLQLLDLGGN 427 (443)
Q Consensus 394 ~L~~L~L~~n~~~~~~p---~~~~~l~~L~~L~l~~n 427 (443)
+|++|.+-+|+.+..-- -.+..+++|+.||.++=
T Consensus 114 ~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 114 KLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred ccceeeecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 77777777777762211 13556777777777653
|
|
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
Probab=97.94 E-value=9e-06 Score=51.34 Aligned_cols=36 Identities=22% Similarity=0.556 Sum_probs=22.9
Q ss_pred CCCEEeccCCcCeecCchhhhcCCCCCeEeCcCCcCc
Q 040495 370 TIKQIAMGRNRISGTIPPGIRSHANLNWLTMDSNLFT 406 (443)
Q Consensus 370 ~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~n~~~ 406 (443)
+|++|++++|+++ .+|..++++++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 5666667777666 45555677777777777777666
|
... |
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Probab=97.93 E-value=5.5e-05 Score=71.76 Aligned_cols=137 Identities=16% Similarity=0.204 Sum_probs=89.6
Q ss_pred ccCCCCCcEEEcccCcCcccCChhhhcCCCCCcEEeCCCCcCCccCCccCcCCCCCCEEecccC-cCccccchhhhCCCC
Q 040495 237 IFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRN-QFSGRVSVDFSRLKN 315 (443)
Q Consensus 237 l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~ 315 (443)
+..+.+++.|++++|.++ .+|. -.++|++|.++++.--..+|..+ .++|+.|++++| .+. .+| +.
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP~----LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~-sLP------~s 113 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLPV----LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS-GLP------ES 113 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccCC----CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc-ccc------cc
Confidence 344688999999999887 7772 35679999998864333666554 368999999998 443 344 35
Q ss_pred CCEEEccCCCCcccCCCchhhHhhhcCC-CCCCEEEccCCcCc--ccCChhHhhhccCCCEEeccCCcCeecCchhhhcC
Q 040495 316 LSFLNMGINNLGTRTANELDFINLLANC-SKLERLYFNRNRFQ--GVLPQSMANFSSTIKQIAMGRNRISGTIPPGIRSH 392 (443)
Q Consensus 316 L~~L~l~~n~l~~~~~~~~~~~~~~~~~-~~L~~L~l~~n~l~--~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~~ 392 (443)
|+.|++..+..... ..+ ++|+.|.+.+++.. ..+|. .++++|+.|++++|... ..|..+-
T Consensus 114 Le~L~L~~n~~~~L-----------~~LPssLk~L~I~~~n~~~~~~lp~---~LPsSLk~L~Is~c~~i-~LP~~LP-- 176 (426)
T PRK15386 114 VRSLEIKGSATDSI-----------KNVPNGLTSLSINSYNPENQARIDN---LISPSLKTLSLTGCSNI-ILPEKLP-- 176 (426)
T ss_pred cceEEeCCCCCccc-----------ccCcchHhheecccccccccccccc---ccCCcccEEEecCCCcc-cCccccc--
Confidence 77788776554321 111 46778887543311 11221 24578999999998865 3454333
Q ss_pred CCCCeEeCcCCc
Q 040495 393 ANLNWLTMDSNL 404 (443)
Q Consensus 393 ~~L~~L~L~~n~ 404 (443)
.+|+.|+++.+.
T Consensus 177 ~SLk~L~ls~n~ 188 (426)
T PRK15386 177 ESLQSITLHIEQ 188 (426)
T ss_pred ccCcEEEecccc
Confidence 578899988763
|
|
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Probab=97.93 E-value=2.7e-05 Score=73.81 Aligned_cols=138 Identities=16% Similarity=0.222 Sum_probs=89.4
Q ss_pred ccCCCCCCEEEcccccCCCCCCccccCCCCCcEEEcccCcCcccCChhhhcCCCCCcEEeCCCC-cCCccCCccCcCCCC
Q 040495 213 LVQLRNLRLLDIAFNHFSGMIPPPIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGN-NFTGSIPVSLSNASR 291 (443)
Q Consensus 213 l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~~~ 291 (443)
+..+.+++.|++++|.+. .+|. -..+|++|.++++.--..+|..+ .++|++|++++| .+. .+|. .
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~L---P~nLe~L~Ls~Cs~L~-sLP~------s 113 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSI---PEGLEKLTVCHCPEIS-GLPE------S 113 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchh---hhhhhheEccCccccc-cccc------c
Confidence 445689999999999776 4452 23469999999864434677543 468999999998 554 4553 5
Q ss_pred CCEEecccCcCccccchhhhCC-CCCCEEEccCCC-CcccCCCchhhHhhhcCCCCCCEEEccCCcCcccCChhHhhhcc
Q 040495 292 LEMIEFSRNQFSGRVSVDFSRL-KNLSFLNMGINN-LGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFSS 369 (443)
Q Consensus 292 L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~-l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~ 369 (443)
|+.|++..+.... +..+ ++|+.|.+..++ ....... .. -.++|++|++++|... ..|..+ +.
T Consensus 114 Le~L~L~~n~~~~-----L~~LPssLk~L~I~~~n~~~~~~lp-----~~--LPsSLk~L~Is~c~~i-~LP~~L---P~ 177 (426)
T PRK15386 114 VRSLEIKGSATDS-----IKNVPNGLTSLSINSYNPENQARID-----NL--ISPSLKTLSLTGCSNI-ILPEKL---PE 177 (426)
T ss_pred cceEEeCCCCCcc-----cccCcchHhheeccccccccccccc-----cc--cCCcccEEEecCCCcc-cCcccc---cc
Confidence 7788887665431 2233 246777775432 1111000 00 1268999999999866 455433 46
Q ss_pred CCCEEeccCCc
Q 040495 370 TIKQIAMGRNR 380 (443)
Q Consensus 370 ~L~~L~L~~n~ 380 (443)
+|+.|+++.+.
T Consensus 178 SLk~L~ls~n~ 188 (426)
T PRK15386 178 SLQSITLHIEQ 188 (426)
T ss_pred cCcEEEecccc
Confidence 89999998774
|
|
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.85 E-value=6.2e-06 Score=84.48 Aligned_cols=94 Identities=19% Similarity=0.278 Sum_probs=39.6
Q ss_pred CCCCCcEEeCCCCcCCccCCccCcCCCCCCEEecccCcCcc-ccchhhhCCCCCCEEEccCCCCcccCCCchhhHhhhcC
Q 040495 264 NLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSG-RVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLAN 342 (443)
Q Consensus 264 ~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~ 342 (443)
++|+|..||+++.+++.. ..++.+++|++|.+.+=.+.. ..-..+-.+++|+.||+|.............+...-..
T Consensus 171 sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~ 248 (699)
T KOG3665|consen 171 SFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMV 248 (699)
T ss_pred ccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhccc
Confidence 444555555555444421 334444455555444433332 11112344555555555544333322111112222233
Q ss_pred CCCCCEEEccCCcCccc
Q 040495 343 CSKLERLYFNRNRFQGV 359 (443)
Q Consensus 343 ~~~L~~L~l~~n~l~~~ 359 (443)
+|+|+.||.+++.+.+.
T Consensus 249 LpeLrfLDcSgTdi~~~ 265 (699)
T KOG3665|consen 249 LPELRFLDCSGTDINEE 265 (699)
T ss_pred CccccEEecCCcchhHH
Confidence 45555555555554433
|
|
| >KOG4341 consensus F-box protein containing LRR [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.67 E-value=1.9e-06 Score=79.76 Aligned_cols=300 Identities=14% Similarity=0.095 Sum_probs=148.1
Q ss_pred CCCEEeCCCCcCCCC--CchhhcCCCccCeEEccCCC-CCCCCChhh-hcCCCCceeeccCCc-ccccCCc-cccCCcCc
Q 040495 99 FLRYINLANNGFLGE--IPPQIGRLNMLEGLVLSNNS-FSGTIPTNL-SRRSNLIELSVDTNY-LVGEIPS-AIGSLFKL 172 (443)
Q Consensus 99 ~L~~L~L~~n~~~~~--~~~~l~~l~~L~~L~l~~n~-~~~~~p~~l-~~l~~L~~L~l~~n~-l~~~~p~-~l~~l~~L 172 (443)
.|+.|.++++.-.+. +-....+++++++|.+.++. +++..-..+ ..+++|+++++..|. ++...-. -...+++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 466666666643322 22223456677777666653 222222222 245667777766633 2211111 22356777
Q ss_pred cEeeeeccc-cCcc-CCccccCCCCCCEEEccCCcCCccc---ccccCCCCCCEEEcccc-cCCCCCCcc-ccCCCCCcE
Q 040495 173 ERLFIFHNH-ITGQ-LPASIGNLSSLLAFDVRENILWGRI---DSLVQLRNLRLLDIAFN-HFSGMIPPP-IFNISSLEV 245 (443)
Q Consensus 173 ~~L~l~~n~-l~~~-~~~~l~~l~~L~~L~l~~n~l~~~~---~~l~~l~~L~~L~l~~n-~~~~~~~~~-l~~l~~L~~ 245 (443)
++++++.+. +++. +-....++..++.+.+.||.-.+.. ..-+....+.++++..+ ++++...-. -..+..|+.
T Consensus 219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~ 298 (483)
T KOG4341|consen 219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQV 298 (483)
T ss_pred HHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhh
Confidence 777777663 2321 1112334555555555554222111 11123344555554443 222221101 113456777
Q ss_pred EEcccCcC-cccCChhhhcCCCCCcEEeCCCCc-CCccCCccC-cCCCCCCEEecccCcCccc--cchhhhCCCCCCEEE
Q 040495 246 ISLSENRF-TGSLPVDAGVNLPNLRQLSPNGNN-FTGSIPVSL-SNASRLEMIEFSRNQFSGR--VSVDFSRLKNLSFLN 320 (443)
Q Consensus 246 L~l~~n~l-~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l-~~~~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~ 320 (443)
+..+++.. +...-..++.+..+|+.+.+..++ |+..--..+ .+++.|+.+++.++..... +-..-.+++.|+.+.
T Consensus 299 l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~ls 378 (483)
T KOG4341|consen 299 LCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLS 378 (483)
T ss_pred hcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCC
Confidence 77766633 323334455567788888887774 332211122 3567788888777654321 111224577788888
Q ss_pred ccCCCCcccC-CCchhhHhhhcCCCCCCEEEccCCcCcccCChhHhhhccCCCEEeccCCc-Ceec-CchhhhcCCCCCe
Q 040495 321 MGINNLGTRT-ANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNR-ISGT-IPPGIRSHANLNW 397 (443)
Q Consensus 321 l~~n~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~-l~~~-~p~~l~~~~~L~~ 397 (443)
++.+..-.+. ... +...-.....|+.+.+++++..-.-.-.....+++|+.+++.+++ ++.+ +...-..+++++.
T Consensus 379 lshce~itD~gi~~--l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v 456 (483)
T KOG4341|consen 379 LSHCELITDEGIRH--LSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLPNIKV 456 (483)
T ss_pred hhhhhhhhhhhhhh--hhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCcccee
Confidence 8766433222 100 002234567788888888875422111222235788888888876 3222 3333456666665
Q ss_pred EeC
Q 040495 398 LTM 400 (443)
Q Consensus 398 L~L 400 (443)
.-+
T Consensus 457 ~a~ 459 (483)
T KOG4341|consen 457 HAY 459 (483)
T ss_pred hhh
Confidence 443
|
|
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.66 E-value=2.9e-05 Score=79.66 Aligned_cols=136 Identities=23% Similarity=0.314 Sum_probs=87.3
Q ss_pred CCcEEEcccCc-CcccCChhhhcCCCCCcEEeCCCCcCCc-cCCccCcCCCCCCEEecccCcCccccchhhhCCCCCCEE
Q 040495 242 SLEVISLSENR-FTGSLPVDAGVNLPNLRQLSPNGNNFTG-SIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFL 319 (443)
Q Consensus 242 ~L~~L~l~~n~-l~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 319 (443)
+|++|++++.. +...-|..++..+|+|++|.+.+-.+.. .+-....++++|..||+++.+++.. ..++++++|+.|
T Consensus 123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L 200 (699)
T KOG3665|consen 123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVL 200 (699)
T ss_pred hhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHH
Confidence 45555555542 2234456667778999999988876642 2344556788999999999888854 557888888888
Q ss_pred EccCCCCcccCCCchhhHhhhcCCCCCCEEEccCCcCcccCChhHhh------hccCCCEEeccCCcCeecC
Q 040495 320 NMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQSMAN------FSSTIKQIAMGRNRISGTI 385 (443)
Q Consensus 320 ~l~~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~------~~~~L~~L~L~~n~l~~~~ 385 (443)
.+.+-.+.... -...+..+++|+.||+|..+... .+..+.. ..|.|+.||.|+..+.+.+
T Consensus 201 ~mrnLe~e~~~-----~l~~LF~L~~L~vLDIS~~~~~~-~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~ 266 (699)
T KOG3665|consen 201 SMRNLEFESYQ-----DLIDLFNLKKLRVLDISRDKNND-DTKIIEQYLECGMVLPELRFLDCSGTDINEEI 266 (699)
T ss_pred hccCCCCCchh-----hHHHHhcccCCCeeecccccccc-chHHHHHHHHhcccCccccEEecCCcchhHHH
Confidence 88766554321 11456778888888888776552 2221111 1356777777766666543
|
|
| >KOG4341 consensus F-box protein containing LRR [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.62 E-value=2.7e-06 Score=78.73 Aligned_cols=82 Identities=17% Similarity=0.050 Sum_probs=37.3
Q ss_pred ccCeEEccCCCCCCC--CChhhhcCCCCceeeccCCcc-cccCCccc-cCCcCccEeeeecc-ccCccCCcc-ccCCCCC
Q 040495 123 MLEGLVLSNNSFSGT--IPTNLSRRSNLIELSVDTNYL-VGEIPSAI-GSLFKLERLFIFHN-HITGQLPAS-IGNLSSL 196 (443)
Q Consensus 123 ~L~~L~l~~n~~~~~--~p~~l~~l~~L~~L~l~~n~l-~~~~p~~l-~~l~~L~~L~l~~n-~l~~~~~~~-l~~l~~L 196 (443)
.|+.|.+.++.-.+. +-..-.+++++++|.+.++.. +...-..+ ..+++|+++++..+ .++...-.. -..+++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 466667766643322 122234566666666665542 11111111 34556666666552 233222221 1245555
Q ss_pred CEEEccCC
Q 040495 197 LAFDVREN 204 (443)
Q Consensus 197 ~~L~l~~n 204 (443)
++++++.+
T Consensus 219 ~~lNlSwc 226 (483)
T KOG4341|consen 219 KYLNLSWC 226 (483)
T ss_pred HHhhhccC
Confidence 56655555
|
|
| >KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00012 Score=61.52 Aligned_cols=82 Identities=21% Similarity=0.193 Sum_probs=34.2
Q ss_pred CcCccEeeeeccccCccCCccccCCCCCCEEEccCCcCCccc--ccccCCCCCCEEEcccccCCCCC---CccccCCCCC
Q 040495 169 LFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRI--DSLVQLRNLRLLDIAFNHFSGMI---PPPIFNISSL 243 (443)
Q Consensus 169 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~--~~l~~l~~L~~L~l~~n~~~~~~---~~~l~~l~~L 243 (443)
++.|.+|.+++|.++..-|.--.-+++|..|.+.+|.+.... ..+..+|+|++|.+-+|+.+..- -..+..+++|
T Consensus 63 l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l 142 (233)
T KOG1644|consen 63 LPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSL 142 (233)
T ss_pred ccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcc
Confidence 344444444444444222222222333444444444433222 44455555555555555544221 1123344555
Q ss_pred cEEEccc
Q 040495 244 EVISLSE 250 (443)
Q Consensus 244 ~~L~l~~ 250 (443)
+.||+++
T Consensus 143 ~~LDF~k 149 (233)
T KOG1644|consen 143 RTLDFQK 149 (233)
T ss_pred eEeehhh
Confidence 5555443
|
|
| >PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0012 Score=52.82 Aligned_cols=60 Identities=30% Similarity=0.396 Sum_probs=20.9
Q ss_pred CcCCCCCCEEecccCcCccccchhhhCCCCCCEEEccCCCCcccCCCchhhHhhhcCCCCCCEEEccC
Q 040495 286 LSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNR 353 (443)
Q Consensus 286 l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 353 (443)
|.++++|+.+.+.. .+.......|..+++|+.+.+..+ +..... ..+.++++++.+.+.+
T Consensus 8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~------~~F~~~~~l~~i~~~~ 67 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGD------NAFSNCKSLESITFPN 67 (129)
T ss_dssp TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-T------TTTTT-TT-EEEEETS
T ss_pred HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccce------eeeecccccccccccc
Confidence 44444455555442 233333334444444555554432 222222 3344454555555543
|
|
| >PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.00094 Score=53.53 Aligned_cols=59 Identities=27% Similarity=0.352 Sum_probs=21.2
Q ss_pred ccCCCCCcEEEcccCcCcccCChhhhcCCCCCcEEeCCCCcCCccCCccCcCCCCCCEEecc
Q 040495 237 IFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFS 298 (443)
Q Consensus 237 l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~ 298 (443)
|.++++|+.+.+.+ .+. .++...+.++++++.+.+..+ +...-...+.++++++.+.+.
T Consensus 8 F~~~~~l~~i~~~~-~~~-~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~ 66 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIK-KIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFP 66 (129)
T ss_dssp TTT-TT--EEEETS-T---EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEET
T ss_pred HhCCCCCCEEEECC-Cee-EeChhhccccccccccccccc-ccccceeeeeccccccccccc
Confidence 44445555555543 233 344444444445555555443 332223334444445555443
|
|
| >KOG2123 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.95 E-value=4.8e-05 Score=66.97 Aligned_cols=89 Identities=22% Similarity=0.285 Sum_probs=51.2
Q ss_pred CCCCcEEeCCCCcCCccCCccCcCCCCCCEEecccCcCccccchhhhCCCCCCEEEccCCCCcccCCCchhhHhhhcCCC
Q 040495 265 LPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCS 344 (443)
Q Consensus 265 ~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~ 344 (443)
+.+.+.|++.++++.+. .....++.|++|.|+-|+|+..-| +..|++|++|+|..|.|.+... ..-+.+++
T Consensus 18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldE-----L~YLknlp 88 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDE-----LEYLKNLP 88 (388)
T ss_pred HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHH-----HHHHhcCc
Confidence 34556666666666532 233456667777777776664433 4566666666666666544321 23455666
Q ss_pred CCCEEEccCCcCcccCCh
Q 040495 345 KLERLYFNRNRFQGVLPQ 362 (443)
Q Consensus 345 ~L~~L~l~~n~l~~~~p~ 362 (443)
+|+.|.|..|+-.|..+.
T Consensus 89 sLr~LWL~ENPCc~~ag~ 106 (388)
T KOG2123|consen 89 SLRTLWLDENPCCGEAGQ 106 (388)
T ss_pred hhhhHhhccCCcccccch
Confidence 666666666665554443
|
|
| >PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.00032 Score=36.86 Aligned_cols=22 Identities=68% Similarity=0.943 Sum_probs=15.4
Q ss_pred CCCEEEccCCcCcccCCccccCC
Q 040495 418 NLQLLDLGGNFLQGSIPSSLGNL 440 (443)
Q Consensus 418 ~L~~L~l~~n~l~~~~p~~~~~l 440 (443)
+|++||+++|+++ .||++|++|
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFSNL 22 (22)
T ss_dssp TESEEEETSSEES-EEGTTTTT-
T ss_pred CccEEECCCCcCE-eCChhhcCC
Confidence 4677888888777 777776654
|
LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A .... |
| >KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.00046 Score=60.53 Aligned_cols=65 Identities=23% Similarity=0.293 Sum_probs=29.8
Q ss_pred ccccCCCCCCEEeCCCCcCCCCCchhhcCCCccCeEEccCC--CCCCCCChhhhcCCCCceeeccCCcc
Q 040495 92 PYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNN--SFSGTIPTNLSRRSNLIELSVDTNYL 158 (443)
Q Consensus 92 ~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n--~~~~~~p~~l~~l~~L~~L~l~~n~l 158 (443)
.....+..|+.|++.+..++. -..+..+++|++|.++.| .+++.++.-...+++|+++++++|++
T Consensus 37 gl~d~~~~le~ls~~n~gltt--~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki 103 (260)
T KOG2739|consen 37 GLTDEFVELELLSVINVGLTT--LTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKI 103 (260)
T ss_pred cccccccchhhhhhhccceee--cccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcc
Confidence 333344455555554444431 112334455555555555 33333333333445555555555554
|
|
| >KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.00069 Score=59.44 Aligned_cols=86 Identities=20% Similarity=0.227 Sum_probs=45.2
Q ss_pred CCCCCcEEeCCCC--cCCccCCccCcCCCCCCEEecccCcCccc-cchhhhCCCCCCEEEccCCCCcccCCCchhhHhhh
Q 040495 264 NLPNLRQLSPNGN--NFTGSIPVSLSNASRLEMIEFSRNQFSGR-VSVDFSRLKNLSFLNMGINNLGTRTANELDFINLL 340 (443)
Q Consensus 264 ~~~~L~~L~L~~n--~l~~~~~~~l~~~~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~ 340 (443)
.+++|+.|.++.| +..+.++.....+++|+++++++|++... .-..+..+.+|..|++.+|..+..... ....|
T Consensus 63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dy---re~vf 139 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDY---REKVF 139 (260)
T ss_pred CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccH---HHHHH
Confidence 3556666666666 44555555555556666666666665521 011134555666666666655442211 11334
Q ss_pred cCCCCCCEEEcc
Q 040495 341 ANCSKLERLYFN 352 (443)
Q Consensus 341 ~~~~~L~~L~l~ 352 (443)
.-+++|++|+-.
T Consensus 140 ~ll~~L~~LD~~ 151 (260)
T KOG2739|consen 140 LLLPSLKYLDGC 151 (260)
T ss_pred HHhhhhcccccc
Confidence 555666666543
|
|
| >KOG2123 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.00031 Score=62.07 Aligned_cols=98 Identities=17% Similarity=0.344 Sum_probs=64.1
Q ss_pred CCCCEEecccCcCccccchhhhCCCCCCEEEccCCCCcccCCCchhhHhhhcCCCCCCEEEccCCcCcccCCh-h-Hhhh
Q 040495 290 SRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQ-S-MANF 367 (443)
Q Consensus 290 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~-~-~~~~ 367 (443)
.+.++|++.++.++++ ....+++.|+.|.|+-|+++...+ +..|.+|++|+|..|.|.+ +.+ . +.+
T Consensus 19 ~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~p--------l~rCtrLkElYLRkN~I~s-ldEL~YLkn- 86 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLAP--------LQRCTRLKELYLRKNCIES-LDELEYLKN- 86 (388)
T ss_pred HHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccchh--------HHHHHHHHHHHHHhccccc-HHHHHHHhc-
Confidence 4566778888887743 224577888888888888877765 7778888888888887762 222 1 222
Q ss_pred ccCCCEEeccCCcCeecCch-----hhhcCCCCCeEe
Q 040495 368 SSTIKQIAMGRNRISGTIPP-----GIRSHANLNWLT 399 (443)
Q Consensus 368 ~~~L~~L~L~~n~l~~~~p~-----~l~~~~~L~~L~ 399 (443)
.|+|+.|-|..|+..|..+. .+..+++|++||
T Consensus 87 lpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 87 LPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred CchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 36667777777776665443 245566666653
|
|
| >KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.00043 Score=69.22 Aligned_cols=60 Identities=27% Similarity=0.319 Sum_probs=24.7
Q ss_pred CCCCEEEccccc-CCCCCCccccC-CCCCcEEEcccCc-CcccCChhhhcCCCCCcEEeCCCC
Q 040495 217 RNLRLLDIAFNH-FSGMIPPPIFN-ISSLEVISLSENR-FTGSLPVDAGVNLPNLRQLSPNGN 276 (443)
Q Consensus 217 ~~L~~L~l~~n~-~~~~~~~~l~~-l~~L~~L~l~~n~-l~~~~~~~~~~~~~~L~~L~L~~n 276 (443)
++|+.++++++. +++..-..++. +++|++|.+.++. ++..--..+...+++|++|+++++
T Consensus 243 ~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c 305 (482)
T KOG1947|consen 243 RKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGC 305 (482)
T ss_pred CCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecC
Confidence 444555554444 32222222221 4445555544443 332222333334445555555544
|
|
| >PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.0059 Score=31.95 Aligned_cols=18 Identities=33% Similarity=0.658 Sum_probs=8.6
Q ss_pred CCeEeCcCCcCcccCchhh
Q 040495 395 LNWLTMDSNLFTGTIPPVI 413 (443)
Q Consensus 395 L~~L~L~~n~~~~~~p~~~ 413 (443)
|++|++++|+++ .+|..+
T Consensus 2 L~~Ldls~n~l~-~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSF 19 (22)
T ss_dssp ESEEEETSSEES-EEGTTT
T ss_pred ccEEECCCCcCE-eCChhh
Confidence 444555555544 444443
|
LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A .... |
| >KOG4308 consensus LRR-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.21 E-value=0.00027 Score=69.49 Aligned_cols=84 Identities=18% Similarity=0.136 Sum_probs=42.4
Q ss_pred CCEEEcccccCCCCCC----ccccCCCCCcEEEcccCcCcccCChhhhc---C-CCCCcEEeCCCCcCCcc----CCccC
Q 040495 219 LRLLDIAFNHFSGMIP----PPIFNISSLEVISLSENRFTGSLPVDAGV---N-LPNLRQLSPNGNNFTGS----IPVSL 286 (443)
Q Consensus 219 L~~L~l~~n~~~~~~~----~~l~~l~~L~~L~l~~n~l~~~~~~~~~~---~-~~~L~~L~L~~n~l~~~----~~~~l 286 (443)
+..+.+.+|.+..... ..+.....|..|++++|.+.+.--..+.. . -..++.|++..|.+++. +...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 6667777777664422 23344566777777777665221111111 1 13345555555555432 22334
Q ss_pred cCCCCCCEEecccCcC
Q 040495 287 SNASRLEMIEFSRNQF 302 (443)
Q Consensus 287 ~~~~~L~~L~l~~n~l 302 (443)
.....++.++++.|.+
T Consensus 169 ~~~~~l~~l~l~~n~l 184 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGL 184 (478)
T ss_pred hcccchhHHHHHhccc
Confidence 4455555666665554
|
|
| >PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D | Back alignment and domain information |
|---|
Probab=94.60 E-value=0.021 Score=27.68 Aligned_cols=13 Identities=54% Similarity=0.669 Sum_probs=6.5
Q ss_pred CCCEEEccCCcCc
Q 040495 418 NLQLLDLGGNFLQ 430 (443)
Q Consensus 418 ~L~~L~l~~n~l~ 430 (443)
+|+.|++++|+++
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 5666666666665
|
... |
| >KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.50 E-value=0.02 Score=57.19 Aligned_cols=134 Identities=17% Similarity=0.195 Sum_probs=78.4
Q ss_pred CCCCCcEEeCCCCc-CCcc-CCccCcCCCCCCEEecccC-cCccccc----hhhhCCCCCCEEEccCCC-CcccCCCchh
Q 040495 264 NLPNLRQLSPNGNN-FTGS-IPVSLSNASRLEMIEFSRN-QFSGRVS----VDFSRLKNLSFLNMGINN-LGTRTANELD 335 (443)
Q Consensus 264 ~~~~L~~L~L~~n~-l~~~-~~~~l~~~~~L~~L~l~~n-~l~~~~~----~~~~~l~~L~~L~l~~n~-l~~~~~~~~~ 335 (443)
..+.|+.+.+..+. ++.. .-.....++.|+.|+++++ ......+ .....+++|+.++++... +++...
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l---- 261 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGL---- 261 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhH----
Confidence 46788888888773 3321 3344566788888888873 2211111 223456778888888766 333222
Q ss_pred hHhhhcCCCCCCEEEccCCc-CcccCChhHhhhccCCCEEeccCCcCe-ec-CchhhhcCCCCCeEeCcC
Q 040495 336 FINLLANCSKLERLYFNRNR-FQGVLPQSMANFSSTIKQIAMGRNRIS-GT-IPPGIRSHANLNWLTMDS 402 (443)
Q Consensus 336 ~~~~~~~~~~L~~L~l~~n~-l~~~~p~~~~~~~~~L~~L~L~~n~l~-~~-~p~~l~~~~~L~~L~L~~ 402 (443)
......|++|++|.+.++. +++..-..+...++.|+.|+++.+... +. +.....++++++.+.+..
T Consensus 262 -~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~ 330 (482)
T KOG1947|consen 262 -SALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLS 330 (482)
T ss_pred -HHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhh
Confidence 1222337788888877776 565544555555677888888877643 21 333345566666655433
|
|
| >KOG4308 consensus LRR-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.43 E-value=0.00055 Score=67.38 Aligned_cols=207 Identities=19% Similarity=0.214 Sum_probs=120.6
Q ss_pred CCCCEEEccCCcCCccc-----ccccCCCCCCEEEcccccCCCCCCcc----ccCC-CCCcEEEcccCcCccc----CCh
Q 040495 194 SSLLAFDVRENILWGRI-----DSLVQLRNLRLLDIAFNHFSGMIPPP----IFNI-SSLEVISLSENRFTGS----LPV 259 (443)
Q Consensus 194 ~~L~~L~l~~n~l~~~~-----~~l~~l~~L~~L~l~~n~~~~~~~~~----l~~l-~~L~~L~l~~n~l~~~----~~~ 259 (443)
..+..+.+.+|.+.... ..+...+.|+.|++++|.+.+.-... +... ..++.|++..|.+++. +..
T Consensus 87 ~~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~ 166 (478)
T KOG4308|consen 87 ASLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAA 166 (478)
T ss_pred hhHHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHH
Confidence 34777888888776443 45566789999999999887432221 2222 4567788887877643 334
Q ss_pred hhhcCCCCCcEEeCCCCcCCc----cCCccCc----CCCCCCEEecccCcCccccch----hhhCCCC-CCEEEccCCCC
Q 040495 260 DAGVNLPNLRQLSPNGNNFTG----SIPVSLS----NASRLEMIEFSRNQFSGRVSV----DFSRLKN-LSFLNMGINNL 326 (443)
Q Consensus 260 ~~~~~~~~L~~L~L~~n~l~~----~~~~~l~----~~~~L~~L~l~~n~l~~~~~~----~~~~l~~-L~~L~l~~n~l 326 (443)
.+. ....++.++++.|.+.. .++..+. ...++++|++.+|.++..... .+...+. +..+++..|.+
T Consensus 167 ~L~-~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l 245 (478)
T KOG4308|consen 167 VLE-KNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKL 245 (478)
T ss_pred HHh-cccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCc
Confidence 444 47788889999887731 1222233 356778888888877632211 2334444 66677777777
Q ss_pred cccCCCchhhHhhhcCC-CCCCEEEccCCcCcccCChhHhhh---ccCCCEEeccCCcCeecCc----hhhhcCCCCCeE
Q 040495 327 GTRTANELDFINLLANC-SKLERLYFNRNRFQGVLPQSMANF---SSTIKQIAMGRNRISGTIP----PGIRSHANLNWL 398 (443)
Q Consensus 327 ~~~~~~~~~~~~~~~~~-~~L~~L~l~~n~l~~~~p~~~~~~---~~~L~~L~L~~n~l~~~~p----~~l~~~~~L~~L 398 (443)
.+..... ....+..+ ..++.++++.|.+++.....+... ++.++.+.+++|.+.+..- ..+.....+..+
T Consensus 246 ~d~g~~~--L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~~~~~~~~~l~~~~~~~~~ 323 (478)
T KOG4308|consen 246 GDVGVEK--LLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDYGVELLLEALERKTPLLHL 323 (478)
T ss_pred chHHHHH--HHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccHHHHHHHHHhhhcccchhh
Confidence 6552211 11334444 566777777777775555443321 3466777777777665422 122333444455
Q ss_pred eCcCC
Q 040495 399 TMDSN 403 (443)
Q Consensus 399 ~L~~n 403 (443)
.+.++
T Consensus 324 ~l~~~ 328 (478)
T KOG4308|consen 324 VLGGT 328 (478)
T ss_pred hcccc
Confidence 55543
|
|
| >KOG0473 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.91 E-value=0.0047 Score=53.34 Aligned_cols=88 Identities=11% Similarity=0.131 Sum_probs=62.1
Q ss_pred hhcCCCCCCEEEccCCcCcccCChhHhhhccCCCEEeccCCcCeecCchhhhcCCCCCeEeCcCCcCcccCchhhcCCCC
Q 040495 339 LLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNRISGTIPPGIRSHANLNWLTMDSNLFTGTIPPVIGELKN 418 (443)
Q Consensus 339 ~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~n~~~~~~p~~~~~l~~ 418 (443)
.+......+.||++.|++. ..-..+.. .+.+..+|++.|++. ..|..++....++.+++.+|..+ ..|.++...+.
T Consensus 37 ei~~~kr~tvld~~s~r~v-n~~~n~s~-~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~ 112 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLV-NLGKNFSI-LTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPH 112 (326)
T ss_pred hhhccceeeeehhhhhHHH-hhccchHH-HHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCC
Confidence 3445566777777777665 22222333 256777888888777 67777777777788888877777 77888888888
Q ss_pred CCEEEccCCcCc
Q 040495 419 LQLLDLGGNFLQ 430 (443)
Q Consensus 419 L~~L~l~~n~l~ 430 (443)
++++++.+|.|.
T Consensus 113 ~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 113 PKKNEQKKTEFF 124 (326)
T ss_pred cchhhhccCcch
Confidence 888888888766
|
|
| >KOG3864 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.76 E-value=0.029 Score=47.55 Aligned_cols=36 Identities=11% Similarity=0.116 Sum_probs=23.6
Q ss_pred ccCCCEEeccCCc-CeecCchhhhcCCCCCeEeCcCC
Q 040495 368 SSTIKQIAMGRNR-ISGTIPPGIRSHANLNWLTMDSN 403 (443)
Q Consensus 368 ~~~L~~L~L~~n~-l~~~~p~~l~~~~~L~~L~L~~n 403 (443)
.++|+.|+|++|. ||+..-.++..+++|+.|.+.+=
T Consensus 150 ~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l 186 (221)
T KOG3864|consen 150 APSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDL 186 (221)
T ss_pred ccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCc
Confidence 4667777777664 66555566677777777777653
|
|
| >KOG0473 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.40 E-value=0.0054 Score=52.99 Aligned_cols=85 Identities=13% Similarity=0.179 Sum_probs=40.8
Q ss_pred ccCCCCCCEEeCCCCcCCCCCchhhcCCCccCeEEccCCCCCCCCChhhhcCCCCceeeccCCcccccCCccccCCcCcc
Q 040495 94 VGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSVDTNYLVGEIPSAIGSLFKLE 173 (443)
Q Consensus 94 ~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~ 173 (443)
+..+...+.||++.|.+. .+...++-++.+..|+++.|.+. ..|.++++...++.++...|..+ ..|.+++..+.++
T Consensus 38 i~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k 114 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPK 114 (326)
T ss_pred hhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcc
Confidence 334444444444444433 23333444445555555555544 44555555555555555444444 4455555555555
Q ss_pred Eeeeeccc
Q 040495 174 RLFIFHNH 181 (443)
Q Consensus 174 ~L~l~~n~ 181 (443)
+++.-.|.
T Consensus 115 ~~e~k~~~ 122 (326)
T KOG0473|consen 115 KNEQKKTE 122 (326)
T ss_pred hhhhccCc
Confidence 55554444
|
|
| >smart00370 LRR Leucine-rich repeats, outliers | Back alignment and domain information |
|---|
Probab=91.09 E-value=0.19 Score=27.26 Aligned_cols=19 Identities=47% Similarity=0.670 Sum_probs=11.8
Q ss_pred CCCCEEEccCCcCcccCCcc
Q 040495 417 KNLQLLDLGGNFLQGSIPSS 436 (443)
Q Consensus 417 ~~L~~L~l~~n~l~~~~p~~ 436 (443)
++|++|++++|++. .+|+.
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~ 20 (26)
T smart00370 2 PNLRELDLSNNQLS-SLPPG 20 (26)
T ss_pred CCCCEEECCCCcCC-cCCHH
Confidence 45666777777666 55543
|
|
| >smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily | Back alignment and domain information |
|---|
Probab=91.09 E-value=0.19 Score=27.26 Aligned_cols=19 Identities=47% Similarity=0.670 Sum_probs=11.8
Q ss_pred CCCCEEEccCCcCcccCCcc
Q 040495 417 KNLQLLDLGGNFLQGSIPSS 436 (443)
Q Consensus 417 ~~L~~L~l~~n~l~~~~p~~ 436 (443)
++|++|++++|++. .+|+.
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~ 20 (26)
T smart00369 2 PNLRELDLSNNQLS-SLPPG 20 (26)
T ss_pred CCCCEEECCCCcCC-cCCHH
Confidence 45666777777666 55543
|
|
| >smart00370 LRR Leucine-rich repeats, outliers | Back alignment and domain information |
|---|
Probab=90.82 E-value=0.26 Score=26.73 Aligned_cols=20 Identities=25% Similarity=0.468 Sum_probs=11.3
Q ss_pred CCCCEEEccCCcCcccCChhH
Q 040495 344 SKLERLYFNRNRFQGVLPQSM 364 (443)
Q Consensus 344 ~~L~~L~l~~n~l~~~~p~~~ 364 (443)
++|++|++++|+++ .+|...
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~~ 21 (26)
T smart00370 2 PNLRELDLSNNQLS-SLPPGA 21 (26)
T ss_pred CCCCEEECCCCcCC-cCCHHH
Confidence 45566666666665 455443
|
|
| >smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily | Back alignment and domain information |
|---|
Probab=90.82 E-value=0.26 Score=26.73 Aligned_cols=20 Identities=25% Similarity=0.468 Sum_probs=11.3
Q ss_pred CCCCEEEccCCcCcccCChhH
Q 040495 344 SKLERLYFNRNRFQGVLPQSM 364 (443)
Q Consensus 344 ~~L~~L~l~~n~l~~~~p~~~ 364 (443)
++|++|++++|+++ .+|...
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~~ 21 (26)
T smart00369 2 PNLRELDLSNNQLS-SLPPGA 21 (26)
T ss_pred CCCCEEECCCCcCC-cCCHHH
Confidence 45566666666665 455443
|
|
| >PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A | Back alignment and domain information |
|---|
Probab=90.70 E-value=0.036 Score=29.59 Aligned_cols=16 Identities=38% Similarity=0.530 Sum_probs=6.7
Q ss_pred CCCCEEEccCCcCccc
Q 040495 417 KNLQLLDLGGNFLQGS 432 (443)
Q Consensus 417 ~~L~~L~l~~n~l~~~ 432 (443)
++|++|+|++|+++++
T Consensus 2 ~~L~~L~l~~n~i~~~ 17 (24)
T PF13516_consen 2 PNLETLDLSNNQITDE 17 (24)
T ss_dssp TT-SEEE-TSSBEHHH
T ss_pred CCCCEEEccCCcCCHH
Confidence 3445555555554433
|
... |
| >PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A | Back alignment and domain information |
|---|
Probab=90.26 E-value=0.1 Score=27.75 Aligned_cols=13 Identities=15% Similarity=0.547 Sum_probs=4.6
Q ss_pred CCCEEeccCCcCe
Q 040495 370 TIKQIAMGRNRIS 382 (443)
Q Consensus 370 ~L~~L~L~~n~l~ 382 (443)
+|+.|+|++|+++
T Consensus 3 ~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 3 NLETLDLSNNQIT 15 (24)
T ss_dssp T-SEEE-TSSBEH
T ss_pred CCCEEEccCCcCC
Confidence 3444444444443
|
... |
| >KOG3864 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=86.20 E-value=0.22 Score=42.46 Aligned_cols=80 Identities=20% Similarity=0.171 Sum_probs=45.5
Q ss_pred cEEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCCC-CCchhhc-CCCccCeEEccCC-CCCCCCChhhhcCCCCcee
Q 040495 75 RVTRLDLRNQSIGGPLSPYVGNLSFLRYINLANNGFLG-EIPPQIG-RLNMLEGLVLSNN-SFSGTIPTNLSRRSNLIEL 151 (443)
Q Consensus 75 ~v~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~-~~~~~l~-~l~~L~~L~l~~n-~~~~~~p~~l~~l~~L~~L 151 (443)
.|+.+|-++..+.+.--+.+..++.++.|.+.++.--+ .--+.++ -.++|+.|++++| .|+..--..+..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 47777777777766555566677777777776664322 1111222 2356677777655 4554444445555566655
Q ss_pred ecc
Q 040495 152 SVD 154 (443)
Q Consensus 152 ~l~ 154 (443)
.+.
T Consensus 182 ~l~ 184 (221)
T KOG3864|consen 182 HLY 184 (221)
T ss_pred Hhc
Confidence 554
|
|
| >KOG4242 consensus Predicted myosin-I-binding protein [Cell motility] | Back alignment and domain information |
|---|
Probab=82.94 E-value=8.7 Score=37.40 Aligned_cols=235 Identities=12% Similarity=0.054 Sum_probs=108.6
Q ss_pred CccEeeeeccccCccCCccccC---CCCCCEEEccCCcCCccc----ccccCCCCCCEEEcccccCCC----CCC----c
Q 040495 171 KLERLFIFHNHITGQLPASIGN---LSSLLAFDVRENILWGRI----DSLVQLRNLRLLDIAFNHFSG----MIP----P 235 (443)
Q Consensus 171 ~L~~L~l~~n~l~~~~~~~l~~---l~~L~~L~l~~n~l~~~~----~~l~~l~~L~~L~l~~n~~~~----~~~----~ 235 (443)
.+.+++++.|.....+|..+.. -..++.++.++..+.-.. ...+.-.+++..+++.|..+. +.+ .
T Consensus 215 ~lteldls~n~~Kddip~~~n~~a~~~vl~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~s~skg~Egg~~~k~ 294 (553)
T KOG4242|consen 215 WLTELDLSTNGGKDDIPRTLNKKAGTLVLFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGTSPSKGEEGGGAEKD 294 (553)
T ss_pred cccccccccCCCCccchhHHHHhhhhhhhhcccccccccchhhcccccccccccccchhhhccCCCCccccccccccccc
Confidence 3666777777666566654332 234555555554433222 122334566666666665431 111 1
Q ss_pred cccCCCCCcEEEcccCcCcccCChhhhcCC-----CCCcEEeCCCCcCCc-cCCccCcCCCCCCEEecccCcCccccchh
Q 040495 236 PIFNISSLEVISLSENRFTGSLPVDAGVNL-----PNLRQLSPNGNNFTG-SIPVSLSNASRLEMIEFSRNQFSGRVSVD 309 (443)
Q Consensus 236 ~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~-----~~L~~L~L~~n~l~~-~~~~~l~~~~~L~~L~l~~n~l~~~~~~~ 309 (443)
.+..-.++ +|++..+....+-+..+...+ ..=-.+++..|...+ .+-.+-.+-..++++....|.+.|..-..
T Consensus 295 ~fS~~~sg-hln~~~~~~psE~lks~LLgla~ne~t~g~rldl~~cp~~~a~vleaci~g~R~q~l~~rdnnldgeg~~v 373 (553)
T KOG4242|consen 295 TFSPDPSG-HLNSRPRYTPSEKLKSMLLGLAENEATLGARLDLRRCPLERAEVLEACIFGQRVQVLLQRDNNLDGEGGAV 373 (553)
T ss_pred ccCcCccc-ccccccccCchhhhhhhhcccccccccccccCChhhccccccchhhccccceeeeEeeccccccccccccc
Confidence 22233445 555555443322222211000 001123333333221 11111112234777888877776654432
Q ss_pred --hhCCCCCCEEEccCCCC---cccCCCchhhHhhhcCCCCCCEEEccCCcCcccCChhHhhh--ccCCCEEeccCCcCe
Q 040495 310 --FSRLKNLSFLNMGINNL---GTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANF--SSTIKQIAMGRNRIS 382 (443)
Q Consensus 310 --~~~l~~L~~L~l~~n~l---~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~--~~~L~~L~L~~n~l~ 382 (443)
..+-+..+.+++..-.- .+.....-.....-....-++.+.++.|++....-..+... .+.+..+++++|.-.
T Consensus 374 gk~~~s~s~r~l~agrs~~kqvm~s~~~a~~v~k~~~~~g~l~el~ls~~~lka~l~s~in~l~stqtl~kldisgn~mg 453 (553)
T KOG4242|consen 374 GKRKQSKSGRILKAGRSGDKQVMDSSTEAPPVSKKSRTHGVLAELSLSPGPLKAGLESAINKLLSTQTLAKLDISGNGMG 453 (553)
T ss_pred cceeeccccccccccccCCceeccccccchhhhhhhcccccccCcccCCCcccccHHHHHHhhccCcccccccccCCCcc
Confidence 33445666666654221 11100000000111223347778888887763322222211 357788888888655
Q ss_pred ec----CchhhhcCCCCCeEeCcCCcCc
Q 040495 383 GT----IPPGIRSHANLNWLTMDSNLFT 406 (443)
Q Consensus 383 ~~----~p~~l~~~~~L~~L~L~~n~~~ 406 (443)
.. +|..+.....++.+..+.|...
T Consensus 454 d~gap~lpkalq~n~rlr~ipds~n~p~ 481 (553)
T KOG4242|consen 454 DGGAPPLPKALQSNCRLRPIPDSLNLPE 481 (553)
T ss_pred cCCCCcCccccCCCCccCCCCCCCCCcc
Confidence 32 4555555666777777666554
|
|
| >smart00364 LRR_BAC Leucine-rich repeats, bacterial type | Back alignment and domain information |
|---|
Probab=82.62 E-value=0.89 Score=24.69 Aligned_cols=18 Identities=33% Similarity=0.553 Sum_probs=13.2
Q ss_pred CCCCEEEccCCcCcccCCc
Q 040495 417 KNLQLLDLGGNFLQGSIPS 435 (443)
Q Consensus 417 ~~L~~L~l~~n~l~~~~p~ 435 (443)
++|++|++++|+++ .+|+
T Consensus 2 ~~L~~L~vs~N~Lt-~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLT-SLPE 19 (26)
T ss_pred cccceeecCCCccc-cCcc
Confidence 45778888888877 6665
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 443 | ||||
| 3rgx_A | 768 | Structural Insight Into Brassinosteroid Perception | 4e-35 | ||
| 3rgx_A | 768 | Structural Insight Into Brassinosteroid Perception | 1e-13 | ||
| 3rgx_A | 768 | Structural Insight Into Brassinosteroid Perception | 5e-06 | ||
| 3riz_A | 772 | Crystal Structure Of The Plant Steroid Receptor Bri | 5e-35 | ||
| 3riz_A | 772 | Crystal Structure Of The Plant Steroid Receptor Bri | 2e-13 | ||
| 3riz_A | 772 | Crystal Structure Of The Plant Steroid Receptor Bri | 5e-06 | ||
| 1ogq_A | 313 | The Crystal Structure Of Pgip (Polygalacturonase In | 2e-20 | ||
| 1ogq_A | 313 | The Crystal Structure Of Pgip (Polygalacturonase In | 8e-11 | ||
| 1ogq_A | 313 | The Crystal Structure Of Pgip (Polygalacturonase In | 3e-05 | ||
| 2omu_A | 462 | Crystal Structure Of Inla G194s+s Y369s/hec1 Comple | 3e-11 | ||
| 2omt_A | 462 | Crystal Structure Of Inla G194s+sHEC1 COMPLEX Lengt | 6e-11 | ||
| 2omx_A | 462 | Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX | 9e-11 | ||
| 2omv_A | 461 | Crystal Structure Of Inla S192n Y369s/hec1 Complex | 1e-10 | ||
| 2omz_A | 466 | Crystal Structure Of Inla Y369a/hec1 Complex Length | 2e-10 | ||
| 1o6s_A | 466 | Internalin (Listeria Monocytogenes) E-Cadherin (Hum | 2e-10 | ||
| 2omy_A | 461 | Crystal Structure Of Inla S192n/hec1 Complex Length | 2e-10 | ||
| 3b2d_A | 603 | Crystal Structure Of Human Rp105MD-1 Complex Length | 2e-05 | ||
| 3rg1_A | 612 | Crystal Structure Of The Rp105MD-1 Complex Length = | 7e-05 | ||
| 3t6q_A | 606 | Crystal Structure Of Mouse Rp105MD-1 Complex Length | 2e-04 | ||
| 2z66_A | 306 | Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 A | 2e-04 | ||
| 4g8a_A | 635 | Crystal Structure Of Human Tlr4 Polymorphic Variant | 2e-04 | ||
| 3fxi_A | 605 | Crystal Structure Of The Human Tlr4-Human Md-2-E.Co | 2e-04 |
| >pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768 | Back alignment and structure |
|
| >pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768 | Back alignment and structure |
|
| >pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768 | Back alignment and structure |
|
| >pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772 | Back alignment and structure |
|
| >pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772 | Back alignment and structure |
|
| >pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772 | Back alignment and structure |
|
| >pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313 | Back alignment and structure |
|
| >pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313 | Back alignment and structure |
|
| >pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313 | Back alignment and structure |
|
| >pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex Length = 462 | Back alignment and structure |
|
| >pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX Length = 462 | Back alignment and structure |
|
| >pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX Length = 462 | Back alignment and structure |
|
| >pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex Length = 461 | Back alignment and structure |
|
| >pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex Length = 466 | Back alignment and structure |
|
| >pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human) Recognition Complex Length = 466 | Back alignment and structure |
|
| >pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex Length = 461 | Back alignment and structure |
|
| >pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex Length = 603 | Back alignment and structure |
|
| >pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex Length = 612 | Back alignment and structure |
|
| >pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex Length = 606 | Back alignment and structure |
|
| >pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And Hagfish Vlrb.61 Length = 306 | Back alignment and structure |
|
| >pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g And T399i In Complex With Md-2 And Lps Length = 635 | Back alignment and structure |
|
| >pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps Ra Complex Length = 605 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 289 bits (741), Expect = 3e-90
Identities = 114/373 (30%), Positives = 186/373 (49%), Gaps = 17/373 (4%)
Query: 77 TRLDLRNQSIGGPLSPYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSG 136
LD+ + + + P++G+ S L++++++ N G+ I L+ L +S+N F G
Sbjct: 203 EFLDVSSNNFSTGI-PFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVG 261
Query: 137 TIPTNLSRRSNLIELSVDTNYLVGEIPSAI-GSLFKLERLFIFHNHITGQLPASIGNLSS 195
IP +L LS+ N GEIP + G+ L L + NH G +P G+ S
Sbjct: 262 PIPP--LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSL 319
Query: 196 LLAFDVRENILWGRI--DSLVQLRNLRLLDIAFNHFSGMIPPPIFNIS-SLEVISLSENR 252
L + + N G + D+L+++R L++LD++FN FSG +P + N+S SL + LS N
Sbjct: 320 LESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNN 379
Query: 253 FTGSLPVDAGVN-LPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFS 311
F+G + + N L++L N FTG IP +LSN S L + S N SG +
Sbjct: 380 FSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLG 439
Query: 312 RLKNLSFLNMGINNL-GTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFSST 370
L L L + +N L G L LE L + N G +P ++N ++
Sbjct: 440 SLSKLRDLKLWLNMLEGE-------IPQELMYVKTLETLILDFNDLTGEIPSGLSNCTN- 491
Query: 371 IKQIAMGRNRISGTIPPGIRSHANLNWLTMDSNLFTGTIPPVIGELKNLQLLDLGGNFLQ 430
+ I++ NR++G IP I NL L + +N F+G IP +G+ ++L LDL N
Sbjct: 492 LNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFN 551
Query: 431 GSIPSSLGNLTLL 443
G+IP+++ +
Sbjct: 552 GTIPAAMFKQSGK 564
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 257 bits (660), Expect = 2e-78
Identities = 115/376 (30%), Positives = 172/376 (45%), Gaps = 22/376 (5%)
Query: 77 TRLDLRNQSIGGPLSP---YVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNS 133
LDL SI G L+++ ++ N G++ + R LE L +S+N+
Sbjct: 154 EVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNN 211
Query: 134 FSGTIPTNLSRRSNLIELSVDTNYLVGEIPSAIGSLFKLERLFIFHNHITGQLPASIGNL 193
FS IP L S L L + N L G+ AI + +L+ L I N G +P L
Sbjct: 212 FSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PL 268
Query: 194 SSLLAFDVRENILWGRIDSLV--QLRNLRLLDIAFNHFSGMIPPPIFNISSLEVISLSEN 251
SL + EN G I + L LD++ NHF G +PP + S LE ++LS N
Sbjct: 269 KSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSN 328
Query: 252 RFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNAS-RLEMIEFSRNQFSGRVSVDF 310
F+G LP+D + + L+ L + N F+G +P SL+N S L ++ S N FSG + +
Sbjct: 329 NFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNL 388
Query: 311 SR--LKNLSFLNMGINNL-GTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANF 367
+ L L + N G L+NCS+L L+ + N G +P S+ +
Sbjct: 389 CQNPKNTLQELYLQNNGFTGK-------IPPTLSNCSELVSLHLSFNYLSGTIPSSLGSL 441
Query: 368 SSTIKQIAMGRNRISGTIPPGIRSHANLNWLTMDSNLFTGTIPPVIGELKNLQLLDLGGN 427
S ++ + + N + G IP + L L +D N TG IP + NL + L N
Sbjct: 442 SK-LRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNN 500
Query: 428 FLQGSIPSSLGNLTLL 443
L G IP +G L L
Sbjct: 501 RLTGEIPKWIGRLENL 516
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 254 bits (651), Expect = 3e-77
Identities = 107/374 (28%), Positives = 178/374 (47%), Gaps = 19/374 (5%)
Query: 77 TRLDLRNQSIGGPLSPYV-GNLSFLRYINLANNGFLGEIPPQIGRLNM-LEGLVLSNNSF 134
L L + + G L + L+ ++L+ N F GE+P + L+ L L LS+N+F
Sbjct: 321 ESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNF 380
Query: 135 SGTIPTNLSR--RSNLIELSVDTNYLVGEIPSAIGSLFKLERLFIFHNHITGQLPASIGN 192
SG I NL + ++ L EL + N G+IP + + +L L + N+++G +P+S+G+
Sbjct: 381 SGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGS 440
Query: 193 LSSLLAFDVRENILWGRI-DSLVQLRNLRLLDIAFNHFSGMIPPPIFNISSLEVISLSEN 251
LS L + N+L G I L+ ++ L L + FN +G IP + N ++L ISLS N
Sbjct: 441 LSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNN 500
Query: 252 RFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFS 311
R TG +P G L NL L + N+F+G+IP L + L ++ + N F+G +
Sbjct: 501 RLTGEIPKWIG-RLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMF 559
Query: 312 RLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLY--FNRNRFQGVLPQSMANFSS 369
+ N + N + + N FQG+ + + S+
Sbjct: 560 KQSGKIAANFIAGK----------RYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLST 609
Query: 370 TIKQIAMGRNRISGTIPPGIRSHANLNWLTMDSNLFTGTIPPVIGELKNLQLLDLGGNFL 429
+ G P ++ ++ +L M N+ +G IP IG + L +L+LG N +
Sbjct: 610 -RNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDI 668
Query: 430 QGSIPSSLGNLTLL 443
GSIP +G+L L
Sbjct: 669 SGSIPDEVGDLRGL 682
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 254 bits (650), Expect = 5e-77
Identities = 102/425 (24%), Positives = 174/425 (40%), Gaps = 48/425 (11%)
Query: 28 ANSNETDRLALLAIKLQLHDPLGVTSSWNNSMSLCQWTGVTCGRRHQRVTRLDLRNQSIG 87
+ S + L++ K L D + W+++ + C + GVTC R +VT +DL ++ +
Sbjct: 7 SQSLYREIHQLISFKDVLPDK-NLLPDWSSNKNPCTFDGVTC--RDDKVTSIDLSSKPL- 62
Query: 88 GPLSPYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSN 147
N + + L LE L LSN+ +G++ ++
Sbjct: 63 --------------------NVGFSAVSSSLLSLTGLESLFLSNSHINGSVS-GFKCSAS 101
Query: 148 LIELSVDTNYLVGEIPSA--IGSLFKLERLFIFHNHITGQLPASIG-NLSSLLAFDVREN 204
L L + N L G + + +GS L+ L + N + S G L+SL D+ N
Sbjct: 102 LTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSAN 161
Query: 205 ILWGRI----DSLVQLRNLRLLDIAFNHFSGMIPPPIFNISSLEVISLSENRFTGSLPVD 260
+ G L+ L I+ N SG + + +LE + +S N F+ +P
Sbjct: 162 SISGANVVGWVLSDGCGELKHLAISGNKISGDV--DVSRCVNLEFLDVSSNNFSTGIP-- 217
Query: 261 AGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLN 320
+ L+ L +GN +G ++S + L+++ S NQF G + LK+L +L+
Sbjct: 218 FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVG--PIPPLPLKSLQYLS 275
Query: 321 MGINNL-GTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRN 379
+ N G L C L L + N F G +P + S ++ +A+ N
Sbjct: 276 LAENKFTGEIPD------FLSGACDTLTGLDLSGNHFYGAVPPFFGSCSL-LESLALSSN 328
Query: 380 RISGTIPPG-IRSHANLNWLTMDSNLFTGTIPPVIGELK-NLQLLDLGGNFLQGSIPSSL 437
SG +P + L L + N F+G +P + L +L LDL N G I +L
Sbjct: 329 NFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNL 388
Query: 438 GNLTL 442
Sbjct: 389 CQNPK 393
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 216 bits (553), Expect = 3e-63
Identities = 98/362 (27%), Positives = 144/362 (39%), Gaps = 37/362 (10%)
Query: 77 TRLDLRNQSIGGPLSPYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSG 136
L L+N G + P + N S L ++L+ N G IP +G L+ L L L N G
Sbjct: 397 QELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEG 456
Query: 137 TIPTNLSRRSNLIELSVDTNYLVGEIPSAIGSLFKLERLFIFHNHITGQLPASIGNLSSL 196
IP L L L +D N L GEIPS + + L + + +N +TG++P IG L +L
Sbjct: 457 EIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENL 516
Query: 197 LAFDVRENILWGRI-DSLVQLRNLRLLDIAFNHFSGMIPPPIFNISSLEVISLSENRFTG 255
+ N G I L R+L LD+ N F+G IP +F S ++ N G
Sbjct: 517 AILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGK----IAANFIAG 572
Query: 256 SLPVDAGVN-LPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLK 314
V + + + N F G L+ S + + G S F
Sbjct: 573 KRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNG 632
Query: 315 NLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQI 374
++ FL+M N G +P+ + + + +
Sbjct: 633 SMMFLDMS------------------------------YNMLSGYIPKEIGSMPY-LFIL 661
Query: 375 AMGRNRISGTIPPGIRSHANLNWLTMDSNLFTGTIPPVIGELKNLQLLDLGGNFLQGSIP 434
+G N ISG+IP + LN L + SN G IP + L L +DL N L G IP
Sbjct: 662 NLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 721
Query: 435 SS 436
Sbjct: 722 EM 723
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 180 bits (458), Expect = 5e-50
Identities = 72/270 (26%), Positives = 125/270 (46%), Gaps = 18/270 (6%)
Query: 180 NHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLRLLDIAFNHFSGMIPPP--I 237
N + +S+ +L+ L + + + + G + +L LD++ N SG + +
Sbjct: 63 NVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSL 122
Query: 238 FNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSL---SNASRLEM 294
+ S L+ +++S N V G+ L +L L + N+ +G+ V L+
Sbjct: 123 GSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKH 182
Query: 295 IEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRN 354
+ S N+ SG V SR NL FL++ NN T I L +CS L+ L + N
Sbjct: 183 LAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTG-------IPFLGDCSALQHLDISGN 233
Query: 355 RFQGVLPQSMANFSSTIKQIAMGRNRISGTIPPGIRSHANLNWLTMDSNLFTGTIPPVI- 413
+ G ++++ + +K + + N+ G IPP +L +L++ N FTG IP +
Sbjct: 234 KLSGDFSRAISTCTE-LKLLNISSNQFVGPIPPLPLK--SLQYLSLAENKFTGEIPDFLS 290
Query: 414 GELKNLQLLDLGGNFLQGSIPSSLGNLTLL 443
G L LDL GN G++P G+ +LL
Sbjct: 291 GACDTLTGLDLSGNHFYGAVPPFFGSCSLL 320
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 104 bits (262), Expect = 4e-24
Identities = 35/141 (24%), Positives = 55/141 (39%)
Query: 79 LDLRNQSIGGPLSPYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTI 138
G S + LS N+ + + G P + L +S N SG I
Sbjct: 589 GAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYI 648
Query: 139 PTNLSRRSNLIELSVDTNYLVGEIPSAIGSLFKLERLFIFHNHITGQLPASIGNLSSLLA 198
P + L L++ N + G IP +G L L L + N + G++P ++ L+ L
Sbjct: 649 PKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTE 708
Query: 199 FDVRENILWGRIDSLVQLRNL 219
D+ N L G I + Q
Sbjct: 709 IDLSNNNLSGPIPEMGQFETF 729
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 240 bits (615), Expect = 1e-76
Identities = 86/300 (28%), Positives = 129/300 (43%), Gaps = 13/300 (4%)
Query: 31 NETDRLALLAIKLQLHDPLGVTSSWNNSMSLCQ--WTGVTCGRRHQ--RVTRLDLRNQSI 86
N D+ ALL IK L +P SSW + C W GV C Q RV LDL ++
Sbjct: 4 NPQDKQALLQIKKDLGNP-TTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNL 62
Query: 87 GG--PLSPYVGNLSFLRYINLAN-NGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLS 143
P+ + NL +L ++ + N +G IPP I +L L L +++ + SG IP LS
Sbjct: 63 PKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLS 122
Query: 144 RRSNLIELSVDTNYLVGEIPSAIGSLFKLERLFIFHNHITGQLPASIGNLSSLLAF-DVR 202
+ L+ L N L G +P +I SL L + N I+G +P S G+ S L +
Sbjct: 123 QIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTIS 182
Query: 203 ENILWGRIDSLVQLRNLRLLDIAFNHFSGMIPPPIFNISSLEVISLSENRFTGSLPVDAG 262
N L G+I NL +D++ N G + + + I L++N L
Sbjct: 183 RNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG--KV 240
Query: 263 VNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRV--SVDFSRLKNLSFLN 320
NL L N G++P L+ L + S N G + + R ++ N
Sbjct: 241 GLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYAN 300
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 158 bits (401), Expect = 4e-45
Identities = 62/239 (25%), Positives = 97/239 (40%), Gaps = 18/239 (7%)
Query: 211 DSLVQLRNLRLLDIAFNHFSG--MIPPPIFNISSLEVISLS-ENRFTGSLPVDAGVNLPN 267
D+ Q + LD++ + IP + N+ L + + N G +P L
Sbjct: 44 DTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIA-KLTQ 102
Query: 268 LRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNL- 326
L L N +G+IP LS L ++FS N SG + S L NL + N +
Sbjct: 103 LHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRIS 162
Query: 327 GTRTANELDFI-NLLANCSKLER-LYFNRNRFQGVLPQSMANFSSTIKQIAMGRNRISGT 384
G I + + SKL + +RNR G +P + AN + + + + RN + G
Sbjct: 163 GA--------IPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN--LAFVDLSRNMLEGD 212
Query: 385 IPPGIRSHANLNWLTMDSNLFTGTIPPVIGELKNLQLLDLGGNFLQGSIPSSLGNLTLL 443
S N + + N + +G KNL LDL N + G++P L L L
Sbjct: 213 ASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFL 270
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 109 bits (275), Expect = 4e-27
Identities = 40/161 (24%), Positives = 61/161 (37%), Gaps = 3/161 (1%)
Query: 77 TRLDLRNQSIGGPLSPYVGNLSFL-RYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFS 135
+ I G + G+ S L + ++ N G+IPP LN L + LS N
Sbjct: 152 VGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLE 210
Query: 136 GTIPTNLSRRSNLIELSVDTNYLVGEIPSAIGSLFKLERLFIFHNHITGQLPASIGNLSS 195
G N ++ + N L ++ +G L L + +N I G LP + L
Sbjct: 211 GDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKF 269
Query: 196 LLAFDVRENILWGRIDSLVQLRNLRLLDIAFNHFSGMIPPP 236
L + +V N L G I L+ + A N P P
Sbjct: 270 LHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLP 310
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 98.4 bits (246), Expect = 4e-23
Identities = 37/174 (21%), Positives = 61/174 (35%), Gaps = 30/174 (17%)
Query: 271 LSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLGTRT 330
+ G + + + R+ ++ S + S
Sbjct: 31 TDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSS------------------- 71
Query: 331 ANELDFINLLANCSKLERLYF-NRNRFQGVLPQSMANFSSTIKQIAMGRNRISGTIPPGI 389
LAN L LY N G +P ++A + + + + +SG IP +
Sbjct: 72 ---------LANLPYLNFLYIGGINNLVGPIPPAIAKLTQ-LHYLYITHTNVSGAIPDFL 121
Query: 390 RSHANLNWLTMDSNLFTGTIPPVIGELKNLQLLDLGGNFLQGSIPSSLGNLTLL 443
L L N +GT+PP I L NL + GN + G+IP S G+ + L
Sbjct: 122 SQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKL 175
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 181 bits (460), Expect = 6e-51
Identities = 70/464 (15%), Positives = 136/464 (29%), Gaps = 89/464 (19%)
Query: 34 DRLALLAIKLQLHDP--------LGVTSSWNNSMSLCQWT---GVTCGRRHQRVTRLDLR 82
D LAL I L+ ++WN + L W GV+ RVT L L
Sbjct: 31 DYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELDMWGAQPGVSLNSN-GRVTGLSLE 89
Query: 83 NQSIGGPLSPYVGNLSFLRYINLANN----GFLGEIPPQIGRLNMLEGLVLSNNSFSGTI 138
G + +G L+ L + L ++ P I E + T
Sbjct: 90 GFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTF 149
Query: 139 PTNLSRR--SNLIELSVDTNYLVGEIPSAIGSLFKLERLFIFHNHITGQLPASIGNLSSL 196
R S+LI+ ++++ I + K ++ N+IT + ++ L+
Sbjct: 150 VDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLT-- 206
Query: 197 LAFDVRENILWGRIDSLVQLRNLRLLDIAFNHFSGM-------------------IPPPI 237
LR + + F
Sbjct: 207 ---------------------KLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKW 245
Query: 238 FNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFT--------GSIPVSLSNA 289
N+ L + + LP LP ++ ++ N
Sbjct: 246 DNLKDLTDVEVYNCPNLTKLPTFLK-ALPEMQLINVACNRGISGEQLKDDWQALADAPVG 304
Query: 290 SRLEMIEFSRNQF-SGRVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLER 348
++++I N + V ++K L L N L + + KL
Sbjct: 305 EKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEG-------KLPAFGSEIKLAS 357
Query: 349 LYFNRNRFQGVLPQSMANFSSTIKQIAMGRNRISGTIPP--GIRSHANLNWLTMDSNLFT 406
L N+ +P + F+ ++ ++ N++ IP +S + ++ + N
Sbjct: 358 LNLAYNQITE-IPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIG 415
Query: 407 G-------TIPPVIGELKNLQLLDLGGNFLQGSIPSSLGNLTLL 443
+ P + N+ ++L N + + L
Sbjct: 416 SVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPL 459
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 179 bits (457), Expect = 2e-50
Identities = 61/391 (15%), Positives = 122/391 (31%), Gaps = 31/391 (7%)
Query: 77 TRLDLRNQSIGGPLSPYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSG 136
+ + N N + L L + + N
Sbjct: 209 RQFYMGNSPFVAE-----NICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLT 263
Query: 137 TIPTNLSRRSNLIELSVDTNYLV--------GEIPSAIGSLFKLERLFIFHNHI-TGQLP 187
+PT L + ++V N + + + K++ ++I +N++ T +
Sbjct: 264 KLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVE 323
Query: 188 ASIGNLSSLLAFDVRENILWGRIDSLVQLRNLRLLDIAFNHFSGMIPPPIF-NISSLEVI 246
S+ + L + N L G++ + L L++A+N + IP +E +
Sbjct: 324 TSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITE-IPANFCGFTEQVENL 382
Query: 247 SLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTG-------SIPVSLSNASRLEMIEFSR 299
S + N+ + ++ + + + N + + + I S
Sbjct: 383 SFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSN 442
Query: 300 NQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANELDFINL-LANCSKLERLYFNRNRFQG 358
NQ S FS LS +N+ N L N L N N L + N+
Sbjct: 443 NQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTK 502
Query: 359 VLPQSMANFSSTIKQIAMGRNRISGTIPPGIRSHANLNWLTMDSNL------FTGTIPPV 412
+ A + I + N S P + + L + + P
Sbjct: 503 LSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEG 561
Query: 413 IGELKNLQLLDLGGNFLQGSIPSSLGNLTLL 443
I +L L +G N ++ N+++L
Sbjct: 562 ITLCPSLTQLQIGSNDIRKVNEKITPNISVL 592
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 170 bits (434), Expect = 3e-47
Identities = 63/396 (15%), Positives = 122/396 (30%), Gaps = 43/396 (10%)
Query: 79 LDLRNQSIGGPLSPYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSF---- 134
+ NL L + + N L ++P + L ++ + ++ N
Sbjct: 230 ENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGE 289
Query: 135 ----SGTIPTNLSRRSNLIELSVDTNYL-VGEIPSAIGSLFKLERLFIFHNHITGQLPAS 189
+ + + + N L + +++ + KL L +N + G +
Sbjct: 290 QLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEG-KLPA 348
Query: 190 IGNLSSLLAFDVRENILWGRIDSLVQ-LRNLRLLDIAFNHFSGMIPPPIF--NISSLEVI 246
G+ L + ++ N + + + L A N IP ++S + I
Sbjct: 349 FGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKY-IPNIFDAKSVSVMSAI 407
Query: 247 SLSENRFTG-------SLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSR 299
S N L N+ ++ + N + S S L I
Sbjct: 408 DFSYNEIGSVDGKNFDPLDPTPF-KGINVSSINLSNNQISKFPKELFSTGSPLSSINLMG 466
Query: 300 NQFSG-------RVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFN 352
N + + +F L+ +++ N L T+ +++ L L + +
Sbjct: 467 NMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKL-TKLSDDFRATTL----PYLVGIDLS 521
Query: 353 RNRFQGVLPQSMANFSS-----TIKQIAMGRNRISGTIPPGIRSHANLNWLTMDSNLFTG 407
N F P N S+ Q NR P GI +L L + SN
Sbjct: 522 YNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIR- 579
Query: 408 TIPPVIGELKNLQLLDLGGNFLQGSIPSSLGNLTLL 443
+ I N+ +LD+ N S +
Sbjct: 580 KVNEKI--TPNISVLDIKDNPNISIDLSYVCPYIEA 613
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 102 bits (256), Expect = 2e-23
Identities = 37/248 (14%), Positives = 67/248 (27%), Gaps = 28/248 (11%)
Query: 77 TRLDLRNQSIGG-PLSPYVGNLSFLRYINLANN-------GFLGEIPPQIGRLNMLEGLV 128
L + + P ++S + I+ + N + P + + +
Sbjct: 380 ENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSIN 439
Query: 129 LSNNSFSGTIPTNLSRRSNLIELSVDTNYLVG-------EIPSAIGSLFKLERLFIFHNH 181
LSNN S S S L +++ N L + + + L + + N
Sbjct: 440 LSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNK 499
Query: 182 ITGQLPASI--GNLSSLLAFDVRENIL------WGRIDSLVQLRNLRLLDIAFNHFSGMI 233
+T L L L+ D+ N +L D N
Sbjct: 500 LTK-LSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREW 558
Query: 234 PPPIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLE 293
P I SL + + N + PN+ L N +
Sbjct: 559 PEGITLCPSLTQLQIGSNDIR-KVNEKI---TPNISVLDIKDNPNISIDLSYVCPYIEAG 614
Query: 294 MIEFSRNQ 301
M ++
Sbjct: 615 MYMLFYDK 622
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 55.4 bits (134), Expect = 2e-08
Identities = 19/113 (16%), Positives = 35/113 (30%), Gaps = 10/113 (8%)
Query: 77 TRLDLRNQSIGGPLSPYVGNLSFLRYI------NLANNGFLGEIPPQIGRLNMLEGLVLS 130
+DL S N S L+ + N L E P I L L +
Sbjct: 516 VGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIG 574
Query: 131 NNSFSGTIPTNLSRRSNLIELSVDTNYLVGEIPSAIGSLFKLERLFIFHNHIT 183
+N + ++ N+ L + N + S + + +F++
Sbjct: 575 SNDIR-KVNEKIT--PNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQ 624
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 55.4 bits (134), Expect = 2e-08
Identities = 23/138 (16%), Positives = 46/138 (33%), Gaps = 11/138 (7%)
Query: 77 TRLDLRNQSIGG-PLSPYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSN---- 131
T +DLR + L +L I+L+ N + P Q + L+G + N
Sbjct: 491 TSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYN-SFSKFPTQPLNSSTLKGFGIRNQRDA 549
Query: 132 --NSFSGTIPTNLSRRSNLIELSVDTNYLVGEIPSAIGSLFKLERLFIFHNHITGQLPAS 189
N P ++ +L +L + +N + + I + L I N +
Sbjct: 550 QGNRTLREWPEGITLCPSLTQLQIGSNDIRK-VNEKITP--NISVLDIKDNPNISIDLSY 606
Query: 190 IGNLSSLLAFDVRENILW 207
+ + + +
Sbjct: 607 VCPYIEAGMYMLFYDKTQ 624
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 172 bits (437), Expect = 6e-47
Identities = 60/453 (13%), Positives = 124/453 (27%), Gaps = 52/453 (11%)
Query: 27 CANSNETDRLALLAIKLQLH-----------DPLGVTSSWNNSMSLCQWTGVTCGRRHQ- 74
D AL AI L + + +WN + L W
Sbjct: 263 ETAEYIKDYKALKAIWEALDGKNWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNN 322
Query: 75 -RVTRLDLRNQSIGGPLSPYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNS 133
RVT L L G + +G L+ L+ ++ + + +
Sbjct: 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHR 382
Query: 134 FSGTIPTNLS------RRSNLIELSVDTNYLVGEIPSAIGSLFKLERLFIFHNHITGQLP 187
S+L++ +++ N + I K ++ N IT +
Sbjct: 383 IRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-IS 441
Query: 188 ASIGNLSSLLAFDVRENILWGRIDSLVQLRNLRLLDIAFNHFSGMIPPPIFNISSLEVIS 247
+I L+ L + + + + N+ L +
Sbjct: 442 KAIQRLTKLQIIYFANS----PFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVE 497
Query: 248 LSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTG---------SIPVSLSNASRLEMIEFS 298
L LP +LP L+ L+ N + ++++
Sbjct: 498 LYNCPNMTQLPDFLY-DLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMG 556
Query: 299 RNQFSG-RVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQ 357
N S ++ L L+ N + + KL L + N+ +
Sbjct: 557 YNNLEEFPASASLQKMVKLGLLDCVHNKVRH--------LEAFGTNVKLTDLKLDYNQIE 608
Query: 358 GVLPQSMANFSSTIKQIAMGRNRISGTIPP--GIRSHANLNWLTMDSNLFTG-----TIP 410
+P+ F+ ++ + N++ IP +S + + N +
Sbjct: 609 E-IPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCS 666
Query: 411 PVIGELKNLQLLDLGGNFLQGSIPSSLGNLTLL 443
+ N + L N +Q + +
Sbjct: 667 MDDYKGINASTVTLSYNEIQKFPTELFATGSPI 699
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 165 bits (420), Expect = 1e-44
Identities = 64/484 (13%), Positives = 140/484 (28%), Gaps = 54/484 (11%)
Query: 2 LSPISIFCCLATLSLSLLLHSHKTICANSNETDRLALLAIKLQLHDPLGVTSSWNNSMSL 61
+S T +S + D L + L D + + +
Sbjct: 361 VSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAI---NRNPEMKPI 417
Query: 62 CQWTGVTCGRRHQRVTRLDLRNQSIGGPLSPYVGNLSFLRYINLANN------------- 108
+ + ++ + T++ I +S + L+ L+ I AN+
Sbjct: 418 KKDSRISL-----KDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWED 471
Query: 109 ------GFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSVDTNYLVG-- 160
L L + L N +P L L L++ N +
Sbjct: 472 ANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAA 531
Query: 161 -------EIPSAIGSLFKLERLFIFHNHITG-QLPASIGNLSSLLAFDVRENILWGRIDS 212
+ + K++ ++ +N++ AS+ + L D N + +++
Sbjct: 532 QLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKV-RHLEA 590
Query: 213 LVQLRNLRLLDIAFNHFSGMIPPPIF-NISSLEVISLSENRFTGSLPVDAGVNLPNLRQL 271
L L + +N IP +E + S N+ + ++ + +
Sbjct: 591 FGTNVKLTDLKLDYNQIEE-IPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSV 649
Query: 272 SPNGNNFTG-----SIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNL 326
+ N S + + S N+ + F+ +S + + N +
Sbjct: 650 DFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLM 709
Query: 327 GTRTANELDFINL-LANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNRISGTI 385
+ N L + N L + N+ + A + + + N S +
Sbjct: 710 TSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFS-SF 768
Query: 386 PPGIRSHANLNWLTMDSNL------FTGTIPPVIGELKNLQLLDLGGNFLQGSIPSSLGN 439
P + + L + P I +L L +G N ++
Sbjct: 769 PTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKLTPQ 828
Query: 440 LTLL 443
L +L
Sbjct: 829 LYIL 832
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 153 bits (389), Expect = 1e-40
Identities = 63/396 (15%), Positives = 120/396 (30%), Gaps = 44/396 (11%)
Query: 79 LDLRNQSIGGPLSPYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSG-- 136
+ NL L + L N + ++P + L L+ L ++ N
Sbjct: 472 ANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAA 531
Query: 137 -------TIPTNLSRRSNLIELSVDTNYLVGEIPSA-IGSLFKLERLFIFHNHITGQLPA 188
+ + + + N L SA + + KL L HN + L
Sbjct: 532 QLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-HLE- 589
Query: 189 SIGNLSSLLAFDVRENILWGRIDSLVQ-LRNLRLLDIAFNHFSGMIPPPIF--NISSLEV 245
+ G L + N + + + L + N IP ++ +
Sbjct: 590 AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKY-IPNIFNAKSVYVMGS 648
Query: 246 ISLSENRFTGSLPVDAGVNLP-----NLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRN 300
+ S N+ S + ++ N ++ + N + S + I S N
Sbjct: 649 VDFSYNKIG-SEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNN 707
Query: 301 QFS-------GRVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNR 353
+ ++ L+ +++ N L T +++ L L + +
Sbjct: 708 LMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKL-TSLSDDFRATTL----PYLSNMDVSY 762
Query: 354 NRFQGVLPQSMANFSS-----TIKQIAMGRNRISGTIPPGIRSHANLNWLTMDSNLFTGT 408
N F P N S Q NRI P GI + +L L + SN
Sbjct: 763 NCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIR-K 820
Query: 409 IPPVIGELKNLQLLDLGGN-FLQGSIPSSLGNLTLL 443
+ + L +LD+ N + + S +
Sbjct: 821 VDEKL--TPQLYILDIADNPNISIDVTSVCPYIEAG 854
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 86.1 bits (213), Expect = 4e-18
Identities = 37/239 (15%), Positives = 60/239 (25%), Gaps = 37/239 (15%)
Query: 77 TRLDLRNQSIGG-----PLSPYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSN 131
+D IG S + L+ N + + ++LSN
Sbjct: 647 GSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSN 706
Query: 132 NSFS-------GTIPTNLSRRSNLIELSVDTNYLVGEIPSAI--GSLFKLERLFIFHNHI 182
N + N L + + N L + +L L + + +N
Sbjct: 707 NLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCF 765
Query: 183 TGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLRLLDIAFNHFSGMIPPPIFNISS 242
+ P N S L AF +R D N P I S
Sbjct: 766 SS-FPTQPLNSSQLKAFGIRHQ-----------------RDAEGNRILRQWPTGITTCPS 807
Query: 243 LEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQ 301
L + + N + P L L N S+ M ++
Sbjct: 808 LIQLQIGSNDIR-KVDEKL---TPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDK 862
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 81.5 bits (201), Expect = 1e-16
Identities = 34/196 (17%), Positives = 64/196 (32%), Gaps = 19/196 (9%)
Query: 72 RHQRVTRLDLRNQSIGGPLSPYVGNLSFLRYINLANNGF-------LGEIPPQIGRLNML 124
+ + + L I + S + I L+NN L +L
Sbjct: 671 KGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLL 730
Query: 125 EGLVLSNNSFSGTIPTNL--SRRSNLIELSVDTNYLVGEIPSAIGSLFKLERLFIFH--- 179
+ L N + ++ + + L + V N P+ + +L+ I H
Sbjct: 731 TTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCF-SSFPTQPLNSSQLKAFGIRHQRD 788
Query: 180 ---NHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLRLLDIAFNHFSGMIPPP 236
N I Q P I SL+ + N + ++D + L +LDIA N +
Sbjct: 789 AEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKL-TPQLYILDIADNPNISIDVTS 846
Query: 237 IFNISSLEVISLSENR 252
+ + L ++
Sbjct: 847 VCPYIEAGMYVLLYDK 862
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 165 bits (421), Expect = 3e-45
Identities = 65/388 (16%), Positives = 134/388 (34%), Gaps = 27/388 (6%)
Query: 76 VTRLDLRNQSIGGPLSPYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFS 135
+T L+L + + + S L +++ N P +L ML+ L L +N S
Sbjct: 27 ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS 86
Query: 136 GTIPTNLSRRSNLIELSVDTNYLVGEIPSAIGSLFKLERLFIFHNHITGQLPASIGNLSS 195
+ +NL EL + +N + + L L + HN ++ + L +
Sbjct: 87 QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLEN 146
Query: 196 LLAFDVRENILWGRID---SLVQLRNLRLLDIAFNHFSGMIPPPIFNISSLEVISLSENR 252
L + N + + +L+ L+++ N P I L + L+ +
Sbjct: 147 LQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQ 206
Query: 253 FTGSLP--VDAGVNLPNLRQLSPNGNNFTGSIPVSLSN--ASRLEMIEFSRNQFSGRVSV 308
SL + + ++R LS + + + + + + L M++ S N + +
Sbjct: 207 LGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGND 266
Query: 309 DFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRN---------RFQGV 359
F+ L L + + NN+ ++ L + L R+ +
Sbjct: 267 SFAWLPQLEYFFLEYNNIQHLFSHS------LHGLFNVRYLNLKRSFTKQSISLASLPKI 320
Query: 360 LPQSMANFSSTIKQIAMGRNRISGTIPPGIRSHANLNWLTMDSNLFTGTIPP----VIGE 415
S ++ + M N I G NL +L++ ++ + V
Sbjct: 321 DDFSFQWLKC-LEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLA 379
Query: 416 LKNLQLLDLGGNFLQGSIPSSLGNLTLL 443
L +L+L N + + L L
Sbjct: 380 HSPLHILNLTKNKISKIESDAFSWLGHL 407
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 158 bits (402), Expect = 1e-42
Identities = 65/410 (15%), Positives = 121/410 (29%), Gaps = 31/410 (7%)
Query: 56 NNSMSLCQWTGVTCGRRHQRVTRLDLRNQSIGGPLSPYVGNLSF--LRYINLANNGFLGE 113
N + + + + L L N + + L + L ++L+ N
Sbjct: 204 NVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVV 263
Query: 114 IPPQIGRLNMLEGLVLSNNSFSGTIPTNLSR---------RSNLIELSVDTNYLVGEIPS 164
L LE L N+ +L + + + S+ L
Sbjct: 264 GNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDF 323
Query: 165 AIGSLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRN-----L 219
+ L LE L + N I G L +L + + R + + L
Sbjct: 324 SFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPL 383
Query: 220 RLLDIAFNHFSGMIPPPIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFT 279
+L++ N S + + LEV+ L N L L N+ ++ + N +
Sbjct: 384 HILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYL 443
Query: 280 GSIPVSLSNASRLEMIEFSRNQFSG--RVSVDFSRLKNLSFLNMGINNLGTRTANELDFI 337
S + L+ + R F L+NL+ L++ NN+ +
Sbjct: 444 QLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDD----- 498
Query: 338 NLLANCSKLERLYFNRNRFQGVLPQSMANFS-------STIKQIAMGRNRISGTIPPGIR 390
+L KLE L N + + S + + + N +
Sbjct: 499 -MLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFK 557
Query: 391 SHANLNWLTMDSNLFTGTIPPVIGELKNLQLLDLGGNFLQGSIPSSLGNL 440
L + + N V +L+ L+L N + G
Sbjct: 558 DLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPA 607
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 149 bits (379), Expect = 2e-39
Identities = 69/356 (19%), Positives = 119/356 (33%), Gaps = 23/356 (6%)
Query: 97 LSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSVDTN 156
+ + +NL +N R + L L + N+ S P + L L++ N
Sbjct: 24 PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN 83
Query: 157 YLVGEIPSAIGSLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRID-SLVQ 215
L L L + N I +L+ D+ N L + VQ
Sbjct: 84 ELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQ 143
Query: 216 LRNLRLLDIAFNHFSGMIPPPI--FNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSP 273
L NL+ L ++ N + + F SSL+ + LS N+ + L L
Sbjct: 144 LENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKE-FSPGCFHAIGRLFGLFL 202
Query: 274 NGNNFTGSIPVSLS---NASRLEMIEFSRNQFSGRVSVDFSRLK--NLSFLNMGINNLGT 328
N S+ L + + + S +Q S + F LK NL+ L++ NNL
Sbjct: 203 NNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNV 262
Query: 329 RTANELDFINLLANCSKLERLYFNRNRFQGVLPQSMAN--------FSSTIKQIAMGRNR 380
+ A +LE + N Q + S+ + + ++
Sbjct: 263 VGNDS------FAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLAS 316
Query: 381 ISGTIPPGIRSHANLNWLTMDSNLFTGTIPPVIGELKNLQLLDLGGNFLQGSIPSS 436
+ + L L M+ N G + L NL+ L L +F ++
Sbjct: 317 LPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTN 372
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 123 bits (312), Expect = 1e-30
Identities = 68/326 (20%), Positives = 111/326 (34%), Gaps = 23/326 (7%)
Query: 77 TRLDLRNQSIGGPLSPYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSG 136
T+ + S+ L L ++N+ +N G L L+ L LSN+ S
Sbjct: 308 TKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSL 367
Query: 137 TIPTNLS----RRSNLIELSVDTNYLVGEIPSAIGSLFKLERLFIFHNHITGQLPAS-IG 191
TN + S L L++ N + A L LE L + N I +L
Sbjct: 368 RTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWR 427
Query: 192 NLSSLLAFDVRENILWGRI-DSLVQLRNLRLLDIAFNHFSGM--IPPPIFNISSLEVISL 248
L ++ + N +S + +L+ L + + P P + +L ++ L
Sbjct: 428 GLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDL 487
Query: 249 SENRFTGSLPVDAGVNLPNLRQLSPNGNNFT--------GSIPVSLSNASRLEMIEFSRN 300
S N + D L L L NN G L S L ++ N
Sbjct: 488 SNNNIAN-INDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESN 546
Query: 301 QFSGRVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVL 360
F F L L +++G+NNL T A+ + N L+ L +N V
Sbjct: 547 GFDEIPVEVFKDLFELKIIDLGLNNLNTLPAS------VFNNQVSLKSLNLQKNLITSVE 600
Query: 361 PQSMANFSSTIKQIAMGRNRISGTIP 386
+ + ++ M N T
Sbjct: 601 KKVFGPAFRNLTELDMRFNPFDCTCE 626
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 93.1 bits (232), Expect = 2e-20
Identities = 40/204 (19%), Positives = 68/204 (33%), Gaps = 13/204 (6%)
Query: 242 SLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQ 301
S EV S + T +P D N+ L+ N + + S+L ++ N
Sbjct: 5 SHEVADCSHLKLT-QVPDDL---PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNT 60
Query: 302 FSGRVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLP 361
S +L L LN+ N L + A C+ L L+ N Q +
Sbjct: 61 ISKLEPELCQKLPMLKVLNLQHNELSQLSD------KTFAFCTNLTELHLMSNSIQKIKN 114
Query: 362 QSMANFSSTIKQIAMGRNRISGTIPPGIRSHANLNWLTMDSNLFTGTIPPVIGELKN--L 419
+ + + + N +S T NL L + +N + N L
Sbjct: 115 NPFVKQKN-LITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSL 173
Query: 420 QLLDLGGNFLQGSIPSSLGNLTLL 443
+ L+L N ++ P + L
Sbjct: 174 KKLELSSNQIKEFSPGCFHAIGRL 197
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 63.9 bits (156), Expect = 4e-11
Identities = 41/209 (19%), Positives = 60/209 (28%), Gaps = 35/209 (16%)
Query: 77 TRLDLRNQSIGGPLSPYVGNLSFLRYINLANN--------GFLGEIPPQIGRLNMLEGLV 128
T LDL N +I + L L ++L +N G + L+ L L
Sbjct: 483 TILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILN 542
Query: 129 LSNNSFSGTIPTNLSRRSNLIELSVDTNYLVGEIPSAIGSLFKLERLFIFHNHITGQLPA 188
L +N F L + + N L S + L+ L + N IT
Sbjct: 543 LESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKK 602
Query: 189 SIGNLSSLLAFDVRENILWGRIDSLVQLRNLRLLDIAFNHFSGMIP-----PPIFNISSL 243
G RNL LD+ FN F N +
Sbjct: 603 VFGPA----------------------FRNLTELDMRFNPFDCTCESIAWFVNWINETHT 640
Query: 244 EVISLSENRFTGSLPVDAGVNLPNLRQLS 272
+ LS + + P G + S
Sbjct: 641 NIPELSSHYLCNTPPHYHGFPVRLFDTSS 669
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 153 bits (389), Expect = 4e-41
Identities = 71/385 (18%), Positives = 121/385 (31%), Gaps = 33/385 (8%)
Query: 76 VTRLDLRNQSIGGPLSPYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFS 135
LDL + S + L+ ++L+ L+ L L+L+ N
Sbjct: 30 TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89
Query: 136 GTIPTNLSRRSNLIELSVDTNYLVGEIPSAIGSLFKLERLFIFHNHITG-QLPASIGNLS 194
S S+L +L L IG L L+ L + HN I +LP NL+
Sbjct: 90 SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT 149
Query: 195 SLLAFDVRENILWGRI-DSLVQLRNLRL----LDIAFNHFSGMIPPPIFNISSLEVISLS 249
+L D+ N + L L + L LD++ N + I P F L ++L
Sbjct: 150 NLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF-IQPGAFKEIRLHKLTLR 208
Query: 250 ENRFTGSLPVDAGVNLPNLRQLS------PNGNNFTGSIPVSLSNASRLEMIEFSRNQ-- 301
N + ++ L L N N +L L + EF
Sbjct: 209 NNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLD 268
Query: 302 -FSGRVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVL 360
+ + F+ L N+S ++ + + + + L +F
Sbjct: 269 YYLDDIIDLFNCLTNVSSFSLVSVTIER--------VKDFSYNFGWQHLELVNCKFGQFP 320
Query: 361 PQSMANFSSTIKQIAMGRNRISGTIPPGIRSHANLNWLTMDSN--LFTGTIPPVIGELKN 418
+ + G +L +L + N F G +
Sbjct: 321 TLKLKSLKRLT------FTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTS 374
Query: 419 LQLLDLGGNFLQGSIPSSLGNLTLL 443
L+ LDL N + + S+ L L
Sbjct: 375 LKYLDLSFNGVIT-MSSNFLGLEQL 398
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 130 bits (329), Expect = 4e-33
Identities = 72/404 (17%), Positives = 135/404 (33%), Gaps = 47/404 (11%)
Query: 77 TRLDL-RNQSIGGPLSPYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLE----GLVLSN 131
L++ N L Y NL+ L +++L++N + L+ + L LS
Sbjct: 127 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 186
Query: 132 NSFSGTIPTNLSRRSNLIELSVDTNYLVGEIPS-AIGSLFKLERL------FIFHNHITG 184
N + I + L +L++ N+ + I L LE F ++
Sbjct: 187 NPMNF-IQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEK 245
Query: 185 QLPASIGNLSSLLAFDVRENILWGRIDSLV----QLRNLRLLDIAFNHFSGMIPPPIFNI 240
+++ L +L + R L +D ++ L N+ + +
Sbjct: 246 FDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERV--KDFSYN 303
Query: 241 SSLEVISLSENRFTGSLP------------------VDAGVNLPNLRQ--LSPNGNNFTG 280
+ + L +F + V+LP+L LS NG +F G
Sbjct: 304 FGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKG 363
Query: 281 SIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLL 340
S + L+ ++ S N +S +F L+ L L+ +NL ++ ++
Sbjct: 364 CCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNL-----KQMSEFSVF 417
Query: 341 ANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNRISGTIPPGI-RSHANLNWLT 399
+ L L + + SS ++ + M N P I NL +L
Sbjct: 418 LSLRNLIYLDISHTHTRVAFNGIFNGLSS-LEVLKMAGNSFQENFLPDIFTELRNLTFLD 476
Query: 400 MDSNLFTGTIPPVIGELKNLQLLDLGGNFLQGSIPSSLGNLTLL 443
+ P L +LQ+L++ N L L
Sbjct: 477 LSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSL 520
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 127 bits (322), Expect = 4e-32
Identities = 65/379 (17%), Positives = 122/379 (32%), Gaps = 28/379 (7%)
Query: 72 RHQRVTRLDLRNQSIGGPLSPYV-GNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLV-- 128
+ R+ +L LRN + L+ L L F E + + LEGL
Sbjct: 198 KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNL 257
Query: 129 -------LSNNSFSGTIPTNLSRRSNLIELSVDTNYLVGEIPSAIGSLFKLERLFIFHNH 181
+ + I + +N+ S+ + + + F + L + +
Sbjct: 258 TIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSY--NFGWQHLELVNCK 315
Query: 182 ITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLRLLDIAFNH--FSGMIPPPIFN 239
+ +L L + G S V L +L LD++ N F G F
Sbjct: 316 FGQFPTLKLKSLKRL----TFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFG 371
Query: 240 ISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVS-LSNASRLEMIEFS 298
+SL+ + LS N + + L L L +N S + L ++ S
Sbjct: 372 TTSLKYLDLSFNGVIT-MSSNFL-GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDIS 429
Query: 299 RNQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQG 358
+ F+ L +L L M N+ E ++ L L ++ + +
Sbjct: 430 HTHTRVAFNGIFNGLSSLEVLKMAGNSF-----QENFLPDIFTELRNLTFLDLSQCQLEQ 484
Query: 359 VLPQSMANFSSTIKQIAMGRNRISGTIPPGIRSHANLNWLTMDSNLFTGTIPPVIGEL-K 417
+ P + + SS ++ + M N + +L L N + +
Sbjct: 485 LSPTAFNSLSS-LQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPS 543
Query: 418 NLQLLDLGGNFLQGSIPSS 436
+L L+L N +
Sbjct: 544 SLAFLNLTQNDFACTCEHQ 562
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 118 bits (299), Expect = 4e-29
Identities = 65/317 (20%), Positives = 115/317 (36%), Gaps = 14/317 (4%)
Query: 74 QRVTRLDLRNQSIGGPLSPYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNS 133
V+ L + +I +++ L N F G+ P L L+ L ++N
Sbjct: 282 TNVSSFSLVSVTIERVKD--FSYNFGWQHLELVNCKF-GQFPTLK--LKSLKRLTFTSNK 336
Query: 134 FSGTIPTNLSRRSNLIELSVDTNYLVGEIPSAIGSLFKLERLFIFHNHITGQLPASIGNL 193
++LS + G + L+ L + N + + ++ L
Sbjct: 337 GGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGL 395
Query: 194 SSLLAFDVRENILWGRIDS--LVQLRNLRLLDIAFNHFSGMIPPPIFNISSLEVISLSEN 251
L D + + L + + LRNL LDI+ H +SSLEV+ ++ N
Sbjct: 396 EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN 455
Query: 252 RFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFS 311
F + D L NL L + P + ++ S L+++ S N F + +
Sbjct: 456 SFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYK 515
Query: 312 RLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLP-QSMANFSST 370
L +L L+ +N++ T EL S L L +N F QS +
Sbjct: 516 CLNSLQVLDYSLNHIMTSKKQELQ-----HFPSSLAFLNLTQNDFACTCEHQSFLQWIKD 570
Query: 371 IKQIAMGRNRISGTIPP 387
+Q+ + R+ P
Sbjct: 571 QRQLLVEVERMECATPS 587
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 116 bits (293), Expect = 2e-28
Identities = 52/326 (15%), Positives = 104/326 (31%), Gaps = 20/326 (6%)
Query: 129 LSNNSFSGTIPTNLSRRSNLIELSVDTNYLVGEIPSAIGSLFKLERLFIFHNHITGQLPA 188
+F IP NL + L + N L + S +L+ L + I
Sbjct: 14 CMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDG 70
Query: 189 SIGNLSSLLAFDVRENILWGRI-DSLVQLRNLRLLDIAFNHFSGMIPPPIFNISSLEVIS 247
+ +LS L + N + + L +L+ L + + + PI ++ +L+ ++
Sbjct: 71 AYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELN 130
Query: 248 LSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEF----SRNQFS 303
++ N + NL NL L + N L ++ ++ S N +
Sbjct: 131 VAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN 190
Query: 304 GRVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQS 363
F + L L + N + + L ++ RL R +G L +
Sbjct: 191 FIQPGAFKEI-RLHKLTLRNNFD-SLNVMKTCIQGL--AGLEVHRLVLGEFRNEGNLEKF 246
Query: 364 MANFSSTIKQIAMGRNRIS------GTIPPGIRSHANLNWLTMDSNLFTGTIPPVIGELK 417
+ + + + R++ I N++ ++ S
Sbjct: 247 DKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD--FSYNF 304
Query: 418 NLQLLDLGGNFLQGSIPSSLGNLTLL 443
Q L+L L +L L
Sbjct: 305 GWQHLELVNCKFGQFPTLKLKSLKRL 330
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 142 bits (359), Expect = 5e-37
Identities = 68/380 (17%), Positives = 127/380 (33%), Gaps = 18/380 (4%)
Query: 75 RVTRLDLRNQSIGGPLSPYVGNLSFLR--YINLANNGFLGEIPPQIGRLNMLEGLVLSNN 132
++ LD +N +I + +L +NL N + I P + + L
Sbjct: 154 KLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGN-DIAGIEPGAFDSAVFQSLNFGGT 212
Query: 133 SFSGTIPTNLSRRS--NLIELSVDTNYLVGEIPSAIGSLFK--LERLFIFHNHITGQLPA 188
I L + +L + + P+ L + +E + + ++
Sbjct: 213 QNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSN 272
Query: 189 SIGNLSSLLAFDVRENILWGRIDSLVQLRNLRLLDIAFNHFSGMIPPPIFNISSLEVISL 248
+ S L D+ L LV L L+ L ++ N F + N SL +S+
Sbjct: 273 TFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSI 332
Query: 249 SENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGS--IPVSLSNASRLEMIEFSRNQFSGRV 306
N L NL NLR+L + ++ S + L N S L+ + S N+
Sbjct: 333 KGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLK 392
Query: 307 SVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQSMAN 366
+ F L L++ L D + N L+ L + + Q
Sbjct: 393 TEAFKECPQLELLDLAFTRL-----KVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDG 447
Query: 367 FSSTIKQIAMGRNRISGTI---PPGIRSHANLNWLTMDSNLFTGTIPPVIGELKNLQLLD 423
+ ++ + + N +++ L L + + LK + +D
Sbjct: 448 LPA-LQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVD 506
Query: 424 LGGNFLQGSIPSSLGNLTLL 443
L N L S +L +L +
Sbjct: 507 LSHNRLTSSSIEALSHLKGI 526
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 138 bits (351), Expect = 6e-36
Identities = 61/376 (16%), Positives = 118/376 (31%), Gaps = 16/376 (4%)
Query: 76 VTRLDLRNQSIGGPLSPYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFS 135
L+ + + L L +++L + L+ LVL+ N
Sbjct: 35 TECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLI 94
Query: 136 GTIPTNLSRRSNLIELSVDTNYLVGEIPSAIGSLFKLERLFIFHNHITGQLPASIGNLSS 195
T LS L L + + + LE L++ NHI+
Sbjct: 95 FMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEK 154
Query: 196 LLAFDVRENILWG-RIDSLVQLRNLRLLDIAFNH-FSGMIPPPIFNISSLEVISLSENRF 253
L D + N + + + L+ L + N I P F+ + + ++ +
Sbjct: 155 LKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQN 214
Query: 254 TG-SLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSN--ASRLEMIEFSRNQFSGRVSVDF 310
+ +L + + P +E I ++ F S F
Sbjct: 215 LLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTF 274
Query: 311 SRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFSST 370
L L++ +L + L S L++L + N+F+ + S +NF S
Sbjct: 275 HCFSGLQELDLTATHLSE-------LPSGLVGLSTLKKLVLSANKFENLCQISASNFPS- 326
Query: 371 IKQIAMGRNRISGTIPPGIRSH-ANLNWLTMDSNLFT--GTIPPVIGELKNLQLLDLGGN 427
+ +++ N + G + NL L + + + L +LQ L+L N
Sbjct: 327 LTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYN 386
Query: 428 FLQGSIPSSLGNLTLL 443
+ L
Sbjct: 387 EPLSLKTEAFKECPQL 402
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 133 bits (337), Expect = 4e-34
Identities = 63/382 (16%), Positives = 128/382 (33%), Gaps = 19/382 (4%)
Query: 72 RHQRVTRLDLRNQSIGGPLSPYVGNLSFLRYINLANNGFLGEIPPQIG--RLNMLEGLVL 129
+ L+L I G + P + + + +N L I + + L
Sbjct: 177 QQATNLSLNLNGNDIAG-IEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTF 235
Query: 130 SNNSFSGTIPTNLS--RRSNLIELSVDTNYLVGEIPSAIGSLFKLERLFIFHNHITGQLP 187
+ P ++ +++ +Y + L+ L + H++ +LP
Sbjct: 236 EDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELP 294
Query: 188 ASIGNLSSLLAFDVRENILWGRID-SLVQLRNLRLLDIAFNHFSGMIPPPIF-NISSLEV 245
+ + LS+L + N S +L L I N + N+ +L
Sbjct: 295 SGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRE 354
Query: 246 ISLSENRFTGS-LPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSG 304
+ LS + S NL +L+ L+ + N + +LE+++ + +
Sbjct: 355 LDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKV 414
Query: 305 RVS-VDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQS 363
+ + F L L LN+ + L + L L+ L N F Q
Sbjct: 415 KDAQSPFQNLHLLKVLNLSHSLLDISSEQ------LFDGLPALQHLNLQGNHFPKGNIQK 468
Query: 364 MANFS--STIKQIAMGRNRISGTIPPGIRSHANLNWLTMDSNLFTGTIPPVIGELKNLQL 421
+ ++ + + +S S +N + + N T + + LK + L
Sbjct: 469 TNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIYL 528
Query: 422 LDLGGNFLQGSIPSSLGNLTLL 443
+L N + +PS L L+
Sbjct: 529 -NLASNHISIILPSLLPILSQQ 549
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 125 bits (317), Expect = 2e-31
Identities = 56/351 (15%), Positives = 111/351 (31%), Gaps = 34/351 (9%)
Query: 97 LSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSVDTN 156
+ + + N RL L L L+ + L L + N
Sbjct: 32 PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTAN 91
Query: 157 YLVGEIPSAIGSLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQL 216
L+ +A+ L+ LF I+ + N
Sbjct: 92 PLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQK---------------------- 129
Query: 217 RNLRLLDIAFNHFSGMIPPPIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPN-G 275
L L + NH S + P F L+V+ N L + +L LS N
Sbjct: 130 -TLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIH-YLSKEDMSSLQQATNLSLNLN 187
Query: 276 NNFTGSIPVSLSNASRLEMIEFSRNQFSGRV--SVDFSRLKNLSFLNMGINNLGTRTANE 333
N I +++ + + F Q + + S +++L + +
Sbjct: 188 GNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAV 247
Query: 334 LDFINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNRISGTIPPGIRSHA 393
+ + + +E + ++ F + + FS ++++ + +S +P G+ +
Sbjct: 248 FEGLCEM----SVESINLQKHYFFNISSNTFHCFSG-LQELDLTATHLS-ELPSGLVGLS 301
Query: 394 NLNWLTMDSNLFTGTIPPVIGELKNLQLLDLGGNFLQGSIPS-SLGNLTLL 443
L L + +N F +L L + GN + + + L NL L
Sbjct: 302 TLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENL 352
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 123 bits (312), Expect = 8e-31
Identities = 59/365 (16%), Positives = 116/365 (31%), Gaps = 36/365 (9%)
Query: 74 QRVTRLDLRNQSIGGPLSPYVGNLSF--LRYINLANNGFLGEIPPQIGRLNMLEGLVLSN 131
Q + + L + INL + F + L+ L L+
Sbjct: 228 QSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTA 287
Query: 132 NSFSGTIPTNLSRRSNLIELSVDTNYLVGEIPSAIGSLFKLERLFIFHNHITGQL-PASI 190
S +P+ L S L +L + N + + L L I N +L +
Sbjct: 288 THLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCL 346
Query: 191 GNLSSLLAFDVRENILWG---RIDSLVQLRNLRLLDIAFNHFSGMIPPPIFNISSLEVIS 247
NL +L D+ + + L L +L+ L++++N + LE++
Sbjct: 347 ENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLD 406
Query: 248 LSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVS 307
L+ R NL L+ L+ + + S L+ + N F
Sbjct: 407 LAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPK--- 463
Query: 308 VDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANF 367
+ N L +LE L + + + +
Sbjct: 464 ------------------------GNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSL 499
Query: 368 SSTIKQIAMGRNRISGTIPPGIRSHANLNWLTMDSNLFTGTIPPVIGELKNLQLLDLGGN 427
+ + + NR++ + SH +L + SN + +P ++ L + ++L N
Sbjct: 500 KM-MNHVDLSHNRLT-SSSIEALSHLKGIYLNLASNHISIILPSLLPILSQQRTINLRQN 557
Query: 428 FLQGS 432
L +
Sbjct: 558 PLDCT 562
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 43.5 bits (103), Expect = 1e-04
Identities = 11/79 (13%), Positives = 20/79 (25%)
Query: 365 ANFSSTIKQIAMGRNRISGTIPPGIRSHANLNWLTMDSNLFTGTIPPVIGELKNLQLLDL 424
++ + + N + NL +L + L L L
Sbjct: 29 GTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVL 88
Query: 425 GGNFLQGSIPSSLGNLTLL 443
N L ++L L
Sbjct: 89 TANPLIFMAETALSGPKAL 107
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 136 bits (344), Expect = 5e-35
Identities = 70/419 (16%), Positives = 125/419 (29%), Gaps = 53/419 (12%)
Query: 76 VTRLDLRNQSIGGPLSPYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFS 135
+DL + S N S L++++L+ L+ L L+L+ N
Sbjct: 34 TKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQ 93
Query: 136 GTIPTNLSRRSNLIELSVDTNYLVGEIPSAIGSLFKLERLFIFHNHITG-QLPASIGNLS 194
P + S ++L L L IG L L++L + HN I +LPA NL+
Sbjct: 94 SFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLT 153
Query: 195 SLLAFDVRENILWG-RIDSLVQLRNLRL----LDIAFNHFSGMIPPPIFNISSLEVISLS 249
+L+ D+ N + ++ L LR LD++ N I F L ++L
Sbjct: 154 NLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPID-FIQDQAFQGIKLHELTLR 212
Query: 250 ENRFTGSLPVDAGVNLPNLR--------------------------------QLSPNGNN 277
N + ++ NL L + N
Sbjct: 213 GNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTN 272
Query: 278 FTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDF-SRLKNLSFLNMGINNLGTRTANELDF 336
V + + + + V + ++LS + + T L
Sbjct: 273 DFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKS 332
Query: 337 INL----------LANCSKLERLYFNRNRFQGVLPQSMANFSST-IKQIAMGRNRISGTI 385
+ L L L +RN S ++ + ++ + + N +
Sbjct: 333 LTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IM 391
Query: 386 PPGIRSHANLNWLTMDSNLFTGTIPP-VIGELKNLQLLDLGGNFLQGSIPSSLGNLTLL 443
L L + L+ L LD+ + LT L
Sbjct: 392 SANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSL 450
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 123 bits (312), Expect = 9e-31
Identities = 54/377 (14%), Positives = 107/377 (28%), Gaps = 25/377 (6%)
Query: 78 RLDLRNQSIGGPLSPYVGNLSFLRYINLANNGFLGEIPPQIGR-LNMLEGLVLSNNSFSG 136
LD+ I + L + L N I + L L L F
Sbjct: 185 SLDMSLNPIDF-IQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKD 243
Query: 137 TIPTNLSRRS--------NLIELSVDTNYLVGEIPSAIGSLFKLERLFIFHNHITGQLPA 188
+ S + E + + L + + + I
Sbjct: 244 ERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKY--LE 301
Query: 189 SIGNLSSLLAFDVRENILWGRIDSLVQLRNLRLLDIAFNHFSGMIPPPIFNISSLEVISL 248
+ + + L + + L L+ L + N S I + SL + L
Sbjct: 302 DVPKHFKWQSLSIIRCQL--KQFPTLDLPFLKSLTLTMNKGS--ISFKKVALPSLSYLDL 357
Query: 249 SENRFTGSLP-VDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVS 307
S N + S + + +LR L + N + + L+ ++F +
Sbjct: 358 SRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTE 416
Query: 308 VD-FSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQSMAN 366
F L+ L +L++ N + + L L N F+ ++
Sbjct: 417 FSAFLSLEKLLYLDISYTNTKIDFDG------IFLGLTSLNTLKMAGNSFKDNTLSNVFA 470
Query: 367 FSSTIKQIAMGRNRISGTIPPGIRSHANLNWLTMDSNLFTGTIPPVIGELKNLQLLDLGG 426
++ + + + + ++ + L L M N +L +L LD
Sbjct: 471 NTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSF 530
Query: 427 NFLQGSIPSSLGNLTLL 443
N ++ S L
Sbjct: 531 NRIETSKGILQHFPKSL 547
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 113 bits (284), Expect = 4e-27
Identities = 60/385 (15%), Positives = 117/385 (30%), Gaps = 54/385 (14%)
Query: 98 SFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSVDTNY 157
S + I+L+ N + L+ L LS +L L + N
Sbjct: 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP 91
Query: 158 LVGEIPSAIGSLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWG--RIDSLVQ 215
+ P + L LE L + IG L +L +V N +
Sbjct: 92 IQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSN 151
Query: 216 LRNLRLLDIAFNHFSG---------------------------MIPPPIFNISSLEVISL 248
L NL +D+++N+ I F L ++L
Sbjct: 152 LTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTL 211
Query: 249 SENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNAS--------RLEMIEFSRN 300
N + ++ NL L F + + S ++ +
Sbjct: 212 RGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYT 271
Query: 301 QFSGRVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVL 360
V F L N+S +++ ++ + + K + L R + +
Sbjct: 272 NDFSDDIVKFHCLANVSAMSLAGVSIKY--------LEDVPKHFKWQSLSIIRCQLKQFP 323
Query: 361 PQSMANFSSTIKQIAMGRNRISGTIPPGIRSHANLNWLTMDSNLFTGTIPPVIGELK--N 418
+ +K + + N+ S I + +L++L + N + + +L +
Sbjct: 324 TLDLPF----LKSLTLTMNKGS--ISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNS 377
Query: 419 LQLLDLGGNFLQGSIPSSLGNLTLL 443
L+ LDL N + ++ L L
Sbjct: 378 LRHLDLSFNGAI-IMSANFMGLEEL 401
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 111 bits (279), Expect = 2e-26
Identities = 63/363 (17%), Positives = 120/363 (33%), Gaps = 26/363 (7%)
Query: 77 TRLDLR-NQSIGGPLSPYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLV------- 128
L LR N + + + NL+ L L F E +I +++EGL
Sbjct: 207 HELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEF 266
Query: 129 -LSNNSFSGTIPTNLSRRSNLIELSVDTNYLVGEIPSAIGSLFKLERLFIFHNHITGQLP 187
L+ + +N+ +S+ + + + FK + L I +
Sbjct: 267 RLTYTNDFSDDIVKFHCLANVSAMSLAGVSI--KYLEDVPKHFKWQSLSIIRCQLKQFPT 324
Query: 188 ASIGNLSSLLAFDVRENILWGRIDSLVQLRNLRLLDIAFNHFSGMIPPPIFNI--SSLEV 245
+ L SL + N V L +L LD++ N S ++ +SL
Sbjct: 325 LDLPFLKSL---TLTMNKGSI-SFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRH 380
Query: 246 ISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVS-LSNASRLEMIEFSRNQFSG 304
+ LS N + + L L+ L + S + +L ++ S
Sbjct: 381 LDLSFNGAI--IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKI 438
Query: 305 RVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQSM 364
F L +L+ L M N+ + N+ AN + L L ++ + + +
Sbjct: 439 DFDGIFLGLTSLNTLKMAGNSF-----KDNTLSNVFANTTNLTFLDLSKCQLEQISWGVF 493
Query: 365 ANFSSTIKQIAMGRNRISGTIPPGIRSHANLNWLTMDSNLFTGTIPPVIGELKNLQLLDL 424
++ + M N + +L+ L N + + K+L +L
Sbjct: 494 DTLHR-LQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNL 552
Query: 425 GGN 427
N
Sbjct: 553 TNN 555
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 95.5 bits (238), Expect = 3e-21
Identities = 54/287 (18%), Positives = 94/287 (32%), Gaps = 18/287 (6%)
Query: 74 QRVTRLDLRNQSIGGPLSPYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNS 133
V+ + L SI V + +++ L + P L L+ L L+ N
Sbjct: 285 ANVSAMSLAGVSIKYL--EDVPKHFKWQSLSIIRCQ-LKQFPTL--DLPFLKSLTLTMNK 339
Query: 134 FSGTIPTNLSRRSNLIELSVDTNYL--VGEIPSAIGSLFKLERLFIFHNHITGQLPASIG 191
G+I +L L + N L G + L L + N + A+
Sbjct: 340 --GSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFM 396
Query: 192 NLSSLLAFDVRENILWG--RIDSLVQLRNLRLLDIAFNHFSGMIPPPIFNISSLEVISLS 249
L L D + + L + + L L LDI++ + ++SL + ++
Sbjct: 397 GLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMA 456
Query: 250 ENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVD 309
N F + + N NL L + RL+++ S N S
Sbjct: 457 GNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSH 516
Query: 310 FSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRF 356
+++L +LS L+ N + T L L N
Sbjct: 517 YNQLYSLSTLDCSFNRIETSKG------ILQHFPKSLAFFNLTNNSV 557
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 72.0 bits (177), Expect = 1e-13
Identities = 31/179 (17%), Positives = 52/179 (29%), Gaps = 4/179 (2%)
Query: 79 LDLRNQSIGGPLSPYVGNLSFLRYINLANNGFLGEIPPQ-IGRLNMLEGLVLSNNSFSGT 137
LDL +S L L++++ ++ L L L +S +
Sbjct: 381 LDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKID 439
Query: 138 IPTNLSRRSNLIELSVDTNYLVGEIPS-AIGSLFKLERLFIFHNHITGQLPASIGNLSSL 196
++L L + N S + L L + + L L
Sbjct: 440 FDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRL 499
Query: 197 LAFDVRENILWGRI-DSLVQLRNLRLLDIAFNHFSGMIPPPIFNISSLEVISLSENRFT 254
++ N L QL +L LD +FN SL +L+ N
Sbjct: 500 QLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVA 558
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 50.4 bits (121), Expect = 7e-07
Identities = 17/108 (15%), Positives = 37/108 (34%), Gaps = 1/108 (0%)
Query: 77 TRLDL-RNQSIGGPLSPYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFS 135
L + N LS N + L +++L+ L+ L+ L +S+N+
Sbjct: 451 NTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLL 510
Query: 136 GTIPTNLSRRSNLIELSVDTNYLVGEIPSAIGSLFKLERLFIFHNHIT 183
++ ++ +L L N + L + +N +
Sbjct: 511 FLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVA 558
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 1e-04
Identities = 19/79 (24%), Positives = 28/79 (35%)
Query: 365 ANFSSTIKQIAMGRNRISGTIPPGIRSHANLNWLTMDSNLFTGTIPPVIGELKNLQLLDL 424
+ S+ K I + N + + + L WL + L +L L L
Sbjct: 28 DDIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLIL 87
Query: 425 GGNFLQGSIPSSLGNLTLL 443
GN +Q P S LT L
Sbjct: 88 TGNPIQSFSPGSFSGLTSL 106
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 128 bits (324), Expect = 1e-33
Identities = 72/357 (20%), Positives = 139/357 (38%), Gaps = 32/357 (8%)
Query: 74 QRVTRLDLRNQSIGGPLSPYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNS 133
R L+ S+ L + + +A + I I L LE L L+ N
Sbjct: 22 AEGIRAVLQKASVTDV--VTQEELESITKLVVAGEK-VASIQG-IEYLTNLEYLNLNGNQ 77
Query: 134 FSGTIPTNLSRRSNLIELSVDTNYLVGEIPSAIGSLFKLERLFIFHNHITGQLPASIGNL 193
+ P LS L L + TN + SA+ +L L L++ ++I+ + + NL
Sbjct: 78 ITDISP--LSNLVKLTNLYIGTNKI--TDISALQNLTNLRELYLNEDNISD--ISPLANL 131
Query: 194 SSLLAFDVRENILWGRIDSLVQLRNLRLLDIAFNHFSGMIPPPIFNISSLEVISLSENRF 253
+ + + ++ N + L + L L + + + PI N++ L +SL+ N+
Sbjct: 132 TKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDV--TPIANLTDLYSLSLNYNQI 189
Query: 254 TGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRL 313
P+ +L +L + N T P ++N +RL ++ N+ + + L
Sbjct: 190 EDISPLA---SLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITD--LSPLANL 242
Query: 314 KNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQ 373
L++L +G N + IN + + +KL+ L N+ + + N S +
Sbjct: 243 SQLTWLEIGTNQISD--------INAVKDLTKLKMLNVGSNQISDI--SVLNNLSQ-LNS 291
Query: 374 IAMGRNRISGTIPPGIRSHANLNWLTMDSNLFTGTIPPVIGELKNLQLLDLGGNFLQ 430
+ + N++ I NL L + N T P + L + D ++
Sbjct: 292 LFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 128 bits (323), Expect = 1e-32
Identities = 90/369 (24%), Positives = 155/369 (42%), Gaps = 37/369 (10%)
Query: 76 VTRLDLRNQSIGGPLSPYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFS 135
VT L I V L+ L IN +NN L +I P + L L ++++NN +
Sbjct: 48 VTTLQADRLGIKSI--DGVEYLNNLTQINFSNN-QLTDITP-LKNLTKLVDILMNNNQIA 103
Query: 136 GTIPTNLSRRSNLIELSVDTNYLVGEIPSAIGSLFKLERLFIFHNHITGQLPASIGNLSS 195
P L+ +NL L++ N + + +L L RL + N I+ +++ L+S
Sbjct: 104 DITP--LANLTNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTS 157
Query: 196 LLAFDVRENILWGRIDSLVQLRNLRLLDIAFNHFSGMIPPPIFNISSLEVISLSENRFTG 255
L + + L L L LDI+ N S + +++LE + + N+ +
Sbjct: 158 LQQLSFGNQVT--DLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISD 213
Query: 256 SLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKN 315
P+ L NL +LS NGN +L++ + L ++ + NQ S S L
Sbjct: 214 ITPLG---ILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISN--LAPLSGLTK 266
Query: 316 LSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIA 375
L+ L +G N + I+ LA + L L N N+ + + P ++N + + +
Sbjct: 267 LTELKLGANQISN--------ISPLAGLTALTNLELNENQLEDISP--ISNLKN-LTYLT 315
Query: 376 MGRNRISGTIPPGIRSHANLNWLTMDSNLFTGTIPPVIGELKNLQLLDLGGNFLQGSIP- 434
+ N IS P + S L L +N + + L N+ L G N + P
Sbjct: 316 LYFNNISDISP--VSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQISDLTPL 371
Query: 435 SSLGNLTLL 443
++L +T L
Sbjct: 372 ANLTRITQL 380
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 109 bits (275), Expect = 2e-26
Identities = 82/355 (23%), Positives = 136/355 (38%), Gaps = 36/355 (10%)
Query: 77 TRLDLRNQSIGGPLSPYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSG 136
T L L N I + NL+ L + L++N + +I + L L+ L N
Sbjct: 115 TGLTLFNNQITDI--DPLKNLTNLNRLELSSNT-ISDISA-LSGLTSLQQLSFGNQV--- 167
Query: 137 TIPTNLSRRSNLIELSVDTNYLVGEIPSAIGSLFKLERLFIFHNHITGQLPASIGNLSSL 196
T L+ + L L + +N + S + L LE L +N I+ P +G L++L
Sbjct: 168 TDLKPLANLTTLERLDISSNKV--SDISVLAKLTNLESLIATNNQISDITP--LGILTNL 223
Query: 197 LAFDVRENILWGRIDSLVQLRNLRLLDIAFNHFSGMIPPPIFNISSLEVISLSENRFTGS 256
+ N L I +L L NL LD+A N S + P+ ++ L + L N+ +
Sbjct: 224 DELSLNGNQLKD-IGTLASLTNLTDLDLANNQISNL--APLSGLTKLTELKLGANQISNI 280
Query: 257 LPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNL 316
P+ L L L N N P +SN L + N S S L L
Sbjct: 281 SPLA---GLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISD--ISPVSSLTKL 333
Query: 317 SFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAM 376
L N++ ++ LAN + + L N+ + P +AN + I Q+ +
Sbjct: 334 QRLFFY--------NNKVSDVSSLANLTNINWLSAGHNQISDLTP--LANLTR-ITQLGL 382
Query: 377 GRNRISGTIPPGIRSHANLNWLTMDSNLFTGTIPPV-IGELKNLQLLDLGGNFLQ 430
+ P ++ N++ N+ I P I + + D+ N
Sbjct: 383 NDQAWT-NAPVNYKA--NVSIPNTVKNVTGALIAPATISDGGSYTEPDITWNLPS 434
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 96.2 bits (240), Expect = 1e-21
Identities = 64/310 (20%), Positives = 125/310 (40%), Gaps = 34/310 (10%)
Query: 148 LIELSVDTNYLVGEIPSAIGSLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILW 207
L ++ + + +I +L + + + ++T + +L + +
Sbjct: 3 LGSATITQDTPINQI-FTDTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGI- 58
Query: 208 GRIDSLVQLRNLRLLDIAFNHFSGMIPPPIFNISSLEVISLSENRFTGSLPVDAGVNLPN 267
ID + L NL ++ + N + + P+ N++ L I ++ N+ P+ NL N
Sbjct: 59 KSIDGVEYLNNLTQINFSNNQLTDI--TPLKNLTKLVDILMNNNQIADITPLA---NLTN 113
Query: 268 LRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLG 327
L L+ N T P L N + L +E S N S + S L +L L+ G
Sbjct: 114 LTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISA--LSGLTSLQQLSFGNQVTD 169
Query: 328 TR-------------TANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQI 374
+ ++N++ I++LA + LE L N+ + P + ++ + ++
Sbjct: 170 LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITP--LGILTN-LDEL 226
Query: 375 AMGRNRISGTIPPGIRSHANLNWLTMDSNLFTGTIPPVIGELKNLQLLDLGGNFLQGSIP 434
++ N++ + S NL L + +N + P + L L L LG N + P
Sbjct: 227 SLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP 282
Query: 435 -SSLGNLTLL 443
+ L LT L
Sbjct: 283 LAGLTALTNL 292
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 86.2 bits (214), Expect = 2e-18
Identities = 59/287 (20%), Positives = 100/287 (34%), Gaps = 25/287 (8%)
Query: 77 TRLDLRNQSIGGPLSPYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSG 136
L N I +G L+ L ++L N L +I + L L L L+NN S
Sbjct: 202 ESLIATNNQISD--ITPLGILTNLDELSLNGN-QLKDIGT-LASLTNLTDLDLANNQISN 257
Query: 137 TIPTNLSRRSNLIELSVDTNYLVGEIPSAIGSLFKLERLFIFHNHITGQLPASIGNLSSL 196
P LS + L EL + N + P + L L L + N + + I NL +L
Sbjct: 258 LAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLED--ISPISNLKNL 311
Query: 197 LAFDVRENILWGRIDSLVQLRNLRLLDIAFNHFSGMIPPPIFNISSLEVISLSENRFTGS 256
+ N + I + L L+ L N S + N++++ +S N+ +
Sbjct: 312 TYLTLYFNNISD-ISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQISDL 368
Query: 257 LPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNL 316
P+ NL + QL N +T + +N S ++ S +
Sbjct: 369 TPLA---NLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALI--APATISDGGSY 423
Query: 317 SFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQS 363
+ ++ N F S+ + F G + Q
Sbjct: 424 TEPDITWNLPSYTNEVSYTF-------SQPVTIGKGTTTFSGTVTQP 463
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 73.5 bits (181), Expect = 3e-14
Identities = 49/250 (19%), Positives = 97/250 (38%), Gaps = 26/250 (10%)
Query: 195 SLLAFDVRENILWGRIDSLVQLRNLRLLDIAFNHFSGMIPPPIFNISSLEVISLSENRFT 254
L + + ++ +I + L + + + ++ + +
Sbjct: 2 PLGSATITQDTPINQIFTDTALAEKMKTVLGKTNVTD--TVSQTDLDQVTTLQADRLGIK 59
Query: 255 GSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLK 314
V+ L NL Q++ + N T P L N ++L I + NQ + + L
Sbjct: 60 SIDGVE---YLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIAD--ITPLANLT 112
Query: 315 NLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQI 374
NL+ L + N + I+ L N + L RL + N + +++ +S ++Q+
Sbjct: 113 NLTGLTLFNNQITD--------IDPLKNLTNLNRLELSSNTISDI--SALSGLTS-LQQL 161
Query: 375 AMGRNRISGTIPPGIRSHANLNWLTMDSNLFTGTIPPVIGELKNLQLLDLGGNFLQGSIP 434
+ G N+++ P + + L L + SN + V+ +L NL+ L N + P
Sbjct: 162 SFG-NQVTDLKP--LANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITP 216
Query: 435 -SSLGNLTLL 443
L NL L
Sbjct: 217 LGILTNLDEL 226
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 112 bits (281), Expect = 8e-27
Identities = 74/420 (17%), Positives = 126/420 (30%), Gaps = 54/420 (12%)
Query: 76 VTRLDLRNQSIGGPLSPYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFS 135
LDL + S + L+ ++L+ L+ L L+L+ N
Sbjct: 30 TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89
Query: 136 GTIPTNLSRRSNLIELSVDTNYLVGEIPSAIGSLFKLERLFIFHNHIT-GQLPASIGNLS 194
S S+L +L L IG L L+ L + HN I +LP NL+
Sbjct: 90 SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT 149
Query: 195 SLLAFDVRENILW----GRIDSLVQLRNLRL-LDIAFNHFSGMIPPPIFNISSLEVISLS 249
+L D+ N + + L Q+ L L LD++ N + I P F L ++L
Sbjct: 150 NLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF-IQPGAFKEIRLHKLTLR 208
Query: 250 ENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGS---------------------------- 281
N + ++ L L F
Sbjct: 209 NNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLD 268
Query: 282 -----IPVSLSNASRLEMIEFSRNQFSGRVSVDF-SRLKNLSFLNMGINNLGTRTANELD 335
I + + + + ++L +N T L
Sbjct: 269 YYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLK 328
Query: 336 FINLLAN----------CSKLERLYFNRNRFQGVLPQSMANFSST-IKQIAMGRNRISGT 384
+ +N LE L +RN S ++F +T +K + + N + T
Sbjct: 329 RLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-T 387
Query: 385 IPPGIRSHANLNWLTMDSNLFTGTIPP-VIGELKNLQLLDLGGNFLQGSIPSSLGNLTLL 443
+ L L + V L+NL LD+ + + L+ L
Sbjct: 388 MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL 447
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 99.4 bits (248), Expect = 1e-22
Identities = 69/419 (16%), Positives = 118/419 (28%), Gaps = 53/419 (12%)
Query: 77 TRLDLRNQSIGGPLSPYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSG 136
LDL I +LS L + L N L+ L+ LV + +
Sbjct: 55 QVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLAS 114
Query: 137 TIPTNLSRRSNLIELSVDTNYL-VGEIPSAIGSLFKLERLFIFHNHITGQLPASIGNLSS 195
+ L EL+V N + ++P +L LE L + N I + L
Sbjct: 115 LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQ 174
Query: 196 L----LAFDVRENILWGRIDSLVQLRNLRLLDIAFNHFSGMIPPPIF-NISSLEVISLSE 250
+ L+ D+ N + + L L + N S + ++ LEV L
Sbjct: 175 MPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVL 234
Query: 251 NRFTG-----SLPVDAGVNLPNLRQLSPNGN---NFTGSIPVSLSNASRLEMIEFSRNQF 302
F A L NL + I + + +
Sbjct: 235 GEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTI 294
Query: 303 SGRVSVDF-SRLKNLSFLNMGINNLGTRTANELDFINLLAN----------CSKLERLYF 351
+ ++L +N T L + +N LE L
Sbjct: 295 ERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDL 354
Query: 352 NRNRFQGVLPQSMANFSST-IKQIAMGRNRISGTIPPGIRSHANLNWLTMDSNLFTGTIP 410
+RN S ++F +T +K + + N + T+ L L +
Sbjct: 355 SRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSE 413
Query: 411 P-------------------------VIGELKNLQLLDLGGNFLQGSIPS-SLGNLTLL 443
+ L +L++L + GN Q + L L
Sbjct: 414 FSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL 472
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 94.0 bits (234), Expect = 7e-21
Identities = 72/386 (18%), Positives = 136/386 (35%), Gaps = 32/386 (8%)
Query: 75 RVTRLDLRNQSIGGPLSPYVGNLSFLRY----INLANNGFLGEIPPQIGRLNMLEGLVLS 130
+ LDL + I + L + ++L+ N + I P + L L L
Sbjct: 150 NLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN-PMNFIQPGAFKEIRLHKLTLR 208
Query: 131 NNSFSGTIP-------TNLSRRSNLIELSVDTNYLVGEIPSAIGSLFKLERLFIFHNHIT 183
NN S + L ++ + L SA+ L L ++
Sbjct: 209 NNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLD 268
Query: 184 G---QLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLRLLDIAFNHFSGMIPPPIFNI 240
+ L+++ +F + + R+ + L++ F P +
Sbjct: 269 YYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNFGWQHLELVNCKFGQF---PTLKL 324
Query: 241 SSLEVISLSENRFTGSLPVDAGVNLPNLRQL--SPNGNNFTGSIPVSLSNASRLEMIEFS 298
SL+ ++ + N+ + + V+LP+L L S NG +F G S + L+ ++ S
Sbjct: 325 KSLKRLTFTSNKGGNAF---SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLS 381
Query: 299 RNQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQG 358
N +S +F L+ L L+ +NL ++ ++ + L L + +
Sbjct: 382 FNGVI-TMSSNFLGLEQLEHLDFQHSNL-----KQMSEFSVFLSLRNLIYLDISHTHTRV 435
Query: 359 VLPQSMANFSSTIKQIAMGRNRISGTIPPGI-RSHANLNWLTMDSNLFTGTIPPVIGELK 417
SS ++ + M N P I NL +L + P L
Sbjct: 436 AFNGIFNGLSS-LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS 494
Query: 418 NLQLLDLGGNFLQGSIPSSLGNLTLL 443
+LQ+L++ N L+ LT L
Sbjct: 495 SLQVLNMASNQLKSVPDGIFDRLTSL 520
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 91.3 bits (227), Expect = 6e-20
Identities = 63/364 (17%), Positives = 115/364 (31%), Gaps = 30/364 (8%)
Query: 78 RLDLRNQSIGGPLSPYVGNLSFLRYINLANNGFLGEIPPQ-IGRLNMLEGLVLSNNSFSG 136
LDL + + P L + L NN + I L LE L F
Sbjct: 181 SLDLSLNPMNF-IQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRN 239
Query: 137 T---IPTNLSRRSNLIELSVDTNYLVG------EIPSAIGSLFKLERLFIFHNHITGQLP 187
+ S L L+++ L +I L + + I
Sbjct: 240 EGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD 299
Query: 188 ASI-GNLSSLLAFDVRENILWGRIDSLVQLRNLRLLDIAFNHFSGMIPPPIFNISSLEVI 246
S L + + ++L++L+ L N ++ SLE +
Sbjct: 300 FSYNFGWQHLELVNCKFGQF-----PTLKLKSLKRLTFTSNKGGN--AFSEVDLPSLEFL 352
Query: 247 SLSENRFTG-SLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGR 305
LS N + + +L+ L + N ++ + +LE ++F +
Sbjct: 353 DLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQM 411
Query: 306 VSVD-FSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQSM 364
F L+NL +L++ + + S LE L N FQ +
Sbjct: 412 SEFSVFLSLRNLIYLDISHTHTRVAFNG------IFNGLSSLEVLKMAGNSFQENFLPDI 465
Query: 365 ANFSSTIKQIAMGRNRISGTIPPGI-RSHANLNWLTMDSNLFTGTIPPVIGELKNLQLLD 423
+ + + + ++ + P S ++L L M SN + L +LQ +
Sbjct: 466 FTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIW 524
Query: 424 LGGN 427
L N
Sbjct: 525 LHTN 528
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 77.4 bits (191), Expect = 2e-15
Identities = 54/254 (21%), Positives = 95/254 (37%), Gaps = 12/254 (4%)
Query: 55 WNNSMSLCQWTGVTCGRRHQRVTRLDLRNQSIGGPLSPYVGNLSFLRYINLANNGFLGEI 114
+ S+ V + L+L N G + L L+ + +N G
Sbjct: 285 SSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPT---LKLKSLKRLTFTSN-KGGNA 340
Query: 115 PPQIGRLNMLEGLVLSNN--SFSGTIPTNLSRRSNLIELSVDTNYLVGEIPSAIGSLFKL 172
++ L LE L LS N SF G + ++L L + N ++ + S L +L
Sbjct: 341 FSEVD-LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQL 398
Query: 173 ERLFIFHNHITGQLPASI-GNLSSLLAFDVRENILWG-RIDSLVQLRNLRLLDIAFNHFS 230
E L H+++ S+ +L +L+ D+ L +L +L +A N F
Sbjct: 399 EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ 458
Query: 231 GMIPPPIF-NISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNA 289
P IF + +L + LS+ + L A +L +L+ L+ N
Sbjct: 459 ENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRL 517
Query: 290 SRLEMIEFSRNQFS 303
+ L+ I N +
Sbjct: 518 TSLQKIWLHTNPWD 531
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 77.1 bits (190), Expect = 3e-15
Identities = 51/266 (19%), Positives = 96/266 (36%), Gaps = 18/266 (6%)
Query: 96 NLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSVDT 155
L+ + +L + + + + L L N F L +L L+ +
Sbjct: 280 CLTNVSSFSLVSVT-IERVKDFSYNFG-WQHLELVNCKFGQFPTLKLK---SLKRLTFTS 334
Query: 156 NYLVGEIPSAIGSLFKLERLFIFHNHIT--GQLPASIGNLSSLLAFDVRENILWGRIDSL 213
N G S + L LE L + N ++ G S +SL D+ N + +
Sbjct: 335 NKG-GNAFSEVD-LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNF 392
Query: 214 VQLRNLRLLDIAFNHFSGMIPPPIF-NISSLEVISLSENRFTGSLPVDAGVNLPNLRQLS 272
+ L L LD ++ M +F ++ +L + +S L +L L
Sbjct: 393 LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR-VAFNGIFNGLSSLEVLK 451
Query: 273 PNGNNFTGSI-PVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLGTRTA 331
GN+F + P + L ++ S+ Q F+ L +L LNM N L
Sbjct: 452 MAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQL----- 506
Query: 332 NELDFINLLANCSKLERLYFNRNRFQ 357
+ + + L++++ + N +
Sbjct: 507 KSVP-DGIFDRLTSLQKIWLHTNPWD 531
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 75.1 bits (185), Expect = 1e-14
Identities = 52/328 (15%), Positives = 111/328 (33%), Gaps = 21/328 (6%)
Query: 129 LSNNSFSGTIPTNLSRRSNLIELSVDTNYLVGEIPSAIGSLFKLERLFIFHNHITGQLPA 188
+F IP NL + L + N L + S +L+ L + I
Sbjct: 14 CMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDG 70
Query: 189 SIGNLSSLLAFDVRENILWG-RIDSLVQLRNLRLLDIAFNHFSGMIPPPIFNISSLEVIS 247
+ +LS L + N + + + L +L+ L + + + PI ++ +L+ ++
Sbjct: 71 AYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELN 130
Query: 248 LSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEM----IEFSRNQFS 303
++ N + NL NL L + N L ++ + ++ S N +
Sbjct: 131 VAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN 190
Query: 304 GRVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQS 363
+ + L L + NN + + L ++ RL R +G L +
Sbjct: 191 -FIQPGAFKEIRLHKLTLR-NNFDSLNVMKTCIQGL--AGLEVHRLVLGEFRNEGNLEKF 246
Query: 364 MANFSSTIKQIAMGRNRISG------TIPPGIRSHANLNWLTMDSNLFTGTIPPVIGE-- 415
+ + + + R++ I N++ ++ S +
Sbjct: 247 DKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNFG 305
Query: 416 LKNLQLLDLGGNFLQGSIPSSLGNLTLL 443
++L+L++ SL LT
Sbjct: 306 WQHLELVNCKFGQFPTLKLKSLKRLTFT 333
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 73.6 bits (181), Expect = 3e-14
Identities = 55/216 (25%), Positives = 87/216 (40%), Gaps = 11/216 (5%)
Query: 74 QRVTRLDLRNQSIGGPLSPYVGNLSFLRYINLANNG--FLGEIPPQIGRLNMLEGLVLSN 131
+ + RL + G S +L L +++L+ NG F G L+ L LS
Sbjct: 325 KSLKRLTFTSNKGGNAFS--EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSF 382
Query: 132 NSFSGTIPTNLSRRSNLIELSVDTNYLVGEIP-SAIGSLFKLERLFIFHNHITGQLPASI 190
N T+ +N L L + L S SL L L I H H
Sbjct: 383 NGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF 441
Query: 191 GNLSSLLAFDVRENILWGRI--DSLVQLRNLRLLDIAFNHFSGMIPPPIF-NISSLEVIS 247
LSSL + N D +LRNL LD++ + P F ++SSL+V++
Sbjct: 442 NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ-LSPTAFNSLSSLQVLN 500
Query: 248 LSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIP 283
++ N+ S+P L +L+++ + N + S P
Sbjct: 501 MASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 535
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 72.8 bits (179), Expect = 6e-14
Identities = 56/260 (21%), Positives = 95/260 (36%), Gaps = 18/260 (6%)
Query: 74 QRVTRLDLRNQSIGG-PLSPYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNN 132
V+ L + +I Y L +N F +L L+ L ++N
Sbjct: 282 TNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQF------PTLKLKSLKRLTFTSN 335
Query: 133 SFSGTIP-TNLSRRSNLIELSVDTNYL--VGEIPSAIGSLFKLERLFIFHNHITGQLPAS 189
+L +L L + N L G + L+ L + N + + ++
Sbjct: 336 KGGNAFSEVDLP---SLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSN 391
Query: 190 IGNLSSLLAFDVRENILWG--RIDSLVQLRNLRLLDIAFNHFSGMIPPPIF-NISSLEVI 246
L L D + + L + LRNL LDI+ H + IF +SSLEV+
Sbjct: 392 FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR-VAFNGIFNGLSSLEVL 450
Query: 247 SLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRV 306
++ N F + D L NL L + P + ++ S L+++ + NQ
Sbjct: 451 KMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVP 510
Query: 307 SVDFSRLKNLSFLNMGINNL 326
F RL +L + + N
Sbjct: 511 DGIFDRLTSLQKIWLHTNPW 530
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 106 bits (266), Expect = 1e-24
Identities = 69/370 (18%), Positives = 120/370 (32%), Gaps = 39/370 (10%)
Query: 104 NLANNGFLG--EIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSVDTNYLVGE 161
+A F ++P LN E L+LS N ++ L L + + Y
Sbjct: 7 RIAFYRFCNLTQVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLT 63
Query: 162 I-PSAIGSLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRI---DSLVQLR 217
I A +L L L + + I P + L L + L + L+
Sbjct: 64 IDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLK 123
Query: 218 NLRLLDIAFNHFSGMIPPPIF-NISSLEVISLSENRFTGSLPVD-AGVNLPNLRQLSPNG 275
L LD++ N + P F ++SL+ I S N+ + + L S
Sbjct: 124 ALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAA 183
Query: 276 NNFTGSIPVSLSNAS------RLEMIEFSRNQFSGRVSVDFSR------------LKNLS 317
N+ + V LE+++ S N ++ ++ +FS ++
Sbjct: 184 NSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIM 243
Query: 318 FLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMG 377
G +N+ N F L S + L + + + +K + +
Sbjct: 244 GAGFGFHNIKDPDQN--TFAGL--ARSSVRHLDLSHGFVFSLNSRVFETLKD-LKVLNLA 298
Query: 378 RNRISGTIPPGIRSH-ANLNWLTMDSNLFTGTIPPVIGELKNLQLLDLGGN---FLQGSI 433
N+I+ I NL L + NL L + +DL N +Q
Sbjct: 299 YNKIN-KIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQT 357
Query: 434 PSSLGNLTLL 443
L L L
Sbjct: 358 FKFLEKLQTL 367
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 98.3 bits (245), Expect = 4e-22
Identities = 71/389 (18%), Positives = 128/389 (32%), Gaps = 48/389 (12%)
Query: 74 QRVTRLDLRNQSIGGPLSP--YVGNLSFLRYINLANNGFLG-EIPPQIGRLNMLEGLVLS 130
+ L L + + Y NL L ++L+ N + P G+LN L+ + S
Sbjct: 97 FHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFS 156
Query: 131 NNSFSGTIPTNLS--RRSNLIELSVDTNYLVGEIPSAIGSLFK------LERLFIFHNHI 182
+N L + L S+ N L + G LE L + N
Sbjct: 157 SNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGW 216
Query: 183 TGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLRLLDIAFNHFSGMIPPPIF---N 239
T + + N S + SL+ ++ F++ F
Sbjct: 217 TVDITGNFSNAISKS-----------QAFSLILAHHIMGAGFGFHNIK-DPDQNTFAGLA 264
Query: 240 ISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSR 299
SS+ + LS SL L +L+ L+ N + L+++ S
Sbjct: 265 RSSVRHLDLSHGFVF-SLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSY 323
Query: 300 NQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGV 359
N S +F L ++++++ N++ KL+ L N
Sbjct: 324 NLLGELYSSNFYGLPKVAYIDLQKNHIAIIQD------QTFKFLEKLQTLDLRDNAL--- 374
Query: 360 LPQSMANFSSTIKQIAMGRNRISGTIPPGIRSHANLNWLTMDSNLFTG-TIPPVIGELKN 418
+ +F +I I + N++ T+P + N + + N I + + +
Sbjct: 375 ---TTIHFIPSIPDIFLSGNKLV-TLPKINLT---ANLIHLSENRLENLDILYFLLRVPH 427
Query: 419 LQLLDLGGNFLQG----SIPSSLGNLTLL 443
LQ+L L N PS +L L
Sbjct: 428 LQILILNQNRFSSCSGDQTPSENPSLEQL 456
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 92.9 bits (231), Expect = 2e-20
Identities = 58/356 (16%), Positives = 129/356 (36%), Gaps = 27/356 (7%)
Query: 95 GNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLS--RRSNLIELS 152
GN + +N + + + G ++ + RS++ L
Sbjct: 213 GNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLD 272
Query: 153 VDTNYLVGEIPSAIGSLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWG-RID 211
+ ++ +L L+ L + +N I + L +L ++ N+L
Sbjct: 273 LSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSS 332
Query: 212 SLVQLRNLRLLDIAFNHFSGMIPPPIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQL 271
+ L + +D+ NH + + + L+ + L +N T ++ +P++ +
Sbjct: 333 NFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT-TIH-----FIPSIPDI 386
Query: 272 SPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSG-RVSVDFSRLKNLSFLNMGINNLGTRT 330
+GN ++L+ +I S N+ + R+ +L L + N
Sbjct: 387 FLSGNKLVTLPKINLT----ANLIHLSENRLENLDILYFLLRVPHLQILILNQNRF---- 438
Query: 331 ANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFS----STIKQIAMGRNRISGTIP 386
+ + LE+L+ N Q + S ++ + + N ++ ++P
Sbjct: 439 -SSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLN-SLP 496
Query: 387 PGI-RSHANLNWLTMDSNLFTGTIPPVIGELKNLQLLDLGGNFLQGSIPSSLGNLT 441
PG+ L L+++SN T + NL++LD+ N L P +L+
Sbjct: 497 PGVFSHLTALRGLSLNSNRLT-VLSHNDL-PANLEILDISRNQLLAPNPDVFVSLS 550
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 76.4 bits (188), Expect = 6e-15
Identities = 64/398 (16%), Positives = 124/398 (31%), Gaps = 40/398 (10%)
Query: 4 PISIFCCLATLSLSLLLHSHKTICANSNETDRLALLAIK------LQLHDPLGVTSSWNN 57
L +LS + ++ + + + + L + N
Sbjct: 164 CEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGN 223
Query: 58 SMSLCQWTGVTCGRRHQRVTRLDLRNQSIGGPLSPYVGNL--SFLRYINLANNGFLGEIP 115
+ + + +I P L S +R+++L++
Sbjct: 224 FSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNS 283
Query: 116 PQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSVDTNYLVGEIPSAIGSLFKLERL 175
L L+ L L+ N + NL L++ N L S L K+ +
Sbjct: 284 RVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYI 343
Query: 176 FIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLRL-------------- 221
+ NHI + L L D+R+N L I + + ++ L
Sbjct: 344 DLQKNHIAIIQDQTFKFLEKLQTLDLRDNAL-TTIHFIPSIPDIFLSGNKLVTLPKINLT 402
Query: 222 ---LDIAFNHFSGMIPPPIF-NISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNN 277
+ ++ N + + L+++ L++NRF+ P+L QL N
Sbjct: 403 ANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENM 462
Query: 278 FTGSIPVSL-----SNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLGTRTAN 332
+ L S L+++ + N + FS L L L++ N L
Sbjct: 463 LQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTV---- 518
Query: 333 ELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFSST 370
++ + LE L +RN+ P + S
Sbjct: 519 ----LSHNDLPANLEILDISRNQLLAPNPDVFVSLSVL 552
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 63.7 bits (155), Expect = 6e-11
Identities = 52/239 (21%), Positives = 97/239 (40%), Gaps = 25/239 (10%)
Query: 74 QRVTRLDLRNQSIGGPLSPYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNS 133
+V +DL+ I L L+ ++L +N I + + + LS N
Sbjct: 338 PKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNAL-----TTIHFIPSIPDIFLSGNK 392
Query: 134 FSGTIPTNLSRRSNLIELSVDTNYLVG-EIPSAIGSLFKLERLFIFHNHITG-QLPASIG 191
T+P ++ +NLI LS N L +I + + L+ L + N + +
Sbjct: 393 LV-TLPK-INLTANLIHLS--ENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPS 448
Query: 192 NLSSLLAFDVRENILWGRI------DSLVQLRNLRLLDIAFNHFSGMIPPPIF-NISSLE 244
SL + EN+L D L +L++L + N+ + +PP +F ++++L
Sbjct: 449 ENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLN-SLPPGVFSHLTALR 507
Query: 245 VISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFS 303
+SL+ NR T + NL L + N P + L +++ + N+F
Sbjct: 508 GLSLNSNRLTV---LSHNDLPANLEILDISRNQLLAPNPDVFVS---LSVLDITHNKFI 560
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 104 bits (262), Expect = 1e-24
Identities = 70/336 (20%), Positives = 126/336 (37%), Gaps = 22/336 (6%)
Query: 101 RYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSVDTNYLVG 160
R + +P I L L N + +L EL ++ N +
Sbjct: 14 RAVLCHRKR-FVAVPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSA 70
Query: 161 EIPSAIGSLFKLERLFIFHNHITGQLPASI-GNLSSLLAFDVRENILWGRI--DSLVQLR 217
P A +LF L L + N + +P + LS+L D+ EN + + L
Sbjct: 71 VEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKI-VILLDYMFQDLY 128
Query: 218 NLRLLDIAFNHFSGMIPPPIF-NISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGN 276
NL+ L++ N I F ++SLE ++L + T S+P +A +L L L
Sbjct: 129 NLKSLEVGDNDLV-YISHRAFSGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHL 186
Query: 277 NFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANELDF 336
N S RL+++E S + ++ + NL+ L++ NL + +
Sbjct: 187 NINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNL-----TAVPY 241
Query: 337 INLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNRISGTIPPGIRSH-ANL 395
+ + L L + N + + +++I + +++ + P L
Sbjct: 242 -LAVRHLVYLRFLNLSYNPISTIEGSMLHELLR-LQEIQLVGGQLA-VVEPYAFRGLNYL 298
Query: 396 NWLTMDSNLFTGTIPP-VIGELKNLQLLDLGGNFLQ 430
L + N T T+ V + NL+ L L N L
Sbjct: 299 RVLNVSGNQLT-TLEESVFHSVGNLETLILDSNPLA 333
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 94.0 bits (234), Expect = 6e-21
Identities = 67/284 (23%), Positives = 111/284 (39%), Gaps = 12/284 (4%)
Query: 77 TRLDLRNQSIGGPLSPYV-GNLSFLRYINLANNGFLGEIPPQI-GRLNMLEGLVLSNNSF 134
L+L + + P NL LR + L +N L IP + L+ L L +S N
Sbjct: 59 EELELNENIVSA-VEPGAFNNLFNLRTLGLRSNR-LKLIPLGVFTGLSNLTKLDISENKI 116
Query: 135 SGTIPTNLSRRSNLIELSVDTNYLVGEIPSAIGSLFKLERLFIFHNHITGQLPASIGNLS 194
+ NL L V N LV A L LE+L + ++T ++ +L
Sbjct: 117 VILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLH 176
Query: 195 SLLAFDVRENILWG-RIDSLVQLRNLRLLDIAFNHFSGMIPPPIFNISSLEVISLSENRF 253
L+ +R + R S +L L++L+I+ + + P +L +S++
Sbjct: 177 GLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNL 236
Query: 254 TGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRL 313
T ++P A +L LR L+ + N + L RL+ I+ Q + F L
Sbjct: 237 T-AVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGL 295
Query: 314 KNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQ 357
L LN+ N L T ++ + LE L + N
Sbjct: 296 NYLRVLNVSGNQLTTLEE------SVFHSVGNLETLILDSNPLA 333
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 90.2 bits (224), Expect = 1e-19
Identities = 57/293 (19%), Positives = 107/293 (36%), Gaps = 26/293 (8%)
Query: 161 EIPSAIGSLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRI--DSLVQLRN 218
+P I + + L + N I + L ++ ENI+ + + L N
Sbjct: 25 AVPEGIPT--ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIV-SAVEPGAFNNLFN 81
Query: 219 LRLLDIAFNHFSGMIPPPIF-NISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNN 277
LR L + N +IP +F +S+L + +SEN+ L +L NL+ L N+
Sbjct: 82 LRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIV-ILLDYMFQDLYNLKSLEVGDND 139
Query: 278 FTGSIPV-SLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANELDF 336
I + S + LE + + + + S L L L + N+
Sbjct: 140 LV-YISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDY---- 194
Query: 337 INLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNRISGTIPPG-IRSHANL 395
+L+ L + + + + + +++ ++ +P +R L
Sbjct: 195 --SFKRLYRLKVLEISHWPYLDTMT-PNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYL 250
Query: 396 NWLTMDSNLFTGTIPPVI-GELKNLQLLDLGGNFLQGSIP----SSLGNLTLL 443
+L + N + TI + EL LQ + L G L + L L +L
Sbjct: 251 RFLNLSYNPIS-TIEGSMLHELLRLQEIQLVGGQLA-VVEPYAFRGLNYLRVL 301
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 103 bits (258), Expect = 6e-24
Identities = 54/378 (14%), Positives = 115/378 (30%), Gaps = 33/378 (8%)
Query: 77 TRLDLRNQSIGG-PLSPYVGNLSFLRYINLANNGFLGEIPPQ-IGRLNMLEGLVLSNNSF 134
L+L ++ NL+ L+ + + N EI L L L + S
Sbjct: 101 KYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSL 160
Query: 135 SGTIPTNLSRRSNLIELSVDTNYLVGEIPSAIGSLFKLERLFIFHNHITGQLPASIGNLS 194
+L ++ L++ + + L + L + ++ + +
Sbjct: 161 RNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDE 220
Query: 195 SLLAFDVRENILWGRIDSLVQLRNLRLLDIAFNHFSGMIPPPIFNISSLEVISLSENRFT 254
+ R L D +FN + I +S +E + N
Sbjct: 221 VSSPM------------KKLAFRGSVLTDESFNELLK-LLRYILELSEVEFDDCTLNGLG 267
Query: 255 -------GSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVS 307
+ V +R+L + S +++ I ++
Sbjct: 268 DFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPC 327
Query: 308 VDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQ--GVLPQSMA 365
LK+L FL++ N + + L+ L ++N + + +
Sbjct: 328 SFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPS---LQTLVLSQNHLRSMQKTGEILL 384
Query: 366 NFSSTIKQIAMGRNRISGTIPPGIRSHANLNWLTMDSNLFTGTIPPVIGELKNLQLLDLG 425
+ + + + RN +P + + +L + S + I + L++LD+
Sbjct: 385 TLKN-LTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTCI--PQTLEVLDVS 439
Query: 426 GNFLQGSIPSSLGNLTLL 443
N L S L L L
Sbjct: 440 NNNLD-SFSLFLPRLQEL 456
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 97.9 bits (244), Expect = 4e-22
Identities = 54/354 (15%), Positives = 118/354 (33%), Gaps = 18/354 (5%)
Query: 104 NLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSVDTNYLVGEIP 163
+ + IP + ++ L LS N + +L +NL L + ++ +
Sbjct: 11 DGRSRS-FTSIPSGL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEG 67
Query: 164 SAIGSLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILW--GRIDSLVQLRNLRL 221
A SL LE L + NH++ + G LSSL ++ N G L NL+
Sbjct: 68 DAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQT 127
Query: 222 LDIAFNHFSGMIPPPIF-NISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTG 280
L I I F ++SL + + + + ++ ++ L+ + +
Sbjct: 128 LRIGNVETFSEIRRIDFAGLTSLNELEIKALSLR-NYQSQSLKSIRDIHHLTLHLSESAF 186
Query: 281 SIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANELDFI-NL 339
+ + S + +E + + S + T + + L
Sbjct: 187 LLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKL 246
Query: 340 LANCSKLERLYFNRNRFQGVLPQSMANFSS----------TIKQIAMGRNRISGTIPPGI 389
L +L + F+ G+ + + TI+++ + + + +
Sbjct: 247 LRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVY 306
Query: 390 RSHANLNWLTMDSNLFTGTIPPVIGELKNLQLLDLGGNFLQGSIPSSLGNLTLL 443
+ +T++++ LK+L+ LDL N + +
Sbjct: 307 SLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAW 360
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 79.4 bits (196), Expect = 4e-16
Identities = 52/391 (13%), Positives = 116/391 (29%), Gaps = 49/391 (12%)
Query: 77 TRLDL-RNQSIGGPLSPYVGNLSFLRYINLANNGFLGEIPPQ-IGRLNMLEGLVLSNNSF 134
L + ++ L+ L + + L Q + + + L L +
Sbjct: 126 QTLRIGNVETFSEIRRIDFAGLTSLNELEIKAL-SLRNYQSQSLKSIRDIHHLTLHLSES 184
Query: 135 SGTIPTNLSRRSNLIELSVDTNYLVGEIPSAIGSLFKLERLFIFHNHITGQLPASIGNLS 194
+ + S++ L + L S + + + S L
Sbjct: 185 AFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELL 244
Query: 195 SLLAFDVRENILW--------------GRIDSLVQLRNLRLLDIAFNHFSG----MIPPP 236
LL + + + + D + +L + + I H
Sbjct: 245 KLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLST 304
Query: 237 IF-NISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSI---PVSLSNASRL 292
++ + ++ I++ ++ +P +L +L L + N L
Sbjct: 305 VYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSL 363
Query: 293 EMIEFSRNQFS--GRVSVDFSRLKNLSFLNMGINNL--------GTRTANELD----FIN 338
+ + S+N + LKNL+ L++ N L+ I
Sbjct: 364 QTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIR 423
Query: 339 LLANC--SKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNRISGTIPPGIRSHANLN 396
++ C LE L + N + ++++ + RN++ T+P L
Sbjct: 424 VVKTCIPQTLEVLDVSNNNLD-SFSLFLPR----LQELYISRNKLK-TLPDAS-LFPVLL 476
Query: 397 WLTMDSNLFTGTIPPVIGELKNLQLLDLGGN 427
+ + N + L +LQ + L N
Sbjct: 477 VMKISRNQLKSVPDGIFDRLTSLQKIWLHTN 507
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 74.8 bits (184), Expect = 1e-14
Identities = 57/333 (17%), Positives = 116/333 (34%), Gaps = 21/333 (6%)
Query: 4 PISIFCCLATLSLSLLLHSHKTICANSNETDRLALLAIKLQLHDPLGVTS-SWNNSMSLC 62
L+++ L ++ S +K +T S+N + L
Sbjct: 188 LEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLL 247
Query: 63 QWTGVTCGRRHQRVTRL---DLRNQSIGGPLSPYVGNLSFLRYINLANNGFLGEIPPQIG 119
++ T D +R +++ ++
Sbjct: 248 RYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYS 307
Query: 120 RLNMLEGLVLSNNSFSGTIPTNLSRR-SNLIELSVDTNYLVGEI---PSAIGSLFKLERL 175
L ++ + + N+ +P + S+ +L L + N +V E + G+ L+ L
Sbjct: 308 LLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTL 366
Query: 176 FIFHNHIT--GQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLRLLDIAFNHFSGMI 233
+ NH+ + + L +L + D+ N DS +R L+++ ++
Sbjct: 367 VLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIR-VV 425
Query: 234 PPPIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLE 293
I +LEV+ +S N S + LP L++L + N ++P S L
Sbjct: 426 KTCIP--QTLEVLDVSNNNLD-SFSL----FLPRLQELYISRNKLK-TLP-DASLFPVLL 476
Query: 294 MIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNL 326
+++ SRNQ F RL +L + + N
Sbjct: 477 VMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPW 509
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 70.1 bits (172), Expect = 4e-13
Identities = 43/268 (16%), Positives = 86/268 (32%), Gaps = 23/268 (8%)
Query: 96 NLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSVDT 155
+ + + + + L + + T S + ++V+
Sbjct: 260 DCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVEN 319
Query: 156 NYLVGEIPSAIGSLFKLERLFIFHNHIT---GQLPASIGNLSSLLAFDVREN---ILWGR 209
+ + S L LE L + N + + A G SL + +N +
Sbjct: 320 SKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKT 379
Query: 210 IDSLVQLRNLRLLDIAFNHFSGMIPPPIFNISSLEVISLSENRFTGSLPVDAGVNLPNLR 269
+ L+ L+NL LDI+ N F +P + ++LS + L
Sbjct: 380 GEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTCI---PQTLE 434
Query: 270 QLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLGTR 329
L + NN S + L L+ + SRN+ L + + N L +
Sbjct: 435 VLDVSNNNLD-SFSLFLPR---LQELYISRNKLKTLPDASL--FPVLLVMKISRNQLKSV 488
Query: 330 TANELDFINLLANCSKLERLYFNRNRFQ 357
D + L++++ + N +
Sbjct: 489 PDGIFD------RLTSLQKIWLHTNPWD 510
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 100 bits (252), Expect = 7e-24
Identities = 50/352 (14%), Positives = 98/352 (27%), Gaps = 50/352 (14%)
Query: 88 GPLSPYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSN 147
G + + S + + L + + + + +N
Sbjct: 2 GSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHS----AWRQANSNN 57
Query: 148 LIELSVDTNYLVGEIPSAIGSL--FKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENI 205
+ L + L + + Q P LS L +
Sbjct: 58 PQIETRTGRALK-ATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAG 115
Query: 206 LWGRIDSLVQLRNLRLLDIAFNHFSGMIPPPIFNISSLEVISLSENRFTGSLP------- 258
L D++ Q L L +A N +P I +++ L +S+ LP
Sbjct: 116 LMELPDTMQQFAGLETLTLARNPLRA-LPASIASLNRLRELSIRACPELTELPEPLASTD 174
Query: 259 -VDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLS 317
L NL+ L S+P S++N L+ ++ + S + L L
Sbjct: 175 ASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLE 232
Query: 318 FLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMG 377
L+ L C+ L P + + I
Sbjct: 233 ELD-------------------LRGCTALRNY-----------PPIFGGRAPLKRLILKD 262
Query: 378 RNRISGTIPPGIRSHANLNWLTMDSNLFTGTIPPVIGELKNLQLLDLGGNFL 429
+ + T+P I L L + + +P +I +L ++ + +
Sbjct: 263 CSNLL-TLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQ 313
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 60.7 bits (148), Expect = 2e-10
Identities = 25/111 (22%), Positives = 45/111 (40%), Gaps = 1/111 (0%)
Query: 77 TRLDLRNQSIGGPLSPYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSG 136
L +RN + L P + +L L ++L L PP G L+ L+L + S
Sbjct: 209 KSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLL 267
Query: 137 TIPTNLSRRSNLIELSVDTNYLVGEIPSAIGSLFKLERLFIFHNHITGQLP 187
T+P ++ R + L +L + + +PS I L + + +
Sbjct: 268 TLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQ 318
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 102 bits (256), Expect = 1e-23
Identities = 73/324 (22%), Positives = 124/324 (38%), Gaps = 51/324 (15%)
Query: 120 RLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSVDTNYLVGEIPSAIGSLFKLERLFIFH 179
N L + + + T+P L +++ L + N L +P+ +L L +
Sbjct: 38 LNNGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPALPP---ELRTLEVSG 90
Query: 180 NHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLRLLDIAFNHFSGMIPPPIFN 239
N +T LP L L F + +L L L I N + +P
Sbjct: 91 NQLT-SLPVLPPGLLELSIFSNPLT----HLPAL--PSGLCKLWIFGNQLTS-LPV---L 139
Query: 240 ISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSR 299
L+ +S+S+N+ SLP L +L N T S+P+ S L+ + S
Sbjct: 140 PPGLQELSVSDNQLA-SLPA----LPSELCKLWAYNNQLT-SLPMLPSG---LQELSVSD 190
Query: 300 NQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGV 359
NQ + + S L L N N L +L A S L+ L + NR
Sbjct: 191 NQLA-SLPTLPSELYKLWAYN---NRL----------TSLPALPSGLKELIVSGNRLTS- 235
Query: 360 LPQSMANFSSTIKQIAMGRNRISGTIPPGIRSHANLNWLTMDSNLFTGTIPPVIGELKNL 419
LP + +K++ + NR++ ++P + L L++ N T +P + L +
Sbjct: 236 LPVLPSE----LKELMVSGNRLT-SLPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSE 286
Query: 420 QLLDLGGNFLQGSIPSSLGNLTLL 443
++L GN L +L +T
Sbjct: 287 TTVNLEGNPLSERTLQALREITSA 310
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 83.8 bits (207), Expect = 2e-17
Identities = 66/355 (18%), Positives = 108/355 (30%), Gaps = 55/355 (15%)
Query: 74 QRVTRLDLRNQSIGGPLSPYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNS 133
+T L + + + L+ LR + ++ N L +P L L
Sbjct: 61 AHITTLVIPDNN----LTSLPALPPELRTLEVSGN-QLTSLPVLPPGLLELSIFSNPLTH 115
Query: 134 FSGTIPTNLSRRSNLIELSVDTNYLVGEIPSAIGSLFKLERLFIFHNHITGQLPASIGNL 193
S L +L + N L +P L+ L + N + LPA L
Sbjct: 116 LPALP-------SGLCKLWIFGNQL-TSLPVLPPG---LQELSVSDNQLA-SLPALPSEL 163
Query: 194 SSLLAFDVRENILWGRIDSL-VQLRNLRLLDIAFNHFSGMIPPPIFNISSLEVISLSENR 252
L N ++ SL + L+ L ++ N + +P S L + NR
Sbjct: 164 CKL---WAYNN----QLTSLPMLPSGLQELSVSDNQLA-SLPT---LPSELYKLWAYNNR 212
Query: 253 FTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSR 312
T SLP L++L +GN T S+PV S L+ + S N+ + S+
Sbjct: 213 LT-SLP----ALPSGLKELIVSGNRLT-SLPVLPSE---LKELMVSGNRLT---SLP-ML 259
Query: 313 LKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIK 372
L L++ N L L + S + N ++
Sbjct: 260 PSGLLSLSVYRNQLTR-------LPESLIHLSSETTVNLEGNPLS-ERTLQALREITSAP 311
Query: 373 QIAMGRNRISGTIPPGIRSHANLNWLTMDSNLFTGTIPPVIGELKNLQLLDLGGN 427
+ R R L +P GE + G
Sbjct: 312 GYSGPIIRFDMAGASAPRETRAL-----HLAAADWLVPAREGEPAPADRWHMFGQ 361
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 98.2 bits (245), Expect = 1e-22
Identities = 55/326 (16%), Positives = 112/326 (34%), Gaps = 24/326 (7%)
Query: 131 NNSFSGTIPTNLSRRSNLIELSVDTNYLVGEIPSAIGSLFKLERLFIFHNHITGQLPASI 190
I +NL ++ +D +L + + ++ + A +
Sbjct: 6 RQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALL 65
Query: 191 GNLSSLLAFDVRENILWG-RIDSLVQLRNLRLLDIAFNHFSGMIPPPIF-NISSLEVISL 248
+ + ++ + + + ++ L + FN +PP +F N+ L V+ L
Sbjct: 66 DSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVL 124
Query: 249 SENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSV 308
N + SLP N P L LS + NN + + L+ ++ S N+ + V
Sbjct: 125 ERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT---HV 180
Query: 309 DFSRLKNLSFLNMGINNLGTRTANE-LDFINLLAN---------CSKLERLYFNRNRFQG 358
D S + +L N+ N L T ++ ++ N +L L N
Sbjct: 181 DLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTD 240
Query: 359 VLPQSMANFSSTIKQIAMGRNRISGTIPPGI-RSHANLNWLTMDSNLFTGTIPPVIGELK 417
+ N+ + ++ + N + I L L + +N + +
Sbjct: 241 T--AWLLNYPG-LVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIP 295
Query: 418 NLQLLDLGGNFLQGSIPSSLGNLTLL 443
L++LDL N L + + L
Sbjct: 296 TLKVLDLSHNHLL-HVERNQPQFDRL 320
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 96.7 bits (241), Expect = 3e-22
Identities = 56/354 (15%), Positives = 117/354 (33%), Gaps = 34/354 (9%)
Query: 96 NLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSVDT 155
+++ + LN + + N++ L + L+++
Sbjct: 19 YDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLND 78
Query: 156 NYLVGEIPSAIGSLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSL-- 213
+ A +++L++ N I P N+ L + N + SL
Sbjct: 79 LQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN----DLSSLPR 134
Query: 214 ---VQLRNLRLLDIAFNHFSGMIPPPIF-NISSLEVISLSENRFTGSLPVDAGVNLPNLR 269
L L ++ N+ I F +SL+ + LS NR T + + +P+L
Sbjct: 135 GIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLT-HVDLSL---IPSLF 189
Query: 270 QLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLGTR 329
+ + N + +L+ +E ++ S N + V L+ L + NNL
Sbjct: 190 HANVSYNLLS-----TLAIPIAVEELDASHNSIN---VVRGPVNVELTILKLQHNNLTD- 240
Query: 330 TANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNRISGTIPPGI 389
L N L + + N + ++ ++++ + NR+ +
Sbjct: 241 -------TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQR-LERLYISNNRLV-ALNLYG 291
Query: 390 RSHANLNWLTMDSNLFTGTIPPVIGELKNLQLLDLGGNFLQGSIPSSLGNLTLL 443
+ L L + N + + L+ L L N + S+ L L
Sbjct: 292 QPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNL 344
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 89.7 bits (223), Expect = 9e-20
Identities = 57/356 (16%), Positives = 120/356 (33%), Gaps = 33/356 (9%)
Query: 79 LDLRNQSIGGPLSPYVGNLSFLRYINLANNGFLGEIPPQI-GRLNMLEGLVLSNNSFSGT 137
+ + Q+ L+ + + N+ + ++P + +E L L++
Sbjct: 26 VHIDMQTQDVYFGFEDITLNNQKIVTFKNST-MRKLPAALLDSFRQVELLNLNDLQIEEI 84
Query: 138 IPTNLSRRSNLIELSVDTNYLVGEIPSAIGSLFKLERLFIFHNHITGQLPASI-GNLSSL 196
+ + +L + N + P ++ L L + N ++ LP I N L
Sbjct: 85 DTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKL 143
Query: 197 LAFDVRENILWGRIDSLV--QLRNLRLLDIAFNHFSGMIPPPIFNISSLEVISLSENRFT 254
+ N L RI+ +L+ L ++ N + + + I SL ++S N +
Sbjct: 144 TTLSMSNNNL-ERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLS 199
Query: 255 GSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLK 314
+L + +L + N+ + ++ L +++ N +
Sbjct: 200 -TLA-----IPIAVEELDASHNSIN-VVRGPVN--VELTILKLQHNNLTDTAW--LLNYP 248
Query: 315 NLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQI 374
L +++ N L + +LERLY + NR L + +K +
Sbjct: 249 GLVEVDLSYNELEKIMYH------PFVKMQRLERLYISNNRLV-ALNLYGQPIPT-LKVL 300
Query: 375 AMGRNRISGTIPPGIRSHANLNWLTMDSNLFTGTIPPVIGELKNLQLLDLGGNFLQ 430
+ N + + L L +D N T+ L+ L L N
Sbjct: 301 DLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLKL--STHHTLKNLTLSHNDWD 352
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 96.8 bits (241), Expect = 7e-22
Identities = 47/324 (14%), Positives = 98/324 (30%), Gaps = 23/324 (7%)
Query: 121 LNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSVDTNYLVGEIPSAIGSLFKLERLFIFHN 180
N + ++++S + + N+ EL + N L + + KLE L + N
Sbjct: 9 GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN 68
Query: 181 HITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLRLLDIAFNHFSGMIPPPIFNI 240
+ + +LS+L D+ N + L+ ++ L A N+ S +
Sbjct: 69 VLYE--TLDLESLSTLRTLDLNNN----YVQELLVGPSIETLHAANNNIS-RVSCSRG-- 119
Query: 241 SSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTG-SIPVSLSNASRLEMIEFSR 299
+ I L+ N+ T L ++ L N + +++ LE +
Sbjct: 120 QGKKNIYLANNKIT-MLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY 178
Query: 300 NQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGV 359
N V L L++ N L + + + + N+ +
Sbjct: 179 NFIY-DVKGQVV-FAKLKTLDLSSNKLAFMGPE-------FQSAAGVTWISLRNNKLV-L 228
Query: 360 LPQSMANFSSTIKQIAMGRNRISGTIPPGIRSHANLNWLTMDSNLFTGTIPPVIGELKNL 419
+ +++ + ++ + N S N T+ E
Sbjct: 229 IEKALRFSQN-LEHFDLRGNGFHCGTLRDFFSK-NQRVQTVAKQTVKKLTGQNEEECTVP 286
Query: 420 QLLDLGGNFLQGSIPSSLGNLTLL 443
L G + L L
Sbjct: 287 TLGHYGAYCCEDLPAPFADRLIAL 310
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 93.0 bits (231), Expect = 1e-20
Identities = 46/348 (13%), Positives = 108/348 (31%), Gaps = 21/348 (6%)
Query: 95 GNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSVD 154
N + + + ++ + ++ L LS N S +L+ + L L++
Sbjct: 7 QNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLS 66
Query: 155 TNYLVGEIPSAIGSLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLV 214
+N L + SL L L + +N++ + S+ N + R+
Sbjct: 67 SNVLYE--TLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNI-SRVSCSR 118
Query: 215 QLRNLRLLDIAFNHFSGMIPPPIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPN 274
+ + + +A N + + S ++ + L N + + L L+
Sbjct: 119 -GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQ 177
Query: 275 GNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANEL 334
N + ++L+ ++ S N+ + + +F ++++++ N L
Sbjct: 178 YNFIY-DVK-GQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLVL------ 228
Query: 335 DFINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNRISGTIPPGIRSHAN 394
L LE N F + + + ++ +A + +
Sbjct: 229 -IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVA--KQTVKKLTGQNEEECTV 285
Query: 395 LNWLTMDSNLFTGTIPPVIGELKNLQLLDLGGNFLQGSIPSSLGNLTL 442
+ P L L+ + QGS L
Sbjct: 286 PTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERE 333
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 92.2 bits (229), Expect = 2e-20
Identities = 52/376 (13%), Positives = 110/376 (29%), Gaps = 29/376 (7%)
Query: 74 QRVTRLDLRNQSIGGPLSPYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNS 133
R + + S+ L+ + ++ ++L+ N + LE L LS+N
Sbjct: 10 NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV 69
Query: 134 FSGTIPTNLSRRSNLIELSVDTNYLVGEIPSAIGSLFKLERLFIFHNHITGQLPASIGNL 193
T+ L S L L ++ NY+ + +E L +N+I+ ++ S
Sbjct: 70 LYETLD--LESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNIS-RVSCSR--G 119
Query: 194 SSLLAFDVRENILWG-RIDSLVQLRNLRLLDIAFNHFSGMIPPPIF-NISSLEVISLSEN 251
+ N + R ++ LD+ N + + + +LE ++L N
Sbjct: 120 QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179
Query: 252 RFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFS 311
V V L+ L + N + +A+ + I N+ +
Sbjct: 180 FIYD---VKGQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALR 234
Query: 312 RLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTI 371
+NL ++ N T + + +++ + + L +
Sbjct: 235 FSQNLEHFDLRGNGFHCGTLR-----DFFSKNQRVQTVAKQTVKK---LTGQNEEECTVP 286
Query: 372 KQIAMGRNRISGTIPPGIRSHANL----NWLTMDSNLFTGTIPPVIGELKNLQLLDLGGN 427
G P L + L T + + +D
Sbjct: 287 TLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKE 346
Query: 428 FLQGSIPSSLGNLTLL 443
+ I
Sbjct: 347 QYRTVIDQVTLRKQAK 362
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 77.2 bits (190), Expect = 2e-15
Identities = 43/295 (14%), Positives = 86/295 (29%), Gaps = 15/295 (5%)
Query: 74 QRVTRLDLRNQSIGGPLSPYVGNLSFLRYINLANNGFLGEIPPQ--IGRLNMLEGLVLSN 131
Q + L N I G S ++Y++L N + + + LE L L
Sbjct: 120 QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLN-EIDTVNFAELAASSDTLEHLNLQY 178
Query: 132 NSFSGTIPTNLSRRSNLIELSVDTNYLVGEIPSAIGSLFKLERLFIFHNHITGQLPASIG 191
N + + + L L + +N L + S + + + +N + + ++
Sbjct: 179 NFIY-DVKGQVVF-AKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALR 234
Query: 192 NLSSLLAFDVRENILWGRIDSLVQLRNLRLLDIAFNHFSGMIPPPIFNISSLEVISLSEN 251
+L FD+R N +N R+ +A + + +
Sbjct: 235 FSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAY 294
Query: 252 RFTGSLPVDAGVNLPNLR----QLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVS 307
LP L L+ L + T + N +R I+ + Q+ +
Sbjct: 295 CCE-DLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRTVID 353
Query: 308 VDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQ 362
R + L L + A + + Q +
Sbjct: 354 QVTLRKQAKITLEQKKKAL---DEQVSNGRRAHAELDGTLQQAVGQIELQHATEE 405
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 47.1 bits (112), Expect = 7e-06
Identities = 24/163 (14%), Positives = 60/163 (36%), Gaps = 17/163 (10%)
Query: 281 SIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLL 340
+I N +R ++ + + + ++ N+ L++ N L +A + L
Sbjct: 1 AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAAD------L 54
Query: 341 ANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNRISGTIPPGIRSHANLNWLTM 400
A +KLE L + N L + + S+ ++ + + N + + G ++ L
Sbjct: 55 APFTKLELLNLSSNVLYETLD--LESLST-LRTLDLNNNYVQ-ELLVG----PSIETLHA 106
Query: 401 DSNLFTGTIPPVIGELKNLQLLDLGGNFLQGSIPSSLGNLTLL 443
+N + + + + + L N + G + +
Sbjct: 107 ANNNIS-RVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRV 146
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 96.2 bits (240), Expect = 1e-21
Identities = 63/383 (16%), Positives = 103/383 (26%), Gaps = 75/383 (19%)
Query: 90 LSPYVGNLSFLRYINLANNGFLGEIPPQIGRL-------------NMLEGLVLSNNSFSG 136
+ N+ A + + PP G L L+N S
Sbjct: 26 MPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLS- 84
Query: 137 TIPTNLSRRSNLIELSVDTNYLVGEIPSAIGSLFKLERLFIFHNHITGQLPA-------- 188
++P +L L N L E+P SL L ++ P
Sbjct: 85 SLPELP---PHLESLVASCNSLT-ELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSN 140
Query: 189 -------SIGNLSSLLAFDVRENILWGRIDSL-VQLRNLRLLDIAFNHFSGMIPPPIFNI 240
+ N S L DV N + L +L + N P + N+
Sbjct: 141 NQLEKLPELQNSSFLKIIDVDNN----SLKKLPDLPPSLEFIAAGNNQLE--ELPELQNL 194
Query: 241 SSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRN 300
L I N LP +L + N L N L I N
Sbjct: 195 PFLTAIYADNNSLK-KLP----DLPLSLESIVAGNNILE--ELPELQNLPFLTTIYADNN 247
Query: 301 QFSGRVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVL 360
+ L+ L+ + + +L L + + L+ + +
Sbjct: 248 LLK-TLPDLPPSLEALNVRDNYLTDL----------PELPQSLTFLDVSENIFSGLSELP 296
Query: 361 PQSMANFSSTIKQIAMGRNRISGTIPPGIRSHANLNWLTMDSNLFTGTIPPVIGELKNLQ 420
P + + N I ++ +L L + +N +P L+
Sbjct: 297 PN--------LYYLNASSNEIR-SLCDLPP---SLEELNVSNNKLI-ELPA---LPPRLE 340
Query: 421 LLDLGGNFLQGSIPSSLGNLTLL 443
L N L +P NL L
Sbjct: 341 RLIASFNHLA-EVPELPQNLKQL 362
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 89.3 bits (222), Expect = 2e-19
Identities = 67/415 (16%), Positives = 123/415 (29%), Gaps = 84/415 (20%)
Query: 72 RHQRVTRLDLRNQSIGGPLSPYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSN 131
++ L+L N + L +L + + N L E+P L L +
Sbjct: 69 LDRQAHELELNNLGLS-SLPELPPHL---ESLVASCNS-LTELPELPQSLKSLLVDNNNL 123
Query: 132 NSFSGTIPTNLSRRSNLIELSVDTNYLVGEIPSAIGSLFKLERLFIFHNHITGQLPASIG 191
+ S P L L V N L ++P + + L+ + + +N + +LP
Sbjct: 124 KALSDLPP-------LLEYLGVSNNQLE-KLPE-LQNSSFLKIIDVDNNSLK-KLPDLPP 173
Query: 192 NLSSLLAFDVRENILWGRIDSLVQLRNLRLLDIAFNHFSGMIPPPIFNISSLEVISLSEN 251
+L + N L + L L L + N + SLE I N
Sbjct: 174 SLEFI---AAGNNQL-EELPELQNLPFLTAIYADNNSLKKLPD----LPLSLESIVAGNN 225
Query: 252 RFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFS 311
LP NLP L + + N ++P + LE + N + +
Sbjct: 226 ILE-ELPELQ--NLPFLTTIYADNNLLK-TLPDLPPS---LEALNVRDNYLT-DLPELPQ 277
Query: 312 RLKNLSFLNMGIN-------NLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQSM 364
L L + NL A+ + +L LE L + N+ LP
Sbjct: 278 SLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALP 336
Query: 365 ANFSSTIKQIAMGRNRISGTIPPGIRSHANLNWLTMDSNLFTGTIPPVIG---------- 414
++++ N ++ +P NL L ++ N P +
Sbjct: 337 PR----LERLIASFNHLA-EVPELP---QNLKQLHVEYNPLR-EFPDIPESVEDLRMNSH 387
Query: 415 --------------------------ELKNLQLLDLGGNFLQGSIPSSLGNLTLL 443
++++ L + + + L
Sbjct: 388 LAEVPELPQNLKQLHVETNPLREFPDIPESVEDLRMNSERVVDPYEFAHETTDKL 442
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 83.9 bits (208), Expect = 1e-17
Identities = 59/315 (18%), Positives = 113/315 (35%), Gaps = 47/315 (14%)
Query: 139 PTNLSRRSNLIELSVDTNYLVGEIPSAIGSLFKLERLFIFHNHITGQLPASIGNLSSLLA 198
P N+S L E ++ L E+P ++ + + P G +
Sbjct: 5 PRNVSNT-FLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAV 62
Query: 199 FDVRENILWG---------RIDSL-VQLRNLRLLDIAFNHFSGMIPPPIFNISSLEVISL 248
+R+ + + SL +L L + N + +P ++ SL V +
Sbjct: 63 SRLRDCLDRQAHELELNNLGLSSLPELPPHLESLVASCNSLT-ELPELPQSLKSLLVDNN 121
Query: 249 SENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSV 308
+ + P L L + N +P L N+S L++I+ N ++
Sbjct: 122 NLKALSD--------LPPLLEYLGVSNNQLE-KLP-ELQNSSFLKIIDVDNNSLK-KLPD 170
Query: 309 DFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFS 368
L+ ++ N N+L+ + L N L +Y + N + LP +
Sbjct: 171 LPPSLEFIAAGN-----------NQLEELPELQNLPFLTAIYADNNSLK-KLPDLPLS-- 216
Query: 369 STIKQIAMGRNRISGTIPPGIRSHANLNWLTMDSNLFTGTIPPVIGELKNLQLLDLGGNF 428
++ I G N + P +++ L + D+NL T+P + L+ L + D
Sbjct: 217 --LESIVAGNNIL--EELPELQNLPFLTTIYADNNLLK-TLPDLPPSLEALNVRDNYLT- 270
Query: 429 LQGSIPSSLGNLTLL 443
+P +LT L
Sbjct: 271 ---DLPELPQSLTFL 282
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 58.1 bits (141), Expect = 2e-09
Identities = 56/260 (21%), Positives = 84/260 (32%), Gaps = 57/260 (21%)
Query: 77 TRLDLRNQSIGGPLSPYVGNLSFLRYINLANNGFLGEIPPQIGRLNM------------- 123
+ N + P + NL FL I NN L +P L
Sbjct: 218 ESIVAGNNILEEL--PELQNLPFLTTIYADNN-LLKTLPDLPPSLEALNVRDNYLTDLPE 274
Query: 124 ----LEGLVLSNNSFSG--TIPTNLSR--------------RSNLIELSVDTNYLVGEIP 163
L L +S N FSG +P NL +L EL+V N L+ E+P
Sbjct: 275 LPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELP 333
Query: 164 SAIGSLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLRLLD 223
+ +LERL NH+ ++P NL L V N L D + +LR+
Sbjct: 334 ALPP---RLERLIASFNHLA-EVPELPQNLKQL---HVEYNPLREFPDIPESVEDLRM-- 384
Query: 224 IAFNHFSGMIPPPIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIP 283
N +P +L+ + + N P ++ L N
Sbjct: 385 ---NSHLAEVPE---LPQNLKQLHVETNPLR-EFPD----IPESVEDLRMNSERVVDPYE 433
Query: 284 VSLSNASRLEMIEFSRNQFS 303
+ +LE F +
Sbjct: 434 FAHETTDKLEDDVFEHHHHH 453
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 94.3 bits (235), Expect = 1e-21
Identities = 50/324 (15%), Positives = 101/324 (31%), Gaps = 69/324 (21%)
Query: 121 LNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSVDTNYLVGEIPSAIGSLFKLERLFIFHN 180
N + ++++S + + N+ EL + N L + + KLE L + N
Sbjct: 9 GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN 68
Query: 181 HITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLRLLDIAFNHFSGMIPPPIFNI 240
+ + +LS+L D+ N + L+ ++ L A N+ S +
Sbjct: 69 VLYE--TLDLESLSTLRTLDLNNN----YVQELLVGPSIETLHAANNNIS-RVSCSRG-- 119
Query: 241 SSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRN 300
+ I L+ N+ T L ++ L N +
Sbjct: 120 QGKKNIYLANNKIT-MLRDLDEGCRSRVQYLDLKLNEID----------------TVNFA 162
Query: 301 QFSGRVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVL 360
+ + L LN+ N + + +KL+ L + N+
Sbjct: 163 EL-------AASSDTLEHLNLQYNFIYD--------VKGQVVFAKLKTLDLSSNKLA--- 204
Query: 361 PQSMANFSSTIKQIAMGRNRISGTIPPGIRSHANLNWLTMDSNLFTGTIPPVIGELKNLQ 420
+ P +S A + W+++ +N I + +NL+
Sbjct: 205 -----------------------FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLE 240
Query: 421 LLDLGGNFLQ-GSIPSSLGNLTLL 443
DL GN G++ +
Sbjct: 241 HFDLRGNGFHCGTLRDFFSKNQRV 264
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 83.1 bits (206), Expect = 8e-18
Identities = 42/284 (14%), Positives = 95/284 (33%), Gaps = 22/284 (7%)
Query: 74 QRVTRLDLRNQSIGGPLSPYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNS 133
R + + S+ L+ + ++ ++L+ N + LE L LS+N
Sbjct: 10 NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV 69
Query: 134 FSGTIPTNLSRRSNLIELSVDTNYLVGEIPSAIGSLFKLERLFIFHNHITGQLPASIGNL 193
+L S L L ++ NY+ + +E L +N+I+ ++ S
Sbjct: 70 LYE--TLDLESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNIS-RVSCSR--G 119
Query: 194 SSLLAFDVRENILWG-RIDSLVQLRNLRLLDIAFNHFSGMIPPPIF-NISSLEVISLSEN 251
+ N + R ++ LD+ N + + + +LE ++L N
Sbjct: 120 QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179
Query: 252 RFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFS 311
V V L+ L + N + +A+ + I N+ +
Sbjct: 180 FIYD---VKGQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALR 234
Query: 312 RLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNR 355
+NL ++ N + + + +++ + +
Sbjct: 235 FSQNLEHFDLRGNGF-----HCGTLRDFFSKNQRVQTVAKQTVK 273
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 50.8 bits (122), Expect = 4e-07
Identities = 31/180 (17%), Positives = 56/180 (31%), Gaps = 26/180 (14%)
Query: 281 SIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLGTRTA--------- 331
+I N +R ++ + + + ++ N+ L++ N L +A
Sbjct: 1 AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60
Query: 332 -------NELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNRISGT 384
N L L + S L L N N Q L +I+ + N IS
Sbjct: 61 ELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQ-ELLV-----GPSIETLHAANNNIS-R 113
Query: 385 IPPGIRSHANLNWLTMDSNLFTGTIPPVIGELKNLQLLDLGGNFLQG-SIPSSLGNLTLL 443
+ + + +N T G +Q LDL N + + + L
Sbjct: 114 VSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTL 171
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 48.8 bits (117), Expect = 1e-06
Identities = 33/177 (18%), Positives = 60/177 (33%), Gaps = 24/177 (13%)
Query: 74 QRVTRLDLRNQSIGG-PLSPYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNN 132
RV LDL+ I + + L ++NL N F+ ++ Q+ L+ L LS+N
Sbjct: 144 SRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN-FIYDVKGQVV-FAKLKTLDLSSN 201
Query: 133 SFSGTIPTNLSRRSNLIELSVDTNYLVGEIPSAIGSLFKLERLFIFHNHIT-GQLPASIG 191
+ + + + +S+ N LV I A+ LE + N G L
Sbjct: 202 KLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFS 259
Query: 192 NLSSLLAFDVR-------ENILWGRIDSLVQLRNL-----------RLLDIAFNHFS 230
+ + +N + +L RL+ + +H
Sbjct: 260 KNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALGHHHHH 316
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 95.8 bits (238), Expect = 2e-21
Identities = 56/354 (15%), Positives = 117/354 (33%), Gaps = 34/354 (9%)
Query: 96 NLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSVDT 155
+++ + LN + + N++ L + L+++
Sbjct: 25 YDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLND 84
Query: 156 NYLVGEIPSAIGSLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSL-- 213
+ A +++L++ N I P N+ L + N + SL
Sbjct: 85 LQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERN----DLSSLPR 140
Query: 214 ---VQLRNLRLLDIAFNHFSGMIPPPIF-NISSLEVISLSENRFTGSLPVDAGVNLPNLR 269
L L ++ N+ I F +SL+ + LS NR T + + +P+L
Sbjct: 141 GIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLT-HVDLSL---IPSLF 195
Query: 270 QLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLGTR 329
+ + N + +L+ +E ++ S N + V L+ L + NNL
Sbjct: 196 HANVSYNLLS-----TLAIPIAVEELDASHNSIN---VVRGPVNVELTILKLQHNNLTD- 246
Query: 330 TANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNRISGTIPPGI 389
L N L + + N + ++ ++++ + NR+ +
Sbjct: 247 -------TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQR-LERLYISNNRLV-ALNLYG 297
Query: 390 RSHANLNWLTMDSNLFTGTIPPVIGELKNLQLLDLGGNFLQGSIPSSLGNLTLL 443
+ L L + N + + L+ L L N + S+ L L
Sbjct: 298 QPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNL 350
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 94.6 bits (235), Expect = 5e-21
Identities = 54/318 (16%), Positives = 111/318 (34%), Gaps = 25/318 (7%)
Query: 128 VLSNNSFSGTIPTNLSRRSNLIELSVDTNYLVGEIPSAIGSLFKLERLFIFHNHITGQLP 187
V I +NL ++ +D +L + + ++ +
Sbjct: 9 VKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPA 68
Query: 188 ASIGNLSSLLAFDVRENILWG-RIDSLVQLRNLRLLDIAFNHFSGMIPPPIF-NISSLEV 245
A + + + ++ + + + ++ L + FN +PP +F N+ L V
Sbjct: 69 ALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTV 127
Query: 246 ISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGR 305
+ L N + SLP N P L LS + NN + + L+ ++ S N+ +
Sbjct: 128 LVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-- 184
Query: 306 VSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQSMA 365
VD S + +L N+ N L T LA +E L + N V
Sbjct: 185 -HVDLSLIPSLFHANVSYNLLST-----------LAIPIAVEELDASHNSINVVRGPVNV 232
Query: 366 NFSSTIKQIAMGRNRISGTIPPGIRSHANLNWLTMDSNLFTGTIPPVIGELKNLQLLDLG 425
+ + + N + T + ++ L + + N + +++ L+ L +
Sbjct: 233 E----LTILKLQHNNL--TDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYIS 286
Query: 426 GNFLQGSIPSSLGNLTLL 443
N L ++ + L
Sbjct: 287 NNRLV-ALNLYGQPIPTL 303
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 76.1 bits (187), Expect = 5e-15
Identities = 49/234 (20%), Positives = 87/234 (37%), Gaps = 22/234 (9%)
Query: 95 GNLSFLRYINLANNGFLGEIPPQIGR-LNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSV 153
N L ++++NN L I + L+ L LS+N + + + +L +V
Sbjct: 144 HNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIP---SLFHANV 199
Query: 154 DTNYLVGEIPSAIGSLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSL 213
N L S + +E L HN I L+ L ++ N L L
Sbjct: 200 SYNLL-----STLAIPIAVEELDASHNSINVVRGPVNVELTIL---KLQHNNL-TDTAWL 250
Query: 214 VQLRNLRLLDIAFNHFSGMIPPPIF-NISSLEVISLSENRFTGSLPVDAGVNLPNLRQLS 272
+ L +D+++N I F + LE + +S NR +L + +P L+ L
Sbjct: 251 LNYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRLV-ALNLYGQ-PIPTLKVLD 307
Query: 273 PNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNL 326
+ N+ + + RLE + N ++ S L L + N+
Sbjct: 308 LSHNHLL-HVERNQPQFDRLENLYLDHNSIV---TLKLSTHHTLKNLTLSHNDW 357
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 91.0 bits (226), Expect = 6e-20
Identities = 60/350 (17%), Positives = 124/350 (35%), Gaps = 35/350 (10%)
Query: 124 LEGLVLSNNSFSGTIPTNLSRRSNLIELSVDTNYLVGEIPS-AIGSLFKLERLFIFHNHI 182
+ + LS NS + T+ SR +L L V+ I + L L L + +N
Sbjct: 32 VNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQF 91
Query: 183 TGQLPASI-GNLSSLLAFDVRENILWGRI---DSLVQLRNLRLLDIAFNHFSGMIPPPIF 238
QL L++L + + L G + + L +L +L + N+ + P F
Sbjct: 92 L-QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFF 150
Query: 239 -NISSLEVISLSENRFTGSLPVDA----------GVNLPNLRQLSPNGNNFTGSIPVSLS 287
N+ V+ L+ N+ S+ + + L ++ N +
Sbjct: 151 LNMRRFHVLDLTFNKVK-SICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPF 209
Query: 288 NASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLA------ 341
+ + ++ S N F ++ F + + I + + N
Sbjct: 210 KNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTF 269
Query: 342 ---NCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNRISGTIPPGI-RSHANLNW 397
S ++ ++++ +L ++F+ +Q+ + +N I+ I +L
Sbjct: 270 KGLEASGVKTCDLSKSKIFALLKSVFSHFTDL-EQLTLAQNEIN-KIDDNAFWGLTHLLK 327
Query: 398 LTMDSNLFTGTIPPVIGELKNLQLLDLGGNFLQGSIP----SSLGNLTLL 443
L + N + L L++LDL N ++ ++ L NL L
Sbjct: 328 LNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIR-ALGDQSFLGLPNLKEL 376
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 75.2 bits (185), Expect = 7e-15
Identities = 79/407 (19%), Positives = 144/407 (35%), Gaps = 52/407 (12%)
Query: 62 CQWTGVTC-GRRHQRV-------TRLDLRNQSIGGPLSPYV-GNLSFLRYINLANNGFLG 112
C R +V +DL SI L+ L L+++ +
Sbjct: 10 VIGYNAICINRGLHQVPELPAHVNYVDLSLNSIAE-LNETSFSRLQDLQFLKVEQQTPGL 68
Query: 113 EIPPQI-GRLNMLEGLVLSNNSFSGTIPTN-LSRRSNLIELSVDTNYLVGEI--PSAIGS 168
I L+ L L L N F + T + +NL L++ L G + +
Sbjct: 69 VIRNNTFRGLSSLIILKLDYNQFL-QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKP 127
Query: 169 LFKLERLFIFHNHITGQLPASI-GNLSSLLAFDVREN-----------ILWGRIDSLVQL 216
L LE L + N+I PAS N+ D+ N G+ +L++L
Sbjct: 128 LTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRL 187
Query: 217 RNLRLLDIAFNHFSGMIPPPIFNISSLEVISLSENRFTGSLP--VDAGVNLPNLRQLSPN 274
++ L D+ F +S+ + LS N F S+ + ++ L +
Sbjct: 188 SSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILS 247
Query: 275 GNN-----FTGSIPVSLSN-------ASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMG 322
+ F + N AS ++ + S+++ + FS +L L +
Sbjct: 248 NSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLA 307
Query: 323 INNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNRIS 382
N + N++D N + L +L ++N + + N ++ + + N I
Sbjct: 308 QNEI-----NKID-DNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDK-LEVLDLSYNHIR 360
Query: 383 GTIPPGIRSH-ANLNWLTMDSNLFTGTIPPVI-GELKNLQLLDLGGN 427
+ NL L +D+N ++P I L +LQ + L N
Sbjct: 361 -ALGDQSFLGLPNLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 405
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 60.9 bits (148), Expect = 3e-10
Identities = 34/236 (14%), Positives = 70/236 (29%), Gaps = 42/236 (17%)
Query: 218 NLRLLDIAFNHFSGMIPPPIF-NISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGN 276
++ +D++ N + + F + L+ + + + + + L +L L + N
Sbjct: 31 HVNYVDLSLNSIA-ELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89
Query: 277 NFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANELDF 336
F + F+ L NL L + NL + F
Sbjct: 90 QFL-QLETGA-----------------------FNGLANLEVLTLTQCNLDGAVLSGNFF 125
Query: 337 INLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNRISGTIPPGIRSHANLN 396
L + LE L N + + P S + + N++ +I +
Sbjct: 126 KPL----TSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK-SICEEDLLNFQGK 180
Query: 397 WLT-----------MDSNLFTGTIPPVIGELKNLQLLDLGGNFLQGSIPSSLGNLT 441
T M+ + ++ LDL GN + S+ +
Sbjct: 181 HFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAI 236
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 49.0 bits (117), Expect = 2e-06
Identities = 41/230 (17%), Positives = 81/230 (35%), Gaps = 31/230 (13%)
Query: 96 NLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSVDT 155
LS + ++ E + + L LS N F ++ ++
Sbjct: 186 RLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLI 245
Query: 156 NYLVGEIPSAIGS---------------LFKLERLFIFHNHITGQLPASI-GNLSSLLAF 199
+ S+ G ++ + + I L S+ + + L
Sbjct: 246 LSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIF-ALLKSVFSHFTDLEQL 304
Query: 200 DVRENILWGRIDSL-----VQLRNLRLLDIAFNHFSGMIPPPIF-NISSLEVISLSENRF 253
+ +N I+ + L +L L+++ N I +F N+ LEV+ LS N
Sbjct: 305 TLAQN----EINKIDDNAFWGLTHLLKLNLSQNFLG-SIDSRMFENLDKLEVLDLSYNHI 359
Query: 254 TGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVS-LSNASRLEMIEFSRNQF 302
+L + + LPNL++L+ + N S+P + L+ I N +
Sbjct: 360 R-ALGDQSFLGLPNLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPW 407
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 86.6 bits (215), Expect = 5e-19
Identities = 66/340 (19%), Positives = 119/340 (35%), Gaps = 53/340 (15%)
Query: 99 FLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSVDTNYL 158
LR + ++ G L ++P + L L NN + + NL L + N +
Sbjct: 32 HLRVVQCSDLG-LEKVPKDLPPD--TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKI 88
Query: 159 VGEIPSAIGSLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRN 218
P A L KLERL++ N + +LP + +
Sbjct: 89 SKISPGAFAPLVKLERLYLSKNQLK-ELPEKM-------------------------PKT 122
Query: 219 LRLLDIAFNHFSGMIPPPIF-NISSLEVISLSENRFT-GSLPVDAGVNLPNLRQLSPNGN 276
L+ L + N + + +F ++ + V+ L N + A + L +
Sbjct: 123 LQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT 181
Query: 277 NFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANELDF 336
N T +IP L L + N+ + + L NL+ L + N++
Sbjct: 182 NIT-TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDN----- 233
Query: 337 INLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNRISGTIPPG-------I 389
LAN L L+ N N+ +P +A+ I+ + + N IS I
Sbjct: 234 -GSLANTPHLRELHLNNNKLV-KVPGGLADHKY-IQVVYLHNNNIS-AIGSNDFCPPGYN 289
Query: 390 RSHANLNWLTMDSN-LFTGTIPPVI-GELKNLQLLDLGGN 427
A+ + +++ SN + I P + + LG
Sbjct: 290 TKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 82.4 bits (204), Expect = 1e-17
Identities = 56/316 (17%), Positives = 107/316 (33%), Gaps = 38/316 (12%)
Query: 62 CQWTGVTCGRRH---------QRVTRLDLRNQSIGGPLSPYV-GNLSFLRYINLANNGFL 111
C V C LDL+N I + NL L + L NN +
Sbjct: 31 CHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITE-IKDGDFKNLKNLHTLILINNK-I 88
Query: 112 GEIPPQIGR-LNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSVDTNYLVGEIPSAIGSLF 170
+I P L LE L LS N +P + + L EL V N + S L
Sbjct: 89 SKISPGAFAPLVKLERLYLSKNQLK-ELPEKMPK--TLQELRVHENEITKVRKSVFNGLN 145
Query: 171 KLERLFIFHNHITGQL--PASIGNLSSLLAFDVRENILWGRIDSLVQ--LRNLRLLDIAF 226
++ + + N + + + L + + I ++ Q +L L +
Sbjct: 146 QMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT----NITTIPQGLPPSLTELHLDG 201
Query: 227 NHFSGMIPPPIF-NISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVS 285
N + + +++L + LS N + ++ + N P+LR+L N N +P
Sbjct: 202 NKIT-KVDAASLKGLNNLAKLGLSFNSIS-AVDNGSLANTPHLRELHLNNNKLV-KVPGG 258
Query: 286 LSNASRLEMIEFSRNQFSG------RVSVDFSRLKNLSFLNMGINNLGTRTANELDFINL 339
L++ ++++ N S ++ + S +++ N + F +
Sbjct: 259 LADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCV 318
Query: 340 LANCSKLERLYFNRNR 355
+ +
Sbjct: 319 ----YVRAAVQLGNYK 330
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 77.0 bits (190), Expect = 8e-16
Identities = 47/246 (19%), Positives = 94/246 (38%), Gaps = 30/246 (12%)
Query: 211 DSLVQLRNLRLLDIAFNHFSGMIPPPIF-NISSLEVISLSENRFTGSLPVDAGVNLPNLR 269
L+NL L + N S I P F + LE + LS+N+ LP L+
Sbjct: 70 GDFKNLKNLHTLILINNKIS-KISPGAFAPLVKLERLYLSKNQLK-ELPEKM---PKTLQ 124
Query: 270 QLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQF-SGRVSVD-FSRLKNLSFLNMGINNLG 327
+L + N T + +++ ++E N S + F +K LS++ + N+
Sbjct: 125 ELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT 184
Query: 328 TRTANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNRISGTIPP 387
T L L+ + N+ V S+ ++ + ++ + N IS +
Sbjct: 185 TIPQGLP---------PSLTELHLDGNKITKVDAASLKGLNN-LAKLGLSFNSIS-AVDN 233
Query: 388 GI-RSHANLNWLTMDSNLFTGTIPPVIGELKNLQLLDLGGN---------FLQGSIPSSL 437
G + +L L +++N +P + + K +Q++ L N F +
Sbjct: 234 GSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKK 292
Query: 438 GNLTLL 443
+ + +
Sbjct: 293 ASYSGV 298
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 85.4 bits (212), Expect = 9e-19
Identities = 48/260 (18%), Positives = 100/260 (38%), Gaps = 14/260 (5%)
Query: 127 LVLSNNSFSGTIPTNLSRRSNLIELSVDTNYLVGEIPSAIGSLFKLERLFIFHNHITGQ- 185
+ ++ + ++PT + S+ L +++N L L +L +L + N ++ +
Sbjct: 12 IRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKG 68
Query: 186 -LPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLRLLDIAFNHFSGMIPPPIF-NISSL 243
S +SL D+ N + + + L L LD ++ M +F ++ +L
Sbjct: 69 CCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL 128
Query: 244 EVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSI-PVSLSNASRLEMIEFSRNQF 302
+ +S L +L L GN+F + P + L ++ S+ Q
Sbjct: 129 IYLDISHTHTR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL 187
Query: 303 SGRVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQ 362
F+ L +L LNM NN + + L+ L ++ N Q
Sbjct: 188 EQLSPTAFNSLSSLQVLNMSHNNFFSLDTF------PYKCLNSLQVLDYSLNHIMTSKKQ 241
Query: 363 SMANFSSTIKQIAMGRNRIS 382
+ +F S++ + + +N +
Sbjct: 242 ELQHFPSSLAFLNLTQNDFA 261
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 84.7 bits (210), Expect = 2e-18
Identities = 56/260 (21%), Positives = 105/260 (40%), Gaps = 22/260 (8%)
Query: 107 NNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSVDTNYL--VGEIPS 164
N+ L +P I + L L +N + + L +LS+ +N L G
Sbjct: 15 NSKGLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQ 72
Query: 165 AIGSLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQ------LRN 218
+ L+ L + N + + ++ L L D + + + + + LRN
Sbjct: 73 SDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHS----NLKQMSEFSVFLSLRN 127
Query: 219 LRLLDIAFNHFSGMIPPPIF-NISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNN 277
L LDI+ H + IF +SSLEV+ ++ N F + D L NL L +
Sbjct: 128 LIYLDISHTHTR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ 186
Query: 278 FTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANELDFI 337
P + ++ S L+++ S N F + + L +L L+ +N++ T+ + +
Sbjct: 187 LEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI--MTSKKQELQ 244
Query: 338 NLLANCSKLERLYFNRNRFQ 357
+ ++ L L +N F
Sbjct: 245 HFPSS---LAFLNLTQNDFA 261
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 78.1 bits (193), Expect = 3e-16
Identities = 46/236 (19%), Positives = 85/236 (36%), Gaps = 20/236 (8%)
Query: 218 NLRLLDIAFNHFSGMIPPPIF-NISSLEVISLSENRFT-GSLPVDAGVNLPNLRQLSPNG 275
+ L++ N +P +F ++ L +SLS N + + +L+ L +
Sbjct: 29 SATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87
Query: 276 NNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVD-FSRLKNLSFLNMGINNLGTRTANEL 334
N ++ + +LE ++F + F L+NL +L++ +
Sbjct: 88 NGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG-- 144
Query: 335 DFINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNRISGTIPPGI-RSHA 393
+ S LE L N FQ + + + + + ++ + P S +
Sbjct: 145 ----IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLS 199
Query: 394 NLNWLTMDSNLFTGTIPPVIGELKNLQLLDLGGNFLQ-------GSIPSSLGNLTL 442
+L L M N F L +LQ+LD N + PSSL L L
Sbjct: 200 SLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNL 255
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 64.6 bits (158), Expect = 8e-12
Identities = 52/234 (22%), Positives = 84/234 (35%), Gaps = 34/234 (14%)
Query: 77 TRLDL-RNQSIGGPLSPYV-GNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSF 134
T+L L N + L+Y++L+ NG + + L LE L +++
Sbjct: 55 TKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSNFLGLEQLEHLDFQHSNL 113
Query: 135 SGTIPTNLSRRSNLIELSVDTNYLVGEIPSAIGSLFKLERLFIFHNHITGQLPASIGNLS 194
+ S SL L L I H H LS
Sbjct: 114 K-QMSE----------------------FSVFLSLRNLIYLDISHTHTRVAFNGIFNGLS 150
Query: 195 SLLAFDVRENILWGRI--DSLVQLRNLRLLDIAFNHFSGMIPPPIF-NISSLEVISLSEN 251
SL + N D +LRNL LD++ + P F ++SSL+V+++S N
Sbjct: 151 SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSHN 209
Query: 252 RFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSL--SNASRLEMIEFSRNQFS 303
F SL L +L+ L + N+ + S L + ++N F+
Sbjct: 210 NFF-SLDTFPYKCLNSLQVLDYSLNHIM-TSKKQELQHFPSSLAFLNLTQNDFA 261
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 56.2 bits (136), Expect = 5e-09
Identities = 31/175 (17%), Positives = 60/175 (34%), Gaps = 14/175 (8%)
Query: 274 NGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANE 333
N T S+P + S +E N+ F +L L+ L++ N L +
Sbjct: 15 NSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCS 71
Query: 334 LDFINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNRISGTIPPGI-RSH 392
+ L+ L + N + + ++ + + + + S
Sbjct: 72 QSDFGT----TSLKYLDLSFNGVI-TMSSNFLGLEQ-LEHLDFQHSNLKQMSEFSVFLSL 125
Query: 393 ANLNWLTMDSNLFTGTIPPVIGELKNLQLLDLGGNFLQGSIP----SSLGNLTLL 443
NL +L + + L +L++L + GN Q + + L NLT L
Sbjct: 126 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL 180
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 84.4 bits (209), Expect = 9e-18
Identities = 65/370 (17%), Positives = 132/370 (35%), Gaps = 48/370 (12%)
Query: 74 QRVTRLDLRNQSIGGPLSPYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNS 133
+T LD N SI + L+ L + +N + + + + L L +N
Sbjct: 42 ATLTSLDCHNSSITD--MTGIEKLTGLTKLICTSN-NITTLD--LSQNTNLTYLACDSNK 96
Query: 134 FSGTIPTNLSRRSNLIELSVDTNYLVGEIPSAIGSLFKLERLFIFHNHITGQLPASIGNL 193
+ T L + L L+ DTN L ++ + L L N +T + +
Sbjct: 97 LTNLDVTPL---TKLTYLNCDTNKL-TKLD--VSQNPLLTYLNCARNTLT---EIDVSHN 147
Query: 194 SSLLAFDVRENILWGRIDSLVQLRNLRLLDIAFNHFSGMIPPPIFNISSLEVISLSENRF 253
+ L D N ++D + L LD +FN + + + L ++ N
Sbjct: 148 TQLTELDCHLNKKITKLD-VTPQTQLTTLDCSFNKITEL---DVSQNKLLNRLNCDTNNI 203
Query: 254 TGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRL 313
T L ++ L L + N T + ++ ++L + S N + +D S L
Sbjct: 204 T-KLDLN---QNIQLTFLDCSSNKLTE---IDVTPLTQLTYFDCSVNPLT---ELDVSTL 253
Query: 314 KNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQ 373
L+ L+ +L E+D L + ++L R + + ++ +
Sbjct: 254 SKLTTLHCIQTDL-----LEID----LTHNTQLIYFQAEGCRK---IKELDVTHNTQLYL 301
Query: 374 IAMGRNRISGTIPPGIRSHANLNWLTMDSNLFTGTIPPVIGELKNLQLLDLGGNFLQGSI 433
+ I+ + + + L +L +++ T + + L+ L +Q
Sbjct: 302 LDCQAAGIT-ELD--LSQNPKLVYLYLNNTELT-ELD--VSHNTKLKSLSCVNAHIQ-DF 354
Query: 434 PSSLGNLTLL 443
S+G + L
Sbjct: 355 S-SVGKIPAL 363
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 73.2 bits (180), Expect = 3e-14
Identities = 49/337 (14%), Positives = 106/337 (31%), Gaps = 50/337 (14%)
Query: 124 LEGLVLSNNSFSGTIPTNLSRRSNLIELSVDTNYLVGEIPSAIGSLFKLERLFIFHNHIT 183
V + T + + + L L + + + I L L +L N+IT
Sbjct: 20 FASEVAAAFEMQATDTISEEQLATLTSLDCHNSSI--TDMTGIEKLTGLTKLICTSNNIT 77
Query: 184 GQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLRLLDIAFNHFSGMIPPPIFNISSL 243
+ ++L N L + L L L+ N + + + L
Sbjct: 78 TL---DLSQNTNLTYLACDSNKL--TNLDVTPLTKLTYLNCDTNKLTKL---DVSQNPLL 129
Query: 244 EVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFS 303
++ + N T + V + L +L + N + ++ ++L ++ S N+ +
Sbjct: 130 TYLNCARNTLT-EIDVS---HNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNKIT 183
Query: 304 GRVSVDFSRLKNLSFLNMGINNLGTRTANELDFINL-----------------LANCSKL 346
+D S+ K L+ LN NN+ +LD + ++L
Sbjct: 184 ---ELDVSQNKLLNRLNCDTNNI-----TKLDLNQNIQLTFLDCSSNKLTEIDVTPLTQL 235
Query: 347 ERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNRISGTIPPGIRSHANLNWLTMDSNLFT 406
+ N + +++ + + + + I + + L + +
Sbjct: 236 TYFDCSVNPLTELDVSTLSK----LTTLHCIQTDLL-EID--LTHNTQLIYFQAEGCRKI 288
Query: 407 GTIPPVIGELKNLQLLDLGGNFLQGSIPSSLGNLTLL 443
+ + L LLD + S L L
Sbjct: 289 KELD--VTHNTQLYLLDCQAAGITELDLSQNPKLVYL 323
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 62.0 bits (151), Expect = 2e-10
Identities = 50/298 (16%), Positives = 93/298 (31%), Gaps = 35/298 (11%)
Query: 146 SNLIELSVDTNYLVGEIPSAIGSLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENI 205
N + + L L L ++ IT + I L+ L N
Sbjct: 18 DNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSIT-DMTG-IEKLTGLTKLICTSNN 75
Query: 206 LWGRIDSLVQLRNLRLLDIAFNHFSGMIPPPIFNISSLEVISLSENRFTGSLPVDAGVNL 265
+ L Q NL L N + + + ++ L ++ N+ T L V
Sbjct: 76 I--TTLDLSQNTNLTYLACDSNKLTNL---DVTPLTKLTYLNCDTNKLT-KLDVS---QN 126
Query: 266 PNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINN 325
P L L+ N T + +S+ ++L ++ N+ +D + L+ L+ N
Sbjct: 127 PLLTYLNCARNTLT---EIDVSHNTQLTELDCHLNKKIT--KLDVTPQTQLTTLDCSFNK 181
Query: 326 LGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNRISGTI 385
+ ELD + L RL + N + + + + N+++ I
Sbjct: 182 I-----TELDV----SQNKLLNRLNCDTNNITKL---DLNQNIQ-LTFLDCSSNKLT-EI 227
Query: 386 PPGIRSHANLNWLTMDSNLFTGTIPPVIGELKNLQLLDLGGNFLQGSIPSSLGNLTLL 443
+ L + N T + + L L L L + L
Sbjct: 228 D--VTPLTQLTYFDCSVNPLT-ELD--VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYF 280
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 59.3 bits (144), Expect = 8e-10
Identities = 42/268 (15%), Positives = 84/268 (31%), Gaps = 27/268 (10%)
Query: 77 TRLDLRNQSIGGPLSPYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSG 136
T LD L V + L ++ + N + E+ + + +L L N+ +
Sbjct: 151 TELDCHLNKKITKLD--VTPQTQLTTLDCSFNK-ITELD--VSQNKLLNRLNCDTNNIT- 204
Query: 137 TIPTNLSRRSNLIELSVDTNYLVGEIPSAIGSLFKLERLFIFHNHITGQLPASIGNLSSL 196
+ L++ L L +N L EI + L +L N +T + LS L
Sbjct: 205 KLD--LNQNIQLTFLDCSSNKLT-EID--VTPLTQLTYFDCSVNPLTEL---DVSTLSKL 256
Query: 197 LAFDVRENILWGRIDSLVQLRNLRLLDIAFNHFSGMIPPPIFNISSLEVISLSENRFTGS 256
+ + + N +L+ + + + + L ++ T
Sbjct: 257 TTLHCIQT----DLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGIT-E 311
Query: 257 LPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNL 316
L + P L L N T + +S+ ++L+ + ++ L
Sbjct: 312 LDLS---QNPKLVYLYLNNTELT-ELD--VSHNTKLKSLSCVNAHIQD--FSSVGKIPAL 363
Query: 317 SFLNMGINNLGTRTANELDFINLLANCS 344
+ T L +L S
Sbjct: 364 NNNFEAEGQTITMPKETLTNNSLTIAVS 391
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 81.7 bits (202), Expect = 5e-17
Identities = 61/261 (23%), Positives = 103/261 (39%), Gaps = 42/261 (16%)
Query: 172 LERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRID--SLVQLRNLRLLDIAFNHF 229
L + N+I + +L L + N + +I+ + L +L L++ N
Sbjct: 77 TRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSI-RQIEVGAFNGLASLNTLELFDNWL 135
Query: 230 SGMIPPPIF-NISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSN 288
+ +IP F +S L + L N S+P A +P+L +L L
Sbjct: 136 T-VIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLD-------------LGE 180
Query: 289 ASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLER 348
+LE I S F G L NL +LN+G+ N+ + L LE
Sbjct: 181 LKKLEYI--SEGAFEG--------LFNLKYLNLGMCNIKD--------MPNLTPLVGLEE 222
Query: 349 LYFNRNRFQGVLPQSMANFSSTIKQIAMGRNRISGTIPPG-IRSHANLNWLTMDSNLFTG 407
L + N F + P S SS +K++ + +++S I A+L L + N +
Sbjct: 223 LEMSGNHFPEIRPGSFHGLSS-LKKLWVMNSQVS-LIERNAFDGLASLVELNLAHNNLS- 279
Query: 408 TIPP-VIGELKNLQLLDLGGN 427
++P + L+ L L L N
Sbjct: 280 SLPHDLFTPLRYLVELHLHHN 300
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 74.8 bits (184), Expect = 1e-14
Identities = 52/231 (22%), Positives = 91/231 (39%), Gaps = 9/231 (3%)
Query: 100 LRYINLANNGFLGEIPPQI-GRLNMLEGLVLSNNSFSGTIPTN-LSRRSNLIELSVDTNY 157
RY+NL N + I L+ LE L L NS I + ++L L + N+
Sbjct: 77 TRYLNLMEN-NIQMIQADTFRHLHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLELFDNW 134
Query: 158 LVGEIPSAIGSLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRI--DSLVQ 215
L A L KL L++ +N I + + SL+ D+ E I +
Sbjct: 135 LTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEG 194
Query: 216 LRNLRLLDIAFNHFSGMIPPPIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNG 275
L NL+ L++ + M P + + LE + +S N F + + L +L++L
Sbjct: 195 LFNLKYLNLGMCNIKDM--PNLTPLVGLEELEMSGNHFP-EIRPGSFHGLSSLKKLWVMN 251
Query: 276 NNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNL 326
+ + + + L + + N S F+ L+ L L++ N
Sbjct: 252 SQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPW 302
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 69.0 bits (169), Expect = 8e-13
Identities = 54/257 (21%), Positives = 96/257 (37%), Gaps = 22/257 (8%)
Query: 62 CQWTG--VTCGRRH---------QRVTRLDLRNQSIGGPLSPYVGNLSFLRYINLANNGF 110
C V C RR L+L +I + +L L + L N
Sbjct: 52 CSNQFSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNS- 110
Query: 111 LGEIPPQI-GRLNMLEGLVLSNNSFSGTIPTN-LSRRSNLIELSVDTNYLVGEIPSAIGS 168
+ +I L L L L +N + IP+ S L EL + N + A
Sbjct: 111 IRQIEVGAFNGLASLNTLELFDNWLT-VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNR 169
Query: 169 LFKLERLFIFH-NHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLRLLDIAFN 227
+ L RL + + + L +L ++ + + +L L L L+++ N
Sbjct: 170 VPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNI-KDMPNLTPLVGLEELEMSGN 228
Query: 228 HFSGMIPPPIF-NISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVS- 285
HF I P F +SSL+ + + ++ + + +A L +L +L+ NN + S+P
Sbjct: 229 HFP-EIRPGSFHGLSSLKKLWVMNSQVS-LIERNAFDGLASLVELNLAHNNLS-SLPHDL 285
Query: 286 LSNASRLEMIEFSRNQF 302
+ L + N +
Sbjct: 286 FTPLRYLVELHLHHNPW 302
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 63.6 bits (155), Expect = 4e-11
Identities = 49/236 (20%), Positives = 78/236 (33%), Gaps = 48/236 (20%)
Query: 217 RNLRLLDIAFNHFSGMIPPPIF-NISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNG 275
N R L++ N+ MI F ++ LEV+ L N + V A L +L L
Sbjct: 75 SNTRYLNLMENNIQ-MIQADTFRHLHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLELFD 132
Query: 276 NNFTGSIPV-SLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANEL 334
N T IP + S+L + N S F+R+ +L L++G +L
Sbjct: 133 NWLT-VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELK-------KL 184
Query: 335 DFI--NLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNRISGTIPPGIRSH 392
++I L+ L + + P +
Sbjct: 185 EYISEGAFEGLFNLKYLNLGMCNIKDM---------------------------PNLTPL 217
Query: 393 ANLNWLTMDSNLFTGTIPP-VIGELKNLQLLDLGGNFLQGSIP----SSLGNLTLL 443
L L M N F I P L +L+ L + + + I L +L L
Sbjct: 218 VGLEELEMSGNHFP-EIRPGSFHGLSSLKKLWVMNSQVS-LIERNAFDGLASLVEL 271
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 57.8 bits (140), Expect = 3e-09
Identities = 38/212 (17%), Positives = 65/212 (30%), Gaps = 37/212 (17%)
Query: 233 IPPPIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRL 292
+P I S+ ++L EN + D +L +L L N+ + + + L
Sbjct: 69 VPQGIP--SNTRYLNLMENNIQ-MIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASL 125
Query: 293 EMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFN 352
+E N + S F L L L + N + + + L RL
Sbjct: 126 NTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSY------AFNRVPSLMRLDLG 179
Query: 353 RNRFQGVLPQSMANFSSTIKQIAMGRNRISGTIPPGI-RSHANLNWLTMDSNLFTGTIPP 411
++ I G NL +L + +P
Sbjct: 180 EL------------------------KKLE-YISEGAFEGLFNLKYLNLGMCNIK-DMPN 213
Query: 412 VIGELKNLQLLDLGGNFLQGSIPSSLGNLTLL 443
+ L L+ L++ GN P S L+ L
Sbjct: 214 LTP-LVGLEELEMSGNHFPEIRPGSFHGLSSL 244
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 54.8 bits (132), Expect = 2e-08
Identities = 30/182 (16%), Positives = 58/182 (31%), Gaps = 16/182 (8%)
Query: 266 PNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINN 325
++ + +P + S + N + F L +L L +G N+
Sbjct: 54 NQFSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNS 110
Query: 326 LGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNRISGTI 385
+ + L L N + + S ++++ + N I +I
Sbjct: 111 IRQIEV------GAFNGLASLNTLELFDNWLTVIPSGAFEYLSK-LRELWLRNNPIE-SI 162
Query: 386 PPGI-RSHANLNWLTMDSNLFTGTIPP-VIGELKNLQLLDLGGNFLQGSIP--SSLGNLT 441
P +L L + I L NL+ L+LG ++ +P + L L
Sbjct: 163 PSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMPNLTPLVGLE 221
Query: 442 LL 443
L
Sbjct: 222 EL 223
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 80.9 bits (200), Expect = 8e-17
Identities = 63/272 (23%), Positives = 102/272 (37%), Gaps = 44/272 (16%)
Query: 161 EIPSAIGSLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRI--DSLVQLRN 218
E+P I + L + N I S +L L + N + I + L N
Sbjct: 57 EVPDGIST--NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHI-RTIEIGAFNGLAN 113
Query: 219 LRLLDIAFNHFSGMIPPPIF-NISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNN 277
L L++ N + IP F +S L+ + L N S+P A +P+LR+L
Sbjct: 114 LNTLELFDNRLT-TIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLD----- 166
Query: 278 FTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANELDFI 337
L RL I S F G L NL +LN+ + NL I
Sbjct: 167 --------LGELKRLSYI--SEGAFEG--------LSNLRYLNLAMCNL--------REI 200
Query: 338 NLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNRISGTIPPG-IRSHANLN 396
L KL+ L + N + P S ++++ M +++I I + +L
Sbjct: 201 PNLTPLIKLDELDLSGNHLSAIRPGSFQGLMH-LQKLWMIQSQIQ-VIERNAFDNLQSLV 258
Query: 397 WLTMDSNLFTGTIPP-VIGELKNLQLLDLGGN 427
+ + N T +P + L +L+ + L N
Sbjct: 259 EINLAHNNLT-LLPHDLFTPLHHLERIHLHHN 289
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 75.9 bits (187), Expect = 4e-15
Identities = 49/235 (20%), Positives = 89/235 (37%), Gaps = 22/235 (9%)
Query: 217 RNLRLLDIAFNHFSGMIPPPIF-NISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNG 275
N RLL++ N +I F ++ LE++ LS N ++ + A L NL L
Sbjct: 64 TNTRLLNLHENQIQ-IIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLELFD 121
Query: 276 NNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANELD 335
N T + S+L+ + N S F+R+ +L L++G L
Sbjct: 122 NRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELK-------RLS 174
Query: 336 FI--NLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNRISGTIPPGI-RSH 392
+I S L L + + ++ + ++ + N +S I PG +
Sbjct: 175 YISEGAFEGLSNLRYLNLAMCNLREI--PNLTPLIK-LDELDLSGNHLS-AIRPGSFQGL 230
Query: 393 ANLNWLTMDSNLFTGTIPP-VIGELKNLQLLDLGGN---FLQGSIPSSLGNLTLL 443
+L L M + I L++L ++L N L + + L +L +
Sbjct: 231 MHLQKLWMIQSQIQ-VIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERI 284
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 75.2 bits (185), Expect = 7e-15
Identities = 53/231 (22%), Positives = 90/231 (38%), Gaps = 9/231 (3%)
Query: 100 LRYINLANNGFLGEIPP-QIGRLNMLEGLVLSNNSFSGTIPTN-LSRRSNLIELSVDTNY 157
R +NL N + I L LE L LS N TI + +NL L + N
Sbjct: 66 TRLLNLHEN-QIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLELFDNR 123
Query: 158 LVGEIPSAIGSLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRI--DSLVQ 215
L A L KL+ L++ +N I + + SL D+ E I +
Sbjct: 124 LTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEG 183
Query: 216 LRNLRLLDIAFNHFSGMIPPPIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNG 275
L NLR L++A + + P + + L+ + LS N + ++ + L +L++L
Sbjct: 184 LSNLRYLNLAMCNLREI--PNLTPLIKLDELDLSGNHLS-AIRPGSFQGLMHLQKLWMIQ 240
Query: 276 NNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNL 326
+ + N L I + N + F+ L +L +++ N
Sbjct: 241 SQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW 291
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 69.4 bits (170), Expect = 5e-13
Identities = 57/248 (22%), Positives = 94/248 (37%), Gaps = 20/248 (8%)
Query: 67 VTCGRRH---------QRVTRLDLRNQSIGGPLSPYVGNLSFLRYINLANNGFLGEIPPQ 117
V C R++ L+L I +L L + L+ N + I
Sbjct: 48 VICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNH-IRTIEIG 106
Query: 118 I-GRLNMLEGLVLSNNSFSGTIPTN-LSRRSNLIELSVDTNYLVGEIPSAIGSLFKLERL 175
L L L L +N + TIP S L EL + N + A + L RL
Sbjct: 107 AFNGLANLNTLELFDNRLT-TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRL 165
Query: 176 FIFH-NHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLRLLDIAFNHFSGMIP 234
+ ++ + LS+L ++ L I +L L L LD++ NH S I
Sbjct: 166 DLGELKRLSYISEGAFEGLSNLRYLNLAMCNL-REIPNLTPLIKLDELDLSGNHLS-AIR 223
Query: 235 PPIF-NISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVS-LSNASRL 292
P F + L+ + + +++ + +A NL +L +++ NN T +P + L
Sbjct: 224 PGSFQGLMHLQKLWMIQSQIQ-VIERNAFDNLQSLVEINLAHNNLT-LLPHDLFTPLHHL 281
Query: 293 EMIEFSRN 300
E I N
Sbjct: 282 ERIHLHHN 289
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 78.5 bits (194), Expect = 3e-16
Identities = 66/335 (19%), Positives = 122/335 (36%), Gaps = 44/335 (13%)
Query: 99 FLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSVDTNYL 158
LR + ++ G L +P +I L L NN S + +L L + N +
Sbjct: 34 HLRVVQCSDLG-LKAVPKEISPD--TTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKI 90
Query: 159 VGEIPSAIGSLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRI--DSLVQL 216
A L KL++L+I NH+ ++P ++ SSL+ + +N + ++ L
Sbjct: 91 SKIHEKAFSPLRKLQKLYISKNHLV-EIPPNL--PSSLVELRIHDNRI-RKVPKGVFSGL 146
Query: 217 RNLRLLDIAFNHF-SGMIPPPIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNG 275
RN+ +++ N + P F+ L + +SE + T +P D L +L +
Sbjct: 147 RNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLT-GIPKDL---PETLNELHLDH 202
Query: 276 NNFTGSIPV-SLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANEL 334
N +I + L S+L + NQ + S L L L++ N L A
Sbjct: 203 NKIQ-AIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAG-- 259
Query: 335 DFINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNRISGTIPPGIRSHAN 394
L + L+ +Y + N V +K A
Sbjct: 260 -----LPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVK-------------------RAY 295
Query: 395 LNWLTMDSN-LFTGTIPPVIGE-LKNLQLLDLGGN 427
N +++ +N + + P + + + G
Sbjct: 296 YNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 75.1 bits (185), Expect = 5e-15
Identities = 51/237 (21%), Positives = 95/237 (40%), Gaps = 27/237 (11%)
Query: 218 NLRLLDIAFNHFSGMIPPPIF-NISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGN 276
+ LLD+ N S + F + L + L N+ + + A L L++L + N
Sbjct: 55 DTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKIS-KIHEKAFSPLRKLQKLYISKN 112
Query: 277 NFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANELDF 336
+ IP +L S L + N+ FS L+N++ + MG N L F
Sbjct: 113 HLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAF 169
Query: 337 INL------LANC----------SKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNR 380
L ++ L L+ + N+ Q + + + +S + ++ +G N+
Sbjct: 170 DGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSK-LYRLGLGHNQ 228
Query: 381 ISGTIPPGI-RSHANLNWLTMDSNLFTGTIPPVIGELKNLQLLDLGGNFLQGSIPSS 436
I I G L L +D+N + +P + +LK LQ++ L N + + +
Sbjct: 229 IR-MIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNIT-KVGVN 282
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 63.9 bits (156), Expect = 2e-11
Identities = 44/268 (16%), Positives = 82/268 (30%), Gaps = 44/268 (16%)
Query: 96 NLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSVDT 155
L L+ + ++ N L EIPP + + L L + +N S N+ + +
Sbjct: 100 PLRKLQKLYISKN-HLVEIPPNL--PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGG 156
Query: 156 NYL-VGEIPSAIGSLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLV 214
N L KL L I +T +P +
Sbjct: 157 NPLENSGFEPGAFDGLKLNYLRISEAKLT-GIPKDL------------------------ 191
Query: 215 QLRNLRLLDIAFNHFSGMIPPPIF-NISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSP 273
L L + N I S L + L N+ + + LP LR+L
Sbjct: 192 -PETLNELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQIR-MIENGSLSFLPTLRELHL 248
Query: 274 NGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLK------NLSFLNMGINNLG 327
+ N + +P L + L+++ N + DF + + +++ N +
Sbjct: 249 DNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVP 307
Query: 328 TRTANELDFINLLANCSKLERLYFNRNR 355
F + + + F +
Sbjct: 308 YWEVQPATFRCV----TDRLAIQFGNYK 331
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 78.9 bits (194), Expect = 6e-16
Identities = 46/273 (16%), Positives = 88/273 (32%), Gaps = 41/273 (15%)
Query: 178 FHNHITGQ---LPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLRLLDIAFNHFSGMIP 234
F+N I+G ++ N + + L + + S +P
Sbjct: 18 FYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKE-CLINQFSELQLNRLNLSS-LP 75
Query: 235 PPIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEM 294
+ + V+ +++N SLP +L L N + ++P ++ L++
Sbjct: 76 DNLP--PQITVLEITQNALI-SLPE----LPASLEYLDACDNRLS-TLPELPASLKHLDV 127
Query: 295 IEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRN 354
NQ + + L ++N N L L + LE L N
Sbjct: 128 ---DNNQLT---MLP-ELPALLEYINADNNQLTM----------LPELPTSLEVLSVRNN 170
Query: 355 RFQGVLPQSMANFSSTIKQIAMGRNRISGTIPPGIRSHANL----NWLTMDSNLFTGTIP 410
+ LP+ + ++ + + N + ++P + + + N T IP
Sbjct: 171 QLT-FLPELPES----LEALDVSTNLLE-SLPAVPVRNHHSEETEIFFRCRENRIT-HIP 223
Query: 411 PVIGELKNLQLLDLGGNFLQGSIPSSLGNLTLL 443
I L + L N L I SL T
Sbjct: 224 ENILSLDPTCTIILEDNPLSSRIRESLSQQTAQ 256
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 65.0 bits (158), Expect = 2e-11
Identities = 53/312 (16%), Positives = 97/312 (31%), Gaps = 65/312 (20%)
Query: 127 LVLSNNSFSGTIPT-------NLSRRSNLIELSVDTNYLVGEIPSAIGSLFKLERLFIFH 179
LS NSF TI + + N V + + + + L +
Sbjct: 11 FSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECL--INQFSELQLNR 68
Query: 180 NHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLRLLDIAFNHFSGMIPPPIFN 239
+++ LP ++ + +L+I N +P
Sbjct: 69 LNLS-SLPDNLPP-------------------------QITVLEITQNALI-SLPE---L 98
Query: 240 ISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSR 299
+SLE + +NR + +LP +L+ L + N T +P + LE I
Sbjct: 99 PASLEYLDACDNRLS-TLPEL----PASLKHLDVDNNQLT-MLPELPAL---LEYINADN 149
Query: 300 NQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGV 359
NQ + + +L L++ N L L LE L + N + +
Sbjct: 150 NQLT----MLPELPTSLEVLSVRNNQLTF----------LPELPESLEALDVSTNLLESL 195
Query: 360 --LPQSMANFSSTIKQIAMGRNRISGTIPPGIRSHANLNWLTMDSNLFTGTIPPVIGELK 417
+P + T NRI+ IP I S + ++ N + I + +
Sbjct: 196 PAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQT 254
Query: 418 NLQLLDLGGNFL 429
+
Sbjct: 255 AQPDYHGPRIYF 266
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 45.3 bits (107), Expect = 3e-05
Identities = 25/144 (17%), Positives = 41/144 (28%), Gaps = 9/144 (6%)
Query: 97 LSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNN---SFSGTIPTNLSRRSNLIELSV 153
+ L +++ NN L +P L E L +S N S N I
Sbjct: 159 PTSLEVLSVRNNQ-LTFLPELPESL---EALDVSTNLLESLPAVPVRNHHSEETEIFFRC 214
Query: 154 DTNYLVGEIPSAIGSLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSL 213
N + IP I SL + + N ++ + + I + D
Sbjct: 215 RENRIT-HIPENILSLDPTCTIILEDNPLS-SRIRESLSQQTAQPDYHGPRIYFSMSDGQ 272
Query: 214 VQLRNLRLLDIAFNHFSGMIPPPI 237
+ L D F +
Sbjct: 273 QNTLHRPLADAVTAWFPENKQSDV 296
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 77.0 bits (190), Expect = 7e-16
Identities = 42/228 (18%), Positives = 81/228 (35%), Gaps = 14/228 (6%)
Query: 130 SNNSFSGTIPTNLSRRSNLIELSVDTNYLVGEIPSAIGSLFKLERLFIFHNHITGQLPAS 189
+P + + + + N + ++ + L L++ N + A+
Sbjct: 19 PQQGLQ-AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAA 75
Query: 190 IGNLSSLLAFDVRENILWGRI--DSLVQLRNLRLLDIAFNHFSGMIPPPIF-NISSLEVI 246
L+ L D+ +N + + L L L + + P +F +++L+ +
Sbjct: 76 FTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYL 134
Query: 247 SLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRV 306
L +N +LP D +L NL L +GN + + L+ + +N+ +
Sbjct: 135 YLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVH 193
Query: 307 SVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRN 354
F L L L + NNL LA L+ L N N
Sbjct: 194 PHAFRDLGRLMTLYLFANNLSALPT------EALAPLRALQYLRLNDN 235
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 67.7 bits (166), Expect = 8e-13
Identities = 43/220 (19%), Positives = 75/220 (34%), Gaps = 37/220 (16%)
Query: 211 DSLVQLRNLRLLDIAFNHFSGMIPPPIF-NISSLEVISLSENRFTGSLPVDAGVNLPNLR 269
S RNL +L + N + I F ++ LE + LS+N S+ L L
Sbjct: 50 ASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLH 108
Query: 270 QLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLGTR 329
L + + L F L L +L + N L
Sbjct: 109 TLHLDRCGLQ-ELGPGL-----------------------FRGLAALQYLYLQDNALQAL 144
Query: 330 TANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNRISGTIPPGI 389
+ + L L+ + NR V ++ S + ++ + +NR++ + P
Sbjct: 145 PD------DTFRDLGNLTHLFLHGNRISSVPERAFRGLHS-LDRLLLHQNRVA-HVHPHA 196
Query: 390 RSH-ANLNWLTMDSNLFTGTIPP-VIGELKNLQLLDLGGN 427
L L + +N + +P + L+ LQ L L N
Sbjct: 197 FRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDN 235
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 65.8 bits (161), Expect = 3e-12
Identities = 46/218 (21%), Positives = 80/218 (36%), Gaps = 20/218 (9%)
Query: 233 IPPPIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRL 292
+P I ++ + I L NR + +P + NL L + N + + + L
Sbjct: 26 VPVGIP--AASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALL 82
Query: 293 EMIEFSRNQFSGRVSVD-FSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYF 351
E ++ S N V F L L L++ L L + L+ LY
Sbjct: 83 EQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPG------LFRGLAALQYLYL 136
Query: 352 NRNRFQGVLPQSMANFSSTIKQIAMGRNRISGTIPPGIRSH-ANLNWLTMDSNLFTGTIP 410
N Q + + + + + + + NRIS ++P +L+ L + N +
Sbjct: 137 QDNALQALPDDTFRDLGN-LTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRVA-HVH 193
Query: 411 P-VIGELKNLQLLDLGGNFLQGSIP----SSLGNLTLL 443
P +L L L L N L ++P + L L L
Sbjct: 194 PHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYL 230
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 63.1 bits (154), Expect = 3e-11
Identities = 41/187 (21%), Positives = 65/187 (34%), Gaps = 31/187 (16%)
Query: 96 NLSFLRYINLANNGFLGEIPPQI-GRLNMLEGLVLSNNSFSGTIPTN-LSRRSNLIELSV 153
L+ L ++L++N L + P L L L L + + L L +
Sbjct: 78 GLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYL 136
Query: 154 DTNYLVGEIPS-AIGSLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDS 212
N L +P L L LF+ N I+ V E G
Sbjct: 137 QDNALQ-ALPDDTFRDLGNLTHLFLHGNRIS----------------SVPERAFRG---- 175
Query: 213 LVQLRNLRLLDIAFNHFSGMIPPPIF-NISSLEVISLSENRFTGSLPVDAGVNLPNLRQL 271
L +L L + N + + P F ++ L + L N + +LP +A L L+ L
Sbjct: 176 ---LHSLDRLLLHQNRVA-HVHPHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYL 230
Query: 272 SPNGNNF 278
N N +
Sbjct: 231 RLNDNPW 237
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 77.5 bits (191), Expect = 9e-16
Identities = 49/308 (15%), Positives = 101/308 (32%), Gaps = 54/308 (17%)
Query: 124 LEGLVLSNNSFSGTIPTNLSRRSNLIELSVDTNYLVGEIPSAIGSLFKLERLFIFHNHIT 183
++ L LSNN + ++L R NL L + +N + + SL LE L + +N+++
Sbjct: 54 VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS 113
Query: 184 GQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLRLLDIAFNHFSGMIPPPIF-NISS 242
L +S F L +L L++ N + + +F +++
Sbjct: 114 -NLSSS--------WFK--------------PLSSLTFLNLLGNPYKTLGETSLFSHLTK 150
Query: 243 LEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQF 302
L+++ + + L L +L + ++ P SL + + + Q
Sbjct: 151 LQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQH 210
Query: 303 SGRVSVDFSRLKNLSFLNMGINNLGTRTANELDFI--NLLANCSKLERLYFNRNRFQGVL 360
+ + ++ L + +L T +EL N L +
Sbjct: 211 ILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF--- 267
Query: 361 PQSMANFSSTIKQIAMGRNRISGTIPPGIRSHANLNWLTMDSNLFTGTIPP-VIGELKNL 419
+ + + L L N ++P + L +L
Sbjct: 268 -----------------------QVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSL 303
Query: 420 QLLDLGGN 427
Q + L N
Sbjct: 304 QKIWLHTN 311
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 70.5 bits (173), Expect = 1e-13
Identities = 40/248 (16%), Positives = 93/248 (37%), Gaps = 26/248 (10%)
Query: 211 DSLVQLRNLRLLDIAFNHFSGMIPPPIF-NISSLEVISLSENRFTGSLPVDAGVNLPNLR 269
L + NL+ L + N + I F ++ SLE + LS N + +L L +L
Sbjct: 70 SDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYNYLS-NLSSSWFKPLSSLT 127
Query: 270 QLSPNGNNFTGSIPVSL-SNASRLEMIEFSRNQFSGRVSVD-FSRLKNLSFLNMGINNLG 327
L+ GN + SL S+ ++L+++ ++ F+ L L L + ++L
Sbjct: 128 FLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQ 187
Query: 328 TRTANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNRISGTIPP 387
+ L + + L + + +L + + +S+++ + + +
Sbjct: 188 SYEPK------SLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFS 240
Query: 388 GIRSHA--------NLNWLTMDSNLFTGTIPPVIGELKNLQLLDLGGNFLQGSIP----S 435
+ + + + + ++ ++ L L+ N L+ S+P
Sbjct: 241 ELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLK-SVPDGIFD 298
Query: 436 SLGNLTLL 443
L +L +
Sbjct: 299 RLTSLQKI 306
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 69.0 bits (169), Expect = 5e-13
Identities = 39/196 (19%), Positives = 73/196 (37%), Gaps = 15/196 (7%)
Query: 96 NLSFLRYINLANNGFLGEIPPQI--GRLNMLEGLVLSNNSFSGTIPTN-LSRRSNLIELS 152
LS L ++NL N + L L+ L + N I + + L EL
Sbjct: 122 PLSSLTFLNLLGNP-YKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELE 180
Query: 153 VDTNYLVGEIPSAIGSLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENIL------ 206
+D + L P ++ S+ + L + L + SS+ ++R+ L
Sbjct: 181 IDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFS 240
Query: 207 ---WGRIDSLVQLRNLRLLDIAFNHFSGMIPPPIFNISSLEVISLSENRFTGSLPVDAGV 263
G +SL++ R + I + + IS L + S N+ S+P
Sbjct: 241 ELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLK-SVPDGIFD 298
Query: 264 NLPNLRQLSPNGNNFT 279
L +L+++ + N +
Sbjct: 299 RLTSLQKIWLHTNPWD 314
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 56.7 bits (137), Expect = 6e-09
Identities = 35/215 (16%), Positives = 69/215 (32%), Gaps = 37/215 (17%)
Query: 233 IPPPIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRL 292
IP + +++ + LS NR T + NL+ L N +I
Sbjct: 46 IPSGLT--EAVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGIN-TIEEDS------ 95
Query: 293 EMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFN 352
FS L +L L++ N L +++ S L L
Sbjct: 96 -----------------FSSLGSLEHLDLSYNYLSNLSSS------WFKPLSSLTFLNLL 132
Query: 353 RNRFQGVLPQSMANFSSTIKQIAMGRNRISGTIPPGIRSH-ANLNWLTMDSNLFTGTIPP 411
N ++ + S+ + + ++ + +G I + L L +D++ P
Sbjct: 133 GNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPK 192
Query: 412 VIGELKNLQLLDLGGN---FLQGSIPSSLGNLTLL 443
+ ++N+ L L L ++ L
Sbjct: 193 SLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECL 227
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 75.7 bits (186), Expect = 7e-15
Identities = 60/352 (17%), Positives = 115/352 (32%), Gaps = 17/352 (4%)
Query: 103 INLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSVDTNYLVGEI 162
++ + NG L +P + + L +S N S +++ S L L + N +
Sbjct: 5 VDRSKNG-LIHVPKDLSQK--TTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLD 61
Query: 163 PSAIGSLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENIL--WGRIDSLVQLRNLR 220
S +LE L + HN + S +L D+ N + L+
Sbjct: 62 ISVFKFNQELEYLDLSHNKLVK---ISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLK 118
Query: 221 LLDIAFNHFSGMIPPPIFNISSLEVISLSENRFTGSLPVDAGVNLP--NLRQLSPNGNNF 278
L ++ H PI +++ +V+ + + + + +L + P F
Sbjct: 119 FLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEF 178
Query: 279 TGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGIN---NLGTRTANELD 335
+ VS+ + LE+ + S S L L N N T N
Sbjct: 179 HFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFI 238
Query: 336 FINLLANCSKLERLYFNRNRFQGVLPQSMANFSST----IKQIAMGRNRISGTIPPGIRS 391
I L + + + + QG L ++S T + + +
Sbjct: 239 RILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEI 298
Query: 392 HANLNWLTMDSNLFTGTIPPVIGELKNLQLLDLGGNFLQGSIPSSLGNLTLL 443
+N+N + ++ LD N L ++ + G+LT L
Sbjct: 299 FSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTEL 350
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 71.0 bits (174), Expect = 2e-13
Identities = 66/390 (16%), Positives = 138/390 (35%), Gaps = 32/390 (8%)
Query: 77 TRLDL-RNQSIGGPLSPYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFS 135
LDL N P+ GN+S L+++ L+ I LN+ + L++ ++
Sbjct: 93 KHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYG 152
Query: 136 GTIP----TNLSRRSNLIELSVDTNYLVGEIPSAIGSLFKLERLFIFHNHITGQLPASIG 191
+ + S I + + + ++ ++ LE I + +
Sbjct: 153 EKEDPEGLQDFNTESLHIVFPTNKEFHF-ILDVSVKTVANLELSNIKCVLEDNKCSYFLS 211
Query: 192 NLSSLLAFDVRENILWGRID----------SLVQLRNLRLLDIAFNHFSGMIPPPIFNIS 241
L+ L N+ I+ LV + I+ G + F+ S
Sbjct: 212 ILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYS 271
Query: 242 SLEVISLSENRFT----GSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEF 297
+ +LS ++ G N+ + + + S S ++F
Sbjct: 272 GTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDF 331
Query: 298 SRNQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQ 357
S N + V + L L L + +N L + + L++L ++N
Sbjct: 332 SNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQM----KSLQQLDISQNSVS 387
Query: 358 GVLPQSMANFSSTIKQIAMGRNRISGTIPPGIRSHANLNWLTMDSNLFTGTIPPVIGELK 417
+ +++ ++ + M N ++ TI + + L + SN +IP + +L+
Sbjct: 388 YDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPP--RIKVLDLHSNKIK-SIPKQVVKLE 444
Query: 418 NLQLLDLGGNFLQGSIP----SSLGNLTLL 443
LQ L++ N L+ S+P L +L +
Sbjct: 445 ALQELNVASNQLK-SVPDGIFDRLTSLQKI 473
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 68.4 bits (167), Expect = 1e-12
Identities = 56/375 (14%), Positives = 119/375 (31%), Gaps = 25/375 (6%)
Query: 76 VTRLDLRNQSIGGPLSPYVGNLSFLRYINLANNGFLGEIPPQI-GRLNMLEGLVLSNNSF 134
T L++ I + + +LS LR + +++N + + + LE L LS+N
Sbjct: 23 TTILNISQNYISELWTSDILSLSKLRILIISHNR-IQYLDISVFKFNQELEYLDLSHNKL 81
Query: 135 SGTIPTNLSRRSNLIELSVDTNYL-VGEIPSAIGSLFKLERLFIFHNHITGQLPASIGNL 193
NL L + N I G++ +L+ L + H+ I +L
Sbjct: 82 VKISCHPTV---NLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHL 138
Query: 194 SSLLAFDVRENILWGRIDSLVQLRNLRLLDIAFNHFSGMIPPPIFNISSLEVISLSENRF 253
+ V +G + L++ + + I ++S V +L +
Sbjct: 139 NISKVLLVLGE-TYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNI 197
Query: 254 TGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRL 313
L + ++ N ++ ++ + I + V + +
Sbjct: 198 KCVLEDNKCSYFLSI-LAKLQTNPKLSNLTLNNIETTWNSFIRILQL-------VWHTTV 249
Query: 314 KNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQ 373
S N+ + + +L A + ++ + F + S +
Sbjct: 250 WYFSISNVKLQGQLDFRDFDYSGTSLKAL--SIHQVVSDVFGF---PQSYIYEIFSNMNI 304
Query: 374 IAMGRNRISGTIPPGIRSHANLNWLTMDSNLFTGTIPPVIGELKNLQLLDLGGNFLQ--- 430
+ + L +NL T T+ G L L+ L L N L+
Sbjct: 305 KNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELS 364
Query: 431 --GSIPSSLGNLTLL 443
+ + + +L L
Sbjct: 365 KIAEMTTQMKSLQQL 379
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 66.0 bits (161), Expect = 8e-12
Identities = 56/371 (15%), Positives = 129/371 (34%), Gaps = 30/371 (8%)
Query: 77 TRLDLRNQSIGGPLSPYVGNLSFLRYINLANNGFLGEIPP---QIGRLNMLEGLVLSNNS 133
L L + + +L+ + + + + + P Q L + +N
Sbjct: 118 KFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKE 177
Query: 134 FSGTIPTNLSRRSNLIELSVDTNYLVGEIPSAIGSLFKLER------LFIFHNHITGQLP 187
F + ++ +NL ++ + + L KL+ L + + T
Sbjct: 178 FHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSF 237
Query: 188 ASIGNL---SSLLAFDVRENILWGRID------SLVQLRNLRLLDIAFNHFSGMIPPPIF 238
I L +++ F + L G++D S L+ L + + + F
Sbjct: 238 IRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYE 297
Query: 239 NISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFS 298
S++ + + + + + + + L + N T ++ + + + LE +
Sbjct: 298 IFSNMNIKNFTVSGTR-MVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQ 356
Query: 299 RNQFS--GRVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRF 356
NQ +++ +++K+L L++ N++ + + D L L + N
Sbjct: 357 MNQLKELSKIAEMTTQMKSLQQLDISQNSV-SYDEKKGDCSWT----KSLLSLNMSSNIL 411
Query: 357 QGVLPQSMANFSSTIKQIAMGRNRISGTIPPGIRSHANLNWLTMDSNLFTGTIPPVIGEL 416
+ + IK + + N+I +IP + L L + SN + L
Sbjct: 412 TDTIFRC---LPPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRL 467
Query: 417 KNLQLLDLGGN 427
+LQ + L N
Sbjct: 468 TSLQKIWLHTN 478
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 58.3 bits (141), Expect = 2e-09
Identities = 47/355 (13%), Positives = 117/355 (32%), Gaps = 38/355 (10%)
Query: 8 FCCLATLSLSLLLHSHKTICANSNETDRLALLAIKLQLHDPLGVTSSWNNSMSLCQWTGV 67
T SL ++ ++K + + + ++L + + + +S+
Sbjct: 160 LQDFNTESLHIVFPTNKEFHFILDVS-VKTVANLELSNIKCVLEDNKCSYFLSILAKLQT 218
Query: 68 TCGRRHQRVTRLDLRNQSIGGPLSPYVGNLSFLRYINLANNGFLGEIPPQIGR-----LN 122
+ + ++ S L + + Y +++N G++ + L
Sbjct: 219 NPKLSNLTLNNIETTWNSFIRILQLV--WHTTVWYFSISNVKLQGQLDFRDFDYSGTSLK 276
Query: 123 MLEGLVLSNNSFSGTIPTNLSRRSNLIELSVDTNYLVGEIPSAIGSLFKLERLFIFHNHI 182
L + ++ F SN+ + + + L +N +
Sbjct: 277 ALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLL 336
Query: 183 TGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLRLLDIAFNHFSGMIPPPIFNISS 242
T + + G+L+ L ++ N QL+ L + S
Sbjct: 337 TDTVFENCGHLTELETLILQMN----------QLKELSKIAEMTTQMK-----------S 375
Query: 243 LEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQF 302
L+ + +S+N + +L L+ + N T +I L R+++++ N+
Sbjct: 376 LQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKI 433
Query: 303 SGRVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQ 357
+ +L+ L LN+ N L + D + L++++ + N +
Sbjct: 434 K-SIPKQVVKLEALQELNVASNQLKSVPDGIFD------RLTSLQKIWLHTNPWD 481
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 71.2 bits (175), Expect = 5e-14
Identities = 45/216 (20%), Positives = 82/216 (37%), Gaps = 16/216 (7%)
Query: 218 NLRLLDIAFNHFSGMIPPPIF-NISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGN 276
+ + LD++FN + F + L+V+ LS ++ A +L +L L GN
Sbjct: 29 STKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGN 86
Query: 277 NFTGSIPVSL-SNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANELD 335
S+ + S S L+ + + + LK L LN+ N +
Sbjct: 87 PIQ-SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLI-----QSFK 140
Query: 336 FINLLANCSKLERLYFNRNRFQGVLPQSMANFSS---TIKQIAMGRNRISGTIPPGIRSH 392
+N + LE L + N+ Q + + + + N ++ I PG
Sbjct: 141 LPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKE 199
Query: 393 ANLNWLTMDSNLFTGTIPP-VIGELKNLQLLDLGGN 427
L L +D+N ++P + L +LQ + L N
Sbjct: 200 IRLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 234
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 58.4 bits (142), Expect = 9e-10
Identities = 48/212 (22%), Positives = 71/212 (33%), Gaps = 18/212 (8%)
Query: 124 LEGLVLSNNSFSGTIPTNLSRRSNLIELSVDTNYLVGEIPSAIGSLFKLERLFIFHNHIT 183
+ L LS N + L L + + A SL L L + N I
Sbjct: 30 TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89
Query: 184 GQLPASI-GNLSSLLAFDVRENILWGRIDSL-----VQLRNLRLLDIAFNHFSGMIPPPI 237
L LSSL E + SL L+ L+ L++A N P
Sbjct: 90 -SLALGAFSGLSSLQKLVAVET----NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY 144
Query: 238 F-NISSLEVISLSENRFTGSLPVDAGVNLPNLR----QLSPNGNNFTGSIPVSLSNASRL 292
F N+++LE + LS N+ S+ L + L + N I RL
Sbjct: 145 FSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRL 202
Query: 293 EMIEFSRNQFSGRVSVDFSRLKNLSFLNMGIN 324
+ + NQ F RL +L + + N
Sbjct: 203 KELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 51.5 bits (124), Expect = 1e-07
Identities = 44/231 (19%), Positives = 79/231 (34%), Gaps = 32/231 (13%)
Query: 138 IPTNLSRRSNLIELSVDTNYLVGEIPSAIGSLFKLERLFIFHNHITGQLPASI-GNLSSL 196
IP NL + L + N L + S +L+ L + I + +LS L
Sbjct: 22 IPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHL 78
Query: 197 LAFDVRENILWGRIDSL-----VQLRNLRLLDIAFNHFSGMIPPPIFNI-SSLEVISLSE 250
+ N I SL L +L+ L + + + +L+ ++++
Sbjct: 79 STLILTGN----PIQSLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAH 133
Query: 251 NRFTGSLPVDAGV--NLPNLRQLSPNGNNFTGSIPV----SLSNASRLEM-IEFSRNQFS 303
N S + NL NL L + N SI L L + ++ S N +
Sbjct: 134 NLIQ-SFKLP-EYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMN 190
Query: 304 GRVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRN 354
F + L L + N L + D + L++++ + N
Sbjct: 191 FIQPGAFKEI-RLKELALDTNQLKSVPDGIFD------RLTSLQKIWLHTN 234
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 42.7 bits (101), Expect = 1e-04
Identities = 38/217 (17%), Positives = 60/217 (27%), Gaps = 66/217 (30%)
Query: 233 IPPPIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRL 292
IP + S + + LS N L + + P L+ L + +I
Sbjct: 22 IPDNLP--FSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQ-TIEDGA------ 71
Query: 293 EMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFN 352
+ L +LS L + N + + + S L++L
Sbjct: 72 -----------------YQSLSHLSTLILTGNPIQSLALG------AFSGLSSLQKLVAV 108
Query: 353 RNRFQGVLPQSMANFSSTIKQIAMGRNRISGTIPPGIRSH-ANLNWLTMDSNLFTGTIPP 411
++ H L L + NL P
Sbjct: 109 ETNLA--------------------------SLENFPIGHLKTLKELNVAHNLIQSFKLP 142
Query: 412 -VIGELKNLQLLDLGGNFLQGSIP----SSLGNLTLL 443
L NL+ LDL N +Q SI L + LL
Sbjct: 143 EYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLL 178
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 70.7 bits (173), Expect = 1e-13
Identities = 45/268 (16%), Positives = 83/268 (30%), Gaps = 38/268 (14%)
Query: 72 RHQRVTRLDLRNQSIGGPLSPY---VGNLSFLRYINLANNGFLGEIPPQIGRLNM--LEG 126
+ + RL +R I + V +S L+ + L N G PP + L
Sbjct: 66 KSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNI 125
Query: 127 LVLSNNSFSGTIPTNLSRRSNLIELSVDTNYLVGEIPSAIGSLFKLERLFIFHNHITGQL 186
L L N S++ L+ ++ L+ L I H
Sbjct: 126 LNLRNVSWAT-RDAWLAELQQWLKPG-------------------LKVLSIAQAHSLNFS 165
Query: 187 PASIGNLSSLLAFDVRENILWGRI--------DSLVQLRNLRLLDIAFNHFSGMIPPPIF 238
+ +L D+ +N G L+ L L + SG+
Sbjct: 166 CEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAA 225
Query: 239 NISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFS 298
L+ + LS N + + L L+ + +P L ++L +++ S
Sbjct: 226 ARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLS 282
Query: 299 RNQFSGRVSVDFSRLKNLSFLNMGINNL 326
N+ + L + L++ N
Sbjct: 283 YNRLDR--NPSPDELPQVGNLSLKGNPF 308
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 69.2 bits (169), Expect = 3e-13
Identities = 47/280 (16%), Positives = 88/280 (31%), Gaps = 22/280 (7%)
Query: 167 GSLFKLERLFIFHNHITGQLP-ASIGNLSSLLAFDVREN----ILWGRIDSLVQLRNLRL 221
G LE L + I SL VR + ++ + L+
Sbjct: 40 GGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQE 99
Query: 222 LDIAFNHFSGMIPPPIFNIS--SLEVISLSENRFTGSLPVDAGVN---LPNLRQLSPNGN 276
L + +G PPP+ + L +++L + A + P L+ LS
Sbjct: 100 LTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQA 159
Query: 277 NFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFS----RLKNLSFLNMGINNLGTRTAN 332
+ + L ++ S N G + + + L L + +
Sbjct: 160 HSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGM---ETP 216
Query: 333 ELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNRISGTIPPGIRSH 392
L A +L+ L + N + ++ S + + + + +P G+ +
Sbjct: 217 SGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLPA- 274
Query: 393 ANLNWLTMDSNLFTGTIPPVIGELKNLQLLDLGGNFLQGS 432
L+ L + N P EL + L L GN S
Sbjct: 275 -KLSVLDLSYNRLDRN--PSPDELPQVGNLSLKGNPFLDS 311
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 44.1 bits (104), Expect = 4e-05
Identities = 28/211 (13%), Positives = 58/211 (27%), Gaps = 15/211 (7%)
Query: 239 NISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLS---NASRLEMI 295
SLE + + + +L++L+ I S L+ +
Sbjct: 41 GGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQEL 100
Query: 296 EFSRNQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSK--LERLYFNR 353
+ +G + + N+ A ++ L K L+ L +
Sbjct: 101 TLENLEVTGTAPPPLLEATGPDLNILNLRNV--SWATRDAWLAELQQWLKPGLKVLSIAQ 158
Query: 354 NRFQGVLPQSMANFSSTIKQIAMGRNRISGTIPPGI----RSHANLNWLTMDSNLFT--- 406
+ + F + + + + N G L L + +
Sbjct: 159 AHSLNFSCEQVRVFPA-LSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPS 217
Query: 407 GTIPPVIGELKNLQLLDLGGNFLQGSIPSSL 437
G + LQ LDL N L+ + +
Sbjct: 218 GVCSALAAARVQLQGLDLSHNSLRDAAGAPS 248
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 40.7 bits (95), Expect = 5e-04
Identities = 34/235 (14%), Positives = 68/235 (28%), Gaps = 14/235 (5%)
Query: 221 LLDIAFNHFSGMIPPPIFNISSLEVISLSENRFTGSLPVD--AGVNLPNLRQLSPNGNNF 278
LL I SL+ +++ R + + + L++L+
Sbjct: 48 LLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEV 107
Query: 279 TGSIPVSLSNASRLEMIEFSRNQFSGRVSVDF-SRLKNLSFLNMGINNLGTRTANELDFI 337
TG+ P L A+ ++ + S + + L+ + + ++ +
Sbjct: 108 TGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSC- 166
Query: 338 NLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAM------GRNRISGTIPPGIRS 391
+ L L + N G A + + G SG +
Sbjct: 167 EQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAA 226
Query: 392 HANLNWLTMDSNLFTGTIPPVIGE-LKNLQLLDLGGNFLQ---GSIPSSLGNLTL 442
L L + N + L L+L L+ +P+ L L L
Sbjct: 227 RVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPAKLSVLDL 281
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 40.3 bits (94), Expect = 8e-04
Identities = 23/163 (14%), Positives = 42/163 (25%), Gaps = 6/163 (3%)
Query: 277 NFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANELDF 336
N G+ V L R R + +K+LS + + +
Sbjct: 29 NCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGA 88
Query: 337 INLLANCSKLERLYFNRNRFQGVLPQSMANFSST-IKQIAMGRNRISGTIPP----GIRS 391
+ +L S L+ L G P + + + + + +
Sbjct: 89 LRVL-GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWL 147
Query: 392 HANLNWLTMDSNLFTGTIPPVIGELKNLQLLDLGGNFLQGSIP 434
L L++ + L LDL N G
Sbjct: 148 KPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERG 190
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 70.1 bits (172), Expect = 2e-13
Identities = 48/276 (17%), Positives = 96/276 (34%), Gaps = 49/276 (17%)
Query: 168 SLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLRLLDIAFN 227
+L ++ +++T + +L + + I+ + L NL L++ N
Sbjct: 17 ALANAIKIAAGKSNVTD--TVTQADLDGITTLSAFGTGV-TTIEGVQYLNNLIGLELKDN 73
Query: 228 HFSGMIPPPIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLS 287
+ + P+ N++ + + LS N + L +++ L T P L+
Sbjct: 74 QITDL--APLKNLTKITELELSGNPLKNVSAIA---GLQSIKTLDLTSTQITDVTP--LA 126
Query: 288 NASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLE 347
S L+++ NQ + + L NL +L++G + + LAN SKL
Sbjct: 127 GLSNLQVLYLDLNQIT--NISPLAGLTNLQYLSIGNAQVSD--------LTPLANLSKLT 176
Query: 348 RLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNRISGTIPPGIRSHANLNWLTMDSNLFTG 407
L + N+ I I + S NL + + +N +
Sbjct: 177 TLKADDNK---------------ISDI------------SPLASLPNLIEVHLKNNQISD 209
Query: 408 TIPPVIGELKNLQLLDLGGNFLQGSIPSSLGNLTLL 443
P + NL ++ L + NL +
Sbjct: 210 VSP--LANTSNLFIVTLTNQTITNQPVFYNNNLVVP 243
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 58.9 bits (143), Expect = 8e-10
Identities = 42/240 (17%), Positives = 81/240 (33%), Gaps = 34/240 (14%)
Query: 76 VTRLDLRNQSIGGPLSPYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFS 135
++ ++ +L + ++ G + I + LN L GL L +N
Sbjct: 21 AIKIAAGKSNVTDT--VTQADLDGITTLSAFGTG-VTTIEG-VQYLNNLIGLELKDNQI- 75
Query: 136 GTIPTNLSRRSNLIELSVDTNYLVGEIPSAIGSLFKLERLFIFHNHITGQLP-------- 187
T L + + EL + N L + SAI L ++ L + IT P
Sbjct: 76 -TDLAPLKNLTKITELELSGNPL--KNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQ 132
Query: 188 ------------ASIGNLSSLLAFDVRENILWGRIDSLVQLRNLRLLDIAFNHFSGMIPP 235
+ + L++L + + + L L L L N S +
Sbjct: 133 VLYLDLNQITNISPLAGLTNLQYLSIGNAQV-SDLTPLANLSKLTTLKADDNKISDI--S 189
Query: 236 PIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMI 295
P+ ++ +L + L N+ + P+ N NL ++ T +N ++
Sbjct: 190 PLASLPNLIEVHLKNNQISDVSPLA---NTSNLFIVTLTNQTITNQPVFYNNNLVVPNVV 246
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 70.9 bits (173), Expect = 3e-13
Identities = 46/235 (19%), Positives = 88/235 (37%), Gaps = 24/235 (10%)
Query: 209 RIDSLVQLRNLRLLDIAFNHFSGMIPPPIFNISSLEVISLSENRFTGSLPVDAGVNLPNL 268
+I ++ + + ++S++ I + + + LPN+
Sbjct: 13 QIFPDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQGIQ---YLPNV 67
Query: 269 RQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLGT 328
+L NGN T I L+N L + N+ +S LK L L++ N +
Sbjct: 68 TKLFLNGNKLT-DIK-PLTNLKNLGWLFLDENKIK-DLS-SLKDLKKLKSLSLEHNGISD 123
Query: 329 RTANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNRISGTIPPG 388
IN L + +LE LY N+ + ++ + + +++ N+IS I P
Sbjct: 124 --------INGLVHLPQLESLYLGNNKITDI--TVLSRLTK-LDTLSLEDNQIS-DIVP- 170
Query: 389 IRSHANLNWLTMDSNLFTGTIPPVIGELKNLQLLDLGGNFLQGSIPSSLGNLTLL 443
+ L L + N + + + LKNL +L+L + NL +
Sbjct: 171 LAGLTKLQNLYLSKNHIS-DLRA-LAGLKNLDVLELFSQECLNKPINHQSNLVVP 223
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 69.0 bits (168), Expect = 1e-12
Identities = 43/218 (19%), Positives = 87/218 (39%), Gaps = 18/218 (8%)
Query: 124 LEGLVLSNNSFSGTIPTNLSRRSNLIELSVDTNYLVGEIPSAIGSLFKLERLFIFHNHIT 183
L S + + + +++ ++ + + + + I L + +LF+ N +T
Sbjct: 23 TIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SV-QGIQYLPNVTKLFLNGNKLT 78
Query: 184 GQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLRLLDIAFNHFSGMIPPPIFNISSL 243
P + NL +L + EN + + SL L+ L+ L + N S + + ++ L
Sbjct: 79 DIKP--LTNLKNLGWLFLDENKI-KDLSSLKDLKKLKSLSLEHNGISDI--NGLVHLPQL 133
Query: 244 EVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFS 303
E + L N+ T + L L LS N + I L+ ++L+ + S+N S
Sbjct: 134 ESLYLGNNKITDITVLS---RLTKLDTLSLEDNQIS-DIV-PLAGLTKLQNLYLSKNHIS 188
Query: 304 GRVSVD-FSRLKNLSFLNMGINNLGTRTANELDFINLL 340
+ + LKNL L + + N + +
Sbjct: 189 ---DLRALAGLKNLDVLELFSQECLNKPINHQSNLVVP 223
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 61.3 bits (148), Expect = 3e-10
Identities = 45/258 (17%), Positives = 97/258 (37%), Gaps = 15/258 (5%)
Query: 77 TRLDLRNQSIGGPLSPYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSG 136
T+L L + + P + NL L ++ L N + ++ + L L+ L L +N S
Sbjct: 68 TKLFLNGNKLTD-IKP-LTNLKNLGWLFLDENK-IKDLSS-LKDLKKLKSLSLEHNGIS- 122
Query: 137 TIPTNLSRRSNLIELSVDTNYLVGEIPSAIGSLFKLERLFIFHNHITGQLPASIGNLSSL 196
I L L L + N + + + L KL+ L + N I+ +P + L+ L
Sbjct: 123 DI-NGLVHLPQLESLYLGNNKI--TDITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKL 177
Query: 197 LAFDVRENILWGRIDSLVQLRNLRLLDIAFNHFSGMIPPPIFNISSLEVISLSENRFTGS 256
+ +N + + +L L+NL +L++ N+ + ++
Sbjct: 178 QNLYLSKNHI-SDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTP 236
Query: 257 LPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNL 316
+ + + + + + + VS + + + ++ +F GRV+ + +
Sbjct: 237 EIIS---DDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGK-AKARFHGRVTQPLKEVYTV 292
Query: 317 SFLNMGINNLGTRTANEL 334
S+ G A
Sbjct: 293 SYDVDGTVIKTKVEAGTR 310
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 66.5 bits (163), Expect = 6e-13
Identities = 35/182 (19%), Positives = 63/182 (34%), Gaps = 9/182 (4%)
Query: 74 QRVTRLDLRNQSIGGPLSPYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNS 133
+ L S + ++ L YI LAN + ++ I + ++ L ++N
Sbjct: 23 KAYLNGLLGQSSTA---NITEAQMNSLTYITLANIN-VTDLTG-IEYAHNIKDLTINNIH 77
Query: 134 FSGTIPTNLSRRSNLIELSVDTNYLVGEIPSAIGSLFKLERLFIFHNHITGQLPASIGNL 193
+ +S SNL L + + + + L L L I H+ + I L
Sbjct: 78 ATNY--NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTL 135
Query: 194 SSLLAFDVRENILWGRIDSLVQLRNLRLLDIAFNHFSGMIPPPIFNISSLEVISLSENRF 253
+ + D+ N I L L L+ L+I F+ I + L +
Sbjct: 136 PKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDY--RGIEDFPKLNQLYAFSQTI 193
Query: 254 TG 255
G
Sbjct: 194 GG 195
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 57.7 bits (140), Expect = 5e-10
Identities = 22/144 (15%), Positives = 57/144 (39%), Gaps = 12/144 (8%)
Query: 212 SLVQLRNLRLLDIAFNHFSGMIPPPIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQL 271
+ Q+ +L + +A + + + I +++ ++++ T P+ L NL +L
Sbjct: 39 TEAQMNSLTYITLANINVTDL--TGIEYAHNIKDLTINNIHATNYNPIS---GLSNLERL 93
Query: 272 SPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLGTRTA 331
G + T +LS + L +++ S + + + L ++ +++ N
Sbjct: 94 RIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGA----- 148
Query: 332 NELDFINLLANCSKLERLYFNRNR 355
+ I L +L+ L +
Sbjct: 149 --ITDIMPLKTLPELKSLNIQFDG 170
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 56.9 bits (138), Expect = 1e-09
Identities = 22/180 (12%), Positives = 56/180 (31%), Gaps = 15/180 (8%)
Query: 266 PNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVD-FSRLKNLSFLNMGIN 324
+ + + ++ + + L I + + + N+ L +
Sbjct: 20 STFKAYLNGLLGQSSTANITEAQMNSLTYITLANINVT---DLTGIEYAHNIKDLTINNI 76
Query: 325 NLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNRISGT 384
+ N ++ S LERL +++ +S + + + + +
Sbjct: 77 HATN--------YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTS-LTLLDISHSAHDDS 127
Query: 385 IPPGIRSHANLNWLTMDSNLFTGTIPPVIGELKNLQLLDLGGNFLQGSIP-SSLGNLTLL 443
I I + +N + + N I P + L L+ L++ + + L L
Sbjct: 128 ILTKINTLPKVNSIDLSYNGAITDIMP-LKTLPELKSLNIQFDGVHDYRGIEDFPKLNQL 186
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 54.2 bits (131), Expect = 9e-09
Identities = 22/162 (13%), Positives = 50/162 (30%), Gaps = 7/162 (4%)
Query: 166 IGSLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLRLLDIA 225
+ L + + + ++T I ++ + + + L NL L I
Sbjct: 40 EAQMNSLTYITLANINVTDLTG--IEYAHNIKDLTINNIHA-TNYNPISGLSNLERLRIM 96
Query: 226 FNHFSGMIPPPIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVS 285
+ P + ++SL ++ +S + S + LP + + + N I
Sbjct: 97 GKDVTSDKIPNLSGLTSLTLLDISHSAHDDS-ILTKINTLPKVNSIDLSYNGAITDIM-P 154
Query: 286 LSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLG 327
L L+ + + L+ L +G
Sbjct: 155 LKTLPELKSLNIQFDGVHD--YRGIEDFPKLNQLYAFSQTIG 194
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 65.2 bits (159), Expect = 7e-12
Identities = 41/230 (17%), Positives = 65/230 (28%), Gaps = 11/230 (4%)
Query: 217 RNLRLLDIAFNHFSGMIPPPIF-NISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNG 275
RN L +I F LE I +S+N + D NLP L ++
Sbjct: 30 RNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88
Query: 276 NNFTGSIPVS-LSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANEL 334
N I N L+ + S V L++ N
Sbjct: 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNS 148
Query: 335 DFINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNRISGTIPPGIRSHA- 393
F+ L + L+ N+N Q + S N + + N + +P + A
Sbjct: 149 -FVGL---SFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLE-ELPNDVFHGAS 202
Query: 394 NLNWLTMDSNLFTGTIPPVIGELKNLQLLDLGGNFLQGSIPSSLGNLTLL 443
L + + LK L+ N + L L
Sbjct: 203 GPVILDISRTRIHSLPSYGLENLKKLRARST-YNLKKLPTLEKLVALMEA 251
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 54.8 bits (132), Expect = 2e-08
Identities = 39/206 (18%), Positives = 73/206 (35%), Gaps = 16/206 (7%)
Query: 75 RVTRLDLRNQSIGGPLSPYV-GNLSFLRYINLANNGFLGEIPPQI-GRLNMLEGLVLSNN 132
+ ++++ + + V NL L I + L I P+ L L+ L++SN
Sbjct: 55 DLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNT 114
Query: 133 SFSGTIPTNLSRRS-NLIELSVDTNYLVGEIPS-AIGSL-FKLERLFIFHNHITGQLPAS 189
+P S + L + N + I + L F+ L++ N I ++ S
Sbjct: 115 GIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNS 172
Query: 190 IGNLSSLLAFDVRENILWGRI--DSLVQLRNLRLLDIAFNHFSGMIPPPIF-NISSLEVI 246
N + L ++ +N + D +LDI+ +P N+ L
Sbjct: 173 AFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSYGLENLKKLRAR 231
Query: 247 SLSENRFTGSLPVDAGVNLPNLRQLS 272
S + +L L L + S
Sbjct: 232 STYNLKKLPTL-----EKLVALMEAS 252
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 53.7 bits (129), Expect = 5e-08
Identities = 46/232 (19%), Positives = 76/232 (32%), Gaps = 14/232 (6%)
Query: 100 LRYINLANNGFLGEIPPQI-GRLNMLEGLVLSNNSFSGTIPTN-LSRRSNLIELSV-DTN 156
+ L I LE + +S N I + S L E+ + N
Sbjct: 32 AIELRFVLTK-LRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 90
Query: 157 YLVGEIPSAIGSLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRI--DSLV 214
L+ P A +L L+ L I + I + + D+++NI I +S V
Sbjct: 91 NLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFV 150
Query: 215 QLR-NLRLLDIAFNHFSGMIPPPIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSP 273
L +L + N I FN + L+ ++LS+N LP D L
Sbjct: 151 GLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDI 209
Query: 274 NGNNFTGSIPV-SLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGIN 324
+ S+P L N +L + +L L ++
Sbjct: 210 SRTRIH-SLPSYGLENLKKLRARSTYNLKKLP----TLEKLVALMEASLTYP 256
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 59.6 bits (145), Expect = 2e-10
Identities = 36/209 (17%), Positives = 74/209 (35%), Gaps = 14/209 (6%)
Query: 241 SSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPV-SLSNASRLEMIEFSR 299
S + + L E ++P A NLPN+ ++ + + + S N S++ IE
Sbjct: 31 PSTQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRN 89
Query: 300 NQFSGRVSVD-FSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQG 358
+ + D L L FL + L + + + L N +
Sbjct: 90 TRNLTYIDPDALKELPLLKFLGIFNTGL-----KMFPDLTKVYSTDIFFILEITDNPYMT 144
Query: 359 VLPQSM-ANFSSTIKQIAMGRNRISGTIPPGIRSHANLNWLTMDSNLFTGTIPPVI--GE 415
+P + + + + N + ++ + L+ + ++ N + I G
Sbjct: 145 SIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGV 203
Query: 416 LKNLQLLDLGGNFLQGSIPS-SLGNLTLL 443
LLD+ + ++PS L +L L
Sbjct: 204 YSGPSLLDVSQTSVT-ALPSKGLEHLKEL 231
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 50.0 bits (120), Expect = 4e-07
Identities = 32/195 (16%), Positives = 70/195 (35%), Gaps = 33/195 (16%)
Query: 96 NLSFLRYINLANNGFLGEIPPQI-GRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSVD 154
NL + I ++ + L ++ L+ + + + N I
Sbjct: 53 NLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYID--------------- 97
Query: 155 TNYLVGEIPSAIGSLFKLERLFIFHNHITGQLPA--SIGNLSSLLAFDVRENILWGRI-- 210
P A+ L L+ L IF+ + P + + ++ +N I
Sbjct: 98 --------PDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSIPV 148
Query: 211 DSLVQLRN-LRLLDIAFNHFSGMIPPPIFNISSLEVISLSENRFTGSLPVDAGVNLPN-L 268
++ L N L + N F+ + FN + L+ + L++N++ + DA + +
Sbjct: 149 NAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGP 207
Query: 269 RQLSPNGNNFTGSIP 283
L + + T ++P
Sbjct: 208 SLLDVSQTSVT-ALP 221
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 47.3 bits (113), Expect = 3e-06
Identities = 31/185 (16%), Positives = 68/185 (36%), Gaps = 15/185 (8%)
Query: 211 DSLVQLRNLRLLDIAFNHFSGMIPPPIF-NISSLEVISLSENRFTGSLPVDAGVNLPNLR 269
+ L N+ + ++ + + F N+S + I + R + DA LP L+
Sbjct: 49 HAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLK 108
Query: 270 QLSPNGNNFTGSIP--VSLSNASRLEMIEFSRNQFSGRVSVD-FSRLKNLSF-LNMGINN 325
L P + + ++E + N + + V+ F L N + L + N
Sbjct: 109 FLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNG 167
Query: 326 LGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQSM-ANFSSTIKQIAMGRNRISGT 384
+ N +KL+ +Y N+N++ V+ + S + + + ++
Sbjct: 168 FTSVQGYAF-------NGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-A 219
Query: 385 IPPGI 389
+P
Sbjct: 220 LPSKG 224
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 45.8 bits (109), Expect = 9e-06
Identities = 38/183 (20%), Positives = 64/183 (34%), Gaps = 29/183 (15%)
Query: 96 NLSFLRYINLANNGFLGEIPPQI-GRLNMLEGLVLSNNSFSGTIP--TNLSRRSNLIELS 152
NLS + +I + N L I P L +L+ L + N P T + L
Sbjct: 78 NLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILE 136
Query: 153 VDTNYLVGEIPS-AIGSLFK-LERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRI 210
+ N + IP A L L +++N T + N + L
Sbjct: 137 ITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKL-------------- 181
Query: 211 DSLVQLRNLRLLDIAFNHFSGMIPPPIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQ 270
D++ +N L I + F G+ S ++ +S+ T +LP +L L
Sbjct: 182 DAVYLNKNKYLTVIDKDAFGGV-------YSGPSLLDVSQTSVT-ALPSKGLEHLKELIA 233
Query: 271 LSP 273
+
Sbjct: 234 RNT 236
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 61.4 bits (148), Expect = 3e-10
Identities = 79/431 (18%), Positives = 139/431 (32%), Gaps = 111/431 (25%)
Query: 1 MLSPISIFCCLATLSLSLLLHSHKTICANSNET-DRLA-LLAIK------LQLHDPLGVT 52
+L + + + I + L LL K L L + V
Sbjct: 198 VLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLN---VQ 254
Query: 53 SSWN-NSMSL-CQWTGVTCGRRHQRVTRLDLRNQSIGGPLSPYVGNLS-------FLRYI 103
++ N+ +L C+ +T R ++VT + L + L+ L+Y+
Sbjct: 255 NAKAWNAFNLSCK-ILLTT--RFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL 311
Query: 104 NLANNGFLGEIPPQIGRLNMLE----GLVLSN--NSFSGTIPTNLSRRSNLIELSVDTNY 157
+ ++P ++ N + + ++ N + + +IE S+ N
Sbjct: 312 DCR----PQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSL--NV 365
Query: 158 LVGEIPSAIGSLFKLERLFIF--HNHITGQLPASIGNLSSLLAFDVRENILWGRIDS--- 212
L P+ +F +RL +F HI L LS ++W +
Sbjct: 366 LE---PAEYRKMF--DRLSVFPPSAHIPTIL------LS----------LIWFDVIKSDV 404
Query: 213 ---LVQLRNLRLLDIAFNHFSGMIPPPIFNISSLEVISLSENRFT--GSLPVDAGVNLPN 267
+ +L L++ + IP +I LE+ EN + S+ VD N+P
Sbjct: 405 MVVVNKLHKYSLVEKQPKESTISIP----SIY-LELKVKLENEYALHRSI-VDH-YNIP- 456
Query: 268 LRQLSPNG-------NNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLN 320
+ + F I L N E + R F +DF FL
Sbjct: 457 -KTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVF-----LDFR------FLE 504
Query: 321 MGINNLGTRTANELDFINLLA-----------NCSKLERLYFNRNRFQGVLPQSMANF-- 367
I + T +N L N K ERL F LP+ N
Sbjct: 505 QKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDF---LPKIEENLIC 561
Query: 368 --SSTIKQIAM 376
+ + +IA+
Sbjct: 562 SKYTDLLRIAL 572
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 59.7 bits (145), Expect = 4e-10
Identities = 46/234 (19%), Positives = 86/234 (36%), Gaps = 24/234 (10%)
Query: 210 IDSLVQLRNLRLLDIAFNHFSGMIPPPIFNISSLEVISLSENRFTGSLPVDAGVNLPNLR 269
I S ++ + + ++S++ I + + + LPN+
Sbjct: 17 IFSDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQGIQ---YLPNVT 71
Query: 270 QLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLGTR 329
+L NGN T I L+N L + N+ LK L L++ N +
Sbjct: 72 KLFLNGNKLT-DIK-PLANLKNLGWLFLDENKVK--DLSSLKDLKKLKSLSLEHNGISD- 126
Query: 330 TANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNRISGTIPPGI 389
IN L + +LE LY N+ + ++ + + +++ N+IS I P +
Sbjct: 127 -------INGLVHLPQLESLYLGNNKITDI--TVLSRLTK-LDTLSLEDNQIS-DIVP-L 174
Query: 390 RSHANLNWLTMDSNLFTGTIPPVIGELKNLQLLDLGGNFLQGSIPSSLGNLTLL 443
L L + N + + + LKNL +L+L + NL +
Sbjct: 175 AGLTKLQNLYLSKNHIS-DLRA-LAGLKNLDVLELFSQECLNKPINHQSNLVVP 226
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 55.8 bits (135), Expect = 8e-09
Identities = 38/192 (19%), Positives = 79/192 (41%), Gaps = 20/192 (10%)
Query: 164 SAIGSLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLRLLD 223
+ + + + + +T + L+S+ + + + + L N+ L
Sbjct: 18 FSDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDI-KSVQGIQYLPNVTKLF 74
Query: 224 IAFNHFSGMIPPPIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIP 283
+ N + + P+ N+ +L + L EN+ + +L L+ LS N + I
Sbjct: 75 LNGNKLTDI--KPLANLKNLGWLFLDENKVKDLSSLK---DLKKLKSLSLEHNGIS-DIN 128
Query: 284 VSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANC 343
L + +LE + N+ + ++V SRL L L++ N++ I LA
Sbjct: 129 -GLVHLPQLESLYLGNNKIT-DITV-LSRLTKLDTLSLE--------DNQISDIVPLAGL 177
Query: 344 SKLERLYFNRNR 355
+KL+ LY ++N
Sbjct: 178 TKLQNLYLSKNH 189
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 49.7 bits (119), Expect = 8e-07
Identities = 42/235 (17%), Positives = 86/235 (36%), Gaps = 23/235 (9%)
Query: 77 TRLDLRNQSIGGPLSPYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSG 136
T+L L + + P + NL L ++ L N + ++ + L L+ L L +N S
Sbjct: 71 TKLFLNGNKLTD-IKP-LANLKNLGWLFLDENK-VKDLSS-LKDLKKLKSLSLEHNGIS- 125
Query: 137 TIPTNLSRRSNLIELSVDTNYLVGEIPSAIGSLFKLERLFIFHNHITGQLPASIGNLSSL 196
I L L L + N + + + L KL+ L + N I+ + + L+ L
Sbjct: 126 DI-NGLVHLPQLESLYLGNNKI--TDITVLSRLTKLDTLSLEDNQIS-DIV-PLAGLTKL 180
Query: 197 LAFDVRENILWGRIDSLVQLRNLRLLDIAFNHFSGMIPPPIFNISSLEVISLSENRFTGS 256
+ +N + + +L L+NL +L++ N+ + ++
Sbjct: 181 QNLYLSKNHI-SDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDG----- 234
Query: 257 LPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFS 311
+L +S +G+ ++ L + F + G+ F
Sbjct: 235 -------SLVTPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKARFH 282
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 59.0 bits (143), Expect = 7e-10
Identities = 42/198 (21%), Positives = 78/198 (39%), Gaps = 20/198 (10%)
Query: 233 IPPPIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRL 292
+PP + ++ LSEN + + + L QL+ + T + V L
Sbjct: 25 LPPDLP--KDTTILHLSENLLY-TFSLATLMPYTRLTQLNLDRAELT-KLQVD-GTLPVL 79
Query: 293 EMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFN 352
++ S NQ + + L L+ L++ N L + L +L+ LY
Sbjct: 80 GTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLG------ALRGLGELQELYLK 132
Query: 353 RNRFQGVLPQSMANFSST--IKQIAMGRNRISGTIPPGIRSH-ANLNWLTMDSNLFTGTI 409
N + LP + + T ++++++ N ++ +P G+ + NL+ L + N TI
Sbjct: 133 GNELK-TLPPGL--LTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLY-TI 187
Query: 410 PPVIGELKNLQLLDLGGN 427
P L L GN
Sbjct: 188 PKGFFGSHLLPFAFLHGN 205
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 57.4 bits (139), Expect = 2e-09
Identities = 42/203 (20%), Positives = 61/203 (30%), Gaps = 32/203 (15%)
Query: 100 LRYINLANNGFLGEIPPQI-GRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSVDTNYL 158
++L+ N L L L L + + L L + N L
Sbjct: 33 TTILHLSENL-LYTFSLATLMPYTRLTQLNLDRAELT-KLQV-DGTLPVLGTLDLSHNQL 89
Query: 159 VGEIPSAIGSLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRN 218
+P +L L L + N +T LP A L
Sbjct: 90 Q-SLPLLGQTLPALTVLDVSFNRLT-SLPLG--------ALR--------------GLGE 125
Query: 219 LRLLDIAFNHFSGMIPPPIF-NISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNN 277
L+ L + N +PP + LE +SL+ N T LP L NL L N+
Sbjct: 126 LQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENS 183
Query: 278 FTGSIPVSLSNASRLEMIEFSRN 300
+IP + L N
Sbjct: 184 LY-TIPKGFFGSHLLPFAFLHGN 205
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 52.4 bits (126), Expect = 9e-08
Identities = 38/193 (19%), Positives = 70/193 (36%), Gaps = 24/193 (12%)
Query: 258 PVDAGVNLPNLRQLSPNGNNFTGSIPVSL-SNASRLEMIEFSRNQFSGRVSVDFSRLKNL 316
P+ + + +++ + N T ++P L + + L + S N L
Sbjct: 2 PICEVSKVASHLEVNCDKRNLT-ALPPDLPKDTTILHL---SENLLYTFSLATLMPYTRL 57
Query: 317 SFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAM 376
+ LN+ L + + L L + N+ Q LP + + +
Sbjct: 58 TQLNLDRAELTK--------LQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPAL-TVLDV 107
Query: 377 GRNRISGTIPPGIRSH-ANLNWLTMDSNLFTGTIPP-VIGELKNLQLLDLGGNFLQGSIP 434
NR++ ++P G L L + N T+PP ++ L+ L L N L +P
Sbjct: 108 SFNRLT-SLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNLT-ELP 164
Query: 435 S----SLGNLTLL 443
+ L NL L
Sbjct: 165 AGLLNGLENLDTL 177
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 59.9 bits (145), Expect = 8e-10
Identities = 66/370 (17%), Positives = 131/370 (35%), Gaps = 30/370 (8%)
Query: 77 TRLDLRNQSI-GGPLSPYVGNLSFLRYINLANNGFLGEIPPQIGRLN--MLEGLVLSNNS 133
T L L L P ++L + G + N +L + N+
Sbjct: 149 TFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSL 208
Query: 134 FSGTIPTNLSRRSNL----IELSVDTNYLVGEIPSAIGSLFKLERLFIFHNHITGQLPAS 189
FS + +++ +L I+L+ + + S + L + + H T +
Sbjct: 209 FSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVK 268
Query: 190 IGNL---SSLLAFDVRENILWGRID------SLVQLRNLRLLDIAFNHFSGMIPPPIFNI 240
+ + ++ + RID S L++L + + F
Sbjct: 269 LFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVF 328
Query: 241 SSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRN 300
+ + + LS + T + + + + L+ N FT S+ S RL+ + RN
Sbjct: 329 AEMNIKMLSISD-TPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRN 387
Query: 301 QFS--GRVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQG 358
+V++ + +L L++ +N+L N + A + L + N G
Sbjct: 388 GLKNFFKVALMTKNMSSLETLDVSLNSL-----NSHAYDRTCAWAESILVLNLSSNMLTG 442
Query: 359 VLPQSMANFSSTIKQIAMGRNRISGTIPPGIRSHANLNWLTMDSNLFTGTIPP-VIGELK 417
+ + +K + + NRI +IP + L L + SN ++P V L
Sbjct: 443 SVFRC---LPPKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLT 497
Query: 418 NLQLLDLGGN 427
+LQ + L N
Sbjct: 498 SLQYIWLHDN 507
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 57.6 bits (139), Expect = 4e-09
Identities = 57/338 (16%), Positives = 104/338 (30%), Gaps = 32/338 (9%)
Query: 4 PISIFCCLATLSLSLLLHSHKTICANSNETDRLALLAIKLQLHDPLGVTSSWNNSMSLCQ 63
T L L+ H + N + L LQL + N+
Sbjct: 187 ETESLQIPNTTVLHLVFHPNSLFSVQVN--MSVNALGH-LQLSN-----IKLNDENCQRL 238
Query: 64 WTGVTCGRRHQRVTRLDLRNQSIGGPLSPYVGNL---SFLRYINLANNGFLGEIPPQIGR 120
T ++ R + + L++ S + + Y+N+ N I +
Sbjct: 239 MTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFT 298
Query: 121 -----LNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSVDTNYLVGEIPSAIGSLFKLERL 175
L L + N F + S + + + + S L
Sbjct: 299 YSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFL 358
Query: 176 FIFHNHITGQLPASIGNLSSLLAFDVREN---ILWGRIDSLVQLRNLRLLDIAFNHFSGM 232
N T + L L ++ N + + +L LD++ N +
Sbjct: 359 NFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSH 418
Query: 233 IPPPIFNI-SSLEVISLSENRFTG----SLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLS 287
S+ V++LS N TG LP P ++ L + N SIP ++
Sbjct: 419 AYDRTCAWAESILVLNLSSNMLTGSVFRCLP-------PKVKVLDLHNNRIM-SIPKDVT 470
Query: 288 NASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINN 325
+ L+ + + NQ F RL +L ++ + N
Sbjct: 471 HLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNP 508
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 53.7 bits (129), Expect = 6e-08
Identities = 60/388 (15%), Positives = 116/388 (29%), Gaps = 53/388 (13%)
Query: 76 VTRLDLRNQSIGGPLSPYV-GNLSFLRYINLANNGFLGEIPPQI-GRLNMLEGLVLSNNS 133
L L SI L LS LR + L++N + + + LE L +S+N
Sbjct: 54 TKALSLSQNSISE-LRMPDISFLSELRVLRLSHNR-IRSLDFHVFLFNQDLEYLDVSHNR 111
Query: 134 FSGTIPTNLSRRSNLIELSVDTNYL-VGEIPSAIGSLFKLERLFIFHNHIT--------- 183
++ +L L + N V + G+L KL L +
Sbjct: 112 LQNISCCPMA---SLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAH 168
Query: 184 GQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLRLLDIAFNHFSGMIPPPIFNISSL 243
L + +L S L +++ L + + +S++
Sbjct: 169 LHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNI 228
Query: 244 EVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSN---ASRLEMIEFSRN 300
++ + R L P L ++ T V L +E +
Sbjct: 229 KLNDENCQRLMTFLS--ELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNL 286
Query: 301 QFSGRVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVL 360
+ R+ + + ++ I ++ L + +++ + +
Sbjct: 287 TITERIDREEFTYSETALKSLMIEHV-KNQVFLFSKEALYSVFAEMNIKMLSISD----- 340
Query: 361 PQSMANFSSTIKQIAMGRNRISGTIPPGIRSHANLNWLTMDSNLFTGTIPPVIGELKNLQ 420
I M P S + +L N+FT ++ LK LQ
Sbjct: 341 ----------TPFIHMV--------CPPSPS--SFTFLNFTQNVFTDSVFQGCSTLKRLQ 380
Query: 421 LLDLGGNFLQ-----GSIPSSLGNLTLL 443
L L N L+ + ++ +L L
Sbjct: 381 TLILQRNGLKNFFKVALMTKNMSSLETL 408
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 49.1 bits (117), Expect = 2e-06
Identities = 30/207 (14%), Positives = 61/207 (29%), Gaps = 32/207 (15%)
Query: 76 VTRLDLRNQSIGGPLSPYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFS 135
+ L + S ++N N F + L L+ L+L N
Sbjct: 331 MNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK 390
Query: 136 GTIPTNLSRRSNLIELSVDTNYLV----GEIPSAIGSLFKLERLFIFHNHITGQLPASIG 191
N+ L L + L + N +TG
Sbjct: 391 -NFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTG------- 442
Query: 192 NLSSLLAFDVRENILWGRIDSLVQLRNLRLLDIAFNHFSGMIPPPIFNISSLEVISLSEN 251
L +++LD+ N IP + ++ +L+ ++++ N
Sbjct: 443 ----------------SVFRCLPP--KVKVLDLHNNRIMS-IPKDVTHLQALQELNVASN 483
Query: 252 RFTGSLPVDAGVNLPNLRQLSPNGNNF 278
+ S+P L +L+ + + N +
Sbjct: 484 QLK-SVPDGVFDRLTSLQYIWLHDNPW 509
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 57.3 bits (139), Expect = 2e-09
Identities = 51/223 (22%), Positives = 80/223 (35%), Gaps = 42/223 (18%)
Query: 137 TIPTNLSRRSNLIELSVDTNYLVGEIPSAIGSLFKLERLFIFHNHITGQLPASIGNLSSL 196
IP+N+ ++ +L + +N L A L KL L++ N + LPA
Sbjct: 30 AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAG------- 79
Query: 197 LAFDVRENILWGRIDSLVQLRNLRLLDIAFNHFSGMIPPPIF-NISSLEVISLSENRFTG 255
F +L+NL L + N +P +F + +L + L N+
Sbjct: 80 -IFK--------------ELKNLETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLK- 122
Query: 256 SLPVDAGVNLPNLRQLSPNGNNFTGSIPV----SLSNASRLEMIEFSRNQFSGRVSVDFS 311
SLP +L L LS N S+P L++ L+ + NQ F
Sbjct: 123 SLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTS---LKELRLYNNQLKRVPEGAFD 178
Query: 312 RLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRN 354
+L L L + N L D + KL+ L N
Sbjct: 179 KLTELKTLKLDNNQLKRVPEGAFD------SLEKLKMLQLQEN 215
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 54.2 bits (131), Expect = 2e-08
Identities = 47/200 (23%), Positives = 72/200 (36%), Gaps = 28/200 (14%)
Query: 127 LVLSNNSFSGTIPTNLSRRSNLIELSVDTNYLVGEIPSAIGSLFKLERLFIFHNHITGQL 186
L L +N S R + L L ++ N L L LE L++ N + L
Sbjct: 42 LDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQ-AL 100
Query: 187 PASIGNLSSLLAFDVRENILWGRIDSLVQLRNLRLLDIAFNHFSGMIPPPIF-NISSLEV 245
P + FD QL NL L + N +PP +F +++ L
Sbjct: 101 PIGV--------FD--------------QLVNLAELRLDRNQLK-SLPPRVFDSLTKLTY 137
Query: 246 ISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSL-SNASRLEMIEFSRNQFSG 304
+SL N SLP L +L++L N +P + L+ ++ NQ
Sbjct: 138 LSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQLK-RVPEGAFDKLTELKTLKLDNNQLKR 195
Query: 305 RVSVDFSRLKNLSFLNMGIN 324
F L+ L L + N
Sbjct: 196 VPEGAFDSLEKLKMLQLQEN 215
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 49.6 bits (119), Expect = 7e-07
Identities = 50/216 (23%), Positives = 81/216 (37%), Gaps = 41/216 (18%)
Query: 233 IPPPIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRL 292
IP I + + + L N+ + SLP A L LR L N N ++P +
Sbjct: 31 IPSNIP--ADTKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGI------ 80
Query: 293 EMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFN 352
F LKNL L + N L F L L L +
Sbjct: 81 -----------------FKELKNLETLWVTDNKLQALPIGV--FDQL----VNLAELRLD 117
Query: 353 RNRFQGVLPQSMANFSSTIKQIAMGRNRISGTIPPGI-RSHANLNWLTMDSNLFTGTIPP 411
RN+ + LP + + + + +++G N + ++P G+ +L L + +N
Sbjct: 118 RNQLKS-LPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQLKRVPEG 175
Query: 412 VIGELKNLQLLDLGGNFLQGSIP----SSLGNLTLL 443
+L L+ L L N L+ +P SL L +L
Sbjct: 176 AFDKLTELKTLKLDNNQLK-RVPEGAFDSLEKLKML 210
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 56.8 bits (137), Expect = 5e-09
Identities = 38/196 (19%), Positives = 74/196 (37%), Gaps = 36/196 (18%)
Query: 137 TIPTNLSRRSNLIELSVDTNYLVGEIPS--AIGSLFKLERLFIFHNHITGQLPASIGNLS 194
+P +L S L + N L + + L L L + HNH+ + +
Sbjct: 32 NVPQSLP--SYTALLDLSHNNL-SRLRAEWTPTRLTNLHSLLLSHNHLN-FISSE----- 82
Query: 195 SLLAFDVRENILWGRIDSLVQLRNLRLLDIAFNHFSGMIPPPIF-NISSLEVISLSENRF 253
AF + NLR LD++ NH + +F ++ +LEV+ L N
Sbjct: 83 ---AFV--------------PVPNLRYLDLSSNHLH-TLDEFLFSDLQALEVLLLYNNHI 124
Query: 254 TGSLPVDAGVNLPNLRQLSPNGNNFTGSIP----VSLSNASRLEMIEFSRNQFSGRVSVD 309
+ +A ++ L++L + N + P + +L +++ S N+ D
Sbjct: 125 V-VVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTD 182
Query: 310 FSRLKNLSFLNMGINN 325
+L + ++N
Sbjct: 183 LQKLPAWVKNGLYLHN 198
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 48.3 bits (115), Expect = 2e-06
Identities = 38/201 (18%), Positives = 66/201 (32%), Gaps = 40/201 (19%)
Query: 233 IPPPIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRL 292
+P + S ++ LS N + L NL L + N+ I
Sbjct: 33 VPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEA------ 83
Query: 293 EMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFN 352
F + NL +L++ N+L T +E F +L LE L
Sbjct: 84 -----------------FVPVPNLRYLDLSSNHL--HTLDEFLFSDL----QALEVLLLY 120
Query: 353 RNRFQGVLPQSMANFSSTIKQIAMGRNRISGTIPPGI----RSHANLNWLTMDSNLFTGT 408
N V + + + ++++ + +N+IS P + L L + SN
Sbjct: 121 NNHIVVVDRNAFEDMAQ-LQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLKKL 178
Query: 409 IPPVIGELKNLQL--LDLGGN 427
+ +L L L N
Sbjct: 179 PLTDLQKLPAWVKNGLYLHNN 199
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 47.9 bits (114), Expect = 3e-06
Identities = 36/169 (21%), Positives = 60/169 (35%), Gaps = 17/169 (10%)
Query: 281 SIPVSLSNASRLEMIEFSRNQFSG-RVSVDFSRLKNLSFLNMGINNLGTRTANELDFINL 339
++P SL S +++ S N S R +RL NL L + N+L ++
Sbjct: 32 NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFV---- 85
Query: 340 LANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNRISGTIPPGIRSH-ANLNWL 398
L L + N L + + + ++ + + N I + A L L
Sbjct: 86 --PVPNLRYLDLSSNHLH-TLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKL 141
Query: 399 TMDSNLFTGTIPP----VIGELKNLQLLDLGGNFLQGSIPSSLGNLTLL 443
+ N + P +L L LLDL N L+ + L L
Sbjct: 142 YLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAW 189
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 45.2 bits (107), Expect = 2e-05
Identities = 39/226 (17%), Positives = 75/226 (33%), Gaps = 65/226 (28%)
Query: 62 CQWTGVTCGRRH---------QRVTRLDLRNQSIGGPLSPYV-GNLSFLRYINLANNGFL 111
C ++C ++ LDL + ++ + + L+ L + L++N L
Sbjct: 18 CASNILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNH-L 76
Query: 112 GEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSVDTNYLVGEIPSAI-GSLF 170
I +F NL L + +N+L + + L
Sbjct: 77 NFISS---------------EAFVPV--------PNLRYLDLSSNHLH-TLDEFLFSDLQ 112
Query: 171 KLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLRLLDIAFNHFS 230
LE L +++NHI + + AF+ + L+ L ++ N S
Sbjct: 113 ALEVLLLYNNHIV-VVDRN--------AFE--------------DMAQLQKLYLSQNQIS 149
Query: 231 GMIPPPIF----NISSLEVISLSENRFTGSLPVDAGVNLPNLRQLS 272
P + + L ++ LS N+ LP+ LP +
Sbjct: 150 -RFPVELIKDGNKLPKLMLLDLSSNKLK-KLPLTDLQKLPAWVKNG 193
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 48.5 bits (116), Expect = 1e-06
Identities = 41/167 (24%), Positives = 69/167 (41%), Gaps = 28/167 (16%)
Query: 137 TIPTNLSRRSNLIELSVDTNYLVGEIPSAIGSLFKLERLFIFHNHITGQLPASIGNLSSL 196
IPTNL + E+ ++ N + P A KL R+ + +N I+ +L
Sbjct: 25 EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPD------- 74
Query: 197 LAFDVRENILWGRIDSLVQLRNLRLLDIAFNHFSGMIPPPIF-NISSLEVISLSENRFTG 255
AF LR+L L + N + +P +F + SL+++ L+ N+
Sbjct: 75 -AFQ--------------GLRSLNSLVLYGNKITE-LPKSLFEGLFSLQLLLLNANKIN- 117
Query: 256 SLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQF 302
L VDA +L NL LS N + S ++ + ++N F
Sbjct: 118 CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 45.0 bits (107), Expect = 1e-05
Identities = 31/153 (20%), Positives = 58/153 (37%), Gaps = 26/153 (16%)
Query: 127 LVLSNNSFSGTIPTNLSRRSNLIELSVDTNYLVGEIPSAIGSLFKLERLFIFHNHITGQL 186
+ L N+ P S L + + N + P A L L L ++ N IT +L
Sbjct: 37 IRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT-EL 95
Query: 187 PASIGNLSSLLAFDVRENILWGRIDSLVQLRNLRLLDIAFNHFSGMIPPPIF-NISSLEV 245
P S+ F+ L +L+LL + N + + F ++ +L +
Sbjct: 96 PKSL--------FE--------------GLFSLQLLLLNANKINC-LRVDAFQDLHNLNL 132
Query: 246 ISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNF 278
+SL +N+ ++ L ++ + N F
Sbjct: 133 LSLYDNKLQ-TIAKGTFSPLRAIQTMHLAQNPF 164
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 40.4 bits (95), Expect = 5e-04
Identities = 29/124 (23%), Positives = 50/124 (40%), Gaps = 6/124 (4%)
Query: 76 VTRLDLRNQSIGGPLSPYV-GNLSFLRYINLANNGFLGEIPPQI-GRLNMLEGLVLSNNS 133
+T + L +I + P LR I+L+NN + E+ P L L LVL N
Sbjct: 34 ITEIRLEQNTIKV-IPPGAFSPYKKLRRIDLSNN-QISELAPDAFQGLRSLNSLVLYGNK 91
Query: 134 FSGTIPTNLSRR-SNLIELSVDTNYLVGEIPSAIGSLFKLERLFIFHNHITGQLPASIGN 192
+ +P +L +L L ++ N + A L L L ++ N + +
Sbjct: 92 IT-ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSP 150
Query: 193 LSSL 196
L ++
Sbjct: 151 LRAI 154
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 49.8 bits (118), Expect = 1e-06
Identities = 35/211 (16%), Positives = 62/211 (29%), Gaps = 26/211 (12%)
Query: 90 LSPYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLI 149
L L+ + ++ L+ L N TI + L+
Sbjct: 341 WCRDSATDEQLFRCELSVE-KSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLL 399
Query: 150 ELSVDTNYL---------------------VGEIPSAIGSLFKLERLFIFHNHITGQLPA 188
Y + E + L + H +T +
Sbjct: 400 YEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLT--VLC 457
Query: 189 SIGNLSSLLAFDVRENILWGRIDSLVQLRNLRLLDIAFNHFSGMIPPPIFNISSLEVISL 248
+ L + D+ N L +L LR L +L + N + + N+ L+ + L
Sbjct: 458 HLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENV--DGVANLPRLQELLL 515
Query: 249 SENRFTGSLPVDAGVNLPNLRQLSPNGNNFT 279
NR S + V+ P L L+ GN+
Sbjct: 516 CNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC 546
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 47.1 bits (111), Expect = 7e-06
Identities = 46/322 (14%), Positives = 94/322 (29%), Gaps = 22/322 (6%)
Query: 124 LEGLVLSNNSFSGTIPTNLSRRSNLIELSVDTNYLVGEIPSAIGSLFKLERLFIFHNHIT 183
L+ ++SR + + VG + + L +
Sbjct: 232 HRWLLGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPD 291
Query: 184 GQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLRLLDIAFNHFSGMIPPPIFNISSL 243
G+ S L L A + + + + + + + L
Sbjct: 292 GRNRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQL 351
Query: 244 EVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFS 303
LS + T + L++L P +I + + L + + FS
Sbjct: 352 FRCELSVEKSTVLQSELE--SCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFS 409
Query: 304 GRVSVDFSRL------KNLSFLNMGINNLGTRTANELDFINL-------LANCSKLERLY 350
+VD R ++ L + + L + L + L
Sbjct: 410 TLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLD 469
Query: 351 FNRNRFQGVLPQSMANFSSTIKQIAMGRNRISGTIPPGIRSHANLNWLTMDSNLFTGTIP 410
+ NR + LP ++A ++ + N + + G+ + L L + +N
Sbjct: 470 LSHNRLR-ALPPALAALRC-LEVLQASDNALE-NVD-GVANLPRLQELLLCNNRLQ-QSA 524
Query: 411 PV--IGELKNLQLLDLGGNFLQ 430
+ + L LL+L GN L
Sbjct: 525 AIQPLVSCPRLVLLNLQGNSLC 546
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 42.8 bits (100), Expect = 2e-04
Identities = 27/174 (15%), Positives = 55/174 (31%), Gaps = 18/174 (10%)
Query: 283 PVSLSNASRLEMIEFSRNQFSGRVS--VDFSRLKNLSFLNMGINNLGTRTANELDF---- 336
+ +L E S + + S L+ L N LD
Sbjct: 342 CRDSATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYE 401
Query: 337 INLLANCSKLERLYFNRNRFQGVL-------PQSMANFSSTIKQIAMGRNRISGTIPPGI 389
L S L+ + R + L + + ++ + + + T+ +
Sbjct: 402 KETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDL--TVLCHL 459
Query: 390 RSHANLNWLTMDSNLFTGTIPPVIGELKNLQLLDLGGNFLQGSIPSSLGNLTLL 443
+ L + N +PP + L+ L++L N L+ ++ + NL L
Sbjct: 460 EQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVD-GVANLPRL 510
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 | Back alignment and structure |
|---|
Score = 48.9 bits (117), Expect = 1e-06
Identities = 34/235 (14%), Positives = 72/235 (30%), Gaps = 47/235 (20%)
Query: 209 RIDSLVQLRNLRLLDIAFNHFSGMIPPPIFNISSLEVISLSENRFTGSLPVDAGVNLPNL 268
++ L N ++ + + +S ++ + + + NL
Sbjct: 11 QVFPDPGLANAVKQNLGKQSVTDL--VSQKELSGVQNFNGDNSNIQSLAGMQ---FFTNL 65
Query: 269 RQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLGT 328
++L + N + + L + ++LE + +RN+ +++ LS L + N L
Sbjct: 66 KELHLSHNQIS-DLS-PLKDLTKLEELSVNRNRLK---NLNGIPSACLSRLFLDNNELRD 120
Query: 329 RTANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNRISGTIPPG 388
+ L + LE L N+ +K I
Sbjct: 121 --------TDSLIHLKNLEILSIRNNK---------------LKSI------------VM 145
Query: 389 IRSHANLNWLTMDSNLFTGTIPPVIGELKNLQLLDLGGNFLQGSIPSSLGNLTLL 443
+ + L L + N T + LK + +DL G L +
Sbjct: 146 LGFLSKLEVLDLHGNEIT-NTGG-LTRLKKVNWIDLTGQKCVNEPVKYQPELYIT 198
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 | Back alignment and structure |
|---|
Score = 46.6 bits (111), Expect = 5e-06
Identities = 34/212 (16%), Positives = 74/212 (34%), Gaps = 22/212 (10%)
Query: 124 LEGLVLSNNSFSGTIPTNLSRRSNLIELSVDTNYLVGEIPSAIGSLFKLERLFIFHNHIT 183
L S T + S + + D + + + + + L+ L + HN I+
Sbjct: 21 AVKQNLGKQSV--TDLVSQKELSGVQNFNGDNSNI--QSLAGMQFFTNLKELHLSHNQIS 76
Query: 184 GQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLRL--LDIAFNHFSGMIPPPIFNIS 241
+ + +L+ L V N R+ +L + + L L + N + ++
Sbjct: 77 D--LSPLKDLTKLEELSVNRN----RLKNLNGIPSACLSRLFLDNNELRDT--DSLIHLK 128
Query: 242 SLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQ 301
+LE++S+ N+ + L L L +GN T + L+ ++ I+ + +
Sbjct: 129 NLEILSIRNNKLKS---IVMLGFLSKLEVLDLHGNEIT-NTG-GLTRLKKVNWIDLTGQK 183
Query: 302 FSGRVSVDFSRLKNLSFLNMGINNLGTRTANE 333
+ L N + G +
Sbjct: 184 CV---NEPVKYQPELYITNTVKDPDGRWISPY 212
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251 | Back alignment and structure |
|---|
Score = 47.4 bits (113), Expect = 3e-06
Identities = 39/155 (25%), Positives = 68/155 (43%), Gaps = 16/155 (10%)
Query: 293 EMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFN 352
E ++ + F L L++LN+ N L T +A D + ++L L
Sbjct: 38 EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDL------TELGTLGLA 91
Query: 353 RNRFQGVLPQSMANFSSTIKQIAMGRNRISGTIPPGI-RSHANLNWLTMDSNLFTGTIPP 411
N+ LP + + + + ++ +G N++ ++P G+ L L +++N +IP
Sbjct: 92 NNQLA-SLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQ-SIPA 148
Query: 412 -VIGELKNLQLLDLGGNFLQGSIP----SSLGNLT 441
+L NLQ L L N LQ S+P LG L
Sbjct: 149 GAFDKLTNLQTLSLSTNQLQ-SVPHGAFDRLGKLQ 182
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 8e-05
Identities = 42/160 (26%), Positives = 68/160 (42%), Gaps = 12/160 (7%)
Query: 125 EGLVLSNNSFSGTIPTNLSRRSNLIELSVDTNYLVGEIPSAIGSLFKLERLFIFHNHITG 184
E L L + + + L L++D N L L +L L + +N +
Sbjct: 38 EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA- 96
Query: 185 QLPASI-GNLSSLLAFDVRENIL----WGRIDSLVQLRNLRLLDIAFNHFSGMIPPPIFN 239
LP + +L+ L + N L G D L +L+ LRL N IP F+
Sbjct: 97 SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNT---NQLQS-IPAGAFD 152
Query: 240 -ISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNF 278
+++L+ +SLS N+ S+P A L L+ ++ GN F
Sbjct: 153 KLTNLQTLSLSTNQLQ-SVPHGAFDRLGKLQTITLFGNQF 191
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149 | Back alignment and structure |
|---|
Score = 44.3 bits (105), Expect = 1e-05
Identities = 27/116 (23%), Positives = 43/116 (37%), Gaps = 7/116 (6%)
Query: 239 NISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFS 298
S ++ + L +R L LS T SI L ++L+ +E S
Sbjct: 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SIAN-LPKLNKLKKLELS 72
Query: 299 RNQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRN 354
N+ SG + V + NL+ LN+ N + +L I L L+ L
Sbjct: 73 DNRVSGGLEVLAEKCPNLTHLNLSGNKI-----KDLSTIEPLKKLENLKSLDLFNC 123
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149 | Back alignment and structure |
|---|
Score = 42.0 bits (99), Expect = 7e-05
Identities = 27/132 (20%), Positives = 48/132 (36%), Gaps = 26/132 (19%)
Query: 146 SNLIELSVDTN-YLVGEIPSAIGSLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVREN 204
S++ EL +D + G++ +LE L + +T SI NL L
Sbjct: 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-----SIANLPKL-------- 63
Query: 205 ILWGRIDSLVQLRNLRLLDIAFNHFSGMIPPPIFNISSLEVISLSENRFTGSLPVDAGVN 264
L+ L+++ N SG + +L ++LS N+ ++
Sbjct: 64 ------------NKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKK 111
Query: 265 LPNLRQLSPNGN 276
L NL+ L
Sbjct: 112 LENLKSLDLFNC 123
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272 | Back alignment and structure |
|---|
Score = 45.8 bits (109), Expect = 1e-05
Identities = 44/217 (20%), Positives = 70/217 (32%), Gaps = 49/217 (22%)
Query: 233 IPPPIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRL 292
P F + +L + T +N + + + I L N L
Sbjct: 13 FPDDAF--AETIKANLKKKSVT-DAVTQNELNSIDQIIANNSDIKSVQGIQ-YLPNVRYL 68
Query: 293 EMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFN 352
+ N+ +S L NL++L + N L + D + L+ L
Sbjct: 69 AL---GGNKLH-DISA-LKELTNLTYLILTGNQLQSLPNGVFD------KLTNLKELVLV 117
Query: 353 RNRFQGVLPQSMANFSSTIKQIAMGRNRISGTIPPGIRSH-ANLNWLTMDSNLFTGTIPP 411
N+ Q ++P G+ NL +L + N ++P
Sbjct: 118 ENQLQ--------------------------SLPDGVFDKLTNLTYLNLAHNQLQ-SLPK 150
Query: 412 -VIGELKNLQLLDLGGNFLQGSIPS----SLGNLTLL 443
V +L NL LDL N LQ S+P L L L
Sbjct: 151 GVFDKLTNLTELDLSYNQLQ-SLPEGVFDKLTQLKDL 186
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386 | Back alignment and structure |
|---|
Score = 46.2 bits (110), Expect = 1e-05
Identities = 47/312 (15%), Positives = 84/312 (26%), Gaps = 51/312 (16%)
Query: 71 RRHQRVTRLDLRNQSIGGP----LSPYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEG 126
V + L +IG LS + + L ++ GR+
Sbjct: 29 LEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDI--------FTGRVKDEIP 80
Query: 127 LVLSNNSFSGTIPTNLSRRSNLIELSVDTNYLVGEIPSAIGSLFK----LERLFIFHNHI 182
L + L + L + + N + LE L++ +N +
Sbjct: 81 EALR------LLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGL 134
Query: 183 TGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLRLLDIAFNHFS--GM--IPPPIF 238
P + ++ L LR + N M
Sbjct: 135 G---PQAGAKIARALQELAVNK-------KAKNAPPLRSIICGRNRLENGSMKEWAKTFQ 184
Query: 239 NISSLEVISLSENRFT----GSLPVDAGVNLPNLRQLSPNGNNFT--GSIPVS--LSNAS 290
+ L + + +N L ++ L+ L N FT GS ++ L +
Sbjct: 185 SHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWP 244
Query: 291 RLEMIEFSRNQFSGRVSVDFSRL------KNLSFLNMGINNLGTRTANELDFINLLANCS 344
L + + S R + L L + N + L + +
Sbjct: 245 NLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTV-IDEKMP 303
Query: 345 KLERLYFNRNRF 356
L L N NRF
Sbjct: 304 DLLFLELNGNRF 315
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386 | Back alignment and structure |
|---|
Score = 45.5 bits (108), Expect = 2e-05
Identities = 46/234 (19%), Positives = 82/234 (35%), Gaps = 52/234 (22%)
Query: 240 ISSLEVISLSENRFTGSLPVDAGV--------NLPNLRQLSPNGNNFTG----SIPVSLS 287
S+E SL + T +++++ +GN + +++
Sbjct: 3 RFSIEGKSLKLDAIT-----TEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIA 57
Query: 288 NASRLEMIEFSRNQFSGRVSVDF-----------SRLKNLSFLNMGINNLGTRTANELDF 336
+ LE+ EFS F+GRV + + L + + N G L
Sbjct: 58 SKKDLEIAEFSDI-FTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPL-- 114
Query: 337 INLLANCSKLERLYFNRNRF------------QGVLPQSMANFSSTIKQIAMGRNRISG- 383
I+ L+ + LE LY + N Q + A + ++ I GRNR+
Sbjct: 115 IDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENG 174
Query: 384 ---TIPPGIRSHANLNWLTMDSNLFTGT-IPPVIGEL----KNLQLLDLGGNFL 429
+SH L+ + M N I ++ E + L++LDL N
Sbjct: 175 SMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTF 228
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386 | Back alignment and structure |
|---|
Score = 43.2 bits (102), Expect = 1e-04
Identities = 42/261 (16%), Positives = 72/261 (27%), Gaps = 52/261 (19%)
Query: 215 QLRNLRLLDIAFNHFSGMIPPPIFNIS-------SLEVISLSENRFTGSLPVDAGV---- 263
L DI IP + + L + LS+N F
Sbjct: 61 DLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFG-----PTAQEPLI 115
Query: 264 ----NLPNLRQLSPNGNNFT-------------GSIPVSLSNASRLEMIEFSRNQFSGR- 305
L L + N ++ NA L I RN+
Sbjct: 116 DFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGS 175
Query: 306 ---VSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQ 362
+ F + L + M N + L + LA C +L+ L N F +
Sbjct: 176 MKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHL-LLEGLAYCQELKVLDLQDNTFTHLGSS 234
Query: 363 SMAN---FSSTIKQIAMGRNRISGT----IPPGIRSHAN--LNWLTMDSNLFTGTIPPVI 413
++A ++++ + +S + N L L + N +
Sbjct: 235 ALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTL 294
Query: 414 GE-----LKNLQLLDLGGNFL 429
+ +L L+L GN
Sbjct: 295 KTVIDEKMPDLLFLELNGNRF 315
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386 | Back alignment and structure |
|---|
Score = 41.6 bits (98), Expect = 3e-04
Identities = 41/232 (17%), Positives = 64/232 (27%), Gaps = 48/232 (20%)
Query: 241 SSLEVISLSENRFTGSLPVDAGV--------NLPNLRQLSPNGNNFTGSIPV-------- 284
S++ I LS N + +L + FTG +
Sbjct: 32 DSVKEIVLSGNTIG-----TEAARWLSENIASKKDLEIAE-FSDIFTGRVKDEIPEALRL 85
Query: 285 ---SLSNASRLEMIEFSRNQFSGRVSVDFSRL----KNLSFLNMGINNLGTRTA------ 331
+L +L + S N F L L + N LG +
Sbjct: 86 LLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARA 145
Query: 332 -NELDFINLLANCSKLERLYFNRNRFQGVLPQSMAN---FSSTIKQIAMGRNRI-----S 382
EL N L + RNR + + A + + M +N I
Sbjct: 146 LQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIE 205
Query: 383 GTIPPGIRSHANLNWLTMDSNLFTGT----IPPVIGELKNLQLLDLGGNFLQ 430
+ G+ L L + N FT + + NL+ L L L
Sbjct: 206 HLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLS 257
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198 | Back alignment and structure |
|---|
Score = 43.5 bits (103), Expect = 4e-05
Identities = 31/122 (25%), Positives = 47/122 (38%), Gaps = 11/122 (9%)
Query: 233 IPPPIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRL 292
+ + + + + ++LS N + + NLR LS N I + A L
Sbjct: 40 MDATLSTLKACKHLALSTNNIEKISSLS---GMENLRILSLGRNLIK-KIENLDAVADTL 95
Query: 293 EMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFN 352
E + S NQ + +S +L NL L M N + I+ LA KLE L
Sbjct: 96 EELWISYNQIA-SLS-GIEKLVNLRVLYMSNNKI-----TNWGEIDKLAALDKLEDLLLA 148
Query: 353 RN 354
N
Sbjct: 149 GN 150
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 44.0 bits (103), Expect = 7e-05
Identities = 20/128 (15%), Positives = 38/128 (29%), Gaps = 25/128 (19%)
Query: 128 VLSNNSFSGTIPTNLSRRSNLIELSVDTNYLVGEIPS-AIGSLFKLERLFIFHNHITGQL 186
+ + +L NL EL ++ + + + L +L L I + + +
Sbjct: 13 LRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FV 71
Query: 187 PASIGNLSSLLAFDVRENILWGRIDSLVQLRNLRLLDIAFNHFSGMIPPPIFNISSLEVI 246
AF L L+++FN + SL+ +
Sbjct: 72 APD--------AFH--------------FTPRLSRLNLSFNALE-SLSWKTVQGLSLQEL 108
Query: 247 SLSENRFT 254
LS N
Sbjct: 109 VLSGNPLH 116
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168 | Back alignment and structure |
|---|
Score = 42.0 bits (99), Expect = 9e-05
Identities = 22/116 (18%), Positives = 42/116 (36%), Gaps = 7/116 (6%)
Query: 239 NISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFS 298
+++ + L + NL LS S+ +L +L+ +E S
Sbjct: 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SVS-NLPKLPKLKKLELS 79
Query: 299 RNQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRN 354
N+ G + + +L NL+ LN+ N L ++ + L L+ L
Sbjct: 80 ENRIFGGLDMLAEKLPNLTHLNLSGNKL-----KDISTLEPLKKLECLKSLDLFNC 130
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168 | Back alignment and structure |
|---|
Score = 39.3 bits (92), Expect = 6e-04
Identities = 30/145 (20%), Positives = 51/145 (35%), Gaps = 21/145 (14%)
Query: 287 SNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKL 346
S +S ++M + R + ++ L N N + L A L
Sbjct: 3 SGSSGMDMKRRIHLELRNR---TPAAVRELVLDNCKSN--------DGKIEGLTAEFVNL 51
Query: 347 ERLYFNRNRFQGVLPQSMANFSS--TIKQIAMGRNRISGTIPPGIRSHANLNWLTMDSNL 404
E L S++N +K++ + NRI G + NL L + N
Sbjct: 52 EFLSLINVGLI-----SVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNK 106
Query: 405 FT--GTIPPVIGELKNLQLLDLGGN 427
T+ P + +L+ L+ LDL
Sbjct: 107 LKDISTLEP-LKKLECLKSLDLFNC 130
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220 | Back alignment and structure |
|---|
Score = 41.9 bits (99), Expect = 2e-04
Identities = 29/147 (19%), Positives = 56/147 (38%), Gaps = 14/147 (9%)
Query: 62 CQWTGVTC-GRRHQRV--------TRLDLRNQSIGG-PLSPYVGNLSFLRYINLANNGFL 111
C+ T V C ++ ++ L L N + L LR IN +NN +
Sbjct: 11 CEGTTVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNK-I 69
Query: 112 GEIPPQI-GRLNMLEGLVLSNNSFSGTIPTNLSRR-SNLIELSVDTNYLVGEIPSAIGSL 169
+I + + ++L++N + + + +L L + +N + + L
Sbjct: 70 TDIEEGAFEGASGVNEILLTSNRLE-NVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGL 128
Query: 170 FKLERLFIFHNHITGQLPASIGNLSSL 196
+ L ++ N IT P + L SL
Sbjct: 129 SSVRLLSLYDNQITTVAPGAFDTLHSL 155
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220 | Back alignment and structure |
|---|
Score = 41.2 bits (97), Expect = 2e-04
Identities = 32/128 (25%), Positives = 49/128 (38%), Gaps = 10/128 (7%)
Query: 233 IPPPIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPV-SLSNASR 291
IP I + L+ N FT LP LR+++ + N T I + AS
Sbjct: 26 IPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGASG 82
Query: 292 LEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYF 351
+ I + N+ F L++L L + N + T N+ FI L S + L
Sbjct: 83 VNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRI-TCVGNDS-FIGL----SSVRLLSL 136
Query: 352 NRNRFQGV 359
N+ V
Sbjct: 137 YDNQITTV 144
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220 | Back alignment and structure |
|---|
Score = 40.8 bits (96), Expect = 4e-04
Identities = 21/103 (20%), Positives = 41/103 (39%), Gaps = 9/103 (8%)
Query: 347 ERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNRISGTIPPGIRSHA-NLNWLTMDSNLF 405
L N N F + + +++I N+I+ I G A +N + + SN
Sbjct: 35 AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGASGVNEILLTSNRL 93
Query: 406 TGTIPP-VIGELKNLQLLDLGGNFLQGSIPS----SLGNLTLL 443
+ + L++L+ L L N + + + L ++ LL
Sbjct: 94 E-NVQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLL 134
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 2e-04
Identities = 66/411 (16%), Positives = 132/411 (32%), Gaps = 83/411 (20%)
Query: 74 QRVTRLDLRNQSIG----GPLSPYVGNLSFLRYINLANNGF----LGEIPPQIGRLNM-L 124
Q+ + L + + +S + L +NL +N + + + + +
Sbjct: 28 QQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKI 87
Query: 125 EGLVLSNNSFSGT----IPTNLSRRSNLIELSVDTNYLVGEIPSAIGSLF-----KLERL 175
+ L L N +G + + L L EL + N L + +LE+L
Sbjct: 88 QKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKL 147
Query: 176 FIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLRLLDIAFNHFSGMIPP 235
+ + ++ AS L+S+L + + L ++ N +
Sbjct: 148 QLEYCSLS---AASCEPLASVLR----------------AKPDFKELTVSNNDINEAGVR 188
Query: 236 PI-----FNISSLEVISLSENRFTGSLPVDAGV--------NLPNLRQLSPNGNNFTGSI 282
+ + LE + L T + +LR+L+ N
Sbjct: 189 VLCQGLKDSPCQLEALKLESCGVT-----SDNCRDLCGIVASKASLRELALGSNKLGDVG 243
Query: 283 PVSLSNA-----SRLEMIEFSRNQFSGRVSVDFSRL----KNLSFLNMGINNLGTRTANE 333
L SRL + + + D R+ ++L L++ N LG A
Sbjct: 244 MAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARL 303
Query: 334 LDFINLLANCSKLERLYFNRNRFQGVLPQSMAN---FSSTIKQIAMGRNRISGTIPPGIR 390
L LL +LE L+ F ++ + + ++ + NR+ G+R
Sbjct: 304 L-CETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDA---GVR 359
Query: 391 --------SHANLNWLTMDSNLFT----GTIPPVIGELKNLQLLDLGGNFL 429
+ L L + + ++ + +L+ LDL N L
Sbjct: 360 ELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCL 410
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
Score = 40.7 bits (96), Expect = 7e-04
Identities = 55/355 (15%), Positives = 111/355 (31%), Gaps = 68/355 (19%)
Query: 121 LNMLEGLVLSNNSFSGT----IPTNLSRRSNLIELSVDTNYLVGEIPSAIGSLFK----- 171
L + + L + + I + L L EL++ +N L + +
Sbjct: 27 LQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCK 86
Query: 172 LERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLRLLDIAFNHFSG 231
+++L + + +T A G LSS L L L+ L ++ N
Sbjct: 87 IQKLSLQNCCLT---GAGCGVLSSTLR----------------TLPTLQELHLSDNLLGD 127
Query: 232 MIPPPIFNI-----SSLEVISLSENRFTGSLPVDAGV--------NLPNLRQLSPNGNNF 278
+ LE + L + A P+ ++L+ + N+
Sbjct: 128 AGLQLLCEGLLDPQCRLEKLQLEYCSLS-----AASCEPLASVLRAKPDFKELTVSNNDI 182
Query: 279 TGSIPVSLS-----NASRLEMIEFSRNQFSGRVSVDFSRL----KNLSFLNMGINNLGTR 329
+ L + +LE ++ + D + +L L +G N LG
Sbjct: 183 NEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV 242
Query: 330 TANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANF---SSTIKQIAMGRNRISGT-- 384
EL L + L L+ + ++K++++ N +
Sbjct: 243 GMAELCPGLLHPSSR-LRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGA 301
Query: 385 --IPPGIRS-HANLNWLTMDSNLFTGT----IPPVIGELKNLQLLDLGGNFLQGS 432
+ + L L + S FT V+ + + L L + N L+ +
Sbjct: 302 RLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDA 356
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176 | Back alignment and structure |
|---|
Score = 40.8 bits (96), Expect = 3e-04
Identities = 24/116 (20%), Positives = 41/116 (35%), Gaps = 10/116 (8%)
Query: 168 SLFKLERLFIFHNHITGQLPASIGNLSSLL----AFDVRENILWGRIDSLVQLRNLRLLD 223
+ + L + I I NL + L A D +N + ++D LR L+ L
Sbjct: 17 NAVRDRELDLRGYKIP-----VIENLGATLDQFDAIDFSDNEI-RKLDGFPLLRRLKTLL 70
Query: 224 IAFNHFSGMIPPPIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFT 279
+ N + + L + L+ N +D +L +L L N T
Sbjct: 71 VNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT 126
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176 | Back alignment and structure |
|---|
Score = 40.4 bits (95), Expect = 3e-04
Identities = 21/116 (18%), Positives = 39/116 (33%), Gaps = 9/116 (7%)
Query: 239 NISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFS 298
N + L + + + G L + + N + RL+ + +
Sbjct: 17 NAVRDRELDLRGYKIP--VIENLGATLDQFDAIDFSDNEIR-KLD-GFPLLRRLKTLLVN 72
Query: 299 RNQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRN 354
N+ L +L+ L + N+L EL ++ LA+ L L RN
Sbjct: 73 NNRICRIGEGLDQALPDLTELILTNNSL-----VELGDLDPLASLKSLTYLCILRN 123
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208 | Back alignment and structure |
|---|
Score = 40.0 bits (94), Expect = 5e-04
Identities = 26/103 (25%), Positives = 49/103 (47%), Gaps = 10/103 (9%)
Query: 347 ERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNRISGTIPPGIRSH-ANLNWLTMDSNLF 405
L N + LP + + +++ Q+ +G N++ ++P G+ + +L +L + +N
Sbjct: 31 TYLDLETNSLKS-LPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQL 88
Query: 406 TGTIPP-VIGELKNLQLLDLGGNFLQGSIPS----SLGNLTLL 443
++P V +L L+ L L N LQ S+P L L L
Sbjct: 89 Q-SLPNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKLTQLKDL 129
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229 | Back alignment and structure |
|---|
Score = 40.1 bits (94), Expect = 6e-04
Identities = 36/154 (23%), Positives = 49/154 (31%), Gaps = 39/154 (25%)
Query: 293 EMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFN 352
+++ NQ + F L NL L +G N LG D L L L
Sbjct: 43 QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFD---SLTQ---LTVLDLG 96
Query: 353 RNRFQGVLPQSMANFSSTIKQIAMGRNRISGTIPPGIRSH-ANLNWLTMDSNLFTGTIPP 411
N+ +P + +L L M N T +P
Sbjct: 97 TNQLT--------------------------VLPSAVFDRLVHLKELFMCCNKLT-ELPR 129
Query: 412 VIGELKNLQLLDLGGNFLQGSIPS----SLGNLT 441
I L +L L L N L+ SIP L +LT
Sbjct: 130 GIERLTHLTHLALDQNQLK-SIPHGAFDRLSSLT 162
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192 | Back alignment and structure |
|---|
Score = 39.2 bits (92), Expect = 8e-04
Identities = 20/103 (19%), Positives = 38/103 (36%), Gaps = 9/103 (8%)
Query: 347 ERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNRISGTIPPGIRSHA-NLNWLTMDSNLF 405
L N N + + + ++ + RN+++ I P A ++ L + N
Sbjct: 32 TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT-GIEPNAFEGASHIQELQLGENKI 90
Query: 406 TGTIPP-VIGELKNLQLLDLGGNFLQGSIPS----SLGNLTLL 443
I + L L+ L+L N + + L +LT L
Sbjct: 91 K-EISNKMFLGLHQLKTLNLYDNQIS-CVMPGSFEHLNSLTSL 131
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 443 | |||
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 100.0 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 100.0 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 100.0 | |
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 100.0 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 100.0 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 100.0 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 100.0 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 100.0 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 100.0 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 100.0 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 100.0 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 100.0 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 100.0 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 100.0 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 100.0 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 100.0 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 100.0 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 100.0 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 100.0 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 100.0 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 100.0 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 100.0 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 100.0 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 100.0 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 100.0 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 100.0 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 100.0 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 100.0 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 100.0 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 100.0 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 100.0 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 100.0 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 100.0 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 100.0 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 100.0 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 100.0 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 100.0 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 100.0 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 100.0 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 100.0 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 100.0 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 100.0 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 100.0 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 100.0 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 100.0 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 100.0 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 100.0 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 100.0 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 100.0 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.97 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.97 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.97 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.97 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 99.96 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.96 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 99.96 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 99.96 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 99.96 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.96 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.96 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 99.96 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.96 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.95 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.95 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 99.95 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.95 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.95 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 99.95 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.94 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 99.94 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.94 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 99.94 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.93 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 99.92 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.92 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 99.92 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 99.92 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 99.91 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 99.91 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 99.91 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 99.91 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 99.91 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.91 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.91 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 99.91 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 99.9 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 99.9 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 99.9 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 99.89 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 99.88 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 99.88 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 99.88 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.87 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.87 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 99.86 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 99.86 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 99.85 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 99.85 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 99.84 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 99.84 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 99.8 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 99.8 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 99.79 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 99.79 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 99.79 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 99.78 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 99.78 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 99.78 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 99.78 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 99.78 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 99.77 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.77 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 99.76 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 99.76 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 99.76 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 99.76 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.74 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 99.74 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 99.73 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 99.71 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 99.7 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.69 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 99.68 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 99.67 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 99.66 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.66 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.65 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.64 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 99.59 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 99.58 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 99.57 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 99.57 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 99.57 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 99.57 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 99.55 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 99.54 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 99.53 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 99.52 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 99.5 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 99.48 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 99.4 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 99.4 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 99.39 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 99.38 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 99.38 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 99.35 | |
| 4gt6_A | 394 | Cell surface protein; leucine rich repeats, putati | 99.32 | |
| 4gt6_A | 394 | Cell surface protein; leucine rich repeats, putati | 99.25 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 99.13 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 99.12 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 99.12 | |
| 4h09_A | 379 | Hypothetical leucine rich repeat protein; two LRR_ | 99.0 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 98.99 | |
| 4h09_A | 379 | Hypothetical leucine rich repeat protein; two LRR_ | 98.96 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 98.86 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 98.7 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 98.64 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 98.34 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 98.14 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 98.06 | |
| 1pgv_A | 197 | TMD-1, tropomodulin TMD-1; structural genomics, PS | 98.02 | |
| 1pgv_A | 197 | TMD-1, tropomodulin TMD-1; structural genomics, PS | 97.83 | |
| 3rfe_A | 130 | Platelet glycoprotein IB beta chain; platelet surf | 96.47 | |
| 3rfe_A | 130 | Platelet glycoprotein IB beta chain; platelet surf | 96.44 |
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-55 Score=457.47 Aligned_cols=403 Identities=29% Similarity=0.392 Sum_probs=284.9
Q ss_pred CCCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCCccceeeCCCCCcEEEEEcCCCCCccc---cc-------------
Q 040495 28 ANSNETDRLALLAIKLQLHDPLGVTSSWNNSMSLCQWTGVTCGRRHQRVTRLDLRNQSIGGP---LS------------- 91 (443)
Q Consensus 28 ~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~c~w~gv~c~~~~~~v~~L~l~~~~~~~~---~~------------- 91 (443)
..+.++|++||++||+++.||. .+++|..+.+||.|.||+|+ .++|+.|+++++.+.|. ++
T Consensus 7 ~~~~~~~~~all~~k~~~~~~~-~l~~W~~~~~~C~w~gv~C~--~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~ 83 (768)
T 3rgz_A 7 SQSLYREIHQLISFKDVLPDKN-LLPDWSSNKNPCTFDGVTCR--DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLF 83 (768)
T ss_dssp -CCHHHHHHHHHHHHTTCSCTT-SSTTCCTTSCGGGSTTEEEE--TTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEE
T ss_pred ccCCHHHHHHHHHHHhhCCCcc-cccCCCCCCCCcCCcceEEC--CCcEEEEECCCCCcCCccCccChhHhccCcccccC
Confidence 3446789999999999999988 88999988899999999998 38999999999998886 44
Q ss_pred ----------ccccCCCCCCEEeCCCCcCCCCCch--hhcCCCccCeEEccCCCCCCCCChhh-hcCCCCceeeccCCcc
Q 040495 92 ----------PYVGNLSFLRYINLANNGFLGEIPP--QIGRLNMLEGLVLSNNSFSGTIPTNL-SRRSNLIELSVDTNYL 158 (443)
Q Consensus 92 ----------~~~~~l~~L~~L~L~~n~~~~~~~~--~l~~l~~L~~L~l~~n~~~~~~p~~l-~~l~~L~~L~l~~n~l 158 (443)
..+..+++|++|+|++|.+.+.+|. .++++++|++|++++|.+.+..|..+ .++++|++|++++|.+
T Consensus 84 ~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l 163 (768)
T 3rgz_A 84 LSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSI 163 (768)
T ss_dssp CTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCC
T ss_pred CcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCcc
Confidence 3566777788888888887777777 77788888888888887777776655 6777777777777777
Q ss_pred cccCCcc---ccCCcCccEeeeeccccCccCCccccCCCCCCEEEccCCcCCcccccccCCCCCCEEEcccccCCCCCCc
Q 040495 159 VGEIPSA---IGSLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLRLLDIAFNHFSGMIPP 235 (443)
Q Consensus 159 ~~~~p~~---l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~~~~~~~~ 235 (443)
++..|.. +.++++|++|++++|.+++..|. ..+++|++|++++|.+.+..+.++.+++|++|++++|.+++.+|.
T Consensus 164 ~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~ 241 (768)
T 3rgz_A 164 SGANVVGWVLSDGCGELKHLAISGNKISGDVDV--SRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSR 241 (768)
T ss_dssp EEETHHHHHHTTCCTTCCEEECCSSEEESCCBC--TTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHHH
T ss_pred CCcCChhhhhhccCCCCCEEECCCCcccccCCc--ccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCcccH
Confidence 7666655 56667777777777766654443 567777777777777766665577777777777777777777777
Q ss_pred cccCCCCCcEEEcccCcCcccCChhhhcCCCCCcEEeCCCCcCCccCCccCcCC-CCCCEEecccCcCccccchhhhCCC
Q 040495 236 PIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNA-SRLEMIEFSRNQFSGRVSVDFSRLK 314 (443)
Q Consensus 236 ~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~-~~L~~L~l~~n~l~~~~~~~~~~l~ 314 (443)
.+..+++|++|++++|.+++.+|.. .+++|++|++++|++++.+|..+... ++|++|++++|++++..|..++.++
T Consensus 242 ~l~~l~~L~~L~Ls~n~l~~~~~~~---~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~ 318 (768)
T 3rgz_A 242 AISTCTELKLLNISSNQFVGPIPPL---PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCS 318 (768)
T ss_dssp HTTTCSSCCEEECCSSCCEESCCCC---CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCT
T ss_pred HHhcCCCCCEEECCCCcccCccCcc---ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCC
Confidence 7777777777777777776655543 45666666666666666666665553 6677777777766666666666666
Q ss_pred CCCEEEccCCCCcccCCCchhhHhhhcCCCCCCEEEccCCcCcccCChhHhhhc--------------------------
Q 040495 315 NLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFS-------------------------- 368 (443)
Q Consensus 315 ~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~-------------------------- 368 (443)
+|++|++++|.+++..+. ..+..+++|++|++++|++++.+|..+..+.
T Consensus 319 ~L~~L~L~~n~l~~~ip~-----~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~ 393 (768)
T 3rgz_A 319 LLESLALSSNNFSGELPM-----DTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPK 393 (768)
T ss_dssp TCCEEECCSSEEEEECCH-----HHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTT
T ss_pred CccEEECCCCcccCcCCH-----HHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhccc
Confidence 677777766666655551 2255666666666666666666665555432
Q ss_pred cCCCEEeccCCcCeecCchhhhcCCCCCeEeCcCCcCcccCchhhcCCCCCCEEEccCCcCcccCCccccCCCCC
Q 040495 369 STIKQIAMGRNRISGTIPPGIRSHANLNWLTMDSNLFTGTIPPVIGELKNLQLLDLGGNFLQGSIPSSLGNLTLL 443 (443)
Q Consensus 369 ~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L 443 (443)
++|+.|++++|++++.+|..+..+++|++|++++|.+++.+|..+..+++|++|++++|+++|.+|..+.++++|
T Consensus 394 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L 468 (768)
T 3rgz_A 394 NTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTL 468 (768)
T ss_dssp CCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTC
T ss_pred CCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCc
Confidence 345555555555665666666666667777777777666666666667777777777777776777666655543
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-53 Score=431.70 Aligned_cols=391 Identities=22% Similarity=0.290 Sum_probs=281.4
Q ss_pred CCHHHHHHHHHHHHhCCCCCCC--------CCCCCCCCCCCCc---cceeeCCCCCcEEEEEcCCCCCcccccccccCCC
Q 040495 30 SNETDRLALLAIKLQLHDPLGV--------TSSWNNSMSLCQW---TGVTCGRRHQRVTRLDLRNQSIGGPLSPYVGNLS 98 (443)
Q Consensus 30 ~~~~~~~~l~~~~~~~~~~~~~--------~~~w~~~~~~c~w---~gv~c~~~~~~v~~L~l~~~~~~~~~~~~~~~l~ 98 (443)
....|+.||.+++.++.++... ..+|+...++|.| .||+|+.. ++|+.|+|+++++.|.+|+.+++++
T Consensus 27 ~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~~~~c~w~~~~GV~C~~~-~~V~~L~L~~~~l~g~lp~~l~~L~ 105 (636)
T 4eco_A 27 EYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELDMWGAQPGVSLNSN-GRVTGLSLEGFGASGRVPDAIGQLT 105 (636)
T ss_dssp HHHHHHHHHHHHHHHTTGGGCCCCC------CCCCCSSCGGGTTCCTTEEECTT-CCEEEEECTTSCCEEEECGGGGGCT
T ss_pred hHHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCCCCCcccccCCCCeEEcCC-CCEEEEEecCcccCCcCChHHhcCc
Confidence 3457999999999998755322 2379988899999 99999876 8999999999999999999999999
Q ss_pred CCCEEeCCCCcC--------------------------------------------------------------------
Q 040495 99 FLRYINLANNGF-------------------------------------------------------------------- 110 (443)
Q Consensus 99 ~L~~L~L~~n~~-------------------------------------------------------------------- 110 (443)
+|++|+|++|.+
T Consensus 106 ~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~ 185 (636)
T 4eco_A 106 ELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKD 185 (636)
T ss_dssp TCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCCCT
T ss_pred cceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCccccccccccccchhh
Confidence 999999998843
Q ss_pred ----------CCCCchhhcCCCccCeEEccCCCCCCC-----------------CChhhh--cCCCCceeeccCCccccc
Q 040495 111 ----------LGEIPPQIGRLNMLEGLVLSNNSFSGT-----------------IPTNLS--RRSNLIELSVDTNYLVGE 161 (443)
Q Consensus 111 ----------~~~~~~~l~~l~~L~~L~l~~n~~~~~-----------------~p~~l~--~l~~L~~L~l~~n~l~~~ 161 (443)
++ +|..++++++|++|++++|.+++. +|..++ ++++|++|++++|.+.+.
T Consensus 186 l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~ 264 (636)
T 4eco_A 186 TQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTK 264 (636)
T ss_dssp TTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSS
T ss_pred hhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCcc
Confidence 34 788899999999999999999985 899988 999999999999999999
Q ss_pred CCccccCCcCccEeeeeccc-cCc-cCCccccCC------CCCCEEEccCCcCCcccc--cccCCCCCCEEEcccccCCC
Q 040495 162 IPSAIGSLFKLERLFIFHNH-ITG-QLPASIGNL------SSLLAFDVRENILWGRID--SLVQLRNLRLLDIAFNHFSG 231 (443)
Q Consensus 162 ~p~~l~~l~~L~~L~l~~n~-l~~-~~~~~l~~l------~~L~~L~l~~n~l~~~~~--~l~~l~~L~~L~l~~n~~~~ 231 (443)
+|..++++++|++|++++|. +++ .+|..++++ ++|++|++++|.++..+. .++.+++|++|++++|.+.|
T Consensus 265 ~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g 344 (636)
T 4eco_A 265 LPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEG 344 (636)
T ss_dssp CCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEE
T ss_pred ChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCcc
Confidence 99999999999999999998 888 788887776 899999999998885555 78888889999998888887
Q ss_pred CCCccccCCCCCcEEEcccCcCcccCChhhhcCCCC-CcEEeCCCCcCCccCCccCcCCC--CCCEEecccCcCccccch
Q 040495 232 MIPPPIFNISSLEVISLSENRFTGSLPVDAGVNLPN-LRQLSPNGNNFTGSIPVSLSNAS--RLEMIEFSRNQFSGRVSV 308 (443)
Q Consensus 232 ~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~-L~~L~L~~n~l~~~~~~~l~~~~--~L~~L~l~~n~l~~~~~~ 308 (443)
.+| .+..+++|++|++++|.++ .+|..+. .+++ |++|++++|.++ .+|..+...+ +|++|++++|++++..|.
T Consensus 345 ~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~-~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~ 420 (636)
T 4eco_A 345 KLP-AFGSEIKLASLNLAYNQIT-EIPANFC-GFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGK 420 (636)
T ss_dssp ECC-CCEEEEEESEEECCSSEEE-ECCTTSE-EECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTC
T ss_pred chh-hhCCCCCCCEEECCCCccc-cccHhhh-hhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchh
Confidence 777 6666666777777776666 6665544 4555 666666666665 5555554433 555555555555555554
Q ss_pred hhh-------CCCCCCEEEccCCCCcccCCCchhhHhhhcCCC-------------------------------CCCEEE
Q 040495 309 DFS-------RLKNLSFLNMGINNLGTRTANELDFINLLANCS-------------------------------KLERLY 350 (443)
Q Consensus 309 ~~~-------~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~-------------------------------~L~~L~ 350 (443)
.+. .+++|++|++++|.++...+ ..+..++ +|++|+
T Consensus 421 ~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~------~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~ 494 (636)
T 4eco_A 421 NFDPLDPTPFKGINVSSINLSNNQISKFPK------ELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSID 494 (636)
T ss_dssp SSCTTCSSCCCCCCEEEEECCSSCCCSCCT------HHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEE
T ss_pred hhcccccccccCCCCCEEECcCCccCcCCH------HHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEE
Confidence 444 44455555555555553322 2233334 555555
Q ss_pred ccCCcCcccCChhHh--hhccCCCEEeccCCcCeecCchhhhcCCCCCeEeC------cCCcCcccCchhhcCCCCCCEE
Q 040495 351 FNRNRFQGVLPQSMA--NFSSTIKQIAMGRNRISGTIPPGIRSHANLNWLTM------DSNLFTGTIPPVIGELKNLQLL 422 (443)
Q Consensus 351 l~~n~l~~~~p~~~~--~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L------~~n~~~~~~p~~~~~l~~L~~L 422 (443)
+++|+++ .+|..+. . .++|+.|++++|++++ +|..+..+++|+.|++ ++|.+.+.+|..+..+++|++|
T Consensus 495 Ls~N~l~-~lp~~~~~~~-l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L 571 (636)
T 4eco_A 495 LRFNKLT-KLSDDFRATT-LPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQL 571 (636)
T ss_dssp CCSSCCC-BCCGGGSTTT-CTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEE
T ss_pred CcCCcCC-ccChhhhhcc-CCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEE
Confidence 5555555 4554443 3 2455555555555554 5555555555555555 3344555555555555555555
Q ss_pred EccCCcCcccCCcc
Q 040495 423 DLGGNFLQGSIPSS 436 (443)
Q Consensus 423 ~l~~n~l~~~~p~~ 436 (443)
++++|++ +.+|..
T Consensus 572 ~Ls~N~l-~~ip~~ 584 (636)
T 4eco_A 572 QIGSNDI-RKVNEK 584 (636)
T ss_dssp ECCSSCC-CBCCSC
T ss_pred ECCCCcC-CccCHh
Confidence 5555555 455544
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-50 Score=423.11 Aligned_cols=395 Identities=21% Similarity=0.259 Sum_probs=294.2
Q ss_pred CCCCHHHHHHHHHHHHhCCCCCCCCCCCCCCC-----CC--CCc------------cceeeCCCCCcEEEEEcCCCCCcc
Q 040495 28 ANSNETDRLALLAIKLQLHDPLGVTSSWNNSM-----SL--CQW------------TGVTCGRRHQRVTRLDLRNQSIGG 88 (443)
Q Consensus 28 ~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~-----~~--c~w------------~gv~c~~~~~~v~~L~l~~~~~~~ 88 (443)
+.+..+|+.||++||.++.+| +|+.+. ++ |.| .||.|+.. ++|+.|+|+++++.|
T Consensus 264 ~~~~~~d~~ALl~~k~~l~~~-----~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~~-~~V~~L~Ls~~~L~G 337 (876)
T 4ecn_A 264 TAEYIKDYKALKAIWEALDGK-----NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNN-GRVTGLSLAGFGAKG 337 (876)
T ss_dssp CCHHHHHHHHHHHHHHHTTGG-----GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECTT-SCEEEEECTTTCCEE
T ss_pred cccchHHHHHHHHHHHHcCCC-----CCCcCCCcccccCCccccccccccccccCcCceEecCC-CCEEEEECccCCCCC
Confidence 345668999999999999877 575443 55 999 99999874 899999999999999
Q ss_pred cccccccCCCCCCEEeC-CCCcCCCC------------------------------------------------------
Q 040495 89 PLSPYVGNLSFLRYINL-ANNGFLGE------------------------------------------------------ 113 (443)
Q Consensus 89 ~~~~~~~~l~~L~~L~L-~~n~~~~~------------------------------------------------------ 113 (443)
.+|+.++++++|++|+| ++|.+.|.
T Consensus 338 ~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~i 417 (876)
T 4ecn_A 338 RVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPI 417 (876)
T ss_dssp EECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCCC
T ss_pred cCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCcccccc
Confidence 99999999999999999 77754333
Q ss_pred ----------------------CchhhcCCCccCeEEccCCCCCC-----------------CCChhhh--cCCCCceee
Q 040495 114 ----------------------IPPQIGRLNMLEGLVLSNNSFSG-----------------TIPTNLS--RRSNLIELS 152 (443)
Q Consensus 114 ----------------------~~~~l~~l~~L~~L~l~~n~~~~-----------------~~p~~l~--~l~~L~~L~ 152 (443)
+|..++++++|++|++++|.+++ .+|..++ ++++|++|+
T Consensus 418 ~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~ 497 (876)
T 4ecn_A 418 KKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVE 497 (876)
T ss_dssp CCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEE
T ss_pred ccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEE
Confidence 78889999999999999999998 3888877 999999999
Q ss_pred ccCCcccccCCccccCCcCccEeeeeccc-cCc-cCCccccCCC-------CCCEEEccCCcCCcccc--cccCCCCCCE
Q 040495 153 VDTNYLVGEIPSAIGSLFKLERLFIFHNH-ITG-QLPASIGNLS-------SLLAFDVRENILWGRID--SLVQLRNLRL 221 (443)
Q Consensus 153 l~~n~l~~~~p~~l~~l~~L~~L~l~~n~-l~~-~~~~~l~~l~-------~L~~L~l~~n~l~~~~~--~l~~l~~L~~ 221 (443)
+++|.+.+.+|..++++++|++|++++|+ +++ .+|..+++++ +|++|++++|.+...+. .+..+++|+.
T Consensus 498 Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~ 577 (876)
T 4ecn_A 498 LYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGL 577 (876)
T ss_dssp EESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCE
T ss_pred CcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCE
Confidence 99999999999999999999999999998 887 7777666554 88888888888885445 6888888888
Q ss_pred EEcccccCCCCCCccccCCCCCcEEEcccCcCcccCChhhhcCCCC-CcEEeCCCCcCCccCCccCcCCCC--CCEEecc
Q 040495 222 LDIAFNHFSGMIPPPIFNISSLEVISLSENRFTGSLPVDAGVNLPN-LRQLSPNGNNFTGSIPVSLSNASR--LEMIEFS 298 (443)
Q Consensus 222 L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~-L~~L~L~~n~l~~~~~~~l~~~~~--L~~L~l~ 298 (443)
|++++|.+. .+| .+..+++|++|++++|.++ .+|..+. .+++ |++|++++|.++ .+|..+...+. |+.|+++
T Consensus 578 L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~-~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls 652 (876)
T 4ecn_A 578 LDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFC-AFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFS 652 (876)
T ss_dssp EECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSC-EECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECC
T ss_pred EECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHh-hccccCCEEECcCCCCC-cCchhhhccccCCCCEEECc
Confidence 888888887 666 7778888888888888887 7776655 5666 777777777776 56655554432 5555555
Q ss_pred cCcCccccc----------------------------hh-hhCCCCCCEEEccCCCCcccCCCchhhH-hhhcCCCCCCE
Q 040495 299 RNQFSGRVS----------------------------VD-FSRLKNLSFLNMGINNLGTRTANELDFI-NLLANCSKLER 348 (443)
Q Consensus 299 ~n~l~~~~~----------------------------~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~-~~~~~~~~L~~ 348 (443)
+|++.+.+| .. +..+++|+.|++++|.++.......... ..+.++++|++
T Consensus 653 ~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~ 732 (876)
T 4ecn_A 653 YNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTT 732 (876)
T ss_dssp SSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCE
T ss_pred CCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccE
Confidence 555544332 22 2355666666666666663322110000 00122336777
Q ss_pred EEccCCcCcccCChhHh--hhccCCCEEeccCCcCeecCchhhhcCCCCCeEeCcC------CcCcccCchhhcCCCCCC
Q 040495 349 LYFNRNRFQGVLPQSMA--NFSSTIKQIAMGRNRISGTIPPGIRSHANLNWLTMDS------NLFTGTIPPVIGELKNLQ 420 (443)
Q Consensus 349 L~l~~n~l~~~~p~~~~--~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~------n~~~~~~p~~~~~l~~L~ 420 (443)
|++++|+++ .+|..+. . .++|+.|+|++|++++ +|..+..+++|+.|+|++ |.+.+.+|..+..+++|+
T Consensus 733 L~Ls~N~L~-~lp~~l~~~~-l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~ 809 (876)
T 4ecn_A 733 IDLRFNKLT-SLSDDFRATT-LPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLI 809 (876)
T ss_dssp EECCSSCCC-CCCGGGSTTT-CTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCC
T ss_pred EECCCCCCc-cchHHhhhcc-CCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCC
Confidence 777777777 6666665 4 3677777777777775 677777777777777755 666677777777777777
Q ss_pred EEEccCCcCcccCCccc
Q 040495 421 LLDLGGNFLQGSIPSSL 437 (443)
Q Consensus 421 ~L~l~~n~l~~~~p~~~ 437 (443)
+|+|++|++ +.+|..+
T Consensus 810 ~L~Ls~N~L-~~Ip~~l 825 (876)
T 4ecn_A 810 QLQIGSNDI-RKVDEKL 825 (876)
T ss_dssp EEECCSSCC-CBCCSCC
T ss_pred EEECCCCCC-CccCHhh
Confidence 777777777 5777654
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-49 Score=415.89 Aligned_cols=360 Identities=30% Similarity=0.498 Sum_probs=280.5
Q ss_pred cEEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCCCCCchh-hcCCCccCeEEccCCCCCCCCChhhhcCC-CCceee
Q 040495 75 RVTRLDLRNQSIGGPLSPYVGNLSFLRYINLANNGFLGEIPPQ-IGRLNMLEGLVLSNNSFSGTIPTNLSRRS-NLIELS 152 (443)
Q Consensus 75 ~v~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~-l~~l~~L~~L~l~~n~~~~~~p~~l~~l~-~L~~L~ 152 (443)
.++.|++++|.+.+.+|..+..+++|++|++++|.+++.+|.. +.++++|++|++++|.+++.+|..+.+++ +|++|+
T Consensus 295 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~ 374 (768)
T 3rgz_A 295 TLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLD 374 (768)
T ss_dssp TCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEE
T ss_pred cCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEE
Confidence 4555555555555555555555555555555555555555544 55555666666666655555555555554 566666
Q ss_pred ccCCcccccCCccccC--CcCccEeeeeccccCccCCccccCCCCCCEEEccCCcCCccc-ccccCCCCCCEEEcccccC
Q 040495 153 VDTNYLVGEIPSAIGS--LFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRI-DSLVQLRNLRLLDIAFNHF 229 (443)
Q Consensus 153 l~~n~l~~~~p~~l~~--l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~-~~l~~l~~L~~L~l~~n~~ 229 (443)
+++|.+++.+|..+.. +++|++|++++|.+++.+|..+.++++|++|++++|.+.+.. ..+..+++|++|++++|.+
T Consensus 375 Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l 454 (768)
T 3rgz_A 375 LSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNML 454 (768)
T ss_dssp CCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCC
T ss_pred ccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcc
Confidence 6666666555655554 667888888888887778888888888888888888887665 6778888888888888888
Q ss_pred CCCCCccccCCCCCcEEEcccCcCcccCChhhhcCCCCCcEEeCCCCcCCccCCccCcCCCCCCEEecccCcCccccchh
Q 040495 230 SGMIPPPIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVD 309 (443)
Q Consensus 230 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~ 309 (443)
.+.+|..+..+++|++|++++|.+++.+|..+. .+++|++|++++|++++.+|.+++.+++|++|++++|++++.+|..
T Consensus 455 ~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~-~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~ 533 (768)
T 3rgz_A 455 EGEIPQELMYVKTLETLILDFNDLTGEIPSGLS-NCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAE 533 (768)
T ss_dssp CSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGG-GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGG
T ss_pred cCcCCHHHcCCCCceEEEecCCcccCcCCHHHh-cCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHH
Confidence 888888888888899999999988888887766 7889999999999998888888888999999999999999888888
Q ss_pred hhCCCCCCEEEccCCCCcccCCCchhh-----------------------------------------------------
Q 040495 310 FSRLKNLSFLNMGINNLGTRTANELDF----------------------------------------------------- 336 (443)
Q Consensus 310 ~~~l~~L~~L~l~~n~l~~~~~~~~~~----------------------------------------------------- 336 (443)
+..+++|+.|++++|.+++..|..+..
T Consensus 534 l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 613 (768)
T 3rgz_A 534 LGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPC 613 (768)
T ss_dssp GGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCS
T ss_pred HcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhcccccccc
Confidence 889999999999999888777643210
Q ss_pred -----------HhhhcCCCCCCEEEccCCcCcccCChhHhhhccCCCEEeccCCcCeecCchhhhcCCCCCeEeCcCCcC
Q 040495 337 -----------INLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNRISGTIPPGIRSHANLNWLTMDSNLF 405 (443)
Q Consensus 337 -----------~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~n~~ 405 (443)
+..+..+++|++|++++|+++|.+|..+..+ +.|+.|+|++|+++|.+|..++.+++|+.|+|++|++
T Consensus 614 ~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l-~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l 692 (768)
T 3rgz_A 614 NITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSM-PYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKL 692 (768)
T ss_dssp CTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGC-TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCC
T ss_pred ccccceecccCchhhhccccccEEECcCCcccccCCHHHhcc-ccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcc
Confidence 0124456788999999999999999988885 7899999999999999999999999999999999999
Q ss_pred cccCchhhcCCCCCCEEEccCCcCcccCCcc
Q 040495 406 TGTIPPVIGELKNLQLLDLGGNFLQGSIPSS 436 (443)
Q Consensus 406 ~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~ 436 (443)
+|.+|+.+..+++|++||+++|+++|.||+.
T Consensus 693 ~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~ 723 (768)
T 3rgz_A 693 DGRIPQAMSALTMLTEIDLSNNNLSGPIPEM 723 (768)
T ss_dssp EECCCGGGGGCCCCSEEECCSSEEEEECCSS
T ss_pred cCcCChHHhCCCCCCEEECcCCcccccCCCc
Confidence 9999999999999999999999999999963
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-44 Score=366.33 Aligned_cols=332 Identities=22% Similarity=0.259 Sum_probs=255.8
Q ss_pred ccccccCCCCCCEEeCCCCcCCCC-----------------Cchhhc--CCCccCeEEccCCCCCCCCChhhhcCCCCce
Q 040495 90 LSPYVGNLSFLRYINLANNGFLGE-----------------IPPQIG--RLNMLEGLVLSNNSFSGTIPTNLSRRSNLIE 150 (443)
Q Consensus 90 ~~~~~~~l~~L~~L~L~~n~~~~~-----------------~~~~l~--~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~ 150 (443)
+|..++++++|++|++++|.+++. +|..++ ++++|++|++++|.+.+.+|..+.++++|++
T Consensus 198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 277 (636)
T 4eco_A 198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQL 277 (636)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCE
T ss_pred CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCE
Confidence 677788889999999999988875 888888 8999999999999888888988888999999
Q ss_pred eeccCCc-ccc-cCCccccCC------cCccEeeeeccccCccCCc--cccCCCCCCEEEccCCcCCcccccccCCCCCC
Q 040495 151 LSVDTNY-LVG-EIPSAIGSL------FKLERLFIFHNHITGQLPA--SIGNLSSLLAFDVRENILWGRIDSLVQLRNLR 220 (443)
Q Consensus 151 L~l~~n~-l~~-~~p~~l~~l------~~L~~L~l~~n~l~~~~~~--~l~~l~~L~~L~l~~n~l~~~~~~l~~l~~L~ 220 (443)
|++++|+ +++ .+|..++.+ ++|++|++++|.++ .+|. .++++++|++|++++|.+.+..+.+..+++|+
T Consensus 278 L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~ 356 (636)
T 4eco_A 278 INVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLA 356 (636)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECCCCEEEEEES
T ss_pred EECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchhhhCCCCCCC
Confidence 9999988 887 788877765 88888888888888 7787 78888888888888888875555667777777
Q ss_pred EEEcccccCCCCCCccccCCCC-CcEEEcccCcCcccCChhhhcCC--CCCcEEeCCCCcCCccCCccCc-------CCC
Q 040495 221 LLDIAFNHFSGMIPPPIFNISS-LEVISLSENRFTGSLPVDAGVNL--PNLRQLSPNGNNFTGSIPVSLS-------NAS 290 (443)
Q Consensus 221 ~L~l~~n~~~~~~~~~l~~l~~-L~~L~l~~n~l~~~~~~~~~~~~--~~L~~L~L~~n~l~~~~~~~l~-------~~~ 290 (443)
+|++++|.+. .+|..+..+++ |++|++++|.++ .+|..+. .. ++|++|++++|.+++..|..+. .++
T Consensus 357 ~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~ 433 (636)
T 4eco_A 357 SLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFD-AKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGI 433 (636)
T ss_dssp EEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCC-TTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCC
T ss_pred EEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhh-hcccCccCEEECcCCcCCCcchhhhcccccccccCC
Confidence 7777777777 66667777777 777777777776 6665443 22 3677777777777666666665 555
Q ss_pred CCCEEecccCcCccccchhhhCCCCCCEEEccCCCCcccCCCch------------------------hhHhhhc--CCC
Q 040495 291 RLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANEL------------------------DFINLLA--NCS 344 (443)
Q Consensus 291 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~------------------------~~~~~~~--~~~ 344 (443)
+|++|++++|++++..+..+..+++|++|++++|.++......+ .++..+. .++
T Consensus 434 ~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~ 513 (636)
T 4eco_A 434 NVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLP 513 (636)
T ss_dssp CEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCT
T ss_pred CCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCccChhhhhccCC
Confidence 66666666666664333334445555555555555552222110 0113454 899
Q ss_pred CCCEEEccCCcCcccCChhHhhhccCCCEEec------cCCcCeecCchhhhcCCCCCeEeCcCCcCcccCchhhcCCCC
Q 040495 345 KLERLYFNRNRFQGVLPQSMANFSSTIKQIAM------GRNRISGTIPPGIRSHANLNWLTMDSNLFTGTIPPVIGELKN 418 (443)
Q Consensus 345 ~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~L------~~n~l~~~~p~~l~~~~~L~~L~L~~n~~~~~~p~~~~~l~~ 418 (443)
+|++|++++|++++ +|..+..+ ++|+.|++ ++|++.+.+|..+..+++|++|++++|.+ +.+|..+. ++
T Consensus 514 ~L~~L~Ls~N~l~~-ip~~~~~l-~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~ 588 (636)
T 4eco_A 514 YLVGIDLSYNSFSK-FPTQPLNS-STLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PN 588 (636)
T ss_dssp TCCEEECCSSCCSS-CCCGGGGC-SSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TT
T ss_pred CcCEEECCCCCCCC-cChhhhcC-CCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--Cc
Confidence 99999999999996 89988884 89999999 56888999999999999999999999999 58998766 79
Q ss_pred CCEEEccCCcCc
Q 040495 419 LQLLDLGGNFLQ 430 (443)
Q Consensus 419 L~~L~l~~n~l~ 430 (443)
|++||+++|++.
T Consensus 589 L~~L~Ls~N~l~ 600 (636)
T 4eco_A 589 ISVLDIKDNPNI 600 (636)
T ss_dssp CCEEECCSCTTC
T ss_pred CCEEECcCCCCc
Confidence 999999999776
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-42 Score=353.70 Aligned_cols=360 Identities=19% Similarity=0.204 Sum_probs=252.9
Q ss_pred CcEEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCCCCCchhhcCCCccCeEEccCCCCCCCCChhhhcCCCCceeec
Q 040495 74 QRVTRLDLRNQSIGGPLSPYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSV 153 (443)
Q Consensus 74 ~~v~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l 153 (443)
..++.|++++|.+++..+..|.++++|++|++++|.+.+..|..|+++++|++|++++|.+++..|..+.++++|++|++
T Consensus 33 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 112 (606)
T 3t6q_A 33 NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFF 112 (606)
T ss_dssp TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEEC
T ss_pred CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeec
Confidence 57899999999999888888999999999999999998888889999999999999999999888888999999999999
Q ss_pred cCCcccccCCccccCCcCccEeeeeccccCccCCccccCCCCCCEEEccCCcCCccc-ccccCCCCCC--EEEcccccCC
Q 040495 154 DTNYLVGEIPSAIGSLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRI-DSLVQLRNLR--LLDIAFNHFS 230 (443)
Q Consensus 154 ~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~-~~l~~l~~L~--~L~l~~n~~~ 230 (443)
++|.+++..|..++++++|++|++++|.+++..+..+..+++|++|++++|.+.+.. ..++.+++|+ .|++++|.+.
T Consensus 113 ~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~ 192 (606)
T 3t6q_A 113 IQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIA 192 (606)
T ss_dssp TTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCC
T ss_pred cccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccC
Confidence 999998666777888999999999999988644344555888888888888877665 5566666666 6666666655
Q ss_pred CCCC---------------------------------------------------------------------------c
Q 040495 231 GMIP---------------------------------------------------------------------------P 235 (443)
Q Consensus 231 ~~~~---------------------------------------------------------------------------~ 235 (443)
+..| .
T Consensus 193 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~ 272 (606)
T 3t6q_A 193 GIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSN 272 (606)
T ss_dssp EECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTT
T ss_pred ccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHH
Confidence 4333 3
Q ss_pred cccCCCCCcEEEcccCcCcccCChhhhcCCCCCcEEeCCCCcCCccCCccCcCCCCCCEEecccCcCccccch-hhhCCC
Q 040495 236 PIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSV-DFSRLK 314 (443)
Q Consensus 236 ~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~-~~~~l~ 314 (443)
.+..+++|++|++++|.++ .+|..+. .+++|++|++++|.+++..|..+..+++|++|++++|.+.+.++. .+..++
T Consensus 273 ~~~~l~~L~~L~l~~n~l~-~lp~~l~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~ 350 (606)
T 3t6q_A 273 TFHCFSGLQELDLTATHLS-ELPSGLV-GLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLE 350 (606)
T ss_dssp TTTTCTTCSEEECTTSCCS-CCCSSCC-SCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCT
T ss_pred HhccccCCCEEeccCCccC-CCChhhc-ccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccC
Confidence 3444555555555555555 4554443 455555555555555544455555555555555555555544433 255555
Q ss_pred CCCEEEccCCCCcccC--CCchhhHhhhcCCCCCCEEEccCCcCcccCChhHhhhccCCCEEeccCCcCeecCch-hhhc
Q 040495 315 NLSFLNMGINNLGTRT--ANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNRISGTIPP-GIRS 391 (443)
Q Consensus 315 ~L~~L~l~~n~l~~~~--~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~-~l~~ 391 (443)
+|++|++++|.+++.. + ..+..+++|++|++++|++++..|..+..+ ++|+.|++++|++++..|. .+..
T Consensus 351 ~L~~L~l~~n~l~~~~~~~------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~~ 423 (606)
T 3t6q_A 351 NLRELDLSHDDIETSDCCN------LQLRNLSHLQSLNLSYNEPLSLKTEAFKEC-PQLELLDLAFTRLKVKDAQSPFQN 423 (606)
T ss_dssp TCCEEECCSSCCCEEEEST------TTTTTCTTCCEEECCSCSCEEECTTTTTTC-TTCSEEECTTCCEECCTTCCTTTT
T ss_pred cCCEEECCCCccccccCcc------hhcccCCCCCEEECCCCcCCcCCHHHhcCC-ccCCeEECCCCcCCCcccchhhhC
Confidence 6666666666555443 2 346667777777777777776656655553 6777777777777765543 3677
Q ss_pred CCCCCeEeCcCCcCcccCchhhcCCCCCCEEEccCCcCccc-C--CccccCCCC
Q 040495 392 HANLNWLTMDSNLFTGTIPPVIGELKNLQLLDLGGNFLQGS-I--PSSLGNLTL 442 (443)
Q Consensus 392 ~~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~-~--p~~~~~l~~ 442 (443)
+++|++|++++|.+.+..|..+..+++|++|++++|++++. + +..+.++++
T Consensus 424 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~ 477 (606)
T 3t6q_A 424 LHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGR 477 (606)
T ss_dssp CTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTT
T ss_pred cccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCC
Confidence 77777777777777766777777777777777777777652 2 234555544
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-43 Score=344.00 Aligned_cols=354 Identities=21% Similarity=0.214 Sum_probs=307.5
Q ss_pred CcEEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCCCCC-chhhcCCCccCeEEccCCCCCCCCChhhhcCCCCceee
Q 040495 74 QRVTRLDLRNQSIGGPLSPYVGNLSFLRYINLANNGFLGEI-PPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELS 152 (443)
Q Consensus 74 ~~v~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~-~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~ 152 (443)
.+++.|++++|.+.+..+..+.++++|++|++++|.+.+.+ +..|.++++|++|++++|.+++..|..+.++++|++|+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 109 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT 109 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence 57999999999999988899999999999999999987655 56799999999999999999988899999999999999
Q ss_pred ccCCcccccCCcc--ccCCcCccEeeeeccccCccCCcc-ccCCCCCCEEEccCCcCCccc-ccccCC--CCCCEEEccc
Q 040495 153 VDTNYLVGEIPSA--IGSLFKLERLFIFHNHITGQLPAS-IGNLSSLLAFDVRENILWGRI-DSLVQL--RNLRLLDIAF 226 (443)
Q Consensus 153 l~~n~l~~~~p~~--l~~l~~L~~L~l~~n~l~~~~~~~-l~~l~~L~~L~l~~n~l~~~~-~~l~~l--~~L~~L~l~~ 226 (443)
+++|.+++..|.. ++.+++|++|++++|.+++..|.. +.++++|++|++++|.+.+.. ..+..+ .+++.+++++
T Consensus 110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~ 189 (455)
T 3v47_A 110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSS 189 (455)
T ss_dssp CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTT
T ss_pred CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccccccc
Confidence 9999998755554 899999999999999999887776 889999999999999988776 555554 7899999999
Q ss_pred ccCCCCCCcc--------ccCCCCCcEEEcccCcCcccCChhhhc--CCCCCcEEeCCCCcCCccC----------CccC
Q 040495 227 NHFSGMIPPP--------IFNISSLEVISLSENRFTGSLPVDAGV--NLPNLRQLSPNGNNFTGSI----------PVSL 286 (443)
Q Consensus 227 n~~~~~~~~~--------l~~l~~L~~L~l~~n~l~~~~~~~~~~--~~~~L~~L~L~~n~l~~~~----------~~~l 286 (443)
|.+.+..+.. +..+++|++|++++|.+++..|..+.. ..++++.|++++|...+.. +..+
T Consensus 190 n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 269 (455)
T 3v47_A 190 ITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTF 269 (455)
T ss_dssp CBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTT
T ss_pred CcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCccccc
Confidence 9998654433 346689999999999999877766542 2389999999988654321 1122
Q ss_pred c--CCCCCCEEecccCcCccccchhhhCCCCCCEEEccCCCCcccCCCchhhHhhhcCCCCCCEEEccCCcCcccCChhH
Q 040495 287 S--NASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQSM 364 (443)
Q Consensus 287 ~--~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~ 364 (443)
. ..++|++|++++|++.+..+..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+++..|..+
T Consensus 270 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~------~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 343 (455)
T 3v47_A 270 KGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDD------NAFWGLTHLLKLNLSQNFLGSIDSRMF 343 (455)
T ss_dssp GGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECT------TTTTTCTTCCEEECCSSCCCEECGGGG
T ss_pred ccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccCh------hHhcCcccCCEEECCCCccCCcChhHh
Confidence 2 23689999999999999999999999999999999999999877 568899999999999999997777777
Q ss_pred hhhccCCCEEeccCCcCeecCchhhhcCCCCCeEeCcCCcCcccCchhhcCCCCCCEEEccCCcCcccCC
Q 040495 365 ANFSSTIKQIAMGRNRISGTIPPGIRSHANLNWLTMDSNLFTGTIPPVIGELKNLQLLDLGGNFLQGSIP 434 (443)
Q Consensus 365 ~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p 434 (443)
..+ ++|+.|++++|++++..|..+..+++|++|++++|++++..++.+..+++|++|++++|++++.+|
T Consensus 344 ~~l-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 344 ENL-DKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp TTC-TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred cCc-ccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 764 899999999999998889999999999999999999996555677899999999999999999988
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-42 Score=352.44 Aligned_cols=363 Identities=19% Similarity=0.189 Sum_probs=218.3
Q ss_pred CcEEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCCCCCchhhcCCCccCeEEccCCCCCCCCChhhhcCCCCceeec
Q 040495 74 QRVTRLDLRNQSIGGPLSPYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSV 153 (443)
Q Consensus 74 ~~v~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l 153 (443)
.+++.|++++|.+.+..|..|.++++|++|++++|.+++..|..++++++|++|++++|.+++..|..+.++++|++|++
T Consensus 57 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L 136 (606)
T 3t6q_A 57 INLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYL 136 (606)
T ss_dssp TTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEEC
T ss_pred ccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEEC
Confidence 46777777777777766777777777777777777777666777777777777777777777555566667777777777
Q ss_pred cCCcccccCCccccCCcCccEeeeeccccCccCCccccCCCCCC--EEEccCCcCCcc----------------------
Q 040495 154 DTNYLVGEIPSAIGSLFKLERLFIFHNHITGQLPASIGNLSSLL--AFDVRENILWGR---------------------- 209 (443)
Q Consensus 154 ~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~--~L~l~~n~l~~~---------------------- 209 (443)
++|.+.+..++.+..+++|++|++++|.+++..|..+..+++|+ .+++++|.+.+.
T Consensus 137 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~ 216 (606)
T 3t6q_A 137 GSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLL 216 (606)
T ss_dssp CSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHH
T ss_pred CCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHH
Confidence 77776643223333366666666666666554444455555444 444444432211
Q ss_pred -----------------------------------------------------c-ccccCCCCCCEEEcccccCCCCCCc
Q 040495 210 -----------------------------------------------------I-DSLVQLRNLRLLDIAFNHFSGMIPP 235 (443)
Q Consensus 210 -----------------------------------------------------~-~~l~~l~~L~~L~l~~n~~~~~~~~ 235 (443)
. ..+..+++|++|++++|.++ .+|.
T Consensus 217 ~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~ 295 (606)
T 3t6q_A 217 VIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPS 295 (606)
T ss_dssp HHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCS
T ss_pred HHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCCh
Confidence 1 11344455666666666555 4455
Q ss_pred cccCCCCCcEEEcccCcCc------------------------ccCChhhhcCCCCCcEEeCCCCcCCccC--CccCcCC
Q 040495 236 PIFNISSLEVISLSENRFT------------------------GSLPVDAGVNLPNLRQLSPNGNNFTGSI--PVSLSNA 289 (443)
Q Consensus 236 ~l~~l~~L~~L~l~~n~l~------------------------~~~~~~~~~~~~~L~~L~L~~n~l~~~~--~~~l~~~ 289 (443)
.+..+++|++|++++|.++ +.+|...+..+++|++|++++|.+++.. +..+..+
T Consensus 296 ~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l 375 (606)
T 3t6q_A 296 GLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNL 375 (606)
T ss_dssp SCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTC
T ss_pred hhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccC
Confidence 5555555555555555554 3333332334445555555555554333 4445555
Q ss_pred CCCCEEecccCcCccccchhhhCCCCCCEEEccCCCCcccCCCchhhHhhhcCCCCCCEEEccCCcCcccCChhHhhhcc
Q 040495 290 SRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFSS 369 (443)
Q Consensus 290 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~ 369 (443)
++|++|++++|++.+..+..+..+++|+.|++++|.+.+..+. ..+..+++|++|++++|.+++..|..+..+ +
T Consensus 376 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-----~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l-~ 449 (606)
T 3t6q_A 376 SHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQ-----SPFQNLHLLKVLNLSHSLLDISSEQLFDGL-P 449 (606)
T ss_dssp TTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTC-----CTTTTCTTCCEEECTTCCCBTTCTTTTTTC-T
T ss_pred CCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccc-----hhhhCcccCCEEECCCCccCCcCHHHHhCC-C
Confidence 5555555555555555555555556666666666655544331 235566677777777777765555555553 6
Q ss_pred CCCEEeccCCcCeec---CchhhhcCCCCCeEeCcCCcCcccCchhhcCCCCCCEEEccCCcCcccCCccccCCCCC
Q 040495 370 TIKQIAMGRNRISGT---IPPGIRSHANLNWLTMDSNLFTGTIPPVIGELKNLQLLDLGGNFLQGSIPSSLGNLTLL 443 (443)
Q Consensus 370 ~L~~L~L~~n~l~~~---~p~~l~~~~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L 443 (443)
+|+.|++++|++++. .+..+..+++|++|++++|.+++..|..+..+++|++|++++|++++..|+.+.+++.|
T Consensus 450 ~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L 526 (606)
T 3t6q_A 450 ALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI 526 (606)
T ss_dssp TCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC
T ss_pred CCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc
Confidence 677777777776652 22456667777777777777776666677777777777777777777777666666543
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-43 Score=331.00 Aligned_cols=292 Identities=29% Similarity=0.478 Sum_probs=223.8
Q ss_pred CCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCC--ccceeeCCCC--CcEEEEEcCCCCCcc--cccccccCCCCCCE
Q 040495 29 NSNETDRLALLAIKLQLHDPLGVTSSWNNSMSLCQ--WTGVTCGRRH--QRVTRLDLRNQSIGG--PLSPYVGNLSFLRY 102 (443)
Q Consensus 29 ~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~c~--w~gv~c~~~~--~~v~~L~l~~~~~~~--~~~~~~~~l~~L~~ 102 (443)
.|.++|++||++||.++.+|. .+.+|..+.+||. |.||.|+... ++|+.|+++++.+.+ .+|..+.++++|++
T Consensus 2 ~c~~~~~~aL~~~k~~~~~~~-~l~~W~~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~ 80 (313)
T 1ogq_A 2 LCNPQDKQALLQIKKDLGNPT-TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNF 80 (313)
T ss_dssp CSCHHHHHHHHHHHHHTTCCG-GGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCSE
T ss_pred CCCHHHHHHHHHHHHhcCCcc-cccCCCCCCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccChhHhCCCCCCe
Confidence 588999999999999998886 7889988888998 9999998654 789999999999999 89999999999999
Q ss_pred EeCCC-CcCCCCCchhhcCCCccCeEEccCCCCCCCCChhhhcCCCCceeeccCCcccccCCccccCCcCccEeeeeccc
Q 040495 103 INLAN-NGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSVDTNYLVGEIPSAIGSLFKLERLFIFHNH 181 (443)
Q Consensus 103 L~L~~-n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~ 181 (443)
|++++ |.+.+.+|..++++++|++|++++|.+++.+|..+.++++|++|++++|.+++.+|..+..+++|++|++++|.
T Consensus 81 L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~ 160 (313)
T 1ogq_A 81 LYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNR 160 (313)
T ss_dssp EEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSC
T ss_pred eeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCc
Confidence 99995 99999999999999999999999999998999999999999999999999998899999999999999999999
Q ss_pred cCccCCccccCCC-CCCEEEccCCcCCccc-ccccCCCCCCEEEcccccCCCCCCccccCCCCCcEEEcccCcCcccCCh
Q 040495 182 ITGQLPASIGNLS-SLLAFDVRENILWGRI-DSLVQLRNLRLLDIAFNHFSGMIPPPIFNISSLEVISLSENRFTGSLPV 259 (443)
Q Consensus 182 l~~~~~~~l~~l~-~L~~L~l~~n~l~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~ 259 (443)
+++.+|..+..++ +|++|++++|.+.+.. ..+..++ |++|++++|.+.+..|..+..+++|++|++++|.+++.+|.
T Consensus 161 l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 239 (313)
T 1ogq_A 161 ISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK 239 (313)
T ss_dssp CEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG
T ss_pred ccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc
Confidence 9988888888876 7777777777666444 4455544 66666666666665566666666666666666666544433
Q ss_pred hhhcCCCCCcEEeCCCCcCCccCCccCcCCCCCCEEecccCcCccccchhhhCCCCCCEEEccCCC
Q 040495 260 DAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINN 325 (443)
Q Consensus 260 ~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 325 (443)
+. .+++|++|++++|++++.+|..+..+++|++|++++|+++|.+|.. ..+++|+.+++++|.
T Consensus 240 -~~-~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 240 -VG-LSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK 302 (313)
T ss_dssp -CC-CCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred -cc-ccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCC
Confidence 22 4455555555555555555555555555555555555555555443 444445555554443
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-42 Score=352.88 Aligned_cols=357 Identities=20% Similarity=0.228 Sum_probs=251.9
Q ss_pred CcEEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCCCCCchhhcCCCccCeEEccCCCCCCCCChhhhcCCCCceeec
Q 040495 74 QRVTRLDLRNQSIGGPLSPYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSV 153 (443)
Q Consensus 74 ~~v~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l 153 (443)
.+++.|++++|.+.+..+..|.++++|++|++++|.+++..|.+|+++++|++|++++|.+++..|..|.++++|++|++
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 111 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVA 111 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEEC
T ss_pred CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEc
Confidence 57889999999988877778888999999999999888777888888999999999999888777888888999999999
Q ss_pred cCCcccccCCccccCCcCccEeeeeccccCc-cCCccccCCCCCCEEEccCCcCCccc-cccc-----------------
Q 040495 154 DTNYLVGEIPSAIGSLFKLERLFIFHNHITG-QLPASIGNLSSLLAFDVRENILWGRI-DSLV----------------- 214 (443)
Q Consensus 154 ~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~l~~n~l~~~~-~~l~----------------- 214 (443)
++|.+++..+..++++++|++|++++|.+++ .+|..++++++|++|++++|.+.+.. ..++
T Consensus 112 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n 191 (606)
T 3vq2_A 112 VETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLN 191 (606)
T ss_dssp TTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTC
T ss_pred cCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCC
Confidence 9998886666778888899999999988875 56888888888888888888665432 1111
Q ss_pred --------------------------------------------------------------------------------
Q 040495 215 -------------------------------------------------------------------------------- 214 (443)
Q Consensus 215 -------------------------------------------------------------------------------- 214 (443)
T Consensus 192 ~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~ 271 (606)
T 3vq2_A 192 PIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYT 271 (606)
T ss_dssp CCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCC
T ss_pred CcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheecccc
Confidence
Q ss_pred ---------------------------------CCCCCCEEEcccccCCCCCCc--------------------cccCCC
Q 040495 215 ---------------------------------QLRNLRLLDIAFNHFSGMIPP--------------------PIFNIS 241 (443)
Q Consensus 215 ---------------------------------~l~~L~~L~l~~n~~~~~~~~--------------------~l~~l~ 241 (443)
.+++|++|++++|.+ +.+|. .+..++
T Consensus 272 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l-~~lp~~~l~~L~~L~l~~n~~~~~~~~~~l~ 350 (606)
T 3vq2_A 272 NDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQL-KQFPTLDLPFLKSLTLTMNKGSISFKKVALP 350 (606)
T ss_dssp TTCCGGGGSCGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCC-SSCCCCCCSSCCEEEEESCSSCEECCCCCCT
T ss_pred ccccccccccccCCCCCEEEecCccchhhhhccccccCCEEEcccccC-cccccCCCCccceeeccCCcCccchhhccCC
Confidence 111233333333333 22221 112233
Q ss_pred CCcEEEcccCcCccc--CChhhhcCCCCCcEEeCCCCcCCccCCccCcCCCCCCEEecccCcCccccc-hhhhCCCCCCE
Q 040495 242 SLEVISLSENRFTGS--LPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVS-VDFSRLKNLSF 318 (443)
Q Consensus 242 ~L~~L~l~~n~l~~~--~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~ 318 (443)
+|++|++++|.+++. +|..+. .+++|++|++++|.++ .+|..+..+++|++|++++|++.+..+ ..+..+++|++
T Consensus 351 ~L~~L~ls~n~l~~~~~~~~~~~-~~~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~ 428 (606)
T 3vq2_A 351 SLSYLDLSRNALSFSGCCSYSDL-GTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLY 428 (606)
T ss_dssp TCCEEECCSSCEEEEEECCHHHH-CCSCCCEEECCSCSEE-EECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCE
T ss_pred CCCEEECcCCccCCCcchhhhhc-cCCcccEeECCCCccc-cchhhccCCCCCCeeECCCCccCCccChhhhhccccCCE
Confidence 344444444444322 133333 4555666666666555 344566666777777777777766655 45667777777
Q ss_pred EEccCCCCcccCCCchhhHhhhcCCCCCCEEEccCCcCccc-CChhHhhhccCCCEEeccCCcCeecCchhhhcCCCCCe
Q 040495 319 LNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGV-LPQSMANFSSTIKQIAMGRNRISGTIPPGIRSHANLNW 397 (443)
Q Consensus 319 L~l~~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~ 397 (443)
|++++|.+++..+ ..+..+++|++|++++|++++. +|..+..+ ++|+.|++++|++++..|..+..+++|++
T Consensus 429 L~l~~n~l~~~~~------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 501 (606)
T 3vq2_A 429 LDISYTNTKIDFD------GIFLGLTSLNTLKMAGNSFKDNTLSNVFANT-TNLTFLDLSKCQLEQISWGVFDTLHRLQL 501 (606)
T ss_dssp EECTTSCCEECCT------TTTTTCTTCCEEECTTCEEGGGEECSCCTTC-TTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred EECcCCCCCccch------hhhcCCCCCCEEECCCCcCCCcchHHhhccC-CCCCEEECCCCcCCccChhhhcccccCCE
Confidence 7777777776665 4567777888888888887763 56555553 77888888888888777777888888888
Q ss_pred EeCcCCcCcccCchhhcCCCCCCEEEccCCcCcccCCccccCCC
Q 040495 398 LTMDSNLFTGTIPPVIGELKNLQLLDLGGNFLQGSIPSSLGNLT 441 (443)
Q Consensus 398 L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~ 441 (443)
|++++|++++..|..+.++++|++|++++|+++ .+|..+.+++
T Consensus 502 L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~ 544 (606)
T 3vq2_A 502 LNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFP 544 (606)
T ss_dssp EECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSC
T ss_pred EECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhc
Confidence 888888888777778888888888888888887 6776666553
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-42 Score=346.80 Aligned_cols=363 Identities=19% Similarity=0.197 Sum_probs=255.7
Q ss_pred CCCccceeeCCC-----------CCcEEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCCCCCchhhcCCCccCeEEc
Q 040495 61 LCQWTGVTCGRR-----------HQRVTRLDLRNQSIGGPLSPYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVL 129 (443)
Q Consensus 61 ~c~w~gv~c~~~-----------~~~v~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l 129 (443)
.|.|.|+ |+.. ..++++|++++|.+++..+..+.++++|++|++++|.+++..|..|+++++|++|++
T Consensus 3 ~C~~~~~-c~~~~~~l~~ip~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L 81 (549)
T 2z81_A 3 SCDASGV-CDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDL 81 (549)
T ss_dssp EECTTSE-EECTTSCCSSCCSCCCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred cCCCCce-EECCCCccccccccCCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEEC
Confidence 3777776 6432 147899999999998888888999999999999999999888888999999999999
Q ss_pred cCCCCCCCCChhhhcCCCCceeeccCCcccc-cCCccccCCcCccEeeeeccccCccCC-ccccCCCCCCEEEccCCcCC
Q 040495 130 SNNSFSGTIPTNLSRRSNLIELSVDTNYLVG-EIPSAIGSLFKLERLFIFHNHITGQLP-ASIGNLSSLLAFDVRENILW 207 (443)
Q Consensus 130 ~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~-~~p~~l~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~ 207 (443)
++|.+++..|..+.++++|++|++++|.+++ ..|..++++++|++|++++|.+.+.+| ..+.++++|++|++++|.+.
T Consensus 82 s~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~ 161 (549)
T 2z81_A 82 SDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLR 161 (549)
T ss_dssp TTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCC
T ss_pred CCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCccc
Confidence 9999997777779999999999999999885 456778888999999999988443444 57888888888888888776
Q ss_pred ccc-ccc------------------------cCCCCCCEEEcccccCCCCC--Cccc-cC--------------------
Q 040495 208 GRI-DSL------------------------VQLRNLRLLDIAFNHFSGMI--PPPI-FN-------------------- 239 (443)
Q Consensus 208 ~~~-~~l------------------------~~l~~L~~L~l~~n~~~~~~--~~~l-~~-------------------- 239 (443)
+.. ..+ ..+++|++|++++|.+.+.. +..+ ..
T Consensus 162 ~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 241 (549)
T 2z81_A 162 NYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFN 241 (549)
T ss_dssp EECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHH
T ss_pred ccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHH
Confidence 543 333 23677888888888776531 1000 00
Q ss_pred -------------------------------------------------------------------CCCCcEEEcccCc
Q 040495 240 -------------------------------------------------------------------ISSLEVISLSENR 252 (443)
Q Consensus 240 -------------------------------------------------------------------l~~L~~L~l~~n~ 252 (443)
.++|++|++++|.
T Consensus 242 ~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~ 321 (549)
T 2z81_A 242 ELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSK 321 (549)
T ss_dssp HHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSC
T ss_pred HHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCc
Confidence 1245555555555
Q ss_pred CcccCChhhhcCCCCCcEEeCCCCcCCccCCc---cCcCCCCCCEEecccCcCccccc--hhhhCCCCCCEEEccCCCCc
Q 040495 253 FTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPV---SLSNASRLEMIEFSRNQFSGRVS--VDFSRLKNLSFLNMGINNLG 327 (443)
Q Consensus 253 l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~---~l~~~~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~l~~n~l~ 327 (443)
+. .+|..++..+++|++|++++|++++.+|. .++.+++|++|++++|++++..+ ..+..+++|++|++++|.++
T Consensus 322 l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 400 (549)
T 2z81_A 322 VF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH 400 (549)
T ss_dssp CC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC
T ss_pred cc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc
Confidence 54 56666654678888888888888876543 36777888888888888876543 45778888888888888887
Q ss_pred ccCCCchhhHhhhcCCCCCCEEEccCCcCcccCChhHhhhccCCCEEeccCCcCeecCchhhhcCCCCCeEeCcCCcCcc
Q 040495 328 TRTANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNRISGTIPPGIRSHANLNWLTMDSNLFTG 407 (443)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~n~~~~ 407 (443)
.. | ..+..+++|++|++++|+++ .+|..+ +++|+.|++++|++++.+ ..+++|++|++++|+++
T Consensus 401 ~l-p------~~~~~~~~L~~L~Ls~N~l~-~l~~~~---~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~- 464 (549)
T 2z81_A 401 PM-P------DSCQWPEKMRFLNLSSTGIR-VVKTCI---PQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK- 464 (549)
T ss_dssp CC-C------SCCCCCTTCCEEECTTSCCS-CCCTTS---CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-
T ss_pred cC-C------hhhcccccccEEECCCCCcc-cccchh---cCCceEEECCCCChhhhc----ccCChhcEEECCCCccC-
Confidence 43 3 23556677777777777776 444332 235666666666655432 34556666666666665
Q ss_pred cCchhhcCCCCCCEEEccCCcCcccCCccccCCCC
Q 040495 408 TIPPVIGELKNLQLLDLGGNFLQGSIPSSLGNLTL 442 (443)
Q Consensus 408 ~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~ 442 (443)
.+|. ...+++|++|++++|++++..|+.+.++++
T Consensus 465 ~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 498 (549)
T 2z81_A 465 TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTS 498 (549)
T ss_dssp SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTT
T ss_pred cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcc
Confidence 5554 344566666666666666555555555443
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-41 Score=355.19 Aligned_cols=329 Identities=20% Similarity=0.259 Sum_probs=256.9
Q ss_pred ccccccCCCCCCEEeCCCCcCCC-----------------CCchhhc--CCCccCeEEccCCCCCCCCChhhhcCCCCce
Q 040495 90 LSPYVGNLSFLRYINLANNGFLG-----------------EIPPQIG--RLNMLEGLVLSNNSFSGTIPTNLSRRSNLIE 150 (443)
Q Consensus 90 ~~~~~~~l~~L~~L~L~~n~~~~-----------------~~~~~l~--~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~ 150 (443)
+|..+.++++|++|+|++|.+++ .+|..++ ++++|++|++++|.+.+.+|..+.++++|++
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~ 519 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS 519 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCE
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCE
Confidence 66778888888888888888887 3788877 8888888888888888888888888888888
Q ss_pred eeccCCc-ccc-cCCccccCCc-------CccEeeeeccccCccCCc--cccCCCCCCEEEccCCcCCcccccccCCCCC
Q 040495 151 LSVDTNY-LVG-EIPSAIGSLF-------KLERLFIFHNHITGQLPA--SIGNLSSLLAFDVRENILWGRIDSLVQLRNL 219 (443)
Q Consensus 151 L~l~~n~-l~~-~~p~~l~~l~-------~L~~L~l~~n~l~~~~~~--~l~~l~~L~~L~l~~n~l~~~~~~l~~l~~L 219 (443)
|++++|+ +++ .+|..++.++ +|++|++++|.++ .+|. .+.++++|++|++++|.+... +.+..+++|
T Consensus 520 L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~~l-p~~~~L~~L 597 (876)
T 4ecn_A 520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVRHL-EAFGTNVKL 597 (876)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCCBC-CCCCTTSEE
T ss_pred EECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcccc-hhhcCCCcc
Confidence 8888887 777 6777665554 8888888888888 7777 788888888888888877733 467777777
Q ss_pred CEEEcccccCCCCCCccccCCCC-CcEEEcccCcCcccCChhhhc------------------------------CCCCC
Q 040495 220 RLLDIAFNHFSGMIPPPIFNISS-LEVISLSENRFTGSLPVDAGV------------------------------NLPNL 268 (443)
Q Consensus 220 ~~L~l~~n~~~~~~~~~l~~l~~-L~~L~l~~n~l~~~~~~~~~~------------------------------~~~~L 268 (443)
+.|++++|.+. .+|..+..+++ |++|++++|.++ .+|..+.. ..++|
T Consensus 598 ~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L 675 (876)
T 4ecn_A 598 TDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINA 675 (876)
T ss_dssp SEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCE
T ss_pred eEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCc
Confidence 77777777777 66766777776 777777777766 55543220 11245
Q ss_pred cEEeCCCCcCCccCCccC-cCCCCCCEEecccCcCccccchhhhC--------CCCCCEEEccCCCCcccCCCchhhHhh
Q 040495 269 RQLSPNGNNFTGSIPVSL-SNASRLEMIEFSRNQFSGRVSVDFSR--------LKNLSFLNMGINNLGTRTANELDFINL 339 (443)
Q Consensus 269 ~~L~L~~n~l~~~~~~~l-~~~~~L~~L~l~~n~l~~~~~~~~~~--------l~~L~~L~l~~n~l~~~~~~~~~~~~~ 339 (443)
+.|++++|.++ .+|..+ ..+++|+.|++++|+++ .+|..+.. +++|+.|++++|.++. .| ..
T Consensus 676 ~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~-lp------~~ 746 (876)
T 4ecn_A 676 STVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS-LS------DD 746 (876)
T ss_dssp EEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCCC-CC------GG
T ss_pred CEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCcc-ch------HH
Confidence 55555555555 344433 47889999999999998 55554332 2399999999999994 44 34
Q ss_pred hc--CCCCCCEEEccCCcCcccCChhHhhhccCCCEEeccC------CcCeecCchhhhcCCCCCeEeCcCCcCcccCch
Q 040495 340 LA--NCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGR------NRISGTIPPGIRSHANLNWLTMDSNLFTGTIPP 411 (443)
Q Consensus 340 ~~--~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~L~~------n~l~~~~p~~l~~~~~L~~L~L~~n~~~~~~p~ 411 (443)
+. .+++|+.|++++|++++ +|..+..+ ++|+.|+|++ |++.+.+|..+..+++|+.|+|++|++ +.+|.
T Consensus 747 l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L-~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~ 823 (876)
T 4ecn_A 747 FRATTLPYLSNMDVSYNCFSS-FPTQPLNS-SQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDE 823 (876)
T ss_dssp GSTTTCTTCCEEECCSSCCSS-CCCGGGGC-TTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCS
T ss_pred hhhccCCCcCEEEeCCCCCCc-cchhhhcC-CCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCH
Confidence 55 89999999999999996 89888875 8999999976 888999999999999999999999999 69999
Q ss_pred hhcCCCCCCEEEccCCcCcccCCcc
Q 040495 412 VIGELKNLQLLDLGGNFLQGSIPSS 436 (443)
Q Consensus 412 ~~~~l~~L~~L~l~~n~l~~~~p~~ 436 (443)
.+. ++|+.|||++|++...-+..
T Consensus 824 ~l~--~~L~~LdLs~N~l~~i~~~~ 846 (876)
T 4ecn_A 824 KLT--PQLYILDIADNPNISIDVTS 846 (876)
T ss_dssp CCC--SSSCEEECCSCTTCEEECGG
T ss_pred hhc--CCCCEEECCCCCCCccChHH
Confidence 866 69999999999987544443
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-40 Score=341.81 Aligned_cols=367 Identities=20% Similarity=0.177 Sum_probs=216.7
Q ss_pred CcEEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCCCCCchhhcCCCccCeEEccCCCCCCCCChhhhcCCCCceeec
Q 040495 74 QRVTRLDLRNQSIGGPLSPYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSV 153 (443)
Q Consensus 74 ~~v~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l 153 (443)
.++++|++++|.+.+..+..+.++++|++|++++|.+++..|..++++++|++|++++|.+++..+..|.++++|++|++
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 104 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL 104 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEEC
Confidence 57888999988888877777888888999999888888878888888888888888888888555556888888888888
Q ss_pred cCCcccccCCccccCCcCccEeeeeccccCccCCccccCCCCCCEEEccCCcCCccc-ccc--cCCCCCCEEEcccccCC
Q 040495 154 DTNYLVGEIPSAIGSLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRI-DSL--VQLRNLRLLDIAFNHFS 230 (443)
Q Consensus 154 ~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~-~~l--~~l~~L~~L~l~~n~~~ 230 (443)
++|.+++..|..++++++|++|++++|.+++..|..+.++++|++|++++|.+++.. ..+ ..+++|++|++++|.+.
T Consensus 105 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~ 184 (680)
T 1ziw_A 105 MSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIK 184 (680)
T ss_dssp CSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCC
T ss_pred CCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCccc
Confidence 888888666677888888888888888888777777788888888888888776554 222 23355566666555554
Q ss_pred CCCCcc---------------------------------------------------ccCCC--CCcEEEcccCcCcccC
Q 040495 231 GMIPPP---------------------------------------------------IFNIS--SLEVISLSENRFTGSL 257 (443)
Q Consensus 231 ~~~~~~---------------------------------------------------l~~l~--~L~~L~l~~n~l~~~~ 257 (443)
+..|.. +..++ +|++|++++|.+++..
T Consensus 185 ~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~ 264 (680)
T 1ziw_A 185 EFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVG 264 (680)
T ss_dssp CBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEEC
T ss_pred ccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccC
Confidence 433332 22222 2555555555555333
Q ss_pred ChhhhcCCCCCcEEeCCCCcCCccCCcc---------------------------------CcCCCCCCEEecccCcCcc
Q 040495 258 PVDAGVNLPNLRQLSPNGNNFTGSIPVS---------------------------------LSNASRLEMIEFSRNQFSG 304 (443)
Q Consensus 258 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~---------------------------------l~~~~~L~~L~l~~n~l~~ 304 (443)
|..+. .+++|++|++++|++++..|.. +..+++|++|++++|++++
T Consensus 265 ~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~ 343 (680)
T 1ziw_A 265 NDSFA-WLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPG 343 (680)
T ss_dssp TTTTT-TCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCC
T ss_pred ccccc-CcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCC
Confidence 33222 4555555555555554443332 3334444455555555555
Q ss_pred ccchhhhCCCCCCEEEccCCCCcccCCCc--h--------------------hhHhhhcCCCCCCEEEccCCcCcccCCh
Q 040495 305 RVSVDFSRLKNLSFLNMGINNLGTRTANE--L--------------------DFINLLANCSKLERLYFNRNRFQGVLPQ 362 (443)
Q Consensus 305 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~--~--------------------~~~~~~~~~~~L~~L~l~~n~l~~~~p~ 362 (443)
..+..+..+++|++|++++|.+....... + ..+..+..+++|++|++++|++++.+|.
T Consensus 344 ~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 423 (680)
T 1ziw_A 344 IKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTG 423 (680)
T ss_dssp CCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCS
T ss_pred CChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCc
Confidence 44444555555555555544322110000 0 0012345555666666666666555543
Q ss_pred hHhhhccCCCEEeccCCcCeecCchhhhcCCCCCeEeCcCCcCc--ccCchhhcCCCCCCEEEccCCcCcccCCccccCC
Q 040495 363 SMANFSSTIKQIAMGRNRISGTIPPGIRSHANLNWLTMDSNLFT--GTIPPVIGELKNLQLLDLGGNFLQGSIPSSLGNL 440 (443)
Q Consensus 363 ~~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~n~~~--~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l 440 (443)
..+...++|+.|++++|++++..+..+..+++|++|++++|.+. +.+|..+..+++|++|++++|++++..|..|.++
T Consensus 424 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l 503 (680)
T 1ziw_A 424 QEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGL 503 (680)
T ss_dssp GGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred ccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccc
Confidence 22222355555555555555433333333333444444333332 3344445555555555555555554433444443
Q ss_pred C
Q 040495 441 T 441 (443)
Q Consensus 441 ~ 441 (443)
+
T Consensus 504 ~ 504 (680)
T 1ziw_A 504 E 504 (680)
T ss_dssp T
T ss_pred c
Confidence 3
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-41 Score=342.25 Aligned_cols=359 Identities=20% Similarity=0.218 Sum_probs=204.1
Q ss_pred CcEEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCCCCCchhhcCCCccCeEEccCCCCCCCCChhhhcCCCCceeec
Q 040495 74 QRVTRLDLRNQSIGGPLSPYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSV 153 (443)
Q Consensus 74 ~~v~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l 153 (443)
.+++.|++++|.+++..+..|.++++|++|++++|.+++..+..|+++++|++|++++|.+++..|..|.++++|++|++
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccc
Confidence 45677777777777666666777777777777777777666666777777777777777777666667777777777777
Q ss_pred cCCcccccCCccccCCcCccEeeeeccccCc-cCCccccCCCCCCEEEccCCcCCccc-cccc-----------------
Q 040495 154 DTNYLVGEIPSAIGSLFKLERLFIFHNHITG-QLPASIGNLSSLLAFDVRENILWGRI-DSLV----------------- 214 (443)
Q Consensus 154 ~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~l~~n~l~~~~-~~l~----------------- 214 (443)
++|.+++..+..++++++|++|++++|.+++ .+|..+.++++|++|++++|.+.+.. ..++
T Consensus 108 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n 187 (570)
T 2z63_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187 (570)
T ss_dssp TTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTC
T ss_pred cccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCC
Confidence 7777764434456677777777777777665 35666777777777777766554332 1122
Q ss_pred --------------------------------------------------------------------------------
Q 040495 215 -------------------------------------------------------------------------------- 214 (443)
Q Consensus 215 -------------------------------------------------------------------------------- 214 (443)
T Consensus 188 ~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~ 267 (570)
T 2z63_A 188 PMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYL 267 (570)
T ss_dssp CCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEET
T ss_pred CceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcc
Confidence
Q ss_pred ------------CCCCCCEEEcccccCCCCCCccccCCCCCcEEEcccCcCcccCChhhh-------------------c
Q 040495 215 ------------QLRNLRLLDIAFNHFSGMIPPPIFNISSLEVISLSENRFTGSLPVDAG-------------------V 263 (443)
Q Consensus 215 ------------~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~-------------------~ 263 (443)
.+++|++|++++|.+. .+|..+..+ +|++|++++|.+. .+|.... .
T Consensus 268 ~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~~~l~~L~~L~l~~n~~~~~~~~~ 344 (570)
T 2z63_A 268 DYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPTLKLKSLKRLTFTSNKGGNAFSEV 344 (570)
T ss_dssp TEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCBCBCSSCCEEEEESCBSCCBCCCC
T ss_pred hhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCcccccccCEEeCcCCccccccccc
Confidence 2344555555555554 344444443 4444444444443 3332100 1
Q ss_pred CCCCCcEEeCCCCcCCccC--CccCcCCCCCCEEecccCcCccccchhhhCCCCCCEEEccCCCCcccCCCchhhHhhhc
Q 040495 264 NLPNLRQLSPNGNNFTGSI--PVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLA 341 (443)
Q Consensus 264 ~~~~L~~L~L~~n~l~~~~--~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~ 341 (443)
.+++|++|++++|++++.. +..+..+++|++|++++|.+.+..+. +..+++|+.|++++|.+.+..+. ..+.
T Consensus 345 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~-----~~~~ 418 (570)
T 2z63_A 345 DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEF-----SVFL 418 (570)
T ss_dssp BCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTS-----CTTT
T ss_pred cCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccch-----hhhh
Confidence 3445555555555554322 34444555555555555555543333 45555555555555555444321 2344
Q ss_pred CCCCCCEEEccCCcCcccCChhHhhhccCCCEEeccCCcCe-ecCchhhhcCCCCCeEeCcCCcCcccCchhhcCCCCCC
Q 040495 342 NCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNRIS-GTIPPGIRSHANLNWLTMDSNLFTGTIPPVIGELKNLQ 420 (443)
Q Consensus 342 ~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~-~~~p~~l~~~~~L~~L~L~~n~~~~~~p~~~~~l~~L~ 420 (443)
.+++|++|++++|.+++..|..+..+ ++|+.|++++|+++ +.+|..+..+++|++|++++|++++..|..+..+++|+
T Consensus 419 ~l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 497 (570)
T 2z63_A 419 SLRNLIYLDISHTHTRVAFNGIFNGL-SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQ 497 (570)
T ss_dssp TCTTCCEEECTTSCCEECCTTTTTTC-TTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred cCCCCCEEeCcCCcccccchhhhhcC-CcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCC
Confidence 55555555665555554444444442 55555555555554 34555555555555555555555555555555555555
Q ss_pred EEEccCCcCcccCCccccCCCC
Q 040495 421 LLDLGGNFLQGSIPSSLGNLTL 442 (443)
Q Consensus 421 ~L~l~~n~l~~~~p~~~~~l~~ 442 (443)
+|++++|++++..|..|.++++
T Consensus 498 ~L~l~~n~l~~~~~~~~~~l~~ 519 (570)
T 2z63_A 498 VLNMASNQLKSVPDGIFDRLTS 519 (570)
T ss_dssp EEECCSSCCSCCCTTTTTTCTT
T ss_pred EEeCCCCcCCCCCHHHhhcccC
Confidence 5555555555554444544443
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-40 Score=333.76 Aligned_cols=343 Identities=19% Similarity=0.197 Sum_probs=276.1
Q ss_pred CcEEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCCCCCchhhcCCCccCeEEccCCCCCCCCChhhhcCCCCceeec
Q 040495 74 QRVTRLDLRNQSIGGPLSPYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSV 153 (443)
Q Consensus 74 ~~v~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l 153 (443)
.+++.|++++|.+.+..+..+.++++|++|++++|.+++..|..|+++++|++|++++|.++ .+|.. .+++|++|++
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L 97 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDL 97 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEEC
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEec
Confidence 57899999999999888888999999999999999999878889999999999999999998 66766 8899999999
Q ss_pred cCCcccc-cCCccccCCcCccEeeeeccccCccCCccccCCCCC--CEEEccCCcC--Cccc-ccccC------------
Q 040495 154 DTNYLVG-EIPSAIGSLFKLERLFIFHNHITGQLPASIGNLSSL--LAFDVRENIL--WGRI-DSLVQ------------ 215 (443)
Q Consensus 154 ~~n~l~~-~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L--~~L~l~~n~l--~~~~-~~l~~------------ 215 (443)
++|.+++ .+|..++++++|++|++++|.+++ ..+..+++| ++|++++|.+ .+.. ..+..
T Consensus 98 ~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~ 174 (520)
T 2z7x_B 98 SFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPT 174 (520)
T ss_dssp CSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCS
T ss_pred cCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccccccccccccccccceEEEEecc
Confidence 9999986 578899999999999999999885 456777788 9999999877 2222 22221
Q ss_pred -----------------------------------------------------------------------CCCCCEEEc
Q 040495 216 -----------------------------------------------------------------------LRNLRLLDI 224 (443)
Q Consensus 216 -----------------------------------------------------------------------l~~L~~L~l 224 (443)
.++|++|++
T Consensus 175 n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l 254 (520)
T 2z7x_B 175 NKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSI 254 (520)
T ss_dssp SSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEE
T ss_pred CcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEe
Confidence 126777888
Q ss_pred ccccCCCCCCccc-----cCCCCCcEEEcccCcCcccCCh-hh------------------------hcCCCCCcEEeCC
Q 040495 225 AFNHFSGMIPPPI-----FNISSLEVISLSENRFTGSLPV-DA------------------------GVNLPNLRQLSPN 274 (443)
Q Consensus 225 ~~n~~~~~~~~~l-----~~l~~L~~L~l~~n~l~~~~~~-~~------------------------~~~~~~L~~L~L~ 274 (443)
++|.+.+.+|..+ ..+++|+.+++++|.+ .+|. .+ ...+++|++|+++
T Consensus 255 ~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls 332 (520)
T 2z7x_B 255 SNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFS 332 (520)
T ss_dssp EEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECC
T ss_pred ecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCccccccchhhCCcccEEEeE
Confidence 8888888888877 6677777777766665 3441 11 0367888889999
Q ss_pred CCcCCccCCccCcCCCCCCEEecccCcCcc--ccchhhhCCCCCCEEEccCCCCcccCCCchhhHhhhcCCCCCCEEEcc
Q 040495 275 GNNFTGSIPVSLSNASRLEMIEFSRNQFSG--RVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFN 352 (443)
Q Consensus 275 ~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 352 (443)
+|++++..|..+..+++|++|++++|++++ .+|..+..+++|++|++++|.+++..+. ..+..+++|++|+++
T Consensus 333 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~-----~~~~~l~~L~~L~Ls 407 (520)
T 2z7x_B 333 NNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKK-----GDCSWTKSLLSLNMS 407 (520)
T ss_dssp SSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGG-----CSCCCCTTCCEEECC
T ss_pred CCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCccccc-----chhccCccCCEEECc
Confidence 988888788888888899999999998886 5566788888999999999888874431 346777889999999
Q ss_pred CCcCcccCChhHhhhccCCCEEeccCCcCeecCchhhhcCCCCCeEeCcCCcCcccCchh-hcCCCCCCEEEccCCcCcc
Q 040495 353 RNRFQGVLPQSMANFSSTIKQIAMGRNRISGTIPPGIRSHANLNWLTMDSNLFTGTIPPV-IGELKNLQLLDLGGNFLQG 431 (443)
Q Consensus 353 ~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~n~~~~~~p~~-~~~l~~L~~L~l~~n~l~~ 431 (443)
+|++++.+|..+. ++|+.|++++|+++ .+|..+..+++|++|++++|+++ .+|.. +..+++|++|++++|++++
T Consensus 408 ~N~l~~~~~~~l~---~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c 482 (520)
T 2z7x_B 408 SNILTDTIFRCLP---PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDC 482 (520)
T ss_dssp SSCCCGGGGGSCC---TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CCCCCcchhhhhc---ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcccEEECcCCCCcc
Confidence 9988877766542 57899999999888 78888888889999999999888 67765 8888889999999998887
Q ss_pred cCC
Q 040495 432 SIP 434 (443)
Q Consensus 432 ~~p 434 (443)
..+
T Consensus 483 ~c~ 485 (520)
T 2z7x_B 483 SCP 485 (520)
T ss_dssp CHH
T ss_pred cCC
Confidence 554
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-40 Score=337.81 Aligned_cols=351 Identities=17% Similarity=0.146 Sum_probs=270.2
Q ss_pred CcEEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCCCCCchhhcCCCccCeEEccCCCCCCCCChhhhcCCCCceeec
Q 040495 74 QRVTRLDLRNQSIGGPLSPYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSV 153 (443)
Q Consensus 74 ~~v~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l 153 (443)
.+++.|++++|.+.+..|..|.++++|++|++++|.+++..|..|+++++|++|++++|.+++..+..++++++|++|++
T Consensus 56 ~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 135 (606)
T 3vq2_A 56 SELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNV 135 (606)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEEC
T ss_pred ccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeC
Confidence 45677777777776666666677777777777777776666666777777777777777666555556666666666666
Q ss_pred cCCcccc-cCCccccCCcCccEeeeeccccCccCCcc-------------------------------------------
Q 040495 154 DTNYLVG-EIPSAIGSLFKLERLFIFHNHITGQLPAS------------------------------------------- 189 (443)
Q Consensus 154 ~~n~l~~-~~p~~l~~l~~L~~L~l~~n~l~~~~~~~------------------------------------------- 189 (443)
++|.+.+ .+|..++++++|++|++++|.+++..+..
T Consensus 136 ~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~ 215 (606)
T 3vq2_A 136 AHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNF 215 (606)
T ss_dssp CSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCC
T ss_pred CCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCCc
Confidence 6666654 45666666666666666666555433221
Q ss_pred --------------------------------------------------------------------------------
Q 040495 190 -------------------------------------------------------------------------------- 189 (443)
Q Consensus 190 -------------------------------------------------------------------------------- 189 (443)
T Consensus 216 ~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 295 (606)
T 3vq2_A 216 NSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGV 295 (606)
T ss_dssp SCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESC
T ss_pred cchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccccccCCCCCEEEecCc
Confidence
Q ss_pred -------ccCCCCCCEEEccCCcCCccc--------------------ccccCCCCCCEEEcccccCCCC--CCccccCC
Q 040495 190 -------IGNLSSLLAFDVRENILWGRI--------------------DSLVQLRNLRLLDIAFNHFSGM--IPPPIFNI 240 (443)
Q Consensus 190 -------l~~l~~L~~L~l~~n~l~~~~--------------------~~l~~l~~L~~L~l~~n~~~~~--~~~~l~~l 240 (443)
+..+++|++|++++|.+...+ ..+..+++|++|++++|.+++. .+..+..+
T Consensus 296 ~~~~l~~l~~~~~L~~L~l~~n~l~~lp~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~ 375 (606)
T 3vq2_A 296 SIKYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGT 375 (606)
T ss_dssp CCCCCCCCCTTCCCSEEEEESCCCSSCCCCCCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEEECCHHHHCC
T ss_pred cchhhhhccccccCCEEEcccccCcccccCCCCccceeeccCCcCccchhhccCCCCCEEECcCCccCCCcchhhhhccC
Confidence 112223444444444331111 1344567788888888877754 47788899
Q ss_pred CCCcEEEcccCcCcccCChhhhcCCCCCcEEeCCCCcCCccCC-ccCcCCCCCCEEecccCcCccccchhhhCCCCCCEE
Q 040495 241 SSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIP-VSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFL 319 (443)
Q Consensus 241 ~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~-~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 319 (443)
++|++|++++|.++ .+|..+. .+++|++|++++|++.+..| ..+..+++|++|++++|.+.+..|..+..+++|++|
T Consensus 376 ~~L~~L~L~~n~l~-~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 453 (606)
T 3vq2_A 376 NSLRHLDLSFNGAI-IMSANFM-GLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTL 453 (606)
T ss_dssp SCCCEEECCSCSEE-EECCCCT-TCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEE
T ss_pred CcccEeECCCCccc-cchhhcc-CCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEE
Confidence 99999999999988 5665554 79999999999999998777 688999999999999999999999999999999999
Q ss_pred EccCCCCccc-CCCchhhHhhhcCCCCCCEEEccCCcCcccCChhHhhhccCCCEEeccCCcCeecCchhhhcCCCCCeE
Q 040495 320 NMGINNLGTR-TANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNRISGTIPPGIRSHANLNWL 398 (443)
Q Consensus 320 ~l~~n~l~~~-~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L 398 (443)
++++|.+++. .+ ..+..+++|++|++++|++++..|..+..+ ++|+.|++++|++++..|..+..+++|++|
T Consensus 454 ~l~~n~l~~~~~~------~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 526 (606)
T 3vq2_A 454 KMAGNSFKDNTLS------NVFANTTNLTFLDLSKCQLEQISWGVFDTL-HRLQLLNMSHNNLLFLDSSHYNQLYSLSTL 526 (606)
T ss_dssp ECTTCEEGGGEEC------SCCTTCTTCCEEECTTSCCCEECTTTTTTC-TTCCEEECCSSCCSCEEGGGTTTCTTCCEE
T ss_pred ECCCCcCCCcchH------HhhccCCCCCEEECCCCcCCccChhhhccc-ccCCEEECCCCcCCCcCHHHccCCCcCCEE
Confidence 9999999884 45 568899999999999999998888878774 899999999999999889999999999999
Q ss_pred eCcCCcCcccCchhhcCCC-CCCEEEccCCcCcccCC
Q 040495 399 TMDSNLFTGTIPPVIGELK-NLQLLDLGGNFLQGSIP 434 (443)
Q Consensus 399 ~L~~n~~~~~~p~~~~~l~-~L~~L~l~~n~l~~~~p 434 (443)
++++|+++ .+|..+..++ +|++|++++|++.+..+
T Consensus 527 ~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~ 562 (606)
T 3vq2_A 527 DCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICE 562 (606)
T ss_dssp ECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSST
T ss_pred ECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCc
Confidence 99999999 8898888887 59999999999987655
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-40 Score=351.16 Aligned_cols=288 Identities=20% Similarity=0.197 Sum_probs=197.9
Q ss_pred CCccceeeCCCCCcEEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCCCCC-chhhcCCCccCeEEccCCCCCCCCCh
Q 040495 62 CQWTGVTCGRRHQRVTRLDLRNQSIGGPLSPYVGNLSFLRYINLANNGFLGEI-PPQIGRLNMLEGLVLSNNSFSGTIPT 140 (443)
Q Consensus 62 c~w~gv~c~~~~~~v~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~-~~~l~~l~~L~~L~l~~n~~~~~~p~ 140 (443)
|.|..|.+ ...+++.|++++|.+++..+..+.++++|++|++++|...+.+ |..|+++++|++|++++|.+++..|.
T Consensus 14 ~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~ 91 (844)
T 3j0a_A 14 CNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPD 91 (844)
T ss_dssp CCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTT
T ss_pred CCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHh
Confidence 45666665 3368999999999999988899999999999999999766665 78899999999999999999988899
Q ss_pred hhhcCCCCceeeccCCcccccCCcc--ccCCcCccEeeeeccccCccCC-ccccCCCCCCEEEccCCcCCccc-ccccCC
Q 040495 141 NLSRRSNLIELSVDTNYLVGEIPSA--IGSLFKLERLFIFHNHITGQLP-ASIGNLSSLLAFDVRENILWGRI-DSLVQL 216 (443)
Q Consensus 141 ~l~~l~~L~~L~l~~n~l~~~~p~~--l~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~-~~l~~l 216 (443)
.|.++++|++|++++|.+++..|.. ++++++|++|++++|.+++..+ ..++++++|++|++++|.+.+.. ..+..+
T Consensus 92 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l 171 (844)
T 3j0a_A 92 AFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPL 171 (844)
T ss_dssp SSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHH
T ss_pred HccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccc
Confidence 9999999999999999998766665 8899999999999999987655 57899999999999999887654 444444
Q ss_pred --CCCCEEEcccccCCCCCCccccCCCC------CcEEEcccCcCcccCChhh---------------------------
Q 040495 217 --RNLRLLDIAFNHFSGMIPPPIFNISS------LEVISLSENRFTGSLPVDA--------------------------- 261 (443)
Q Consensus 217 --~~L~~L~l~~n~~~~~~~~~l~~l~~------L~~L~l~~n~l~~~~~~~~--------------------------- 261 (443)
++|+.|+++.|.+.+..|..+..+++ |++|++++|.+++.++..+
T Consensus 172 ~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~ 251 (844)
T 3j0a_A 172 QGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHN 251 (844)
T ss_dssp HHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSS
T ss_pred cCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccc
Confidence 55666666666655555444443333 5555555554443332221
Q ss_pred ----------------------------------hcCCCCCcEEeCCCCcCCccCCccCcCCCCCCEEecccCcCccccc
Q 040495 262 ----------------------------------GVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVS 307 (443)
Q Consensus 262 ----------------------------------~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~ 307 (443)
+..+++|+.|++++|++++..|..+..+++|++|++++|.+++..+
T Consensus 252 l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 331 (844)
T 3j0a_A 252 IKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYS 331 (844)
T ss_dssp STTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCS
T ss_pred cCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCH
Confidence 2234444444444444444444444445555555555555544444
Q ss_pred hhhhCCCCCCEEEccCCCCcccCCCchhhHhhhcCCCCCCEEEccCCcCc
Q 040495 308 VDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQ 357 (443)
Q Consensus 308 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 357 (443)
..+..+++|+.|++++|.+.+..+ ..+..+++|++|++++|.++
T Consensus 332 ~~~~~l~~L~~L~L~~N~i~~~~~------~~~~~l~~L~~L~Ls~N~l~ 375 (844)
T 3j0a_A 332 SNFYGLPKVAYIDLQKNHIAIIQD------QTFKFLEKLQTLDLRDNALT 375 (844)
T ss_dssp CSCSSCTTCCEEECCSCCCCCCCS------SCSCSCCCCCEEEEETCCSC
T ss_pred HHhcCCCCCCEEECCCCCCCccCh------hhhcCCCCCCEEECCCCCCC
Confidence 445555555555555555544443 33555666666666666554
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.6e-40 Score=330.95 Aligned_cols=342 Identities=22% Similarity=0.219 Sum_probs=267.4
Q ss_pred CcEEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCCCCCchhhcCCCccCeEEccCCCCCCCCChhhhcCCCCceeec
Q 040495 74 QRVTRLDLRNQSIGGPLSPYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSV 153 (443)
Q Consensus 74 ~~v~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l 153 (443)
.+++.|++++|.+.+..+..+.++++|++|++++|.+++..|..|+++++|++|++++|.++ .+|.. .+++|++|++
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L 128 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLDL 128 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEEC
T ss_pred CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEEC
Confidence 57889999999998887788999999999999999999888888999999999999999998 66766 7899999999
Q ss_pred cCCcccc-cCCccccCCcCccEeeeeccccCccCCccccCCCCC--CEEEccCCcC--Cccc-ccccCC-----------
Q 040495 154 DTNYLVG-EIPSAIGSLFKLERLFIFHNHITGQLPASIGNLSSL--LAFDVRENIL--WGRI-DSLVQL----------- 216 (443)
Q Consensus 154 ~~n~l~~-~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L--~~L~l~~n~l--~~~~-~~l~~l----------- 216 (443)
++|++++ ..|..++++++|++|++++|.+++. .+..+++| ++|++++|.+ .+.. ..+..+
T Consensus 129 s~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~ 205 (562)
T 3a79_B 129 SFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHP 205 (562)
T ss_dssp CSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECS
T ss_pred CCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecC
Confidence 9999885 4567889999999999999998753 34455555 9999998877 3322 222111
Q ss_pred ----------------------------------------------------------------------CCCCEEEccc
Q 040495 217 ----------------------------------------------------------------------RNLRLLDIAF 226 (443)
Q Consensus 217 ----------------------------------------------------------------------~~L~~L~l~~ 226 (443)
++|++|++++
T Consensus 206 n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~ 285 (562)
T 3a79_B 206 NSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYN 285 (562)
T ss_dssp SSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEE
T ss_pred ccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEec
Confidence 1566667777
Q ss_pred ccCCCCCCccc-----cCCCC--------------------------CcEEEcccCcCcccCChhhhcCCCCCcEEeCCC
Q 040495 227 NHFSGMIPPPI-----FNISS--------------------------LEVISLSENRFTGSLPVDAGVNLPNLRQLSPNG 275 (443)
Q Consensus 227 n~~~~~~~~~l-----~~l~~--------------------------L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~ 275 (443)
|.+.+.+|..+ .+++. |++|++++|.+. ..+ ....+++|++|++++
T Consensus 286 n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~-~~~--~~~~l~~L~~L~l~~ 362 (562)
T 3a79_B 286 LTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFI-HMV--CPPSPSSFTFLNFTQ 362 (562)
T ss_dssp EEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCC-CCC--CCSSCCCCCEEECCS
T ss_pred cEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcc-ccc--CccCCCCceEEECCC
Confidence 77776666655 33332 444444444443 111 113678899999999
Q ss_pred CcCCccCCccCcCCCCCCEEecccCcCccc--cchhhhCCCCCCEEEccCCCCcccCCCchhhHhhhcCCCCCCEEEccC
Q 040495 276 NNFTGSIPVSLSNASRLEMIEFSRNQFSGR--VSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNR 353 (443)
Q Consensus 276 n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 353 (443)
|++++..|..+..+++|++|++++|++++. .|..+..+++|++|++++|.+++..+. ..+..+++|++|++++
T Consensus 363 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~-----~~~~~l~~L~~L~l~~ 437 (562)
T 3a79_B 363 NVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYD-----RTCAWAESILVLNLSS 437 (562)
T ss_dssp SCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSS-----CCCCCCTTCCEEECCS
T ss_pred CccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccCh-----hhhcCcccCCEEECCC
Confidence 999988888899999999999999999873 356688899999999999999884442 3477888999999999
Q ss_pred CcCcccCChhHhhhccCCCEEeccCCcCeecCchhhhcCCCCCeEeCcCCcCcccCchh-hcCCCCCCEEEccCCcCccc
Q 040495 354 NRFQGVLPQSMANFSSTIKQIAMGRNRISGTIPPGIRSHANLNWLTMDSNLFTGTIPPV-IGELKNLQLLDLGGNFLQGS 432 (443)
Q Consensus 354 n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~n~~~~~~p~~-~~~l~~L~~L~l~~n~l~~~ 432 (443)
|++++.+|..+. ++|+.|++++|+++ .+|..+..+++|++|++++|+++ .+|.. +..+++|++|++++|++.+.
T Consensus 438 n~l~~~~~~~l~---~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~ 512 (562)
T 3a79_B 438 NMLTGSVFRCLP---PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCT 512 (562)
T ss_dssp SCCCGGGGSSCC---TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECCSCCBCCC
T ss_pred CCCCcchhhhhc---CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEecCCCcCCC
Confidence 999877665442 57999999999998 78888888999999999999998 67776 88899999999999998876
Q ss_pred CC
Q 040495 433 IP 434 (443)
Q Consensus 433 ~p 434 (443)
.|
T Consensus 513 c~ 514 (562)
T 3a79_B 513 CP 514 (562)
T ss_dssp HH
T ss_pred cc
Confidence 55
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-39 Score=329.26 Aligned_cols=351 Identities=20% Similarity=0.233 Sum_probs=258.5
Q ss_pred CcEEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCCCCCchhhcCCCccCeEEccCCCCCCCCChhhhcCCCCceeec
Q 040495 74 QRVTRLDLRNQSIGGPLSPYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSV 153 (443)
Q Consensus 74 ~~v~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l 153 (443)
.+++.|++++|.+.+..+..|.++++|++|++++|.+++..+..|+++++|++|++++|.+++..+..++++++|++|++
T Consensus 52 ~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 131 (570)
T 2z63_A 52 PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNV 131 (570)
T ss_dssp SSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEEC
T ss_pred CCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccccEEec
Confidence 45666666666666555555666666666666666665555555666666666666666555333334555555555555
Q ss_pred cCCcccc-cCCccccCCcCccEeeeeccccCccCC---------------------------------------------
Q 040495 154 DTNYLVG-EIPSAIGSLFKLERLFIFHNHITGQLP--------------------------------------------- 187 (443)
Q Consensus 154 ~~n~l~~-~~p~~l~~l~~L~~L~l~~n~l~~~~~--------------------------------------------- 187 (443)
++|.+++ .+|..++++++|++|++++|.+++..+
T Consensus 132 ~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~ 211 (570)
T 2z63_A 132 AHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNF 211 (570)
T ss_dssp CSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCC
T ss_pred CCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhccCcceeEeccccc
Confidence 5555553 245555555555555555554432222
Q ss_pred ----------------------------------------------------------------ccccCCCCCCEEEccC
Q 040495 188 ----------------------------------------------------------------ASIGNLSSLLAFDVRE 203 (443)
Q Consensus 188 ----------------------------------------------------------------~~l~~l~~L~~L~l~~ 203 (443)
..+..+++|+++++++
T Consensus 212 ~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~ 291 (570)
T 2z63_A 212 DSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVS 291 (570)
T ss_dssp SCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEES
T ss_pred ccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecC
Confidence 2233456777777777
Q ss_pred CcCCcccccccCCCCCCEEEcccccCCCCCCcc--------------------ccCCCCCcEEEcccCcCcccC--Chhh
Q 040495 204 NILWGRIDSLVQLRNLRLLDIAFNHFSGMIPPP--------------------IFNISSLEVISLSENRFTGSL--PVDA 261 (443)
Q Consensus 204 n~l~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~--------------------l~~l~~L~~L~l~~n~l~~~~--~~~~ 261 (443)
|.+...+..+..+ +|++|++++|.+. .+|.. ...+++|++|++++|.+++.. +..+
T Consensus 292 ~~l~~l~~~~~~~-~L~~L~l~~n~~~-~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 369 (570)
T 2z63_A 292 VTIERVKDFSYNF-GWQHLELVNCKFG-QFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSD 369 (570)
T ss_dssp CEECSCCBCCSCC-CCSEEEEESCBCS-SCCBCBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSCCBEEEEEEHHH
T ss_pred ccchhhhhhhccC-CccEEeeccCccc-ccCcccccccCEEeCcCCccccccccccCCCCCEEeCcCCccCccccccccc
Confidence 7666544555555 6667777666655 22221 156788999999999887443 4555
Q ss_pred hcCCCCCcEEeCCCCcCCccCCccCcCCCCCCEEecccCcCccccc-hhhhCCCCCCEEEccCCCCcccCCCchhhHhhh
Q 040495 262 GVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVS-VDFSRLKNLSFLNMGINNLGTRTANELDFINLL 340 (443)
Q Consensus 262 ~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~ 340 (443)
. .+++|++|++++|.+.+. +..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+ ..+
T Consensus 370 ~-~~~~L~~L~l~~n~l~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~------~~~ 441 (570)
T 2z63_A 370 F-GTTSLKYLDLSFNGVITM-SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN------GIF 441 (570)
T ss_dssp H-TCSCCCEEECCSCSEEEE-EEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCT------TTT
T ss_pred c-ccCccCEEECCCCccccc-cccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccch------hhh
Confidence 5 899999999999999854 4449999999999999999998766 468899999999999999998877 668
Q ss_pred cCCCCCCEEEccCCcCc-ccCChhHhhhccCCCEEeccCCcCeecCchhhhcCCCCCeEeCcCCcCcccCchhhcCCCCC
Q 040495 341 ANCSKLERLYFNRNRFQ-GVLPQSMANFSSTIKQIAMGRNRISGTIPPGIRSHANLNWLTMDSNLFTGTIPPVIGELKNL 419 (443)
Q Consensus 341 ~~~~~L~~L~l~~n~l~-~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~n~~~~~~p~~~~~l~~L 419 (443)
.++++|++|++++|+++ +.+|..+..+ ++|+.|++++|++++..|..+..+++|++|++++|.+++..|+.+.++++|
T Consensus 442 ~~l~~L~~L~l~~n~l~~~~~p~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 520 (570)
T 2z63_A 442 NGLSSLEVLKMAGNSFQENFLPDIFTEL-RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSL 520 (570)
T ss_dssp TTCTTCCEEECTTCEEGGGEECSCCTTC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred hcCCcCcEEECcCCcCccccchhhhhcc-cCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCC
Confidence 89999999999999998 5788877774 899999999999999889999999999999999999998878889999999
Q ss_pred CEEEccCCcCcccCCc
Q 040495 420 QLLDLGGNFLQGSIPS 435 (443)
Q Consensus 420 ~~L~l~~n~l~~~~p~ 435 (443)
++|++++|++++.+|.
T Consensus 521 ~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 521 QKIWLHTNPWDCSCPR 536 (570)
T ss_dssp CEEECCSSCBCCCTTT
T ss_pred cEEEecCCcccCCCcc
Confidence 9999999999998884
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-39 Score=332.05 Aligned_cols=350 Identities=19% Similarity=0.236 Sum_probs=215.9
Q ss_pred CcEEEEEcCCCCCcccccccccCCCC--CCEEeCCCCcCCCCCchhhcCCCccCeEEccCCCCCCCCChhhhcCCCCcee
Q 040495 74 QRVTRLDLRNQSIGGPLSPYVGNLSF--LRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIEL 151 (443)
Q Consensus 74 ~~v~~L~l~~~~~~~~~~~~~~~l~~--L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L 151 (443)
..++.|+++++.+.+..+..+..++. |++|++++|.+++..+..++.+++|++|++++|.+++..|..+.++++|++|
T Consensus 222 ~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 301 (680)
T 1ziw_A 222 TSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYL 301 (680)
T ss_dssp SCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEE
T ss_pred ccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEE
Confidence 35778888888888877777777755 8888888888887777888888888888888888888888888888888888
Q ss_pred eccCCcccc-----cCCc----cccCCcCccEeeeeccccCccCCccccCCCCCCEEEccCCcCCccc---ccccC--CC
Q 040495 152 SVDTNYLVG-----EIPS----AIGSLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRI---DSLVQ--LR 217 (443)
Q Consensus 152 ~l~~n~l~~-----~~p~----~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~---~~l~~--l~ 217 (443)
++++|...+ .+|. .+..+++|++|++++|.+++..+..+.++++|++|++++|.+.... ..+.. .+
T Consensus 302 ~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~ 381 (680)
T 1ziw_A 302 NLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHS 381 (680)
T ss_dssp ECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTS
T ss_pred eccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccC
Confidence 888765442 2332 5677888888888888888777777888888888888877643222 12221 24
Q ss_pred CCCEEEcccccCCCCCCccccCCCCCcEEEcccCcCcccCChhhhcCCCCCcEEeCCCCcCCccCCccCcCCCCCCEEec
Q 040495 218 NLRLLDIAFNHFSGMIPPPIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEF 297 (443)
Q Consensus 218 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l 297 (443)
+|+.|++++|.+.+..|..+..+++|++|++++|.+++.+|...+..+++|++|++++|++.+..+..+..+++|+.|++
T Consensus 382 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l 461 (680)
T 1ziw_A 382 PLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLML 461 (680)
T ss_dssp CCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEEC
T ss_pred cCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchh
Confidence 67777777777776666667777777777777777766666444446667777777776665554555555555555555
Q ss_pred ccCcCc--cccchhhhCCCCCCEEEccCCCCcccCCCchhhHhhhcCCCCCCEEEccCCcCcccCCh--------hHhhh
Q 040495 298 SRNQFS--GRVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQ--------SMANF 367 (443)
Q Consensus 298 ~~n~l~--~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~--------~~~~~ 367 (443)
++|.+. +..|..+..+++|+.|++++|.+++..+ ..+.++++|++|++++|++++..+. .+..
T Consensus 462 ~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~- 534 (680)
T 1ziw_A 462 RRVALKNVDSSPSPFQPLRNLTILDLSNNNIANIND------DMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKG- 534 (680)
T ss_dssp TTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCT------TTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTT-
T ss_pred ccccccccccCCcccccCCCCCEEECCCCCCCcCCh------hhhccccccCEEeCCCCCccccchhhccCCcchhhcC-
Confidence 555544 3344445555555555555555554443 3344444455555555544421110 1122
Q ss_pred ccCCCEEeccCCcCeecCc-hhhhcCCCCCeEeCcCCcCcccCchhhcCCCCCCEEEccCCcCcc
Q 040495 368 SSTIKQIAMGRNRISGTIP-PGIRSHANLNWLTMDSNLFTGTIPPVIGELKNLQLLDLGGNFLQG 431 (443)
Q Consensus 368 ~~~L~~L~L~~n~l~~~~p-~~l~~~~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~ 431 (443)
.++|+.|++++|+++ .+| ..+..+++|+.|++++|.+++..+..+..+++|++|++++|++++
T Consensus 535 l~~L~~L~L~~N~l~-~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ 598 (680)
T 1ziw_A 535 LSHLHILNLESNGFD-EIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITS 598 (680)
T ss_dssp CTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCB
T ss_pred CCCCCEEECCCCCCC-CCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCc
Confidence 244444444444444 222 234444444444444444442222233444444444444444443
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-39 Score=317.41 Aligned_cols=339 Identities=18% Similarity=0.235 Sum_probs=291.9
Q ss_pred CCCCEEeCCCCcCCCCCchhhcCCCccCeEEccCCCCCCCC-ChhhhcCCCCceeeccCCcccccCCccccCCcCccEee
Q 040495 98 SFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTI-PTNLSRRSNLIELSVDTNYLVGEIPSAIGSLFKLERLF 176 (443)
Q Consensus 98 ~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~-p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ 176 (443)
++|++|++++|.+++..|..++++++|++|++++|.+.+.+ +..|.++++|++|++++|.+++..|..++++++|++|+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 109 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT 109 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence 78999999999999888999999999999999999997555 56789999999999999999988899999999999999
Q ss_pred eeccccCccCCcc--ccCCCCCCEEEccCCcCCccc-cc-ccCCCCCCEEEcccccCCCCCCccccCC--CCCcEEEccc
Q 040495 177 IFHNHITGQLPAS--IGNLSSLLAFDVRENILWGRI-DS-LVQLRNLRLLDIAFNHFSGMIPPPIFNI--SSLEVISLSE 250 (443)
Q Consensus 177 l~~n~l~~~~~~~--l~~l~~L~~L~l~~n~l~~~~-~~-l~~l~~L~~L~l~~n~~~~~~~~~l~~l--~~L~~L~l~~ 250 (443)
+++|.+++..+.. +..+++|++|++++|.+.+.. .. +..+++|++|++++|.+.+..+..+..+ .+|+.|++++
T Consensus 110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~ 189 (455)
T 3v47_A 110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSS 189 (455)
T ss_dssp CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTT
T ss_pred CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccccccc
Confidence 9999998755554 889999999999999998876 33 8899999999999999998888888765 7899999999
Q ss_pred CcCcccCChhh-------hcCCCCCcEEeCCCCcCCccCCccCcCC---CCCCEEecccCcCcccc----------chhh
Q 040495 251 NRFTGSLPVDA-------GVNLPNLRQLSPNGNNFTGSIPVSLSNA---SRLEMIEFSRNQFSGRV----------SVDF 310 (443)
Q Consensus 251 n~l~~~~~~~~-------~~~~~~L~~L~L~~n~l~~~~~~~l~~~---~~L~~L~l~~n~l~~~~----------~~~~ 310 (443)
|.+.+..+..+ ...+++|++|++++|++++..|..+... ++|+.|++++|...+.. +..+
T Consensus 190 n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 269 (455)
T 3v47_A 190 ITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTF 269 (455)
T ss_dssp CBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTT
T ss_pred CcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCccccc
Confidence 99984332211 1145789999999999998887766544 89999999998655421 1222
Q ss_pred h--CCCCCCEEEccCCCCcccCCCchhhHhhhcCCCCCCEEEccCCcCcccCChhHhhhccCCCEEeccCCcCeecCchh
Q 040495 311 S--RLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNRISGTIPPG 388 (443)
Q Consensus 311 ~--~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~ 388 (443)
. ..++|+.|++++|.+++..+ ..+..+++|++|++++|++++..|..+..+ ++|+.|++++|++++..|..
T Consensus 270 ~~~~~~~L~~L~l~~n~l~~~~~------~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~ 342 (455)
T 3v47_A 270 KGLEASGVKTCDLSKSKIFALLK------SVFSHFTDLEQLTLAQNEINKIDDNAFWGL-THLLKLNLSQNFLGSIDSRM 342 (455)
T ss_dssp GGGTTSCCCEEECCSSCCCEECT------TTTTTCTTCCEEECTTSCCCEECTTTTTTC-TTCCEEECCSSCCCEECGGG
T ss_pred ccccccCceEEEecCccccccch------hhcccCCCCCEEECCCCcccccChhHhcCc-ccCCEEECCCCccCCcChhH
Confidence 2 23689999999999999887 668899999999999999998778777774 89999999999999888999
Q ss_pred hhcCCCCCeEeCcCCcCcccCchhhcCCCCCCEEEccCCcCcccCCccccCCCCC
Q 040495 389 IRSHANLNWLTMDSNLFTGTIPPVIGELKNLQLLDLGGNFLQGSIPSSLGNLTLL 443 (443)
Q Consensus 389 l~~~~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L 443 (443)
+..+++|++|++++|.+++..|..+..+++|++|++++|++++..+..+.++++|
T Consensus 343 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 397 (455)
T 3v47_A 343 FENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSL 397 (455)
T ss_dssp GTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred hcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcc
Confidence 9999999999999999998889999999999999999999997555566776654
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-38 Score=321.92 Aligned_cols=343 Identities=20% Similarity=0.220 Sum_probs=281.4
Q ss_pred CcEEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCCCCCchhhcCCCccCeEEccCCCCCC-CCChhhhcCCCCceee
Q 040495 74 QRVTRLDLRNQSIGGPLSPYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSG-TIPTNLSRRSNLIELS 152 (443)
Q Consensus 74 ~~v~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~-~~p~~l~~l~~L~~L~ 152 (443)
.+++.|++++|.+.+..+..+..+++|++|++++|.+++..+..++++++|++|++++|.+++ ..|..+.++++|++|+
T Consensus 50 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~ 129 (549)
T 2z81_A 50 ANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLR 129 (549)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEE
T ss_pred CcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEE
Confidence 679999999999999888899999999999999999998888889999999999999999986 4577889999999999
Q ss_pred ccCCcccccCC-ccccCCcCccEeeeeccccCccCCccccC------------------------CCCCCEEEccCCcCC
Q 040495 153 VDTNYLVGEIP-SAIGSLFKLERLFIFHNHITGQLPASIGN------------------------LSSLLAFDVRENILW 207 (443)
Q Consensus 153 l~~n~l~~~~p-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~------------------------l~~L~~L~l~~n~l~ 207 (443)
+++|.+.+.+| ..+..+++|++|++++|.+++..|..+.. +++|++|++++|.+.
T Consensus 130 L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~ 209 (549)
T 2z81_A 130 IGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLA 209 (549)
T ss_dssp EEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCT
T ss_pred CCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccc
Confidence 99998554555 57889999999999999998777766543 567777777777666
Q ss_pred ccc----ccc----------------------------cC----------------------------------------
Q 040495 208 GRI----DSL----------------------------VQ---------------------------------------- 215 (443)
Q Consensus 208 ~~~----~~l----------------------------~~---------------------------------------- 215 (443)
+.. ... ..
T Consensus 210 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~ 289 (549)
T 2z81_A 210 RFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIR 289 (549)
T ss_dssp TCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEE
T ss_pred cccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhccccccccc
Confidence 531 000 00
Q ss_pred -------------------CCCCCEEEcccccCCCCCCccc-cCCCCCcEEEcccCcCcccCChh--hhcCCCCCcEEeC
Q 040495 216 -------------------LRNLRLLDIAFNHFSGMIPPPI-FNISSLEVISLSENRFTGSLPVD--AGVNLPNLRQLSP 273 (443)
Q Consensus 216 -------------------l~~L~~L~l~~n~~~~~~~~~l-~~l~~L~~L~l~~n~l~~~~~~~--~~~~~~~L~~L~L 273 (443)
.++|+.|++++|.+. .+|..+ ..+++|++|++++|.+++.+|.. ....+++|++|++
T Consensus 290 ~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~L 368 (549)
T 2z81_A 290 RLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVL 368 (549)
T ss_dssp SCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEEC
T ss_pred ccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEc
Confidence 134555555555554 456555 47999999999999999776543 1237899999999
Q ss_pred CCCcCCccCC--ccCcCCCCCCEEecccCcCccccchhhhCCCCCCEEEccCCCCcccCCCchhhHhhhcCCCCCCEEEc
Q 040495 274 NGNNFTGSIP--VSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYF 351 (443)
Q Consensus 274 ~~n~l~~~~~--~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~L~~L~l 351 (443)
++|++++..+ ..+..+++|++|++++|+++ .+|..+..+++|++|++++|.++..... + .++|++|++
T Consensus 369 s~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~l~~~-------~--~~~L~~L~L 438 (549)
T 2z81_A 369 SQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRVVKTC-------I--PQTLEVLDV 438 (549)
T ss_dssp TTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSCCCTT-------S--CTTCSEEEC
T ss_pred cCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCcccccch-------h--cCCceEEEC
Confidence 9999985432 45889999999999999999 5777888999999999999998865431 1 268999999
Q ss_pred cCCcCcccCChhHhhhccCCCEEeccCCcCeecCchhhhcCCCCCeEeCcCCcCcccCchhhcCCCCCCEEEccCCcCcc
Q 040495 352 NRNRFQGVLPQSMANFSSTIKQIAMGRNRISGTIPPGIRSHANLNWLTMDSNLFTGTIPPVIGELKNLQLLDLGGNFLQG 431 (443)
Q Consensus 352 ~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~ 431 (443)
++|++++.+ .. .++|+.|++++|+++ .+|. ...+++|++|++++|++++..|+.+..+++|++|++++|++.+
T Consensus 439 s~N~l~~~~----~~-l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 511 (549)
T 2z81_A 439 SNNNLDSFS----LF-LPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 511 (549)
T ss_dssp CSSCCSCCC----CC-CTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCC
T ss_pred CCCChhhhc----cc-CChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccC
Confidence 999999643 23 478999999999999 7776 5778999999999999998888889999999999999999998
Q ss_pred cCC
Q 040495 432 SIP 434 (443)
Q Consensus 432 ~~p 434 (443)
.+|
T Consensus 512 ~~~ 514 (549)
T 2z81_A 512 SCP 514 (549)
T ss_dssp CHH
T ss_pred CCc
Confidence 877
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-38 Score=337.12 Aligned_cols=364 Identities=20% Similarity=0.207 Sum_probs=213.2
Q ss_pred CcEEEEEcCCCCCcccc-cccccCCCCCCEEeCCCCcCCCCCchhhcCCCccCeEEccCCCCCCCCChh--hhcCCCCce
Q 040495 74 QRVTRLDLRNQSIGGPL-SPYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTN--LSRRSNLIE 150 (443)
Q Consensus 74 ~~v~~L~l~~~~~~~~~-~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~--l~~l~~L~~ 150 (443)
.+++.|++++|...+.+ |..|.++++|++|+|++|.+.+..|..|+++++|++|++++|.+++..|.. +.++++|++
T Consensus 48 ~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~ 127 (844)
T 3j0a_A 48 EQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTR 127 (844)
T ss_dssp CSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCE
T ss_pred ccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCE
Confidence 34555555555444433 445555555555555555555555555555555555555555555444433 555555555
Q ss_pred eeccCCcccccCC-ccccCCcCccEeeeeccccCccCCcc--------------------------ccCCCC------CC
Q 040495 151 LSVDTNYLVGEIP-SAIGSLFKLERLFIFHNHITGQLPAS--------------------------IGNLSS------LL 197 (443)
Q Consensus 151 L~l~~n~l~~~~p-~~l~~l~~L~~L~l~~n~l~~~~~~~--------------------------l~~l~~------L~ 197 (443)
|++++|.+++..+ ..++++++|++|++++|.+++..+.. +..+++ |+
T Consensus 128 L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~ 207 (844)
T 3j0a_A 128 LDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLE 207 (844)
T ss_dssp EEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBS
T ss_pred EECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCcee
Confidence 5555555554332 34555555555555555554443333 333332 66
Q ss_pred EEEccCCcCCccc-cc------------------------------------ccC--CCCCCEEEcccccCCCCCCcccc
Q 040495 198 AFDVRENILWGRI-DS------------------------------------LVQ--LRNLRLLDIAFNHFSGMIPPPIF 238 (443)
Q Consensus 198 ~L~l~~n~l~~~~-~~------------------------------------l~~--l~~L~~L~l~~n~~~~~~~~~l~ 238 (443)
+|++++|.+.+.. .. +.. .++|+.|++++|.+.+..+..+.
T Consensus 208 ~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~ 287 (844)
T 3j0a_A 208 ILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFE 287 (844)
T ss_dssp EEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSS
T ss_pred EEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhh
Confidence 7777666443221 10 111 25678888888887777777778
Q ss_pred CCCCCcEEEcccCcCcccCChhhhcCCCCCcEEeCCCCcCCccCCccCcCCCCCCEEecccCcCccccchhhhCCCCCCE
Q 040495 239 NISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSF 318 (443)
Q Consensus 239 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 318 (443)
.+++|++|++++|.+++..|..+. .+++|++|++++|.+++..|..+..+++|+.|++++|++.+..+..|..+++|+.
T Consensus 288 ~l~~L~~L~L~~n~i~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~ 366 (844)
T 3j0a_A 288 TLKDLKVLNLAYNKINKIADEAFY-GLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQT 366 (844)
T ss_dssp SCCCCCEEEEESCCCCEECTTTTT-TCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCE
T ss_pred cCCCCCEEECCCCcCCCCChHHhc-CCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCE
Confidence 888888888888888755454443 7788888888888888777778888888888888888888777777788888888
Q ss_pred EEccCCCCcccCCC----------------------------------chhhHhhhcCCCCCCEEEccCCcCcccCChhH
Q 040495 319 LNMGINNLGTRTAN----------------------------------ELDFINLLANCSKLERLYFNRNRFQGVLPQSM 364 (443)
Q Consensus 319 L~l~~n~l~~~~~~----------------------------------~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~ 364 (443)
|++++|.+++.... .+.....+..+++|++|++++|++++..+...
T Consensus 367 L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 446 (844)
T 3j0a_A 367 LDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQT 446 (844)
T ss_dssp EEEETCCSCCCSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSS
T ss_pred EECCCCCCCcccCCCCcchhccCCCCcccccccccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccc
Confidence 88888877653210 00011224466777777777777764322211
Q ss_pred hhhc-----------------------------cCCCEEeccCCcCeecCchhhhcCCCCCeEeCcCCcCcccCchhhcC
Q 040495 365 ANFS-----------------------------STIKQIAMGRNRISGTIPPGIRSHANLNWLTMDSNLFTGTIPPVIGE 415 (443)
Q Consensus 365 ~~~~-----------------------------~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~n~~~~~~p~~~~~ 415 (443)
.... ++|+.|+|++|++++..|..+..+++|+.|+|++|++++..|..+.
T Consensus 447 ~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~- 525 (844)
T 3j0a_A 447 PSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP- 525 (844)
T ss_dssp SCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC-
T ss_pred cccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh-
Confidence 1112 4445555555555544444455555555555555555533333332
Q ss_pred CCCCCEEEccCCcCcccCCccccCC
Q 040495 416 LKNLQLLDLGGNFLQGSIPSSLGNL 440 (443)
Q Consensus 416 l~~L~~L~l~~n~l~~~~p~~~~~l 440 (443)
++|+.|++++|++++..|+.|.++
T Consensus 526 -~~L~~L~Ls~N~l~~~~~~~~~~L 549 (844)
T 3j0a_A 526 -ANLEILDISRNQLLAPNPDVFVSL 549 (844)
T ss_dssp -SCCCEEEEEEECCCCCCSCCCSSC
T ss_pred -ccccEEECCCCcCCCCChhHhCCc
Confidence 455566666666665555555444
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-37 Score=312.47 Aligned_cols=349 Identities=19% Similarity=0.235 Sum_probs=286.3
Q ss_pred EEEEcCCCCCcccccccccCCCCCCEEeCCCCcCCCCCchhhcCCCccCeEEccCCCCCCCCChhhhcCCCCceeeccCC
Q 040495 77 TRLDLRNQSIGGPLSPYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSVDTN 156 (443)
Q Consensus 77 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n 156 (443)
+.+++++++++. +|..+. ++|++|++++|.+++..|..+.++++|++|++++|.+++..|..|.++++|++|++++|
T Consensus 3 ~~l~ls~n~l~~-ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 79 (520)
T 2z7x_B 3 FLVDRSKNGLIH-VPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN 79 (520)
T ss_dssp CEEECTTSCCSS-CCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred ceEecCCCCccc-cccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence 479999999985 666555 89999999999999888889999999999999999999888999999999999999999
Q ss_pred cccccCCccccCCcCccEeeeeccccCc-cCCccccCCCCCCEEEccCCcCCcccccccCCCCC--CEEEcccccC--CC
Q 040495 157 YLVGEIPSAIGSLFKLERLFIFHNHITG-QLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNL--RLLDIAFNHF--SG 231 (443)
Q Consensus 157 ~l~~~~p~~l~~l~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~l~~l~~L--~~L~l~~n~~--~~ 231 (443)
+++ .+|.. .+++|++|++++|.+++ .+|..++++++|++|++++|.+.+ ..+..+++| ++|++++|.+ .+
T Consensus 80 ~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~l~~~~ 154 (520)
T 2z7x_B 80 KLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGETYGEK 154 (520)
T ss_dssp CCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECTTTTSS
T ss_pred cee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch--hhccccccceeeEEEeecccccccc
Confidence 998 67766 89999999999999987 578899999999999999998876 455667777 9999999999 66
Q ss_pred CCCccccCCC----------------------------------------------------------------------
Q 040495 232 MIPPPIFNIS---------------------------------------------------------------------- 241 (443)
Q Consensus 232 ~~~~~l~~l~---------------------------------------------------------------------- 241 (443)
..|..+..+.
T Consensus 155 ~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~ 234 (520)
T 2z7x_B 155 EDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTW 234 (520)
T ss_dssp CCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEH
T ss_pred cccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCH
Confidence 6666655532
Q ss_pred -------------CCcEEEcccCcCcccCChhhh----cCCCCCcEEeCCCCcCCccCC---------------------
Q 040495 242 -------------SLEVISLSENRFTGSLPVDAG----VNLPNLRQLSPNGNNFTGSIP--------------------- 283 (443)
Q Consensus 242 -------------~L~~L~l~~n~l~~~~~~~~~----~~~~~L~~L~L~~n~l~~~~~--------------------- 283 (443)
+|++|++++|.++|.+|..++ ..+++|+.+++++|.+ .+|
T Consensus 235 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n 312 (520)
T 2z7x_B 235 NSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGT 312 (520)
T ss_dssp HHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESS
T ss_pred HHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCC
Confidence 566677777777767776652 2455555555544444 122
Q ss_pred ----cc-CcCCCCCCEEecccCcCccccchhhhCCCCCCEEEccCCCCcccCCCchhhHhhhcCCCCCCEEEccCCcCcc
Q 040495 284 ----VS-LSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQG 358 (443)
Q Consensus 284 ----~~-l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 358 (443)
.. ...+++|++|++++|++++..|..+..+++|++|++++|.+++... .+..+..+++|++|++++|++++
T Consensus 313 ~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~----~~~~~~~l~~L~~L~Ls~N~l~~ 388 (520)
T 2z7x_B 313 RMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSK----IAEMTTQMKSLQQLDISQNSVSY 388 (520)
T ss_dssp CCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHH----HHHHHTTCTTCCEEECCSSCCBC
T ss_pred ccccccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCcccc----chHHHhhCCCCCEEECCCCcCCc
Confidence 00 1678899999999999999888889999999999999999986321 22568899999999999999997
Q ss_pred cCChhHhhhccCCCEEeccCCcCeecCchhhhcCCCCCeEeCcCCcCcccCchhhcCCCCCCEEEccCCcCcccCCcc-c
Q 040495 359 VLPQSMANFSSTIKQIAMGRNRISGTIPPGIRSHANLNWLTMDSNLFTGTIPPVIGELKNLQLLDLGGNFLQGSIPSS-L 437 (443)
Q Consensus 359 ~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~-~ 437 (443)
.+|...+...++|+.|++++|++++.+|..+. ++|++|++++|+++ .+|..+..+++|++|++++|+++ .+|.. +
T Consensus 389 ~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~ 464 (520)
T 2z7x_B 389 DEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIF 464 (520)
T ss_dssp CGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTTT
T ss_pred ccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHHHh
Confidence 68876444358999999999999988877664 78999999999999 89998889999999999999999 67876 7
Q ss_pred cCCCCC
Q 040495 438 GNLTLL 443 (443)
Q Consensus 438 ~~l~~L 443 (443)
.++++|
T Consensus 465 ~~l~~L 470 (520)
T 2z7x_B 465 DRLTSL 470 (520)
T ss_dssp TTCTTC
T ss_pred ccCCcc
Confidence 766654
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-37 Score=297.45 Aligned_cols=310 Identities=17% Similarity=0.171 Sum_probs=205.3
Q ss_pred CCCCCCEEeCCCCcCCCCCchhhcCCCccCeEEccCCCCCCCCChhhhcCCCCceeeccCCcccccCCccccCCcCccEe
Q 040495 96 NLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSVDTNYLVGEIPSAIGSLFKLERL 175 (443)
Q Consensus 96 ~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L 175 (443)
.++++++|++++|.++...+..+.++++|++|++++|.+++..+..+..+++|++|++++|.+++..|..++.+++|++|
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 45677777777777664444445667777777777777775555667777777777777777776556666777777777
Q ss_pred eeeccccCccCCccccCCCCCCEEEccCCcCCccc-ccccCCCCCCEEEcccccCCCCCCccccCCCCCcEEEcccCcCc
Q 040495 176 FIFHNHITGQLPASIGNLSSLLAFDVRENILWGRI-DSLVQLRNLRLLDIAFNHFSGMIPPPIFNISSLEVISLSENRFT 254 (443)
Q Consensus 176 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~ 254 (443)
++++|.++...+..+.++++|++|++++|.+.+.. ..+..+++|++|++++|.+++. .+..+++|+++++++|.++
T Consensus 123 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~ 199 (390)
T 3o6n_A 123 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLS 199 (390)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCS
T ss_pred ECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeeccccccc
Confidence 77777777333333566777777777777766655 4566677777777777776643 2445667777777777665
Q ss_pred ccCChhhhcCCCCCcEEeCCCCcCCccCCccCcCCCCCCEEecccCcCccccchhhhCCCCCCEEEccCCCCcccCCCch
Q 040495 255 GSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANEL 334 (443)
Q Consensus 255 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 334 (443)
.++ ..++|++|++++|.+... |.. ..++|+.|++++|++++. ..+..+++|++|++++|.+++..+
T Consensus 200 -~~~-----~~~~L~~L~l~~n~l~~~-~~~--~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~--- 265 (390)
T 3o6n_A 200 -TLA-----IPIAVEELDASHNSINVV-RGP--VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMY--- 265 (390)
T ss_dssp -EEE-----CCSSCSEEECCSSCCCEE-ECC--CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEES---
T ss_pred -ccC-----CCCcceEEECCCCeeeec-ccc--ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcCh---
Confidence 222 345677777777777633 322 245677777777777653 456677777777777777776655
Q ss_pred hhHhhhcCCCCCCEEEccCCcCcccCChhHhhhccCCCEEeccCCcCeecCchhhhcCCCCCeEeCcCCcCcccCchhhc
Q 040495 335 DFINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNRISGTIPPGIRSHANLNWLTMDSNLFTGTIPPVIG 414 (443)
Q Consensus 335 ~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~n~~~~~~p~~~~ 414 (443)
..+..+++|++|++++|++++ +|..+.. .++|+.|++++|+++ .+|..+..+++|++|++++|.++ .++ +.
T Consensus 266 ---~~~~~l~~L~~L~L~~n~l~~-~~~~~~~-l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~-~~~--~~ 336 (390)
T 3o6n_A 266 ---HPFVKMQRLERLYISNNRLVA-LNLYGQP-IPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLK--LS 336 (390)
T ss_dssp ---GGGTTCSSCCEEECCSSCCCE-EECSSSC-CTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCC-CCC--CC
T ss_pred ---hHccccccCCEEECCCCcCcc-cCcccCC-CCCCCEEECCCCcce-ecCccccccCcCCEEECCCCccc-eeC--ch
Confidence 556677777777777777763 4444433 367777777777776 56666677777777777777776 333 55
Q ss_pred CCCCCCEEEccCCcCcc
Q 040495 415 ELKNLQLLDLGGNFLQG 431 (443)
Q Consensus 415 ~l~~L~~L~l~~n~l~~ 431 (443)
.+++|++|++++|++.+
T Consensus 337 ~~~~L~~L~l~~N~~~~ 353 (390)
T 3o6n_A 337 THHTLKNLTLSHNDWDC 353 (390)
T ss_dssp TTCCCSEEECCSSCEEH
T ss_pred hhccCCEEEcCCCCccc
Confidence 66777777777777754
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-37 Score=304.98 Aligned_cols=319 Identities=18% Similarity=0.178 Sum_probs=259.1
Q ss_pred EEEcCCCCCcccccccccCCCCCCEEeCCCCcCCCCCchhhcCCCccCeEEccCCCCCCCCChhhhcCCCCceeeccCCc
Q 040495 78 RLDLRNQSIGGPLSPYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSVDTNY 157 (443)
Q Consensus 78 ~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~ 157 (443)
.++.++++++. +|..+ .+++++|++++|.+++..+..|.++++|++|++++|.+++..|..|.++++|++|++++|.
T Consensus 15 ~v~c~~~~l~~-ip~~~--~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~ 91 (477)
T 2id5_A 15 AVLCHRKRFVA-VPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR 91 (477)
T ss_dssp EEECCSCCCSS-CCSCC--CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EEEeCCCCcCc-CCCCC--CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc
Confidence 34444555543 44433 3589999999999998888899999999999999999998889999999999999999999
Q ss_pred ccccCCccccCCcCccEeeeeccccCccCCccccCCCCCCEEEccCCcCCccc-ccccCCCCCCEEEcccccCCCCCCcc
Q 040495 158 LVGEIPSAIGSLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRI-DSLVQLRNLRLLDIAFNHFSGMIPPP 236 (443)
Q Consensus 158 l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~ 236 (443)
+++..+..+.++++|++|++++|.+++..+..+..+++|++|++++|.+.+.. ..+..+++|++|++++|.+++..+..
T Consensus 92 l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 171 (477)
T 2id5_A 92 LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEA 171 (477)
T ss_dssp CCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHH
T ss_pred CCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhH
Confidence 98555556889999999999999999888888899999999999999887766 67888889999999998888766667
Q ss_pred ccCCCCCcEEEcccCcCcccCChhhhcCCCCCcEEeCCCCcCCccCCccCcCCCCCCEEecccCcCccccchhhhCCCCC
Q 040495 237 IFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNL 316 (443)
Q Consensus 237 l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L 316 (443)
+..+++|+.|++++|.+.+ ++...+..+++|++|++++|...+.+|.......+|++|++++|++++..+..+..+++|
T Consensus 172 l~~l~~L~~L~l~~n~i~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L 250 (477)
T 2id5_A 172 LSHLHGLIVLRLRHLNINA-IRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYL 250 (477)
T ss_dssp HTTCTTCCEEEEESCCCCE-ECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTC
T ss_pred hcccCCCcEEeCCCCcCcE-eChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCcccc
Confidence 8888888999988888874 444444478888888888887777777766666788888888888886655678888888
Q ss_pred CEEEccCCCCcccCCCchhhHhhhcCCCCCCEEEccCCcCcccCChhHhhhccCCCEEeccCCcCeecCchhhhcCCCCC
Q 040495 317 SFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNRISGTIPPGIRSHANLN 396 (443)
Q Consensus 317 ~~L~l~~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~ 396 (443)
+.|++++|.+++..+ ..+..+++|++|++++|++++..|..+..+ ++|+.|++++|++++..+..+..+++|+
T Consensus 251 ~~L~Ls~n~l~~~~~------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 323 (477)
T 2id5_A 251 RFLNLSYNPISTIEG------SMLHELLRLQEIQLVGGQLAVVEPYAFRGL-NYLRVLNVSGNQLTTLEESVFHSVGNLE 323 (477)
T ss_dssp CEEECCSSCCCEECT------TSCTTCTTCCEEECCSSCCSEECTTTBTTC-TTCCEEECCSSCCSCCCGGGBSCGGGCC
T ss_pred CeeECCCCcCCccCh------hhccccccCCEEECCCCccceECHHHhcCc-ccCCEEECCCCcCceeCHhHcCCCcccC
Confidence 888888888887766 557788888888888888887767766664 7888888888888866666677788888
Q ss_pred eEeCcCCcCcc
Q 040495 397 WLTMDSNLFTG 407 (443)
Q Consensus 397 ~L~L~~n~~~~ 407 (443)
+|++++|++..
T Consensus 324 ~L~l~~N~l~c 334 (477)
T 2id5_A 324 TLILDSNPLAC 334 (477)
T ss_dssp EEECCSSCEEC
T ss_pred EEEccCCCccC
Confidence 88888888774
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-36 Score=299.39 Aligned_cols=322 Identities=24% Similarity=0.376 Sum_probs=243.3
Q ss_pred CcEEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCCCCCchhhcCCCccCeEEccCCCCCCCCChhhhcCCCCceeec
Q 040495 74 QRVTRLDLRNQSIGGPLSPYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSV 153 (443)
Q Consensus 74 ~~v~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l 153 (443)
.+++.|+++++.+.+..+ +..+++|++|++++|.+.+..+ ++++++|++|++++|.+++. +. +..+++|++|++
T Consensus 68 ~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~-~~-~~~l~~L~~L~l 141 (466)
T 1o6v_A 68 NNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDI-DP-LKNLTNLNRLEL 141 (466)
T ss_dssp TTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC-GG-GTTCTTCSEEEE
T ss_pred cCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCCCC-hH-HcCCCCCCEEEC
Confidence 456777777777665433 6677777777777777664333 67777777777777777643 32 667777777777
Q ss_pred cCCcccccCCccccCCcCccEeeeeccccCccCCccccCCCCCCEEEccCCcCCcccccccCCCCCCEEEcccccCCCCC
Q 040495 154 DTNYLVGEIPSAIGSLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLRLLDIAFNHFSGMI 233 (443)
Q Consensus 154 ~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~~~~~~ 233 (443)
++|.+.+ ++ .++.+++|++|+++ +.+.+. ..+.++++|++|++++|.+... ..+..+++|++|++++|.+.+..
T Consensus 142 ~~n~l~~-~~-~~~~l~~L~~L~l~-~~~~~~--~~~~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~l~~n~l~~~~ 215 (466)
T 1o6v_A 142 SSNTISD-IS-ALSGLTSLQQLSFG-NQVTDL--KPLANLTTLERLDISSNKVSDI-SVLAKLTNLESLIATNNQISDIT 215 (466)
T ss_dssp EEEEECC-CG-GGTTCTTCSEEEEE-ESCCCC--GGGTTCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCG
T ss_pred CCCccCC-Ch-hhccCCcccEeecC-CcccCc--hhhccCCCCCEEECcCCcCCCC-hhhccCCCCCEEEecCCcccccc
Confidence 7777653 33 36667777777775 334322 2377888888888888877654 45777888888999888887654
Q ss_pred CccccCCCCCcEEEcccCcCcccCChhhhcCCCCCcEEeCCCCcCCccCCccCcCCCCCCEEecccCcCccccchhhhCC
Q 040495 234 PPPIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRL 313 (443)
Q Consensus 234 ~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l 313 (443)
+ +..+++|++|++++|.++ .++ .+. .+++|++|++++|.+++..+ +..+++|++|++++|.+++..+ +..+
T Consensus 216 ~--~~~l~~L~~L~l~~n~l~-~~~-~l~-~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l 286 (466)
T 1o6v_A 216 P--LGILTNLDELSLNGNQLK-DIG-TLA-SLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGL 286 (466)
T ss_dssp G--GGGCTTCCEEECCSSCCC-CCG-GGG-GCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTC
T ss_pred c--ccccCCCCEEECCCCCcc-cch-hhh-cCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCC
Confidence 4 677888999999988887 343 233 68889999999998886544 7888899999999999887544 7888
Q ss_pred CCCCEEEccCCCCcccCCCchhhHhhhcCCCCCCEEEccCCcCcccCChhHhhhccCCCEEeccCCcCeecCchhhhcCC
Q 040495 314 KNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNRISGTIPPGIRSHA 393 (443)
Q Consensus 314 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~ 393 (443)
++|+.|++++|.+++..+ +..+++|++|++++|++++..| +.. +++|+.|++++|++++. ..+..++
T Consensus 287 ~~L~~L~L~~n~l~~~~~--------~~~l~~L~~L~L~~n~l~~~~~--~~~-l~~L~~L~l~~n~l~~~--~~l~~l~ 353 (466)
T 1o6v_A 287 TALTNLELNENQLEDISP--------ISNLKNLTYLTLYFNNISDISP--VSS-LTKLQRLFFYNNKVSDV--SSLANLT 353 (466)
T ss_dssp TTCSEEECCSSCCSCCGG--------GGGCTTCSEEECCSSCCSCCGG--GGG-CTTCCEEECCSSCCCCC--GGGTTCT
T ss_pred CccCeEEcCCCcccCchh--------hcCCCCCCEEECcCCcCCCchh--hcc-CccCCEeECCCCccCCc--hhhccCC
Confidence 999999999998887543 6788999999999999986655 444 48899999999999864 4688899
Q ss_pred CCCeEeCcCCcCcccCchhhcCCCCCCEEEccCCcCcc
Q 040495 394 NLNWLTMDSNLFTGTIPPVIGELKNLQLLDLGGNFLQG 431 (443)
Q Consensus 394 ~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~ 431 (443)
+|++|++++|++++..| +..+++|++|++++|++++
T Consensus 354 ~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 354 NINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp TCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred CCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence 99999999999987776 8889999999999998886
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-37 Score=310.96 Aligned_cols=350 Identities=20% Similarity=0.245 Sum_probs=284.7
Q ss_pred EEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCCCCCchhhcCCCccCeEEccCCCCCCCCChhhhcCCCCceeeccC
Q 040495 76 VTRLDLRNQSIGGPLSPYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSVDT 155 (443)
Q Consensus 76 v~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~ 155 (443)
.+.++++++++++ +|..+. +++++|++++|.+++..+..++++++|++|++++|.+++..|..|.++++|++|++++
T Consensus 33 ~~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 109 (562)
T 3a79_B 33 ESMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSH 109 (562)
T ss_dssp CCEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTT
T ss_pred CcEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCC
Confidence 3789999999986 665443 8999999999999988888999999999999999999988899999999999999999
Q ss_pred CcccccCCccccCCcCccEeeeeccccCc-cCCccccCCCCCCEEEccCCcCCcccccccCCCCC--CEEEcccccC--C
Q 040495 156 NYLVGEIPSAIGSLFKLERLFIFHNHITG-QLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNL--RLLDIAFNHF--S 230 (443)
Q Consensus 156 n~l~~~~p~~l~~l~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~l~~l~~L--~~L~l~~n~~--~ 230 (443)
|.++ .+|.. .+++|++|++++|.+++ ..|..+.++++|++|++++|.+... .+..+++| ++|++++|.+ .
T Consensus 110 N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~--~~~~l~~L~L~~L~L~~n~l~~~ 184 (562)
T 3a79_B 110 NRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL--DLLPVAHLHLSCILLDLVSYHIK 184 (562)
T ss_dssp SCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT--TTGGGTTSCEEEEEEEESSCCCC
T ss_pred CcCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC--chhhhhhceeeEEEeeccccccc
Confidence 9998 67776 89999999999999986 3568999999999999999988763 34444555 9999999998 6
Q ss_pred CCCCccccCCC---------------------------------------------------------------------
Q 040495 231 GMIPPPIFNIS--------------------------------------------------------------------- 241 (443)
Q Consensus 231 ~~~~~~l~~l~--------------------------------------------------------------------- 241 (443)
+..|..+..+.
T Consensus 185 ~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~ 264 (562)
T 3a79_B 185 GGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWK 264 (562)
T ss_dssp SSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHH
T ss_pred ccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHH
Confidence 66666555432
Q ss_pred ------------CCcEEEcccCcCcccCChhhh----cCC--------------------------CCCcEEeCCCCcCC
Q 040495 242 ------------SLEVISLSENRFTGSLPVDAG----VNL--------------------------PNLRQLSPNGNNFT 279 (443)
Q Consensus 242 ------------~L~~L~l~~n~l~~~~~~~~~----~~~--------------------------~~L~~L~L~~n~l~ 279 (443)
+|++|++++|.++|.+|..++ ..+ .++++|++++|.+.
T Consensus 265 ~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~ 344 (562)
T 3a79_B 265 CSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFI 344 (562)
T ss_dssp HHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCC
T ss_pred HHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcc
Confidence 556666666666666665431 011 23555555555544
Q ss_pred ccCCccCcCCCCCCEEecccCcCccccchhhhCCCCCCEEEccCCCCcccCCCchhhHhhhcCCCCCCEEEccCCcCccc
Q 040495 280 GSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGV 359 (443)
Q Consensus 280 ~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 359 (443)
... ....+++|++|++++|++++..|..+..+++|++|++++|.+++... .+..+.++++|++|++++|++++.
T Consensus 345 ~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~----~~~~~~~l~~L~~L~l~~N~l~~~ 418 (562)
T 3a79_B 345 HMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFK----VALMTKNMSSLETLDVSLNSLNSH 418 (562)
T ss_dssp CCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTH----HHHTTTTCTTCCEEECTTSCCBSC
T ss_pred ccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCccc----chhhhcCCCCCCEEECCCCcCCCc
Confidence 211 11678999999999999999899999999999999999999987432 125588999999999999999976
Q ss_pred CChhHhhhccCCCEEeccCCcCeecCchhhhcCCCCCeEeCcCCcCcccCchhhcCCCCCCEEEccCCcCcccCCcc-cc
Q 040495 360 LPQSMANFSSTIKQIAMGRNRISGTIPPGIRSHANLNWLTMDSNLFTGTIPPVIGELKNLQLLDLGGNFLQGSIPSS-LG 438 (443)
Q Consensus 360 ~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~-~~ 438 (443)
+|...+...++|+.|++++|++++.+|..+. ++|++|++++|+++ .+|..+..+++|++|++++|+++ .+|.. +.
T Consensus 419 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~ 494 (562)
T 3a79_B 419 AYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFD 494 (562)
T ss_dssp CSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTT
T ss_pred cChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHh
Confidence 8876544458999999999999987776554 78999999999999 89988889999999999999999 68876 77
Q ss_pred CCCCC
Q 040495 439 NLTLL 443 (443)
Q Consensus 439 ~l~~L 443 (443)
.++.|
T Consensus 495 ~l~~L 499 (562)
T 3a79_B 495 RLTSL 499 (562)
T ss_dssp TCTTC
T ss_pred cCCCC
Confidence 66654
|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-36 Score=309.35 Aligned_cols=359 Identities=22% Similarity=0.233 Sum_probs=234.7
Q ss_pred CcEEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCCCCCchhhcCCCccCeEEccCCCCCCCCChhhhcCCCCceeec
Q 040495 74 QRVTRLDLRNQSIGGPLSPYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSV 153 (443)
Q Consensus 74 ~~v~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l 153 (443)
..+++|||++|.+++..+.+|.++++|++|+|++|.+++..+.+|.++++|++|++++|.+++..+..|.++++|++|++
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L 131 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 131 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence 46899999999999888889999999999999999999777888999999999999999999766778999999999999
Q ss_pred cCCcccccCCccccCCcCccEeeeeccccCc-cCCccccCCCCCCEEEccCCcCCccc-ccccCCC--------------
Q 040495 154 DTNYLVGEIPSAIGSLFKLERLFIFHNHITG-QLPASIGNLSSLLAFDVRENILWGRI-DSLVQLR-------------- 217 (443)
Q Consensus 154 ~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~l~~n~l~~~~-~~l~~l~-------------- 217 (443)
++|++++..+..|+++++|++|++++|.+++ ..|..+..+++|++|++++|.+.+.. ..+..+.
T Consensus 132 s~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n 211 (635)
T 4g8a_A 132 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 211 (635)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTC
T ss_pred CCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccC
Confidence 9999997666679999999999999999975 46788899999999999999776543 2221111
Q ss_pred -------------CCCEEEcccccCC-------------------------------CC---------------------
Q 040495 218 -------------NLRLLDIAFNHFS-------------------------------GM--------------------- 232 (443)
Q Consensus 218 -------------~L~~L~l~~n~~~-------------------------------~~--------------------- 232 (443)
.++.+++.+|... ..
T Consensus 212 ~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~ 291 (635)
T 4g8a_A 212 PMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYL 291 (635)
T ss_dssp CCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECC
T ss_pred cccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhh
Confidence 1111222111000 00
Q ss_pred ------C----------------------CccccCCCCCcEEEcccCcCcccCC-------------------hhhhcCC
Q 040495 233 ------I----------------------PPPIFNISSLEVISLSENRFTGSLP-------------------VDAGVNL 265 (443)
Q Consensus 233 ------~----------------------~~~l~~l~~L~~L~l~~n~l~~~~~-------------------~~~~~~~ 265 (443)
. ...+.....++.|++.+|.+.+..+ ... ..+
T Consensus 292 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~-~~l 370 (635)
T 4g8a_A 292 DYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSE-VDL 370 (635)
T ss_dssp CSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCC-CBC
T ss_pred cccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCccc-ccc
Confidence 0 0011112244455554444321100 000 124
Q ss_pred CCCcEEeCCCCcCCc-------------------------cCCccCcCCCCCCEEecccCcCccccc-hhhhCCCCCCEE
Q 040495 266 PNLRQLSPNGNNFTG-------------------------SIPVSLSNASRLEMIEFSRNQFSGRVS-VDFSRLKNLSFL 319 (443)
Q Consensus 266 ~~L~~L~L~~n~l~~-------------------------~~~~~l~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L 319 (443)
++|+.+++++|.+.. ..+..+..+++|+.+++.++......+ ..+..+++++.+
T Consensus 371 ~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l 450 (635)
T 4g8a_A 371 PSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYL 450 (635)
T ss_dssp TTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEE
T ss_pred cccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhccccccccccccccccccccc
Confidence 556666666555431 122233445555555555554443332 235556666666
Q ss_pred EccCCCCcccCCCchhhHhhhcCCCCCCEEEccCCcCcc-cCChhHhhhccCCCEEeccCCcCeecCchhhhcCCCCCeE
Q 040495 320 NMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQG-VLPQSMANFSSTIKQIAMGRNRISGTIPPGIRSHANLNWL 398 (443)
Q Consensus 320 ~l~~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~-~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L 398 (443)
+++.|.+.+..+ ..+..++++++|++++|.+.+ ..|..+.. .++|+.|+|++|++++..|..|..+++|++|
T Consensus 451 ~ls~n~l~~~~~------~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~-l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L 523 (635)
T 4g8a_A 451 DISHTHTRVAFN------GIFNGLSSLEVLKMAGNSFQENFLPDIFTE-LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL 523 (635)
T ss_dssp ECTTSCCEECCT------TTTTTCTTCCEEECTTCEEGGGEECSCCTT-CTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred cccccccccccc------cccccchhhhhhhhhhcccccccCchhhhh-ccccCEEECCCCccCCcChHHHcCCCCCCEE
Confidence 666666666555 445566667777776665433 23444444 3567777777777776666666667777777
Q ss_pred eCcCCcCcccCchhhcCCCCCCEEEccCCcCcccCCccccCC
Q 040495 399 TMDSNLFTGTIPPVIGELKNLQLLDLGGNFLQGSIPSSLGNL 440 (443)
Q Consensus 399 ~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l 440 (443)
+|++|++++..|..+..+++|++||+++|++++..|+.+.++
T Consensus 524 ~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l 565 (635)
T 4g8a_A 524 NMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHF 565 (635)
T ss_dssp ECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCC
T ss_pred ECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhh
Confidence 777777765556666666777777777777776666666554
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.2e-36 Score=294.74 Aligned_cols=332 Identities=27% Similarity=0.396 Sum_probs=282.5
Q ss_pred CcEEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCCCCCchhhcCCCccCeEEccCCCCCCCCChhhhcCCCCceeec
Q 040495 74 QRVTRLDLRNQSIGGPLSPYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSV 153 (443)
Q Consensus 74 ~~v~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l 153 (443)
.+++.|+++++.+.. ++ .+..+++|++|++++|.+++. +. +.++++|++|++++|.+++..+ +.++++|++|++
T Consensus 46 ~~l~~L~l~~~~i~~-l~-~~~~l~~L~~L~Ls~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L 119 (466)
T 1o6v_A 46 DQVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLTDI-TP-LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTL 119 (466)
T ss_dssp HTCCEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEEC
T ss_pred ccccEEecCCCCCcc-Cc-chhhhcCCCEEECCCCccCCc-hh-hhccccCCEEECCCCccccChh--hcCCCCCCEEEC
Confidence 478999999998865 44 478899999999999999854 44 9999999999999999985544 899999999999
Q ss_pred cCCcccccCCccccCCcCccEeeeeccccCccCCccccCCCCCCEEEccCCcCCcccccccCCCCCCEEEcccccCCCCC
Q 040495 154 DTNYLVGEIPSAIGSLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLRLLDIAFNHFSGMI 233 (443)
Q Consensus 154 ~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~~~~~~ 233 (443)
++|.+++. +. +..+++|++|++++|.+.+ ++ .+..+++|++|++++ .+... ..+..+++|++|++++|.+.+.
T Consensus 120 ~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~-~~-~~~~l~~L~~L~l~~-~~~~~-~~~~~l~~L~~L~l~~n~l~~~- 192 (466)
T 1o6v_A 120 FNNQITDI-DP-LKNLTNLNRLELSSNTISD-IS-ALSGLTSLQQLSFGN-QVTDL-KPLANLTTLERLDISSNKVSDI- 192 (466)
T ss_dssp CSSCCCCC-GG-GTTCTTCSEEEEEEEEECC-CG-GGTTCTTCSEEEEEE-SCCCC-GGGTTCTTCCEEECCSSCCCCC-
T ss_pred CCCCCCCC-hH-HcCCCCCCEEECCCCccCC-Ch-hhccCCcccEeecCC-cccCc-hhhccCCCCCEEECcCCcCCCC-
Confidence 99999854 43 8999999999999999985 34 589999999999964 33332 4488899999999999998754
Q ss_pred CccccCCCCCcEEEcccCcCcccCChhhhcCCCCCcEEeCCCCcCCccCCccCcCCCCCCEEecccCcCccccchhhhCC
Q 040495 234 PPPIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRL 313 (443)
Q Consensus 234 ~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l 313 (443)
..+..+++|++|++++|.+++..| +. .+++|++|++++|++++. ..+..+++|++|++++|.+++..+ +..+
T Consensus 193 -~~l~~l~~L~~L~l~~n~l~~~~~--~~-~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l 264 (466)
T 1o6v_A 193 -SVLAKLTNLESLIATNNQISDITP--LG-ILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGL 264 (466)
T ss_dssp -GGGGGCTTCSEEECCSSCCCCCGG--GG-GCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTC
T ss_pred -hhhccCCCCCEEEecCCccccccc--cc-ccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhcC
Confidence 458899999999999999986544 33 689999999999999853 467889999999999999997655 8899
Q ss_pred CCCCEEEccCCCCcccCCCchhhHhhhcCCCCCCEEEccCCcCcccCChhHhhhccCCCEEeccCCcCeecCchhhhcCC
Q 040495 314 KNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNRISGTIPPGIRSHA 393 (443)
Q Consensus 314 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~ 393 (443)
++|+.|++++|.+++..+ +..+++|++|++++|++++..+ +.. +++|+.|++++|++++..| +..++
T Consensus 265 ~~L~~L~l~~n~l~~~~~--------~~~l~~L~~L~L~~n~l~~~~~--~~~-l~~L~~L~L~~n~l~~~~~--~~~l~ 331 (466)
T 1o6v_A 265 TKLTELKLGANQISNISP--------LAGLTALTNLELNENQLEDISP--ISN-LKNLTYLTLYFNNISDISP--VSSLT 331 (466)
T ss_dssp TTCSEEECCSSCCCCCGG--------GTTCTTCSEEECCSSCCSCCGG--GGG-CTTCSEEECCSSCCSCCGG--GGGCT
T ss_pred CCCCEEECCCCccCcccc--------ccCCCccCeEEcCCCcccCchh--hcC-CCCCCEEECcCCcCCCchh--hccCc
Confidence 999999999999987643 7789999999999999996444 555 4899999999999997665 78999
Q ss_pred CCCeEeCcCCcCcccCchhhcCCCCCCEEEccCCcCcccCCccccCCCCC
Q 040495 394 NLNWLTMDSNLFTGTIPPVIGELKNLQLLDLGGNFLQGSIPSSLGNLTLL 443 (443)
Q Consensus 394 ~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L 443 (443)
+|++|++++|.+++. ..+..+++|++|++++|++++..| +.+++.|
T Consensus 332 ~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L 377 (466)
T 1o6v_A 332 KLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRI 377 (466)
T ss_dssp TCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTC
T ss_pred cCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCC
Confidence 999999999999854 468899999999999999998877 6666543
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-36 Score=302.24 Aligned_cols=303 Identities=17% Similarity=0.149 Sum_probs=275.9
Q ss_pred CcEEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCCCCCchhhcCCCccCeEEccCCCCCCCCChhhhcCCCCceeec
Q 040495 74 QRVTRLDLRNQSIGGPLSPYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSV 153 (443)
Q Consensus 74 ~~v~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l 153 (443)
..++.|++++|.+.+..+..|.++++|++|++++|.+++..|..|.++++|++|++++|.+++..+..|.++++|++|++
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 111 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDI 111 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEEC
T ss_pred CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEEC
Confidence 57899999999999988889999999999999999999888999999999999999999999666667899999999999
Q ss_pred cCCcccccCCccccCCcCccEeeeeccccCccCCccccCCCCCCEEEccCCcCCccc-ccccCCCCCCEEEcccccCCCC
Q 040495 154 DTNYLVGEIPSAIGSLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRI-DSLVQLRNLRLLDIAFNHFSGM 232 (443)
Q Consensus 154 ~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~-~~l~~l~~L~~L~l~~n~~~~~ 232 (443)
++|.+.+..|..+..+++|++|++++|.+++..+..+.++++|++|++++|.+.... ..+..+++|+.|++++|.+.+.
T Consensus 112 s~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~ 191 (477)
T 2id5_A 112 SENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAI 191 (477)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEE
T ss_pred CCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEe
Confidence 999999888889999999999999999999888889999999999999999998877 6788999999999999999988
Q ss_pred CCccccCCCCCcEEEcccCcCcccCChhhhcCCCCCcEEeCCCCcCCccCCccCcCCCCCCEEecccCcCccccchhhhC
Q 040495 233 IPPPIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSR 312 (443)
Q Consensus 233 ~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~ 312 (443)
.+..+..+++|++|++++|...+.+|...+ ...+|++|++++|++++..+..+..+++|++|++++|++++..+..+..
T Consensus 192 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 270 (477)
T 2id5_A 192 RDYSFKRLYRLKVLEISHWPYLDTMTPNCL-YGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHE 270 (477)
T ss_dssp CTTCSCSCTTCCEEEEECCTTCCEECTTTT-TTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTT
T ss_pred ChhhcccCcccceeeCCCCccccccCcccc-cCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccc
Confidence 888899999999999999998888888777 5679999999999999555567899999999999999999888888999
Q ss_pred CCCCCEEEccCCCCcccCCCchhhHhhhcCCCCCCEEEccCCcCcccCChhHhhhccCCCEEeccCCcCeec
Q 040495 313 LKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNRISGT 384 (443)
Q Consensus 313 l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~ 384 (443)
+++|+.|++++|.+++..+ ..+..+++|++|++++|++++..+..+.. +++|+.|++++|++...
T Consensus 271 l~~L~~L~L~~n~l~~~~~------~~~~~l~~L~~L~L~~N~l~~~~~~~~~~-l~~L~~L~l~~N~l~c~ 335 (477)
T 2id5_A 271 LLRLQEIQLVGGQLAVVEP------YAFRGLNYLRVLNVSGNQLTTLEESVFHS-VGNLETLILDSNPLACD 335 (477)
T ss_dssp CTTCCEEECCSSCCSEECT------TTBTTCTTCCEEECCSSCCSCCCGGGBSC-GGGCCEEECCSSCEECS
T ss_pred cccCCEEECCCCccceECH------HHhcCcccCCEEECCCCcCceeCHhHcCC-CcccCEEEccCCCccCc
Confidence 9999999999999999887 67889999999999999999544444444 58999999999999865
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-36 Score=306.89 Aligned_cols=309 Identities=17% Similarity=0.171 Sum_probs=151.0
Q ss_pred CCCCCEEeCCCCcCCCCCchhhcCCCccCeEEccCCCCCCCCChhhhcCCCCceeeccCCcccccCCccccCCcCccEee
Q 040495 97 LSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSVDTNYLVGEIPSAIGSLFKLERLF 176 (443)
Q Consensus 97 l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ 176 (443)
+.+++.+++++|.+....+..+.++++|++|++++|.+++..|..|..+++|++|++++|.+++..|..++.+++|++|+
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 129 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 129 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence 34455555555555433333344555555555555555544444555555555555555555544444445555555555
Q ss_pred eeccccCccCCccccCCCCCCEEEccCCcCCccc-ccccCCCCCCEEEcccccCCCCCCccccCCCCCcEEEcccCcCcc
Q 040495 177 IFHNHITGQLPASIGNLSSLLAFDVRENILWGRI-DSLVQLRNLRLLDIAFNHFSGMIPPPIFNISSLEVISLSENRFTG 255 (443)
Q Consensus 177 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~ 255 (443)
+++|.+++..+..+.++++|++|++++|.+.+.. ..+..+++|++|++++|.+.+. .+..+++|+.|++++|.+++
T Consensus 130 L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~l~~L~~L~l~~n~l~~ 206 (597)
T 3oja_B 130 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLST 206 (597)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC---CGGGCTTCSEEECCSSCCSE
T ss_pred eeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc---ChhhhhhhhhhhcccCcccc
Confidence 5555555333333445555555555555554444 3445555555555555555432 13334455555555554442
Q ss_pred cCChhhhcCCCCCcEEeCCCCcCCccCCccCcCCCCCCEEecccCcCccccchhhhCCCCCCEEEccCCCCcccCCCchh
Q 040495 256 SLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANELD 335 (443)
Q Consensus 256 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 335 (443)
++ ..++|+.|++++|.+... +..+ .++|+.|++++|.+++ +..+..+++|+.|++++|.+++..+
T Consensus 207 -l~-----~~~~L~~L~ls~n~l~~~-~~~~--~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~---- 271 (597)
T 3oja_B 207 -LA-----IPIAVEELDASHNSINVV-RGPV--NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMY---- 271 (597)
T ss_dssp -EE-----CCTTCSEEECCSSCCCEE-ECSC--CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEES----
T ss_pred -cc-----CCchhheeeccCCccccc-cccc--CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCH----
Confidence 11 234455555555555422 1111 2345555555555554 2334555555555555555555444
Q ss_pred hHhhhcCCCCCCEEEccCCcCcccCChhHhhhccCCCEEeccCCcCeecCchhhhcCCCCCeEeCcCCcCcccCchhhcC
Q 040495 336 FINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNRISGTIPPGIRSHANLNWLTMDSNLFTGTIPPVIGE 415 (443)
Q Consensus 336 ~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~n~~~~~~p~~~~~ 415 (443)
..+..+++|++|++++|.+++ +|..+.. .++|+.|+|++|.++ .+|..+..+++|++|++++|.+++ +| +..
T Consensus 272 --~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~-l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~-~~--~~~ 343 (597)
T 3oja_B 272 --HPFVKMQRLERLYISNNRLVA-LNLYGQP-IPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVT-LK--LST 343 (597)
T ss_dssp --GGGTTCSSCCEEECTTSCCCE-EECSSSC-CTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCC-CC--CCT
T ss_pred --HHhcCccCCCEEECCCCCCCC-CCccccc-CCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCC-cC--hhh
Confidence 344555555555555555552 3333322 245555555555555 345555555555555555555542 22 344
Q ss_pred CCCCCEEEccCCcCcc
Q 040495 416 LKNLQLLDLGGNFLQG 431 (443)
Q Consensus 416 l~~L~~L~l~~n~l~~ 431 (443)
+++|+.|++++|++++
T Consensus 344 ~~~L~~L~l~~N~~~~ 359 (597)
T 3oja_B 344 HHTLKNLTLSHNDWDC 359 (597)
T ss_dssp TCCCSEEECCSSCEEH
T ss_pred cCCCCEEEeeCCCCCC
Confidence 4555555555555543
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-35 Score=292.50 Aligned_cols=333 Identities=18% Similarity=0.186 Sum_probs=265.8
Q ss_pred CcEEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCCCCCchhhcCCCccCeEEccCCCCCCCCChhhhcCCCCceeec
Q 040495 74 QRVTRLDLRNQSIGGPLSPYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSV 153 (443)
Q Consensus 74 ~~v~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l 153 (443)
.+++.|+++++.+++. | .+..+++|++|++++|.+++. | ++.+++|++|++++|.+++. | ++++++|++|++
T Consensus 42 ~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L 113 (457)
T 3bz5_A 42 ATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNC 113 (457)
T ss_dssp TTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEEC
T ss_pred CCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEEC
Confidence 5789999999999874 4 689999999999999999864 4 88999999999999999964 4 889999999999
Q ss_pred cCCcccccCCccccCCcCccEeeeeccccCccCCccccCCCCCCEEEccCCcCCcccccccCCCCCCEEEcccccCCCCC
Q 040495 154 DTNYLVGEIPSAIGSLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLRLLDIAFNHFSGMI 233 (443)
Q Consensus 154 ~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~~~~~~ 233 (443)
++|.+++ +| ++.+++|++|++++|.+++. + ++.+++|++|++++|...+.. .+..+++|++|++++|.+++ +
T Consensus 114 ~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l-~--l~~l~~L~~L~l~~n~~~~~~-~~~~l~~L~~L~ls~n~l~~-l 185 (457)
T 3bz5_A 114 DTNKLTK-LD--VSQNPLLTYLNCARNTLTEI-D--VSHNTQLTELDCHLNKKITKL-DVTPQTQLTTLDCSFNKITE-L 185 (457)
T ss_dssp CSSCCSC-CC--CTTCTTCCEEECTTSCCSCC-C--CTTCTTCCEEECTTCSCCCCC-CCTTCTTCCEEECCSSCCCC-C
T ss_pred CCCcCCe-ec--CCCCCcCCEEECCCCcccee-c--cccCCcCCEEECCCCCccccc-ccccCCcCCEEECCCCccce-e
Confidence 9999985 44 88999999999999999963 3 788999999999999655444 57788999999999999986 4
Q ss_pred CccccCCCCCcEEEcccCcCcccCChhhhcCCCCCcEEeCCCCcCCccCCccCcCCCCCCEEecccCcCccccchhhhCC
Q 040495 234 PPPIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRL 313 (443)
Q Consensus 234 ~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l 313 (443)
| +..+++|++|++++|.+++ ++ +. .+++|++|++++|++++ +| +..+++|+.|++++|++++..+. .+
T Consensus 186 ~--l~~l~~L~~L~l~~N~l~~-~~--l~-~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~~~---~l 253 (457)
T 3bz5_A 186 D--VSQNKLLNRLNCDTNNITK-LD--LN-QNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELDVS---TL 253 (457)
T ss_dssp C--CTTCTTCCEEECCSSCCSC-CC--CT-TCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCCCT---TC
T ss_pred c--cccCCCCCEEECcCCcCCe-ec--cc-cCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcCHH---HC
Confidence 4 8889999999999999985 43 33 78999999999999996 56 88899999999999999986543 45
Q ss_pred CCCCEEEccCCCCcccCCCchhhH--hhhcCCCCCCEEEccCCcCcccCChh--------HhhhccCCCEEeccCCcCee
Q 040495 314 KNLSFLNMGINNLGTRTANELDFI--NLLANCSKLERLYFNRNRFQGVLPQS--------MANFSSTIKQIAMGRNRISG 383 (443)
Q Consensus 314 ~~L~~L~l~~n~l~~~~~~~~~~~--~~~~~~~~L~~L~l~~n~l~~~~p~~--------~~~~~~~L~~L~L~~n~l~~ 383 (443)
++|+.|+++.|++........... -.+..+++|+.|++++|...+.+|.. +.. .++|+.|++++|++++
T Consensus 254 ~~L~~L~l~~n~L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~-~~~L~~L~L~~N~l~~ 332 (457)
T 3bz5_A 254 SKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQ-NPKLVYLYLNNTELTE 332 (457)
T ss_dssp TTCCEEECTTCCCSCCCCTTCTTCCEEECTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTT-CTTCCEEECTTCCCSC
T ss_pred CCCCEEeccCCCCCEEECCCCccCCcccccccccCCEEECCCCcccceeccCCCcceEechhh-cccCCEEECCCCcccc
Confidence 555555555554433221100000 01467899999999999877776642 222 3689999999999997
Q ss_pred cCchhhhcCCCCCeEeCcCCcCcccCch--hh----------cCCCCCCEEEccCCcCcccCCccccC
Q 040495 384 TIPPGIRSHANLNWLTMDSNLFTGTIPP--VI----------GELKNLQLLDLGGNFLQGSIPSSLGN 439 (443)
Q Consensus 384 ~~p~~l~~~~~L~~L~L~~n~~~~~~p~--~~----------~~l~~L~~L~l~~n~l~~~~p~~~~~ 439 (443)
++ ++.+++|+.|++++|++++ ++. .+ +.+..|+.+++++|+++|.||..+..
T Consensus 333 -l~--l~~l~~L~~L~l~~N~l~~-l~~L~~L~l~~n~l~g~~~~~~l~~l~l~~N~l~g~ip~~~~~ 396 (457)
T 3bz5_A 333 -LD--VSHNTKLKSLSCVNAHIQD-FSSVGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLLD 396 (457)
T ss_dssp -CC--CTTCTTCSEEECCSSCCCB-CTTGGGSSGGGTSEEEEEEEEECCCBCCBTTBEEEECCTTCBC
T ss_pred -cc--cccCCcCcEEECCCCCCCC-ccccccccccCCcEEecceeeecCccccccCcEEEEcChhHhc
Confidence 43 8899999999999999985 332 00 12356788999999999999987643
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-35 Score=278.23 Aligned_cols=306 Identities=22% Similarity=0.364 Sum_probs=218.9
Q ss_pred cCCCCCCEEeCCCCcCCCCCchhhcCCCccCeEEccCCCCCCCCChhhhcCCCCceeeccCCcccccCCccccCCcCccE
Q 040495 95 GNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSVDTNYLVGEIPSAIGSLFKLER 174 (443)
Q Consensus 95 ~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~ 174 (443)
..+++|++|+++++.+. .++. +..+++|++|++++|.+++ ++. +..+++|++|++++|.++. + +.+..+++|++
T Consensus 41 ~~l~~L~~L~l~~~~i~-~~~~-~~~~~~L~~L~l~~n~i~~-~~~-~~~l~~L~~L~L~~n~i~~-~-~~~~~l~~L~~ 114 (347)
T 4fmz_A 41 EELESITKLVVAGEKVA-SIQG-IEYLTNLEYLNLNGNQITD-ISP-LSNLVKLTNLYIGTNKITD-I-SALQNLTNLRE 114 (347)
T ss_dssp HHHTTCSEEECCSSCCC-CCTT-GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCSE
T ss_pred hhcccccEEEEeCCccc-cchh-hhhcCCccEEEccCCcccc-chh-hhcCCcCCEEEccCCcccC-c-hHHcCCCcCCE
Confidence 35566666666666655 3332 5666666666666666653 333 6666666666666666653 2 24666666777
Q ss_pred eeeeccccCccCCccccCCCCCCEEEccCCcCCcccccccCCCCCCEEEcccccCCCCCCccccCCCCCcEEEcccCcCc
Q 040495 175 LFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLRLLDIAFNHFSGMIPPPIFNISSLEVISLSENRFT 254 (443)
Q Consensus 175 L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~ 254 (443)
|++++|.+++ ++. +..+++|++|++++|........+..+++|++|++++|.+.+..+ +..+++|++|++++|.+.
T Consensus 115 L~l~~n~i~~-~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~ 190 (347)
T 4fmz_A 115 LYLNEDNISD-ISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIE 190 (347)
T ss_dssp EECTTSCCCC-CGG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCC
T ss_pred EECcCCcccC-chh-hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccc
Confidence 7777666663 232 666777777777777555445556777777777777777764432 677788888888888877
Q ss_pred ccCChhhhcCCCCCcEEeCCCCcCCccCCccCcCCCCCCEEecccCcCccccchhhhCCCCCCEEEccCCCCcccCCCch
Q 040495 255 GSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANEL 334 (443)
Q Consensus 255 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 334 (443)
.++. + ..+++|+.+++++|.+++..+ +..+++|++|++++|++++..+ +..+++|++|++++|.+++.
T Consensus 191 -~~~~-~-~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~----- 258 (347)
T 4fmz_A 191 -DISP-L-ASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI----- 258 (347)
T ss_dssp -CCGG-G-GGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC-----
T ss_pred -cccc-c-cCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC-----
Confidence 4443 3 367888888888888875443 7778888888888888886544 78888999999998888764
Q ss_pred hhHhhhcCCCCCCEEEccCCcCcccCChhHhhhccCCCEEeccCCcCeecCchhhhcCCCCCeEeCcCCcCcccCchhhc
Q 040495 335 DFINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNRISGTIPPGIRSHANLNWLTMDSNLFTGTIPPVIG 414 (443)
Q Consensus 335 ~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~n~~~~~~p~~~~ 414 (443)
..+..+++|++|++++|++++ ++ .+.. +++|+.|++++|++++..|..+..+++|++|++++|++++..| +.
T Consensus 259 ---~~~~~l~~L~~L~l~~n~l~~-~~-~~~~-l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~ 330 (347)
T 4fmz_A 259 ---NAVKDLTKLKMLNVGSNQISD-IS-VLNN-LSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LA 330 (347)
T ss_dssp ---GGGTTCTTCCEEECCSSCCCC-CG-GGGG-CTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GG
T ss_pred ---hhHhcCCCcCEEEccCCccCC-Ch-hhcC-CCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hh
Confidence 237788899999999999884 43 3444 4889999999999998888889999999999999999986555 78
Q ss_pred CCCCCCEEEccCCcCc
Q 040495 415 ELKNLQLLDLGGNFLQ 430 (443)
Q Consensus 415 ~l~~L~~L~l~~n~l~ 430 (443)
.+++|++|++++|+++
T Consensus 331 ~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 331 SLSKMDSADFANQVIK 346 (347)
T ss_dssp GCTTCSEESSSCC---
T ss_pred hhhccceeehhhhccc
Confidence 8999999999999875
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.4e-35 Score=281.36 Aligned_cols=311 Identities=17% Similarity=0.176 Sum_probs=271.7
Q ss_pred CcEEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCCCCCchhhcCCCccCeEEccCCCCCCCCChhhhcCCCCceeec
Q 040495 74 QRVTRLDLRNQSIGGPLSPYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSV 153 (443)
Q Consensus 74 ~~v~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l 153 (443)
..++.++++++.+....+..+..+++|++|++++|.+++..+..++.+++|++|++++|.+++..|..+.++++|++|++
T Consensus 45 ~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 124 (390)
T 3o6n_A 45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 124 (390)
T ss_dssp CCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEEC
Confidence 46788999999887765566889999999999999999777789999999999999999999888888999999999999
Q ss_pred cCCcccccCCc-cccCCcCccEeeeeccccCccCCccccCCCCCCEEEccCCcCCcccccccCCCCCCEEEcccccCCCC
Q 040495 154 DTNYLVGEIPS-AIGSLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLRLLDIAFNHFSGM 232 (443)
Q Consensus 154 ~~n~l~~~~p~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~~~~~ 232 (443)
++|.++ .+|. .++.+++|++|++++|.+++..+..+..+++|++|++++|.+... .+..+++|+.+++++|.+.+
T Consensus 125 ~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~l~~L~~L~l~~n~l~~- 200 (390)
T 3o6n_A 125 ERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV--DLSLIPSLFHANVSYNLLST- 200 (390)
T ss_dssp CSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC--CGGGCTTCSEEECCSSCCSE-
T ss_pred CCCccC-cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc--ccccccccceeecccccccc-
Confidence 999998 4554 468999999999999999988788899999999999999988875 35668999999999998863
Q ss_pred CCccccCCCCCcEEEcccCcCcccCChhhhcCCCCCcEEeCCCCcCCccCCccCcCCCCCCEEecccCcCccccchhhhC
Q 040495 233 IPPPIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSR 312 (443)
Q Consensus 233 ~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~ 312 (443)
+...++|++|++++|.+. .+|.. ..++|++|++++|++++. ..+..+++|++|++++|.+++..|..+..
T Consensus 201 ----~~~~~~L~~L~l~~n~l~-~~~~~---~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~ 270 (390)
T 3o6n_A 201 ----LAIPIAVEELDASHNSIN-VVRGP---VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVK 270 (390)
T ss_dssp ----EECCSSCSEEECCSSCCC-EEECC---CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTT
T ss_pred ----cCCCCcceEEECCCCeee-ecccc---ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccc
Confidence 334568999999999998 45543 357999999999999854 57889999999999999999999999999
Q ss_pred CCCCCEEEccCCCCcccCCCchhhHhhhcCCCCCCEEEccCCcCcccCChhHhhhccCCCEEeccCCcCeecCchhhhcC
Q 040495 313 LKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNRISGTIPPGIRSH 392 (443)
Q Consensus 313 l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~~ 392 (443)
+++|+.|++++|.+++... .+..+++|++|++++|+++ .+|..+..+ ++|+.|++++|++++ ++ +..+
T Consensus 271 l~~L~~L~L~~n~l~~~~~-------~~~~l~~L~~L~L~~n~l~-~~~~~~~~l-~~L~~L~L~~N~i~~-~~--~~~~ 338 (390)
T 3o6n_A 271 MQRLERLYISNNRLVALNL-------YGQPIPTLKVLDLSHNHLL-HVERNQPQF-DRLENLYLDHNSIVT-LK--LSTH 338 (390)
T ss_dssp CSSCCEEECCSSCCCEEEC-------SSSCCTTCCEEECCSSCCC-CCGGGHHHH-TTCSEEECCSSCCCC-CC--CCTT
T ss_pred cccCCEEECCCCcCcccCc-------ccCCCCCCCEEECCCCcce-ecCcccccc-CcCCEEECCCCccce-eC--chhh
Confidence 9999999999999988644 3567899999999999999 778877775 899999999999984 44 7788
Q ss_pred CCCCeEeCcCCcCcccCc
Q 040495 393 ANLNWLTMDSNLFTGTIP 410 (443)
Q Consensus 393 ~~L~~L~L~~n~~~~~~p 410 (443)
++|++|++++|++...-.
T Consensus 339 ~~L~~L~l~~N~~~~~~~ 356 (390)
T 3o6n_A 339 HTLKNLTLSHNDWDCNSL 356 (390)
T ss_dssp CCCSEEECCSSCEEHHHH
T ss_pred ccCCEEEcCCCCccchhH
Confidence 999999999999986433
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-34 Score=282.97 Aligned_cols=305 Identities=20% Similarity=0.234 Sum_probs=260.6
Q ss_pred ccccccCCCCCCEEeCCCCcCCCCCchhhcCCCccCeEEccCCCCCCCCChhhhcCCCCceeeccCCcccccCCccccCC
Q 040495 90 LSPYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSVDTNYLVGEIPSAIGSL 169 (443)
Q Consensus 90 ~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l 169 (443)
.+..+.++++|++|++++|.+++ +| .++.+++|++|++++|.+++. | +..+++|++|++++|.+++. + ++.+
T Consensus 34 ~~~~~~~l~~L~~L~Ls~n~l~~-~~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l 105 (457)
T 3bz5_A 34 DTISEEQLATLTSLDCHNSSITD-MT-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPL 105 (457)
T ss_dssp SEEEHHHHTTCCEEECCSSCCCC-CT-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTC
T ss_pred cccChhHcCCCCEEEccCCCccc-Ch-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCC
Confidence 34467889999999999999986 45 689999999999999999964 4 88999999999999999864 4 8899
Q ss_pred cCccEeeeeccccCccCCccccCCCCCCEEEccCCcCCcccccccCCCCCCEEEcccccCCCCCCccccCCCCCcEEEcc
Q 040495 170 FKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLRLLDIAFNHFSGMIPPPIFNISSLEVISLS 249 (443)
Q Consensus 170 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~ 249 (443)
++|++|++++|.+++ +| +..+++|++|++++|.+++. .++.+++|++|++++|...+.+ .+..+++|++|+++
T Consensus 106 ~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l--~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls 178 (457)
T 3bz5_A 106 TKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTEI--DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCS 178 (457)
T ss_dssp TTCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSCC--CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECC
T ss_pred CcCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCcccee--ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECC
Confidence 999999999999996 44 88999999999999999885 4788999999999999766665 47889999999999
Q ss_pred cCcCcccCChhhhcCCCCCcEEeCCCCcCCccCCccCcCCCCCCEEecccCcCccccchhhhCCCCCCEEEccCCCCccc
Q 040495 250 ENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLGTR 329 (443)
Q Consensus 250 ~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 329 (443)
+|.+++ +| +. .+++|++|++++|++++. .+..+++|++|++++|++++ +| +..+++|+.|++++|.+++.
T Consensus 179 ~n~l~~-l~--l~-~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~ 248 (457)
T 3bz5_A 179 FNKITE-LD--VS-QNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTEL 248 (457)
T ss_dssp SSCCCC-CC--CT-TCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCC
T ss_pred CCccce-ec--cc-cCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCc
Confidence 999984 66 33 789999999999999964 38899999999999999998 45 78999999999999999987
Q ss_pred CCCchhhHhhhcCCC-------CCCEEEccCCcCcccCChhHhhhccCCCEEeccCCcCeecCch--------hhhcCCC
Q 040495 330 TANELDFINLLANCS-------KLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNRISGTIPP--------GIRSHAN 394 (443)
Q Consensus 330 ~~~~~~~~~~~~~~~-------~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~--------~l~~~~~ 394 (443)
.+ ..+.++. +|+.|++++|.+.+.+|. .. +++|+.|++++|...+.+|. .+..+++
T Consensus 249 ~~------~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~--~~-l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~ 319 (457)
T 3bz5_A 249 DV------STLSKLTTLHCIQTDLLEIDLTHNTQLIYFQA--EG-CRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPK 319 (457)
T ss_dssp CC------TTCTTCCEEECTTCCCSCCCCTTCTTCCEEEC--TT-CTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTT
T ss_pred CH------HHCCCCCEEeccCCCCCEEECCCCccCCcccc--cc-cccCCEEECCCCcccceeccCCCcceEechhhccc
Confidence 65 2333333 567777777877777773 33 48999999999998877764 2566789
Q ss_pred CCeEeCcCCcCcccCchhhcCCCCCCEEEccCCcCcc
Q 040495 395 LNWLTMDSNLFTGTIPPVIGELKNLQLLDLGGNFLQG 431 (443)
Q Consensus 395 L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~ 431 (443)
|++|++++|++++ ++ +..+++|+.|++++|+++|
T Consensus 320 L~~L~L~~N~l~~-l~--l~~l~~L~~L~l~~N~l~~ 353 (457)
T 3bz5_A 320 LVYLYLNNTELTE-LD--VSHNTKLKSLSCVNAHIQD 353 (457)
T ss_dssp CCEEECTTCCCSC-CC--CTTCTTCSEEECCSSCCCB
T ss_pred CCEEECCCCcccc-cc--cccCCcCcEEECCCCCCCC
Confidence 9999999999997 44 8899999999999999996
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-34 Score=284.73 Aligned_cols=338 Identities=23% Similarity=0.283 Sum_probs=160.0
Q ss_pred CcEEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCCCCCchhhcCCCcc-------------CeEEccCCCCCCCCCh
Q 040495 74 QRVTRLDLRNQSIGGPLSPYVGNLSFLRYINLANNGFLGEIPPQIGRLNML-------------EGLVLSNNSFSGTIPT 140 (443)
Q Consensus 74 ~~v~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L-------------~~L~l~~n~~~~~~p~ 140 (443)
.+++.|+++++.+ |.+|+.++++++|++|++++|.+.|.+|..++++++| ++|++++|.+++ +|.
T Consensus 11 ~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-lp~ 88 (454)
T 1jl5_A 11 TFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-LPE 88 (454)
T ss_dssp ------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-CCS
T ss_pred ccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-CCC
Confidence 4677788888877 6777777888888888888777777777777766543 566666665553 222
Q ss_pred hhhcCCCCceeeccCCcccccCCccc----------------cCC-cCccEeeeeccccCccCCccccCCCCCCEEEccC
Q 040495 141 NLSRRSNLIELSVDTNYLVGEIPSAI----------------GSL-FKLERLFIFHNHITGQLPASIGNLSSLLAFDVRE 203 (443)
Q Consensus 141 ~l~~l~~L~~L~l~~n~l~~~~p~~l----------------~~l-~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~ 203 (443)
. .++|++|++++|.+++ +|..+ ... ++|++|++++|.+++ +| .++++++|++|++++
T Consensus 89 ~---~~~L~~L~l~~n~l~~-lp~~~~~L~~L~l~~n~l~~l~~~~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~ 162 (454)
T 1jl5_A 89 L---PPHLESLVASCNSLTE-LPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDN 162 (454)
T ss_dssp C---CTTCSEEECCSSCCSS-CCCCCTTCCEEECCSSCCSCCCSCCTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCS
T ss_pred C---cCCCCEEEccCCcCCc-cccccCCCcEEECCCCccCcccCCCCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCC
Confidence 1 1344444444444432 22211 011 466777777776664 55 466777777777777
Q ss_pred CcCCcccccccCCCCCCEEEcccccCCCCCCccccCCCCCcEEEcccCcCcccCChhhhcCCCCCcEEeCCCCcCCccCC
Q 040495 204 NILWGRIDSLVQLRNLRLLDIAFNHFSGMIPPPIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIP 283 (443)
Q Consensus 204 n~l~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~ 283 (443)
|.+.+.+.. .++|++|++++|.+.+ +| .+.++++|++|++++|.+++ +|. ..++|++|++++|.++ .+|
T Consensus 163 N~l~~lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~----~~~~L~~L~l~~n~l~-~lp 231 (454)
T 1jl5_A 163 NSLKKLPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPD----LPLSLESIVAGNNILE-ELP 231 (454)
T ss_dssp SCCSCCCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCC----CCTTCCEEECCSSCCS-SCC
T ss_pred CcCcccCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCC----CcCcccEEECcCCcCC-ccc
Confidence 766653322 2366667777666664 34 46666667777776666653 432 1245666666666655 444
Q ss_pred ccCcCCCCCCEEecccCcCccccchhh-----------------hCCCCCCEEEccCCCCcccC--CCchhhH-------
Q 040495 284 VSLSNASRLEMIEFSRNQFSGRVSVDF-----------------SRLKNLSFLNMGINNLGTRT--ANELDFI------- 337 (443)
Q Consensus 284 ~~l~~~~~L~~L~l~~n~l~~~~~~~~-----------------~~l~~L~~L~l~~n~l~~~~--~~~~~~~------- 337 (443)
.+..+++|++|++++|++++ +|..+ ...++|+.|++++|.+++.. +..+...
T Consensus 232 -~~~~l~~L~~L~l~~N~l~~-l~~~~~~L~~L~l~~N~l~~l~~~~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l 309 (454)
T 1jl5_A 232 -ELQNLPFLTTIYADNNLLKT-LPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEI 309 (454)
T ss_dssp -CCTTCTTCCEEECCSSCCSS-CCSCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSEESCCCTTCCEEECCSSCC
T ss_pred -ccCCCCCCCEEECCCCcCCc-ccccccccCEEECCCCcccccCcccCcCCEEECcCCccCcccCcCCcCCEEECcCCcC
Confidence 25566666666666666554 22111 01234555555555554421 1100000
Q ss_pred hhhcCC-CCCCEEEccCCcCcccCChhHhhhccCCCEEeccCCcCeecCchhhhcCCCCCeEeCcCCcCcc--cCchhhc
Q 040495 338 NLLANC-SKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNRISGTIPPGIRSHANLNWLTMDSNLFTG--TIPPVIG 414 (443)
Q Consensus 338 ~~~~~~-~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~n~~~~--~~p~~~~ 414 (443)
..+... ++|++|++++|++++ +|.. +++|+.|++++|+++ .+|. .+++|++|++++|++++ .+|..+.
T Consensus 310 ~~i~~~~~~L~~L~Ls~N~l~~-lp~~----~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~ 380 (454)
T 1jl5_A 310 RSLCDLPPSLEELNVSNNKLIE-LPAL----PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVE 380 (454)
T ss_dssp SEECCCCTTCCEEECCSSCCSC-CCCC----CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCC
T ss_pred CcccCCcCcCCEEECCCCcccc-cccc----CCcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHHHH
Confidence 001122 356666666666663 4432 256677777777766 4555 35677777777777776 6666666
Q ss_pred CC-------------CCCCEEEccCCcCcc--cCCccccCCC
Q 040495 415 EL-------------KNLQLLDLGGNFLQG--SIPSSLGNLT 441 (443)
Q Consensus 415 ~l-------------~~L~~L~l~~n~l~~--~~p~~~~~l~ 441 (443)
.+ ++|++|++++|+++| .+|.++.++.
T Consensus 381 ~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP~sl~~L~ 422 (454)
T 1jl5_A 381 DLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPESVEDLR 422 (454)
T ss_dssp EEECCC------------------------------------
T ss_pred hhhhcccccccccccCcCCEEECCCCcCCccccchhhHhhee
Confidence 65 677777777777777 6777766553
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-34 Score=291.92 Aligned_cols=335 Identities=16% Similarity=0.132 Sum_probs=285.1
Q ss_pred CCCCCCCCCCCCC----ccceeeCCC----------------CCcEEEEEcCCCCCcccccccccCCCCCCEEeCCCCcC
Q 040495 51 VTSSWNNSMSLCQ----WTGVTCGRR----------------HQRVTRLDLRNQSIGGPLSPYVGNLSFLRYINLANNGF 110 (443)
Q Consensus 51 ~~~~w~~~~~~c~----w~gv~c~~~----------------~~~v~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~ 110 (443)
.+.+|..+.+||. |.++.|+.. ...++.++++++.+.+..+..+..+++|++|++++|.+
T Consensus 8 ~l~~~~~~~~C~~~~~~~~c~~~~~~i~~~~~~~~~~~~~l~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l 87 (597)
T 3oja_B 8 NVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQI 87 (597)
T ss_dssp ---CCCSEECCCCC--CCSEEECSCEECSSCCCCEESCSSGGGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCC
T ss_pred cccCCCCCCcCcccCcCceeEecCceecccccccccCcccccCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCC
Confidence 4567887767664 655544310 03568899999988776666788999999999999999
Q ss_pred CCCCchhhcCCCccCeEEccCCCCCCCCChhhhcCCCCceeeccCCcccccCCccccCCcCccEeeeeccccCccCCccc
Q 040495 111 LGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSVDTNYLVGEIPSAIGSLFKLERLFIFHNHITGQLPASI 190 (443)
Q Consensus 111 ~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l 190 (443)
++..+..|+.+++|++|++++|.+++..|..|+++++|++|++++|.+++..+..++.+++|++|++++|.+++..|..+
T Consensus 88 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 167 (597)
T 3oja_B 88 EEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTF 167 (597)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTT
T ss_pred CCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhh
Confidence 98888899999999999999999998888889999999999999999995545557999999999999999998888889
Q ss_pred cCCCCCCEEEccCCcCCcccccccCCCCCCEEEcccccCCCCCCccccCCCCCcEEEcccCcCcccCChhhhcCCCCCcE
Q 040495 191 GNLSSLLAFDVRENILWGRIDSLVQLRNLRLLDIAFNHFSGMIPPPIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQ 270 (443)
Q Consensus 191 ~~l~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~ 270 (443)
..+++|++|++++|.+.+.. +..+++|+.|++++|.+.+ +...++|++|++++|.++ .++.. ..++|+.
T Consensus 168 ~~l~~L~~L~L~~N~l~~~~--~~~l~~L~~L~l~~n~l~~-----l~~~~~L~~L~ls~n~l~-~~~~~---~~~~L~~ 236 (597)
T 3oja_B 168 QATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSIN-VVRGP---VNVELTI 236 (597)
T ss_dssp TTCTTCCEEECTTSCCSBCC--GGGCTTCSEEECCSSCCSE-----EECCTTCSEEECCSSCCC-EEECS---CCSCCCE
T ss_pred hcCCcCcEEECcCCCCCCcC--hhhhhhhhhhhcccCcccc-----ccCCchhheeeccCCccc-ccccc---cCCCCCE
Confidence 99999999999999988753 5668999999999998864 345578999999999997 45543 3478999
Q ss_pred EeCCCCcCCccCCccCcCCCCCCEEecccCcCccccchhhhCCCCCCEEEccCCCCcccCCCchhhHhhhcCCCCCCEEE
Q 040495 271 LSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLY 350 (443)
Q Consensus 271 L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~L~~L~ 350 (443)
|++++|.+++ +..+..+++|+.|++++|.+++..|..+..+++|+.|++++|.+++... .+..+++|++|+
T Consensus 237 L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~-------~~~~l~~L~~L~ 307 (597)
T 3oja_B 237 LKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNL-------YGQPIPTLKVLD 307 (597)
T ss_dssp EECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEEC-------SSSCCTTCCEEE
T ss_pred EECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCCc-------ccccCCCCcEEE
Confidence 9999999986 4678999999999999999999999999999999999999999998644 356789999999
Q ss_pred ccCCcCcccCChhHhhhccCCCEEeccCCcCeecCchhhhcCCCCCeEeCcCCcCcccCc
Q 040495 351 FNRNRFQGVLPQSMANFSSTIKQIAMGRNRISGTIPPGIRSHANLNWLTMDSNLFTGTIP 410 (443)
Q Consensus 351 l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~n~~~~~~p 410 (443)
+++|.++ .+|..+..+ ++|+.|++++|.+++. | +..+++|+.|++++|++.+..+
T Consensus 308 Ls~N~l~-~i~~~~~~l-~~L~~L~L~~N~l~~~-~--~~~~~~L~~L~l~~N~~~~~~~ 362 (597)
T 3oja_B 308 LSHNHLL-HVERNQPQF-DRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSL 362 (597)
T ss_dssp CCSSCCC-CCGGGHHHH-TTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHH
T ss_pred CCCCCCC-ccCcccccC-CCCCEEECCCCCCCCc-C--hhhcCCCCEEEeeCCCCCChhH
Confidence 9999999 788888775 8999999999999854 3 6778999999999999986543
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-35 Score=278.11 Aligned_cols=268 Identities=22% Similarity=0.286 Sum_probs=187.0
Q ss_pred CCCCHHHHHHHHHHHHhCC-CCCCCCCCC----CCCCCCCCccceeeCC--------CCCcEEEEEcCCCCCcccccccc
Q 040495 28 ANSNETDRLALLAIKLQLH-DPLGVTSSW----NNSMSLCQWTGVTCGR--------RHQRVTRLDLRNQSIGGPLSPYV 94 (443)
Q Consensus 28 ~~~~~~~~~~l~~~~~~~~-~~~~~~~~w----~~~~~~c~w~gv~c~~--------~~~~v~~L~l~~~~~~~~~~~~~ 94 (443)
..+..+++.||++||..+. ++.++...| ....++|.|.|+.|.. ...+|+.|+++++.+. .+|..+
T Consensus 22 ~~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp~~l 100 (328)
T 4fcg_A 22 STALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQA 100 (328)
T ss_dssp -CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCCSCG
T ss_pred cccCchHHHHHHHHHHhccCCchhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCch-hcChhh
Confidence 4456788999999999884 777777788 4566889999999942 2367889999988887 577778
Q ss_pred cCCCCCCEEeCCCCcCCCCCchhhcCCCccCeEEccCCCCCCCCChhhhcCCCCceeeccCCcccccCCccccC------
Q 040495 95 GNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSVDTNYLVGEIPSAIGS------ 168 (443)
Q Consensus 95 ~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~------ 168 (443)
.++++|++|++++|.++ .+|..++++++|++|++++|.++ .+|..+.++++|++|++++|++.+.+|..+..
T Consensus 101 ~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~ 178 (328)
T 4fcg_A 101 FRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGE 178 (328)
T ss_dssp GGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCC
T ss_pred hhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhh
Confidence 88889999999998888 88888888889999999988888 77888888888999988888887788876654
Q ss_pred ---CcCccEeeeeccccCccCCccccCCCCCCEEEccCCcCCcccccccCCCCCCEEEcccccCCCCCCccccCCCCCcE
Q 040495 169 ---LFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLRLLDIAFNHFSGMIPPPIFNISSLEV 245 (443)
Q Consensus 169 ---l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~ 245 (443)
+++|++|++++|.++ .+|..+.++++|++|++++|.+.+.+..+..+++|++|++++|.+.+.+|..+..+++|++
T Consensus 179 ~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~ 257 (328)
T 4fcg_A 179 HQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKR 257 (328)
T ss_dssp EEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCE
T ss_pred hccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCE
Confidence 667777777777766 5666666666666666666666554445555556666666655555555555555555555
Q ss_pred EEcccCcCcccCChhhhcCCCCCcEEeCCCCcCCccCCccCcCCCCCCEEecccC
Q 040495 246 ISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRN 300 (443)
Q Consensus 246 L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n 300 (443)
|++++|.+.+.+|..+. .+++|++|++++|++.+.+|..+.++++++.+++..+
T Consensus 258 L~L~~n~~~~~~p~~~~-~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 258 LILKDCSNLLTLPLDIH-RLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH 311 (328)
T ss_dssp EECTTCTTCCBCCTTGG-GCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGG
T ss_pred EECCCCCchhhcchhhh-cCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHH
Confidence 55555555555554443 4455555555555554455555555555555544443
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-33 Score=267.64 Aligned_cols=303 Identities=23% Similarity=0.378 Sum_probs=258.8
Q ss_pred CcEEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCCCCCchhhcCCCccCeEEccCCCCCCCCChhhhcCCCCceeec
Q 040495 74 QRVTRLDLRNQSIGGPLSPYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSV 153 (443)
Q Consensus 74 ~~v~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l 153 (443)
.++++|+++++.+... + .+..+++|++|++++|.+++ ++. +.++++|++|++++|.+++ +| .+..+++|++|++
T Consensus 44 ~~L~~L~l~~~~i~~~-~-~~~~~~~L~~L~l~~n~i~~-~~~-~~~l~~L~~L~L~~n~i~~-~~-~~~~l~~L~~L~l 117 (347)
T 4fmz_A 44 ESITKLVVAGEKVASI-Q-GIEYLTNLEYLNLNGNQITD-ISP-LSNLVKLTNLYIGTNKITD-IS-ALQNLTNLRELYL 117 (347)
T ss_dssp TTCSEEECCSSCCCCC-T-TGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCC-CG-GGTTCTTCSEEEC
T ss_pred ccccEEEEeCCccccc-h-hhhhcCCccEEEccCCcccc-chh-hhcCCcCCEEEccCCcccC-ch-HHcCCCcCCEEEC
Confidence 5789999999988753 3 48899999999999999984 444 8999999999999999984 44 6899999999999
Q ss_pred cCCcccccCCccccCCcCccEeeeeccccCccCCccccCCCCCCEEEccCCcCCcccccccCCCCCCEEEcccccCCCCC
Q 040495 154 DTNYLVGEIPSAIGSLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLRLLDIAFNHFSGMI 233 (443)
Q Consensus 154 ~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~~~~~~ 233 (443)
++|.+.+ ++. +..+++|++|++++|...... ..+..+++|++|++++|.+..... +..+++|++|++++|.+.+..
T Consensus 118 ~~n~i~~-~~~-~~~l~~L~~L~l~~n~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~ 193 (347)
T 4fmz_A 118 NEDNISD-ISP-LANLTKMYSLNLGANHNLSDL-SPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQIEDIS 193 (347)
T ss_dssp TTSCCCC-CGG-GTTCTTCCEEECTTCTTCCCC-GGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSCCCCCG
T ss_pred cCCcccC-chh-hccCCceeEEECCCCCCcccc-cchhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCcccccc
Confidence 9999984 444 889999999999999766444 448999999999999998876554 788999999999999998543
Q ss_pred CccccCCCCCcEEEcccCcCcccCChhhhcCCCCCcEEeCCCCcCCccCCccCcCCCCCCEEecccCcCccccchhhhCC
Q 040495 234 PPPIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRL 313 (443)
Q Consensus 234 ~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l 313 (443)
. +..+++|+.+++++|.+++. +. + ..+++|++|++++|++++..+ +..+++|++|++++|.+++. ..+..+
T Consensus 194 -~-~~~l~~L~~L~l~~n~l~~~-~~-~-~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l 264 (347)
T 4fmz_A 194 -P-LASLTSLHYFTAYVNQITDI-TP-V-ANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVKDL 264 (347)
T ss_dssp -G-GGGCTTCCEEECCSSCCCCC-GG-G-GGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTC
T ss_pred -c-ccCCCccceeecccCCCCCC-ch-h-hcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hhHhcC
Confidence 3 88899999999999999844 33 3 378999999999999985443 88999999999999999864 458899
Q ss_pred CCCCEEEccCCCCcccCCCchhhHhhhcCCCCCCEEEccCCcCcccCChhHhhhccCCCEEeccCCcCeecCchhhhcCC
Q 040495 314 KNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNRISGTIPPGIRSHA 393 (443)
Q Consensus 314 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~ 393 (443)
++|+.|++++|.+++. ..+..+++|++|++++|++++..|..+..+ ++|+.|++++|++++..| +..++
T Consensus 265 ~~L~~L~l~~n~l~~~--------~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l-~~L~~L~L~~n~l~~~~~--~~~l~ 333 (347)
T 4fmz_A 265 TKLKMLNVGSNQISDI--------SVLNNLSQLNSLFLNNNQLGNEDMEVIGGL-TNLTTLFLSQNHITDIRP--LASLS 333 (347)
T ss_dssp TTCCEEECCSSCCCCC--------GGGGGCTTCSEEECCSSCCCGGGHHHHHTC-TTCSEEECCSSSCCCCGG--GGGCT
T ss_pred CCcCEEEccCCccCCC--------hhhcCCCCCCEEECcCCcCCCcChhHhhcc-ccCCEEEccCCccccccC--hhhhh
Confidence 9999999999999875 237889999999999999998878878774 899999999999997655 88999
Q ss_pred CCCeEeCcCCcCc
Q 040495 394 NLNWLTMDSNLFT 406 (443)
Q Consensus 394 ~L~~L~L~~n~~~ 406 (443)
+|++|++++|.++
T Consensus 334 ~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 334 KMDSADFANQVIK 346 (347)
T ss_dssp TCSEESSSCC---
T ss_pred ccceeehhhhccc
Confidence 9999999999986
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-33 Score=275.87 Aligned_cols=315 Identities=25% Similarity=0.307 Sum_probs=164.6
Q ss_pred CcEEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCCCCCchhhcCCCccCeEEccCCCCCCCCChhhhcCCCCceeec
Q 040495 74 QRVTRLDLRNQSIGGPLSPYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSV 153 (443)
Q Consensus 74 ~~v~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l 153 (443)
.+++.|++++|.+++ +|.. +++|++|++++|.+++ ++.. .++|++|++++|.+++ +| .+.++++|++|++
T Consensus 91 ~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l 160 (454)
T 1jl5_A 91 PHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDV 160 (454)
T ss_dssp TTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEEC
T ss_pred CCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEEC
Confidence 456677777777665 4432 3566666666666553 2211 1456666666666663 55 3666666666666
Q ss_pred cCCcccccCCccccCCcCccEeeeeccccCccCCccccCCCCCCEEEccCCcCCcccccccCCCCCCEEEcccccCCCCC
Q 040495 154 DTNYLVGEIPSAIGSLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLRLLDIAFNHFSGMI 233 (443)
Q Consensus 154 ~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~~~~~~ 233 (443)
++|++++ +|..+ .+|++|++++|.+++ +| .+.++++|++|++++|.+.+.... .++|++|++++|.+. .+
T Consensus 161 ~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~l~~~---~~~L~~L~l~~n~l~-~l 230 (454)
T 1jl5_A 161 DNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKKLPDL---PLSLESIVAGNNILE-EL 230 (454)
T ss_dssp CSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSSCCCC---CTTCCEEECCSSCCS-SC
T ss_pred CCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCcCCCC---cCcccEEECcCCcCC-cc
Confidence 6666653 44332 366666666666664 34 456666666666666665543321 135666666666655 34
Q ss_pred CccccCCCCCcEEEcccCcCcccCChhhhcCCCCCcEEeCCCCcCCccCCccCcCCCCCCEEecccCcCcc--ccchh--
Q 040495 234 PPPIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSG--RVSVD-- 309 (443)
Q Consensus 234 ~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~--~~~~~-- 309 (443)
| .+..+++|++|++++|.++ .+|. .+++|++|++++|++++ +|.. +++|++|++++|++++ ..|..
T Consensus 231 p-~~~~l~~L~~L~l~~N~l~-~l~~----~~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l~~~~~~L~ 300 (454)
T 1jl5_A 231 P-ELQNLPFLTTIYADNNLLK-TLPD----LPPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSGLSELPPNLY 300 (454)
T ss_dssp C-CCTTCTTCCEEECCSSCCS-SCCS----CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSEESCCCTTCC
T ss_pred c-ccCCCCCCCEEECCCCcCC-cccc----cccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCcccCcCCcCC
Confidence 4 2555666666666666655 2432 23455555555555553 3322 2344555555554443 11111
Q ss_pred -----------hhCC-CCCCEEEccCCCCcccCCCchhhHhhhcCCCCCCEEEccCCcCcccCChhHhhhccCCCEEecc
Q 040495 310 -----------FSRL-KNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMG 377 (443)
Q Consensus 310 -----------~~~l-~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~L~ 377 (443)
+..+ ++|+.|++++|.+++... .+++|++|++++|+++ .+|. .+++|+.|+++
T Consensus 301 ~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~lp~----------~~~~L~~L~L~~N~l~-~lp~----~l~~L~~L~L~ 365 (454)
T 1jl5_A 301 YLNASSNEIRSLCDLPPSLEELNVSNNKLIELPA----------LPPRLERLIASFNHLA-EVPE----LPQNLKQLHVE 365 (454)
T ss_dssp EEECCSSCCSEECCCCTTCCEEECCSSCCSCCCC----------CCTTCCEEECCSSCCS-CCCC----CCTTCCEEECC
T ss_pred EEECcCCcCCcccCCcCcCCEEECCCCccccccc----------cCCcCCEEECCCCccc-cccc----hhhhccEEECC
Confidence 1123 478888888888876432 2589999999999999 6777 25799999999
Q ss_pred CCcCee--cCchhhhcC-------------CCCCeEeCcCCcCcc--cCchhhcCCCCCCEEEccCCcCcccCCccccC
Q 040495 378 RNRISG--TIPPGIRSH-------------ANLNWLTMDSNLFTG--TIPPVIGELKNLQLLDLGGNFLQGSIPSSLGN 439 (443)
Q Consensus 378 ~n~l~~--~~p~~l~~~-------------~~L~~L~L~~n~~~~--~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~ 439 (443)
+|++++ .+|.++..+ ++|++|++++|++++ .+|. +++.|.+.+|.+.+.+|.+...
T Consensus 366 ~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP~------sl~~L~~~~~~~~~~~~~~~~~ 438 (454)
T 1jl5_A 366 YNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPE------SVEDLRMNSERVVDPYEFAHET 438 (454)
T ss_dssp SSCCSSCCCCCTTCCEEECCC----------------------------------------------------------
T ss_pred CCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCccccchh------hHhheeCcCcccCCccccCHHH
Confidence 999998 788888877 889999999999996 6664 4677889999999888765543
|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-33 Score=289.40 Aligned_cols=351 Identities=18% Similarity=0.181 Sum_probs=272.3
Q ss_pred CcEEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCCCCCchhhcCCCccCeEEccCCCCCCCCChhhhcCCCCceeec
Q 040495 74 QRVTRLDLRNQSIGGPLSPYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSV 153 (443)
Q Consensus 74 ~~v~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l 153 (443)
.+++.|+|++|.+++..+.+|.++++|++|+|++|.+++..+..|.++++|++|++++|.+++..+..|+++++|++|++
T Consensus 76 ~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~L 155 (635)
T 4g8a_A 76 PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNV 155 (635)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEEC
T ss_pred CCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeecc
Confidence 57999999999999888888999999999999999999777788999999999999999999777778999999999999
Q ss_pred cCCcccc-cCCccccCCcCccEeeeeccccCccCCccccCCCCC---------------------------CEEEccCCc
Q 040495 154 DTNYLVG-EIPSAIGSLFKLERLFIFHNHITGQLPASIGNLSSL---------------------------LAFDVRENI 205 (443)
Q Consensus 154 ~~n~l~~-~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L---------------------------~~L~l~~n~ 205 (443)
++|.+++ ..|..++.+++|++|++++|.+++..+..+..+.++ +.+++.+|.
T Consensus 156 s~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~ 235 (635)
T 4g8a_A 156 AHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNF 235 (635)
T ss_dssp CSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCC
T ss_pred ccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhccc
Confidence 9999975 467888999999999999999886655544322211 112222110
Q ss_pred CCc-----------------------------------------------------------------------------
Q 040495 206 LWG----------------------------------------------------------------------------- 208 (443)
Q Consensus 206 l~~----------------------------------------------------------------------------- 208 (443)
...
T Consensus 236 ~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~ 315 (635)
T 4g8a_A 236 DSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVS 315 (635)
T ss_dssp SSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEES
T ss_pred ccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccc
Confidence 000
Q ss_pred ----ccccccCCCCCCEEEcccccCCCCCC-------------------ccccCCCCCcEEEcccCcCcc--cCChhh--
Q 040495 209 ----RIDSLVQLRNLRLLDIAFNHFSGMIP-------------------PPIFNISSLEVISLSENRFTG--SLPVDA-- 261 (443)
Q Consensus 209 ----~~~~l~~l~~L~~L~l~~n~~~~~~~-------------------~~l~~l~~L~~L~l~~n~l~~--~~~~~~-- 261 (443)
....+.....++.|++.+|.+.+..+ .....+++|+.+++++|.+.. ..+...
T Consensus 316 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~ 395 (635)
T 4g8a_A 316 VTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFG 395 (635)
T ss_dssp CEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHS
T ss_pred cccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccccccccccchhhccccccccccccchhh
Confidence 00011223356666666665443211 122346778888888876642 122111
Q ss_pred --------------------hcCCCCCcEEeCCCCcCCccC-CccCcCCCCCCEEecccCcCccccchhhhCCCCCCEEE
Q 040495 262 --------------------GVNLPNLRQLSPNGNNFTGSI-PVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLN 320 (443)
Q Consensus 262 --------------------~~~~~~L~~L~L~~n~l~~~~-~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 320 (443)
+..+++|+.+++..++..... +..+..+++++.++++.|.+.+..+..+..++.++.|+
T Consensus 396 ~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~ 475 (635)
T 4g8a_A 396 TISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLK 475 (635)
T ss_dssp CSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEE
T ss_pred hhhhhhhhccccccccccccccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhh
Confidence 124567777777777655443 35578899999999999999999999999999999999
Q ss_pred ccCCCCcc-cCCCchhhHhhhcCCCCCCEEEccCCcCcccCChhHhhhccCCCEEeccCCcCeecCchhhhcCCCCCeEe
Q 040495 321 MGINNLGT-RTANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNRISGTIPPGIRSHANLNWLT 399 (443)
Q Consensus 321 l~~n~l~~-~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~ 399 (443)
+++|.+.. ..+ ..+..+++|++|++++|++++..|..+..+ ++|+.|+|++|++++..|..+..+++|++|+
T Consensus 476 Ls~N~~~~~~~~------~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l-~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~ 548 (635)
T 4g8a_A 476 MAGNSFQENFLP------DIFTELRNLTFLDLSQCQLEQLSPTAFNSL-SSLQVLNMSHNNFFSLDTFPYKCLNSLQVLD 548 (635)
T ss_dssp CTTCEEGGGEEC------SCCTTCTTCCEEECTTSCCCEECTTTTTTC-TTCCEEECTTSCCCBCCCGGGTTCTTCCEEE
T ss_pred hhhcccccccCc------hhhhhccccCEEECCCCccCCcChHHHcCC-CCCCEEECCCCcCCCCChhHHhCCCCCCEEE
Confidence 99997544 444 568899999999999999998778877775 8999999999999988888899999999999
Q ss_pred CcCCcCcccCchhhcCC-CCCCEEEccCCcCcc
Q 040495 400 MDSNLFTGTIPPVIGEL-KNLQLLDLGGNFLQG 431 (443)
Q Consensus 400 L~~n~~~~~~p~~~~~l-~~L~~L~l~~n~l~~ 431 (443)
|++|++++..|+.+..+ ++|++|++++|++..
T Consensus 549 Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C 581 (635)
T 4g8a_A 549 YSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 581 (635)
T ss_dssp CTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCC
T ss_pred CCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcc
Confidence 99999999899999888 689999999999874
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-36 Score=299.59 Aligned_cols=355 Identities=17% Similarity=0.182 Sum_probs=254.4
Q ss_pred CcEEEEEcCCCCCcccccc-cccCCCCCCEEeCCCCcCCC----CCchhhcCCCccCeEEccCCCCCCCCChhhh-cCC-
Q 040495 74 QRVTRLDLRNQSIGGPLSP-YVGNLSFLRYINLANNGFLG----EIPPQIGRLNMLEGLVLSNNSFSGTIPTNLS-RRS- 146 (443)
Q Consensus 74 ~~v~~L~l~~~~~~~~~~~-~~~~l~~L~~L~L~~n~~~~----~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~-~l~- 146 (443)
.++++|+++++.++..... .+..+++|++|++++|.+++ .++..+..+++|++|++++|.+.+..+..+. .++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 4678888888887654333 36778889999999888774 3566777888899999988888755444443 355
Q ss_pred ---CCceeeccCCcccc----cCCccccCCcCccEeeeeccccCccCCcccc-----CCCCCCEEEccCCcCCccc----
Q 040495 147 ---NLIELSVDTNYLVG----EIPSAIGSLFKLERLFIFHNHITGQLPASIG-----NLSSLLAFDVRENILWGRI---- 210 (443)
Q Consensus 147 ---~L~~L~l~~n~l~~----~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~-----~l~~L~~L~l~~n~l~~~~---- 210 (443)
+|++|++++|.++. .++..+..+++|++|++++|.+++..+..+. ..++|++|++++|.++...
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l 162 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL 162 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence 68899999888873 4577788888899999988887754443332 2567889999888877643
Q ss_pred -ccccCCCCCCEEEcccccCCCCCCcccc-----CCCCCcEEEcccCcCccc----CChhhhcCCCCCcEEeCCCCcCCc
Q 040495 211 -DSLVQLRNLRLLDIAFNHFSGMIPPPIF-----NISSLEVISLSENRFTGS----LPVDAGVNLPNLRQLSPNGNNFTG 280 (443)
Q Consensus 211 -~~l~~l~~L~~L~l~~n~~~~~~~~~l~-----~l~~L~~L~l~~n~l~~~----~~~~~~~~~~~L~~L~L~~n~l~~ 280 (443)
..+..+++|++|++++|.+.+..+..+. ..++|++|++++|.+++. ++..+. .+++|++|++++|.+++
T Consensus 163 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~-~~~~L~~L~Ls~n~l~~ 241 (461)
T 1z7x_W 163 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVA-SKASLRELALGSNKLGD 241 (461)
T ss_dssp HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHH-HCTTCCEEECCSSBCHH
T ss_pred HHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHH-hCCCccEEeccCCcCCh
Confidence 3455678888899888887654333332 256888888888888743 344444 67888888888888765
Q ss_pred cC-----CccCcCCCCCCEEecccCcCccc----cchhhhCCCCCCEEEccCCCCcccCCCchhhHhhh-cCCCCCCEEE
Q 040495 281 SI-----PVSLSNASRLEMIEFSRNQFSGR----VSVDFSRLKNLSFLNMGINNLGTRTANELDFINLL-ANCSKLERLY 350 (443)
Q Consensus 281 ~~-----~~~l~~~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~-~~~~~L~~L~ 350 (443)
.. +..+..+++|++|++++|.+++. ++..+..+++|++|++++|.+++..+..+ ...+ ...++|++|+
T Consensus 242 ~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l--~~~l~~~~~~L~~L~ 319 (461)
T 1z7x_W 242 VGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLL--CETLLEPGCQLESLW 319 (461)
T ss_dssp HHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHH--HHHHTSTTCCCCEEE
T ss_pred HHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHH--HHHhccCCccceeeE
Confidence 32 22334578888888888888864 45567778888888888888765443111 1222 2336888888
Q ss_pred ccCCcCccc----CChhHhhhccCCCEEeccCCcCeecCchhhhc-----CCCCCeEeCcCCcCcc----cCchhhcCCC
Q 040495 351 FNRNRFQGV----LPQSMANFSSTIKQIAMGRNRISGTIPPGIRS-----HANLNWLTMDSNLFTG----TIPPVIGELK 417 (443)
Q Consensus 351 l~~n~l~~~----~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~-----~~~L~~L~L~~n~~~~----~~p~~~~~l~ 417 (443)
+++|.+++. ++..+.. .++|+.|++++|++++..+..+.. .++|++|++++|.+++ .+|..+..++
T Consensus 320 L~~n~l~~~~~~~l~~~l~~-~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~ 398 (461)
T 1z7x_W 320 VKSCSFTAACCSHFSSVLAQ-NRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANH 398 (461)
T ss_dssp CTTSCCBGGGHHHHHHHHHH-CSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCC
T ss_pred cCCCCCchHHHHHHHHHHhh-CCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCC
Confidence 888888765 3444444 378888888888888765555543 6788888888888885 6788888888
Q ss_pred CCCEEEccCCcCccc
Q 040495 418 NLQLLDLGGNFLQGS 432 (443)
Q Consensus 418 ~L~~L~l~~n~l~~~ 432 (443)
+|++|++++|++++.
T Consensus 399 ~L~~L~l~~N~i~~~ 413 (461)
T 1z7x_W 399 SLRELDLSNNCLGDA 413 (461)
T ss_dssp CCCEEECCSSSCCHH
T ss_pred CccEEECCCCCCCHH
Confidence 888888888888754
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-34 Score=266.19 Aligned_cols=252 Identities=27% Similarity=0.450 Sum_probs=159.9
Q ss_pred CCCceeeccCCcccc--cCCccccCCcCccEeeeec-cccCccCCccccCCCCCCEEEccCCcCCcccccccCCCCCCEE
Q 040495 146 SNLIELSVDTNYLVG--EIPSAIGSLFKLERLFIFH-NHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLRLL 222 (443)
Q Consensus 146 ~~L~~L~l~~n~l~~--~~p~~l~~l~~L~~L~l~~-n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~l~~l~~L~~L 222 (443)
.++++|++++|.+.+ .+|..++++++|++|++++ |.+.+.+|..+.++++|++|++++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~------------------- 110 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITH------------------- 110 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEE-------------------
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcC-------------------
Confidence 356666666666665 5666666666666666663 566555565555555555555554
Q ss_pred EcccccCCCCCCccccCCCCCcEEEcccCcCcccCChhhhcCCCCCcEEeCCCCcCCccCCccCcCCC-CCCEEecccCc
Q 040495 223 DIAFNHFSGMIPPPIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNAS-RLEMIEFSRNQ 301 (443)
Q Consensus 223 ~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~-~L~~L~l~~n~ 301 (443)
|.+.+.+|..+.++++|++|++++|.+++.+|..+. .+++|++|++++|++++.+|..+..++ +|++|++++|+
T Consensus 111 ----n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~-~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~ 185 (313)
T 1ogq_A 111 ----TNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS-SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNR 185 (313)
T ss_dssp ----ECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGG-GCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSE
T ss_pred ----CeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHh-cCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCe
Confidence 444444455555555555555555555555554444 455555555555555555555555555 56666666666
Q ss_pred CccccchhhhCCCCCCEEEccCCCCcccCCCchhhHhhhcCCCCCCEEEccCCcCcccCChhHhhhccCCCEEeccCCcC
Q 040495 302 FSGRVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNRI 381 (443)
Q Consensus 302 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l 381 (443)
+++..|..+..++ |+.|++++|.+++..+ ..+..+++|++|++++|++++.+|. +.. .++|+.|++++|++
T Consensus 186 l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~------~~~~~l~~L~~L~L~~N~l~~~~~~-~~~-l~~L~~L~Ls~N~l 256 (313)
T 1ogq_A 186 LTGKIPPTFANLN-LAFVDLSRNMLEGDAS------VLFGSDKNTQKIHLAKNSLAFDLGK-VGL-SKNLNGLDLRNNRI 256 (313)
T ss_dssp EEEECCGGGGGCC-CSEEECCSSEEEECCG------GGCCTTSCCSEEECCSSEECCBGGG-CCC-CTTCCEEECCSSCC
T ss_pred eeccCChHHhCCc-ccEEECcCCcccCcCC------HHHhcCCCCCEEECCCCceeeecCc-ccc-cCCCCEEECcCCcc
Confidence 6666666565555 6666666666665544 4556666777777777777655544 333 36788888888888
Q ss_pred eecCchhhhcCCCCCeEeCcCCcCcccCchhhcCCCCCCEEEccCCc-Ccc
Q 040495 382 SGTIPPGIRSHANLNWLTMDSNLFTGTIPPVIGELKNLQLLDLGGNF-LQG 431 (443)
Q Consensus 382 ~~~~p~~l~~~~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~-l~~ 431 (443)
++.+|..+..+++|++|++++|+++|.+|+. ..+++|+.+++++|+ +.|
T Consensus 257 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 257 YGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp EECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEES
T ss_pred cCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCccC
Confidence 8788888888888888888888888888876 677888888888887 555
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-32 Score=259.57 Aligned_cols=266 Identities=21% Similarity=0.266 Sum_probs=123.1
Q ss_pred ccCeEEccCCCCCCCCChhhhcCCCCceeeccCCcccccCCccccCCcCccEeeeeccccCccCCccccCCCCCCEEEcc
Q 040495 123 MLEGLVLSNNSFSGTIPTNLSRRSNLIELSVDTNYLVGEIPSAIGSLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVR 202 (443)
Q Consensus 123 ~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 202 (443)
+|++|++++|.+++..|..+.++++|++|++++|.+++..|..++.+++|++|++++|.++ .+|..+. ++|++|+++
T Consensus 55 ~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l~ 131 (332)
T 2ft3_A 55 DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRIH 131 (332)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCC--TTCCEEECC
T ss_pred CCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCcccc--ccCCEEECC
Confidence 4444444444444333334444444444444444444333444444444444444444444 2332222 334444444
Q ss_pred CCcCCccc-ccccCCCCCCEEEcccccCC--CCCCccccCCCCCcEEEcccCcCcccCChhhhcCCCCCcEEeCCCCcCC
Q 040495 203 ENILWGRI-DSLVQLRNLRLLDIAFNHFS--GMIPPPIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFT 279 (443)
Q Consensus 203 ~n~l~~~~-~~l~~l~~L~~L~l~~n~~~--~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~ 279 (443)
+|.+.... ..+..+++|++|++++|.+. +..+..+..+ +|++|++++|.++ .+|..+. ++|++|++++|.++
T Consensus 132 ~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~-~l~~~~~---~~L~~L~l~~n~i~ 206 (332)
T 2ft3_A 132 DNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT-GIPKDLP---ETLNELHLDHNKIQ 206 (332)
T ss_dssp SSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCS-SCCSSSC---SSCSCCBCCSSCCC
T ss_pred CCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCC-ccCcccc---CCCCEEECCCCcCC
Confidence 44333333 22344444444455444443 2333444444 5555555555554 3443321 45555555555555
Q ss_pred ccCCccCcCCCCCCEEecccCcCccccchhhhCCCCCCEEEccCCCCcccCCCchhhHhhhcCCCCCCEEEccCCcCccc
Q 040495 280 GSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGV 359 (443)
Q Consensus 280 ~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 359 (443)
+..+..+..+++|++|++++|++++..+..+..+++|+.|++++|.+ + .
T Consensus 207 ~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l------------------------------~-~ 255 (332)
T 2ft3_A 207 AIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKL------------------------------S-R 255 (332)
T ss_dssp CCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCC------------------------------C-B
T ss_pred ccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcC------------------------------e-e
Confidence 44444555555555555555555544444444444444444444444 4 3
Q ss_pred CChhHhhhccCCCEEeccCCcCeecCchhhhc------CCCCCeEeCcCCcCc--ccCchhhcCCCCCCEEEccCCc
Q 040495 360 LPQSMANFSSTIKQIAMGRNRISGTIPPGIRS------HANLNWLTMDSNLFT--GTIPPVIGELKNLQLLDLGGNF 428 (443)
Q Consensus 360 ~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~------~~~L~~L~L~~n~~~--~~~p~~~~~l~~L~~L~l~~n~ 428 (443)
+|..+..+ ++|+.|++++|++++..+..+.. ..+|+.+++++|++. +..|..+..+++|+.+++++|+
T Consensus 256 lp~~l~~l-~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 256 VPAGLPDL-KLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CCTTGGGC-TTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred cChhhhcC-ccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 44443332 44444444444444332222222 245666777777665 4455566667777777777664
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-32 Score=258.55 Aligned_cols=279 Identities=19% Similarity=0.239 Sum_probs=194.8
Q ss_pred ccCeEEccCCCCCCCCChhhhcCCCCceeeccCCcccccCCccccCCcCccEeeeeccccCccCCccccCCCCCCEEEcc
Q 040495 123 MLEGLVLSNNSFSGTIPTNLSRRSNLIELSVDTNYLVGEIPSAIGSLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVR 202 (443)
Q Consensus 123 ~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 202 (443)
+++.++++++.++ .+|..+. ++|++|++++|.+.+..|..+.++++|++|++++|.+++..|..+.++++|++|+++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred cCCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 5777777777776 5565542 577888888888776666677777788888887777776666666666666666666
Q ss_pred CCcCCcccccccCCCCCCEEEcccccCCCCCCccccCCCCCcEEEcccCcCcccCChhhhcCCCCCcEEeCCCCcCC--c
Q 040495 203 ENILWGRIDSLVQLRNLRLLDIAFNHFSGMIPPPIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFT--G 280 (443)
Q Consensus 203 ~n~l~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~--~ 280 (443)
+|.+...+. .+. ++|++|++++|.++ .+|...+..+++|++|++++|.++ +
T Consensus 111 ~n~l~~l~~------------------------~~~--~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~l~~n~l~~~~ 163 (332)
T 2ft3_A 111 KNHLVEIPP------------------------NLP--SSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSG 163 (332)
T ss_dssp SSCCCSCCS------------------------SCC--TTCCEEECCSSCCC-CCCSGGGSSCSSCCEEECCSCCCBGGG
T ss_pred CCcCCccCc------------------------ccc--ccCCEEECCCCccC-ccCHhHhCCCccCCEEECCCCccccCC
Confidence 665553332 222 44555555555554 333333335555556666555553 2
Q ss_pred cCCccCcCCCCCCEEecccCcCccccchhhhCCCCCCEEEccCCCCcccCCCchhhHhhhcCCCCCCEEEccCCcCcccC
Q 040495 281 SIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVL 360 (443)
Q Consensus 281 ~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 360 (443)
..+..+..+ +|++|++++|++++ +|..+. ++|+.|++++|.+++..+ ..+..+++|++|++++|++++..
T Consensus 164 ~~~~~~~~l-~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~------~~l~~l~~L~~L~L~~N~l~~~~ 233 (332)
T 2ft3_A 164 FEPGAFDGL-KLNYLRISEAKLTG-IPKDLP--ETLNELHLDHNKIQAIEL------EDLLRYSKLYRLGLGHNQIRMIE 233 (332)
T ss_dssp SCTTSSCSC-CCSCCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCCCCCCT------TSSTTCTTCSCCBCCSSCCCCCC
T ss_pred CCcccccCC-ccCEEECcCCCCCc-cCcccc--CCCCEEECCCCcCCccCH------HHhcCCCCCCEEECCCCcCCcCC
Confidence 445555555 67777777777665 333332 577788888887777665 45778888999999999998666
Q ss_pred ChhHhhhccCCCEEeccCCcCeecCchhhhcCCCCCeEeCcCCcCcccCchhhcC------CCCCCEEEccCCcCc--cc
Q 040495 361 PQSMANFSSTIKQIAMGRNRISGTIPPGIRSHANLNWLTMDSNLFTGTIPPVIGE------LKNLQLLDLGGNFLQ--GS 432 (443)
Q Consensus 361 p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~n~~~~~~p~~~~~------l~~L~~L~l~~n~l~--~~ 432 (443)
+..+.. .++|+.|++++|+++ .+|..+..+++|++|++++|.+++..+..+.. .++|+.|++++|++. +.
T Consensus 234 ~~~~~~-l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~ 311 (332)
T 2ft3_A 234 NGSLSF-LPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEV 311 (332)
T ss_dssp TTGGGG-CTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGS
T ss_pred hhHhhC-CCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCccccccc
Confidence 666666 489999999999999 88999999999999999999999665566654 367899999999987 55
Q ss_pred CCccccCCCCC
Q 040495 433 IPSSLGNLTLL 443 (443)
Q Consensus 433 ~p~~~~~l~~L 443 (443)
.|..|..++.|
T Consensus 312 ~~~~~~~l~~L 322 (332)
T 2ft3_A 312 QPATFRCVTDR 322 (332)
T ss_dssp CGGGGTTBCCS
T ss_pred Ccccccccchh
Confidence 66667766553
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-32 Score=255.86 Aligned_cols=288 Identities=22% Similarity=0.287 Sum_probs=174.9
Q ss_pred CCCEEeCCCCcCCCCCchhhcCCCccCeEEccCCCCCCCCChhhhcCCCCceeeccCCcccccCCccccCCcCccEeeee
Q 040495 99 FLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSVDTNYLVGEIPSAIGSLFKLERLFIF 178 (443)
Q Consensus 99 ~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~ 178 (443)
+++.++++++.++ .+|..+. +.+++|++++|.+++..+..+.++++|++|++++|.+++..|..++.+++|++|+++
T Consensus 32 ~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 6788888888877 5665443 578888888888887666678888888888888888887778888888888888888
Q ss_pred ccccCccCCccccCCCCCCEEEccCCcCCccc-ccccCCCCCCEEEcccccCCC--CCCccccCCCCCcEEEcccCcCcc
Q 040495 179 HNHITGQLPASIGNLSSLLAFDVRENILWGRI-DSLVQLRNLRLLDIAFNHFSG--MIPPPIFNISSLEVISLSENRFTG 255 (443)
Q Consensus 179 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~-~~l~~l~~L~~L~l~~n~~~~--~~~~~l~~l~~L~~L~l~~n~l~~ 255 (443)
+|.++ .+|..+. ++|++|++++|.+.+.. ..+..+++|++|++++|.+.. ..+..+..+++|++|++++|.++
T Consensus 109 ~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~- 184 (330)
T 1xku_A 109 KNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT- 184 (330)
T ss_dssp SSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-
T ss_pred CCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc-
Confidence 88877 4555443 56777777776666555 445666666666666666542 34445555555666666555555
Q ss_pred cCChhhhcCCCCCcEEeCCCCcCCccCCccCcCCCCCCEEecccCcCccccchhhhCCCCCCEEEccCCCCcccCCCchh
Q 040495 256 SLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANELD 335 (443)
Q Consensus 256 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 335 (443)
.+|..+ .++|++|++++|++++..|..+..+++|++|++++|.+++..+..+.
T Consensus 185 ~l~~~~---~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~------------------------ 237 (330)
T 1xku_A 185 TIPQGL---PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLA------------------------ 237 (330)
T ss_dssp SCCSSC---CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGG------------------------
T ss_pred cCCccc---cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhcc------------------------
Confidence 344332 14455555555555444444444444455555544444444443444
Q ss_pred hHhhhcCCCCCCEEEccCCcCcccCChhHhhhccCCCEEeccCCcCeecCchhhh------cCCCCCeEeCcCCcCcc--
Q 040495 336 FINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNRISGTIPPGIR------SHANLNWLTMDSNLFTG-- 407 (443)
Q Consensus 336 ~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~------~~~~L~~L~L~~n~~~~-- 407 (443)
.+++|++|++++|+++ .+|.++..+ ++|+.|++++|++++..+..+. ....++.+++++|++..
T Consensus 238 ------~l~~L~~L~L~~N~l~-~lp~~l~~l-~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~ 309 (330)
T 1xku_A 238 ------NTPHLRELHLNNNKLV-KVPGGLADH-KYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWE 309 (330)
T ss_dssp ------GSTTCCEEECCSSCCS-SCCTTTTTC-SSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGG
T ss_pred ------CCCCCCEEECCCCcCc-cCChhhccC-CCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccc
Confidence 4455555555555554 444444442 4555555555555533333332 23567777777777652
Q ss_pred cCchhhcCCCCCCEEEccCCc
Q 040495 408 TIPPVIGELKNLQLLDLGGNF 428 (443)
Q Consensus 408 ~~p~~~~~l~~L~~L~l~~n~ 428 (443)
..|..+..+.+++.+++++|+
T Consensus 310 i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 310 IQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp SCGGGGTTCCCGGGEEC----
T ss_pred cCccccccccceeEEEecccC
Confidence 345567777777888887774
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-32 Score=255.37 Aligned_cols=271 Identities=19% Similarity=0.219 Sum_probs=221.7
Q ss_pred EEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCCCCCchhhcCCCccCeEEccCCCCCCCCChhhhcCCCCceeeccC
Q 040495 76 VTRLDLRNQSIGGPLSPYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSVDT 155 (443)
Q Consensus 76 v~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~ 155 (443)
++.++++++.+.. +|..+ .+++++|++++|.+++..+..++++++|++|++++|.+++..|..+.++++|++|++++
T Consensus 33 l~~l~~~~~~l~~-lp~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 109 (330)
T 1xku_A 33 LRVVQCSDLGLEK-VPKDL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK 109 (330)
T ss_dssp TTEEECTTSCCCS-CCCSC--CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CeEEEecCCCccc-cCccC--CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCC
Confidence 4466777776653 45433 36899999999999987777899999999999999999988899999999999999999
Q ss_pred CcccccCCccccCCcCccEeeeeccccCccCCccccCCCCCCEEEccCCcCCc--cc-ccccCCCCCCEEEcccccCCCC
Q 040495 156 NYLVGEIPSAIGSLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWG--RI-DSLVQLRNLRLLDIAFNHFSGM 232 (443)
Q Consensus 156 n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~--~~-~~l~~l~~L~~L~l~~n~~~~~ 232 (443)
|.++ .+|..+. ++|++|++++|.+++..+..+.++++|++|++++|.+.. .. ..+..+++|++|++++|.+..
T Consensus 110 n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~- 185 (330)
T 1xku_A 110 NQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT- 185 (330)
T ss_dssp SCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-
T ss_pred CcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc-
Confidence 9998 6776554 799999999999998777789999999999999998864 33 678889999999999999984
Q ss_pred CCccccCCCCCcEEEcccCcCcccCChhhhcCCCCCcEEeCCCCcCCccCCccCcCCCCCCEEecccCcCccccchhhhC
Q 040495 233 IPPPIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSR 312 (443)
Q Consensus 233 ~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~ 312 (443)
+|..+. ++|++|++++|.+++..|..+. .+++|++|++++|.+++..+..+..+++|++|++++|+++ .+|..+..
T Consensus 186 l~~~~~--~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~ 261 (330)
T 1xku_A 186 IPQGLP--PSLTELHLDGNKITKVDAASLK-GLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLAD 261 (330)
T ss_dssp CCSSCC--TTCSEEECTTSCCCEECTGGGT-TCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTT
T ss_pred CCcccc--ccCCEEECCCCcCCccCHHHhc-CCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhcc
Confidence 555544 7999999999999965555555 8999999999999999887878999999999999999999 67777889
Q ss_pred CCCCCEEEccCCCCcccCCCchhhHhhhcCCCCCCEEEccCCcCc
Q 040495 313 LKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQ 357 (443)
Q Consensus 313 l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 357 (443)
+++|++|++++|.+++..+..+..........+++.|++++|++.
T Consensus 262 l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~ 306 (330)
T 1xku_A 262 HKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 306 (330)
T ss_dssp CSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred CCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCccc
Confidence 999999999999998876632211111112345566666666554
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-34 Score=285.48 Aligned_cols=360 Identities=15% Similarity=0.103 Sum_probs=283.1
Q ss_pred CcEEEEEcCCCCCcc----cccccccCCCCCCEEeCCCCcCCCCCchhhc-CCC----ccCeEEccCCCCCC----CCCh
Q 040495 74 QRVTRLDLRNQSIGG----PLSPYVGNLSFLRYINLANNGFLGEIPPQIG-RLN----MLEGLVLSNNSFSG----TIPT 140 (443)
Q Consensus 74 ~~v~~L~l~~~~~~~----~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~-~l~----~L~~L~l~~n~~~~----~~p~ 140 (443)
.+++.|+++++.+.+ .++..+..+++|++|++++|.+.+..+..+. .++ +|++|++++|.++. .++.
T Consensus 28 ~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~ 107 (461)
T 1z7x_W 28 QQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSS 107 (461)
T ss_dssp TTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHH
T ss_pred CCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHH
Confidence 468899999999875 3566788899999999999998765444443 455 79999999999984 4588
Q ss_pred hhhcCCCCceeeccCCcccccCCccc-----cCCcCccEeeeeccccCccC----CccccCCCCCCEEEccCCcCCccc-
Q 040495 141 NLSRRSNLIELSVDTNYLVGEIPSAI-----GSLFKLERLFIFHNHITGQL----PASIGNLSSLLAFDVRENILWGRI- 210 (443)
Q Consensus 141 ~l~~l~~L~~L~l~~n~l~~~~p~~l-----~~l~~L~~L~l~~n~l~~~~----~~~l~~l~~L~~L~l~~n~l~~~~- 210 (443)
.+..+++|++|++++|.+++..+..+ ...++|++|++++|.+++.. +..+..+++|++|++++|.+....
T Consensus 108 ~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~ 187 (461)
T 1z7x_W 108 TLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGV 187 (461)
T ss_dssp HTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHH
T ss_pred HHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHH
Confidence 88999999999999999875444333 23568999999999998643 556677899999999999886543
Q ss_pred cccc-----CCCCCCEEEcccccCCCC----CCccccCCCCCcEEEcccCcCcccC----ChhhhcCCCCCcEEeCCCCc
Q 040495 211 DSLV-----QLRNLRLLDIAFNHFSGM----IPPPIFNISSLEVISLSENRFTGSL----PVDAGVNLPNLRQLSPNGNN 277 (443)
Q Consensus 211 ~~l~-----~l~~L~~L~l~~n~~~~~----~~~~l~~l~~L~~L~l~~n~l~~~~----~~~~~~~~~~L~~L~L~~n~ 277 (443)
..+. ..++|++|++++|.+++. ++..+..+++|++|++++|.+++.. ...+...+++|++|++++|+
T Consensus 188 ~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~ 267 (461)
T 1z7x_W 188 RVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECG 267 (461)
T ss_dssp HHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred HHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCC
Confidence 3332 356999999999999864 4667778899999999999987432 22333357899999999999
Q ss_pred CCcc----CCccCcCCCCCCEEecccCcCccccchhhhC-----CCCCCEEEccCCCCcccCCCchhhHhhhcCCCCCCE
Q 040495 278 FTGS----IPVSLSNASRLEMIEFSRNQFSGRVSVDFSR-----LKNLSFLNMGINNLGTRTANELDFINLLANCSKLER 348 (443)
Q Consensus 278 l~~~----~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~-----l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~L~~ 348 (443)
+++. ++..+..+++|++|++++|.+++..+..+.. .++|+.|++++|.+++.... .+...+..+++|++
T Consensus 268 l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~--~l~~~l~~~~~L~~ 345 (461)
T 1z7x_W 268 ITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCS--HFSSVLAQNRFLLE 345 (461)
T ss_dssp CCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHH--HHHHHHHHCSSCCE
T ss_pred CCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHH--HHHHHHhhCCCccE
Confidence 9864 6777888999999999999998765554433 37999999999998876432 23366788899999
Q ss_pred EEccCCcCcccCChhHhhh----ccCCCEEeccCCcCee----cCchhhhcCCCCCeEeCcCCcCcccCchhhc-----C
Q 040495 349 LYFNRNRFQGVLPQSMANF----SSTIKQIAMGRNRISG----TIPPGIRSHANLNWLTMDSNLFTGTIPPVIG-----E 415 (443)
Q Consensus 349 L~l~~n~l~~~~p~~~~~~----~~~L~~L~L~~n~l~~----~~p~~l~~~~~L~~L~L~~n~~~~~~p~~~~-----~ 415 (443)
|++++|++++..+..+... .++|+.|++++|++++ .+|..+..+++|++|++++|++++.-...+. .
T Consensus 346 L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~ 425 (461)
T 1z7x_W 346 LQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQP 425 (461)
T ss_dssp EECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTST
T ss_pred EEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccC
Confidence 9999999987666655542 3689999999999997 6888999999999999999999855322222 2
Q ss_pred CCCCCEEEccCCcCcccCCc
Q 040495 416 LKNLQLLDLGGNFLQGSIPS 435 (443)
Q Consensus 416 l~~L~~L~l~~n~l~~~~p~ 435 (443)
..+|+.|++.++.+....++
T Consensus 426 ~~~L~~L~~~~~~~~~~~~~ 445 (461)
T 1z7x_W 426 GCLLEQLVLYDIYWSEEMED 445 (461)
T ss_dssp TCCCCEEECTTCCCCHHHHH
T ss_pred CcchhheeecccccCHHHHH
Confidence 45799999999888755444
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=1e-30 Score=249.16 Aligned_cols=285 Identities=16% Similarity=0.178 Sum_probs=205.9
Q ss_pred CCCCCCCCCccceeeCCCCCcEEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCCCCCchhhcCCCccCeEEccCCCC
Q 040495 55 WNNSMSLCQWTGVTCGRRHQRVTRLDLRNQSIGGPLSPYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSF 134 (443)
Q Consensus 55 w~~~~~~c~w~gv~c~~~~~~v~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~ 134 (443)
|......|.|.++ |+ .+++.++. +|..+. ++|++|++++|.+++..+..+.++++|++|++++|.+
T Consensus 23 ~~~~~~~C~~~~~-c~----------~~~~~l~~-iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l 88 (353)
T 2z80_A 23 SNQASLSCDRNGI-CK----------GSSGSLNS-IPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGI 88 (353)
T ss_dssp ----CCEECTTSE-EE----------CCSTTCSS-CCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred CCccCCCCCCCeE-ee----------CCCCCccc-cccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCcc
Confidence 3333456888775 53 34555543 444333 5899999999998876666889999999999999999
Q ss_pred CCCCChhhhcCCCCceeeccCCcccccCCccccCCcCccEeeeeccccCccCC-ccccCCCCCCEEEccCCc-CCccc-c
Q 040495 135 SGTIPTNLSRRSNLIELSVDTNYLVGEIPSAIGSLFKLERLFIFHNHITGQLP-ASIGNLSSLLAFDVRENI-LWGRI-D 211 (443)
Q Consensus 135 ~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~-l~~~~-~ 211 (443)
++..|..+.++++|++|++++|.+++..+..++.+++|++|++++|.+++..+ ..+..+++|++|++++|. +.... .
T Consensus 89 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~ 168 (353)
T 2z80_A 89 NTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRK 168 (353)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTT
T ss_pred CccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHH
Confidence 87778888899999999999999885444448889999999999998884333 367888999999998884 55554 6
Q ss_pred cccCCCCCCEEEcccccCCCCCCccccCCCCCcEEEcccCcCcccCChhhhcCCCCCcEEeCCCCcCCccCCccC---cC
Q 040495 212 SLVQLRNLRLLDIAFNHFSGMIPPPIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSL---SN 288 (443)
Q Consensus 212 ~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l---~~ 288 (443)
.+..+++|++|++++|.+.+..|..+..+++|++|++++|.++ .+|......+++|++|++++|.+++..+..+ ..
T Consensus 169 ~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~ 247 (353)
T 2z80_A 169 DFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGET 247 (353)
T ss_dssp TTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCST-THHHHHHHHTTTEEEEEEESCBCTTCCCC------C
T ss_pred HccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccc-cchhhhhhhcccccEEECCCCccccccccccccccc
Confidence 7788889999999999988888888888999999999999886 6676665568889999999988876544332 23
Q ss_pred CCCCCEEecccCcCcc----ccchhhhCCCCCCEEEccCCCCcccCCCchhhHhhhcCCCCCCEEEccCCcCcccC
Q 040495 289 ASRLEMIEFSRNQFSG----RVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVL 360 (443)
Q Consensus 289 ~~~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 360 (443)
...++.++++++.+++ .+|..+..+++|+.|++++|.++.... ..+..+++|++|++++|++.+..
T Consensus 248 ~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~------~~~~~l~~L~~L~L~~N~~~~~~ 317 (353)
T 2z80_A 248 NSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPD------GIFDRLTSLQKIWLHTNPWDCSC 317 (353)
T ss_dssp CCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCT------TTTTTCTTCCEEECCSSCBCCCH
T ss_pred cchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCH------HHHhcCCCCCEEEeeCCCccCcC
Confidence 4566677777776665 245556666666666666666664333 33456666666666666666443
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.97 E-value=1e-29 Score=237.40 Aligned_cols=249 Identities=18% Similarity=0.210 Sum_probs=130.3
Q ss_pred CEEeCCCCcCCCCCchhhcCCCccCeEEccCCCCCCCCChhhhcCCCCceeeccCCcccc--cCCccccCCcCccEeeee
Q 040495 101 RYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSVDTNYLVG--EIPSAIGSLFKLERLFIF 178 (443)
Q Consensus 101 ~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~--~~p~~l~~l~~L~~L~l~ 178 (443)
+.++++++.++ .+|..+. ++|++|++++|.++...+..+.++++|++|++++|.++. ..+..+..+++|++|+++
T Consensus 10 ~~l~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls 86 (306)
T 2z66_A 10 TEIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86 (306)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred CEEEcCCCCcc-cCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence 45666666665 4554332 467777777777763333345666777777777766652 224444455666666666
Q ss_pred ccccCccCCccccCCCCCCEEEccCCcCCcccccccCCCCCCEEEcccccCCCCCC-ccccCCCCCcEEEcccCcCcccC
Q 040495 179 HNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLRLLDIAFNHFSGMIP-PPIFNISSLEVISLSENRFTGSL 257 (443)
Q Consensus 179 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~L~l~~n~l~~~~ 257 (443)
+|.++ .+|..+..+++|++|++++|.+.+.. + ..+..+++|++|++++|.+++..
T Consensus 87 ~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~-----------------------~~~~~~~l~~L~~L~l~~n~l~~~~ 142 (306)
T 2z66_A 87 FNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMS-----------------------EFSVFLSLRNLIYLDISHTHTRVAF 142 (306)
T ss_dssp SCSEE-EEEEEEETCTTCCEEECTTSEEESST-----------------------TTTTTTTCTTCCEEECTTSCCEECS
T ss_pred CCccc-cChhhcCCCCCCCEEECCCCcccccc-----------------------cchhhhhccCCCEEECCCCcCCccc
Confidence 66555 33444445555555555444443332 2 23444444555555555444333
Q ss_pred ChhhhcCCCCCcEEeCCCCcCCc-cCCccCcCCCCCCEEecccCcCccccchhhhCCCCCCEEEccCCCCcccCCCchhh
Q 040495 258 PVDAGVNLPNLRQLSPNGNNFTG-SIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANELDF 336 (443)
Q Consensus 258 ~~~~~~~~~~L~~L~L~~n~l~~-~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 336 (443)
+..+. .+++|++|++++|.+++ ..|..+..+++|++|++++|++++..+..+..+++|+.|++++|.+++..+
T Consensus 143 ~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~----- 216 (306)
T 2z66_A 143 NGIFN-GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDT----- 216 (306)
T ss_dssp TTTTT-TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCS-----
T ss_pred hhhcc-cCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccCh-----
Confidence 32222 44555555555555543 344455555555555555555555555555555555555555555555443
Q ss_pred HhhhcCCCCCCEEEccCCcCcccCChhHhhhccCCCEEeccCCcCee
Q 040495 337 INLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNRISG 383 (443)
Q Consensus 337 ~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~ 383 (443)
..+..+++|++|++++|++++..|..+..++++|+.|++++|++++
T Consensus 217 -~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~ 262 (306)
T 2z66_A 217 -FPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 262 (306)
T ss_dssp -GGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEEC
T ss_pred -hhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeec
Confidence 2344555555555555555554444444432355555555555554
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.7e-29 Score=234.56 Aligned_cols=285 Identities=21% Similarity=0.253 Sum_probs=186.2
Q ss_pred CCCccceeeCCCCCcEEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCCCCCchhhcCCCccCeEEccCCCCCCC--C
Q 040495 61 LCQWTGVTCGRRHQRVTRLDLRNQSIGGPLSPYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGT--I 138 (443)
Q Consensus 61 ~c~w~gv~c~~~~~~v~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~--~ 138 (443)
.|.|.++.|.. ++++. +|..+ .+++++|++++|.++...+..++++++|++|++++|.++.. .
T Consensus 6 ~C~~~~l~c~~------------~~l~~-ip~~~--~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~ 70 (306)
T 2z66_A 6 SCSGTEIRCNS------------KGLTS-VPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCC 70 (306)
T ss_dssp EEETTEEECCS------------SCCSS-CCSCC--CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEE
T ss_pred eeCCCEEEcCC------------CCccc-CCCCC--CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCc
Confidence 36777777754 33332 34322 36899999999999854455579999999999999999833 3
Q ss_pred ChhhhcCCCCceeeccCCcccccCCccccCCcCccEeeeeccccCccCC-ccccCCCCCCEEEccCCcCCcccccccCCC
Q 040495 139 PTNLSRRSNLIELSVDTNYLVGEIPSAIGSLFKLERLFIFHNHITGQLP-ASIGNLSSLLAFDVRENILWGRIDSLVQLR 217 (443)
Q Consensus 139 p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~l~~l~ 217 (443)
|..+..+++|++|++++|.+. .+|..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.+.
T Consensus 71 ~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-------- 141 (306)
T 2z66_A 71 SQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA-------- 141 (306)
T ss_dssp EHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEEC--------
T ss_pred ccccccccccCEEECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCcc--------
Confidence 778888999999999999998 678889999999999999999986544 4566666666666666655443
Q ss_pred CCCEEEcccccCCCCCCccccCCCCCcEEEcccCcCcc-cCChhhhcCCCCCcEEeCCCCcCCccCCccCcCCCCCCEEe
Q 040495 218 NLRLLDIAFNHFSGMIPPPIFNISSLEVISLSENRFTG-SLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIE 296 (443)
Q Consensus 218 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~ 296 (443)
.+..+..+++|++|++++|.+++ .+|..+. .+++|++|++++|++++..|..+..+++|++|+
T Consensus 142 ---------------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 205 (306)
T 2z66_A 142 ---------------FNGIFNGLSSLEVLKMAGNSFQENFLPDIFT-ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 205 (306)
T ss_dssp ---------------STTTTTTCTTCCEEECTTCEEGGGEECSCCT-TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred ---------------chhhcccCcCCCEEECCCCccccccchhHHh-hCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEE
Confidence 33444444555555555555443 2333322 455666666666666655555666666666666
Q ss_pred cccCcCccccchhhhCCCCCCEEEccCCCCcccCCCchhhHhhhcCC-CCCCEEEccCCcCcccCC-hhHhhhccCCCEE
Q 040495 297 FSRNQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANC-SKLERLYFNRNRFQGVLP-QSMANFSSTIKQI 374 (443)
Q Consensus 297 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~-~~L~~L~l~~n~l~~~~p-~~~~~~~~~L~~L 374 (443)
+++|++++..+..+..+++|+.|++++|.+++..+ ..+..+ ++|++|++++|++++.-+ .++..+....+.+
T Consensus 206 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~------~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~ 279 (306)
T 2z66_A 206 MSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKK------QELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQL 279 (306)
T ss_dssp CTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSS------SSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGG
T ss_pred CCCCccCccChhhccCcccCCEeECCCCCCcccCH------HHHHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhh
Confidence 66666666555556666777777777777666655 335555 367777777777764322 1222222334445
Q ss_pred eccCCcCeecCchhhhc
Q 040495 375 AMGRNRISGTIPPGIRS 391 (443)
Q Consensus 375 ~L~~n~l~~~~p~~l~~ 391 (443)
.+..+.+....|..+..
T Consensus 280 ~~~~~~~~C~~p~~~~g 296 (306)
T 2z66_A 280 LVEVERMECATPSDKQG 296 (306)
T ss_dssp BSCGGGCBEEESGGGTT
T ss_pred hccccccccCCchhhCC
Confidence 55556666566665544
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=5.6e-30 Score=244.07 Aligned_cols=288 Identities=17% Similarity=0.157 Sum_probs=184.8
Q ss_pred cCCCccCeEEccCCCCCCCCChhhhcCCCCceeeccCCcccccCCccccCCcCccEeeeeccccCccCCccccCCCCCCE
Q 040495 119 GRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSVDTNYLVGEIPSAIGSLFKLERLFIFHNHITGQLPASIGNLSSLLA 198 (443)
Q Consensus 119 ~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 198 (443)
..++.....+++++.++ .+|..+. ++|++|++++|.+++..+..+.++++|++|++++|.+++..+..+.++++|++
T Consensus 28 ~~C~~~~~c~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 104 (353)
T 2z80_A 28 LSCDRNGICKGSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEH 104 (353)
T ss_dssp CEECTTSEEECCSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred CCCCCCeEeeCCCCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCE
Confidence 34555667888888888 6776554 58999999999988665667888999999999999888777777888888888
Q ss_pred EEccCCcCCccc-ccccCCCCCCEEEcccccCCCCCC-ccccCCCCCcEEEcccCcCcccCChhhhcCCCCCcEEeCCCC
Q 040495 199 FDVRENILWGRI-DSLVQLRNLRLLDIAFNHFSGMIP-PPIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGN 276 (443)
Q Consensus 199 L~l~~n~l~~~~-~~l~~l~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n 276 (443)
|++++|.+++.. ..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|...+.++...+..+++|++|++++|
T Consensus 105 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n 184 (353)
T 2z80_A 105 LDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDAS 184 (353)
T ss_dssp EECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEET
T ss_pred EECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCC
Confidence 888888887766 447778888888888888774333 366777788888887774222444333336677777777777
Q ss_pred cCCccCCccCcCCCCCCEEecccCcCccccchhhhCCCCCCEEEccCCCCcccCCCchhhHhhhcCCCCCCEEEccCCcC
Q 040495 277 NFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRF 356 (443)
Q Consensus 277 ~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l 356 (443)
++++..|..+..+++|++|++++|++.......+..+++|+.|++++|.+++..+..+. .......++.++++++.+
T Consensus 185 ~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~---~~~~~~~l~~l~L~~~~l 261 (353)
T 2z80_A 185 DLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELS---TGETNSLIKKFTFRNVKI 261 (353)
T ss_dssp TCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC---------CCCCCCEEEEESCBC
T ss_pred CcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccc---cccccchhhccccccccc
Confidence 77766666777777777777777776543333344566666666666666654442211 122334444444444444
Q ss_pred cccCChhHhhhccCCCEEeccCCcCeecCchhhhcCCCCCeEeCcCCcCcccCchh-hcCCCCCCEEEccCCcCcccCC
Q 040495 357 QGVLPQSMANFSSTIKQIAMGRNRISGTIPPGIRSHANLNWLTMDSNLFTGTIPPV-IGELKNLQLLDLGGNFLQGSIP 434 (443)
Q Consensus 357 ~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~n~~~~~~p~~-~~~l~~L~~L~l~~n~l~~~~p 434 (443)
++. .+. .+|..+..+++|++|++++|+++ .+|.. +..+++|++|++++|++++..|
T Consensus 262 ~~~--------------------~l~-~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 262 TDE--------------------SLF-QVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp CHH--------------------HHH-HHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred cCc--------------------chh-hhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 321 000 24455555555666666666555 44443 3555556666666665555443
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.96 E-value=6.1e-29 Score=234.03 Aligned_cols=236 Identities=19% Similarity=0.238 Sum_probs=185.6
Q ss_pred CCCCCCEEeCCCCcCCCCCchhhcCCCccCeEEccCCCCCCCCChhhhcCCCCceeeccCCcccccCCccccCCcCccEe
Q 040495 96 NLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSVDTNYLVGEIPSAIGSLFKLERL 175 (443)
Q Consensus 96 ~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L 175 (443)
..+++++|++++|.++ .+|..++++++|++|++++|.++ .+|..+..+++|++|++++|.++ .+|..++.+++|++|
T Consensus 79 ~~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L 155 (328)
T 4fcg_A 79 TQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLREL 155 (328)
T ss_dssp TSTTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEE
T ss_pred cccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEE
Confidence 4578999999999998 88888999999999999999999 88999999999999999999998 889999999999999
Q ss_pred eeeccccCccCCccccCCCCCCEEEccCCcCCcccccccCCCCCCEEEcccccCCCCCCccccCCCCCcEEEcccCcCcc
Q 040495 176 FIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLRLLDIAFNHFSGMIPPPIFNISSLEVISLSENRFTG 255 (443)
Q Consensus 176 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~ 255 (443)
++++|.+.+.+|..+... . ....+..+++|++|++++|.++ .+|..+..+++|++|++++|.++
T Consensus 156 ~L~~n~~~~~~p~~~~~~------~--------~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~- 219 (328)
T 4fcg_A 156 SIRACPELTELPEPLAST------D--------ASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS- 219 (328)
T ss_dssp EEEEETTCCCCCSCSEEE------C---------CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-
T ss_pred ECCCCCCccccChhHhhc------c--------chhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-
Confidence 999998888888766531 0 0123455667777777777776 66667777777777777777777
Q ss_pred cCChhhhcCCCCCcEEeCCCCcCCccCCccCcCCCCCCEEecccCcCccccchhhhCCCCCCEEEccCCCCcccCCCchh
Q 040495 256 SLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANELD 335 (443)
Q Consensus 256 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 335 (443)
.+|..+. .+++|++|++++|++.+.+|..+..+++|++|++++|.+.+.+|..+..+++|+.|++++|.+.+..|
T Consensus 220 ~l~~~l~-~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP---- 294 (328)
T 4fcg_A 220 ALGPAIH-HLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLP---- 294 (328)
T ss_dssp CCCGGGG-GCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCC----
T ss_pred cCchhhc-cCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhcc----
Confidence 4555544 67777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred hHhhhcCCCCCCEEEccCCcCc
Q 040495 336 FINLLANCSKLERLYFNRNRFQ 357 (443)
Q Consensus 336 ~~~~~~~~~~L~~L~l~~n~l~ 357 (443)
..+..+++|+.+++..+.+.
T Consensus 295 --~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 295 --SLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp --GGGGGSCTTCEEECCGGGSC
T ss_pred --HHHhhccCceEEeCCHHHHH
Confidence 56777777777777766554
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=3e-28 Score=225.03 Aligned_cols=255 Identities=20% Similarity=0.222 Sum_probs=147.4
Q ss_pred CEEeCCCCcCCCCCchhhcCCCccCeEEccCCCCCCCCChhhhcCCCCceeeccCCcccccCCccccCCcCccEeeeecc
Q 040495 101 RYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSVDTNYLVGEIPSAIGSLFKLERLFIFHN 180 (443)
Q Consensus 101 ~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n 180 (443)
++++.+++.++ .+|..+ .++|++|++++|.+++..+..+..+++|++|++++|.+++..|..+..+++|++|++++|
T Consensus 14 ~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 55666666665 445432 346667777776666555555666666666666666666555556666666666666666
Q ss_pred c-cCccCCccccCCCCCCEEEccCCcCCcccccccCCCCCCEEEcccccCCCCCCccccCCCCCcEEEcccCcCcccCCh
Q 040495 181 H-ITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLRLLDIAFNHFSGMIPPPIFNISSLEVISLSENRFTGSLPV 259 (443)
Q Consensus 181 ~-l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~ 259 (443)
. ++...|..+.. +++|++|++++|.+.+..+..+..+++|++|++++|.++ .++.
T Consensus 91 ~~l~~~~~~~~~~-----------------------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~ 146 (285)
T 1ozn_A 91 AQLRSVDPATFHG-----------------------LGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ-ALPD 146 (285)
T ss_dssp TTCCCCCTTTTTT-----------------------CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCT
T ss_pred CCccccCHHHhcC-----------------------CcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCccc-ccCH
Confidence 4 44333444444 445555555555555444555555666666666666655 3333
Q ss_pred hhhcCCCCCcEEeCCCCcCCccCCccCcCCCCCCEEecccCcCccccchhhhCCCCCCEEEccCCCCcccCCCchhhHhh
Q 040495 260 DAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANELDFINL 339 (443)
Q Consensus 260 ~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~ 339 (443)
..+..+++|++|++++|++++..+..+..+++|++|++++|++++..|..+..+++|+.|++++|.+++..+ ..
T Consensus 147 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~------~~ 220 (285)
T 1ozn_A 147 DTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPT------EA 220 (285)
T ss_dssp TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCH------HH
T ss_pred hHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCH------HH
Confidence 333356666666666666664444456666666666666666666666666666666666666666665544 44
Q ss_pred hcCCCCCCEEEccCCcCcccCChhHhhhccCCCEEeccCCcCeecCchhhh
Q 040495 340 LANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNRISGTIPPGIR 390 (443)
Q Consensus 340 ~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~ 390 (443)
+..+++|++|++++|++....+... +...++.+..+.+.+....|..+.
T Consensus 221 ~~~l~~L~~L~l~~N~~~c~~~~~~--~~~~l~~~~~~~~~~~c~~p~~l~ 269 (285)
T 1ozn_A 221 LAPLRALQYLRLNDNPWVCDCRARP--LWAWLQKFRGSSSEVPCSLPQRLA 269 (285)
T ss_dssp HTTCTTCCEEECCSSCEECSGGGHH--HHHHHHHCCSEECCCBEEESGGGT
T ss_pred cccCcccCEEeccCCCccCCCCcHH--HHHHHHhcccccCccccCCchHhC
Confidence 6666677777777776653322211 112244444555666655665543
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.3e-27 Score=241.92 Aligned_cols=297 Identities=22% Similarity=0.265 Sum_probs=233.6
Q ss_pred CCCCCCCCCCCCCccceeeCCCCCcEEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCCCCCchhhcCCCccCeEEcc
Q 040495 51 VTSSWNNSMSLCQWTGVTCGRRHQRVTRLDLRNQSIGGPLSPYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLS 130 (443)
Q Consensus 51 ~~~~w~~~~~~c~w~gv~c~~~~~~v~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~ 130 (443)
++..|....++|.|.|..+... ....+....+++|++++|.++ .+|..+. ++|++|+++
T Consensus 11 ~w~~W~~~~~~~~~~~r~~~~~------------------~~~~c~~~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~ 69 (622)
T 3g06_A 11 VWSAWRRAAPAEESRGRAAVVQ------------------KMRACLNNGNAVLNVGESGLT-TLPDCLP--AHITTLVIP 69 (622)
T ss_dssp HHHHHHHTCCGGGHHHHHHHHH------------------HHHHHHHHCCCEEECCSSCCS-CCCSCCC--TTCSEEEEC
T ss_pred HHHHHHhcCCcchhccccccCc------------------ccccccCCCCcEEEecCCCcC-ccChhhC--CCCcEEEec
Confidence 4456777777888876433110 001122246899999999998 7787665 799999999
Q ss_pred CCCCCCCCChhhhcCCCCceeeccCCcccccCCccccCCcCccEeeeeccccCccCCccccCCCCCCEEEccCCcCCccc
Q 040495 131 NNSFSGTIPTNLSRRSNLIELSVDTNYLVGEIPSAIGSLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRI 210 (443)
Q Consensus 131 ~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 210 (443)
+|.++ .+|. .+++|++|++++|+++ .+|. .+++|++|++++|.+++ +|. .+++|+.|++++|.++..+
T Consensus 70 ~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~l~~-l~~---~l~~L~~L~L~~N~l~~lp 137 (622)
T 3g06_A 70 DNNLT-SLPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSIFSNPLTH-LPA---LPSGLCKLWIFGNQLTSLP 137 (622)
T ss_dssp SCCCS-CCCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEECSCCCCC-CCC---CCTTCCEEECCSSCCSCCC
T ss_pred CCCCC-CCCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEECcCCcCCC-CCC---CCCCcCEEECCCCCCCcCC
Confidence 99998 5666 5789999999999998 5666 67899999999999984 454 6788999999999888755
Q ss_pred ccccCCCCCCEEEcccccCCCCCCccccCCCCCcEEEcccCcCcccCChhhhcCCCCCcEEeCCCCcCCccCCccCcCCC
Q 040495 211 DSLVQLRNLRLLDIAFNHFSGMIPPPIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNAS 290 (443)
Q Consensus 211 ~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~ 290 (443)
.. +++|++|++++|.+++ +|. ..++|+.|++++|.++ .+| ..+++|+.|++++|++++ +|.. .+
T Consensus 138 ~~---l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~-~l~----~~~~~L~~L~Ls~N~l~~-l~~~---~~ 201 (622)
T 3g06_A 138 VL---PPGLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQLT-SLP----MLPSGLQELSVSDNQLAS-LPTL---PS 201 (622)
T ss_dssp CC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS-CCC----CCCTTCCEEECCSSCCSC-CCCC---CT
T ss_pred CC---CCCCCEEECcCCcCCC-cCC---ccCCCCEEECCCCCCC-CCc----ccCCCCcEEECCCCCCCC-CCCc---cc
Confidence 43 4889999999999875 443 3468899999999998 577 257899999999999984 5543 47
Q ss_pred CCCEEecccCcCccccchhhhCCCCCCEEEccCCCCcccCCCchhhHhhhcCCCCCCEEEccCCcCcccCChhHhhhccC
Q 040495 291 RLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFSST 370 (443)
Q Consensus 291 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~ 370 (443)
+|+.|++++|.++. +|. .+++|+.|++++|.+++.. ..+++|++|++++|+++ .+|. .+++
T Consensus 202 ~L~~L~L~~N~l~~-l~~---~~~~L~~L~Ls~N~L~~lp----------~~l~~L~~L~Ls~N~L~-~lp~----~~~~ 262 (622)
T 3g06_A 202 ELYKLWAYNNRLTS-LPA---LPSGLKELIVSGNRLTSLP----------VLPSELKELMVSGNRLT-SLPM----LPSG 262 (622)
T ss_dssp TCCEEECCSSCCSS-CCC---CCTTCCEEECCSSCCSCCC----------CCCTTCCEEECCSSCCS-CCCC----CCTT
T ss_pred hhhEEECcCCcccc-cCC---CCCCCCEEEccCCccCcCC----------CCCCcCcEEECCCCCCC-cCCc----cccc
Confidence 89999999999884 343 3478999999999888743 24578999999999998 6776 2478
Q ss_pred CCEEeccCCcCeecCchhhhcCCCCCeEeCcCCcCcccCchhhcCC
Q 040495 371 IKQIAMGRNRISGTIPPGIRSHANLNWLTMDSNLFTGTIPPVIGEL 416 (443)
Q Consensus 371 L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~n~~~~~~p~~~~~l 416 (443)
|+.|++++|+++ .+|..+..+++|+.|+|++|.+++..|..+..+
T Consensus 263 L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L 307 (622)
T 3g06_A 263 LLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREI 307 (622)
T ss_dssp CCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHH
T ss_pred CcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhc
Confidence 999999999998 788889999999999999999998888766543
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.7e-28 Score=248.35 Aligned_cols=269 Identities=25% Similarity=0.311 Sum_probs=225.5
Q ss_pred CcEEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCCCCCchhhcCCCccCeEEccCCCCCCCCChhhhcCCCCceeec
Q 040495 74 QRVTRLDLRNQSIGGPLSPYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSV 153 (443)
Q Consensus 74 ~~v~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l 153 (443)
..++.|+++++.++ .+|..+. ++|++|++++|.++ .+|. .+++|++|++++|.++ .+|. .+++|++|++
T Consensus 40 ~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~L 108 (622)
T 3g06_A 40 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSI 108 (622)
T ss_dssp HCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEE
T ss_pred CCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEEC
Confidence 35789999999997 5666554 89999999999998 5665 6789999999999998 5666 6799999999
Q ss_pred cCCcccccCCccccCCcCccEeeeeccccCccCCccccCCCCCCEEEccCCcCCcccccccCCCCCCEEEcccccCCCCC
Q 040495 154 DTNYLVGEIPSAIGSLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLRLLDIAFNHFSGMI 233 (443)
Q Consensus 154 ~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~~~~~~ 233 (443)
++|.++ .+|. .+++|+.|++++|.+++ +|.. +++|++|++++|.+.+... .+++|+.|++++|.+++ +
T Consensus 109 s~N~l~-~l~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~l~~---~~~~L~~L~L~~N~l~~-l 176 (622)
T 3g06_A 109 FSNPLT-HLPA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLASLPA---LPSELCKLWAYNNQLTS-L 176 (622)
T ss_dssp CSCCCC-CCCC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSC-C
T ss_pred cCCcCC-CCCC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCCcCC---ccCCCCEEECCCCCCCC-C
Confidence 999998 4555 56899999999999984 5653 4899999999998887543 35789999999999985 5
Q ss_pred CccccCCCCCcEEEcccCcCcccCChhhhcCCCCCcEEeCCCCcCCccCCccCcCCCCCCEEecccCcCccccchhhhCC
Q 040495 234 PPPIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRL 313 (443)
Q Consensus 234 ~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l 313 (443)
| ..+++|+.|++++|.++ .+|. .+++|+.|++++|.++ .+|.. +++|+.|++++|++++ +| ..+
T Consensus 177 ~---~~~~~L~~L~Ls~N~l~-~l~~----~~~~L~~L~L~~N~l~-~l~~~---~~~L~~L~Ls~N~L~~-lp---~~l 240 (622)
T 3g06_A 177 P---MLPSGLQELSVSDNQLA-SLPT----LPSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLTS-LP---VLP 240 (622)
T ss_dssp C---CCCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCS-SCCCC---CTTCCEEECCSSCCSC-CC---CCC
T ss_pred c---ccCCCCcEEECCCCCCC-CCCC----ccchhhEEECcCCccc-ccCCC---CCCCCEEEccCCccCc-CC---CCC
Confidence 5 45789999999999998 5664 3589999999999998 55543 4789999999999996 44 467
Q ss_pred CCCCEEEccCCCCcccCCCchhhHhhhcCCCCCCEEEccCCcCcccCChhHhhhccCCCEEeccCCcCeecCchhhhcCC
Q 040495 314 KNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNRISGTIPPGIRSHA 393 (443)
Q Consensus 314 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~ 393 (443)
++|+.|++++|.++.... .+++|+.|++++|+++ .+|..+..+ ++|+.|++++|++++..|..+..++
T Consensus 241 ~~L~~L~Ls~N~L~~lp~----------~~~~L~~L~Ls~N~L~-~lp~~l~~l-~~L~~L~L~~N~l~~~~~~~l~~L~ 308 (622)
T 3g06_A 241 SELKELMVSGNRLTSLPM----------LPSGLLSLSVYRNQLT-RLPESLIHL-SSETTVNLEGNPLSERTLQALREIT 308 (622)
T ss_dssp TTCCEEECCSSCCSCCCC----------CCTTCCEEECCSSCCC-SCCGGGGGS-CTTCEEECCSCCCCHHHHHHHHHHH
T ss_pred CcCcEEECCCCCCCcCCc----------ccccCcEEeCCCCCCC-cCCHHHhhc-cccCEEEecCCCCCCcCHHHHHhcc
Confidence 899999999999986433 5689999999999999 889888875 8999999999999998888776443
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.96 E-value=6.2e-30 Score=239.40 Aligned_cols=255 Identities=18% Similarity=0.205 Sum_probs=142.0
Q ss_pred ccCCCCCCEEeCCCCcCCCCCchhhcCCCccCeEEccCCCC-CCCCChhhh-------cCCCCceeeccCCcccccCCcc
Q 040495 94 VGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSF-SGTIPTNLS-------RRSNLIELSVDTNYLVGEIPSA 165 (443)
Q Consensus 94 ~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~-~~~~p~~l~-------~l~~L~~L~l~~n~l~~~~p~~ 165 (443)
++..++|++|++++|.+ .+|..+... |++|++++|.+ ...+|..+. ++++|++|++++|.+++.+|..
T Consensus 39 ~~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 114 (312)
T 1wwl_A 39 YGGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPP 114 (312)
T ss_dssp EEEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCC
T ss_pred EccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHH
Confidence 34455666677777666 556555443 66666666666 334555444 5666666666666666666655
Q ss_pred c--cCCcCccEeeeeccccCccCCccccCCCCCCEEEccCCcCCcccccccCCCCCCEEEcccccCCCCCCccccCCCCC
Q 040495 166 I--GSLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLRLLDIAFNHFSGMIPPPIFNISSL 243 (443)
Q Consensus 166 l--~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L 243 (443)
+ +.+++|++|++++|.+++. |..+..+.. ...++|++|++++|.+.+..+..+..+++|
T Consensus 115 ~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~------------------~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L 175 (312)
T 1wwl_A 115 LLEATGPDLNILNLRNVSWATR-DAWLAELQQ------------------WLKPGLKVLSIAQAHSLNFSCEQVRVFPAL 175 (312)
T ss_dssp SSSCCSCCCSEEEEESCBCSSS-SSHHHHHHT------------------TCCTTCCEEEEESCSCCCCCTTTCCCCSSC
T ss_pred HHHhcCCCccEEEccCCCCcch-hHHHHHHHH------------------hhcCCCcEEEeeCCCCccchHHHhccCCCC
Confidence 4 5666666666666666644 544443300 001455555555555555444555555566
Q ss_pred cEEEcccCcCcccC--Chhh-hcCCCCCcEEeCCCCcCCc--cCC-ccCcCCCCCCEEecccCcCccccc-hhhhCCCCC
Q 040495 244 EVISLSENRFTGSL--PVDA-GVNLPNLRQLSPNGNNFTG--SIP-VSLSNASRLEMIEFSRNQFSGRVS-VDFSRLKNL 316 (443)
Q Consensus 244 ~~L~l~~n~l~~~~--~~~~-~~~~~~L~~L~L~~n~l~~--~~~-~~l~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L 316 (443)
++|++++|.+.+.+ +..+ +..+++|++|++++|++++ .++ ..+..+++|++|++++|++++..| ..+..+++|
T Consensus 176 ~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L 255 (312)
T 1wwl_A 176 STLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQL 255 (312)
T ss_dssp CEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTC
T ss_pred CEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCC
Confidence 66666665554331 2122 1245666666666666552 111 223455666666666666665543 334455666
Q ss_pred CEEEccCCCCcccCCCchhhHhhhcCCCCCCEEEccCCcCcccCChhHhhhccCCCEEeccCCcCee
Q 040495 317 SFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNRISG 383 (443)
Q Consensus 317 ~~L~l~~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~ 383 (443)
++|++++|.++.. | ..+. ++|++|++++|++++. |. +.. .++|+.|++++|++++
T Consensus 256 ~~L~Ls~N~l~~i-p------~~~~--~~L~~L~Ls~N~l~~~-p~-~~~-l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 256 NSLNLSFTGLKQV-P------KGLP--AKLSVLDLSYNRLDRN-PS-PDE-LPQVGNLSLKGNPFLD 310 (312)
T ss_dssp CEEECTTSCCSSC-C------SSCC--SEEEEEECCSSCCCSC-CC-TTT-SCEEEEEECTTCTTTC
T ss_pred CEEECCCCccChh-h------hhcc--CCceEEECCCCCCCCC-hh-Hhh-CCCCCEEeccCCCCCC
Confidence 6666666666632 2 1122 5677777777777643 54 444 3667777777777664
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=99.96 E-value=2.7e-27 Score=233.06 Aligned_cols=248 Identities=21% Similarity=0.217 Sum_probs=197.1
Q ss_pred EEEcCCCCCcccccccccCCCCCCEEeCCCCcCCCCCchhhcCCCccCeEEccCCCCCCCCChhhhcCCCCceeeccCCc
Q 040495 78 RLDLRNQSIGGPLSPYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSVDTNY 157 (443)
Q Consensus 78 ~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~ 157 (443)
.++.++.+++. +|..+. +++++|++++|.+++..+..|.++++|++|++++|.+++..|..|.++++|++|++++|.
T Consensus 58 ~v~c~~~~l~~-iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~ 134 (452)
T 3zyi_A 58 KVVCTRRGLSE-VPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW 134 (452)
T ss_dssp EEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EEEECCCCcCc-cCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCc
Confidence 34445555543 444332 689999999999998888999999999999999999998888899999999999999999
Q ss_pred ccccCCccccCCcCccEeeeeccccCccCCccccCCCCCCEEEccCC-cCCccc-ccccCCCCCCEEEcccccCCCCCCc
Q 040495 158 LVGEIPSAIGSLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVREN-ILWGRI-DSLVQLRNLRLLDIAFNHFSGMIPP 235 (443)
Q Consensus 158 l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n-~l~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~ 235 (443)
+++..+..+..+++|++|++++|.++...+..+.++++|++|++++| .+.... ..+..+++|++|++++|.+.+. |
T Consensus 135 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~- 212 (452)
T 3zyi_A 135 LTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-P- 212 (452)
T ss_dssp CSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-C-
T ss_pred CCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-c-
Confidence 99666667889999999999999998766677889999999999885 444333 4677888888888888888743 3
Q ss_pred cccCCCCCcEEEcccCcCcccCChhhhcCCCCCcEEeCCCCcCCccCCccCcCCCCCCEEecccCcCccccchhhhCCCC
Q 040495 236 PIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKN 315 (443)
Q Consensus 236 ~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~ 315 (443)
.+..+++|++|++++|.+++..|..+. .+++|++|++++|++++..+..+..+++|+.|++++|++++..+..+..+++
T Consensus 213 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 291 (452)
T 3zyi_A 213 NLTPLVGLEELEMSGNHFPEIRPGSFH-GLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRY 291 (452)
T ss_dssp CCTTCTTCCEEECTTSCCSEECGGGGT-TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTT
T ss_pred cccccccccEEECcCCcCcccCccccc-CccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccC
Confidence 477778888888888888754454444 7788888888888888777777888888888888888888766667777888
Q ss_pred CCEEEccCCCCcccCC
Q 040495 316 LSFLNMGINNLGTRTA 331 (443)
Q Consensus 316 L~~L~l~~n~l~~~~~ 331 (443)
|+.|++++|.+.....
T Consensus 292 L~~L~L~~Np~~CdC~ 307 (452)
T 3zyi_A 292 LVELHLHHNPWNCDCD 307 (452)
T ss_dssp CCEEECCSSCEECSTT
T ss_pred CCEEEccCCCcCCCCC
Confidence 8888888887766543
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=99.96 E-value=3.3e-27 Score=232.46 Aligned_cols=245 Identities=16% Similarity=0.168 Sum_probs=140.8
Q ss_pred CceeeccCCcccccCCccccCCcCccEeeeeccccCccCCccccCCCCCCEEEccCCcCCccc-ccccCCCCCCEEEccc
Q 040495 148 LIELSVDTNYLVGEIPSAIGSLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRI-DSLVQLRNLRLLDIAF 226 (443)
Q Consensus 148 L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~-~~l~~l~~L~~L~l~~ 226 (443)
...++.++..++ .+|..+. +++++|++++|.+++..+..+.++++|++|++++|.+.+.. ..+..+++|++|++++
T Consensus 56 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~ 132 (452)
T 3zyi_A 56 FSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD 132 (452)
T ss_dssp SCEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CcEEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence 456777777776 5666543 57888888888888777777777777777777777776655 5566666777777777
Q ss_pred ccCCCCCCccccCCCCCcEEEcccCcCcccCChhhhcCCCCCcEEeCCCC-cCCccCCccCcCCCCCCEEecccCcCccc
Q 040495 227 NHFSGMIPPPIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGN-NFTGSIPVSLSNASRLEMIEFSRNQFSGR 305 (443)
Q Consensus 227 n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~~~L~~L~l~~n~l~~~ 305 (443)
|.+++..+..+..+++|++|++++|.++ .+|...+..+++|++|++++| .+....+..+..+++|++|++++|++++.
T Consensus 133 n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~ 211 (452)
T 3zyi_A 133 NWLTVIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM 211 (452)
T ss_dssp SCCSBCCTTTSSSCTTCCEEECCSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC
T ss_pred CcCCccChhhhcccCCCCEEECCCCCcc-eeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc
Confidence 7666555555666666666666666665 444444445666666666653 33322223455555555555555555532
Q ss_pred cchhhhCCCCCCEEEccCCCCcccCCCchhhHhhhcCCCCCCEEEccCCcCcccCChhHhhhccCCCEEeccCCcCeecC
Q 040495 306 VSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNRISGTI 385 (443)
Q Consensus 306 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~ 385 (443)
| .+..+++|+.|++++|.+++..+ ..+.++++|++|++++|++++..|..+..+ ++|+.|+|++|++++..
T Consensus 212 -~-~~~~l~~L~~L~Ls~N~l~~~~~------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~ 282 (452)
T 3zyi_A 212 -P-NLTPLVGLEELEMSGNHFPEIRP------GSFHGLSSLKKLWVMNSQVSLIERNAFDGL-ASLVELNLAHNNLSSLP 282 (452)
T ss_dssp -C-CCTTCTTCCEEECTTSCCSEECG------GGGTTCTTCCEEECTTSCCCEECTTTTTTC-TTCCEEECCSSCCSCCC
T ss_pred -c-cccccccccEEECcCCcCcccCc------ccccCccCCCEEEeCCCcCceECHHHhcCC-CCCCEEECCCCcCCccC
Confidence 2 24445555555555555554444 344455555555555555554434433332 44555555555555333
Q ss_pred chhhhcCCCCCeEeCcCCcC
Q 040495 386 PPGIRSHANLNWLTMDSNLF 405 (443)
Q Consensus 386 p~~l~~~~~L~~L~L~~n~~ 405 (443)
+..+..+++|+.|+|++|++
T Consensus 283 ~~~~~~l~~L~~L~L~~Np~ 302 (452)
T 3zyi_A 283 HDLFTPLRYLVELHLHHNPW 302 (452)
T ss_dssp TTSSTTCTTCCEEECCSSCE
T ss_pred hHHhccccCCCEEEccCCCc
Confidence 33344445555555555544
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.3e-30 Score=242.31 Aligned_cols=268 Identities=17% Similarity=0.198 Sum_probs=174.1
Q ss_pred CCCCCCCCCCCCccceeeCCCCCcEEEEEcCCCCCcccccccccCCCCCCEEeCCCCcC-CCCCchhhc-------CCCc
Q 040495 52 TSSWNNSMSLCQWTGVTCGRRHQRVTRLDLRNQSIGGPLSPYVGNLSFLRYINLANNGF-LGEIPPQIG-------RLNM 123 (443)
Q Consensus 52 ~~~w~~~~~~c~w~gv~c~~~~~~v~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~-~~~~~~~l~-------~l~~ 123 (443)
..+|.....|+.+..+.......+++.++++++.+ .+|..+... |++|++++|.+ ...+|..+. ++++
T Consensus 21 ~~~~~~~~~c~~~~~~~~~~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~ 96 (312)
T 1wwl_A 21 KPDWSSAFNCLGAADVELYGGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISG 96 (312)
T ss_dssp SCCGGGGGGSSSCSEEEEEEEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSC
T ss_pred ccchHHHhhhhccccEEEEccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCC
Confidence 34676555555565543322225678888899988 567655544 99999999998 446777766 8999
Q ss_pred cCeEEccCCCCCCCCChhh--hcCCCCceeeccCCcccccCCccccCC-----cCccEeeeeccccCccCCccccCCCCC
Q 040495 124 LEGLVLSNNSFSGTIPTNL--SRRSNLIELSVDTNYLVGEIPSAIGSL-----FKLERLFIFHNHITGQLPASIGNLSSL 196 (443)
Q Consensus 124 L~~L~l~~n~~~~~~p~~l--~~l~~L~~L~l~~n~l~~~~p~~l~~l-----~~L~~L~l~~n~l~~~~~~~l~~l~~L 196 (443)
|++|++++|.+++.+|..+ ..+++|++|++++|.+++. |..++.+ ++|++|++++|.+++..|..+..+++|
T Consensus 97 L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L 175 (312)
T 1wwl_A 97 LQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPAL 175 (312)
T ss_dssp CCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSC
T ss_pred ccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCC
Confidence 9999999999999999876 8999999999999999966 8777776 899999999999997777888888888
Q ss_pred CEEEccCCcCCccc---ccc--cCCCCCCEEEcccccCCCCCCccccCCCCCcEEEcccCcCcccCChhhhcCCCCCcEE
Q 040495 197 LAFDVRENILWGRI---DSL--VQLRNLRLLDIAFNHFSGMIPPPIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQL 271 (443)
Q Consensus 197 ~~L~l~~n~l~~~~---~~l--~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L 271 (443)
++|++++|.+.+.. ..+ ..+++|++|++++|.+++. +.++..++..+++|++|
T Consensus 176 ~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~----------------------~~~~~~~~~~l~~L~~L 233 (312)
T 1wwl_A 176 STLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETP----------------------SGVCSALAAARVQLQGL 233 (312)
T ss_dssp CEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCH----------------------HHHHHHHHHTTCCCSEE
T ss_pred CEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcch----------------------HHHHHHHHhcCCCCCEE
Confidence 88888888765532 222 5556666666666655421 01222222234444444
Q ss_pred eCCCCcCCccCC-ccCcCCCCCCEEecccCcCccccchhhhCCCCCCEEEccCCCCcccCCCchhhHhhhcCCCCCCEEE
Q 040495 272 SPNGNNFTGSIP-VSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLY 350 (443)
Q Consensus 272 ~L~~n~l~~~~~-~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~L~~L~ 350 (443)
++++|++++..| ..+..+++|++|++++|+++ .+|..+. ++|++|++++|++++. | . +..+++|++|+
T Consensus 234 ~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p------~-~~~l~~L~~L~ 302 (312)
T 1wwl_A 234 DLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-P------S-PDELPQVGNLS 302 (312)
T ss_dssp ECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-C------C-TTTSCEEEEEE
T ss_pred ECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-h------h-HhhCCCCCEEe
Confidence 444444443332 22333445555555555554 3333332 4555555555555544 2 1 44455555555
Q ss_pred ccCCcCc
Q 040495 351 FNRNRFQ 357 (443)
Q Consensus 351 l~~n~l~ 357 (443)
+++|+++
T Consensus 303 L~~N~l~ 309 (312)
T 1wwl_A 303 LKGNPFL 309 (312)
T ss_dssp CTTCTTT
T ss_pred ccCCCCC
Confidence 5555554
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=3e-27 Score=231.96 Aligned_cols=247 Identities=21% Similarity=0.181 Sum_probs=197.7
Q ss_pred EEEcCCCCCcccccccccCCCCCCEEeCCCCcCCCCCchhhcCCCccCeEEccCCCCCCCCChhhhcCCCCceeeccCCc
Q 040495 78 RLDLRNQSIGGPLSPYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSVDTNY 157 (443)
Q Consensus 78 ~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~ 157 (443)
.++.++..++. +|..+. +++++|+|++|.+++..+..|.++++|++|++++|.+++..+..|.++++|++|++++|+
T Consensus 47 ~v~c~~~~l~~-iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~ 123 (440)
T 3zyj_A 47 KVICVRKNLRE-VPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR 123 (440)
T ss_dssp EEECCSCCCSS-CCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSC
T ss_pred EEEeCCCCcCc-CCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCc
Confidence 45555555543 454433 689999999999998888899999999999999999997778889999999999999999
Q ss_pred ccccCCccccCCcCccEeeeeccccCccCCccccCCCCCCEEEccCCc-CCccc-ccccCCCCCCEEEcccccCCCCCCc
Q 040495 158 LVGEIPSAIGSLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENI-LWGRI-DSLVQLRNLRLLDIAFNHFSGMIPP 235 (443)
Q Consensus 158 l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~-l~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~ 235 (443)
++...+..+..+++|++|++++|.++...+..+.++++|++|++++|. +.... ..+..+++|++|++++|.++. +|
T Consensus 124 l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~- 201 (440)
T 3zyj_A 124 LTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE-IP- 201 (440)
T ss_dssp CSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS-CC-
T ss_pred CCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc-cc-
Confidence 996666678999999999999999997777788899999999998854 44333 467788888888888888873 34
Q ss_pred cccCCCCCcEEEcccCcCcccCChhhhcCCCCCcEEeCCCCcCCccCCccCcCCCCCCEEecccCcCccccchhhhCCCC
Q 040495 236 PIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKN 315 (443)
Q Consensus 236 ~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~ 315 (443)
.+..+++|++|++++|.+++..|..+. .+++|++|++++|++++..+..+..+++|+.|++++|++++..+..+..+++
T Consensus 202 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 280 (440)
T 3zyj_A 202 NLTPLIKLDELDLSGNHLSAIRPGSFQ-GLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHH 280 (440)
T ss_dssp CCTTCSSCCEEECTTSCCCEECTTTTT-TCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTT
T ss_pred ccCCCcccCEEECCCCccCccChhhhc-cCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccC
Confidence 477788888888888888754444443 7788888888888888777777888888888888888888777777778888
Q ss_pred CCEEEccCCCCcccC
Q 040495 316 LSFLNMGINNLGTRT 330 (443)
Q Consensus 316 L~~L~l~~n~l~~~~ 330 (443)
|+.|++++|.+...-
T Consensus 281 L~~L~L~~Np~~CdC 295 (440)
T 3zyj_A 281 LERIHLHHNPWNCNC 295 (440)
T ss_dssp CCEEECCSSCEECSS
T ss_pred CCEEEcCCCCccCCC
Confidence 888888888776554
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.6e-29 Score=237.08 Aligned_cols=246 Identities=17% Similarity=0.253 Sum_probs=159.5
Q ss_pred CcCccEeeeeccccCccCCccccCCCCCCEEEccCCcCCcccccccCCCCCCEEEcccccCCCCCCccccCCCCCcEEEc
Q 040495 169 LFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLRLLDIAFNHFSGMIPPPIFNISSLEVISL 248 (443)
Q Consensus 169 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l 248 (443)
+++|++|++++|.+++..|..+..+++|++|++++|.+.+..+ +..+++|++|++++|.+++. ...++|++|++
T Consensus 33 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~l-----~~~~~L~~L~l 106 (317)
T 3o53_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQEL-----LVGPSIETLHA 106 (317)
T ss_dssp GGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEEEE-----EECTTCCEEEC
T ss_pred CCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCccccc-----cCCCCcCEEEC
Confidence 3344444444444443333344444444444444444433222 44455555555555555421 12256777777
Q ss_pred ccCcCcccCChhhhcCCCCCcEEeCCCCcCCccCCccCcCCCCCCEEecccCcCccccchhh-hCCCCCCEEEccCCCCc
Q 040495 249 SENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDF-SRLKNLSFLNMGINNLG 327 (443)
Q Consensus 249 ~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~ 327 (443)
++|.+++ ++.. .+++|++|++++|++++..+..+..+++|++|++++|++++..+..+ ..+++|++|++++|.++
T Consensus 107 ~~n~l~~-~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~ 182 (317)
T 3o53_A 107 ANNNISR-VSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182 (317)
T ss_dssp CSSCCSE-EEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred CCCccCC-cCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCc
Confidence 7776663 3322 35677788888887776666677777888888888888877666655 36788888888888877
Q ss_pred ccCCCchhhHhhhcCCCCCCEEEccCCcCcccCChhHhhhccCCCEEeccCCcCeecCchhhhcCCCCCeEeCcCCcCc-
Q 040495 328 TRTANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNRISGTIPPGIRSHANLNWLTMDSNLFT- 406 (443)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~n~~~- 406 (443)
+... ...+++|++|++++|+++ .+|..+..+ ++|+.|++++|+++ .+|..+..+++|+.|++++|++.
T Consensus 183 ~~~~--------~~~l~~L~~L~Ls~N~l~-~l~~~~~~l-~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~ 251 (317)
T 3o53_A 183 DVKG--------QVVFAKLKTLDLSSNKLA-FMGPEFQSA-AGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHC 251 (317)
T ss_dssp EEEC--------CCCCTTCCEEECCSSCCC-EECGGGGGG-TTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBH
T ss_pred cccc--------ccccccCCEEECCCCcCC-cchhhhccc-CcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccC
Confidence 6643 334778888888888888 455556553 78888888888888 46777788888888888888887
Q ss_pred ccCchhhcCCCCCCEEEccC-CcCcccCCc
Q 040495 407 GTIPPVIGELKNLQLLDLGG-NFLQGSIPS 435 (443)
Q Consensus 407 ~~~p~~~~~l~~L~~L~l~~-n~l~~~~p~ 435 (443)
+.+|..+..+++|+.+++++ +.+.|..|.
T Consensus 252 ~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~ 281 (317)
T 3o53_A 252 GTLRDFFSKNQRVQTVAKQTVKKLTGQNEE 281 (317)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHSSSSC
T ss_pred cCHHHHHhccccceEEECCCchhccCCchh
Confidence 77777888888888888874 345555443
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=8.1e-28 Score=222.12 Aligned_cols=255 Identities=18% Similarity=0.165 Sum_probs=188.0
Q ss_pred EEEEcCCCCCcccccccccCCCCCCEEeCCCCcCCCCCchhhcCCCccCeEEccCCCCCCCCChhhhcCCCCceeeccCC
Q 040495 77 TRLDLRNQSIGGPLSPYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSVDTN 156 (443)
Q Consensus 77 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n 156 (443)
+.++.++++++. +|.. -.++|++|++++|.+++..+..+.++++|++|++++|.+++..|..+.++++|++|++++|
T Consensus 14 ~~~~c~~~~l~~-ip~~--~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQA-VPVG--IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCSS-CCTT--CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCccc-CCcC--CCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 577888887765 3432 3579999999999999877788999999999999999999888999999999999999999
Q ss_pred c-ccccCCccccCCcCccEeeeeccccCccCCccccCCCCCCEEEccCCcCCcccccccCCCCCCEEEcccccCCCCCCc
Q 040495 157 Y-LVGEIPSAIGSLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLRLLDIAFNHFSGMIPP 235 (443)
Q Consensus 157 ~-l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~~~~~~~~ 235 (443)
. +....|..+..+++|++|++++|.+++..|..+.++++|++|++++|.+.. ..+.
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-----------------------~~~~ 147 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQA-----------------------LPDD 147 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCC-----------------------CCTT
T ss_pred CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccc-----------------------cCHh
Confidence 7 776668889999999999999999987666666666666666555554443 3334
Q ss_pred cccCCCCCcEEEcccCcCcccCChhhhcCCCCCcEEeCCCCcCCccCCccCcCCCCCCEEecccCcCccccchhhhCCCC
Q 040495 236 PIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKN 315 (443)
Q Consensus 236 ~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~ 315 (443)
.+..+++|++|++++|.++ .++...+..+++|++|++++|.+++..|..+..+++|+.|++++|++++..+..+..+++
T Consensus 148 ~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 226 (285)
T 1ozn_A 148 TFRDLGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRA 226 (285)
T ss_dssp TTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTT
T ss_pred HhccCCCccEEECCCCccc-ccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcc
Confidence 4555666666666666665 344433336777777777777777667777788888888888888888766667888888
Q ss_pred CCEEEccCCCCcccCCCchhhHhhhcCCCCCCEEEccCCcCcccCChhHh
Q 040495 316 LSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQSMA 365 (443)
Q Consensus 316 L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~ 365 (443)
|+.|++++|.+....+.. .+... ++.+..+.+.+....|..+.
T Consensus 227 L~~L~l~~N~~~c~~~~~-~~~~~------l~~~~~~~~~~~c~~p~~l~ 269 (285)
T 1ozn_A 227 LQYLRLNDNPWVCDCRAR-PLWAW------LQKFRGSSSEVPCSLPQRLA 269 (285)
T ss_dssp CCEEECCSSCEECSGGGH-HHHHH------HHHCCSEECCCBEEESGGGT
T ss_pred cCEEeccCCCccCCCCcH-HHHHH------HHhcccccCccccCCchHhC
Confidence 888888888877654421 11111 23333556677767776554
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.4e-29 Score=258.24 Aligned_cols=356 Identities=15% Similarity=0.117 Sum_probs=228.0
Q ss_pred CcEEEEEcCCCCCcccccccccC-CCC-CCEEeCCCCc-CCC-CCchhhcCCCccCeEEccCCCCCCC----CChhhhcC
Q 040495 74 QRVTRLDLRNQSIGGPLSPYVGN-LSF-LRYINLANNG-FLG-EIPPQIGRLNMLEGLVLSNNSFSGT----IPTNLSRR 145 (443)
Q Consensus 74 ~~v~~L~l~~~~~~~~~~~~~~~-l~~-L~~L~L~~n~-~~~-~~~~~l~~l~~L~~L~l~~n~~~~~----~p~~l~~l 145 (443)
..+++|+++++.+.+..+..+.. ++. |++|++++|. ++. .++....++++|++|++++|.+++. ++..+..+
T Consensus 112 ~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~ 191 (592)
T 3ogk_B 112 RQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHN 191 (592)
T ss_dssp TTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHC
T ss_pred CCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcC
Confidence 45777777777666554444444 233 6666666654 111 1222233566666666666665544 22233455
Q ss_pred CCCceeeccCCccc----ccCCccccCCcCccEeeeeccccCccCCccccCCCCCCEEEcc-------------------
Q 040495 146 SNLIELSVDTNYLV----GEIPSAIGSLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVR------------------- 202 (443)
Q Consensus 146 ~~L~~L~l~~n~l~----~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~------------------- 202 (443)
++|++|++++|.++ +.++..+.++++|++|++++|.+.+ ++..+..+++|++|+++
T Consensus 192 ~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~ 270 (592)
T 3ogk_B 192 TSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPR 270 (592)
T ss_dssp CCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCT
T ss_pred CCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccc
Confidence 66666666666654 2233334455666666666665553 34444455555555554
Q ss_pred --------CCcCCcccccccCCCCCCEEEcccccCCCCCC-ccccCCCCCcEEEcccCcCcccCChhhhcCCCCCcEEeC
Q 040495 203 --------ENILWGRIDSLVQLRNLRLLDIAFNHFSGMIP-PPIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSP 273 (443)
Q Consensus 203 --------~n~l~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L 273 (443)
++........+..+++|++|++++|.+++... ..+..+++|++|+++ +.+.+.....+...+++|++|++
T Consensus 271 ~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L 349 (592)
T 3ogk_B 271 KLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRI 349 (592)
T ss_dssp TCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEE
T ss_pred cccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEe
Confidence 43222222444556777778887777553322 234667778888777 33332323333346788888888
Q ss_pred CC-----------CcCCcc-CCccCcCCCCCCEEecccCcCccccchhhhC-CCCCCEEEcc----CCCCcccCCCchhh
Q 040495 274 NG-----------NNFTGS-IPVSLSNASRLEMIEFSRNQFSGRVSVDFSR-LKNLSFLNMG----INNLGTRTANELDF 336 (443)
Q Consensus 274 ~~-----------n~l~~~-~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~l~----~n~l~~~~~~~~~~ 336 (443)
++ +.+++. ++.....+++|++|+++.+.+++..+..+.. +++|+.|+++ .|.+++... +-.+
T Consensus 350 ~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~-~~~~ 428 (592)
T 3ogk_B 350 ERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPL-DNGV 428 (592)
T ss_dssp ECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCC-HHHH
T ss_pred ecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchH-HHHH
Confidence 83 455533 2233455888999999888888877777765 8899999996 566665432 1122
Q ss_pred HhhhcCCCCCCEEEccCCc--CcccCChhHhhhccCCCEEeccCCcCeec-CchhhhcCCCCCeEeCcCCcCccc-Cchh
Q 040495 337 INLLANCSKLERLYFNRNR--FQGVLPQSMANFSSTIKQIAMGRNRISGT-IPPGIRSHANLNWLTMDSNLFTGT-IPPV 412 (443)
Q Consensus 337 ~~~~~~~~~L~~L~l~~n~--l~~~~p~~~~~~~~~L~~L~L~~n~l~~~-~p~~l~~~~~L~~L~L~~n~~~~~-~p~~ 412 (443)
...+.++++|++|++++|. +++..+..+...+++|+.|++++|++++. ++..+..+++|++|++++|.+++. ++..
T Consensus 429 ~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 508 (592)
T 3ogk_B 429 RSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAA 508 (592)
T ss_dssp HHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHH
T ss_pred HHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHH
Confidence 3456779999999998544 77666667766568999999999999874 566678899999999999998755 4455
Q ss_pred hcCCCCCCEEEccCCcCccc
Q 040495 413 IGELKNLQLLDLGGNFLQGS 432 (443)
Q Consensus 413 ~~~l~~L~~L~l~~n~l~~~ 432 (443)
...+++|++|++++|++++.
T Consensus 509 ~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 509 VTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp HHHCSSCCEEEEESCBCCTT
T ss_pred HHhcCccCeeECcCCcCCHH
Confidence 56789999999999999865
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=4e-27 Score=231.08 Aligned_cols=247 Identities=17% Similarity=0.221 Sum_probs=165.8
Q ss_pred CCceeeccCCcccccCCccccCCcCccEeeeeccccCccCCccccCCCCCCEEEccCCcCCccc-ccccCCCCCCEEEcc
Q 040495 147 NLIELSVDTNYLVGEIPSAIGSLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRI-DSLVQLRNLRLLDIA 225 (443)
Q Consensus 147 ~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~-~~l~~l~~L~~L~l~ 225 (443)
....++..+..++ .+|..+. ++++.|++++|.+++..+..+.++++|++|++++|.+.... ..+..+++|++|+++
T Consensus 44 ~~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~ 120 (440)
T 3zyj_A 44 QFSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF 120 (440)
T ss_dssp TSCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred CCCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence 3456777777776 6776554 67888888888888777777888888888888888777666 667777788888888
Q ss_pred cccCCCCCCccccCCCCCcEEEcccCcCcccCChhhhcCCCCCcEEeCCCCc-CCccCCccCcCCCCCCEEecccCcCcc
Q 040495 226 FNHFSGMIPPPIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNN-FTGSIPVSLSNASRLEMIEFSRNQFSG 304 (443)
Q Consensus 226 ~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~~~~L~~L~l~~n~l~~ 304 (443)
+|.++...+..+..+++|++|++++|.++ .++...+..+++|++|++++|+ +....+..+..+++|++|++++|+++.
T Consensus 121 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~ 199 (440)
T 3zyj_A 121 DNRLTTIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE 199 (440)
T ss_dssp SSCCSSCCTTTSCSCSSCCEEECCSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS
T ss_pred CCcCCeeCHhHhhccccCceeeCCCCccc-ccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc
Confidence 88777655556777777777777777776 4555444467777777777743 333333456667777777777777663
Q ss_pred ccchhhhCCCCCCEEEccCCCCcccCCCchhhHhhhcCCCCCCEEEccCCcCcccCChhHhhhccCCCEEeccCCcCeec
Q 040495 305 RVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNRISGT 384 (443)
Q Consensus 305 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~ 384 (443)
+| .+..+++|+.|++++|.+++..+ ..+.++++|++|++++|++++..+..+..+ ++|+.|+|++|++++.
T Consensus 200 -~~-~~~~l~~L~~L~Ls~N~l~~~~~------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~L~~N~l~~~ 270 (440)
T 3zyj_A 200 -IP-NLTPLIKLDELDLSGNHLSAIRP------GSFQGLMHLQKLWMIQSQIQVIERNAFDNL-QSLVEINLAHNNLTLL 270 (440)
T ss_dssp -CC-CCTTCSSCCEEECTTSCCCEECT------TTTTTCTTCCEEECTTCCCCEECTTSSTTC-TTCCEEECTTSCCCCC
T ss_pred -cc-ccCCCcccCEEECCCCccCccCh------hhhccCccCCEEECCCCceeEEChhhhcCC-CCCCEEECCCCCCCcc
Confidence 23 25666666677776666666655 445666666666666666665545444443 5666666666666654
Q ss_pred CchhhhcCCCCCeEeCcCCcCc
Q 040495 385 IPPGIRSHANLNWLTMDSNLFT 406 (443)
Q Consensus 385 ~p~~l~~~~~L~~L~L~~n~~~ 406 (443)
.+..+..+++|+.|+|++|++.
T Consensus 271 ~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 271 PHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp CTTTTSSCTTCCEEECCSSCEE
T ss_pred ChhHhccccCCCEEEcCCCCcc
Confidence 4455566666666666666554
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.9e-28 Score=228.56 Aligned_cols=258 Identities=16% Similarity=0.129 Sum_probs=137.3
Q ss_pred EEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCCCCCchhhcCCCccCeEEccCCCCCCCCChhhhcCCCCceeeccC
Q 040495 76 VTRLDLRNQSIGGPLSPYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSVDT 155 (443)
Q Consensus 76 v~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~ 155 (443)
++..+++.+.+.......+..+++|++|++++|.+++..|..+.++++|++|++++|.+++..+ +..+++|++|++++
T Consensus 12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~ 89 (317)
T 3o53_A 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNN 89 (317)
T ss_dssp EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCS
T ss_pred eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcC
Confidence 4444444444443333334444555555555555554444555555555555555555543322 44444555555544
Q ss_pred CcccccCCccccCCcCccEeeeeccccCccCCccccCCCCCCEEEccCCcCCcccccccCCCCCCEEEcccccCCCCCCc
Q 040495 156 NYLVGEIPSAIGSLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLRLLDIAFNHFSGMIPP 235 (443)
Q Consensus 156 n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~~~~~~~~ 235 (443)
|.+++. ...++|++|++++|.+.+... ..+++|++|++++|.+++..+.
T Consensus 90 n~l~~l-----------------------------~~~~~L~~L~l~~n~l~~~~~--~~~~~L~~L~l~~N~l~~~~~~ 138 (317)
T 3o53_A 90 NYVQEL-----------------------------LVGPSIETLHAANNNISRVSC--SRGQGKKNIYLANNKITMLRDL 138 (317)
T ss_dssp SEEEEE-----------------------------EECTTCCEEECCSSCCSEEEE--CCCSSCEEEECCSSCCCSGGGB
T ss_pred Cccccc-----------------------------cCCCCcCEEECCCCccCCcCc--cccCCCCEEECCCCCCCCccch
Confidence 444311 122445555555554443331 1245566666666666655555
Q ss_pred cccCCCCCcEEEcccCcCcccCChhhhcCCCCCcEEeCCCCcCCccCCccCcCCCCCCEEecccCcCccccchhhhCCCC
Q 040495 236 PIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKN 315 (443)
Q Consensus 236 ~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~ 315 (443)
.+..+++|++|++++|.+++..+..+...+++|++|++++|.+++. +. ...+++|++|++++|++++..+ .+..+++
T Consensus 139 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~l~~-~~~~l~~ 215 (317)
T 3o53_A 139 DEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAFMGP-EFQSAAG 215 (317)
T ss_dssp CTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCEECG-GGGGGTT
T ss_pred hhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-cc-ccccccCCEEECCCCcCCcchh-hhcccCc
Confidence 6666667777777777666444444433466677777777766643 22 2236666777777666664433 3566666
Q ss_pred CCEEEccCCCCcccCCCchhhHhhhcCCCCCCEEEccCCcCc-ccCChhHhhhccCCCEEecc
Q 040495 316 LSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQ-GVLPQSMANFSSTIKQIAMG 377 (443)
Q Consensus 316 L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~p~~~~~~~~~L~~L~L~ 377 (443)
|+.|++++|.++... ..+..+++|++|++++|++. +.+|.++..+ +.|+.++++
T Consensus 216 L~~L~L~~N~l~~l~-------~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~-~~L~~l~l~ 270 (317)
T 3o53_A 216 VTWISLRNNKLVLIE-------KALRFSQNLEHFDLRGNGFHCGTLRDFFSKN-QRVQTVAKQ 270 (317)
T ss_dssp CSEEECTTSCCCEEC-------TTCCCCTTCCEEECTTCCCBHHHHHHHHHTC-HHHHHHHHH
T ss_pred ccEEECcCCcccchh-------hHhhcCCCCCEEEccCCCccCcCHHHHHhcc-ccceEEECC
Confidence 666666666665432 23455566666666666665 4444444442 455555555
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.3e-29 Score=258.39 Aligned_cols=350 Identities=13% Similarity=0.115 Sum_probs=218.5
Q ss_pred CcEEEEEcCCCCCc---cccccc------------ccCCCCCCEEeCCCCcCCCCCchhhcCC--CccCeEEccCCC-CC
Q 040495 74 QRVTRLDLRNQSIG---GPLSPY------------VGNLSFLRYINLANNGFLGEIPPQIGRL--NMLEGLVLSNNS-FS 135 (443)
Q Consensus 74 ~~v~~L~l~~~~~~---~~~~~~------------~~~l~~L~~L~L~~n~~~~~~~~~l~~l--~~L~~L~l~~n~-~~ 135 (443)
.++++|+++++... +.+|.. ...+++|++|+|++|.+++..+..++.. ++|++|++++|. ++
T Consensus 73 ~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~ 152 (592)
T 3ogk_B 73 PNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFT 152 (592)
T ss_dssp TTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEE
T ss_pred CCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcC
Confidence 67999999775321 222222 2378999999999999887767777663 449999999986 22
Q ss_pred C-CCChhhhcCCCCceeeccCCccccc----CCccccCCcCccEeeeeccccCc----cCCccccCCCCCCEEEccCCcC
Q 040495 136 G-TIPTNLSRRSNLIELSVDTNYLVGE----IPSAIGSLFKLERLFIFHNHITG----QLPASIGNLSSLLAFDVRENIL 206 (443)
Q Consensus 136 ~-~~p~~l~~l~~L~~L~l~~n~l~~~----~p~~l~~l~~L~~L~l~~n~l~~----~~~~~l~~l~~L~~L~l~~n~l 206 (443)
. .++.....+++|++|++++|.+++. ++..+..+++|++|++++|.+++ .++..+.++++|++|++++|.+
T Consensus 153 ~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~ 232 (592)
T 3ogk_B 153 TDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEI 232 (592)
T ss_dssp HHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBG
T ss_pred HHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccH
Confidence 1 1233345889999999999998755 33345678999999999999873 3444567899999999999988
Q ss_pred CcccccccCCCCCCEEEcccccCC---CCCCccccCCCCCcEEEcccCcCcccCChhhhcCCCCCcEEeCCCCcCCcc--
Q 040495 207 WGRIDSLVQLRNLRLLDIAFNHFS---GMIPPPIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGS-- 281 (443)
Q Consensus 207 ~~~~~~l~~l~~L~~L~l~~n~~~---~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~-- 281 (443)
.+....+..+++|++|+++..... +..+..+..+++|+.++++++... .+|..+. .+++|++|++++|.+++.
T Consensus 233 ~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~l~~~~~-~~~~L~~L~Ls~~~l~~~~~ 310 (592)
T 3ogk_B 233 LELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPN-EMPILFP-FAAQIRKLDLLYALLETEDH 310 (592)
T ss_dssp GGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTT-TGGGGGG-GGGGCCEEEETTCCCCHHHH
T ss_pred HHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchh-HHHHHHh-hcCCCcEEecCCCcCCHHHH
Confidence 776566777788888888743221 122233344444555544443221 2332222 344445555544443322
Q ss_pred -----------------------CCccCcCCCCCCEEeccc-----------CcCccccchh-hhCCCCCCEEEccCCCC
Q 040495 282 -----------------------IPVSLSNASRLEMIEFSR-----------NQFSGRVSVD-FSRLKNLSFLNMGINNL 326 (443)
Q Consensus 282 -----------------------~~~~l~~~~~L~~L~l~~-----------n~l~~~~~~~-~~~l~~L~~L~l~~n~l 326 (443)
++.....+++|++|++++ +.+++..... ...+++|++|+++.|.+
T Consensus 311 ~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l 390 (592)
T 3ogk_B 311 CTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDI 390 (592)
T ss_dssp HHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCC
T ss_pred HHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCc
Confidence 222223445555555552 3343322211 23455666666655555
Q ss_pred cccCCCchhhHhhhc-CCCCCCEEEcc----CCcCccc-----CChhHhhhccCCCEEeccCCc--CeecCchhhh-cCC
Q 040495 327 GTRTANELDFINLLA-NCSKLERLYFN----RNRFQGV-----LPQSMANFSSTIKQIAMGRNR--ISGTIPPGIR-SHA 393 (443)
Q Consensus 327 ~~~~~~~~~~~~~~~-~~~~L~~L~l~----~n~l~~~-----~p~~~~~~~~~L~~L~L~~n~--l~~~~p~~l~-~~~ 393 (443)
++... ..+. .+++|+.|+++ .|.+++. ++..+.. +++|+.|++++|. +++..+..+. .++
T Consensus 391 ~~~~~------~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~-~~~L~~L~L~~~~~~l~~~~~~~~~~~~~ 463 (592)
T 3ogk_B 391 TNESL------ESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIG-CKKLRRFAFYLRQGGLTDLGLSYIGQYSP 463 (592)
T ss_dssp CHHHH------HHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHH-CTTCCEEEEECCGGGCCHHHHHHHHHSCT
T ss_pred cHHHH------HHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHh-CCCCCEEEEecCCCCccHHHHHHHHHhCc
Confidence 44332 2233 36777777775 5566642 2222333 4678888886543 6665555554 478
Q ss_pred CCCeEeCcCCcCcc-cCchhhcCCCCCCEEEccCCcCccc
Q 040495 394 NLNWLTMDSNLFTG-TIPPVIGELKNLQLLDLGGNFLQGS 432 (443)
Q Consensus 394 ~L~~L~L~~n~~~~-~~p~~~~~l~~L~~L~l~~n~l~~~ 432 (443)
+|++|++++|++++ .++..+..+++|++|++++|++++.
T Consensus 464 ~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 503 (592)
T 3ogk_B 464 NVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSER 503 (592)
T ss_dssp TCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHH
T ss_pred cceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHH
Confidence 89999999998876 4556667889999999999998754
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.3e-27 Score=236.83 Aligned_cols=234 Identities=18% Similarity=0.234 Sum_probs=165.4
Q ss_pred CccEeeeeccccCccCCccccCCCCCCEEEccCCcCCcccccccCCCCCCEEEcccccCCCCCCccccCCCCCcEEEccc
Q 040495 171 KLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLRLLDIAFNHFSGMIPPPIFNISSLEVISLSE 250 (443)
Q Consensus 171 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~ 250 (443)
+|++|++++|.+++..|..+..+++|++|++++|.+.+..+ +..+++|++|++++|.+++.. ..++|++|++++
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~L~L~~ 108 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELL-----VGPSIETLHAAN 108 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEE-----ECTTCCEEECCS
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCC-----CCCCcCEEECcC
Confidence 45555555555544444445555555555555555443333 455566666666666655321 226777777777
Q ss_pred CcCcccCChhhhcCCCCCcEEeCCCCcCCccCCccCcCCCCCCEEecccCcCccccchhhh-CCCCCCEEEccCCCCccc
Q 040495 251 NRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFS-RLKNLSFLNMGINNLGTR 329 (443)
Q Consensus 251 n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~ 329 (443)
|.+++..+ . .+++|+.|++++|.+++..|..+..+++|+.|++++|.+++..|..+. .+++|+.|++++|.+++.
T Consensus 109 N~l~~~~~-~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~ 184 (487)
T 3oja_A 109 NNISRVSC-S---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV 184 (487)
T ss_dssp SCCCCEEE-C---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE
T ss_pred CcCCCCCc-c---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc
Confidence 77764332 2 457788888888888877777788888888888888888887777765 688888888888888877
Q ss_pred CCCchhhHhhhcCCCCCCEEEccCCcCcccCChhHhhhccCCCEEeccCCcCeecCchhhhcCCCCCeEeCcCCcCc-cc
Q 040495 330 TANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNRISGTIPPGIRSHANLNWLTMDSNLFT-GT 408 (443)
Q Consensus 330 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~n~~~-~~ 408 (443)
.+ ...+++|++|++++|.+++ +|+.+..+ ++|+.|++++|.+++ +|..+..+++|+.|++++|.+. +.
T Consensus 185 ~~--------~~~l~~L~~L~Ls~N~l~~-~~~~~~~l-~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~ 253 (487)
T 3oja_A 185 KG--------QVVFAKLKTLDLSSNKLAF-MGPEFQSA-AGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGT 253 (487)
T ss_dssp EC--------CCCCTTCCEEECCSSCCCE-ECGGGGGG-TTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHH
T ss_pred cc--------cccCCCCCEEECCCCCCCC-CCHhHcCC-CCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcc
Confidence 44 3457888899999998885 45556654 788999999998885 6777888888999999999887 77
Q ss_pred CchhhcCCCCCCEEEcc
Q 040495 409 IPPVIGELKNLQLLDLG 425 (443)
Q Consensus 409 ~p~~~~~l~~L~~L~l~ 425 (443)
+|..+..++.|+.++++
T Consensus 254 ~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 254 LRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp HHHHHTTCHHHHHHHHH
T ss_pred hHHHHHhCCCCcEEecc
Confidence 78888888888888875
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.4e-25 Score=205.25 Aligned_cols=215 Identities=19% Similarity=0.229 Sum_probs=143.5
Q ss_pred CCCCCccceeeCCCCCcEEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCCCCCchhhcCCCccCeEEccCCCCCCCC
Q 040495 59 MSLCQWTGVTCGRRHQRVTRLDLRNQSIGGPLSPYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTI 138 (443)
Q Consensus 59 ~~~c~w~gv~c~~~~~~v~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~ 138 (443)
.+.|.|.|+.|... ..++.++++++.++. +|..+. +++++|++++|.+++..+..+.++++|++|++++|.++...
T Consensus 2 ~~~C~~~~~~C~c~-~~~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~ 77 (270)
T 2o6q_A 2 EALCKKDGGVCSCN-NNKNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLP 77 (270)
T ss_dssp CCCBGGGTCSBEEE-TTTTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCC
T ss_pred CccCCCCCCCCEeC-CCCCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeC
Confidence 36899999998653 456789999998875 554443 67999999999998766678899999999999999998555
Q ss_pred ChhhhcCCCCceeeccCCcccccCCccccCCcCccEeeeeccccCccCCccccCCCCCCEEEccCCcCCccc-ccccCCC
Q 040495 139 PTNLSRRSNLIELSVDTNYLVGEIPSAIGSLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRI-DSLVQLR 217 (443)
Q Consensus 139 p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~-~~l~~l~ 217 (443)
+..|.++++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.... ..+..++
T Consensus 78 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 157 (270)
T 2o6q_A 78 AGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLT 157 (270)
T ss_dssp TTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred hhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCc
Confidence 556678889999999988888655566778888888888888887666656666666666666666555544 3344555
Q ss_pred CCCEEEcccccCCCCCCccccCCCCCcEEEcccCcCcccCChhhhcCCCCCcEEeCCCCcC
Q 040495 218 NLRLLDIAFNHFSGMIPPPIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNF 278 (443)
Q Consensus 218 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l 278 (443)
+|++|++++|.+.+..+..+..+++|++|++++|.++ .+|...+..+++|+.|++++|.+
T Consensus 158 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 158 SLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK-RVPEGAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSCB
T ss_pred ccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCC-cCCHHHhccccCCCEEEecCCCe
Confidence 5555555555554433334444444444444444444 23332222334444444444433
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.5e-26 Score=227.67 Aligned_cols=235 Identities=17% Similarity=0.130 Sum_probs=141.4
Q ss_pred ccCeEEccCCCCCCCCChhhhcCCCCceeeccCCcccccCCccccCCcCccEeeeeccccCccCCccccCCCCCCEEEcc
Q 040495 123 MLEGLVLSNNSFSGTIPTNLSRRSNLIELSVDTNYLVGEIPSAIGSLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVR 202 (443)
Q Consensus 123 ~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 202 (443)
+|++|++++|.+++..|..|..+++|++|++++|.+++..| ++.+++|++|++++|.+++. | ..++|++|+++
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l-~----~~~~L~~L~L~ 107 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQEL-L----VGPSIETLHAA 107 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEE-E----ECTTCCEEECC
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCC-C----CCCCcCEEECc
Confidence 45555555555554444555555555555555555553333 55555555555555555522 1 22556666666
Q ss_pred CCcCCcccccccCCCCCCEEEcccccCCCCCCccccCCCCCcEEEcccCcCcccCChhhhcCCCCCcEEeCCCCcCCccC
Q 040495 203 ENILWGRIDSLVQLRNLRLLDIAFNHFSGMIPPPIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSI 282 (443)
Q Consensus 203 ~n~l~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~ 282 (443)
+|.+.+.... .+++|+.|++++|.+++..|..+..+++|++|++++|.+++..|..+...+++|++|++++|.+++..
T Consensus 108 ~N~l~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~ 185 (487)
T 3oja_A 108 NNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVK 185 (487)
T ss_dssp SSCCCCEEEC--CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEE
T ss_pred CCcCCCCCcc--ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccccc
Confidence 6655554421 24667777777777776666666777777777777777776566555445677777777777776542
Q ss_pred CccCcCCCCCCEEecccCcCccccchhhhCCCCCCEEEccCCCCcccCCCchhhHhhhcCCCCCCEEEccCCcCc-ccCC
Q 040495 283 PVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQ-GVLP 361 (443)
Q Consensus 283 ~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~p 361 (443)
+ ...+++|+.|++++|.+++..+. +..+++|+.|++++|.+++.+. .+..+++|+.|++++|++. +.+|
T Consensus 186 ~--~~~l~~L~~L~Ls~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~lp~-------~l~~l~~L~~L~l~~N~l~c~~~~ 255 (487)
T 3oja_A 186 G--QVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLIEK-------ALRFSQNLEHFDLRGNGFHCGTLR 255 (487)
T ss_dssp C--CCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCEECT-------TCCCCTTCCEEECTTCCBCHHHHH
T ss_pred c--cccCCCCCEEECCCCCCCCCCHh-HcCCCCccEEEecCCcCcccch-------hhccCCCCCEEEcCCCCCcCcchH
Confidence 2 33467777777777777764443 6677777777777777765332 3556677777777777766 4445
Q ss_pred hhHhhhccCCCEEecc
Q 040495 362 QSMANFSSTIKQIAMG 377 (443)
Q Consensus 362 ~~~~~~~~~L~~L~L~ 377 (443)
.++..+ +.++.++++
T Consensus 256 ~~~~~l-~~L~~l~~~ 270 (487)
T 3oja_A 256 DFFSKN-QRVQTVAKQ 270 (487)
T ss_dssp HHHTTC-HHHHHHHHH
T ss_pred HHHHhC-CCCcEEecc
Confidence 544442 455555553
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=99.94 E-value=2.9e-28 Score=248.47 Aligned_cols=355 Identities=12% Similarity=0.146 Sum_probs=238.9
Q ss_pred CcEEEEEcCCCCCccccccccc-CCCCCCEEeCCCC-cCCCC-CchhhcCCCccCeEEccCCCCCCCCChhhh----cCC
Q 040495 74 QRVTRLDLRNQSIGGPLSPYVG-NLSFLRYINLANN-GFLGE-IPPQIGRLNMLEGLVLSNNSFSGTIPTNLS----RRS 146 (443)
Q Consensus 74 ~~v~~L~l~~~~~~~~~~~~~~-~l~~L~~L~L~~n-~~~~~-~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~----~l~ 146 (443)
.++++|+++++.+.+..+..+. .+++|++|++++| .++.. ++..+.++++|++|++++|.+++..+..+. .++
T Consensus 105 ~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~ 184 (594)
T 2p1m_B 105 TWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYT 184 (594)
T ss_dssp TTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCC
T ss_pred CCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCC
Confidence 4678888888877766555554 5788888888877 44432 444445788888888888877655544443 556
Q ss_pred CCceeeccCCc--ccc-cCCccccCCcCccEeeeecc-ccCccCCccccCCCCCCEEEccCCcC----------------
Q 040495 147 NLIELSVDTNY--LVG-EIPSAIGSLFKLERLFIFHN-HITGQLPASIGNLSSLLAFDVRENIL---------------- 206 (443)
Q Consensus 147 ~L~~L~l~~n~--l~~-~~p~~l~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L~l~~n~l---------------- 206 (443)
+|++|++++|. +.. .++..+..+++|++|++++| .+. .++..+..+++|++|++..+..
T Consensus 185 ~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~-~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~ 263 (594)
T 2p1m_B 185 SLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLE-KLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSG 263 (594)
T ss_dssp CCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHH-HHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHT
T ss_pred cCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHH-HHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhc
Confidence 88888888775 221 11222344678888888877 333 3555666677777776544311
Q ss_pred ----------Ccc----c-ccccCCCCCCEEEcccccCCCCCC-ccccCCCCCcEEEcccCcCcccCChhhhcCCCCCcE
Q 040495 207 ----------WGR----I-DSLVQLRNLRLLDIAFNHFSGMIP-PPIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQ 270 (443)
Q Consensus 207 ----------~~~----~-~~l~~l~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~ 270 (443)
... . ..+..+++|++|++++|.+++... ..+..+++|++|++++| ++......+...+++|++
T Consensus 264 ~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~ 342 (594)
T 2p1m_B 264 CKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRE 342 (594)
T ss_dssp CTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCE
T ss_pred CCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCE
Confidence 100 1 122246788888888888654322 22457788999998887 442322333435788999
Q ss_pred EeCC---------CCcCCccCCccCc-CCCCCCEEecccCcCccccchhhh-CCCCCCEEEcc--C----CCCcccCCCc
Q 040495 271 LSPN---------GNNFTGSIPVSLS-NASRLEMIEFSRNQFSGRVSVDFS-RLKNLSFLNMG--I----NNLGTRTANE 333 (443)
Q Consensus 271 L~L~---------~n~l~~~~~~~l~-~~~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~--~----n~l~~~~~~~ 333 (443)
|++. .+.+++.....+. .+++|++|.+..+.+++.....+. .+++|+.|+++ + +.++.... +
T Consensus 343 L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~-~ 421 (594)
T 2p1m_B 343 LRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPL-D 421 (594)
T ss_dssp EEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCT-H
T ss_pred EEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCch-h
Confidence 9883 3455543333333 478999999888888877666665 58999999998 3 45543221 1
Q ss_pred hhhHhhhcCCCCCCEEEccCCcCcccCChhHhhhccCCCEEeccCCcCeecCchhh-hcCCCCCeEeCcCCcCcccCch-
Q 040495 334 LDFINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNRISGTIPPGI-RSHANLNWLTMDSNLFTGTIPP- 411 (443)
Q Consensus 334 ~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l-~~~~~L~~L~L~~n~~~~~~p~- 411 (443)
..+...+..+++|++|++++ .+++..+..+....++|+.|++++|.+++..+..+ ..+++|++|++++|.+++..+.
T Consensus 422 ~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~ 500 (594)
T 2p1m_B 422 IGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLA 500 (594)
T ss_dssp HHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHH
T ss_pred hHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHH
Confidence 22334477889999999987 77766666666656899999999999987766555 7789999999999999755544
Q ss_pred hhcCCCCCCEEEccCCcCccc
Q 040495 412 VIGELKNLQLLDLGGNFLQGS 432 (443)
Q Consensus 412 ~~~~l~~L~~L~l~~n~l~~~ 432 (443)
....+++|++|++++|+++..
T Consensus 501 ~~~~l~~L~~L~l~~~~~~~~ 521 (594)
T 2p1m_B 501 NASKLETMRSLWMSSCSVSFG 521 (594)
T ss_dssp TGGGGGGSSEEEEESSCCBHH
T ss_pred HHHhCCCCCEEeeeCCCCCHH
Confidence 445589999999999998643
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.9e-24 Score=198.47 Aligned_cols=207 Identities=21% Similarity=0.259 Sum_probs=96.7
Q ss_pred CCEEEcccccCCCCCCccccCCCCCcEEEcccCcCcccCChhhhcCCCCCcEEeCCCCcCCccCCccCcCCCCCCEEecc
Q 040495 219 LRLLDIAFNHFSGMIPPPIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFS 298 (443)
Q Consensus 219 L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~ 298 (443)
+++|++++|.+.+..+..+.++++|++|++++|.++ .++...+..+++|++|++++|++++..+..+..+++|++|+++
T Consensus 30 l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 108 (276)
T 2z62_A 30 TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (276)
T ss_dssp CCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred ccEEECCCCcccccCHhHhccccCCcEEECCCCcCC-ccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence 444444444444333334444444444444444444 2222222244445555555554444444444455555555555
Q ss_pred cCcCccccchhhhCCCCCCEEEccCCCCcccC-CCchhhHhhhcCCCCCCEEEccCCcCcccCChhHhhhccCCC----E
Q 040495 299 RNQFSGRVSVDFSRLKNLSFLNMGINNLGTRT-ANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIK----Q 373 (443)
Q Consensus 299 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~----~ 373 (443)
+|++.+..+..+..+++|++|++++|.+++.. + ..+..+++|++|++++|++++..+..+..+ +.++ .
T Consensus 109 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l-~~L~~l~l~ 181 (276)
T 2z62_A 109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLP------EYFSNLTNLEHLDLSSNKIQSIYCTDLRVL-HQMPLLNLS 181 (276)
T ss_dssp TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCC------GGGGGCTTCCEEECCSSCCCEECGGGGHHH-HTCTTCCEE
T ss_pred CCCccccCchhcccCCCCCEEECcCCccceecCc------hhhccCCCCCEEECCCCCCCcCCHHHhhhh-hhcccccee
Confidence 55554444434455555555555555554422 2 334455555555555555554333333332 3343 5
Q ss_pred EeccCCcCeecCchhhhcCCCCCeEeCcCCcCcccCchhhcCCCCCCEEEccCCcCcccCC
Q 040495 374 IAMGRNRISGTIPPGIRSHANLNWLTMDSNLFTGTIPPVIGELKNLQLLDLGGNFLQGSIP 434 (443)
Q Consensus 374 L~L~~n~l~~~~p~~l~~~~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p 434 (443)
|++++|++++..+. .....+|++|++++|.+++..+..+..+++|++|++++|++++..|
T Consensus 182 L~ls~n~l~~~~~~-~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 182 LDLSLNPMNFIQPG-AFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp EECCSSCCCEECTT-SSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred eecCCCcccccCcc-ccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence 55555555533222 2222355555555555553333344555555566665555555443
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
Probab=99.92 E-value=7.9e-25 Score=200.51 Aligned_cols=226 Identities=17% Similarity=0.237 Sum_probs=108.0
Q ss_pred CccEeeeeccccCccCCccccCCCCCCEEEccCCcCCcccccccCCCCCCEEEcccccCCCCCCccccCCCCCcEEEccc
Q 040495 171 KLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLRLLDIAFNHFSGMIPPPIFNISSLEVISLSE 250 (443)
Q Consensus 171 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~ 250 (443)
++..+++..+.+.+. .....+++|+.|++.+|.+... ..+..+++|++|++++|.+.+. ..+..+++|++|++++
T Consensus 20 ~l~~l~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~ 94 (272)
T 3rfs_A 20 ETIKANLKKKSVTDA--VTQNELNSIDQIIANNSDIKSV-QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTG 94 (272)
T ss_dssp HHHHHHHTCSCTTSE--ECHHHHTTCCEEECTTSCCCCC-TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTT
T ss_pred HHHHHHhcCcccccc--cccccccceeeeeeCCCCcccc-cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCC
Confidence 344444444444422 2234555666666666554432 3344555555555555555431 2444555555555555
Q ss_pred CcCcccCChhhhcCCCCCcEEeCCCCcCCccCCccCcCCCCCCEEecccCcCccccchhhhCCCCCCEEEccCCCCcccC
Q 040495 251 NRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLGTRT 330 (443)
Q Consensus 251 n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 330 (443)
|.++ .++...+..+++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|+.|++++|.+++..
T Consensus 95 n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 173 (272)
T 3rfs_A 95 NQLQ-SLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLP 173 (272)
T ss_dssp SCCC-CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred CccC-ccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccC
Confidence 5554 233222224455555555555555444444444555555555555554444444444444444444444444433
Q ss_pred CCchhhHhhhcCCCCCCEEEccCCcCcccCChhHhhhccCCCEEeccCCcCeecCchhhhcCCCCCeEeCcCCcCcccCc
Q 040495 331 ANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNRISGTIPPGIRSHANLNWLTMDSNLFTGTIP 410 (443)
Q Consensus 331 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~n~~~~~~p 410 (443)
+ ..+..++ +|+.|++++|++++..|..+..+++|++|++++|++.+.
T Consensus 174 ~------~~~~~l~-------------------------~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-- 220 (272)
T 3rfs_A 174 E------GVFDKLT-------------------------QLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-- 220 (272)
T ss_dssp T------TTTTTCT-------------------------TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC--
T ss_pred H------HHhcCCc-------------------------cCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc--
Confidence 3 2234444 455555555555544444444555555555555544422
Q ss_pred hhhcCCCCCCEEEccCCcCcccCCccccCC
Q 040495 411 PVIGELKNLQLLDLGGNFLQGSIPSSLGNL 440 (443)
Q Consensus 411 ~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l 440 (443)
+++|+.++++.|.++|.+|.+++++
T Consensus 221 -----~~~l~~l~~~~n~~~g~ip~~~~~~ 245 (272)
T 3rfs_A 221 -----CPGIRYLSEWINKHSGVVRNSAGSV 245 (272)
T ss_dssp -----TTTTHHHHHHHHHTGGGBBCTTSCB
T ss_pred -----CcHHHHHHHHHHhCCCcccCccccc
Confidence 2344555555555555555544433
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=3.9e-24 Score=196.42 Aligned_cols=206 Identities=20% Similarity=0.194 Sum_probs=111.7
Q ss_pred CCCCEEeCCCCcCCCCCchhhcCCCccCeEEccCCCCCCCCChhhhcCCCCceeeccCCcccccCCccccCCcCccEeee
Q 040495 98 SFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSVDTNYLVGEIPSAIGSLFKLERLFI 177 (443)
Q Consensus 98 ~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l 177 (443)
++|++|++++|.+++..+..+.++++|++|++++|.+++..+..+.++++|++|++++|.+++..+..+.++++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 45777777777776555556677777777777777766555556666666666666666666555555566666666666
Q ss_pred eccccCccCCccccCCCCCCEEEccCCcCCcccccccCCCCCCEEEcccccCCCC-CCccccCCCCCcEEEcccCcCccc
Q 040495 178 FHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLRLLDIAFNHFSGM-IPPPIFNISSLEVISLSENRFTGS 256 (443)
Q Consensus 178 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~~~~~-~~~~l~~l~~L~~L~l~~n~l~~~ 256 (443)
++|.+++..+..+. .+++|++|++++|.+.+. +|..+..+++|++|++++|.+++.
T Consensus 108 ~~n~l~~~~~~~~~-----------------------~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~ 164 (276)
T 2z62_A 108 VETNLASLENFPIG-----------------------HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164 (276)
T ss_dssp TTSCCCCSTTCCCT-----------------------TCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEE
T ss_pred CCCCccccCchhcc-----------------------cCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcC
Confidence 66655543333333 344455555555554432 355555555566666666555532
Q ss_pred CChhhhcCCCCCc----EEeCCCCcCCccCCccCcCCCCCCEEecccCcCccccchhhhCCCCCCEEEccCCCCcc
Q 040495 257 LPVDAGVNLPNLR----QLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLGT 328 (443)
Q Consensus 257 ~~~~~~~~~~~L~----~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 328 (443)
.+..+. .+++++ +|++++|.+++..+..+. ..+|++|++++|++++..+..+..+++|+.|++++|.+.+
T Consensus 165 ~~~~~~-~l~~L~~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 238 (276)
T 2z62_A 165 YCTDLR-VLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 238 (276)
T ss_dssp CGGGGH-HHHTCTTCCEEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCC
T ss_pred CHHHhh-hhhhccccceeeecCCCcccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCcccc
Confidence 222221 233333 555555555533332222 2345555555555554444444455555555555554444
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=99.92 E-value=5.6e-27 Score=238.99 Aligned_cols=352 Identities=13% Similarity=0.086 Sum_probs=229.7
Q ss_pred CcEEEEEcCCCCCccc---c------------cccccCCCCCCEEeCCCCcCCCCCchhhc-CCCccCeEEccCC-CCCC
Q 040495 74 QRVTRLDLRNQSIGGP---L------------SPYVGNLSFLRYINLANNGFLGEIPPQIG-RLNMLEGLVLSNN-SFSG 136 (443)
Q Consensus 74 ~~v~~L~l~~~~~~~~---~------------~~~~~~l~~L~~L~L~~n~~~~~~~~~l~-~l~~L~~L~l~~n-~~~~ 136 (443)
.+++.|+++++..... . +.....+++|++|++++|.+++..+..+. .+++|++|++++| .++.
T Consensus 66 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~ 145 (594)
T 2p1m_B 66 PKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFST 145 (594)
T ss_dssp TTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEH
T ss_pred CCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCH
Confidence 4678888887653211 1 11234678999999999988877666675 6899999999988 4543
Q ss_pred C-CChhhhcCCCCceeeccCCcccccCCccc----cCCcCccEeeeeccc--cCcc-CCccccCCCCCCEEEccCC-cCC
Q 040495 137 T-IPTNLSRRSNLIELSVDTNYLVGEIPSAI----GSLFKLERLFIFHNH--ITGQ-LPASIGNLSSLLAFDVREN-ILW 207 (443)
Q Consensus 137 ~-~p~~l~~l~~L~~L~l~~n~l~~~~p~~l----~~l~~L~~L~l~~n~--l~~~-~~~~l~~l~~L~~L~l~~n-~l~ 207 (443)
. ++..+.++++|++|++++|.+++..+..+ ..+++|++|++++|. ++.. ++.....+++|++|++++| .+.
T Consensus 146 ~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~ 225 (594)
T 2p1m_B 146 DGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLE 225 (594)
T ss_dssp HHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHH
T ss_pred HHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHH
Confidence 2 44445589999999999998775444433 367799999999886 2211 1122345799999999988 333
Q ss_pred cccccccCCCCCCEEEcccccC--------------------------CC----CCCccccCCCCCcEEEcccCcCcccC
Q 040495 208 GRIDSLVQLRNLRLLDIAFNHF--------------------------SG----MIPPPIFNISSLEVISLSENRFTGSL 257 (443)
Q Consensus 208 ~~~~~l~~l~~L~~L~l~~n~~--------------------------~~----~~~~~l~~l~~L~~L~l~~n~l~~~~ 257 (443)
+....+..+++|++|+++.+.. .. .++..+..+++|++|++++|.+++..
T Consensus 226 ~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~ 305 (594)
T 2p1m_B 226 KLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYD 305 (594)
T ss_dssp HHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHH
T ss_pred HHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHH
Confidence 3225566778888888654421 11 11222224567777777777765443
Q ss_pred ChhhhcCCCCCcEEeCCCCcCCcc-CCccCcCCCCCCEEeccc---------CcCccccchhhh-CCCCCCEEEccCCCC
Q 040495 258 PVDAGVNLPNLRQLSPNGNNFTGS-IPVSLSNASRLEMIEFSR---------NQFSGRVSVDFS-RLKNLSFLNMGINNL 326 (443)
Q Consensus 258 ~~~~~~~~~~L~~L~L~~n~l~~~-~~~~l~~~~~L~~L~l~~---------n~l~~~~~~~~~-~l~~L~~L~l~~n~l 326 (443)
...+...+++|++|++++| +++. ++.....+++|++|++.+ +.+++.....+. .+++|+.|++..|.+
T Consensus 306 l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l 384 (594)
T 2p1m_B 306 LVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQM 384 (594)
T ss_dssp HHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCC
T ss_pred HHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCc
Confidence 3333446777777777766 3322 222233467777777733 345443333333 477788887777777
Q ss_pred cccCCCchhhHhhh-cCCCCCCEEEcc--C----CcCcccCCh-----hHhhhccCCCEEeccCCcCeecCchhhhc-CC
Q 040495 327 GTRTANELDFINLL-ANCSKLERLYFN--R----NRFQGVLPQ-----SMANFSSTIKQIAMGRNRISGTIPPGIRS-HA 393 (443)
Q Consensus 327 ~~~~~~~~~~~~~~-~~~~~L~~L~l~--~----n~l~~~~p~-----~~~~~~~~L~~L~L~~n~l~~~~p~~l~~-~~ 393 (443)
++... ..+ ..+++|++|+++ + +.+++ .|. .+...+++|+.|++++ .+++..+..+.. ++
T Consensus 385 ~~~~~------~~l~~~~~~L~~L~L~~~~~~~~~~l~~-~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~ 456 (594)
T 2p1m_B 385 TNAAL------ITIARNRPNMTRFRLCIIEPKAPDYLTL-EPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAK 456 (594)
T ss_dssp CHHHH------HHHHHHCTTCCEEEEEESSTTCCCTTTC-CCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCT
T ss_pred CHHHH------HHHHhhCCCcceeEeecccCCCcccccC-CchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhch
Confidence 65433 223 357889999998 4 55552 221 1122357899999977 677666666665 88
Q ss_pred CCCeEeCcCCcCcccCchhh-cCCCCCCEEEccCCcCcccCC
Q 040495 394 NLNWLTMDSNLFTGTIPPVI-GELKNLQLLDLGGNFLQGSIP 434 (443)
Q Consensus 394 ~L~~L~L~~n~~~~~~p~~~-~~l~~L~~L~l~~n~l~~~~p 434 (443)
+|++|++++|.+++..+..+ ..+++|++|++++|.+++..+
T Consensus 457 ~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~ 498 (594)
T 2p1m_B 457 KMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKAL 498 (594)
T ss_dssp TCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHH
T ss_pred hccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHH
Confidence 99999999999986666555 668999999999999975443
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.92 E-value=6.6e-26 Score=216.54 Aligned_cols=268 Identities=14% Similarity=0.165 Sum_probs=156.6
Q ss_pred EEcCCCCCcccccccccCCCCCCEEeCCCCcCCCCCc----hhhcCCC-ccCeEEccCCCCCCCCChhhhcC-----CCC
Q 040495 79 LDLRNQSIGGPLSPYVGNLSFLRYINLANNGFLGEIP----PQIGRLN-MLEGLVLSNNSFSGTIPTNLSRR-----SNL 148 (443)
Q Consensus 79 L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~----~~l~~l~-~L~~L~l~~n~~~~~~p~~l~~l-----~~L 148 (443)
.+++.+.++|.+|..+...++|++|++++|.+++..+ ..+.+++ +|++|++++|.+++..+..+..+ ++|
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 5677778887777766666668888888888876655 6677777 78888888888877666666654 778
Q ss_pred ceeeccCCcccccCCcc----ccCC-cCccEeeeeccccCccCCcccc----C-CCCCCEEEccCCcCCccc-ccccCCC
Q 040495 149 IELSVDTNYLVGEIPSA----IGSL-FKLERLFIFHNHITGQLPASIG----N-LSSLLAFDVRENILWGRI-DSLVQLR 217 (443)
Q Consensus 149 ~~L~l~~n~l~~~~p~~----l~~l-~~L~~L~l~~n~l~~~~~~~l~----~-l~~L~~L~l~~n~l~~~~-~~l~~l~ 217 (443)
++|++++|.+++..+.. +..+ ++|++|++++|.+++..+..+. . .++|++|++++|.+.... ..
T Consensus 83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~----- 157 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDE----- 157 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHH-----
T ss_pred cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHH-----
Confidence 88888888777554443 3333 6777777777777654443332 2 235555555555444221 11
Q ss_pred CCCEEEcccccCCCCCCccccCCC-CCcEEEcccCcCcccCChhhh---cCC-CCCcEEeCCCCcCCcc----CCccCcC
Q 040495 218 NLRLLDIAFNHFSGMIPPPIFNIS-SLEVISLSENRFTGSLPVDAG---VNL-PNLRQLSPNGNNFTGS----IPVSLSN 288 (443)
Q Consensus 218 ~L~~L~l~~n~~~~~~~~~l~~l~-~L~~L~l~~n~l~~~~~~~~~---~~~-~~L~~L~L~~n~l~~~----~~~~l~~ 288 (443)
++..+...+ +|++|++++|.+++..+..+. ... ++|++|++++|.+++. ++..+..
T Consensus 158 ---------------l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~ 222 (362)
T 3goz_A 158 ---------------LIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSS 222 (362)
T ss_dssp ---------------HHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHH
T ss_pred ---------------HHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhc
Confidence 111122222 555555555555433332211 123 3666666666665532 3333333
Q ss_pred -CCCCCEEecccCcCccccch----hhhCCCCCCEEEccCCCCcccCCCch-hhHhhhcCCCCCCEEEccCCcCcccCCh
Q 040495 289 -ASRLEMIEFSRNQFSGRVSV----DFSRLKNLSFLNMGINNLGTRTANEL-DFINLLANCSKLERLYFNRNRFQGVLPQ 362 (443)
Q Consensus 289 -~~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~~~~~~~~~L~~L~l~~n~l~~~~p~ 362 (443)
.++|++|++++|.+++..+. .+..+++|+.|++++|.+....+... .....+..+++|++|++++|++.+..+.
T Consensus 223 ~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~~ 302 (362)
T 3goz_A 223 IPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSI 302 (362)
T ss_dssp SCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGCH
T ss_pred CCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcchH
Confidence 34677777777766654432 23455667777777766544433211 1223466777788888888888766555
Q ss_pred hHhh
Q 040495 363 SMAN 366 (443)
Q Consensus 363 ~~~~ 366 (443)
.+..
T Consensus 303 ~~~~ 306 (362)
T 3goz_A 303 PISN 306 (362)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
Probab=99.91 E-value=2e-24 Score=197.85 Aligned_cols=229 Identities=19% Similarity=0.232 Sum_probs=193.8
Q ss_pred CCCceeeccCCcccccCCccccCCcCccEeeeeccccCccCCccccCCCCCCEEEccCCcCCcccccccCCCCCCEEEcc
Q 040495 146 SNLIELSVDTNYLVGEIPSAIGSLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLRLLDIA 225 (443)
Q Consensus 146 ~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~ 225 (443)
.++..+++..+.+... .....+++|+.|++++|.++. + ..+..+++|++|++++|.+.+. ..+..+++|++|+++
T Consensus 19 ~~l~~l~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~ 93 (272)
T 3rfs_A 19 AETIKANLKKKSVTDA--VTQNELNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHDI-SALKELTNLTYLILT 93 (272)
T ss_dssp HHHHHHHHTCSCTTSE--ECHHHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCCC-GGGTTCTTCCEEECT
T ss_pred HHHHHHHhcCcccccc--cccccccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCCc-hhhcCCCCCCEEECC
Confidence 3455666766666533 335678899999999999873 3 3588999999999999998874 578899999999999
Q ss_pred cccCCCCCCccccCCCCCcEEEcccCcCcccCChhhhcCCCCCcEEeCCCCcCCccCCccCcCCCCCCEEecccCcCccc
Q 040495 226 FNHFSGMIPPPIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGR 305 (443)
Q Consensus 226 ~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~ 305 (443)
+|.+++..+..+..+++|++|++++|.++ .++...+..+++|++|++++|++++..+..+..+++|++|++++|++++.
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 172 (272)
T 3rfs_A 94 GNQLQSLPNGVFDKLTNLKELVLVENQLQ-SLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSL 172 (272)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred CCccCccChhHhcCCcCCCEEECCCCcCC-ccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCcc
Confidence 99999877778899999999999999998 55555444899999999999999977777789999999999999999988
Q ss_pred cchhhhCCCCCCEEEccCCCCcccCCCchhhHhhhcCCCCCCEEEccCCcCcccCChhHhhhccCCCEEeccCCcCeecC
Q 040495 306 VSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNRISGTI 385 (443)
Q Consensus 306 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~ 385 (443)
.+..+..+++|+.|++++|.+++..+ ..+..+++|++|++++|++.+. ++.++.++++.|.++|.+
T Consensus 173 ~~~~~~~l~~L~~L~L~~N~l~~~~~------~~~~~l~~L~~L~l~~N~~~~~--------~~~l~~l~~~~n~~~g~i 238 (272)
T 3rfs_A 173 PEGVFDKLTQLKDLRLYQNQLKSVPD------GVFDRLTSLQYIWLHDNPWDCT--------CPGIRYLSEWINKHSGVV 238 (272)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCT------TTTTTCTTCCEEECCSSCBCCC--------TTTTHHHHHHHHHTGGGB
T ss_pred CHHHhcCCccCCEEECCCCcCCccCH------HHHhCCcCCCEEEccCCCcccc--------CcHHHHHHHHHHhCCCcc
Confidence 88888999999999999999998877 5678899999999999988754 246788888889999999
Q ss_pred chhhhcCCC
Q 040495 386 PPGIRSHAN 394 (443)
Q Consensus 386 p~~l~~~~~ 394 (443)
|.+++.+..
T Consensus 239 p~~~~~~~~ 247 (272)
T 3rfs_A 239 RNSAGSVAP 247 (272)
T ss_dssp BCTTSCBCG
T ss_pred cCcccccCC
Confidence 888776554
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.6e-25 Score=213.89 Aligned_cols=258 Identities=13% Similarity=0.168 Sum_probs=171.0
Q ss_pred eeeccCCcccccCCccccCCcCccEeeeeccccCccCC----ccccCCC-CCCEEEccCCcCCccc-ccccCC-----CC
Q 040495 150 ELSVDTNYLVGEIPSAIGSLFKLERLFIFHNHITGQLP----ASIGNLS-SLLAFDVRENILWGRI-DSLVQL-----RN 218 (443)
Q Consensus 150 ~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~----~~l~~l~-~L~~L~l~~n~l~~~~-~~l~~l-----~~ 218 (443)
+++++.|.+++.+|..+...++|++|++++|.+++..+ ..+..++ +|++|++++|.+.... ..+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 46788888888888777777779999999999886665 5677777 8888888888887654 444443 78
Q ss_pred CCEEEcccccCCCCCCcccc----CC-CCCcEEEcccCcCcccCChhhh---cC-CCCCcEEeCCCCcCCccC----Ccc
Q 040495 219 LRLLDIAFNHFSGMIPPPIF----NI-SSLEVISLSENRFTGSLPVDAG---VN-LPNLRQLSPNGNNFTGSI----PVS 285 (443)
Q Consensus 219 L~~L~l~~n~~~~~~~~~l~----~l-~~L~~L~l~~n~l~~~~~~~~~---~~-~~~L~~L~L~~n~l~~~~----~~~ 285 (443)
|++|++++|.+++..+..+. .. ++|++|++++|.+++..+..+. .. ..+|++|++++|.+++.. +..
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 88888888888766555333 33 7888888888888744433322 12 357888888888777433 333
Q ss_pred CcCCC-CCCEEecccCcCccccchhh----hCC-CCCCEEEccCCCCcccCCCchhhHhhhcC-CCCCCEEEccCCcCcc
Q 040495 286 LSNAS-RLEMIEFSRNQFSGRVSVDF----SRL-KNLSFLNMGINNLGTRTANELDFINLLAN-CSKLERLYFNRNRFQG 358 (443)
Q Consensus 286 l~~~~-~L~~L~l~~n~l~~~~~~~~----~~l-~~L~~L~l~~n~l~~~~~~~~~~~~~~~~-~~~L~~L~l~~n~l~~ 358 (443)
+...+ +|++|++++|++++..+..+ ..+ ++|+.|++++|.+++..... +...+.. .++|++|++++|++++
T Consensus 162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~--l~~~l~~~~~~L~~L~Ls~N~l~~ 239 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAE--LAYIFSSIPNHVVSLNLCLNCLHG 239 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHH--HHHHHHHSCTTCCEEECCSSCCCC
T ss_pred HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHH--HHHHHhcCCCCceEEECcCCCCCc
Confidence 34444 78888888888776665433 344 47888888888777643311 1233444 3578888888887775
Q ss_pred cCChhHhh---hccCCCEEeccCCcCeec-------CchhhhcCCCCCeEeCcCCcCcccC
Q 040495 359 VLPQSMAN---FSSTIKQIAMGRNRISGT-------IPPGIRSHANLNWLTMDSNLFTGTI 409 (443)
Q Consensus 359 ~~p~~~~~---~~~~L~~L~L~~n~l~~~-------~p~~l~~~~~L~~L~L~~n~~~~~~ 409 (443)
..+..+.. ..++|+.|++++|.+.+. ++..+..+++|+.|++++|.+.+..
T Consensus 240 ~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~ 300 (362)
T 3goz_A 240 PSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSH 300 (362)
T ss_dssp CCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGG
T ss_pred HHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcc
Confidence 54433222 236677788877774432 2234456667777777777776553
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.91 E-value=8.2e-23 Score=186.91 Aligned_cols=202 Identities=21% Similarity=0.251 Sum_probs=92.2
Q ss_pred CCEEeCCCCcCCCCCchhhcCCCccCeEEccCCCCCCCCChhhhcCCCCceeeccCCcccccCCccccCCcCccEeeeec
Q 040495 100 LRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSVDTNYLVGEIPSAIGSLFKLERLFIFH 179 (443)
Q Consensus 100 L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~ 179 (443)
.++++++++.++ .+|..+. +++++|++++|.+++..+..|.++++|++|++++|.++...+..+..+++|++|++++
T Consensus 18 ~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~ 94 (270)
T 2o6q_A 18 KNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD 94 (270)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred CCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence 445555555554 3343222 3445555555555433333444444444444444444422222233344444444444
Q ss_pred cccCccCCccccCCCCCCEEEccCCcCCcccccccCCCCCCEEEcccccCCCCCCccccCCCCCcEEEcccCcCcccCCh
Q 040495 180 NHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLRLLDIAFNHFSGMIPPPIFNISSLEVISLSENRFTGSLPV 259 (443)
Q Consensus 180 n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~ 259 (443)
|.+++..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.++ .+|.
T Consensus 95 n~l~~~~~-----------------------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~ 150 (270)
T 2o6q_A 95 NKLQALPI-----------------------GVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ-SLPK 150 (270)
T ss_dssp SCCCCCCT-----------------------TTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCT
T ss_pred CcCCcCCH-----------------------hHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCC-ccCH
Confidence 44332222 22334444555555555554444444455555555555555554 3333
Q ss_pred hhhcCCCCCcEEeCCCCcCCccCCccCcCCCCCCEEecccCcCccccchhhhCCCCCCEEEccCCCCcc
Q 040495 260 DAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLGT 328 (443)
Q Consensus 260 ~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 328 (443)
..+..+++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|+.|++++|.+..
T Consensus 151 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 219 (270)
T 2o6q_A 151 GVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDC 219 (270)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred hHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeC
Confidence 333344555555555555554333444455555555555555554433344444555555555544433
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
Probab=99.91 E-value=3e-25 Score=214.00 Aligned_cols=249 Identities=18% Similarity=0.250 Sum_probs=131.8
Q ss_pred cCCccccCCcCccEeeeeccccCccCCc----cccCCCCCCEEEccCCcCCcccccccCCCCCCEEEcccccCCCCCCcc
Q 040495 161 EIPSAIGSLFKLERLFIFHNHITGQLPA----SIGNLSSLLAFDVRENILWGRIDSLVQLRNLRLLDIAFNHFSGMIPPP 236 (443)
Q Consensus 161 ~~p~~l~~l~~L~~L~l~~n~l~~~~~~----~l~~l~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~ 236 (443)
.++..+..+++|++|++++|.+++..+. .+..+++|++|++++|.+. .+.+.+|..
T Consensus 23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~--------------------~l~~~~~~~ 82 (386)
T 2ca6_A 23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTG--------------------RVKDEIPEA 82 (386)
T ss_dssp TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTT--------------------SCGGGSHHH
T ss_pred HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccC--------------------ccccchhHH
Confidence 3455555666666666666666544322 2445555555555554322 111222222
Q ss_pred c-------cCCCCCcEEEcccCcCcc----cCChhhhcCCCCCcEEeCCCCcCCccCCcc----CcCC---------CCC
Q 040495 237 I-------FNISSLEVISLSENRFTG----SLPVDAGVNLPNLRQLSPNGNNFTGSIPVS----LSNA---------SRL 292 (443)
Q Consensus 237 l-------~~l~~L~~L~l~~n~l~~----~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~----l~~~---------~~L 292 (443)
+ ..+++|++|++++|.+++ .+|..+. .+++|++|++++|.+++..+.. +..+ ++|
T Consensus 83 ~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~-~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L 161 (386)
T 2ca6_A 83 LRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLS-KHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPL 161 (386)
T ss_dssp HHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHH-HCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCC
T ss_pred HHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHH-hCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCC
Confidence 2 344555555555555543 1333333 4555555555555554322222 2222 566
Q ss_pred CEEecccCcCc-cccc---hhhhCCCCCCEEEccCCCCcccCCCchhhHh-hhcCCCCCCEEEccCCcCc----ccCChh
Q 040495 293 EMIEFSRNQFS-GRVS---VDFSRLKNLSFLNMGINNLGTRTANELDFIN-LLANCSKLERLYFNRNRFQ----GVLPQS 363 (443)
Q Consensus 293 ~~L~l~~n~l~-~~~~---~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~-~~~~~~~L~~L~l~~n~l~----~~~p~~ 363 (443)
++|++++|+++ +..+ ..+..+++|+.|++++|.++..... .... .+..+++|++|++++|.++ +.+|..
T Consensus 162 ~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~--~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~ 239 (386)
T 2ca6_A 162 RSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIE--HLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIA 239 (386)
T ss_dssp CEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHH--HHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHH
T ss_pred cEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHH--HHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHH
Confidence 66666666665 2222 2345566666666666665522100 0011 4556666666666666664 345555
Q ss_pred HhhhccCCCEEeccCCcCeec----Cchhhhc--CCCCCeEeCcCCcCcc----cCchhh-cCCCCCCEEEccCCcCccc
Q 040495 364 MANFSSTIKQIAMGRNRISGT----IPPGIRS--HANLNWLTMDSNLFTG----TIPPVI-GELKNLQLLDLGGNFLQGS 432 (443)
Q Consensus 364 ~~~~~~~L~~L~L~~n~l~~~----~p~~l~~--~~~L~~L~L~~n~~~~----~~p~~~-~~l~~L~~L~l~~n~l~~~ 432 (443)
+... ++|+.|+|++|++++. ++..+.. +++|++|+|++|.+++ .+|..+ .++++|++|++++|++++.
T Consensus 240 l~~~-~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~ 318 (386)
T 2ca6_A 240 LKSW-PNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEE 318 (386)
T ss_dssp GGGC-TTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTT
T ss_pred HccC-CCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcc
Confidence 5443 5677777777766654 4455533 6667777777777765 366655 4467777777777777655
Q ss_pred C
Q 040495 433 I 433 (443)
Q Consensus 433 ~ 433 (443)
.
T Consensus 319 ~ 319 (386)
T 2ca6_A 319 D 319 (386)
T ss_dssp S
T ss_pred h
Confidence 4
|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.4e-24 Score=201.18 Aligned_cols=207 Identities=18% Similarity=0.214 Sum_probs=165.2
Q ss_pred CCCCCEEEcccccCCCCCCccc--cCCCCCcEEEcccCcCcccCC----hhhhcCCCCCcEEeCCCCcCCccCCccCcCC
Q 040495 216 LRNLRLLDIAFNHFSGMIPPPI--FNISSLEVISLSENRFTGSLP----VDAGVNLPNLRQLSPNGNNFTGSIPVSLSNA 289 (443)
Q Consensus 216 l~~L~~L~l~~n~~~~~~~~~l--~~l~~L~~L~l~~n~l~~~~~----~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 289 (443)
.++|++|++++|.+.+..|..+ ..+++|++|++++|.+++..+ ..+. .+++|++|++++|++++..+..+..+
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~-~~~~L~~L~Ls~n~l~~~~~~~~~~l 168 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW-LKPGLKVLSIAQAHSPAFSCEQVRAF 168 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT-BCSCCCEEEEECCSSCCCCTTSCCCC
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh-hccCCCEEEeeCCCcchhhHHHhccC
Confidence 4668888888888888888777 788889999999998886555 2223 68899999999999987778888999
Q ss_pred CCCCEEecccCcCccc--c--chhhhCCCCCCEEEccCCCCcccCCCchhhHhhhcCCCCCCEEEccCCcCcccCChhHh
Q 040495 290 SRLEMIEFSRNQFSGR--V--SVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQSMA 365 (443)
Q Consensus 290 ~~L~~L~l~~n~l~~~--~--~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~ 365 (443)
++|++|++++|++.+. . +..+..+++|++|++++|.++..... ....+..+++|++|++++|++++.+|..+.
T Consensus 169 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~---~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~ 245 (310)
T 4glp_A 169 PALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGV---CAALAAAGVQPHSLDLSHNSLRATVNPSAP 245 (310)
T ss_dssp TTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHH---HHHHHHHTCCCSSEECTTSCCCCCCCSCCS
T ss_pred CCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHH---HHHHHhcCCCCCEEECCCCCCCccchhhHH
Confidence 9999999999988753 2 12246889999999999988643220 001357889999999999999987787766
Q ss_pred hhc--cCCCEEeccCCcCeecCchhhhcCCCCCeEeCcCCcCcccCchhhcCCCCCCEEEccCCcCcc
Q 040495 366 NFS--STIKQIAMGRNRISGTIPPGIRSHANLNWLTMDSNLFTGTIPPVIGELKNLQLLDLGGNFLQG 431 (443)
Q Consensus 366 ~~~--~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~ 431 (443)
.+. ++|+.|++++|+++ .+|..+. ++|++|+|++|++++ +|. +..+++|++|++++|+++.
T Consensus 246 ~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~-~~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 246 RCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNR-APQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp SCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCS-CCC-TTSCCCCSCEECSSTTTSC
T ss_pred hccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCC-Cch-hhhCCCccEEECcCCCCCC
Confidence 642 68999999999999 7787764 799999999999994 454 6778999999999999874
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=99.91 E-value=6.1e-25 Score=207.72 Aligned_cols=254 Identities=17% Similarity=0.212 Sum_probs=135.2
Q ss_pred CceeeccCCcccccCCccccCC--cCccEeeeeccccCccCCccccCCCCCCEEEccCCcCCcccccccCCCCCCEEEcc
Q 040495 148 LIELSVDTNYLVGEIPSAIGSL--FKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLRLLDIA 225 (443)
Q Consensus 148 L~~L~l~~n~l~~~~p~~l~~l--~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~ 225 (443)
++.++++++.+. +..+..+ ++++.+++++|.+++..+. +..+++ |++|+++
T Consensus 49 ~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~-----------------------L~~L~L~ 101 (336)
T 2ast_B 49 WQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFR-----------------------VQHMDLS 101 (336)
T ss_dssp SSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBC-----------------------CCEEECT
T ss_pred heeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCC-----------------------CCEEEcc
Confidence 556666665544 2333333 5566666666655544332 334444 4445554
Q ss_pred cccCCCC-CCccccCCCCCcEEEcccCcCcccCChhhhcCCCCCcEEeCCCC-cCCcc-CCccCcCCCCCCEEecccC-c
Q 040495 226 FNHFSGM-IPPPIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGN-NFTGS-IPVSLSNASRLEMIEFSRN-Q 301 (443)
Q Consensus 226 ~n~~~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n-~l~~~-~~~~l~~~~~L~~L~l~~n-~ 301 (443)
+|.+.+. ++..+..+++|++|++++|.+++..+..+. .+++|++|++++| .+++. ++..+..+++|++|++++| .
T Consensus 102 ~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~-~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~ 180 (336)
T 2ast_B 102 NSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLA-KNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFD 180 (336)
T ss_dssp TCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHT-TCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTT
T ss_pred CCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHh-cCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCC
Confidence 4444432 334444555555555555555544444443 4555666666655 44432 4444555666666666666 5
Q ss_pred Cccc-cchhhhCCC-CCCEEEccCC--CCcccCCCchhhHhhhcCCCCCCEEEccCCc-CcccCChhHhhhccCCCEEec
Q 040495 302 FSGR-VSVDFSRLK-NLSFLNMGIN--NLGTRTANELDFINLLANCSKLERLYFNRNR-FQGVLPQSMANFSSTIKQIAM 376 (443)
Q Consensus 302 l~~~-~~~~~~~l~-~L~~L~l~~n--~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~p~~~~~~~~~L~~L~L 376 (443)
+++. ++..+..++ +|++|++++| .+++. .++..+..+++|++|++++|. +++..+..+..+ ++|+.|++
T Consensus 181 l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~-----~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l-~~L~~L~l 254 (336)
T 2ast_B 181 FTEKHVQVAVAHVSETITQLNLSGYRKNLQKS-----DLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQL-NYLQHLSL 254 (336)
T ss_dssp CCHHHHHHHHHHSCTTCCEEECCSCGGGSCHH-----HHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGC-TTCCEEEC
T ss_pred cChHHHHHHHHhcccCCCEEEeCCCcccCCHH-----HHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCC-CCCCEeeC
Confidence 5543 344455666 6666666666 33311 111345566667777777666 555555555553 66777777
Q ss_pred cCCc-CeecCchhhhcCCCCCeEeCcCCcCcccCchhhcCCCCCCEEEccCCcCcccCCcccc
Q 040495 377 GRNR-ISGTIPPGIRSHANLNWLTMDSNLFTGTIPPVIGELKNLQLLDLGGNFLQGSIPSSLG 438 (443)
Q Consensus 377 ~~n~-l~~~~p~~l~~~~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~ 438 (443)
++|. ++......+..+++|++|++++| ++...-..+. ..++.|++++|++++..|..++
T Consensus 255 ~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~~~~~l~--~~l~~L~l~~n~l~~~~~~~~~ 314 (336)
T 2ast_B 255 SRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLK--EALPHLQINCSHFTTIARPTIG 314 (336)
T ss_dssp TTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHH--HHSTTSEESCCCSCCTTCSSCS
T ss_pred CCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHHHHHHHH--hhCcceEEecccCccccCCccc
Confidence 7663 33222234666777777777776 4322222221 2355555677777777776554
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=99.91 E-value=1.1e-25 Score=212.77 Aligned_cols=268 Identities=16% Similarity=0.150 Sum_probs=174.3
Q ss_pred CCCccceeeCCCCCcEEEEEcCCCCCcccccccccCC--CCCCEEeCCCCcCCCCCchhhcCCCccCeEEccCCCCCCC-
Q 040495 61 LCQWTGVTCGRRHQRVTRLDLRNQSIGGPLSPYVGNL--SFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGT- 137 (443)
Q Consensus 61 ~c~w~gv~c~~~~~~v~~L~l~~~~~~~~~~~~~~~l--~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~- 137 (443)
|..|.++.++. ..++.++++++.+. +..+..+ ++++.|++++|.+.+..+. +.++++|++|++++|.+++.
T Consensus 36 c~~W~~~~~~~--~~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~ 109 (336)
T 2ast_B 36 CKRWYRLASDE--SLWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVST 109 (336)
T ss_dssp CHHHHHHHTCS--TTSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHH
T ss_pred HHHHHHHhcCc--hhheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHH
Confidence 44688888764 35778899888775 3445666 7889999998888866554 56788888888888887755
Q ss_pred CChhhhcCCCCceeeccCCcccccCCccccCCcCccEeeeecc-ccCcc-CCccccCCCCCCEEEccCC-cCCccccccc
Q 040495 138 IPTNLSRRSNLIELSVDTNYLVGEIPSAIGSLFKLERLFIFHN-HITGQ-LPASIGNLSSLLAFDVREN-ILWGRIDSLV 214 (443)
Q Consensus 138 ~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n-~l~~~-~~~~l~~l~~L~~L~l~~n-~l~~~~~~l~ 214 (443)
+|..+..+++|++|++++|.+++..+..++.+++|++|++++| .+++. ++..+..+++|++|++++| .+++..
T Consensus 110 ~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~---- 185 (336)
T 2ast_B 110 LHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKH---- 185 (336)
T ss_dssp HHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHH----
T ss_pred HHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHH----
Confidence 6777777888888888888777666777777777777777777 45532 3444555555666655555 444321
Q ss_pred CCCCCCEEEcccccCCCCCCccccCCC-CCcEEEcccC--cCc-ccCChhhhcCCCCCcEEeCCCCc-CCccCCccCcCC
Q 040495 215 QLRNLRLLDIAFNHFSGMIPPPIFNIS-SLEVISLSEN--RFT-GSLPVDAGVNLPNLRQLSPNGNN-FTGSIPVSLSNA 289 (443)
Q Consensus 215 ~l~~L~~L~l~~n~~~~~~~~~l~~l~-~L~~L~l~~n--~l~-~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~~ 289 (443)
++..+..++ +|++|++++| .++ +.++..+. .+++|++|++++|. +++..+..+..+
T Consensus 186 ------------------~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~-~~~~L~~L~l~~~~~l~~~~~~~l~~l 246 (336)
T 2ast_B 186 ------------------VQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVR-RCPNLVHLDLSDSVMLKNDCFQEFFQL 246 (336)
T ss_dssp ------------------HHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHH-HCTTCSEEECTTCTTCCGGGGGGGGGC
T ss_pred ------------------HHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHh-hCCCCCEEeCCCCCcCCHHHHHHHhCC
Confidence 223334444 5555555555 333 23444333 57777777777777 565666677777
Q ss_pred CCCCEEecccCc-CccccchhhhCCCCCCEEEccCCCCcccCCCchhhHhhhcCCCCCCEEEccCCcCcccCChhHhh
Q 040495 290 SRLEMIEFSRNQ-FSGRVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQSMAN 366 (443)
Q Consensus 290 ~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~ 366 (443)
++|++|++++|. +.......+..+++|+.|++++| ++.... ..+. .+++.|++++|++++..|..+..
T Consensus 247 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~~~------~~l~--~~l~~L~l~~n~l~~~~~~~~~~ 315 (336)
T 2ast_B 247 NYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTL------QLLK--EALPHLQINCSHFTTIARPTIGN 315 (336)
T ss_dssp TTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCH------HHHH--HHSTTSEESCCCSCCTTCSSCSS
T ss_pred CCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHHHH------HHHH--hhCcceEEecccCccccCCcccc
Confidence 888888888774 33332335677888888888877 332211 1121 23556668888888877776543
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
Probab=99.91 E-value=8e-23 Score=188.70 Aligned_cols=201 Identities=25% Similarity=0.256 Sum_probs=104.2
Q ss_pred ccCCCCCCEEeCCCCcCCCCCchhhcCCCccCeEEccCCCCCCCCChhhhcCCCCceeeccCCcccccCCccccCCcCcc
Q 040495 94 VGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSVDTNYLVGEIPSAIGSLFKLE 173 (443)
Q Consensus 94 ~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~ 173 (443)
+.+++++++++++++.++ .+|..+. +++++|++++|.+++..|..+..+++|++|++++|.+++. +.. +.+++|+
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~-~~l~~L~ 80 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-QVD-GTLPVLG 80 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-ECC-SCCTTCC
T ss_pred ccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcc-cCC-CCCCcCC
Confidence 455666677777666665 4454433 4666677777766655566666666677777766666532 222 5566666
Q ss_pred EeeeeccccCccCCccccCCCCCCEEEccCCcCCccc-ccccCCCCCCEEEcccccCCCCCCccccCCCCCcEEEcccCc
Q 040495 174 RLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRI-DSLVQLRNLRLLDIAFNHFSGMIPPPIFNISSLEVISLSENR 252 (443)
Q Consensus 174 ~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~ 252 (443)
+|++++|.++ .+|..+..+++|++|++++|.+++.. ..+..+++|++|++++|++.+..+..+..+++|++|++++|.
T Consensus 81 ~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 159 (290)
T 1p9a_G 81 TLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN 159 (290)
T ss_dssp EEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred EEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCc
Confidence 6666666665 44554555555555555555444433 334444444445554444443333334444444444444444
Q ss_pred CcccCChhhhcCCCCCcEEeCCCCcCCccCCccCcCCCCCCEEecccCcC
Q 040495 253 FTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQF 302 (443)
Q Consensus 253 l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l 302 (443)
++ .+|...+..+++|++|++++|+++ .+|..+...++|+.+++++|.+
T Consensus 160 l~-~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 160 LT-ELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp CS-CCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCB
T ss_pred CC-ccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCc
Confidence 44 333333333444444444444444 3333333334444444444443
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
Probab=99.90 E-value=1.5e-25 Score=216.01 Aligned_cols=119 Identities=16% Similarity=0.197 Sum_probs=57.5
Q ss_pred CCCCcEEeCCCCcCCc-----cCCccCcCCCCCCEEecccCcCc----cccchhhhCCCCCCEEEccCCCCcccCCCchh
Q 040495 265 LPNLRQLSPNGNNFTG-----SIPVSLSNASRLEMIEFSRNQFS----GRVSVDFSRLKNLSFLNMGINNLGTRTANELD 335 (443)
Q Consensus 265 ~~~L~~L~L~~n~l~~-----~~~~~l~~~~~L~~L~l~~n~l~----~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 335 (443)
+++|++|++++|+++. ..+..+..+++|++|++++|.++ +.++..+..+++|+.|++++|.+++.... .
T Consensus 186 ~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~--~ 263 (386)
T 2ca6_A 186 HRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAA--A 263 (386)
T ss_dssp CTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHH--H
T ss_pred CCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHH--H
Confidence 4445555555554441 12224445555555555555554 33444455555555555555555443211 0
Q ss_pred hHhhh--cCCCCCCEEEccCCcCcc----cCChhHhhhccCCCEEeccCCcCeecC
Q 040495 336 FINLL--ANCSKLERLYFNRNRFQG----VLPQSMANFSSTIKQIAMGRNRISGTI 385 (443)
Q Consensus 336 ~~~~~--~~~~~L~~L~l~~n~l~~----~~p~~~~~~~~~L~~L~L~~n~l~~~~ 385 (443)
++..+ ..+++|++|++++|.+++ .+|..+...+++|+.|++++|++++..
T Consensus 264 l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 264 VVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp HHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred HHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 11233 225556666666666554 245444222355666666666665544
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
Probab=99.90 E-value=1.4e-22 Score=187.13 Aligned_cols=203 Identities=19% Similarity=0.222 Sum_probs=122.7
Q ss_pred hcCCCccCeEEccCCCCCCCCChhhhcCCCCceeeccCCcccccCCccccCCcCccEeeeeccccCccCCccccCCCCCC
Q 040495 118 IGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSVDTNYLVGEIPSAIGSLFKLERLFIFHNHITGQLPASIGNLSSLL 197 (443)
Q Consensus 118 l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 197 (443)
+++++++++++++++.++ .+|..+. +++++|++++|.+++..+..+..+++|++|++++|.+++. +.. ..+++|+
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~-~~l~~L~ 80 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-QVD-GTLPVLG 80 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-ECC-SCCTTCC
T ss_pred ccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcc-cCC-CCCCcCC
Confidence 566777888888888877 5565543 5778888888887766667777777788888877777643 222 5566666
Q ss_pred EEEccCCcCCcccccccCCCCCCEEEcccccCCCCCCccccCCCCCcEEEcccCcCcccCChhhhcCCCCCcEEeCCCCc
Q 040495 198 AFDVRENILWGRIDSLVQLRNLRLLDIAFNHFSGMIPPPIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNN 277 (443)
Q Consensus 198 ~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~ 277 (443)
+|++++|.+...+..+..+++|++|++++|++++..+..+..+++|++|++++|.++ .+|...+..+++|+.|++++|+
T Consensus 81 ~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~ 159 (290)
T 1p9a_G 81 TLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNN 159 (290)
T ss_dssp EEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECTTSC
T ss_pred EEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCC-ccChhhcccccCCCEEECCCCc
Confidence 666666666554455555666666666666665544455555666666666666555 3444443345555555555555
Q ss_pred CCccCCccCcCCCCCCEEecccCcCccccchhhhCCCCCCEEEccCCCCc
Q 040495 278 FTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLG 327 (443)
Q Consensus 278 l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 327 (443)
+++..+..+..+++|+.|++++|+++ .+|..+...++|+.+++++|.+.
T Consensus 160 l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 160 LTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred CCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence 55333334455555555555555555 33444444445555555555444
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
Probab=99.90 E-value=8.3e-23 Score=184.76 Aligned_cols=191 Identities=19% Similarity=0.231 Sum_probs=148.5
Q ss_pred CCCCccceeeCCCCCcEEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCCCCCchhhcCCCccCeEEccCCCCCCCCC
Q 040495 60 SLCQWTGVTCGRRHQRVTRLDLRNQSIGGPLSPYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIP 139 (443)
Q Consensus 60 ~~c~w~gv~c~~~~~~v~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p 139 (443)
+||.|.|..|.. ..+.++++++.+.. +|..+. +++++|++++|.+++..+..+.++++|++|++++|.+++..|
T Consensus 3 ~Cp~~~gC~C~~---~~~~l~~~~~~l~~-~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 76 (251)
T 3m19_A 3 TCETVTGCTCNE---GKKEVDCQGKSLDS-VPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSA 76 (251)
T ss_dssp -CHHHHSSEEEG---GGTEEECTTCCCSS-CCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCT
T ss_pred cCCCCCceEcCC---CCeEEecCCCCccc-cCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCH
Confidence 577899999963 34578999998874 454443 689999999999998888889999999999999999998888
Q ss_pred hhhhcCCCCceeeccCCcccccCCccccCCcCccEeeeeccccCccCCccccCCCCCCEEEccCCcCCccc-ccccCCCC
Q 040495 140 TNLSRRSNLIELSVDTNYLVGEIPSAIGSLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRI-DSLVQLRN 218 (443)
Q Consensus 140 ~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~-~~l~~l~~ 218 (443)
..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+.. ..+..+++
T Consensus 77 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 156 (251)
T 3m19_A 77 GVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTN 156 (251)
T ss_dssp TTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred hHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcC
Confidence 88899999999999999998666677888899999999999888665555677777777777777776655 35666677
Q ss_pred CCEEEcccccCCCCCCccccCCCCCcEEEcccCcCccc
Q 040495 219 LRLLDIAFNHFSGMIPPPIFNISSLEVISLSENRFTGS 256 (443)
Q Consensus 219 L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~ 256 (443)
|++|++++|.+.+..+..+..+++|++|++++|.+.+.
T Consensus 157 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 157 LQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred CCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 77777777777655555666666666666666666543
|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=2.6e-23 Score=194.20 Aligned_cols=225 Identities=14% Similarity=0.124 Sum_probs=169.3
Q ss_pred CCCCEEeCCCCcCCCCCch---hhcCCCccCeEEccCCCCCCCCChhh--hcCCCCceeeccCCcccccCC----ccccC
Q 040495 98 SFLRYINLANNGFLGEIPP---QIGRLNMLEGLVLSNNSFSGTIPTNL--SRRSNLIELSVDTNYLVGEIP----SAIGS 168 (443)
Q Consensus 98 ~~L~~L~L~~n~~~~~~~~---~l~~l~~L~~L~l~~n~~~~~~p~~l--~~l~~L~~L~l~~n~l~~~~p----~~l~~ 168 (443)
..++.+.+.++.++..... .+..+++|++|++++|.+++..|..+ ..+++|++|++++|.+++..+ ..+..
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 3467777777766532111 12234668888888888888888877 788888888888888876544 33456
Q ss_pred CcCccEeeeeccccCccCCccccCCCCCCEEEccCCcCCcc---c--ccccCCCCCCEEEcccccCCCCCCc----cccC
Q 040495 169 LFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGR---I--DSLVQLRNLRLLDIAFNHFSGMIPP----PIFN 239 (443)
Q Consensus 169 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~---~--~~l~~l~~L~~L~l~~n~~~~~~~~----~l~~ 239 (443)
+++|++|++++|.+++..+..+..+++|++|++++|.+.+. . ..+..+++|++|++++|.++. ++. .+..
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~ 222 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAA 222 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHH
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhc
Confidence 78889999999888877777888888999999988887652 1 223678889999999988862 222 2457
Q ss_pred CCCCcEEEcccCcCcccCChhhhcCC---CCCcEEeCCCCcCCccCCccCcCCCCCCEEecccCcCccccchhhhCCCCC
Q 040495 240 ISSLEVISLSENRFTGSLPVDAGVNL---PNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNL 316 (443)
Q Consensus 240 l~~L~~L~l~~n~l~~~~~~~~~~~~---~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L 316 (443)
+++|++|++++|.+++..|..+. .+ ++|++|++++|+++ .+|..+. ++|++|++++|++++. |. +..+++|
T Consensus 223 l~~L~~L~Ls~N~l~~~~p~~~~-~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L 296 (310)
T 4glp_A 223 GVQPHSLDLSHNSLRATVNPSAP-RCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEV 296 (310)
T ss_dssp TCCCSSEECTTSCCCCCCCSCCS-SCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCC
T ss_pred CCCCCEEECCCCCCCccchhhHH-hccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCc
Confidence 78899999999998876676555 34 68999999999998 6677664 7899999999999864 33 6788999
Q ss_pred CEEEccCCCCccc
Q 040495 317 SFLNMGINNLGTR 329 (443)
Q Consensus 317 ~~L~l~~n~l~~~ 329 (443)
+.|++++|.+++.
T Consensus 297 ~~L~L~~N~l~~~ 309 (310)
T 4glp_A 297 DNLTLDGNPFLVP 309 (310)
T ss_dssp SCEECSSTTTSCC
T ss_pred cEEECcCCCCCCC
Confidence 9999999988753
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
Probab=99.88 E-value=7.8e-22 Score=178.37 Aligned_cols=180 Identities=17% Similarity=0.226 Sum_probs=119.4
Q ss_pred CCCEEEcccccCCCCCCccccCCCCCcEEEcccCcCcccCChhhhcCCCCCcEEeCCCCcCCccCCccCcCCCCCCEEec
Q 040495 218 NLRLLDIAFNHFSGMIPPPIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEF 297 (443)
Q Consensus 218 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l 297 (443)
..++++++++.+. .+|..+. +++++|++++|.+++..+..+. .+++|++|++++|.+++..+..+..+++|++|++
T Consensus 15 ~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 15 GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFR-GLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTT-TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhc-CcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence 4566777777766 4454443 4677777777777643333333 6777777777777777666666777777777777
Q ss_pred ccCcCccccchhhhCCCCCCEEEccCCCCcccCCCchhhHhhhcCCCCCCEEEccCCcCcccCChhHhhhccCCCEEecc
Q 040495 298 SRNQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMG 377 (443)
Q Consensus 298 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~L~ 377 (443)
++|++++..+..+..+++|++|++++|.+++..+ ..+..+++|++|++++|++++..+..+.. .++|+.|+++
T Consensus 91 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-l~~L~~L~L~ 163 (251)
T 3m19_A 91 ANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPS------GVFDRLTKLKELRLNTNQLQSIPAGAFDK-LTNLQTLSLS 163 (251)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT------TTTTTCTTCCEEECCSSCCCCCCTTTTTT-CTTCCEEECC
T ss_pred CCCcccccChhHhcccCCCCEEEcCCCcCCCcCh------hHhccCCcccEEECcCCcCCccCHHHcCc-CcCCCEEECC
Confidence 7777776666666777777777777777776555 44566777777777777777433334444 3667777777
Q ss_pred CCcCeecCchhhhcCCCCCeEeCcCCcCccc
Q 040495 378 RNRISGTIPPGIRSHANLNWLTMDSNLFTGT 408 (443)
Q Consensus 378 ~n~l~~~~p~~l~~~~~L~~L~L~~n~~~~~ 408 (443)
+|++++..+..+..+++|++|++++|++.+.
T Consensus 164 ~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 164 TNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp SSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred CCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 7777755555666677777777777777654
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
Probab=99.88 E-value=2e-22 Score=180.90 Aligned_cols=197 Identities=14% Similarity=0.174 Sum_probs=140.4
Q ss_pred CCCEEEcccccCCCCCCccccCCCCCcEEEcccCc-CcccCChhhhcCCCCCcEEeCCC-CcCCccCCccCcCCCCCCEE
Q 040495 218 NLRLLDIAFNHFSGMIPPPIFNISSLEVISLSENR-FTGSLPVDAGVNLPNLRQLSPNG-NNFTGSIPVSLSNASRLEMI 295 (443)
Q Consensus 218 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~~L~~L~L~~-n~l~~~~~~~l~~~~~L~~L 295 (443)
++++|++++|.+++..+..+..+++|++|++++|. ++ .++...+..+++|++|++++ |++++..+..+..+++|++|
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~-~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQ-QLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCC-EECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcc-eeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 55666666666655444456666666666666665 54 45544444667777777776 67765555667777777777
Q ss_pred ecccCcCccccchhhhCCCCCC---EEEccCC-CCcccCCCchhhHhhhcCCCCCC-EEEccCCcCcccCChhHhhhccC
Q 040495 296 EFSRNQFSGRVSVDFSRLKNLS---FLNMGIN-NLGTRTANELDFINLLANCSKLE-RLYFNRNRFQGVLPQSMANFSST 370 (443)
Q Consensus 296 ~l~~n~l~~~~~~~~~~l~~L~---~L~l~~n-~l~~~~~~~~~~~~~~~~~~~L~-~L~l~~n~l~~~~p~~~~~~~~~ 370 (443)
++++|++++ +|. +..+++|+ +|++++| .+++..+ ..+.++++|+ +|++++|+++ .+|...+.. ++
T Consensus 111 ~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~------~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~-~~ 180 (239)
T 2xwt_C 111 GIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPV------NAFQGLCNETLTLKLYNNGFT-SVQGYAFNG-TK 180 (239)
T ss_dssp EEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECT------TTTTTTBSSEEEEECCSCCCC-EECTTTTTT-CE
T ss_pred eCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCc------ccccchhcceeEEEcCCCCCc-ccCHhhcCC-CC
Confidence 777777775 444 66777777 8888888 7777665 4577788888 8888888888 677665554 67
Q ss_pred CCEEeccCCc-CeecCchhhhcC-CCCCeEeCcCCcCcccCchhhcCCCCCCEEEccCCc
Q 040495 371 IKQIAMGRNR-ISGTIPPGIRSH-ANLNWLTMDSNLFTGTIPPVIGELKNLQLLDLGGNF 428 (443)
Q Consensus 371 L~~L~L~~n~-l~~~~p~~l~~~-~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~ 428 (443)
|+.|++++|+ +++..+..+..+ ++|+.|++++|+++ .+|.. .+++|+.|+++++.
T Consensus 181 L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~-~l~~~--~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 181 LDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSK--GLEHLKELIARNTW 237 (239)
T ss_dssp EEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCC-CCCCT--TCTTCSEEECTTC-
T ss_pred CCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccc-cCChh--HhccCceeeccCcc
Confidence 8899999985 886656677888 88999999999888 56654 57788899888763
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
Probab=99.88 E-value=5.1e-22 Score=178.22 Aligned_cols=199 Identities=17% Similarity=0.114 Sum_probs=123.3
Q ss_pred CCCEEeCCCCcCCCCCchhhcCCCccCeEEccCCC-CCCCCChhhhcCCCCceeeccC-CcccccCCccccCCcCccEee
Q 040495 99 FLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNS-FSGTIPTNLSRRSNLIELSVDT-NYLVGEIPSAIGSLFKLERLF 176 (443)
Q Consensus 99 ~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~-~~~~~p~~l~~l~~L~~L~l~~-n~l~~~~p~~l~~l~~L~~L~ 176 (443)
++++|++++|.+++..+..++++++|++|++++|. ++...+..|.++++|++|++++ |.+++..+..+..+++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 78888888888876666677788888888888886 6655555677777777777777 777755555667777777777
Q ss_pred eeccccCccCCccccCCCCCCEEEccCCcCCcccccccCCCCCCEEEcccc-cCCCCCCccccCCCCCc-EEEcccCcCc
Q 040495 177 IFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLRLLDIAFN-HFSGMIPPPIFNISSLE-VISLSENRFT 254 (443)
Q Consensus 177 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n-~~~~~~~~~l~~l~~L~-~L~l~~n~l~ 254 (443)
+++|.+++ +|. +..+++|+ .|++|++++| .+.+..+..+..+++|+ +|++++|.++
T Consensus 112 l~~n~l~~-lp~-~~~l~~L~--------------------~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~ 169 (239)
T 2xwt_C 112 IFNTGLKM-FPD-LTKVYSTD--------------------IFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT 169 (239)
T ss_dssp EEEECCCS-CCC-CTTCCBCC--------------------SEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC
T ss_pred CCCCCCcc-ccc-cccccccc--------------------cccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc
Confidence 77777764 443 44433333 1125555555 55444444455666666 6666666665
Q ss_pred ccCChhhhcCCCCCcEEeCCCCc-CCccCCccCcCC-CCCCEEecccCcCccccchhhhCCCCCCEEEccCC
Q 040495 255 GSLPVDAGVNLPNLRQLSPNGNN-FTGSIPVSLSNA-SRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGIN 324 (443)
Q Consensus 255 ~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~~-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 324 (443)
.+|...+. .++|++|++++|+ +++..+..+..+ ++|+.|++++|++++..+. .+++|+.|+++++
T Consensus 170 -~i~~~~~~-~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 170 -SVQGYAFN-GTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNT 236 (239)
T ss_dssp -EECTTTTT-TCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC
T ss_pred -ccCHhhcC-CCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccCc
Confidence 55555542 2566666666663 654444555666 6666666666666533222 4455555555543
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
Probab=99.87 E-value=1.8e-21 Score=181.30 Aligned_cols=209 Identities=20% Similarity=0.323 Sum_probs=151.6
Q ss_pred EeeeeccccCccCCccccCCCCCCEEEccCCcCCcccccccCCCCCCEEEcccccCCCCCCccccCCCCCcEEEcccCcC
Q 040495 174 RLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLRLLDIAFNHFSGMIPPPIFNISSLEVISLSENRF 253 (443)
Q Consensus 174 ~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l 253 (443)
.+.+..+.+++.. ....+++|++|++++|.+... +.+..+++|++|++++|.+.+.. . +..+++|++|++++|.+
T Consensus 23 ~~~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~l-~~~~~l~~L~~L~L~~n~i~~~~-~-~~~l~~L~~L~L~~n~l 97 (308)
T 1h6u_A 23 KIAAGKSNVTDTV--TQADLDGITTLSAFGTGVTTI-EGVQYLNNLIGLELKDNQITDLA-P-LKNLTKITELELSGNPL 97 (308)
T ss_dssp HHHTTCSSTTSEE--CHHHHHTCCEEECTTSCCCCC-TTGGGCTTCCEEECCSSCCCCCG-G-GTTCCSCCEEECCSCCC
T ss_pred HHHhCCCCcCcee--cHHHcCCcCEEEeeCCCccCc-hhhhccCCCCEEEccCCcCCCCh-h-HccCCCCCEEEccCCcC
Confidence 3344444444322 345677888888888877654 35777888888888888887543 3 78888888888888888
Q ss_pred cccCChhhhcCCCCCcEEeCCCCcCCccCCccCcCCCCCCEEecccCcCccccchhhhCCCCCCEEEccCCCCcccCCCc
Q 040495 254 TGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANE 333 (443)
Q Consensus 254 ~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 333 (443)
+ .++ .+. .+++|++|++++|++++ ++. +..+++|++|++++|++++..+ +..+++|+.|++++|.+++..+
T Consensus 98 ~-~~~-~~~-~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~-- 168 (308)
T 1h6u_A 98 K-NVS-AIA-GLQSIKTLDLTSTQITD-VTP-LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP-- 168 (308)
T ss_dssp S-CCG-GGT-TCTTCCEEECTTSCCCC-CGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--
T ss_pred C-Cch-hhc-CCCCCCEEECCCCCCCC-chh-hcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--
Confidence 7 444 333 67888888888888875 333 7788888888888888876544 7788888888888888776432
Q ss_pred hhhHhhhcCCCCCCEEEccCCcCcccCChhHhhhccCCCEEeccCCcCeecCchhhhcCCCCCeEeCcCCcCcc
Q 040495 334 LDFINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNRISGTIPPGIRSHANLNWLTMDSNLFTG 407 (443)
Q Consensus 334 ~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~n~~~~ 407 (443)
+..+++|++|++++|++++ ++. +.. .++|+.|++++|++++.. .+..+++|+.|++++|++++
T Consensus 169 ------l~~l~~L~~L~l~~n~l~~-~~~-l~~-l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 169 ------LANLSKLTTLKADDNKISD-ISP-LAS-LPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp ------GTTCTTCCEEECCSSCCCC-CGG-GGG-CTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEEC
T ss_pred ------hcCCCCCCEEECCCCccCc-Chh-hcC-CCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeec
Confidence 6778888888888888874 333 444 477888888888888543 37778888888888888873
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
Probab=99.87 E-value=2.8e-21 Score=180.04 Aligned_cols=82 Identities=26% Similarity=0.336 Sum_probs=40.8
Q ss_pred CCCCCCEEeCCCCcCCCCCchhhcCCCccCeEEccCCCCCCCCChhhhcCCCCceeeccCCcccccCCccccCCcCccEe
Q 040495 96 NLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSVDTNYLVGEIPSAIGSLFKLERL 175 (443)
Q Consensus 96 ~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L 175 (443)
.+++|++|++++|.++ .++ .+..+++|++|++++|.+++. +. +..+++|++|++++|.+++ ++ .+..+++|++|
T Consensus 39 ~l~~L~~L~l~~~~i~-~l~-~~~~l~~L~~L~L~~n~i~~~-~~-~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L 112 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVT-TIE-GVQYLNNLIGLELKDNQITDL-AP-LKNLTKITELELSGNPLKN-VS-AIAGLQSIKTL 112 (308)
T ss_dssp HHHTCCEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCCSCCEEECCSCCCSC-CG-GGTTCTTCCEE
T ss_pred HcCCcCEEEeeCCCcc-Cch-hhhccCCCCEEEccCCcCCCC-hh-HccCCCCCEEEccCCcCCC-ch-hhcCCCCCCEE
Confidence 4555555555555554 233 355555555555555555522 22 5555555555555555442 22 34444445555
Q ss_pred eeeccccC
Q 040495 176 FIFHNHIT 183 (443)
Q Consensus 176 ~l~~n~l~ 183 (443)
++++|.++
T Consensus 113 ~l~~n~l~ 120 (308)
T 1h6u_A 113 DLTSTQIT 120 (308)
T ss_dssp ECTTSCCC
T ss_pred ECCCCCCC
Confidence 55444444
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.86 E-value=2.7e-21 Score=169.60 Aligned_cols=195 Identities=19% Similarity=0.220 Sum_probs=112.7
Q ss_pred CEEEcccccCCCCCCccccCCCCCcEEEcccCcCcccCChhhhcCCCCCcEEeCCCCcCCccCCccCcCCCCCCEEeccc
Q 040495 220 RLLDIAFNHFSGMIPPPIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSR 299 (443)
Q Consensus 220 ~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~ 299 (443)
+.++++++.+. .+|..+ .++|++|++++|.++ .++...+..+++|++|++++|++++..+..+..+++|++|++++
T Consensus 10 ~~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~ 85 (208)
T 2o6s_A 10 TTVECYSQGRT-SVPTGI--PAQTTYLDLETNSLK-SLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLST 85 (208)
T ss_dssp TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEecCCCcc-CCCCCC--CCCCcEEEcCCCccC-cCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCC
Confidence 44555555554 233322 346677777777666 44444444566677777777766654444556666677777776
Q ss_pred CcCccccchhhhCCCCCCEEEccCCCCcccCCCchhhHhhhcCCCCCCEEEccCCcCcccCChhHhhhccCCCEEeccCC
Q 040495 300 NQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRN 379 (443)
Q Consensus 300 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n 379 (443)
|++++..+..+..+++|++|++++|.+++..+ ..+..+++|++|++++|++++..+..+.. .++|+.|++++|
T Consensus 86 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~------~~~~~l~~L~~L~l~~N~l~~~~~~~~~~-l~~L~~L~l~~N 158 (208)
T 2o6s_A 86 NQLQSLPNGVFDKLTQLKELALNTNQLQSLPD------GVFDKLTQLKDLRLYQNQLKSVPDGVFDR-LTSLQYIWLHDN 158 (208)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT------TTTTTCTTCCEEECCSSCCSCCCTTTTTT-CTTCCEEECCSC
T ss_pred CcCCccCHhHhcCccCCCEEEcCCCcCcccCH------hHhccCCcCCEEECCCCccceeCHHHhcc-CCCccEEEecCC
Confidence 66665555556666666666666666665554 34556666666666666666333322333 356666666666
Q ss_pred cCeecCchhhhcCCCCCeEeCcCCcCcccCchhhcCCCCCCEEEccCCcCcccCCcc
Q 040495 380 RISGTIPPGIRSHANLNWLTMDSNLFTGTIPPVIGELKNLQLLDLGGNFLQGSIPSS 436 (443)
Q Consensus 380 ~l~~~~p~~l~~~~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~ 436 (443)
++.+. +++|++|+++.|.++|.+|+.++.++. ++..|...|..+..
T Consensus 159 ~~~~~-------~~~l~~L~~~~n~~~g~ip~~~~~l~~----~~~~C~~~~~~~~~ 204 (208)
T 2o6s_A 159 PWDCT-------CPGIRYLSEWINKHSGVVRNSAGSVAP----DSAKCSGSGKPVRS 204 (208)
T ss_dssp CBCCC-------TTTTHHHHHHHHHCTTTBBCTTSSBCT----TCSBBTTTCCBGGG
T ss_pred CeecC-------CCCHHHHHHHHHhCCceeeccCccccC----CccccccCCCccee
Confidence 55532 345666666666666666666655443 44444444444433
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.86 E-value=3.8e-21 Score=192.24 Aligned_cols=187 Identities=24% Similarity=0.285 Sum_probs=141.7
Q ss_pred CCCEEEccCCcCCcccccccCCCCCCEEEcccccCCCCCCccccCCCCCcEEEcccCcCcccCChhhhcCCCCCcEEeCC
Q 040495 195 SLLAFDVRENILWGRIDSLVQLRNLRLLDIAFNHFSGMIPPPIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPN 274 (443)
Q Consensus 195 ~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~ 274 (443)
+++.|++++|.+++.+..+ .++|++|++++|.++ .+| ..+++|++|++++|.+++ +|. +. . +|++|+++
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~-~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LP-A--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CC-T--TCCEEECC
T ss_pred CccEEEeCCCCCCccCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hh-c--CCCEEECC
Confidence 7888888888888755444 377888888888887 566 456788888888888884 776 33 2 88888888
Q ss_pred CCcCCccCCccCcCCCCCCEEecccCcCccccchhhhCCCCCCEEEccCCCCcccCCCchhhHhhhcCCCCCCEEEccCC
Q 040495 275 GNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRN 354 (443)
Q Consensus 275 ~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n 354 (443)
+|++++ +|. .+++|+.|++++|++++ +|. .+++|+.|++++|.+++... +. ++|++|++++|
T Consensus 129 ~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~lp~--------l~--~~L~~L~Ls~N 190 (571)
T 3cvr_A 129 NNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTFLPE--------LP--ESLEALDVSTN 190 (571)
T ss_dssp SSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSCCCC--------CC--TTCCEEECCSS
T ss_pred CCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCCcch--------hh--CCCCEEECcCC
Confidence 888885 555 57888888888888886 444 56788888888888877332 22 78888888888
Q ss_pred cCcccCChhHhhhccCC-------CEEeccCCcCeecCchhhhcCCCCCeEeCcCCcCcccCchhhcCC
Q 040495 355 RFQGVLPQSMANFSSTI-------KQIAMGRNRISGTIPPGIRSHANLNWLTMDSNLFTGTIPPVIGEL 416 (443)
Q Consensus 355 ~l~~~~p~~~~~~~~~L-------~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~n~~~~~~p~~~~~l 416 (443)
+++ .+|. +. .+| +.|+|++|+++ .+|..+..+++|+.|+|++|.+++.+|..+..+
T Consensus 191 ~L~-~lp~-~~---~~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 191 LLE-SLPA-VP---VRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQ 253 (571)
T ss_dssp CCS-SCCC-CC-----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred CCC-chhh-HH---HhhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence 888 6776 32 256 88888888888 678878778888888888888888888776654
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.85 E-value=2.6e-21 Score=193.52 Aligned_cols=211 Identities=23% Similarity=0.264 Sum_probs=133.0
Q ss_pred CCCCCCCCC-----Cccce-eeCCCCCcEEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCCCCCchhhcCCCccCeE
Q 040495 54 SWNNSMSLC-----QWTGV-TCGRRHQRVTRLDLRNQSIGGPLSPYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGL 127 (443)
Q Consensus 54 ~w~~~~~~c-----~w~gv-~c~~~~~~v~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L 127 (443)
+|.....+| .|.++ .|.. .+++.|+++++.+++ +|..+ +++|++|++++|.++ .+| ..+++|++|
T Consensus 35 ~W~~~~~~~~~~~~~~~~l~~C~~--~~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L 105 (571)
T 3cvr_A 35 KWEKQALPGENRNEAVSLLKECLI--NQFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYL 105 (571)
T ss_dssp HHHTTCCTTCCHHHHHHHHHHHHH--TTCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEE
T ss_pred HHhccCCccccccchhhhcccccc--CCccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEE
Confidence 455455667 68888 6754 478999999999887 66655 378999999999988 677 457889999
Q ss_pred EccCCCCCCCCChhhhcCCCCceeeccCCcccccCCccccCCcCccEeeeeccccCccCCccccCCCCCCEEEccCCcCC
Q 040495 128 VLSNNSFSGTIPTNLSRRSNLIELSVDTNYLVGEIPSAIGSLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILW 207 (443)
Q Consensus 128 ~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 207 (443)
++++|.+++ +|. +.. +|++|++++|.+++ +|. .+++|++|++++|.+++ +|. .+++|++|++++|.++
T Consensus 106 ~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~ 173 (571)
T 3cvr_A 106 DACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLT 173 (571)
T ss_dssp ECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS
T ss_pred EccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCC
Confidence 999998885 666 554 88888888888875 665 56788888888888874 554 4556666666666655
Q ss_pred cccccccCCCCCCEEEcccccCCCCCCccccCCCCCcEEEcccCcCcccCChhhhcCCCCCcEEeCCCCcCCccCCccCc
Q 040495 208 GRIDSLVQLRNLRLLDIAFNHFSGMIPPPIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLS 287 (443)
Q Consensus 208 ~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~ 287 (443)
+.+. +. ++|+.|++++|.++ .+|. +.. +| ....+.|+.|++++|+++ .+|..+.
T Consensus 174 ~lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L------------------~~~~~~L~~L~Ls~N~l~-~lp~~l~ 227 (571)
T 3cvr_A 174 FLPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RN------------------HHSEETEIFFRCRENRIT-HIPENIL 227 (571)
T ss_dssp CCCC-CC--TTCCEEECCSSCCS-SCCC-CC----------------------------CCEEEECCSSCCC-CCCGGGG
T ss_pred Ccch-hh--CCCCEEECcCCCCC-chhh-HHH--hh------------------hcccccceEEecCCCcce-ecCHHHh
Confidence 5333 32 55555555555555 3333 322 33 000111155555555554 3444444
Q ss_pred CCCCCCEEecccCcCccccchhhh
Q 040495 288 NASRLEMIEFSRNQFSGRVSVDFS 311 (443)
Q Consensus 288 ~~~~L~~L~l~~n~l~~~~~~~~~ 311 (443)
.+++|+.|++++|.+++..|..+.
T Consensus 228 ~l~~L~~L~L~~N~l~~~~p~~l~ 251 (571)
T 3cvr_A 228 SLDPTCTIILEDNPLSSRIRESLS 251 (571)
T ss_dssp GSCTTEEEECCSSSCCHHHHHHHH
T ss_pred cCCCCCEEEeeCCcCCCcCHHHHH
Confidence 455555555555555555554443
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.85 E-value=4e-21 Score=168.51 Aligned_cols=181 Identities=18% Similarity=0.192 Sum_probs=133.8
Q ss_pred CCCCccceeeCCCCCcEEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCCCCCchhhcCCCccCeEEccCCCCCCCCC
Q 040495 60 SLCQWTGVTCGRRHQRVTRLDLRNQSIGGPLSPYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIP 139 (443)
Q Consensus 60 ~~c~w~gv~c~~~~~~v~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p 139 (443)
..|.|.++.|... .+.. +|.. -.++|++|++++|.+++..+..+.++++|++|++++|.+++..+
T Consensus 5 C~C~~~~v~c~~~------------~l~~-~p~~--~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 69 (208)
T 2o6s_A 5 CSCSGTTVECYSQ------------GRTS-VPTG--IPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPN 69 (208)
T ss_dssp CEEETTEEECCSS------------CCSS-CCSC--CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCT
T ss_pred CEECCCEEEecCC------------CccC-CCCC--CCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccCh
Confidence 3478888888642 1211 2322 23578888888888876666667788888888888888886555
Q ss_pred hhhhcCCCCceeeccCCcccccCCccccCCcCccEeeeeccccCccCCccccCCCCCCEEEccCCcCCccc-ccccCCCC
Q 040495 140 TNLSRRSNLIELSVDTNYLVGEIPSAIGSLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRI-DSLVQLRN 218 (443)
Q Consensus 140 ~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~-~~l~~l~~ 218 (443)
..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++.. ..+..+++
T Consensus 70 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~ 149 (208)
T 2o6s_A 70 GVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTS 149 (208)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTT
T ss_pred hhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCC
Confidence 66778888888888888887555555778888888888888888666666778888888888888887766 45677888
Q ss_pred CCEEEcccccCCCCCCccccCCCCCcEEEcccCcCcccCChhhh
Q 040495 219 LRLLDIAFNHFSGMIPPPIFNISSLEVISLSENRFTGSLPVDAG 262 (443)
Q Consensus 219 L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~ 262 (443)
|++|++++|.+.+ .+++|+.|+++.|.++|.+|..+.
T Consensus 150 L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip~~~~ 186 (208)
T 2o6s_A 150 LQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAG 186 (208)
T ss_dssp CCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTBBCTTS
T ss_pred ccEEEecCCCeec-------CCCCHHHHHHHHHhCCceeeccCc
Confidence 8888888887653 345788888888888888887665
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
Probab=99.84 E-value=2.6e-20 Score=176.89 Aligned_cols=228 Identities=18% Similarity=0.115 Sum_probs=157.4
Q ss_pred ccccccCCCCCCEEeCCCCcCCCCCchhhcCCCccCeEEccCCCCCCCCC-hhhhcCCCCce-eeccCCcccccCCcccc
Q 040495 90 LSPYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIP-TNLSRRSNLIE-LSVDTNYLVGEIPSAIG 167 (443)
Q Consensus 90 ~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p-~~l~~l~~L~~-L~l~~n~l~~~~p~~l~ 167 (443)
+|..+ .+++++|+|++|.++...+.+|+++++|++|++++|.+.+.+| ..|.+++++++ +.+.+|+++...|..|.
T Consensus 24 iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~ 101 (350)
T 4ay9_X 24 IPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQ 101 (350)
T ss_dssp CCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBC
T ss_pred cCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhh
Confidence 45444 3679999999999985555678999999999999999876665 45678888775 55667888877778889
Q ss_pred CCcCccEeeeeccccCccCCccccCCCCCCEEEccCC-cCCccc-ccccCC-CCCCEEEcccccCCCCCCccccCCCCCc
Q 040495 168 SLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVREN-ILWGRI-DSLVQL-RNLRLLDIAFNHFSGMIPPPIFNISSLE 244 (443)
Q Consensus 168 ~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n-~l~~~~-~~l~~l-~~L~~L~l~~n~~~~~~~~~l~~l~~L~ 244 (443)
.+++|++|++++|.+....+..+....++..+++.++ .+.... ..+..+ ..++.|++++|.++ .++.......+|+
T Consensus 102 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~-~i~~~~f~~~~L~ 180 (350)
T 4ay9_X 102 NLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLD 180 (350)
T ss_dssp CCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-EECTTSSTTEEEE
T ss_pred hccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc-CCChhhccccchh
Confidence 9999999999999998665555666677778887653 454444 344444 35777888888776 3454555556777
Q ss_pred EEEcccCcCcccCChhhhcCCCCCcEEeCCCCcCCccCCccCcCCCCCCEEecccCcCccccchhhhCCCCCCEEEccCC
Q 040495 245 VISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGIN 324 (443)
Q Consensus 245 ~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 324 (443)
++++.+++..+.+|...+..+++|++|++++|+++ .+|.. .+.+|+.|...++.--..+|. +..+++|+.+++.++
T Consensus 181 ~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~-~lp~~--~~~~L~~L~~l~~~~l~~lP~-l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 181 ELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSY--GLENLKKLRARSTYNLKKLPT-LEKLVALMEASLTYP 256 (350)
T ss_dssp EEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC-CCCSS--SCTTCCEEECTTCTTCCCCCC-TTTCCSCCEEECSCH
T ss_pred HHhhccCCcccCCCHHHhccCcccchhhcCCCCcC-ccChh--hhccchHhhhccCCCcCcCCC-chhCcChhhCcCCCC
Confidence 77777544334777766667777888888888777 33432 244555665555433334443 666777777777543
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
Probab=99.84 E-value=1.9e-20 Score=177.75 Aligned_cols=239 Identities=17% Similarity=0.106 Sum_probs=170.7
Q ss_pred CEEeCCCCcCCCCCchhhcCCCccCeEEccCCCCCCCCChhhhcCCCCceeeccCCcccccCCc-cccCCcCccE-eeee
Q 040495 101 RYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSVDTNYLVGEIPS-AIGSLFKLER-LFIF 178 (443)
Q Consensus 101 ~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~-~l~~l~~L~~-L~l~ 178 (443)
++++.++++++ .+|..+ .+++++|++++|.++...+..|.++++|++|++++|++.+.+|. .|.+++++++ +.+.
T Consensus 12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 34555566666 667655 35799999999999955556789999999999999998766654 5788888765 5667
Q ss_pred ccccCccCCccccCCCCCCEEEccCCcCCccc-ccccCCCCCCEEEccc-ccCCCCCCccccCCC-CCcEEEcccCcCcc
Q 040495 179 HNHITGQLPASIGNLSSLLAFDVRENILWGRI-DSLVQLRNLRLLDIAF-NHFSGMIPPPIFNIS-SLEVISLSENRFTG 255 (443)
Q Consensus 179 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~-~~l~~l~~L~~L~l~~-n~~~~~~~~~l~~l~-~L~~L~l~~n~l~~ 255 (443)
.|+++...|..+..+++|++|++++|.+.... ..+....++..+++.+ +.+....+..+..+. .++.|++++|.++
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~- 167 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ- 167 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-
T ss_pred CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc-
Confidence 78888777888899999999999999887766 4555666778888865 445433344555543 5788899999887
Q ss_pred cCChhhhcCCCCCcEEeCCC-CcCCccCCccCcCCCCCCEEecccCcCccccchhhhCCCCCCEEEccCCCCcccCCCch
Q 040495 256 SLPVDAGVNLPNLRQLSPNG-NNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANEL 334 (443)
Q Consensus 256 ~~~~~~~~~~~~L~~L~L~~-n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 334 (443)
.+|...+ ...+++++++.+ |.++...+..|..+++|++|++++|+++...+.. +.+|+.|.+.++.--...|
T Consensus 168 ~i~~~~f-~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~---~~~L~~L~~l~~~~l~~lP--- 240 (350)
T 4ay9_X 168 EIHNSAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG---LENLKKLRARSTYNLKKLP--- 240 (350)
T ss_dssp EECTTSS-TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSS---CTTCCEEECTTCTTCCCCC---
T ss_pred CCChhhc-cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhh---hccchHhhhccCCCcCcCC---
Confidence 7777766 567888888875 4555333356788888999999999888554433 4566666665543222223
Q ss_pred hhHhhhcCCCCCCEEEccCC
Q 040495 335 DFINLLANCSKLERLYFNRN 354 (443)
Q Consensus 335 ~~~~~~~~~~~L~~L~l~~n 354 (443)
.+.++++|+.+++.++
T Consensus 241 ----~l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 241 ----TLEKLVALMEASLTYP 256 (350)
T ss_dssp ----CTTTCCSCCEEECSCH
T ss_pred ----CchhCcChhhCcCCCC
Confidence 2667788888888654
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.80 E-value=7.5e-19 Score=155.24 Aligned_cols=154 Identities=19% Similarity=0.259 Sum_probs=116.1
Q ss_pred cEEEcccCcCcccCChhhhcCCCCCcEEeCCCCcCCccCC-ccCcCCCCCCEEecccCcCccccchhhhCCCCCCEEEcc
Q 040495 244 EVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIP-VSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMG 322 (443)
Q Consensus 244 ~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~-~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 322 (443)
+++++++|.++ .+|..+ ...+++|++++|++++..+ ..+..+++|++|++++|++++..+..|..+++|++|+++
T Consensus 14 ~~l~~s~n~l~-~iP~~~---~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 89 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHI---PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT 89 (220)
T ss_dssp TEEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEeEeCCCCcc-cCccCC---CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECC
Confidence 57888888887 677654 3456788888888876544 446778888888888888887777778888888888888
Q ss_pred CCCCcccCCCchhhHhhhcCCCCCCEEEccCCcCcccCChhHhhhccCCCEEeccCCcCeecCchhhhcCCCCCeEeCcC
Q 040495 323 INNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNRISGTIPPGIRSHANLNWLTMDS 402 (443)
Q Consensus 323 ~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~ 402 (443)
+|.+++..+ ..+..+++|++|++++|++++..|..+..+ ++|+.|+|++|++++..|..+..+++|++|++++
T Consensus 90 ~N~l~~~~~------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 162 (220)
T 2v70_A 90 SNRLENVQH------KMFKGLESLKTLMLRSNRITCVGNDSFIGL-SSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLA 162 (220)
T ss_dssp SSCCCCCCG------GGGTTCSSCCEEECTTSCCCCBCTTSSTTC-TTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CCccCccCH------hHhcCCcCCCEEECCCCcCCeECHhHcCCC-ccCCEEECCCCcCCEECHHHhcCCCCCCEEEecC
Confidence 888877666 557777888888888888876666666653 6788888888888776677777777888888888
Q ss_pred CcCccc
Q 040495 403 NLFTGT 408 (443)
Q Consensus 403 n~~~~~ 408 (443)
|.+.+.
T Consensus 163 N~l~c~ 168 (220)
T 2v70_A 163 NPFNCN 168 (220)
T ss_dssp CCEECS
T ss_pred cCCcCC
Confidence 877644
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
Probab=99.80 E-value=9.1e-19 Score=161.63 Aligned_cols=173 Identities=20% Similarity=0.311 Sum_probs=127.4
Q ss_pred ccCCCCCCEEEcccccCCCCCCccccCCCCCcEEEcccCcCcccCChhhhcCCCCCcEEeCCCCcCCccCCccCcCCCCC
Q 040495 213 LVQLRNLRLLDIAFNHFSGMIPPPIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRL 292 (443)
Q Consensus 213 l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L 292 (443)
...+++|+.|++++|.+... + .+..+++|++|++++|.+++ ++. + ..+++|++|++++|.+++ ++ .+..+++|
T Consensus 42 ~~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~-~~~-l-~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L 114 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTD-IKP-L-ANLKNLGWLFLDENKVKD-LS-SLKDLKKL 114 (291)
T ss_dssp HHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCC-CGG-G-TTCTTCCEEECCSSCCCC-GG-GGTTCTTC
T ss_pred hhhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCC-Ccc-c-ccCCCCCEEECCCCcCCC-Ch-hhccCCCC
Confidence 34577888888888888743 3 47778888888888888874 443 3 378888888888888874 33 37778888
Q ss_pred CEEecccCcCccccchhhhCCCCCCEEEccCCCCcccCCCchhhHhhhcCCCCCCEEEccCCcCcccCChhHhhhccCCC
Q 040495 293 EMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIK 372 (443)
Q Consensus 293 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~ 372 (443)
++|++++|++++. ..+..+++|+.|++++|.+++. ..+..+++|++|++++|++++..| +.. .++|+
T Consensus 115 ~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--------~~l~~l~~L~~L~L~~N~l~~~~~--l~~-l~~L~ 181 (291)
T 1h6t_A 115 KSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--------TVLSRLTKLDTLSLEDNQISDIVP--LAG-LTKLQ 181 (291)
T ss_dssp CEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--------GGGGGCTTCSEEECCSSCCCCCGG--GTT-CTTCC
T ss_pred CEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--------hhhccCCCCCEEEccCCccccchh--hcC-CCccC
Confidence 8888888888764 4577788888888888877765 236777888888888888875433 444 37788
Q ss_pred EEeccCCcCeecCchhhhcCCCCCeEeCcCCcCcc
Q 040495 373 QIAMGRNRISGTIPPGIRSHANLNWLTMDSNLFTG 407 (443)
Q Consensus 373 ~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~n~~~~ 407 (443)
.|++++|.+++ ++ .+..+++|+.|++++|+++.
T Consensus 182 ~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 182 NLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp EEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEEC
T ss_pred EEECCCCcCCC-Ch-hhccCCCCCEEECcCCcccC
Confidence 88888888874 44 37777888888888887763
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
Probab=99.79 E-value=1.3e-18 Score=153.77 Aligned_cols=152 Identities=16% Similarity=0.245 Sum_probs=122.2
Q ss_pred cEEEcccCcCcccCChhhhcCCCCCcEEeCCCCcCCccCCccCcCCCCCCEEecccCcCccccchhhhCCCCCCEEEccC
Q 040495 244 EVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGI 323 (443)
Q Consensus 244 ~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 323 (443)
+.++++++.++ .+|..+ .+++++|++++|++++..+..+..+++|++|++++|++++..|..|..+++|++|++++
T Consensus 14 ~~v~c~~~~l~-~iP~~l---~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~ 89 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNL---PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG 89 (220)
T ss_dssp TEEECTTSCCS-SCCSSC---CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCS
T ss_pred CEEEcCCCCcC-cCCCcc---CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC
Confidence 57888888887 777654 36888999999988876667888888899999999888888888888888888888888
Q ss_pred CCCcccCCCchhhHhhhcCCCCCCEEEccCCcCcccCChhHhhhccCCCEEeccCCcCeecCchhhhcCCCCCeEeCcCC
Q 040495 324 NNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNRISGTIPPGIRSHANLNWLTMDSN 403 (443)
Q Consensus 324 n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~n 403 (443)
|.++...+ ..+.++++|++|++++|++++..|..+..+ ++|+.|+|++|++++..+..+..+++|++|++++|
T Consensus 90 N~l~~l~~------~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 162 (220)
T 2v9t_B 90 NKITELPK------SLFEGLFSLQLLLLNANKINCLRVDAFQDL-HNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162 (220)
T ss_dssp SCCCCCCT------TTTTTCTTCCEEECCSSCCCCCCTTTTTTC-TTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred CcCCccCH------hHccCCCCCCEEECCCCCCCEeCHHHcCCC-CCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCC
Confidence 88887665 557788888888888888886666666664 78888888888888666666788888888888888
Q ss_pred cCc
Q 040495 404 LFT 406 (443)
Q Consensus 404 ~~~ 406 (443)
++.
T Consensus 163 ~~~ 165 (220)
T 2v9t_B 163 PFI 165 (220)
T ss_dssp CEE
T ss_pred CcC
Confidence 775
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.2e-18 Score=154.89 Aligned_cols=163 Identities=21% Similarity=0.218 Sum_probs=133.3
Q ss_pred CCCCCCCCCCccceeeCCCCCcEEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCCCCCchhhcCCCccCeEEccCCC
Q 040495 54 SWNNSMSLCQWTGVTCGRRHQRVTRLDLRNQSIGGPLSPYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNS 133 (443)
Q Consensus 54 ~w~~~~~~c~w~gv~c~~~~~~v~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~ 133 (443)
.|....+.|.|.++.|... .+ +.+|..+ .++|++|++++|.+++..|..+.++++|++|++++|.
T Consensus 11 ~~~~~~~~Cs~~~v~c~~~------------~l-~~ip~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~ 75 (229)
T 3e6j_A 11 AACPSQCSCSGTTVDCRSK------------RH-ASVPAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQ 75 (229)
T ss_dssp CCCCTTCEEETTEEECTTS------------CC-SSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred ccCCCCCEEeCCEeEccCC------------Cc-CccCCCC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCC
Confidence 3555667899999988642 22 2234333 2789999999999998888889999999999999999
Q ss_pred CCCCCChhhhcCCCCceeeccCCcccccCCccccCCcCccEeeeeccccCccCCccccCCCCCCEEEccCCcCCccc-cc
Q 040495 134 FSGTIPTNLSRRSNLIELSVDTNYLVGEIPSAIGSLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRI-DS 212 (443)
Q Consensus 134 ~~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~-~~ 212 (443)
++...+..|..+++|++|++++|++++..+..+..+++|++|++++|.++ .+|..+..+++|++|++++|.+.... ..
T Consensus 76 l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~ 154 (229)
T 3e6j_A 76 LGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGA 154 (229)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTT
T ss_pred CCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHH
Confidence 98655666788999999999999998666666788999999999999998 77888899999999999999888777 66
Q ss_pred ccCCCCCCEEEcccccCCCC
Q 040495 213 LVQLRNLRLLDIAFNHFSGM 232 (443)
Q Consensus 213 l~~l~~L~~L~l~~n~~~~~ 232 (443)
+..+++|+.|++++|.+...
T Consensus 155 ~~~l~~L~~L~l~~N~~~c~ 174 (229)
T 3e6j_A 155 FDRLSSLTHAYLFGNPWDCE 174 (229)
T ss_dssp TTTCTTCCEEECTTSCBCTT
T ss_pred HhCCCCCCEEEeeCCCccCC
Confidence 88899999999999988754
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.79 E-value=8.9e-19 Score=166.94 Aligned_cols=176 Identities=18% Similarity=0.261 Sum_probs=117.7
Q ss_pred CEEEcccccCCCCCCccccCCCCCcEEEcccCcCcccCChhhhc-CCCCCcEEeCCCCcCCccCCccCcCCCCCCEEecc
Q 040495 220 RLLDIAFNHFSGMIPPPIFNISSLEVISLSENRFTGSLPVDAGV-NLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFS 298 (443)
Q Consensus 220 ~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~ 298 (443)
+.++++++.+. .+|..+. ..++.|++++|.++ .++...+. .+++|++|++++|++++..+..|..+++|++|+++
T Consensus 21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~-~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCC-EECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCC-ccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence 46777777776 3454443 34677777777776 44444443 56777777777777776666667777777777777
Q ss_pred cCcCccccchhhhCCCCCCEEEccCCCCcccCCCchhhHhhhcCCCCCCEEEccCCcCcccCChhHh---hhccCCCEEe
Q 040495 299 RNQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQSMA---NFSSTIKQIA 375 (443)
Q Consensus 299 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~---~~~~~L~~L~ 375 (443)
+|++++..+..|..+++|+.|++++|.++...+ ..+..+++|++|++++|+++ .+|...+ ...++|+.|+
T Consensus 97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~------~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~~~~l~~L~~L~ 169 (361)
T 2xot_A 97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDR------NAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLD 169 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCCEECT------TTTTTCTTCCEEECCSSCCC-SCCGGGTC----CTTCCEEE
T ss_pred CCcCCcCCHHHhCCCcCCCEEECCCCcccEECH------HHhCCcccCCEEECCCCcCC-eeCHHHhcCcccCCcCCEEE
Confidence 777776666667777777777777777776665 45667777777777777777 4555442 1136677777
Q ss_pred ccCCcCeecCchhhhcCCC--CCeEeCcCCcCc
Q 040495 376 MGRNRISGTIPPGIRSHAN--LNWLTMDSNLFT 406 (443)
Q Consensus 376 L~~n~l~~~~p~~l~~~~~--L~~L~L~~n~~~ 406 (443)
|++|++++..+..+..++. ++.|+|++|++.
T Consensus 170 L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 170 LSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred CCCCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence 7777777544455666665 366777777665
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.78 E-value=3.1e-18 Score=152.27 Aligned_cols=155 Identities=17% Similarity=0.267 Sum_probs=121.0
Q ss_pred CcEEEcccCcCcccCChhhhcCCCCCcEEeCCCCcCCccCCccCcCCCCCCEEecccCcCccccchhhhCCCCCCEEEcc
Q 040495 243 LEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMG 322 (443)
Q Consensus 243 L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 322 (443)
-+.++.+++.++ .+|..+ .++|++|++++|++++..|..+..+++|++|++++|++++..+..|..+++|+.|+++
T Consensus 21 ~~~v~c~~~~l~-~ip~~~---~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls 96 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGI---PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLG 96 (229)
T ss_dssp TTEEECTTSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEeEccCCCcC-ccCCCC---CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECC
Confidence 467888888876 777654 3788888888888887778888888888888888888876666667888888888888
Q ss_pred CCCCcccCCCchhhHhhhcCCCCCCEEEccCCcCcccCChhHhhhccCCCEEeccCCcCeecCchhhhcCCCCCeEeCcC
Q 040495 323 INNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNRISGTIPPGIRSHANLNWLTMDS 402 (443)
Q Consensus 323 ~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~ 402 (443)
+|.+++..+ ..+..+++|++|++++|+++ .+|..+..+ ++|+.|++++|++++..+..+..+++|+.|++++
T Consensus 97 ~N~l~~l~~------~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~ 168 (229)
T 3e6j_A 97 TNQLTVLPS------AVFDRLVHLKELFMCCNKLT-ELPRGIERL-THLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFG 168 (229)
T ss_dssp SSCCCCCCT------TTTTTCTTCCEEECCSSCCC-SCCTTGGGC-TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred CCcCCccCh------hHhCcchhhCeEeccCCccc-ccCcccccC-CCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeC
Confidence 888887666 45677888888888888888 777777664 7788888888888855556677788888888888
Q ss_pred CcCcccC
Q 040495 403 NLFTGTI 409 (443)
Q Consensus 403 n~~~~~~ 409 (443)
|++....
T Consensus 169 N~~~c~c 175 (229)
T 3e6j_A 169 NPWDCEC 175 (229)
T ss_dssp SCBCTTB
T ss_pred CCccCCc
Confidence 8877544
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
Probab=99.78 E-value=1e-18 Score=161.24 Aligned_cols=171 Identities=23% Similarity=0.330 Sum_probs=85.7
Q ss_pred CCCCCCEEeCCCCcCCCCCchhhcCCCccCeEEccCCCCCCCCChhhhcCCCCceeeccCCcccccCCccccCCcCccEe
Q 040495 96 NLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSVDTNYLVGEIPSAIGSLFKLERL 175 (443)
Q Consensus 96 ~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L 175 (443)
.+++|++|++++|.+.. ++ .+..+++|++|++++|.+++..+ +..+++|++|++++|.+++ +| .+..+++|++|
T Consensus 44 ~l~~L~~L~l~~~~i~~-~~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L 117 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSL 117 (291)
T ss_dssp HHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEE
T ss_pred hcCcccEEEccCCCccc-Ch-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEE
Confidence 44555555555555442 22 24445555555555555543222 4445555555555555442 11 24444444444
Q ss_pred eeeccccCccCCccccCCCCCCEEEccCCcCCcccccccCCCCCCEEEcccccCCCCCCccccCCCCCcEEEcccCcCcc
Q 040495 176 FIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLRLLDIAFNHFSGMIPPPIFNISSLEVISLSENRFTG 255 (443)
Q Consensus 176 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~ 255 (443)
++++|.++ +. ..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++
T Consensus 118 ~L~~n~i~------------------------~~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~ 170 (291)
T 1h6t_A 118 SLEHNGIS------------------------DI-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISD 170 (291)
T ss_dssp ECTTSCCC------------------------CC-GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCC
T ss_pred ECCCCcCC------------------------CC-hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCcccc
Confidence 44444444 22 2333444555555555555432 345555566666666665553
Q ss_pred cCChhhhcCCCCCcEEeCCCCcCCccCCccCcCCCCCCEEecccCcCcc
Q 040495 256 SLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSG 304 (443)
Q Consensus 256 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~ 304 (443)
++. + ..+++|++|++++|.+++ ++ .+..+++|+.|++++|+++.
T Consensus 171 -~~~-l-~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 171 -IVP-L-AGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp -CGG-G-TTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEEC
T ss_pred -chh-h-cCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCcccC
Confidence 222 2 256666666666666653 33 25666666666666666654
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=2.5e-18 Score=151.89 Aligned_cols=157 Identities=18% Similarity=0.211 Sum_probs=130.6
Q ss_pred CEEEcccccCCCCCCccccCCCCCcEEEcccCcCcccCChhhhcCCCCCcEEeCCCCcCCccCCccCcCCCCCCEEeccc
Q 040495 220 RLLDIAFNHFSGMIPPPIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSR 299 (443)
Q Consensus 220 ~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~ 299 (443)
+.+++++|.++. +|..+. ..+++|++++|.+++..+...+..+++|++|++++|++++..+..+..+++|++|++++
T Consensus 14 ~~l~~s~n~l~~-iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLNK-IPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCccc-CccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 578999988874 666553 45689999999998555555555789999999999999877777899999999999999
Q ss_pred CcCccccchhhhCCCCCCEEEccCCCCcccCCCchhhHhhhcCCCCCCEEEccCCcCcccCChhHhhhccCCCEEeccCC
Q 040495 300 NQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRN 379 (443)
Q Consensus 300 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n 379 (443)
|++++..+..|..+++|++|++++|.+++..+ ..+..+++|++|++++|++++..|..+..+ ++|+.|++++|
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~------~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l-~~L~~L~L~~N 163 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGN------DSFIGLSSVRLLSLYDNQITTVAPGAFDTL-HSLSTLNLLAN 163 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCT------TSSTTCTTCSEEECTTSCCCCBCTTTTTTC-TTCCEEECCSC
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECH------hHcCCCccCCEEECCCCcCCEECHHHhcCC-CCCCEEEecCc
Confidence 99998888888999999999999999998877 567888999999999999997767777764 78999999999
Q ss_pred cCeecCc
Q 040495 380 RISGTIP 386 (443)
Q Consensus 380 ~l~~~~p 386 (443)
++++..+
T Consensus 164 ~l~c~c~ 170 (220)
T 2v70_A 164 PFNCNCY 170 (220)
T ss_dssp CEECSGG
T ss_pred CCcCCCc
Confidence 9886543
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
Probab=99.78 E-value=3e-18 Score=173.16 Aligned_cols=167 Identities=22% Similarity=0.301 Sum_probs=74.8
Q ss_pred cEEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCCCCCchhhcCCCccCeEEccCCCCCCCCChhhhcCCCCceeecc
Q 040495 75 RVTRLDLRNQSIGGPLSPYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSVD 154 (443)
Q Consensus 75 ~v~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~ 154 (443)
+++.|+++++.+... + .+..+++|+.|+|++|.+.+..+ +..+++|+.|++++|.+++ +| .+..+++|++|+++
T Consensus 44 ~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~Ls 117 (605)
T 1m9s_A 44 SIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSLSLE 117 (605)
T ss_dssp TCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEEECT
T ss_pred CCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEEEec
Confidence 344444544444332 1 24444555555555554443222 4445555555555554442 22 34444555555555
Q ss_pred CCcccccCCccccCCcCccEeeeeccccCccCCccccCCCCCCEEEccCCcCCcccccccCCCCCCEEEcccccCCCCCC
Q 040495 155 TNYLVGEIPSAIGSLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLRLLDIAFNHFSGMIP 234 (443)
Q Consensus 155 ~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~~~~~~~ 234 (443)
+|.+.+ + +.+..+++|+.|++++|.+++. ..+..+++|+.|++++|.+.+..+ +..+++|+.|++++|.+.+.
T Consensus 118 ~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~i~~l-- 190 (605)
T 1m9s_A 118 HNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDL-- 190 (605)
T ss_dssp TSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBC--
T ss_pred CCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCCCCCC--
Confidence 554442 1 2344444455555555544432 334444444444444444443333 44444444444444444432
Q ss_pred ccccCCCCCcEEEcccCcCc
Q 040495 235 PPIFNISSLEVISLSENRFT 254 (443)
Q Consensus 235 ~~l~~l~~L~~L~l~~n~l~ 254 (443)
+.+..+++|+.|++++|.++
T Consensus 191 ~~l~~l~~L~~L~L~~N~l~ 210 (605)
T 1m9s_A 191 RALAGLKNLDVLELFSQECL 210 (605)
T ss_dssp GGGTTCTTCSEEECCSEEEE
T ss_pred hHHccCCCCCEEEccCCcCc
Confidence 23444444444444444443
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
Probab=99.78 E-value=3.2e-18 Score=151.17 Aligned_cols=154 Identities=16% Similarity=0.247 Sum_probs=125.1
Q ss_pred CEEEcccccCCCCCCccccCCCCCcEEEcccCcCcccCChhhhcCCCCCcEEeCCCCcCCccCCccCcCCCCCCEEeccc
Q 040495 220 RLLDIAFNHFSGMIPPPIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSR 299 (443)
Q Consensus 220 ~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~ 299 (443)
+.++++++.++ .+|..+. +++++|++++|.++ .++...+..+++|++|++++|++++..|..|..+++|++|++++
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~-~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~ 89 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG 89 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCC-EECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCS
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCC-CcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC
Confidence 56888888877 4565544 68899999999988 55554444788999999999999887788899999999999999
Q ss_pred CcCccccchhhhCCCCCCEEEccCCCCcccCCCchhhHhhhcCCCCCCEEEccCCcCcccCChhHhhhccCCCEEeccCC
Q 040495 300 NQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRN 379 (443)
Q Consensus 300 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n 379 (443)
|++++..+..|..+++|++|++++|.+++..+ ..+..+++|++|++++|++++..+..+.. .++|+.|++++|
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~------~~~~~l~~L~~L~L~~N~l~~~~~~~~~~-l~~L~~L~L~~N 162 (220)
T 2v9t_B 90 NKITELPKSLFEGLFSLQLLLLNANKINCLRV------DAFQDLHNLNLLSLYDNKLQTIAKGTFSP-LRAIQTMHLAQN 162 (220)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT------TTTTTCTTCCEEECCSSCCSCCCTTTTTT-CTTCCEEECCSS
T ss_pred CcCCccCHhHccCCCCCCEEECCCCCCCEeCH------HHcCCCCCCCEEECCCCcCCEECHHHHhC-CCCCCEEEeCCC
Confidence 99997766678889999999999999988877 56888899999999999998555555555 478999999999
Q ss_pred cCeec
Q 040495 380 RISGT 384 (443)
Q Consensus 380 ~l~~~ 384 (443)
++...
T Consensus 163 ~~~c~ 167 (220)
T 2v9t_B 163 PFICD 167 (220)
T ss_dssp CEECS
T ss_pred CcCCC
Confidence 88753
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
Probab=99.77 E-value=2.5e-18 Score=173.70 Aligned_cols=190 Identities=21% Similarity=0.288 Sum_probs=112.9
Q ss_pred CccEeeeeccccCccCCccccCCCCCCEEEccCCcCCcccccccCCCCCCEEEcccccCCCCCCccccCCCCCcEEEccc
Q 040495 171 KLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLRLLDIAFNHFSGMIPPPIFNISSLEVISLSE 250 (443)
Q Consensus 171 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~ 250 (443)
++..+.+..+.+.+.. .+..+++|+.|++++|.+... +.+..+++|+.|++++|.+.+..+ +..+++|+.|++++
T Consensus 22 ~l~~l~l~~~~i~~~~--~~~~L~~L~~L~l~~n~i~~l-~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~ 96 (605)
T 1m9s_A 22 ETIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSV-QGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDE 96 (605)
T ss_dssp HHHHHHTTCSCTTSEE--CHHHHTTCCCCBCTTCCCCCC-TTGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCS
T ss_pred HHHHHhccCCCccccc--chhcCCCCCEEECcCCCCCCC-hHHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcC
Confidence 3444455555554332 245666777777777766543 346666777777777777665433 66667777777777
Q ss_pred CcCcccCChhhhcCCCCCcEEeCCCCcCCccCCccCcCCCCCCEEecccCcCccccchhhhCCCCCCEEEccCCCCcccC
Q 040495 251 NRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLGTRT 330 (443)
Q Consensus 251 n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 330 (443)
|.++ .+| .+. .+++|++|++++|.+.+ + ..+..+++|+.|++++|.+++. ..+..+++|+.|+|++|.+.+..
T Consensus 97 N~l~-~l~-~l~-~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~ 169 (605)
T 1m9s_A 97 NKIK-DLS-SLK-DLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIV 169 (605)
T ss_dssp SCCC-CCT-TST-TCTTCCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCG
T ss_pred CCCC-CCh-hhc-cCCCCCEEEecCCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCch
Confidence 7665 333 233 56666666666666663 2 3356666666666666666654 34566666666666666665543
Q ss_pred CCchhhHhhhcCCCCCCEEEccCCcCcccCChhHhhhccCCCEEeccCCcCee
Q 040495 331 ANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNRISG 383 (443)
Q Consensus 331 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~ 383 (443)
+ +..+++|+.|+|++|++++ +| .+.. +++|+.|+|++|++++
T Consensus 170 ~--------l~~l~~L~~L~Ls~N~i~~-l~-~l~~-l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 170 P--------LAGLTKLQNLYLSKNHISD-LR-ALAG-LKNLDVLELFSQECLN 211 (605)
T ss_dssp G--------GTTCTTCCEEECCSSCCCB-CG-GGTT-CTTCSEEECCSEEEEC
T ss_pred h--------hccCCCCCEEECcCCCCCC-Ch-HHcc-CCCCCEEEccCCcCcC
Confidence 3 5556666666666666663 33 2444 2566666666666654
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=7.4e-21 Score=191.08 Aligned_cols=220 Identities=15% Similarity=0.112 Sum_probs=123.6
Q ss_pred cCCCCCCEEeCCCCcCCCCCchhhcCCCccCeEEccCCCCCCCCChhhhcCCCCceeeccCCcccccCCccccCCcCccE
Q 040495 95 GNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSVDTNYLVGEIPSAIGSLFKLER 174 (443)
Q Consensus 95 ~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~ 174 (443)
...++|+.|+|++|.++ .+|..++++++|+.|++++|......|..+ ..+...+..|..++.+++|+.
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll-----------~~~~~~~~~~~~l~~l~~L~~ 413 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLM-----------RALDPLLYEKETLQYFSTLKA 413 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-----------HHHCTGGGHHHHHHHHHHHHH
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHH-----------HhcccccCCHHHHHHHHhccc
Confidence 34555666666666554 556666666666666654442100000000 000123344455555555655
Q ss_pred ee-eeccccCccCCccccCCCCCCEEEccCCcCCcccccccCCCCCCEEEcccccCCCCCCccccCCCCCcEEEcccCcC
Q 040495 175 LF-IFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLRLLDIAFNHFSGMIPPPIFNISSLEVISLSENRF 253 (443)
Q Consensus 175 L~-l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l 253 (443)
|+ ++.|.+. .|+.+.+.+|.+..... ..|+.|++++|.+++ +|. +..+++|+.|++++|.+
T Consensus 414 L~~l~~n~~~-----------~L~~l~l~~n~i~~l~~-----~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l 475 (567)
T 1dce_A 414 VDPMRAAYLD-----------DLRSKFLLENSVLKMEY-----ADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRL 475 (567)
T ss_dssp HCGGGHHHHH-----------HHHHHHHHHHHHHHHHH-----TTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCC
T ss_pred Ccchhhcccc-----------hhhhhhhhcccccccCc-----cCceEEEecCCCCCC-CcC-ccccccCcEeecCcccc
Confidence 55 4444322 11112222222221111 136666777776664 454 66677777777777777
Q ss_pred cccCChhhhcCCCCCcEEeCCCCcCCccCCccCcCCCCCCEEecccCcCcccc-chhhhCCCCCCEEEccCCCCcccCCC
Q 040495 254 TGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRV-SVDFSRLKNLSFLNMGINNLGTRTAN 332 (443)
Q Consensus 254 ~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~ 332 (443)
+ .+|..+. .+++|+.|++++|++++ +| .++.+++|+.|++++|++++.. |..+..+++|+.|++++|.+++.++.
T Consensus 476 ~-~lp~~~~-~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~ 551 (567)
T 1dce_A 476 R-ALPPALA-ALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGI 551 (567)
T ss_dssp C-CCCGGGG-GCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSC
T ss_pred c-ccchhhh-cCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccH
Confidence 6 6666555 67777777777777774 55 6777777777777777777665 77777777777777777777776552
Q ss_pred chhhHhhhcCCCCCCEEEc
Q 040495 333 ELDFINLLANCSKLERLYF 351 (443)
Q Consensus 333 ~~~~~~~~~~~~~L~~L~l 351 (443)
.. ..+..+++|+.|++
T Consensus 552 ~~---~l~~~lp~L~~L~l 567 (567)
T 1dce_A 552 QE---RLAEMLPSVSSILT 567 (567)
T ss_dssp TT---HHHHHCTTCSEEEC
T ss_pred HH---HHHHHCcccCccCC
Confidence 21 23445677777753
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=99.76 E-value=6.6e-20 Score=189.77 Aligned_cols=260 Identities=19% Similarity=0.151 Sum_probs=120.5
Q ss_pred CCHHHHHHHHHHHHhCC-CCCCCCCCCCC-CCCCCCccceeeCCCCCcEEEEEcCCCCCcccccccccCCCCCCEE----
Q 040495 30 SNETDRLALLAIKLQLH-DPLGVTSSWNN-SMSLCQWTGVTCGRRHQRVTRLDLRNQSIGGPLSPYVGNLSFLRYI---- 103 (443)
Q Consensus 30 ~~~~~~~~l~~~~~~~~-~~~~~~~~w~~-~~~~c~w~gv~c~~~~~~v~~L~l~~~~~~~~~~~~~~~l~~L~~L---- 103 (443)
..+.++.+++++..... ..+.....|.. ....+.|.+..+.. .+++.|++.++.+... +..+.....|+.+
T Consensus 129 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--~~~~~l~L~~n~~~~~-~~~~l~~l~Ls~~~i~~ 205 (727)
T 4b8c_D 129 LVDCTKQALMEMADTLTDSKTAKKQQPTGDSTPSGTATNSAVST--PLTPKIELFANGKDEA-NQALLQHKKLSQYSIDE 205 (727)
T ss_dssp ---CCCHHHHHHHHHHHHHHTTC---------------------------------------------------------
T ss_pred ccccchhhhhhhhhhcccccCcccCCCcCCCCccccCCCceecC--CccceEEeeCCCCCcc-hhhHhhcCccCcccccC
Confidence 34567788888887664 22223345643 23456787776654 5788999988877653 3222222222222
Q ss_pred -eCCCCcCCCCCchhhcCCCccCeEEccCCCCCCCCChhhhcCCCCceeeccCCcccccCCccccCCcCccEeeeecccc
Q 040495 104 -NLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSVDTNYLVGEIPSAIGSLFKLERLFIFHNHI 182 (443)
Q Consensus 104 -~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l 182 (443)
++..|.+. ..+..+..++.|+.|++++|.+. .+|..+..+++|++|++++|.++ .+|..++.+++|++|++++|.+
T Consensus 206 ~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l 282 (727)
T 4b8c_D 206 DDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRL 282 (727)
T ss_dssp -----------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCC
T ss_pred cccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcC
Confidence 22233333 45677788888888888888887 77777778888888888888888 7888888888888888888888
Q ss_pred CccCCccccCCCCCCEEEccCCcCCcccccccCCCCCCEEEcccccCCCCCCccccCCCC-CcEEEcccCcCcccCChhh
Q 040495 183 TGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLRLLDIAFNHFSGMIPPPIFNISS-LEVISLSENRFTGSLPVDA 261 (443)
Q Consensus 183 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~-L~~L~l~~n~l~~~~~~~~ 261 (443)
+ .+|..++.+++|++|++++|.+...+..++.+++|++|++++|.+++.+|..+..... +..+++++|.+++.+|.
T Consensus 283 ~-~lp~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~-- 359 (727)
T 4b8c_D 283 T-SLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH-- 359 (727)
T ss_dssp S-SCCSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC--
T ss_pred C-ccChhhcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc--
Confidence 8 6788888888888888888887766666778888888888888887776666544321 22356777777766653
Q ss_pred hcCCCCCcEEeCCCC--------cCCccCCccCcCCCCCCEEecccCcCc
Q 040495 262 GVNLPNLRQLSPNGN--------NFTGSIPVSLSNASRLEMIEFSRNQFS 303 (443)
Q Consensus 262 ~~~~~~L~~L~L~~n--------~l~~~~~~~l~~~~~L~~L~l~~n~l~ 303 (443)
.++.|+++.| .+.+..+..+..+..++...++.|-+.
T Consensus 360 -----~l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~ 404 (727)
T 4b8c_D 360 -----ERRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLC 404 (727)
T ss_dssp -----C-----------------------------------------CCC
T ss_pred -----ccceeEeecccccccccCCccccccchhhcccccceeeeeccccc
Confidence 3444555544 223233333444455555555555543
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.76 E-value=6e-18 Score=161.18 Aligned_cols=177 Identities=20% Similarity=0.244 Sum_probs=147.3
Q ss_pred CEEEccCCcCCcccccccCCCCCCEEEcccccCCCCCCcccc-CCCCCcEEEcccCcCcccCChhhhcCCCCCcEEeCCC
Q 040495 197 LAFDVRENILWGRIDSLVQLRNLRLLDIAFNHFSGMIPPPIF-NISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNG 275 (443)
Q Consensus 197 ~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~-~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~ 275 (443)
+.++++++.+...+..+. +.++.|++++|.+++..+..+. .+++|++|++++|.++ .++...+..+++|++|++++
T Consensus 21 ~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~-~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCC-ccChhhccCCCCCCEEECCC
Confidence 678999988887664443 4689999999999987777777 8999999999999998 55554445899999999999
Q ss_pred CcCCccCCccCcCCCCCCEEecccCcCccccchhhhCCCCCCEEEccCCCCcccCCCchhhHhhh---cCCCCCCEEEcc
Q 040495 276 NNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLL---ANCSKLERLYFN 352 (443)
Q Consensus 276 n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~---~~~~~L~~L~l~ 352 (443)
|++++..+..|..+++|++|++++|++++..+..|..+++|+.|++++|.++.... ..+ ..+++|+.|+++
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~------~~~~~~~~l~~L~~L~L~ 171 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPV------ELIKDGNKLPKLMLLDLS 171 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCG------GGTC----CTTCCEEECC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCH------HHhcCcccCCcCCEEECC
Confidence 99997777789999999999999999999888999999999999999999998665 334 678999999999
Q ss_pred CCcCcccCC-hhHhhhccC--CCEEeccCCcCeec
Q 040495 353 RNRFQGVLP-QSMANFSST--IKQIAMGRNRISGT 384 (443)
Q Consensus 353 ~n~l~~~~p-~~~~~~~~~--L~~L~L~~n~l~~~ 384 (443)
+|+++ .+| ..+..+ +. ++.|++++|++...
T Consensus 172 ~N~l~-~l~~~~~~~l-~~~~l~~l~l~~N~~~C~ 204 (361)
T 2xot_A 172 SNKLK-KLPLTDLQKL-PAWVKNGLYLHNNPLECD 204 (361)
T ss_dssp SSCCC-CCCHHHHHHS-CHHHHTTEECCSSCEECC
T ss_pred CCCCC-ccCHHHhhhc-cHhhcceEEecCCCccCC
Confidence 99999 555 445543 44 48899999998753
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.76 E-value=3.3e-18 Score=148.44 Aligned_cols=152 Identities=14% Similarity=0.180 Sum_probs=92.8
Q ss_pred CCCCcEEeCCCCcCCccCCccCcCCCCCCEEecccCcCccccchhhhCCCCCCEEEccCCCCcccCCCchhhHhhhcCCC
Q 040495 265 LPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCS 344 (443)
Q Consensus 265 ~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~ 344 (443)
+++|++|++++|+++ .+| .+..+++|++|++++|.++. +..+..+++|++|++++|.+++..+ ..+..++
T Consensus 43 l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~------~~l~~l~ 112 (197)
T 4ezg_A 43 MNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKI------PNLSGLT 112 (197)
T ss_dssp HHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGS------CCCTTCT
T ss_pred cCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccC------hhhcCCC
Confidence 445555555555555 333 35555566666666664432 2345566666666666666665444 3355666
Q ss_pred CCCEEEccCCcCcccCChhHhhhccCCCEEeccCCc-CeecCchhhhcCCCCCeEeCcCCcCcccCchhhcCCCCCCEEE
Q 040495 345 KLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNR-ISGTIPPGIRSHANLNWLTMDSNLFTGTIPPVIGELKNLQLLD 423 (443)
Q Consensus 345 ~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~-l~~~~p~~l~~~~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~ 423 (443)
+|++|++++|++++..|..+..+ ++|+.|++++|+ ++ .+| .+..+++|++|++++|.+++ ++ .+..+++|++|+
T Consensus 113 ~L~~L~Ls~n~i~~~~~~~l~~l-~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~ 187 (197)
T 4ezg_A 113 SLTLLDISHSAHDDSILTKINTL-PKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLY 187 (197)
T ss_dssp TCCEEECCSSBCBGGGHHHHTTC-SSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEE
T ss_pred CCCEEEecCCccCcHhHHHHhhC-CCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEE
Confidence 77777777777766566666553 677777777776 44 455 56777777777777777773 44 567777788888
Q ss_pred ccCCcCcc
Q 040495 424 LGGNFLQG 431 (443)
Q Consensus 424 l~~n~l~~ 431 (443)
+++|++.+
T Consensus 188 l~~N~i~~ 195 (197)
T 4ezg_A 188 AFSQTIGG 195 (197)
T ss_dssp ECBC----
T ss_pred eeCcccCC
Confidence 88887753
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.76 E-value=4.2e-18 Score=147.84 Aligned_cols=152 Identities=21% Similarity=0.228 Sum_probs=85.6
Q ss_pred cCCCCCCEEeCCCCcCCCCCchhhcCCCccCeEEccCCCCCCCCChhhhcCCCCceeeccCCcccccCCccccCCcCccE
Q 040495 95 GNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSVDTNYLVGEIPSAIGSLFKLER 174 (443)
Q Consensus 95 ~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~ 174 (443)
..+++|++|++++|.++ .+| .+..+++|++|++++|.++ .+..+..+++|++|++++|.+++..|..++.+++|++
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 44556666666666665 444 4666666666666666443 2335566666666666666666555566666666666
Q ss_pred eeeeccccCccCCccccCCCCCCEEEccCCc-CCcccccccCCCCCCEEEcccccCCCCCCccccCCCCCcEEEcccCcC
Q 040495 175 LFIFHNHITGQLPASIGNLSSLLAFDVRENI-LWGRIDSLVQLRNLRLLDIAFNHFSGMIPPPIFNISSLEVISLSENRF 253 (443)
Q Consensus 175 L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l 253 (443)
|++++|.+++..+..+..+++|++|++++|. +.. .+.+..+++|++|++++|.+++ ++ .+..+++|++|++++|.+
T Consensus 117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~-~~~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAITD-IMPLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCC-CGGGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC--
T ss_pred EEecCCccCcHhHHHHhhCCCCCEEEccCCCCccc-cHhhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCccc
Confidence 6666666665555555566666666665554 322 2344555555555555555543 22 344455555555555544
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=2.3e-20 Score=187.49 Aligned_cols=204 Identities=20% Similarity=0.203 Sum_probs=149.6
Q ss_pred cCCCCceeeccCCcccccCCccccCCcCccEeeeeccc-------------cCccCCccccCCCCCCEEE-ccCCcCCcc
Q 040495 144 RRSNLIELSVDTNYLVGEIPSAIGSLFKLERLFIFHNH-------------ITGQLPASIGNLSSLLAFD-VRENILWGR 209 (443)
Q Consensus 144 ~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~-------------l~~~~~~~l~~l~~L~~L~-l~~n~l~~~ 209 (443)
.+++|+.|++++|.++ .+|..++.+++|+.|++++|. ..+..|..++.+++|+.|+ ++.|.+
T Consensus 347 ~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~--- 422 (567)
T 1dce_A 347 TDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYL--- 422 (567)
T ss_dssp TTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHH---
T ss_pred cCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhccc---
Confidence 3455555555555554 455555555555555554432 3445556666666666666 443322
Q ss_pred cccccCCCCCCEEEcccccCCCCCCccccCCCCCcEEEcccCcCcccCChhhhcCCCCCcEEeCCCCcCCccCCccCcCC
Q 040495 210 IDSLVQLRNLRLLDIAFNHFSGMIPPPIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNA 289 (443)
Q Consensus 210 ~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 289 (443)
.+|+.+.+++|.+... +. ..|+.|++++|.++ .+|. +. .+++|+.|++++|.++ .+|..++.+
T Consensus 423 -------~~L~~l~l~~n~i~~l-~~-----~~L~~L~Ls~n~l~-~lp~-~~-~l~~L~~L~Ls~N~l~-~lp~~~~~l 485 (567)
T 1dce_A 423 -------DDLRSKFLLENSVLKM-EY-----ADVRVLHLAHKDLT-VLCH-LE-QLLLVTHLDLSHNRLR-ALPPALAAL 485 (567)
T ss_dssp -------HHHHHHHHHHHHHHHH-HH-----TTCSEEECTTSCCS-SCCC-GG-GGTTCCEEECCSSCCC-CCCGGGGGC
T ss_pred -------chhhhhhhhccccccc-Cc-----cCceEEEecCCCCC-CCcC-cc-ccccCcEeecCccccc-ccchhhhcC
Confidence 2344455666665532 11 25899999999998 5786 54 8999999999999999 889999999
Q ss_pred CCCCEEecccCcCccccchhhhCCCCCCEEEccCCCCcccC-CCchhhHhhhcCCCCCCEEEccCCcCcccCCh--hHhh
Q 040495 290 SRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLGTRT-ANELDFINLLANCSKLERLYFNRNRFQGVLPQ--SMAN 366 (443)
Q Consensus 290 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~--~~~~ 366 (443)
++|+.|++++|++++ +| .++.+++|+.|++++|.+++.. | ..+..+++|+.|++++|++++..|. .+..
T Consensus 486 ~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p------~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~ 557 (567)
T 1dce_A 486 RCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAI------QPLVSCPRLVLLNLQGNSLCQEEGIQERLAE 557 (567)
T ss_dssp TTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTT------GGGGGCTTCCEEECTTSGGGGSSSCTTHHHH
T ss_pred CCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCc------HHHhcCCCCCEEEecCCcCCCCccHHHHHHH
Confidence 999999999999997 56 7999999999999999999986 6 6788999999999999999966553 2333
Q ss_pred hccCCCEEec
Q 040495 367 FSSTIKQIAM 376 (443)
Q Consensus 367 ~~~~L~~L~L 376 (443)
..++|+.|++
T Consensus 558 ~lp~L~~L~l 567 (567)
T 1dce_A 558 MLPSVSSILT 567 (567)
T ss_dssp HCTTCSEEEC
T ss_pred HCcccCccCC
Confidence 3588999875
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.74 E-value=6.5e-18 Score=153.44 Aligned_cols=170 Identities=19% Similarity=0.293 Sum_probs=112.7
Q ss_pred CCCCCEEEcccccCCCCCCccccCCCCCcEEEcccCcCcccCChhhhcCCCCCcEEeCCCCcCCccCCccCcCCCCCCEE
Q 040495 216 LRNLRLLDIAFNHFSGMIPPPIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMI 295 (443)
Q Consensus 216 l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L 295 (443)
+.+++.++++++.+.+.. .+..+++|++|++++|.++ .++ .+. .+++|++|++++|++++..+ +..+++|++|
T Consensus 18 l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~-~l~-~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L 90 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ-SLA-GMQ-FFTNLKELHLSHNQISDLSP--LKDLTKLEEL 90 (263)
T ss_dssp HHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCC-CCT-TGG-GCTTCCEEECCSSCCCCCGG--GTTCSSCCEE
T ss_pred HHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcc-cch-HHh-hCCCCCEEECCCCccCCChh--hccCCCCCEE
Confidence 345566667777666332 4566777888888887776 555 333 57777888887777774433 7777777777
Q ss_pred ecccCcCccccchhhhCCCCCCEEEccCCCCcccCCCchhhHhhhcCCCCCCEEEccCCcCcccCChhHhhhccCCCEEe
Q 040495 296 EFSRNQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIA 375 (443)
Q Consensus 296 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~ 375 (443)
++++|++++. +. +.. ++|+.|++++|.+++.. .+..+++|++|++++|++++ ++ .+.. .++|+.|+
T Consensus 91 ~L~~N~l~~l-~~-~~~-~~L~~L~L~~N~l~~~~--------~l~~l~~L~~L~Ls~N~i~~-~~-~l~~-l~~L~~L~ 156 (263)
T 1xeu_A 91 SVNRNRLKNL-NG-IPS-ACLSRLFLDNNELRDTD--------SLIHLKNLEILSIRNNKLKS-IV-MLGF-LSKLEVLD 156 (263)
T ss_dssp ECCSSCCSCC-TT-CCC-SSCCEEECCSSCCSBSG--------GGTTCTTCCEEECTTSCCCB-CG-GGGG-CTTCCEEE
T ss_pred ECCCCccCCc-Cc-ccc-CcccEEEccCCccCCCh--------hhcCcccccEEECCCCcCCC-Ch-HHcc-CCCCCEEE
Confidence 7777777753 22 222 77777777777776642 26677777777777777774 33 3444 36777777
Q ss_pred ccCCcCeecCchhhhcCCCCCeEeCcCCcCccc
Q 040495 376 MGRNRISGTIPPGIRSHANLNWLTMDSNLFTGT 408 (443)
Q Consensus 376 L~~n~l~~~~p~~l~~~~~L~~L~L~~n~~~~~ 408 (443)
+++|++++. ..+..+++|+.|++++|.+++.
T Consensus 157 L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 157 LHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp CTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred CCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 777777754 5566777777777777777643
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.9e-18 Score=178.81 Aligned_cols=194 Identities=17% Similarity=0.185 Sum_probs=124.3
Q ss_pred EEcccccCCCCCCccccCCCCCcEEEcccCcCcccCChhhhcCCCCCcEEeCCCCcCCccCCccCcCCCCCCEEecccCc
Q 040495 222 LDIAFNHFSGMIPPPIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQ 301 (443)
Q Consensus 222 L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~ 301 (443)
+++..|.+. ..+..+..++.|+.|+|++|.+. .+|..++ .+++|++|+|++|.++ .+|..+..+++|++|+|++|.
T Consensus 206 ~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~-~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~ 281 (727)
T 4b8c_D 206 DDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIF-KYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNR 281 (727)
T ss_dssp -----------------CCCCCCEEECTTSCCS-CCCGGGG-GCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSC
T ss_pred cccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhc-CCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCc
Confidence 344444444 45677888999999999999998 8888888 7999999999999999 889889999999999999999
Q ss_pred CccccchhhhCCCCCCEEEccCCCCcccCCCchhhHhhhcCCCCCCEEEccCCcCcccCChhHhhhccCCCEEeccCCcC
Q 040495 302 FSGRVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNRI 381 (443)
Q Consensus 302 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l 381 (443)
++ .+|..++.+++|++|+|++|.++.. | ..+..+++|++|+|++|.+++.+|..+.........+++++|.+
T Consensus 282 l~-~lp~~~~~l~~L~~L~L~~N~l~~l-p------~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l 353 (727)
T 4b8c_D 282 LT-SLPAELGSCFQLKYFYFFDNMVTTL-P------WEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRP 353 (727)
T ss_dssp CS-SCCSSGGGGTTCSEEECCSSCCCCC-C------SSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred CC-ccChhhcCCCCCCEEECCCCCCCcc-C------hhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcc
Confidence 99 6788899999999999999999744 4 34889999999999999999888887765433344578999999
Q ss_pred eecCchhhhcCCCCCeEeCcCC--------cCcccCchhhcCCCCCCEEEccCCcCcccC
Q 040495 382 SGTIPPGIRSHANLNWLTMDSN--------LFTGTIPPVIGELKNLQLLDLGGNFLQGSI 433 (443)
Q Consensus 382 ~~~~p~~l~~~~~L~~L~L~~n--------~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~ 433 (443)
+|.+|.. |+.|+++.| .+.+..+..+..+..++...+++|-+.+..
T Consensus 354 ~~~~p~~------l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~~~~ 407 (727)
T 4b8c_D 354 EIPLPHE------RRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLCQHY 407 (727)
T ss_dssp CCCCCCC-----------------------------------------------CCCGGG
T ss_pred cCcCccc------cceeEeecccccccccCCccccccchhhcccccceeeeecccccccc
Confidence 9988864 455667666 333344445566677778888888876433
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.71 E-value=2.2e-17 Score=149.97 Aligned_cols=149 Identities=26% Similarity=0.288 Sum_probs=69.9
Q ss_pred ccCCCCCCEEeCCCCcCCCCCchhhcCCCccCeEEccCCCCCCCCChhhhcCCCCceeeccCCcccccCCccccCCcCcc
Q 040495 94 VGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSVDTNYLVGEIPSAIGSLFKLE 173 (443)
Q Consensus 94 ~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~ 173 (443)
+..+++|++|++++|.++ .++ .+..+++|++|++++|.+++..+ +..+++|++|++++|++++ +|.. .. ++|+
T Consensus 37 ~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~-l~~~-~~-~~L~ 109 (263)
T 1xeu_A 37 QKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKN-LNGI-PS-ACLS 109 (263)
T ss_dssp HHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSC-CTTC-CC-SSCC
T ss_pred hhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccCC-cCcc-cc-Cccc
Confidence 445555555555555554 233 35555555555555555553222 5555555555555555542 2221 11 4555
Q ss_pred EeeeeccccCccCCccccCCCCCCEEEccCCcCCcccccccCCCCCCEEEcccccCCCCCCccccCCCCCcEEEcccCcC
Q 040495 174 RLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLRLLDIAFNHFSGMIPPPIFNISSLEVISLSENRF 253 (443)
Q Consensus 174 ~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l 253 (443)
+|++++|.+++. ..+..+++|++|++++|.+++. +.+..+++|++|++++|.+.+. ..+..+++|+.|++++|.+
T Consensus 110 ~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~ 184 (263)
T 1xeu_A 110 RLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-VMLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKC 184 (263)
T ss_dssp EEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-GGGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEE
T ss_pred EEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-hHHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcc
Confidence 555555555431 2344444455555444444432 2334444444444444444433 3334444444444444443
Q ss_pred c
Q 040495 254 T 254 (443)
Q Consensus 254 ~ 254 (443)
+
T Consensus 185 ~ 185 (263)
T 1xeu_A 185 V 185 (263)
T ss_dssp E
T ss_pred c
Confidence 3
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.70 E-value=7.5e-18 Score=158.45 Aligned_cols=102 Identities=14% Similarity=0.136 Sum_probs=57.0
Q ss_pred CCCCCEEEccCCCCcccCCCchhhHhhhcCCCCCCEEEccCCcCcccCChhHhhhccCCC-EEeccCCcCeecCchhhhc
Q 040495 313 LKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIK-QIAMGRNRISGTIPPGIRS 391 (443)
Q Consensus 313 l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~-~L~L~~n~l~~~~p~~l~~ 391 (443)
+++|+.+++++|+++.... ..|.+|.+|+++++.+| ++ .++...+..+++|+ .+++.+ .++..-+..|.+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~------~aF~~~~~L~~l~l~~n-i~-~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~ 295 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPD------FTFAQKKYLLKIKLPHN-LK-TIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMG 295 (329)
T ss_dssp CTTCCEEECTTBCCCEECT------TTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCEEEEECT-TCCEECTTTTTT
T ss_pred cCCCeEEECCCCCcceecH------hhhhCCCCCCEEECCcc-cc-eehHHHhhCChhccEEEEEcc-cceEEchhhhhC
Confidence 5555555555555555444 44555666666666555 44 34433333345566 666655 454344456666
Q ss_pred CCCCCeEeCcCCcCcccCchhhcCCCCCCEEE
Q 040495 392 HANLNWLTMDSNLFTGTIPPVIGELKNLQLLD 423 (443)
Q Consensus 392 ~~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~ 423 (443)
|++|+.+++++|.++..-+.+|.++++|+.++
T Consensus 296 c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 296 CDNLRYVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp CTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred CccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence 66666666666666633344666666666665
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
Probab=99.69 E-value=2.3e-16 Score=133.10 Aligned_cols=137 Identities=19% Similarity=0.192 Sum_probs=93.1
Q ss_pred CCCCEEecccCcCc-cccchhhhCCCCCCEEEccCCCCcccCCCchhhHhhhcCCCCCCEEEccCCcCcccCChhHhhhc
Q 040495 290 SRLEMIEFSRNQFS-GRVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFS 368 (443)
Q Consensus 290 ~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~ 368 (443)
++|++|++++|.++ +.+|..+..+++|++|++++|.+++. . .+..+++|++|++++|++++.+|..+..+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~-------~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l- 94 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-S-------NLPKLPKLKKLELSENRIFGGLDMLAEKL- 94 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-S-------SCCCCSSCCEEEEESCCCCSCCCHHHHHC-
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-h-------hhccCCCCCEEECcCCcCchHHHHHHhhC-
Confidence 45555555555555 44455555566666666666665554 1 25667777777777777776566655553
Q ss_pred cCCCEEeccCCcCeec-CchhhhcCCCCCeEeCcCCcCcccCc---hhhcCCCCCCEEEccCCcCcccCCcc
Q 040495 369 STIKQIAMGRNRISGT-IPPGIRSHANLNWLTMDSNLFTGTIP---PVIGELKNLQLLDLGGNFLQGSIPSS 436 (443)
Q Consensus 369 ~~L~~L~L~~n~l~~~-~p~~l~~~~~L~~L~L~~n~~~~~~p---~~~~~l~~L~~L~l~~n~l~~~~p~~ 436 (443)
++|+.|++++|++++. .+..+..+++|+.|++++|.+++..+ ..+..+++|++|++++|.+. ++|++
T Consensus 95 ~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~~ 165 (168)
T 2ell_A 95 PNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ-EAPDS 165 (168)
T ss_dssp TTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC-BCCSS
T ss_pred CCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh-hcccc
Confidence 7788888888888753 22677888888888888888884443 37788888888888888876 66654
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
Probab=99.68 E-value=2.8e-16 Score=135.61 Aligned_cols=132 Identities=20% Similarity=0.289 Sum_probs=109.0
Q ss_pred cEEeCCCCcCCccCCccCcCCCCCCEEecccCcCccccch-hhhCCCCCCEEEccCCCCcccCCCchhhHhhhcCCCCCC
Q 040495 269 RQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSV-DFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLE 347 (443)
Q Consensus 269 ~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~L~ 347 (443)
+.+++++|+++ .+|..+. .++++|++++|++++..+. .+..+++|++|++++|.+++..+ ..+.++++|+
T Consensus 11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~------~~~~~l~~L~ 81 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEP------NAFEGASHIQ 81 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCT------TTTTTCTTCC
T ss_pred CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCH------hHcCCcccCC
Confidence 68899999986 6776554 3899999999999877664 48889999999999999988877 5688888999
Q ss_pred EEEccCCcCcccCChhHhhhccCCCEEeccCCcCeecCchhhhcCCCCCeEeCcCCcCcccCc
Q 040495 348 RLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNRISGTIPPGIRSHANLNWLTMDSNLFTGTIP 410 (443)
Q Consensus 348 ~L~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~n~~~~~~p 410 (443)
+|++++|++++..+..+..+ ++|+.|++++|++++..|..+..+++|++|++++|++.+..+
T Consensus 82 ~L~Ls~N~l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 82 ELQLGENKIKEISNKMFLGL-HQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp EEECCSCCCCEECSSSSTTC-TTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred EEECCCCcCCccCHHHhcCC-CCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 99999999987666666664 789999999999998888888888899999999998886654
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
Probab=99.67 E-value=4.1e-16 Score=134.54 Aligned_cols=132 Identities=20% Similarity=0.211 Sum_probs=71.5
Q ss_pred CEEEcccccCCCCCCccccCCCCCcEEEcccCcCcccCChhhhcCCCCCcEEeCCCCcCCccCCccCcCCCCCCEEeccc
Q 040495 220 RLLDIAFNHFSGMIPPPIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSR 299 (443)
Q Consensus 220 ~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~ 299 (443)
+.++++++.+. .+|..+.. ++++|++++|.+++..+...+..+++|++|++++|++++..|..+..+++|++|++++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 44555555553 34443322 5556666666555322222223555666666666666555555555666666666666
Q ss_pred CcCccccchhhhCCCCCCEEEccCCCCcccCCCchhhHhhhcCCCCCCEEEccCCcCcccC
Q 040495 300 NQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVL 360 (443)
Q Consensus 300 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 360 (443)
|++++..+..|..+++|++|++++|.+++..+ ..+..+++|++|++++|++.+..
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~------~~~~~l~~L~~L~L~~N~l~c~c 142 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMP------GSFEHLNSLTSLNLASNPFNCNC 142 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECT------TSSTTCTTCCEEECTTCCBCCSG
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCH------HHhhcCCCCCEEEeCCCCccCcC
Confidence 66665555555555666666666666555544 34455555666666666555443
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.66 E-value=2.1e-16 Score=148.51 Aligned_cols=281 Identities=12% Similarity=0.089 Sum_probs=171.2
Q ss_pred CcEEEEEcCCCCCcccccccccC-CCCCCEEeCCCCcCC--CCCchhhcCCCccCeEEccCCCCCCCCChhhhc------
Q 040495 74 QRVTRLDLRNQSIGGPLSPYVGN-LSFLRYINLANNGFL--GEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSR------ 144 (443)
Q Consensus 74 ~~v~~L~l~~~~~~~~~~~~~~~-l~~L~~L~L~~n~~~--~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~------ 144 (443)
.++++|.++++ +.+.-...+.. +++|++|||++|.+. ..... .++.++.+.+..+.+. +..|.+
T Consensus 25 ~~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~---~~~~~~~~~~~~~~I~---~~aF~~~~~~~~ 97 (329)
T 3sb4_A 25 NSITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAG---TYPNGKFYIYMANFVP---AYAFSNVVNGVT 97 (329)
T ss_dssp HHCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSS---SSGGGCCEEECTTEEC---TTTTEEEETTEE
T ss_pred CceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcceeEEecCccc---cccccccccccccccC---HHHhcccccccc
Confidence 35677777653 11111122333 788999999999887 21111 2222444555554332 344555
Q ss_pred --CCCCceeeccCCcccccCCccccCCcCccEeeeeccccCccCCccccCCCCCCEEEccCCcC----Cccc-ccccCCC
Q 040495 145 --RSNLIELSVDTNYLVGEIPSAIGSLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENIL----WGRI-DSLVQLR 217 (443)
Q Consensus 145 --l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l----~~~~-~~l~~l~ 217 (443)
+++|+.+++.. .++..-+.+|.+|++|+.+++.+|.+....+..|..+.++..+....... .... ..+..+.
T Consensus 98 ~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~ 176 (329)
T 3sb4_A 98 KGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGE 176 (329)
T ss_dssp EECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESC
T ss_pred cccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccc
Confidence 88899988888 77755566788888999999988888766667777777777776655321 1111 3344555
Q ss_pred CCC-EEEcccccCCCCCCccc----cCCCCCcEEEcccCcCcccCChhhhcCCCCCcEEeCCCCcCCccCCccCcCCCCC
Q 040495 218 NLR-LLDIAFNHFSGMIPPPI----FNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRL 292 (443)
Q Consensus 218 ~L~-~L~l~~n~~~~~~~~~l----~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L 292 (443)
.|+ .+.+.... .++..+ ....+++.+.+.++-.. .....+...+++|+++++++|+++...+..|.++++|
T Consensus 177 ~L~~~i~~~~~~---~l~~~~~~~~~~~~~~~~l~~~~~l~~-~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L 252 (329)
T 3sb4_A 177 PLETTIQVGAMG---KLEDEIMKAGLQPRDINFLTIEGKLDN-ADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYL 252 (329)
T ss_dssp CCEEEEEECTTC---CHHHHHHHTTCCGGGCSEEEEEECCCH-HHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTC
T ss_pred ccceeEEecCCC---cHHHHHhhcccCccccceEEEeeeecH-HHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCC
Confidence 555 34433211 111111 12345566666554221 1111222236788888888877775556678888888
Q ss_pred CEEecccCcCccccchhhhCCCCCC-EEEccCCCCcccCCCchhhHhhhcCCCCCCEEEccCCcCcccCChhHhhhccCC
Q 040495 293 EMIEFSRNQFSGRVSVDFSRLKNLS-FLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTI 371 (443)
Q Consensus 293 ~~L~l~~n~l~~~~~~~~~~l~~L~-~L~l~~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L 371 (443)
+++++.+| +....+..|.++++|+ .+++.. .++...+ .+|.+|++|+.+++++|.++ .++...+.-+++|
T Consensus 253 ~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~------~aF~~c~~L~~l~l~~n~i~-~I~~~aF~~~~~L 323 (329)
T 3sb4_A 253 LKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEF------GAFMGCDNLRYVLATGDKIT-TLGDELFGNGVPS 323 (329)
T ss_dssp CEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECT------TTTTTCTTEEEEEECSSCCC-EECTTTTCTTCCC
T ss_pred CEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEch------hhhhCCccCCEEEeCCCccC-ccchhhhcCCcch
Confidence 88888776 6666666788888888 888877 6666555 56788888888888888887 4444333335777
Q ss_pred CEEe
Q 040495 372 KQIA 375 (443)
Q Consensus 372 ~~L~ 375 (443)
+.++
T Consensus 324 ~~ly 327 (329)
T 3sb4_A 324 KLIY 327 (329)
T ss_dssp CEEE
T ss_pred hhhc
Confidence 7765
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
Probab=99.66 E-value=4.3e-16 Score=128.63 Aligned_cols=128 Identities=20% Similarity=0.204 Sum_probs=83.5
Q ss_pred CCCCEEecccCcCc-cccchhhhCCCCCCEEEccCCCCcccCCCchhhHhhhcCCCCCCEEEccCCcCcccCChhHhhhc
Q 040495 290 SRLEMIEFSRNQFS-GRVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFS 368 (443)
Q Consensus 290 ~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~ 368 (443)
++++.|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--------~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l- 87 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--------ANLPKLNKLKKLELSDNRVSGGLEVLAEKC- 87 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--------TTCCCCTTCCEEECCSSCCCSCTHHHHHHC-
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--------hhhhcCCCCCEEECCCCcccchHHHHhhhC-
Confidence 44555555555555 44555555556666666666655554 125566777777777777775566655543
Q ss_pred cCCCEEeccCCcCeec-CchhhhcCCCCCeEeCcCCcCcccCc---hhhcCCCCCCEEEccC
Q 040495 369 STIKQIAMGRNRISGT-IPPGIRSHANLNWLTMDSNLFTGTIP---PVIGELKNLQLLDLGG 426 (443)
Q Consensus 369 ~~L~~L~L~~n~l~~~-~p~~l~~~~~L~~L~L~~n~~~~~~p---~~~~~l~~L~~L~l~~ 426 (443)
++|+.|++++|++++. .+..+..+++|++|++++|.+++..+ ..+..+++|++||+++
T Consensus 88 ~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 88 PNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp TTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 6777777777777753 34667778888888888888875444 4677788888887763
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
Probab=99.65 E-value=5.8e-16 Score=130.58 Aligned_cols=136 Identities=13% Similarity=0.165 Sum_probs=94.4
Q ss_pred CCCCcEEeCCCCcCC-ccCCccCcCCCCCCEEecccCcCccccchhhhCCCCCCEEEccCCCCcccCCCchhhHhhhcCC
Q 040495 265 LPNLRQLSPNGNNFT-GSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANC 343 (443)
Q Consensus 265 ~~~L~~L~L~~n~l~-~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~ 343 (443)
.+++++|++++|+++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++..+ ..+..+
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~------~~~~~l 94 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLD------MLAEKL 94 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCC------HHHHHC
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHH------HHHhhC
Confidence 456777777777766 56666667777777777777777755 556777777777777777776554 455567
Q ss_pred CCCCEEEccCCcCcccCC--hhHhhhccCCCEEeccCCcCeecCc---hhhhcCCCCCeEeCcCCcCcccCch
Q 040495 344 SKLERLYFNRNRFQGVLP--QSMANFSSTIKQIAMGRNRISGTIP---PGIRSHANLNWLTMDSNLFTGTIPP 411 (443)
Q Consensus 344 ~~L~~L~l~~n~l~~~~p--~~~~~~~~~L~~L~L~~n~l~~~~p---~~l~~~~~L~~L~L~~n~~~~~~p~ 411 (443)
++|++|++++|++++ +| ..+.. .++|+.|++++|++++..+ ..+..+++|++|++++|.+. .+|+
T Consensus 95 ~~L~~L~Ls~N~l~~-~~~~~~l~~-l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~ 164 (168)
T 2ell_A 95 PNLTHLNLSGNKLKD-ISTLEPLKK-LECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ-EAPD 164 (168)
T ss_dssp TTCCEEECBSSSCCS-SGGGGGGSS-CSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC-BCCS
T ss_pred CCCCEEeccCCccCc-chhHHHHhc-CCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh-hccc
Confidence 777777777777774 33 44444 3678888888888775433 36777888888888888776 4554
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
Probab=99.64 E-value=3.6e-16 Score=129.09 Aligned_cols=127 Identities=24% Similarity=0.275 Sum_probs=101.8
Q ss_pred CcEEEEEcCCCCCc-ccccccccCCCCCCEEeCCCCcCCCCCchhhcCCCccCeEEccCCCCCCCCChhhhcCCCCceee
Q 040495 74 QRVTRLDLRNQSIG-GPLSPYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELS 152 (443)
Q Consensus 74 ~~v~~L~l~~~~~~-~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~ 152 (443)
.+++.|+++++.+. +.+|..+..+++|++|++++|.+++. ..++++++|++|++++|.+++.+|..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 46788899988887 67788788888999999998888755 6688888899999999988876788777888899999
Q ss_pred ccCCccccc-CCccccCCcCccEeeeeccccCccCC---ccccCCCCCCEEEcc
Q 040495 153 VDTNYLVGE-IPSAIGSLFKLERLFIFHNHITGQLP---ASIGNLSSLLAFDVR 202 (443)
Q Consensus 153 l~~n~l~~~-~p~~l~~l~~L~~L~l~~n~l~~~~~---~~l~~l~~L~~L~l~ 202 (443)
+++|.+++. .+..++.+++|++|++++|.+++..+ ..+..+++|++|+++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 988888752 34677888888888888888886544 357777777777764
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.59 E-value=9.9e-15 Score=124.12 Aligned_cols=133 Identities=18% Similarity=0.308 Sum_probs=95.7
Q ss_pred CcEEeCCCCcCCccCCccCcCCCCCCEEecccCcCccccchhhhCCCCCCEEEccCCCCcccCCCchhhHhhhcCCCCCC
Q 040495 268 LRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLE 347 (443)
Q Consensus 268 L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~L~ 347 (443)
.+.+++++++++ .+|..+ .++|++|++++|++++..+..+..+++|++|++++|.+++..+ ..+..+++|+
T Consensus 9 ~~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~------~~~~~l~~L~ 79 (177)
T 2o6r_A 9 GTEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPD------GVFDKLTKLT 79 (177)
T ss_dssp TTEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCT------TTTTTCTTCC
T ss_pred CCEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeCh------hHccCCCccC
Confidence 467888888877 455433 3688888888888887666667788888888888888877665 4567778888
Q ss_pred EEEccCCcCcccCChhHhhhccCCCEEeccCCcCeecCchhhhcCCCCCeEeCcCCcCcccCc
Q 040495 348 RLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNRISGTIPPGIRSHANLNWLTMDSNLFTGTIP 410 (443)
Q Consensus 348 ~L~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~n~~~~~~p 410 (443)
+|++++|++++..+..+.. .++|+.|++++|++++..+..+..+++|++|++++|++.+..|
T Consensus 80 ~L~l~~N~l~~~~~~~~~~-l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 80 ILYLHENKLQSLPNGVFDK-LTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp EEECCSSCCCCCCTTTTTT-CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred EEECCCCCccccCHHHhhC-CcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 8888888887444444444 3678888888888775444445677778888888887776544
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.7e-14 Score=122.63 Aligned_cols=133 Identities=17% Similarity=0.270 Sum_probs=111.1
Q ss_pred CcEEEcccCcCcccCChhhhcCCCCCcEEeCCCCcCCccCCccCcCCCCCCEEecccCcCccccchhhhCCCCCCEEEcc
Q 040495 243 LEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMG 322 (443)
Q Consensus 243 L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 322 (443)
.+.+++++++++ .+|..+ .+++++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|++|+++
T Consensus 9 ~~~l~~~~~~l~-~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 84 (177)
T 2o6r_A 9 GTEIRCNSKGLT-SVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH 84 (177)
T ss_dssp TTEEECCSSCCS-SCCTTC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEEecCCCCc-cCCCCC---CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECC
Confidence 478899999887 777553 4789999999999987666778899999999999999998777778999999999999
Q ss_pred CCCCcccCCCchhhHhhhcCCCCCCEEEccCCcCcccCChhHhhhccCCCEEeccCCcCeecCc
Q 040495 323 INNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNRISGTIP 386 (443)
Q Consensus 323 ~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p 386 (443)
+|.+++..+ ..+..+++|++|++++|+++ .+|.......++|+.|++++|++.+..|
T Consensus 85 ~N~l~~~~~------~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 85 ENKLQSLPN------GVFDKLTQLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp SSCCCCCCT------TTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCCccccCH------HHhhCCcccCEEECcCCcce-EeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 999998776 56788999999999999998 5555543334889999999999987654
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
Probab=99.57 E-value=8.1e-15 Score=124.52 Aligned_cols=130 Identities=19% Similarity=0.219 Sum_probs=61.6
Q ss_pred CCCCCcEEeCCCCcCCccCCccCcCCCCCCEEecccCcCccccchhhhCCCCCCEEEccCCCCcccCCCchhhHhhhcCC
Q 040495 264 NLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANC 343 (443)
Q Consensus 264 ~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~ 343 (443)
++.+|++|++++|+++ .+|......++|+.|++++|.+++. ..+..+++|++|++++|.+++..+ ..+..+
T Consensus 17 ~~~~L~~L~l~~n~l~-~i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~------~~~~~l 87 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGE------GLDQAL 87 (176)
T ss_dssp CTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECS------CHHHHC
T ss_pred CcCCceEEEeeCCCCc-hhHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCc------chhhcC
Confidence 3455555555555555 2333222222555555555555543 234444444555554444444332 223344
Q ss_pred CCCCEEEccCCcCcccCChhHhhhccCCCEEeccCCcCeecCch--hhhcCCCCCeEeCcCCcCcccCchh----hcCCC
Q 040495 344 SKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNRISGTIPP--GIRSHANLNWLTMDSNLFTGTIPPV----IGELK 417 (443)
Q Consensus 344 ~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~--~l~~~~~L~~L~L~~n~~~~~~p~~----~~~l~ 417 (443)
+ +|+.|++++|+++ .+|. .+..+++|+.|++++|.++ .+|.. +..++
T Consensus 88 ~-------------------------~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~ 140 (176)
T 1a9n_A 88 P-------------------------DLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVP 140 (176)
T ss_dssp T-------------------------TCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCT
T ss_pred C-------------------------CCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCC
Confidence 4 4555555555553 3333 4445555555555555554 33432 44555
Q ss_pred CCCEEEccCCcC
Q 040495 418 NLQLLDLGGNFL 429 (443)
Q Consensus 418 ~L~~L~l~~n~l 429 (443)
+|+.||+++|..
T Consensus 141 ~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 141 QVRVLDFQKVKL 152 (176)
T ss_dssp TCSEETTEECCH
T ss_pred ccceeCCCcCCH
Confidence 555555555544
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.57 E-value=2.3e-14 Score=123.56 Aligned_cols=126 Identities=22% Similarity=0.238 Sum_probs=89.9
Q ss_pred EEEcCCCCCcccccccccCCCCCCEEeCCCCcCCCCCchhhcCCCccCeEEccCCCCCCCCChhhhcCCCCceeeccCCc
Q 040495 78 RLDLRNQSIGGPLSPYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSVDTNY 157 (443)
Q Consensus 78 ~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~ 157 (443)
.++++++.+.. +|..+ .++|++|++++|.++ .+|..+.++++|++|++++|.+++..+..|.++++|++|++++|.
T Consensus 14 ~l~~~~~~l~~-ip~~~--~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 14 VVRCSNKGLKV-LPKGI--PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp EEECTTSCCSS-CCSCC--CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEcCCCCCCc-CCCCC--CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence 46666776653 44433 257888888888887 677778888888888888888887666777888888888888888
Q ss_pred ccccCCccccCCcCccEeeeeccccCccCCccccCCCCCCEEEccCCcCC
Q 040495 158 LVGEIPSAIGSLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILW 207 (443)
Q Consensus 158 l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 207 (443)
+++..|..|..+++|++|++++|.++...+..+..+++|++|++++|.+.
T Consensus 90 l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred cCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 87666666777777777777777777544445666666666666665443
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.57 E-value=3.3e-14 Score=122.52 Aligned_cols=126 Identities=21% Similarity=0.280 Sum_probs=66.8
Q ss_pred EEEcccccCCCCCCccccCCCCCcEEEcccCcCcccCChhhhcCCCCCcEEeCCCCcCCccCCccCcCCCCCCEEecccC
Q 040495 221 LLDIAFNHFSGMIPPPIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRN 300 (443)
Q Consensus 221 ~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n 300 (443)
.++++++.+. .+|..+. ++|++|++++|.++ .+|..+. .+++|++|++++|.+++..+..|..+++|++|++++|
T Consensus 14 ~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~-~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 14 VVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELS-NYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp EEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGG-GCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred EEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhh-cccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 4455555544 2333322 34555555555555 4553332 4555555555555555444455555555555555555
Q ss_pred cCccccchhhhCCCCCCEEEccCCCCcccCCCchhhHhhhcCCCCCCEEEccCCcCc
Q 040495 301 QFSGRVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQ 357 (443)
Q Consensus 301 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 357 (443)
++++..+..|..+++|+.|++++|.++...+ ..+..+++|+.|++++|++.
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~------~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPE------GAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCT------TTTTTCTTCCEEECCSSCEE
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeCh------hhhhcCccccEEEeCCCCee
Confidence 5555555555555555555555555554444 33445555555555555554
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
Probab=99.57 E-value=1.4e-13 Score=132.27 Aligned_cols=264 Identities=12% Similarity=0.093 Sum_probs=123.0
Q ss_pred CCCCEEeCCCCcCCCCCchhhcCCCccCeEEccCCCCCCCCChhhhcCCCCceeeccCCcccccCCccccCCcCccEeee
Q 040495 98 SFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSVDTNYLVGEIPSAIGSLFKLERLFI 177 (443)
Q Consensus 98 ~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l 177 (443)
..++.+.+..+ ++..-..+|.++ +|+.+.+..+ ++......|.+ .+|+.+.+.. .+...-+..|.+|.+|+.+++
T Consensus 113 ~~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l 187 (401)
T 4fdw_A 113 KGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADL 187 (401)
T ss_dssp SSCSEEECCTT-CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEEC
T ss_pred CCccEEEECCc-cCEehHhhcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeeec
Confidence 34444444322 332223334443 4555555443 33233334444 2455555543 333233344455555555555
Q ss_pred eccccCccCCccccCCCCCCEEEccCCcCCcccccccCCCCCCEEEcccccCCCCCCccccCCCCCcEEEcccCcCcccC
Q 040495 178 FHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLRLLDIAFNHFSGMIPPPIFNISSLEVISLSENRFTGSL 257 (443)
Q Consensus 178 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 257 (443)
.+|.++......|. +.+ |+.+.+..+ +...-..+|.++++|+.+++.++ ++ .+
T Consensus 188 ~~n~l~~I~~~aF~-~~~-----------------------L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~-~I 240 (401)
T 4fdw_A 188 SKTKITKLPASTFV-YAG-----------------------IEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VS-TI 240 (401)
T ss_dssp TTSCCSEECTTTTT-TCC-----------------------CSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CC-EE
T ss_pred CCCcceEechhhEe-ecc-----------------------cCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-cc-Cc
Confidence 55444422222222 344 444444422 22222334445555555555443 22 34
Q ss_pred ChhhhcCCCCCcEEeCCCCcCCccCCccCcCCCCCCEEecccCcCc-----cccchhhhCCCCCCEEEccCCCCcccCCC
Q 040495 258 PVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFS-----GRVSVDFSRLKNLSFLNMGINNLGTRTAN 332 (443)
Q Consensus 258 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~-----~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 332 (443)
+...+.+ .+|+.+.+. +.++..-...|.+|++|+.+++.++.+. ......|.+|++|+.+++. +.++....
T Consensus 241 ~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~- 316 (401)
T 4fdw_A 241 GQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQ- 316 (401)
T ss_dssp CTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECT-
T ss_pred ccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhh-
Confidence 4444422 455555552 2333333445555666666666555443 2334456666666666665 33444443
Q ss_pred chhhHhhhcCCCCCCEEEccCCcCcccCChhHhhhccCCCEEeccCCcCeecCchhhhcCC-CCCeEeCcCCcC
Q 040495 333 ELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNRISGTIPPGIRSHA-NLNWLTMDSNLF 405 (443)
Q Consensus 333 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~-~L~~L~L~~n~~ 405 (443)
.+|.+|.+|+.+.+.++ ++ .+....+..+ +|+.+++++|.+....+..+..++ +++.+++..+.+
T Consensus 317 -----~aF~~c~~L~~l~lp~~-l~-~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 317 -----GLLGGNRKVTQLTIPAN-VT-QINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESV 382 (401)
T ss_dssp -----TTTTTCCSCCEEEECTT-CC-EECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred -----hhhcCCCCccEEEECcc-cc-EEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence 45666666666666443 44 3333222223 566666666655533334444442 566666665543
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
Probab=99.55 E-value=2.1e-14 Score=121.91 Aligned_cols=136 Identities=14% Similarity=0.116 Sum_probs=108.1
Q ss_pred cccCCCCCcEEEcccCcCcccCChhhhcCCCCCcEEeCCCCcCCccCCccCcCCCCCCEEecccCcCccccchhhhCCCC
Q 040495 236 PIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKN 315 (443)
Q Consensus 236 ~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~ 315 (443)
.+.++++|++|++++|.++ .+|. +....++|++|++++|++++. ..+..+++|++|++++|.+++..+..+..+++
T Consensus 14 ~~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 89 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPD 89 (176)
T ss_dssp EEECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTT
T ss_pred hcCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCC
Confidence 4567889999999999998 6664 442445999999999999964 67899999999999999999876666799999
Q ss_pred CCEEEccCCCCcccCCCchhhHhhhcCCCCCCEEEccCCcCcccCChh----HhhhccCCCEEeccCCcCe
Q 040495 316 LSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQS----MANFSSTIKQIAMGRNRIS 382 (443)
Q Consensus 316 L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~----~~~~~~~L~~L~L~~n~l~ 382 (443)
|++|++++|.++.... ...+..+++|++|++++|+++ .+|.. +.. +++|+.||+++|...
T Consensus 90 L~~L~L~~N~i~~~~~-----~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~-l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 90 LTELILTNNSLVELGD-----LDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYK-VPQVRVLDFQKVKLK 153 (176)
T ss_dssp CCEEECCSCCCCCGGG-----GGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHH-CTTCSEETTEECCHH
T ss_pred CCEEECCCCcCCcchh-----hHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHH-CCccceeCCCcCCHH
Confidence 9999999999965432 135778888999999988887 55654 444 467777777777655
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
Probab=99.54 E-value=4.4e-13 Score=128.76 Aligned_cols=225 Identities=8% Similarity=0.040 Sum_probs=143.6
Q ss_pred ccccCCCCCCEEeCCCCcCCCCCchhhcCCCccCeEEccCCCCCCCCChhhhcCCCCceeeccCCcccccCCccccCCcC
Q 040495 92 PYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSVDTNYLVGEIPSAIGSLFK 171 (443)
Q Consensus 92 ~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~ 171 (443)
.+|.+. +|+.+.+..+ ++..-..+|.++ +|+.+.+.+ .++...+..|.++++|+.+++..|.++......|. +.+
T Consensus 130 ~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~ 204 (401)
T 4fdw_A 130 DAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAG 204 (401)
T ss_dssp TTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCC
T ss_pred hhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecc
Confidence 356664 7999999876 664555667774 799999986 66656678899999999999999998844444555 689
Q ss_pred ccEeeeeccccCccCCccccCCCCCCEEEccCCcCCccc-ccccCCCCCCEEEcccccCCCCCCccccCCCCCcEEEccc
Q 040495 172 LERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRI-DSLVQLRNLRLLDIAFNHFSGMIPPPIFNISSLEVISLSE 250 (443)
Q Consensus 172 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~ 250 (443)
|+.+.+..+ ++..-...|.++++|+.+.+..+ +.... ..+.. .+|+.+.+. +.+...-...|.++++|+.+.+.+
T Consensus 205 L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~ 280 (401)
T 4fdw_A 205 IEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYG 280 (401)
T ss_dssp CSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEES
T ss_pred cCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCC
Confidence 999999854 65455667888889999988765 33222 44444 677777774 334433345666777777777766
Q ss_pred CcCc----ccCChhhhcCCCCCcEEeCCCCcCCccCCccCcCCCCCCEEecccCcCccccchhhhCCCCCCEEEccCCCC
Q 040495 251 NRFT----GSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNL 326 (443)
Q Consensus 251 n~l~----~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 326 (443)
+.+. ..++...+.++++|+.+.+.. .++..-...|.+|++|+.+.+..+ ++......|.++ +|+.+++..|.+
T Consensus 281 ~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~ 357 (401)
T 4fdw_A 281 STFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTP 357 (401)
T ss_dssp SCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSC
T ss_pred ccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCC
Confidence 6543 124444454555666666552 344333445555555555555332 443344445555 555555555544
Q ss_pred cc
Q 040495 327 GT 328 (443)
Q Consensus 327 ~~ 328 (443)
..
T Consensus 358 ~~ 359 (401)
T 4fdw_A 358 PQ 359 (401)
T ss_dssp CB
T ss_pred cc
Confidence 33
|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.53 E-value=5.6e-13 Score=128.33 Aligned_cols=326 Identities=11% Similarity=-0.000 Sum_probs=206.4
Q ss_pred ccccCCCCCCEEeCCCCcCCCCCchhhcCCCccCeEEccCCCCCCCCChhhhcCCCCceeeccCCcccccCCccccCCcC
Q 040495 92 PYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSVDTNYLVGEIPSAIGSLFK 171 (443)
Q Consensus 92 ~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~ 171 (443)
.+|.++.+|+.+.+..+ ++..-..+|.++++|+.+++.++ ++......|.++++|+.+.+..+ +.......|.++..
T Consensus 65 ~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~ 141 (394)
T 4fs7_A 65 AAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDF 141 (394)
T ss_dssp TTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCC
T ss_pred HHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeecccc
Confidence 45777888888888643 55444566788888888888654 44344566777888887766543 33233344555543
Q ss_pred ccEeeeeccccCccCCccccCCCCCCEEEccCCcCCcccccccCCCCCCEEEcccccCCCCCCccccCCCCCcEEEcccC
Q 040495 172 LERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLRLLDIAFNHFSGMIPPPIFNISSLEVISLSEN 251 (443)
Q Consensus 172 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n 251 (443)
++....... .......|.++++|+.+.+..+...-....+..+.+|+.+.+..+ +.......+.++..|+.+.+..+
T Consensus 142 ~~~~~~~~~--~~i~~~aF~~c~~L~~i~l~~~~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~ 218 (394)
T 4fs7_A 142 KEITIPEGV--TVIGDEAFATCESLEYVSLPDSMETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNS 218 (394)
T ss_dssp SEEECCTTC--CEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTT
T ss_pred cccccCccc--cccchhhhcccCCCcEEecCCccceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCC
Confidence 333322221 112334677788888888876543322266777788888877655 33233455667777777776655
Q ss_pred cCcccCChhhhcCCCCCcEEeCCCCcCCccCCccCcCCCCCCEEecccCcCccccchhhhCCCCCCEEEccCCCCcccCC
Q 040495 252 RFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLGTRTA 331 (443)
Q Consensus 252 ~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 331 (443)
... +....+ ....|+.+.+.... +..-...+..+..++.+.+..+... .....|..+..++.+....+.+..
T Consensus 219 ~~~--i~~~~~-~~~~l~~i~ip~~~-~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~~--- 290 (394)
T 4fs7_A 219 LYY--LGDFAL-SKTGVKNIIIPDSF-TELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVPE--- 290 (394)
T ss_dssp CCE--ECTTTT-TTCCCCEEEECTTC-CEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEECT---
T ss_pred ceE--eehhhc-ccCCCceEEECCCc-eecccccccccccceeEEcCCCcce-eeccccccccccceeccCceeecc---
Confidence 332 222233 45678887776432 2233456777888888888766433 445567788888888776553221
Q ss_pred CchhhHhhhcCCCCCCEEEccCCcCcccCChhHhhhccCCCEEeccCCcCeecCchhhhcCCCCCeEeCcCCcCcccCch
Q 040495 332 NELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNRISGTIPPGIRSHANLNWLTMDSNLFTGTIPP 411 (443)
Q Consensus 332 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~n~~~~~~p~ 411 (443)
..+..+.+|+.+.+.++ ++ .++...+..+++|+.+++.++ ++..-...|.+|++|+.+++..+ ++..-..
T Consensus 291 ------~~F~~~~~L~~i~l~~~-i~-~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~ 360 (394)
T 4fs7_A 291 ------KTFYGCSSLTEVKLLDS-VK-FIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGAN 360 (394)
T ss_dssp ------TTTTTCTTCCEEEECTT-CC-EECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTT
T ss_pred ------ccccccccccccccccc-cc-eechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHH
Confidence 45778889999988765 55 454444443688999998754 55445677888999999999776 5533345
Q ss_pred hhcCCCCCCEEEccCCcCcccCCccccCCCCC
Q 040495 412 VIGELKNLQLLDLGGNFLQGSIPSSLGNLTLL 443 (443)
Q Consensus 412 ~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L 443 (443)
+|.++++|+.+++..+ +. .+...|.++++|
T Consensus 361 aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L 390 (394)
T 4fs7_A 361 AFQGCINLKKVELPKR-LE-QYRYDFEDTTKF 390 (394)
T ss_dssp TBTTCTTCCEEEEEGG-GG-GGGGGBCTTCEE
T ss_pred HhhCCCCCCEEEECCC-CE-EhhheecCCCCC
Confidence 7888999999999765 32 344567666543
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
Probab=99.52 E-value=3e-16 Score=136.18 Aligned_cols=152 Identities=23% Similarity=0.324 Sum_probs=111.2
Q ss_pred CCCCcEEeCCCCcCCccCCc------cCcCCCCCCEEecccCcCccccchhhhCCCCCCEEEccCCCCcccCCCchhhHh
Q 040495 265 LPNLRQLSPNGNNFTGSIPV------SLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANELDFIN 338 (443)
Q Consensus 265 ~~~L~~L~L~~n~l~~~~~~------~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~ 338 (443)
...++.++++.+.+.+..|. .+..+++|++|++++|++++ +| .+..+++|++|++++|.++.. + .
T Consensus 17 ~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~~l-~------~ 87 (198)
T 1ds9_A 17 RKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKKI-E------N 87 (198)
T ss_dssp TTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEECSC-S------S
T ss_pred cccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcccc-c------c
Confidence 34555555555555555544 67778888888888888876 45 677888888888888887743 3 3
Q ss_pred hhcCCCCCCEEEccCCcCcccCChhHhhhccCCCEEeccCCcCeecCc-hhhhcCCCCCeEeCcCCcCcccCch------
Q 040495 339 LLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNRISGTIP-PGIRSHANLNWLTMDSNLFTGTIPP------ 411 (443)
Q Consensus 339 ~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p-~~l~~~~~L~~L~L~~n~~~~~~p~------ 411 (443)
.+..+++|++|++++|++++ +| .+..+ ++|+.|++++|++++..+ ..+..+++|++|++++|.+.+..|.
T Consensus 88 ~~~~~~~L~~L~L~~N~l~~-l~-~~~~l-~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~ 164 (198)
T 1ds9_A 88 LDAVADTLEELWISYNQIAS-LS-GIEKL-VNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSE 164 (198)
T ss_dssp HHHHHHHCSEEEEEEEECCC-HH-HHHHH-HHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHH
T ss_pred hhhcCCcCCEEECcCCcCCc-CC-ccccC-CCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHH
Confidence 34556788999999998884 55 45553 789999999999885322 4688889999999999998876654
Q ss_pred ----hhcCCCCCCEEEccCCcCc
Q 040495 412 ----VIGELKNLQLLDLGGNFLQ 430 (443)
Q Consensus 412 ----~~~~l~~L~~L~l~~n~l~ 430 (443)
.+..+++|+.|| +|.++
T Consensus 165 ~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 165 YRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp HHHHHHHHCSSCSEEC--CGGGT
T ss_pred HHHHHHHhCCCcEEEC--CcccC
Confidence 377889999887 66665
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
Probab=99.50 E-value=4.9e-16 Score=134.79 Aligned_cols=137 Identities=23% Similarity=0.292 Sum_probs=117.3
Q ss_pred CcCCCCCCEEecccCcCccccch------hhhCCCCCCEEEccCCCCcccCCCchhhHhhhcCCCCCCEEEccCCcCccc
Q 040495 286 LSNASRLEMIEFSRNQFSGRVSV------DFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGV 359 (443)
Q Consensus 286 l~~~~~L~~L~l~~n~l~~~~~~------~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 359 (443)
+.....++.++++.+.++|..|. .+..+++|++|++++|.+++.. .+..+++|++|++++|+++ .
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~--------~~~~l~~L~~L~l~~n~l~-~ 84 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS--------SLSGMENLRILSLGRNLIK-K 84 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCC--------CHHHHTTCCEEEEEEEEEC-S
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcccc--------ccccCCCCCEEECCCCCcc-c
Confidence 45566788888888888887776 8999999999999999998843 3677899999999999999 7
Q ss_pred CChhHhhhccCCCEEeccCCcCeecCchhhhcCCCCCeEeCcCCcCcccCc--hhhcCCCCCCEEEccCCcCcccCCc
Q 040495 360 LPQSMANFSSTIKQIAMGRNRISGTIPPGIRSHANLNWLTMDSNLFTGTIP--PVIGELKNLQLLDLGGNFLQGSIPS 435 (443)
Q Consensus 360 ~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~n~~~~~~p--~~~~~l~~L~~L~l~~n~l~~~~p~ 435 (443)
+|..+..+ ++|+.|++++|++++ +| .+..+++|++|++++|.+++ ++ ..+..+++|++|++++|++++.+|.
T Consensus 85 l~~~~~~~-~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~l~~~~~~ 158 (198)
T 1ds9_A 85 IENLDAVA-DTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITN-WGEIDKLAALDKLEDLLLAGNPLYNDYKE 158 (198)
T ss_dssp CSSHHHHH-HHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCC-HHHHHHHTTTTTCSEEEECSCHHHHHHHT
T ss_pred ccchhhcC-CcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCc-hhHHHHHhcCCCCCEEEecCCcccccccc
Confidence 88766663 789999999999996 55 68899999999999999984 33 4789999999999999999888775
|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.48 E-value=3.2e-12 Score=123.04 Aligned_cols=323 Identities=10% Similarity=0.026 Sum_probs=223.4
Q ss_pred CcEEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCCCCCchhhcCCCccCeEEccCCCCCCCCChhhhcCCCCceeec
Q 040495 74 QRVTRLDLRNQSIGGPLSPYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSV 153 (443)
Q Consensus 74 ~~v~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l 153 (443)
..++++.+..+ ++..-..+|.++++|+.+++..+ ++..-..+|.++++|+.+.+..+ +.......|.++..++....
T Consensus 71 ~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~~~~~~~ 147 (394)
T 4fs7_A 71 RKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDFKEITIP 147 (394)
T ss_dssp TTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCCSEEECC
T ss_pred CCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeecccccccccC
Confidence 46889998743 55444567899999999999765 55344567888999998887654 33344555666554444333
Q ss_pred cCCcccccCCccccCCcCccEeeeeccccCccCCccccCCCCCCEEEccCCcCCcccccccCCCCCCEEEcccccCCCCC
Q 040495 154 DTNYLVGEIPSAIGSLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLRLLDIAFNHFSGMI 233 (443)
Q Consensus 154 ~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~~~~~~ 233 (443)
.... ......|.++.+|+.+.+.++... .....+.++.+|+.+.+..+.-.-....+..+..|+.+.+..+... +
T Consensus 148 ~~~~--~i~~~aF~~c~~L~~i~l~~~~~~-I~~~~F~~c~~L~~i~l~~~~~~I~~~~F~~~~~L~~i~~~~~~~~--i 222 (394)
T 4fs7_A 148 EGVT--VIGDEAFATCESLEYVSLPDSMET-LHNGLFSGCGKLKSIKLPRNLKIIRDYCFAECILLENMEFPNSLYY--L 222 (394)
T ss_dssp TTCC--EECTTTTTTCTTCCEEECCTTCCE-ECTTTTTTCTTCCBCCCCTTCCEECTTTTTTCTTCCBCCCCTTCCE--E
T ss_pred cccc--ccchhhhcccCCCcEEecCCccce-eccccccCCCCceEEEcCCCceEeCchhhccccccceeecCCCceE--e
Confidence 3322 233456888999999998765432 4455678889999998877622222266777888888877655432 2
Q ss_pred CccccCCCCCcEEEcccCcCcccCChhhhcCCCCCcEEeCCCCcCCccCCccCcCCCCCCEEecccCcCccccchhhhCC
Q 040495 234 PPPIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRL 313 (443)
Q Consensus 234 ~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l 313 (443)
........+|+.+.+.... + .+....+..+..++.+.+..+... .....+..+..++.+......+ ....|..+
T Consensus 223 ~~~~~~~~~l~~i~ip~~~-~-~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i---~~~~F~~~ 296 (394)
T 4fs7_A 223 GDFALSKTGVKNIIIPDSF-T-ELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIV---PEKTFYGC 296 (394)
T ss_dssp CTTTTTTCCCCEEEECTTC-C-EECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEE---CTTTTTTC
T ss_pred ehhhcccCCCceEEECCCc-e-ecccccccccccceeEEcCCCcce-eeccccccccccceeccCceee---cccccccc
Confidence 3344456788888886542 2 455555667889999999877543 5566788889999888776543 23457889
Q ss_pred CCCCEEEccCCCCcccCCCchhhHhhhcCCCCCCEEEccCCcCcccCChhHhhhccCCCEEeccCCcCeecCchhhhcCC
Q 040495 314 KNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNRISGTIPPGIRSHA 393 (443)
Q Consensus 314 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~ 393 (443)
.+|+.+.+..+ ++.... .+|.+|.+|+.+++.++ ++ .+....+..+.+|+.+++..+ ++..-...|.+|.
T Consensus 297 ~~L~~i~l~~~-i~~I~~------~aF~~c~~L~~i~lp~~-v~-~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~ 366 (394)
T 4fs7_A 297 SSLTEVKLLDS-VKFIGE------EAFESCTSLVSIDLPYL-VE-EIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCI 366 (394)
T ss_dssp TTCCEEEECTT-CCEECT------TTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCT
T ss_pred ccccccccccc-cceech------hhhcCCCCCCEEEeCCc-cc-EEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCC
Confidence 99999999754 554444 56899999999999754 66 455444444689999999877 6645567889999
Q ss_pred CCCeEeCcCCcCcccCchhhcCCCCCCEE
Q 040495 394 NLNWLTMDSNLFTGTIPPVIGELKNLQLL 422 (443)
Q Consensus 394 ~L~~L~L~~n~~~~~~p~~~~~l~~L~~L 422 (443)
+|+.+++..+ +. .+..++.++++|+.+
T Consensus 367 ~L~~i~lp~~-~~-~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 367 NLKKVELPKR-LE-QYRYDFEDTTKFKWI 393 (394)
T ss_dssp TCCEEEEEGG-GG-GGGGGBCTTCEEEEE
T ss_pred CCCEEEECCC-CE-EhhheecCCCCCcEE
Confidence 9999999765 33 345578888888764
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.40 E-value=2e-14 Score=136.80 Aligned_cols=115 Identities=13% Similarity=0.127 Sum_probs=48.3
Q ss_pred CCCcEEEcccCcCcccCChhhhcCCCCCcEEeCCCCcCCccCCccC-----cCCCCCCEEecccCcCccc----cchhhh
Q 040495 241 SSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSL-----SNASRLEMIEFSRNQFSGR----VSVDFS 311 (443)
Q Consensus 241 ~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l-----~~~~~L~~L~l~~n~l~~~----~~~~~~ 311 (443)
++|++|++++|.++......+...+++|++|++++|.+++.....+ ...++|++|++++|.+++. ++..+.
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~ 180 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA 180 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence 3445555555544322222222223345555555555543222222 1234555555555555432 122234
Q ss_pred CCCCCCEEEccCCCCcccCCCchhhHhhhcCCCCCCEEEccCCcCc
Q 040495 312 RLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQ 357 (443)
Q Consensus 312 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 357 (443)
.+++|++|++++|.+++.... .+...+..+++|++|++++|.++
T Consensus 181 ~~~~L~~L~Ls~N~l~~~g~~--~L~~~L~~~~~L~~L~Ls~N~i~ 224 (372)
T 3un9_A 181 GNTSVTHLSLLHTGLGDEGLE--LLAAQLDRNRQLQELNVAYNGAG 224 (372)
T ss_dssp TCSSCCEEECTTSSCHHHHHH--HHHHHGGGCSCCCEEECCSSCCC
T ss_pred cCCCcCEEeCCCCCCCcHHHH--HHHHHHhcCCCcCeEECCCCCCC
Confidence 445555555555554432211 11133344445555555555544
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.40 E-value=2.3e-14 Score=136.32 Aligned_cols=189 Identities=15% Similarity=0.162 Sum_probs=124.4
Q ss_pred CCCCcEEEcccCcCcccCChhh----hcCCCCCcEEeCCCCcCCccCCccC-cCCCCCCEEecccCcCccccchhh----
Q 040495 240 ISSLEVISLSENRFTGSLPVDA----GVNLPNLRQLSPNGNNFTGSIPVSL-SNASRLEMIEFSRNQFSGRVSVDF---- 310 (443)
Q Consensus 240 l~~L~~L~l~~n~l~~~~~~~~----~~~~~~L~~L~L~~n~l~~~~~~~l-~~~~~L~~L~l~~n~l~~~~~~~~---- 310 (443)
.+.|++|++++|.++......+ ....++|++|++++|.+++.....+ ..+++|++|++++|.+++.....+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 3578899999998874322222 2133689999999998875433333 235678999999998876544444
Q ss_pred -hCCCCCCEEEccCCCCcccCCCchhhHhhhcCCCCCCEEEccCCcCcccC----ChhHhhhccCCCEEeccCCcCeec-
Q 040495 311 -SRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVL----PQSMANFSSTIKQIAMGRNRISGT- 384 (443)
Q Consensus 311 -~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~----p~~~~~~~~~L~~L~L~~n~l~~~- 384 (443)
...++|+.|++++|.++..... .+...+..+++|++|++++|.+++.. +..+.. .++|+.|+|++|.+++.
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~--~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~-~~~L~~L~Ls~N~i~~~g 227 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVA--VLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDR-NRQLQELNVAYNGAGDTA 227 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHH--HHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGG-CSCCCEEECCSSCCCHHH
T ss_pred HhcCCccceeeCCCCCCChHHHH--HHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhc-CCCcCeEECCCCCCCHHH
Confidence 2467899999999988764331 12245677888999999999887543 223333 36889999999988864
Q ss_pred ---CchhhhcCCCCCeEeCcCCcCcccCchhhcCC---C--CCCEEE--ccCCcCcc
Q 040495 385 ---IPPGIRSHANLNWLTMDSNLFTGTIPPVIGEL---K--NLQLLD--LGGNFLQG 431 (443)
Q Consensus 385 ---~p~~l~~~~~L~~L~L~~n~~~~~~p~~~~~l---~--~L~~L~--l~~n~l~~ 431 (443)
++..+...++|++|+|++|.++..-...+... . .|+.+. +..|.++.
T Consensus 228 ~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~~ 284 (372)
T 3un9_A 228 ALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSE 284 (372)
T ss_dssp HHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CHH
T ss_pred HHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccCH
Confidence 34455667889999999998886555544433 2 166666 66666653
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
Probab=99.39 E-value=2e-12 Score=108.84 Aligned_cols=106 Identities=18% Similarity=0.236 Sum_probs=72.5
Q ss_pred CcEEEcccCcCcccCChhhhcCCCCCcEEeCCCCcCCccCCccCcCCCCCCEEecccCcCccccchhhhCCCCCCEEEcc
Q 040495 243 LEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMG 322 (443)
Q Consensus 243 L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 322 (443)
.+++++++|.++ .+|..+ .+++++|++++|++++..|..+..+++|++|++++|++++..+..|..+++|++|+++
T Consensus 11 ~~~l~~s~n~l~-~ip~~~---~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 11 GTTVDCSGKSLA-SVPTGI---PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp TTEEECTTSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEEeCCCCcC-ccCccC---CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 356666666666 566543 3567777777777776666667777777777777777776666666777777777777
Q ss_pred CCCCcccCCCchhhHhhhcCCCCCCEEEccCCcCcc
Q 040495 323 INNLGTRTANELDFINLLANCSKLERLYFNRNRFQG 358 (443)
Q Consensus 323 ~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 358 (443)
+|.+++..+ ..+..+++|++|++++|++..
T Consensus 87 ~N~l~~~~~------~~~~~l~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 87 DNQLKSIPR------GAFDNLKSLTHIWLLNNPWDC 116 (170)
T ss_dssp SSCCCCCCT------TTTTTCTTCCEEECCSSCBCT
T ss_pred CCccCEeCH------HHhcCCCCCCEEEeCCCCCCC
Confidence 777776655 446667777777777777763
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.38 E-value=3.3e-12 Score=107.92 Aligned_cols=104 Identities=20% Similarity=0.326 Sum_probs=76.1
Q ss_pred cEEEcccCcCcccCChhhhcCCCCCcEEeCCCCcCCccCCccCcCCCCCCEEecccCcCccccchhhhCCCCCCEEEccC
Q 040495 244 EVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGI 323 (443)
Q Consensus 244 ~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 323 (443)
+.++++++.++ .+|..+ .++|++|++++|++++..|..+..+++|++|++++|++++..+..|..+++|++|++++
T Consensus 15 ~~l~~~~n~l~-~iP~~~---~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGI---PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SEEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred cEEEeCCCCCC-ccCCCc---CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 56777777775 666544 26777777777777766677777777888888888887776555667777888888888
Q ss_pred CCCcccCCCchhhHhhhcCCCCCCEEEccCCcCc
Q 040495 324 NNLGTRTANELDFINLLANCSKLERLYFNRNRFQ 357 (443)
Q Consensus 324 n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 357 (443)
|.+++..+ ..+..+++|++|++++|++.
T Consensus 91 N~l~~l~~------~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 91 NHLKSIPR------GAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp SCCCCCCT------TTTTTCTTCSEEECCSSCBC
T ss_pred CccceeCH------HHhccccCCCEEEeCCCCcc
Confidence 87776655 45677778888888888776
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
Probab=99.38 E-value=2.2e-12 Score=108.61 Aligned_cols=106 Identities=21% Similarity=0.245 Sum_probs=80.6
Q ss_pred EEEEcCCCCCcccccccccCCCCCCEEeCCCCcCCCCCchhhcCCCccCeEEccCCCCCCCCChhhhcCCCCceeeccCC
Q 040495 77 TRLDLRNQSIGGPLSPYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSVDTN 156 (443)
Q Consensus 77 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n 156 (443)
+.++++++.++. +|..+ .++|++|++++|.+++..|..|.++++|++|++++|.+++..+..|..+++|++|++++|
T Consensus 12 ~~l~~s~n~l~~-ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 12 TTVDCSGKSLAS-VPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TEEECTTSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCc-cCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 367777777765 45444 378888888888888777888888888888888888888666666778888888888888
Q ss_pred cccccCCccccCCcCccEeeeeccccCcc
Q 040495 157 YLVGEIPSAIGSLFKLERLFIFHNHITGQ 185 (443)
Q Consensus 157 ~l~~~~p~~l~~l~~L~~L~l~~n~l~~~ 185 (443)
++++..+..+..+++|++|++++|.++..
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 88755555677788888888888877643
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.35 E-value=4.4e-12 Score=107.16 Aligned_cols=104 Identities=17% Similarity=0.228 Sum_probs=79.7
Q ss_pred EEEEcCCCCCcccccccccCCCCCCEEeCCCCcCCCCCchhhcCCCccCeEEccCCCCCCCCChhhhcCCCCceeeccCC
Q 040495 77 TRLDLRNQSIGGPLSPYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSVDTN 156 (443)
Q Consensus 77 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n 156 (443)
+.++++++.+. .+|..+. ++|++|++++|.+++..|..|.++++|++|++++|.+++..+..|..+++|++|++++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 46788888874 4555443 78888888888888777888888888888888888888655555678888888888888
Q ss_pred cccccCCccccCCcCccEeeeeccccC
Q 040495 157 YLVGEIPSAIGSLFKLERLFIFHNHIT 183 (443)
Q Consensus 157 ~l~~~~p~~l~~l~~L~~L~l~~n~l~ 183 (443)
++++..+..+..+++|++|++++|.+.
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred ccceeCHHHhccccCCCEEEeCCCCcc
Confidence 887544445777888888888888776
|
| >4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} | Back alignment and structure |
|---|
Probab=99.32 E-value=3.2e-10 Score=108.98 Aligned_cols=315 Identities=10% Similarity=0.056 Sum_probs=181.1
Q ss_pred cccCCC-CCCEEeCCCCcCCCCCchhhcCCCccCeEEccCCC---CCCCCChhhhcCCCCceeeccCCcccccCCccccC
Q 040495 93 YVGNLS-FLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNS---FSGTIPTNLSRRSNLIELSVDTNYLVGEIPSAIGS 168 (443)
Q Consensus 93 ~~~~l~-~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~---~~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~ 168 (443)
+|.++. .|+.+.+..+ ++..-..+|.++++|+.+.+..+. ++......|.++.+|+.+.+..+ ++......+..
T Consensus 58 aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~ 135 (394)
T 4gt6_A 58 VFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHH 135 (394)
T ss_dssp TTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTT
T ss_pred hccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhh
Confidence 455554 4788877643 554456678888888888887653 44344566777788887776543 33244456777
Q ss_pred CcCccEeeeeccccCccCCccccCCCCCCEEEccCCcCCccc-ccccCCCCCCEEEcccccCCCCCCccccCCCCCcEEE
Q 040495 169 LFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRI-DSLVQLRNLRLLDIAFNHFSGMIPPPIFNISSLEVIS 247 (443)
Q Consensus 169 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~ 247 (443)
+.+|+.+.+..+. .......+..+..|+.+.+..+. .... ..+. ..+|+.+.+..+... .....+..+.+++...
T Consensus 136 c~~L~~i~lp~~~-~~I~~~~F~~c~~L~~i~~~~~~-~~I~~~aF~-~~~l~~i~ip~~~~~-i~~~af~~c~~l~~~~ 211 (394)
T 4gt6_A 136 CEELDTVTIPEGV-TSVADGMFSYCYSLHTVTLPDSV-TAIEERAFT-GTALTQIHIPAKVTR-IGTNAFSECFALSTIT 211 (394)
T ss_dssp CTTCCEEECCTTC-CEECTTTTTTCTTCCEEECCTTC-CEECTTTTT-TCCCSEEEECTTCCE-ECTTTTTTCTTCCEEE
T ss_pred hccccccccccee-eeecccceeccccccccccccee-eEecccccc-ccceeEEEECCcccc-cccchhhhccccceec
Confidence 8888888886542 32444566777888888876542 2222 3333 356777777654322 2234566667777766
Q ss_pred cccCcCcccCChhhhc-------------CCCCCcEEeCCCCcCCccCCccCcCCCCCCEEecccCcCccccchhhhCCC
Q 040495 248 LSENRFTGSLPVDAGV-------------NLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLK 314 (443)
Q Consensus 248 l~~n~l~~~~~~~~~~-------------~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~ 314 (443)
....... .+....+. ....+..+.+... ++..-...|.++..|+.+.+..+.. ......|.+++
T Consensus 212 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~-v~~i~~~aF~~c~~L~~i~lp~~~~-~I~~~aF~~c~ 288 (394)
T 4gt6_A 212 SDSESYP-AIDNVLYEKSANGDYALIRYPSQREDPAFKIPNG-VARIETHAFDSCAYLASVKMPDSVV-SIGTGAFMNCP 288 (394)
T ss_dssp ECCSSSC-BSSSCEEEECTTSCEEEEECCTTCCCSEEECCTT-EEEECTTTTTTCSSCCEEECCTTCC-EECTTTTTTCT
T ss_pred ccccccc-cccceeecccccccccccccccccccceEEcCCc-ceEcccceeeecccccEEecccccc-eecCccccccc
Confidence 5544332 11111110 1123333433321 2223345677788888888765433 34455677888
Q ss_pred CCCEEEccCCCCcccCCCchhhHhhhcCCCCCCEEEccCCcCcccCChhHhhhccCCCEEeccCCcCeecCchhhhcCCC
Q 040495 315 NLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNRISGTIPPGIRSHAN 394 (443)
Q Consensus 315 ~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~ 394 (443)
.|+.+.+. +.++.... ..|.+|.+|+.+.+.++ ++ .+....+..+.+|+.+.+..+ ++..-...|.+|++
T Consensus 289 ~L~~i~l~-~~i~~I~~------~aF~~c~~L~~i~lp~~-v~-~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~ 358 (394)
T 4gt6_A 289 ALQDIEFS-SRITELPE------SVFAGCISLKSIDIPEG-IT-QILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTA 358 (394)
T ss_dssp TCCEEECC-TTCCEECT------TTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTT
T ss_pred ccccccCC-CcccccCc------eeecCCCCcCEEEeCCc-cc-EehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCC
Confidence 88888885 34444444 56788888888888754 54 444433333578888888654 55344567788888
Q ss_pred CCeEeCcCCcCcccCchhhcCCCCCCEEEccCCcC
Q 040495 395 LNWLTMDSNLFTGTIPPVIGELKNLQLLDLGGNFL 429 (443)
Q Consensus 395 L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l 429 (443)
|+.+++.++... -..+....+|+.+.+..|.+
T Consensus 359 L~~i~~~~~~~~---~~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 359 LNNIEYSGSRSQ---WNAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp CCEEEESSCHHH---HHTCBCCCCC----------
T ss_pred CCEEEECCceee---hhhhhccCCCCEEEeCCCCE
Confidence 888888876543 13456677788877766544
|
| >4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} | Back alignment and structure |
|---|
Probab=99.25 E-value=9.4e-10 Score=105.71 Aligned_cols=309 Identities=11% Similarity=0.102 Sum_probs=196.8
Q ss_pred EEEEEcCCCCCcccccccccCCCCCCEEeCCCCc---CCCCCchhhcCCCccCeEEccCCCCCCCCChhhhcCCCCceee
Q 040495 76 VTRLDLRNQSIGGPLSPYVGNLSFLRYINLANNG---FLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELS 152 (443)
Q Consensus 76 v~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~---~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~ 152 (443)
++.+.+... ++..-..+|.++++|+.+.+..+. ++..-..+|..+.+|+.+.+..+ ++......|.++.+|+.+.
T Consensus 66 L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i~ 143 (394)
T 4gt6_A 66 LTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTVT 143 (394)
T ss_dssp CCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEEE
T ss_pred CEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhccccccc
Confidence 556666532 333334578899999999998763 44334567888999998888654 4435566788899999999
Q ss_pred ccCCcccccCCccccCCcCccEeeeeccccCccCCccccCCCCCCEEEccCCcCCcccccccCCCCCCEEEcccccCCCC
Q 040495 153 VDTNYLVGEIPSAIGSLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLRLLDIAFNHFSGM 232 (443)
Q Consensus 153 l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~~~~~ 232 (443)
+..+. .......+..+.+|+.+.+..+ ++..-...+. ...|+.+.+..+........+..+..++............
T Consensus 144 lp~~~-~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~-~~~l~~i~ip~~~~~i~~~af~~c~~l~~~~~~~~~~~~~ 220 (394)
T 4gt6_A 144 IPEGV-TSVADGMFSYCYSLHTVTLPDS-VTAIEERAFT-GTALTQIHIPAKVTRIGTNAFSECFALSTITSDSESYPAI 220 (394)
T ss_dssp CCTTC-CEECTTTTTTCTTCCEEECCTT-CCEECTTTTT-TCCCSEEEECTTCCEECTTTTTTCTTCCEEEECCSSSCBS
T ss_pred cccee-eeecccceecccccccccccce-eeEecccccc-ccceeEEEECCcccccccchhhhccccceecccccccccc
Confidence 97543 3244566788899999988765 3323333443 4678888887654333335666677777776654433211
Q ss_pred CCc-------------cccCCCCCcEEEcccCcCcccCChhhhcCCCCCcEEeCCCCcCCccCCccCcCCCCCCEEeccc
Q 040495 233 IPP-------------PIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSR 299 (443)
Q Consensus 233 ~~~-------------~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~ 299 (443)
.-. .+.....+..+.+.+. ++ .+....+..+..|+.+.+..+... .-...|.+++.|+.+.+.
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~-v~-~i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~- 296 (394)
T 4gt6_A 221 DNVLYEKSANGDYALIRYPSQREDPAFKIPNG-VA-RIETHAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFS- 296 (394)
T ss_dssp SSCEEEECTTSCEEEEECCTTCCCSEEECCTT-EE-EECTTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECC-
T ss_pred cceeecccccccccccccccccccceEEcCCc-ce-EcccceeeecccccEEecccccce-ecCcccccccccccccCC-
Confidence 000 0111223344444322 22 344455667888999998765433 455678889999999996
Q ss_pred CcCccccchhhhCCCCCCEEEccCCCCcccCCCchhhHhhhcCCCCCCEEEccCCcCcccCChhHhhhccCCCEEeccCC
Q 040495 300 NQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRN 379 (443)
Q Consensus 300 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n 379 (443)
+.++......|.++.+|+.+++..+ ++.... .+|.+|.+|+.+.+..+ ++ .+....+..+++|+.+++.++
T Consensus 297 ~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~------~aF~~C~~L~~i~ip~s-v~-~I~~~aF~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 297 SRITELPESVFAGCISLKSIDIPEG-ITQILD------DAFAGCEQLERIAIPSS-VT-KIPESAFSNCTALNNIEYSGS 367 (394)
T ss_dssp TTCCEECTTTTTTCTTCCEEECCTT-CCEECT------TTTTTCTTCCEEEECTT-CC-BCCGGGGTTCTTCCEEEESSC
T ss_pred CcccccCceeecCCCCcCEEEeCCc-ccEehH------hHhhCCCCCCEEEECcc-cC-EEhHhHhhCCCCCCEEEECCc
Confidence 4566566677999999999999754 554444 67899999999999755 66 565554444689999999988
Q ss_pred cCeecCchhhhcCCCCCeEeCcCCcC
Q 040495 380 RISGTIPPGIRSHANLNWLTMDSNLF 405 (443)
Q Consensus 380 ~l~~~~p~~l~~~~~L~~L~L~~n~~ 405 (443)
.... ..+..+.+|+.+.+..+.+
T Consensus 368 ~~~~---~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 368 RSQW---NAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp HHHH---HTCBCCCCC----------
T ss_pred eeeh---hhhhccCCCCEEEeCCCCE
Confidence 6442 4567788899888876654
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=99.13 E-value=1.6e-10 Score=109.11 Aligned_cols=102 Identities=15% Similarity=0.130 Sum_probs=82.9
Q ss_pred EcCCC-CCcccccccccCCCCCCEEeCCC-CcCCCCCchhhcCCCccCeEEccCCCCCCCCChhhhcCCCCceeeccCCc
Q 040495 80 DLRNQ-SIGGPLSPYVGNLSFLRYINLAN-NGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSVDTNY 157 (443)
Q Consensus 80 ~l~~~-~~~~~~~~~~~~l~~L~~L~L~~-n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~ 157 (443)
+.+++ ++++ +|. +..+++|++|+|++ |.+++..+..|+++++|++|+|++|.+++..|..|.++++|++|+|++|+
T Consensus 14 ~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 91 (347)
T 2ifg_A 14 RCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA 91 (347)
T ss_dssp ECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC
T ss_pred EcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCc
Confidence 33444 5554 677 88899999999996 99987777889999999999999999998888889999999999999999
Q ss_pred ccccCCccccCCcCccEeeeeccccCc
Q 040495 158 LVGEIPSAIGSLFKLERLFIFHNHITG 184 (443)
Q Consensus 158 l~~~~p~~l~~l~~L~~L~l~~n~l~~ 184 (443)
+++..+..+..++ |+.|++.+|.+..
T Consensus 92 l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 92 LESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp CSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred cceeCHHHcccCC-ceEEEeeCCCccC
Confidence 9854444455444 9999999988863
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.12 E-value=1.2e-10 Score=109.91 Aligned_cols=158 Identities=17% Similarity=0.236 Sum_probs=100.9
Q ss_pred CCCCCcEEeCCCCcCCccCCccCcCCCCCCEEecccCcCccccchhhh--CCCCCCEEEccC--CCCcccC-CCchhhHh
Q 040495 264 NLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFS--RLKNLSFLNMGI--NNLGTRT-ANELDFIN 338 (443)
Q Consensus 264 ~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~l~~--n~l~~~~-~~~~~~~~ 338 (443)
.+|+|+.|.+++|.-. .++. +. .++|+.|++..+.+.......+. .+|+|+.|+|+. |...+.. ...+. .
T Consensus 170 ~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~--~ 244 (362)
T 2ra8_A 170 AMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFR--P 244 (362)
T ss_dssp TCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTG--G
T ss_pred cCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHH--H
Confidence 6778888888766211 2222 32 67888888888877655444443 678888888753 2222211 10111 1
Q ss_pred hh--cCCCCCCEEEccCCcCcccCChhHhh--hccCCCEEeccCCcCeec----CchhhhcCCCCCeEeCcCCcCcccCc
Q 040495 339 LL--ANCSKLERLYFNRNRFQGVLPQSMAN--FSSTIKQIAMGRNRISGT----IPPGIRSHANLNWLTMDSNLFTGTIP 410 (443)
Q Consensus 339 ~~--~~~~~L~~L~l~~n~l~~~~p~~~~~--~~~~L~~L~L~~n~l~~~----~p~~l~~~~~L~~L~L~~n~~~~~~p 410 (443)
.+ ..+++|++|++.+|.+.+..+..+.. ..++|+.|+|+.|.+++. ++..+..+++|+.|++++|.++...-
T Consensus 245 ~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~ 324 (362)
T 2ra8_A 245 LFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMK 324 (362)
T ss_dssp GSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHH
T ss_pred HHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHH
Confidence 12 35788999999988887655554443 247899999999988875 33444567889999999998875544
Q ss_pred hhhcC-CCCCCEEEccCCc
Q 040495 411 PVIGE-LKNLQLLDLGGNF 428 (443)
Q Consensus 411 ~~~~~-l~~L~~L~l~~n~ 428 (443)
+.+.. + ...+++++++
T Consensus 325 ~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 325 KELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp HHHHHHC--CSEEECCSBC
T ss_pred HHHHHHc--CCEEEecCCc
Confidence 44443 2 4568888776
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=99.12 E-value=2.5e-10 Score=107.73 Aligned_cols=105 Identities=16% Similarity=0.128 Sum_probs=62.9
Q ss_pred EEEcccc-cCCCCCCccccCCCCCcEEEccc-CcCcccCChhhhcCCCCCcEEeCCCCcCCccCCccCcCCCCCCEEecc
Q 040495 221 LLDIAFN-HFSGMIPPPIFNISSLEVISLSE-NRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFS 298 (443)
Q Consensus 221 ~L~l~~n-~~~~~~~~~l~~l~~L~~L~l~~-n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~ 298 (443)
.++++++ .++ .+|. +..+++|++|+|++ |.++ .+|...+..+++|+.|+|++|++++..|..|.++++|+.|+|+
T Consensus 12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQ-HLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCC-EECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCC-CcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 3566665 555 3555 66666666666664 6665 3443333356666666666666666666666666666666666
Q ss_pred cCcCccccchhhhCCCCCCEEEccCCCCccc
Q 040495 299 RNQFSGRVSVDFSRLKNLSFLNMGINNLGTR 329 (443)
Q Consensus 299 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 329 (443)
+|++++..+..+..++ |+.|++.+|.+...
T Consensus 89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~ 118 (347)
T 2ifg_A 89 FNALESLSWKTVQGLS-LQELVLSGNPLHCS 118 (347)
T ss_dssp SSCCSCCCSTTTCSCC-CCEEECCSSCCCCC
T ss_pred CCccceeCHHHcccCC-ceEEEeeCCCccCC
Confidence 6666655444444444 66666666666543
|
| >4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} | Back alignment and structure |
|---|
Probab=99.00 E-value=1.1e-07 Score=90.67 Aligned_cols=301 Identities=9% Similarity=0.022 Sum_probs=145.6
Q ss_pred CCCCCCEEeCCCCcCCCCCchhhcCCCccCeEEccCCCCCCCCChhhhcCCCCceeeccCCcccccCCccccCCcCccEe
Q 040495 96 NLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSVDTNYLVGEIPSAIGSLFKLERL 175 (443)
Q Consensus 96 ~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L 175 (443)
...+|+.+.+.. .++..-..+|.++.+|+.+++..+ ++......|.++ +|+.+.+..+ ++......|.. .+|+.+
T Consensus 44 ~~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~-~~L~~i 118 (379)
T 4h09_A 44 DRDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQG-TDLDDF 118 (379)
T ss_dssp GGGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTT-CCCSEE
T ss_pred cccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceecc-CCcccc
Confidence 344555555543 233233445566666666666433 332333444443 4555544322 22122222332 255555
Q ss_pred eeeccccCccCCccccCCCCCCEEEccCCcCCcccccccCCCCCCEEEcccccCC------------CCCCccccCCCCC
Q 040495 176 FIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLRLLDIAFNHFS------------GMIPPPIFNISSL 243 (443)
Q Consensus 176 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~~~------------~~~~~~l~~l~~L 243 (443)
.+..+... .....+.+ .+++.+.+..+.-.-....+..+.+++...+..+... ......+.....+
T Consensus 119 ~lp~~~~~-i~~~~F~~-~~l~~~~~~~~v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (379)
T 4h09_A 119 EFPGATTE-IGNYIFYN-SSVKRIVIPKSVTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTG 196 (379)
T ss_dssp ECCTTCCE-ECTTTTTT-CCCCEEEECTTCCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCC
T ss_pred cCCCcccc-cccccccc-ceeeeeeccceeeccccchhcccccccccccccccceeecccceecccccceeccccccccc
Confidence 55443211 11122222 2344444332211111133344444554444332211 0111223333444
Q ss_pred cEEEcccCcCcccCChhhhcCCCCCcEEeCCCCcCCccCCccCcCCCCCCEEecccCcCccccchhhhCCCCCCEEEccC
Q 040495 244 EVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGI 323 (443)
Q Consensus 244 ~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 323 (443)
..+.+..... .+....+....+++.+.+..+ +.......+..+..|+.+.+..+ ++......|..+.+|+.+.+..
T Consensus 197 ~~~~~~~~~~--~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~ 272 (379)
T 4h09_A 197 TEFTIPSTVK--TVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYA 272 (379)
T ss_dssp SEEECCTTCC--EECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECC
T ss_pred ccccccccee--EEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhccccccc
Confidence 5554433321 222223335566777766544 22233455667777777777654 4545555677777777777754
Q ss_pred CCCcccCCCchhhHhhhcCCCCCCEEEccCCcCcccCChhHhhhccCCCEEeccCCcCeecCchhhhcCCCCCeEeCcCC
Q 040495 324 NNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNRISGTIPPGIRSHANLNWLTMDSN 403 (443)
Q Consensus 324 n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~n 403 (443)
+ +..... ..|.+|.+|+.+.+.++.++ .++...+.-+.+|+.+.|..+ ++..-..+|.+|++|+.+.+..+
T Consensus 273 ~-i~~i~~------~aF~~c~~L~~i~l~~~~i~-~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 273 K-VKTVPY------LLCSGCSNLTKVVMDNSAIE-TLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS 343 (379)
T ss_dssp C-CSEECT------TTTTTCTTCCEEEECCTTCC-EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT
T ss_pred c-ceeccc------cccccccccccccccccccc-eehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc
Confidence 3 333333 45777778888887777776 444443333577788777644 44334456777778887777544
Q ss_pred cCcccCchhhcCCC
Q 040495 404 LFTGTIPPVIGELK 417 (443)
Q Consensus 404 ~~~~~~p~~~~~l~ 417 (443)
++..-..+|.++.
T Consensus 344 -v~~I~~~aF~~c~ 356 (379)
T 4h09_A 344 -ITLIESGAFEGSS 356 (379)
T ss_dssp -CCEECTTTTTTSS
T ss_pred -cCEEchhHhhCCC
Confidence 4312233455543
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.99 E-value=3.2e-10 Score=106.91 Aligned_cols=142 Identities=11% Similarity=0.151 Sum_probs=99.9
Q ss_pred CCccCcCCCCCCEEecccCcCccccchhhhCCCCCCEEEccCCCCcccCCCchhhHhhh--cCCCCCCEEEccC--CcCc
Q 040495 282 IPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLL--ANCSKLERLYFNR--NRFQ 357 (443)
Q Consensus 282 ~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~--~~~~~L~~L~l~~--n~l~ 357 (443)
+...+..+++|+.|++++|.-. .++. + .+++|+.|++..+.+..... ..+ ..+++|++|+|+. |...
T Consensus 164 L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l------~~l~~~~lp~L~~L~L~~~~~~~~ 234 (362)
T 2ra8_A 164 LSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVV------EDILGSDLPNLEKLVLYVGVEDYG 234 (362)
T ss_dssp CHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHH------HHHHHSBCTTCCEEEEECBCGGGT
T ss_pred HHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHH------HHHHHccCCCCcEEEEeccccccc
Confidence 4455677899999999987311 2233 3 38899999999887765433 333 3789999999863 2211
Q ss_pred cc-----CChhHh-hhccCCCEEeccCCcCeecCchhhh---cCCCCCeEeCcCCcCccc----CchhhcCCCCCCEEEc
Q 040495 358 GV-----LPQSMA-NFSSTIKQIAMGRNRISGTIPPGIR---SHANLNWLTMDSNLFTGT----IPPVIGELKNLQLLDL 424 (443)
Q Consensus 358 ~~-----~p~~~~-~~~~~L~~L~L~~n~l~~~~p~~l~---~~~~L~~L~L~~n~~~~~----~p~~~~~l~~L~~L~l 424 (443)
+. +...+. ..+++|+.|+|++|.+.+..+..+. .+++|+.|+|+.|.+++. ++..+..+++|+.|++
T Consensus 235 ~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L 314 (362)
T 2ra8_A 235 FDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINM 314 (362)
T ss_dssp CCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEEC
T ss_pred cchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEEC
Confidence 11 111111 1258999999999999876555554 477899999999999864 3444456799999999
Q ss_pred cCCcCccc
Q 040495 425 GGNFLQGS 432 (443)
Q Consensus 425 ~~n~l~~~ 432 (443)
++|.++..
T Consensus 315 ~~n~i~d~ 322 (362)
T 2ra8_A 315 KYNYLSDE 322 (362)
T ss_dssp CSBBCCHH
T ss_pred CCCcCCHH
Confidence 99998754
|
| >4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} | Back alignment and structure |
|---|
Probab=98.96 E-value=2e-07 Score=88.78 Aligned_cols=291 Identities=13% Similarity=0.107 Sum_probs=188.8
Q ss_pred hcCCCccCeEEccCCCCCCCCChhhhcCCCCceeeccCCcccccCCccccCCcCccEeeeeccccCccCCccccCCCCCC
Q 040495 118 IGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSVDTNYLVGEIPSAIGSLFKLERLFIFHNHITGQLPASIGNLSSLL 197 (443)
Q Consensus 118 l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 197 (443)
+....+|+.+.+.. .++.....+|.++.+|+.+.+..+ ++..-..+|.++ +|+.+.+..+ +.......+.. .+|+
T Consensus 42 ~~~~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~-~~L~ 116 (379)
T 4h09_A 42 YKDRDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQG-TDLD 116 (379)
T ss_dssp GGGGGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTT-CCCS
T ss_pred cccccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceecc-CCcc
Confidence 45667888888865 355455677899999999999754 553445567766 6788777544 33233334444 4799
Q ss_pred EEEccCCcCCcccccccCCCCCCEEEcccccCCCCCCccccCCCCCcEEEcccCcCcccCC-----------hhhhcCCC
Q 040495 198 AFDVRENILWGRIDSLVQLRNLRLLDIAFNHFSGMIPPPIFNISSLEVISLSENRFTGSLP-----------VDAGVNLP 266 (443)
Q Consensus 198 ~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-----------~~~~~~~~ 266 (443)
.+.+..+........+.. .+++.+.+..+ +...-...+..+..++...+..+....... ...+....
T Consensus 117 ~i~lp~~~~~i~~~~F~~-~~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (379)
T 4h09_A 117 DFEFPGATTEIGNYIFYN-SSVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAK 194 (379)
T ss_dssp EEECCTTCCEECTTTTTT-CCCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTC
T ss_pred cccCCCcccccccccccc-ceeeeeeccce-eeccccchhcccccccccccccccceeecccceecccccceeccccccc
Confidence 998876532221233333 35666655433 222233456677788887776543321000 00111334
Q ss_pred CCcEEeCCCCcCCccCCccCcCCCCCCEEecccCcCccccchhhhCCCCCCEEEccCCCCcccCCCchhhHhhhcCCCCC
Q 040495 267 NLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKL 346 (443)
Q Consensus 267 ~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~L 346 (443)
.+..+.+....- ......+..+..++.+.+..+ +.......+..+..|+.+.+..+ ++.... ..+.++.+|
T Consensus 195 ~~~~~~~~~~~~-~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~------~aF~~~~~l 265 (379)
T 4h09_A 195 TGTEFTIPSTVK-TVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGS------FLLQNCTAL 265 (379)
T ss_dssp CCSEEECCTTCC-EECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECT------TTTTTCTTC
T ss_pred ccccccccccee-EEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCc------cccceeehh
Confidence 455555544322 234456677888999888654 44455667889999999999765 554444 568899999
Q ss_pred CEEEccCCcCcccCChhHhhhccCCCEEeccCCcCeecCchhhhcCCCCCeEeCcCCcCcccCchhhcCCCCCCEEEccC
Q 040495 347 ERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNRISGTIPPGIRSHANLNWLTMDSNLFTGTIPPVIGELKNLQLLDLGG 426 (443)
Q Consensus 347 ~~L~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~ 426 (443)
+.+.+..+ ++ .++...+..+++|+.+.+.++.++..-...|.+|.+|+.+.|..+ ++..-..+|.++++|+.+.+..
T Consensus 266 ~~i~l~~~-i~-~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 266 KTLNFYAK-VK-TVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPK 342 (379)
T ss_dssp CEEEECCC-CS-EECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCT
T ss_pred cccccccc-ce-eccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECC
Confidence 99999754 55 455555554689999999999888556678999999999999765 5522345788999999999865
Q ss_pred C
Q 040495 427 N 427 (443)
Q Consensus 427 n 427 (443)
+
T Consensus 343 ~ 343 (379)
T 4h09_A 343 S 343 (379)
T ss_dssp T
T ss_pred c
Confidence 4
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=98.86 E-value=2e-09 Score=91.68 Aligned_cols=119 Identities=16% Similarity=0.173 Sum_probs=65.6
Q ss_pred hhCCCCCCEEEccCC-CCcccCCCchhhHhhhcCCCCCCEEEccCCcCcccCChhHhhh---ccCCCEEeccCCcCeec-
Q 040495 310 FSRLKNLSFLNMGIN-NLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANF---SSTIKQIAMGRNRISGT- 384 (443)
Q Consensus 310 ~~~l~~L~~L~l~~n-~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~---~~~L~~L~L~~n~l~~~- 384 (443)
+...+.|+.|++++| .++...... +...+...++|++|+|++|.+.+.....+... .++|+.|+|++|.+.+.
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~--l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g 109 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKA--CAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG 109 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHH--HHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHH--HHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHH
Confidence 344455555555555 444332211 11344555666666666666654322222211 24566677776666654
Q ss_pred ---CchhhhcCCCCCeEeC--cCCcCccc----CchhhcCCCCCCEEEccCCcCc
Q 040495 385 ---IPPGIRSHANLNWLTM--DSNLFTGT----IPPVIGELKNLQLLDLGGNFLQ 430 (443)
Q Consensus 385 ---~p~~l~~~~~L~~L~L--~~n~~~~~----~p~~~~~l~~L~~L~l~~n~l~ 430 (443)
+...+...++|++|+| ++|.++.. +.+.+...++|++|++++|.+.
T Consensus 110 ~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 110 ILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 3445566667777777 66777643 3344555677777777777764
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=98.70 E-value=1.1e-08 Score=87.16 Aligned_cols=119 Identities=9% Similarity=0.077 Sum_probs=63.2
Q ss_pred CcCCCCCCEEecccC-cCccc----cchhhhCCCCCCEEEccCCCCcccCCCchhhHhhhcCCCCCCEEEccCCcCcccC
Q 040495 286 LSNASRLEMIEFSRN-QFSGR----VSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVL 360 (443)
Q Consensus 286 l~~~~~L~~L~l~~n-~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 360 (443)
+...+.|++|++++| .+... +...+...++|++|++++|.++...... +...+...++|++|+|++|.+++..
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~--l~~~L~~n~~L~~L~L~~N~i~~~g 109 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFA--LAEMLKVNNTLKSLNVESNFISGSG 109 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHH--HHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHH--HHHHHHhCCCcCEEECcCCcCCHHH
Confidence 344455555555555 44432 1222344555666666666555432211 1134455566667777766666432
Q ss_pred ChhHhhh---ccCCCEEec--cCCcCeec----CchhhhcCCCCCeEeCcCCcCc
Q 040495 361 PQSMANF---SSTIKQIAM--GRNRISGT----IPPGIRSHANLNWLTMDSNLFT 406 (443)
Q Consensus 361 p~~~~~~---~~~L~~L~L--~~n~l~~~----~p~~l~~~~~L~~L~L~~n~~~ 406 (443)
...+... .++|+.|+| ++|.+.+. +...+...++|++|+|++|.+.
T Consensus 110 ~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 110 ILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 2222111 246777777 66766654 3344556677888888888775
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
Probab=98.64 E-value=2.3e-09 Score=95.99 Aligned_cols=21 Identities=14% Similarity=0.033 Sum_probs=14.5
Q ss_pred CCCccceeeCCCCCcEEEEEc
Q 040495 61 LCQWTGVTCGRRHQRVTRLDL 81 (443)
Q Consensus 61 ~c~w~gv~c~~~~~~v~~L~l 81 (443)
.|.|.|+.|+....+|..+-.
T Consensus 77 l~~~~g~i~~~~~~ki~~~v~ 97 (267)
T 3rw6_A 77 LKAVNYKILDRENRRISIIIN 97 (267)
T ss_dssp HHHTTSSCBCTTSCBCCCEEE
T ss_pred HHhcCcEEECCCCCEEEEEEe
Confidence 578999999876556644433
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
Probab=98.34 E-value=7.9e-07 Score=79.52 Aligned_cols=79 Identities=19% Similarity=0.270 Sum_probs=41.0
Q ss_pred CCCCCCEEEccCCcCcc--cCChhHhhhccCCCEEeccCCcCeecCchhhhcCC--CCCeEeCcCCcCcccCc-------
Q 040495 342 NCSKLERLYFNRNRFQG--VLPQSMANFSSTIKQIAMGRNRISGTIPPGIRSHA--NLNWLTMDSNLFTGTIP------- 410 (443)
Q Consensus 342 ~~~~L~~L~l~~n~l~~--~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~--~L~~L~L~~n~~~~~~p------- 410 (443)
++++|+.|+|++|++++ .+|..+.. +++|+.|+|++|++++. ..+..+. +|+.|+|++|.+.+.+|
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~-l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQK-APNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHH-STTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhh-CCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 34455555555555553 23333333 25566666666665543 1222222 66666666666665544
Q ss_pred hhhcCCCCCCEEE
Q 040495 411 PVIGELKNLQLLD 423 (443)
Q Consensus 411 ~~~~~l~~L~~L~ 423 (443)
..+..+++|+.||
T Consensus 245 ~il~~~P~L~~LD 257 (267)
T 3rw6_A 245 AIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHCTTCCEES
T ss_pred HHHHHCcccCeEC
Confidence 2345566676665
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
Probab=98.14 E-value=1.1e-06 Score=72.91 Aligned_cols=84 Identities=5% Similarity=0.090 Sum_probs=48.2
Q ss_pred CCCEEEccCCCCcccCCCchhhHhhhcCCCCCCEEEccCCc-CcccCChhHhhh---ccCCCEEeccCCc-CeecCchhh
Q 040495 315 NLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNR-FQGVLPQSMANF---SSTIKQIAMGRNR-ISGTIPPGI 389 (443)
Q Consensus 315 ~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~p~~~~~~---~~~L~~L~L~~n~-l~~~~p~~l 389 (443)
+|+.||++++.++.... ..+.+|++|++|+|++|. +++..-..+... +++|+.|+|++|. +++..-..+
T Consensus 62 ~L~~LDLs~~~Itd~GL------~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L 135 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGF------DHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIAL 135 (176)
T ss_dssp CEEEEEEESCCCCGGGG------GGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHG
T ss_pred eEeEEeCcCCCccHHHH------HHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHH
Confidence 45555555555444332 334566666666666663 554333333331 2457777777764 666544556
Q ss_pred hcCCCCCeEeCcCCc
Q 040495 390 RSHANLNWLTMDSNL 404 (443)
Q Consensus 390 ~~~~~L~~L~L~~n~ 404 (443)
..+++|++|++++|.
T Consensus 136 ~~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 136 HHFRNLKYLFLSDLP 150 (176)
T ss_dssp GGCTTCCEEEEESCT
T ss_pred hcCCCCCEEECCCCC
Confidence 677777777777774
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
Probab=98.06 E-value=1.7e-06 Score=71.83 Aligned_cols=84 Identities=12% Similarity=0.067 Sum_probs=50.1
Q ss_pred CcEEEEEcCCCCCcccccccccCCCCCCEEeCCCCc-CCCCCchhhcCC----CccCeEEccCCC-CCCCCChhhhcCCC
Q 040495 74 QRVTRLDLRNQSIGGPLSPYVGNLSFLRYINLANNG-FLGEIPPQIGRL----NMLEGLVLSNNS-FSGTIPTNLSRRSN 147 (443)
Q Consensus 74 ~~v~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~-~~~~~~~~l~~l----~~L~~L~l~~n~-~~~~~p~~l~~l~~ 147 (443)
-++++||++++.+++.--..+..+++|++|+|++|. +++.--..++.+ ++|++|++++|. +++..-..+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 357777777777665544556667777777777763 554444445553 356677776653 55443344555666
Q ss_pred CceeeccCCc
Q 040495 148 LIELSVDTNY 157 (443)
Q Consensus 148 L~~L~l~~n~ 157 (443)
|++|+++++.
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 6666666554
|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=98.02 E-value=5.7e-06 Score=70.01 Aligned_cols=91 Identities=9% Similarity=0.133 Sum_probs=42.2
Q ss_pred hhcCCCCCCEEEccCCcCcccCChhHhh---hccCCCEEeccCCcCeec----CchhhhcCCCCCeEeCcCC---cCcc-
Q 040495 339 LLANCSKLERLYFNRNRFQGVLPQSMAN---FSSTIKQIAMGRNRISGT----IPPGIRSHANLNWLTMDSN---LFTG- 407 (443)
Q Consensus 339 ~~~~~~~L~~L~l~~n~l~~~~p~~~~~---~~~~L~~L~L~~n~l~~~----~p~~l~~~~~L~~L~L~~n---~~~~- 407 (443)
.+.....|+.|+|++|++.+..-..+.. .-+.|+.|+|++|.|.+. +-+.+...+.|++|+|++| .+..
T Consensus 65 aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~ 144 (197)
T 1pgv_A 65 AACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQ 144 (197)
T ss_dssp HHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHH
T ss_pred HHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHH
Confidence 3444445555555555554322222211 024455555555555543 2233444455666666543 2332
Q ss_pred ---cCchhhcCCCCCCEEEccCCcC
Q 040495 408 ---TIPPVIGELKNLQLLDLGGNFL 429 (443)
Q Consensus 408 ---~~p~~~~~l~~L~~L~l~~n~l 429 (443)
.+.+.+...+.|++|+++.|..
T Consensus 145 g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 145 VEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHHHHHHHhCCCcCeEeccCCCc
Confidence 1334444556666666665543
|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=97.83 E-value=2e-05 Score=66.63 Aligned_cols=117 Identities=11% Similarity=0.139 Sum_probs=63.4
Q ss_pred CCCCCCEEecccC-cCccc----cchhhhCCCCCCEEEccCCCCcccCCCchhhHhhhcCCCCCCEEEccCCcCcccCCh
Q 040495 288 NASRLEMIEFSRN-QFSGR----VSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQ 362 (443)
Q Consensus 288 ~~~~L~~L~l~~n-~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~ 362 (443)
+-+.|++|++++| ++... +...+..-+.|+.|+|++|.+++.....+. ..+.....|++|+|+.|.|++..-.
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA--~aL~~N~tL~~L~L~~N~Ig~~Ga~ 116 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLI--ELIETSPSLRVLNVESNFLTPELLA 116 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHH--HHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHH--HHHhcCCccCeEecCCCcCCHHHHH
Confidence 3445555555553 44321 223344455666666666666554332222 4555666777777777777644333
Q ss_pred hHhhh---ccCCCEEeccCC---cCeec----CchhhhcCCCCCeEeCcCCcCc
Q 040495 363 SMANF---SSTIKQIAMGRN---RISGT----IPPGIRSHANLNWLTMDSNLFT 406 (443)
Q Consensus 363 ~~~~~---~~~L~~L~L~~n---~l~~~----~p~~l~~~~~L~~L~L~~n~~~ 406 (443)
.+... .+.|+.|+|++| .+... +...+...+.|++|+++.|.+.
T Consensus 117 ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 117 RLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME 170 (197)
T ss_dssp HHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred HHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence 33221 245777777654 33322 3445666777888888777654
|
| >3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* | Back alignment and structure |
|---|
Probab=96.47 E-value=0.0043 Score=48.70 Aligned_cols=57 Identities=14% Similarity=0.253 Sum_probs=31.8
Q ss_pred CEEEccCCCCc-ccCCCchhhHhhhcCCCCCCEEEccCCcCcccCChhHhhhccCCCEEeccCCcCe
Q 040495 317 SFLNMGINNLG-TRTANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNRIS 382 (443)
Q Consensus 317 ~~L~l~~n~l~-~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~ 382 (443)
..++.+++.++ ...|.. -..+|++|+|++|+|+ .+|...+...++|+.|+|++|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~--------lp~~l~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTA--------FPVDTTELVLTGNNLT-ALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSC--------CCTTCSEEECTTSCCS-SCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCC--------CCcCCCEEECCCCcCC-ccChhhhhhccccCEEEecCCCee
Confidence 35666666665 122211 1135677777777776 555544433456777777766654
|
| >3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* | Back alignment and structure |
|---|
Probab=96.44 E-value=0.0039 Score=48.96 Aligned_cols=57 Identities=12% Similarity=0.217 Sum_probs=44.4
Q ss_pred CEEEccCCcCc-ccCChhHhhhccCCCEEeccCCcCeecCchhhhcCCCCCeEeCcCCcCc
Q 040495 347 ERLYFNRNRFQ-GVLPQSMANFSSTIKQIAMGRNRISGTIPPGIRSHANLNWLTMDSNLFT 406 (443)
Q Consensus 347 ~~L~l~~n~l~-~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~n~~~ 406 (443)
+.++.+++.++ ..+|..+ +++++.|+|++|+|+..-+..|..+++|++|+|++|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~l---p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAF---PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCC---CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCC---CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 47888888886 4677543 467999999999999544556788889999999999775
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 443 | ||||
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 3e-26 | |
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 6e-11 | |
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 3e-07 | |
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 1e-06 | |
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 3e-06 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 5e-16 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 6e-15 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 2e-07 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 2e-06 | |
| d1ozna_ | 284 | c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept | 6e-13 | |
| d1ozna_ | 284 | c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept | 1e-09 | |
| d1ozna_ | 284 | c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept | 2e-09 | |
| d1ozna_ | 284 | c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept | 6e-07 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 2e-12 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 4e-12 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 3e-11 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 7e-06 | |
| d2astb2 | 284 | c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 | 1e-08 | |
| d2astb2 | 284 | c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 | 4e-04 | |
| d1p9ag_ | 266 | c.10.2.7 (G:) von Willebrand factor binding domain | 2e-06 | |
| d1p9ag_ | 266 | c.10.2.7 (G:) von Willebrand factor binding domain | 3e-04 | |
| d1p9ag_ | 266 | c.10.2.7 (G:) von Willebrand factor binding domain | 0.003 | |
| d1dcea3 | 124 | c.10.2.2 (A:444-567) Rab geranylgeranyltransferase | 1e-05 | |
| d1dcea3 | 124 | c.10.2.2 (A:444-567) Rab geranylgeranyltransferase | 0.003 | |
| d1h6ua2 | 227 | c.10.2.1 (A:36-262) Internalin H {Listeria monocyt | 3e-05 | |
| d1h6ua2 | 227 | c.10.2.1 (A:36-262) Internalin H {Listeria monocyt | 0.001 | |
| d1h6ua2 | 227 | c.10.2.1 (A:36-262) Internalin H {Listeria monocyt | 0.002 | |
| d1w8aa_ | 192 | c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga | 1e-04 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 3e-04 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 0.001 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 0.002 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 0.002 | |
| d2omxa2 | 199 | c.10.2.1 (A:37-235) Internalin B {Listeria monocyt | 0.003 | |
| d1h6ta2 | 210 | c.10.2.1 (A:31-240) Internalin B {Listeria monocyt | 0.003 |
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 105 bits (263), Expect = 3e-26
Identities = 84/304 (27%), Positives = 125/304 (41%), Gaps = 12/304 (3%)
Query: 31 NETDRLALLAIKLQLHDPLGVTSSWNNSMSLCQ--WTGVTC--GRRHQRVTRLDLRNQSI 86
N D+ ALL IK L +P SSW + C W GV C + RV LDL ++
Sbjct: 4 NPQDKQALLQIKKDLGNP-TTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNL 62
Query: 87 GG--PLSPYVGNLSFLRYINLANNGFL-GEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLS 143
P+ + NL +L ++ + L G IPP I +L L L +++ + SG IP LS
Sbjct: 63 PKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLS 122
Query: 144 RRSNLIELSVDTNYLVGEIPSAIGSLFKLERLFIFHNHITGQLPASIGNLSSLLA-FDVR 202
+ L+ L N L G +P +I SL L + N I+G +P S G+ S L +
Sbjct: 123 QIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTIS 182
Query: 203 ENILWGRIDSLVQLRNLRLLDIAFNHFSGMIPPPIFNISSLEVISLSENRFTGSLPVDAG 262
N L G+I NL +D++ N G + + + I L++N L
Sbjct: 183 RNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGL 242
Query: 263 VNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMG 322
N L N G++P L+ L + S N G + L+
Sbjct: 243 SKNLNGLDLR--NNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYA 299
Query: 323 INNL 326
N
Sbjct: 300 NNKC 303
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 60.9 bits (146), Expect = 6e-11
Identities = 61/276 (22%), Positives = 109/276 (39%), Gaps = 16/276 (5%)
Query: 164 SAIGSLFKLERLFIFHNHITG--QLPASIGNLSSLLAFDVR--ENILWGRIDSLVQLRNL 219
+++ L + ++ +P+S+ NL L + N++ ++ +L L
Sbjct: 44 DTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQL 103
Query: 220 RLLDIAFNHFSGMIPPPIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFT 279
L I + SG IP + I +L + S N +G+LP + +LPNL ++ +GN +
Sbjct: 104 HYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLP-PSISSLPNLVGITFDGNRIS 162
Query: 280 GSIPVSLSNASRLEM-IEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANELDFIN 338
G+IP S + S+L + SRN+ +G++ F+ L G + N
Sbjct: 163 GAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKN 222
Query: 339 LLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNRISGTIPPGIRSHANLNWL 398
L F+ + + + + NRI GT+P G+ L+ L
Sbjct: 223 TQKIHLAKNSLAFDLGKVGLSKNLNGLDLRN---------NRIYGTLPQGLTQLKFLHSL 273
Query: 399 TMDSNLFTGTIPPVIGELKNLQLLDLGGNFLQGSIP 434
+ N G IP G L+ + N P
Sbjct: 274 NVSFNNLCGEIPQ-GGNLQRFDVSAYANNKCLCGSP 308
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 49.7 bits (117), Expect = 3e-07
Identities = 17/58 (29%), Positives = 23/58 (39%)
Query: 179 HNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLRLLDIAFNHFSGMIPPP 236
+N I G LP + L L + +V N L G I L+ + A N P P
Sbjct: 253 NNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLP 310
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 47.8 bits (112), Expect = 1e-06
Identities = 23/85 (27%), Positives = 33/85 (38%), Gaps = 1/85 (1%)
Query: 55 WNNSMSLCQWTGVTCGRRHQRVTRLDLRNQSIGGPLSPYVGNLSFLRYINLANNGFLGEI 114
+ + + + LDLRN I G L + L FL +N++ N GEI
Sbjct: 225 KIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI 284
Query: 115 PPQIGRLNMLEGLVLSNNSFSGTIP 139
PQ G L + +NN P
Sbjct: 285 -PQGGNLQRFDVSAYANNKCLCGSP 308
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 46.7 bits (109), Expect = 3e-06
Identities = 16/66 (24%), Positives = 25/66 (37%), Gaps = 1/66 (1%)
Query: 98 SFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSVDTNY 157
L ++L NN G +P + +L L L +S N+ G IP + N
Sbjct: 244 KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNK 302
Query: 158 LVGEIP 163
+ P
Sbjct: 303 CLCGSP 308
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 76.2 bits (186), Expect = 5e-16
Identities = 48/277 (17%), Positives = 92/277 (33%), Gaps = 13/277 (4%)
Query: 107 NNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSVDTNYLVGEIPSAI 166
++ L ++P + L L NN + + NL L + N + P A
Sbjct: 18 SDLGLEKVPKDLPP--DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAF 75
Query: 167 GSLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLRLLDIAF 226
L KLERL++ N + L L + + + + + + L
Sbjct: 76 APLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNP 135
Query: 227 NHFSGMIPPPIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSL 286
SG+ + L I +++ T ++P P+L +L +GN T SL
Sbjct: 136 LKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQG---LPPSLTELHLDGNKITKVDAASL 191
Query: 287 SNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKL 346
+ L + S N S + + +L L++ N L A+ +
Sbjct: 192 KGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGL-------ADHKYI 244
Query: 347 ERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNRISG 383
+ +Y + N + K+ + +
Sbjct: 245 QVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFS 281
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 73.1 bits (178), Expect = 6e-15
Identities = 52/298 (17%), Positives = 96/298 (32%), Gaps = 20/298 (6%)
Query: 62 CQWTGVTCGRRH---------QRVTRLDLRNQSIGGPLSPYVGNLSFLRYINLANNGFLG 112
C V C LDL+N I NL L + L NN
Sbjct: 10 CHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISK 69
Query: 113 EIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSVDTNYLVGEIPSAIGSLFKL 172
P L LE L LS N L + + + + + + +
Sbjct: 70 ISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVV 129
Query: 173 ERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLRLLDIAFNHFSGM 232
E L +G + + L + + + L +L L + N + +
Sbjct: 130 E-LGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGL--PPSLTELHLDGNKITKV 186
Query: 233 IPPPIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRL 292
+ +++L + LS N + + N P+LR+L N N +P L++ +
Sbjct: 187 DAASLKGLNNLAKLGLSFNSISAV-DNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYI 244
Query: 293 EMIEFSRNQFSGRVSVDF------SRLKNLSFLNMGINNLGTRTANELDFINLLANCS 344
+++ N S S DF ++ + S +++ N + F + +
Sbjct: 245 QVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAA 302
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 49.7 bits (117), Expect = 2e-07
Identities = 36/179 (20%), Positives = 55/179 (30%), Gaps = 13/179 (7%)
Query: 266 PNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINN 325
P+ L N T N L + N+ S F+ L L L + N
Sbjct: 31 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90
Query: 326 LGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIK-QIAMGRNRISGT 384
L L+ L + N V + I ++ + SG
Sbjct: 91 LKELPEK---------MPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGI 141
Query: 385 IPPGIRSHANLNWLTMDSNLFTGTIPPVIGELKNLQLLDLGGNFLQGSIPSSLGNLTLL 443
+ L+++ + T TIP G +L L L GN + +SL L L
Sbjct: 142 ENGAFQGMKKLSYIRIADTNIT-TIPQ--GLPPSLTELHLDGNKITKVDAASLKGLNNL 197
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 47.3 bits (111), Expect = 2e-06
Identities = 29/163 (17%), Positives = 58/163 (35%), Gaps = 10/163 (6%)
Query: 281 SIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLL 340
+P L +++ N+ + DF LKNL L + N + +
Sbjct: 24 KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFA----- 76
Query: 341 ANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNRISGTIPPGIRSHANLNWLTM 400
KLERLY ++N+ + LP+ M ++ ++ ++ G+ + L
Sbjct: 77 -PLVKLERLYLSKNQLKE-LPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVV-ELGT 133
Query: 401 DSNLFTGTIPPVIGELKNLQLLDLGGNFLQGSIPSSLGNLTLL 443
+ +G +K L + + + +LT L
Sbjct: 134 NPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTEL 176
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 66.8 bits (161), Expect = 6e-13
Identities = 40/255 (15%), Positives = 73/255 (28%), Gaps = 31/255 (12%)
Query: 76 VTRLDLRNQSIGGPLSPYVGNLSFLRYINLANNGFLGEI--------------------- 114
R+ L I + L + L +N
Sbjct: 34 SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQL 93
Query: 115 ----PPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSVDTNYLVGEIPSAIGSLF 170
P L L L L P + L L + N L L
Sbjct: 94 RSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLG 153
Query: 171 KLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRI-DSLVQLRNLRLLDIAFNHF 229
L LF+ N I+ + L SL + +N + + L L L + N+
Sbjct: 154 NLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNL 213
Query: 230 SGMIPPPIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNA 289
S + + + +L+ + L++N + L++ + + S+P L+
Sbjct: 214 SALPTEALAPLRALQYLRLNDNPWVCDCRARP--LWAWLQKFRGSSSEVPCSLPQRLAG- 270
Query: 290 SRLEMIEFSRNQFSG 304
++ + N G
Sbjct: 271 --RDLKRLAANDLQG 283
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 56.7 bits (135), Expect = 1e-09
Identities = 51/266 (19%), Positives = 92/266 (34%), Gaps = 13/266 (4%)
Query: 103 INLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSVDTNYLVGEI 162
+ G L +P I + + L N S + NL L + +N L
Sbjct: 16 TSCPQQG-LQAVPVGIPAA--SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARID 72
Query: 163 PSAIGSLFKLERLFIFHNHITGQL-PASIGNLSSLLAFDV-RENILWGRIDSLVQLRNLR 220
+A L LE+L + N + PA+ L L + R + L L+
Sbjct: 73 AAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQ 132
Query: 221 LLDIAFNHFSGMIPPPIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTG 280
L + N + ++ +L + L NR + +P A L +L +L + N
Sbjct: 133 YLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISS-VPERAFRGLHSLDRLLLHQNRVAH 191
Query: 281 SIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLL 340
P + + RL + N S + + L+ L +L + N +
Sbjct: 192 VHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW-------VCDCRAR 244
Query: 341 ANCSKLERLYFNRNRFQGVLPQSMAN 366
+ L++ + + LPQ +A
Sbjct: 245 PLWAWLQKFRGSSSEVPCSLPQRLAG 270
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 56.0 bits (133), Expect = 2e-09
Identities = 46/273 (16%), Positives = 79/273 (28%), Gaps = 16/273 (5%)
Query: 161 EIPSAIGSLFKLERLFIFHNHITGQLPASIGNLSSL-LAFDVRENILWGRIDSLVQLRNL 219
+P I + +R+F+ N I+ AS +L + + + + L L
Sbjct: 25 AVPVGIPAA--SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALL 82
Query: 220 RLLDIAFNHFSGMIPPPIFNI-SSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNF 278
LD++ N + P F+ L + L L L L+ L N
Sbjct: 83 EQLDLSDNAQLRSVDPATFHGLGRLHTLHLD-RCGLQELGPGLFRGLAALQYLYLQDNAL 141
Query: 279 TGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANELDFIN 338
+ + L + N+ S F L +L L + N + + +
Sbjct: 142 QALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLG 201
Query: 339 LLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNRISGTIPPGIRSHANLNWL 398
L LP ++ + + N A L
Sbjct: 202 RLMTLY-------LFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA-RPLWAWLQKF 253
Query: 399 TMDSNLFTGTIPPVIGELKNLQLLDLGGNFLQG 431
S+ ++P L L L N LQG
Sbjct: 254 RGSSSEVPCSLPQ---RLAGRDLKRLAANDLQG 283
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.7 bits (114), Expect = 6e-07
Identities = 33/245 (13%), Positives = 63/245 (25%), Gaps = 20/245 (8%)
Query: 217 RNLRLLDIAFNHFSGMIPPPIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGN 276
+ + + N S + +L ++ L N + +
Sbjct: 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91
Query: 277 NFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANELDF 336
P + RL + R F L L +L + N L +
Sbjct: 92 QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD 151
Query: 337 ------------------INLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGR 378
L+RL ++NR V P + + + +
Sbjct: 152 LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLY-LFA 210
Query: 379 NRISGTIPPGIRSHANLNWLTMDSNLFTGTIPPVIGELKNLQLLDLGGNFLQGSIPSSLG 438
N +S + L +L ++ N + LQ + + S+P L
Sbjct: 211 NNLSALPTEALAPLRALQYLRLNDNPWVCDC-RARPLWAWLQKFRGSSSEVPCSLPQRLA 269
Query: 439 NLTLL 443
L
Sbjct: 270 GRDLK 274
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 66.2 bits (160), Expect = 2e-12
Identities = 41/197 (20%), Positives = 75/197 (38%), Gaps = 13/197 (6%)
Query: 55 WNNSMSLCQWTGVTCGRRHQRVTRLDLRNQSIGGPLSPYVGNLSFLRYINLANNGFLGEI 114
+ + Q + +T + L L + + +L+ L ++LANN
Sbjct: 200 ESLIATNNQISDITPLGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLA 257
Query: 115 PPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSVDTNYLVGEIPSAIGSLFKLER 174
P + L L L L N S P +++ N E S I +L L
Sbjct: 258 P--LSGLTKLTELKLGANQISNISPLA----GLTALTNLELNENQLEDISPISNLKNLTY 311
Query: 175 LFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLRLLDIAFNHFSGMIP 234
L ++ N+I+ P + +L+ L N + + SL L N+ L N S +
Sbjct: 312 LTLYFNNISDISP--VSSLTKLQRLFFANNKVSD-VSSLANLTNINWLSAGHNQISDLT- 367
Query: 235 PPIFNISSLEVISLSEN 251
P+ N++ + + L++
Sbjct: 368 -PLANLTRITQLGLNDQ 383
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 65.0 bits (157), Expect = 4e-12
Identities = 64/390 (16%), Positives = 124/390 (31%), Gaps = 53/390 (13%)
Query: 74 QRVTRLDLRNQSIGGPLSPYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNS 133
+ L ++ +S +L + + G + I + LN L + SNN
Sbjct: 22 AEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLG-IKSIDG-VEYLNNLTQINFSNNQ 77
Query: 134 FSGTIPTNLSRRSNLIELSVDTNYLVGEIPSAIGSLFKLERLFIFHNHITGQLPASIGNL 193
+ P L + L+++ ++ N + P A + LF L
Sbjct: 78 LTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLK------ 129
Query: 194 SSLLAFDVRENILWGRIDSLVQLRNLRLLDIAFNHFSGMIPPPIFNISSLEVISLSENRF 253
N L +++ + L L G + +++L + +
Sbjct: 130 -----NLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISS 184
Query: 254 TGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRL 313
+ L NL L N + P+ + L+ + + NQ + + L
Sbjct: 185 NKVSDISVLAKLTNLESLIATNNQISDITPL--GILTNLDELSLNGNQLKDIGT--LASL 240
Query: 314 KNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLP------------ 361
NL+ L++ N + + L+ +KL L N+ + P
Sbjct: 241 TNLTDLDLANNQISN--------LAPLSGLTKLTELKLGANQISNISPLAGLTALTNLEL 292
Query: 362 -------QSMANFSSTIKQIAMGRNRISGTIPPGIRSHANLNWLTMDSNLFTGTIPPVIG 414
S + + + + N IS P + S L L +N + +
Sbjct: 293 NENQLEDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLA 348
Query: 415 ELKNLQLLDLGGNFLQGSIP-SSLGNLTLL 443
L N+ L G N + P ++L +T L
Sbjct: 349 NLTNINWLSAGHNQISDLTPLANLTRITQL 378
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 62.3 bits (150), Expect = 3e-11
Identities = 70/369 (18%), Positives = 130/369 (35%), Gaps = 44/369 (11%)
Query: 74 QRVTRLDLRNQSIGGPLSPYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNS 133
+VT L I + V L+ L IN +NN P + L L ++++NN
Sbjct: 44 DQVTTLQADRLGIKS-IDG-VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQ 99
Query: 134 FSGTIPTNLSRRSNLIELSVDTNYLVGEIPSA---------------IGSLFKLERLFIF 178
+ P + L + + + + I +L L L
Sbjct: 100 IADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQL 159
Query: 179 HNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLRLLDIAFNHFSGMIPPPIF 238
+ NL++L D+ N + +L NL L N S + P I
Sbjct: 160 SFGNQVTDLKPLANLTTLERLDISSNKVSDISVLA-KLTNLESLIATNNQISDITPLGIL 218
Query: 239 NISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFS 298
++L+ +SL+ N+ + +L NL L N + P LS ++L ++
Sbjct: 219 --TNLDELSLNGNQLKD---IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLG 271
Query: 299 RNQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQG 358
NQ S + N+L+ I+ ++N L L N
Sbjct: 272 ANQISN----------ISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISD 321
Query: 359 VLPQSMANFSSTIKQIAMGRNRISGTIPPGIRSHANLNWLTMDSNLFTGTIPPVIGELKN 418
+ P +++ + ++++ N++S + + N+NWL+ N + P + L
Sbjct: 322 ISP--VSSLTK-LQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTR 374
Query: 419 LQLLDLGGN 427
+ L L
Sbjct: 375 ITQLGLNDQ 383
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 45.8 bits (107), Expect = 7e-06
Identities = 45/273 (16%), Positives = 101/273 (36%), Gaps = 18/273 (6%)
Query: 168 SLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLRLLDIAFN 227
+L + + + ++T + + +L + + ID + L NL ++ + N
Sbjct: 20 ALAEKMKTVLGKTNVTDTVSQT--DLDQVTTLQADRLGI-KSIDGVEYLNNLTQINFSNN 76
Query: 228 HFSGMIPPPIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLS 287
+ + P+ N++ L I ++ N+ P+ NL L + + ++
Sbjct: 77 QLTDI--TPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNL 134
Query: 288 NASR------LEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLA 341
N ++ S ++S N+ ++N++ I++LA
Sbjct: 135 NRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLA 194
Query: 342 NCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNRISGTIPPGIRSHANLNWLTMD 401
+ LE L N+ + P + + ++++ N++ + S NL L +
Sbjct: 195 KLTNLESLIATNNQISDITPL---GILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLA 249
Query: 402 SNLFTGTIPPVIGELKNLQLLDLGGNFLQGSIP 434
+N + P + L L L LG N + P
Sbjct: 250 NNQISNLAP--LSGLTKLTELKLGANQISNISP 280
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.6 bits (127), Expect = 1e-08
Identities = 33/247 (13%), Positives = 74/247 (29%), Gaps = 4/247 (1%)
Query: 200 DVRENILWGRIDSLVQLRNLRLLDIAFNHFSGMIPPPIFNISSLEVISLSENRFTGSLPV 259
D+ L + + + + + + F+ ++ + LS + S
Sbjct: 6 DLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLH 64
Query: 260 DAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSV--DFSRLKNLS 317
L+ LS G + I +L+ S L + S ++ S L
Sbjct: 65 GILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLD 124
Query: 318 FLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMG 377
LN+ T ++ ++ ++L + +N + L + + +
Sbjct: 125 ELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSD 184
Query: 378 RNRISGTIPPGIRSHANLNWLTM-DSNLFTGTIPPVIGELKNLQLLDLGGNFLQGSIPSS 436
+ L L++ +GE+ L+ L + G G++
Sbjct: 185 SVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLL 244
Query: 437 LGNLTLL 443
L L
Sbjct: 245 KEALPHL 251
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.7 bits (91), Expect = 4e-04
Identities = 35/252 (13%), Positives = 76/252 (30%), Gaps = 37/252 (14%)
Query: 77 TRLDLRNQSIGGPLSPYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSG 136
LDL +++ ++ + + + + F+ + + ++ + LSN+
Sbjct: 3 QTLDLTGKNLHPDVTGRLLSQG-VIAFRCPRS-FMDQPLAEHFSPFRVQHMDLSNSVIEV 60
Query: 137 -TIPTNLSRRSNLIELSVDTNYLVGEIPSAIGSLFKLERLFIFH--NHITGQLPASIGNL 193
T+ LS+ S L LS++ L I + + L RL + L + +
Sbjct: 61 STLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSC 120
Query: 194 SSLLAFDVRENILWGRIDSLVQL--------------------------------RNLRL 221
S L ++ + V + + L
Sbjct: 121 SRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHL 180
Query: 222 LDIAFNHFSGMIPPPIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGS 281
F ++ L+ +SLS + +P L+ L G G+
Sbjct: 181 DLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGT 240
Query: 282 IPVSLSNASRLE 293
+ + L+
Sbjct: 241 LQLLKEALPHLQ 252
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.6 bits (109), Expect = 2e-06
Identities = 33/205 (16%), Positives = 63/205 (30%), Gaps = 23/205 (11%)
Query: 239 NISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFS 298
++S ++ + T +LP D + L + N +L +RL +
Sbjct: 8 KVASHLEVNCDKRNLT-ALPPDLP---KDTTILHLSENLLYTFSLATLMPYTRLTQLNLD 63
Query: 299 RNQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERL--------- 349
R + L L L++ N L + L RL
Sbjct: 64 RAEL--TKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALR 121
Query: 350 -------YFNRNRFQGVLPQSMANFSSTIKQIAMGRNRISGTIPPGIRSHANLNWLTMDS 402
+ + LP + + ++++++ N ++ + NL+ L +
Sbjct: 122 GLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQE 181
Query: 403 NLFTGTIPPVIGELKNLQLLDLGGN 427
N TIP L L GN
Sbjct: 182 NSLY-TIPKGFFGSHLLPFAFLHGN 205
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.5 bits (93), Expect = 3e-04
Identities = 26/179 (14%), Positives = 49/179 (27%), Gaps = 4/179 (2%)
Query: 100 LRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSVDTNYLV 159
++L+ N + L L L + L L + N L
Sbjct: 33 TTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDG--TLPVLGTLDLSHNQLQ 90
Query: 160 GEIPSAIGSLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNL 219
F+ + L A G + + L L
Sbjct: 91 SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL 150
Query: 220 RLLDIAFNHFSGMIPPPIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNF 278
L +A N+ + + + + +L+ + L EN ++P L +GN +
Sbjct: 151 EKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFF-GSHLLPFAFLHGNPW 207
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.0 bits (84), Expect = 0.003
Identities = 39/179 (21%), Positives = 55/179 (30%), Gaps = 5/179 (2%)
Query: 76 VTRLDLRNQSIGGPLSPYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFS 135
T L L + + + L +NL G L +L L LS+N
Sbjct: 33 TTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL--TKLQVDGTLPVLGTLDLSHNQLQ 90
Query: 136 GTIPTNLSRRSNLIELSVDTNYLVGEIPSAIGSLFKLERLFIFHNHITGQLPASIGNLSS 195
L L V N L A+ L +L+ L++ N + P +
Sbjct: 91 SLPLLG-QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK 149
Query: 196 LLAFDVRENILWGRI-DSLVQLRNLRLLDIAFNHFSGMIPPPIFNISSLEVISLSENRF 253
L + N L L L NL L + N IP F L L N +
Sbjct: 150 LEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 42.4 bits (99), Expect = 1e-05
Identities = 24/102 (23%), Positives = 39/102 (38%), Gaps = 4/102 (3%)
Query: 179 HNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLRLLDIAFNHFSGMIPPPIF 238
H +T + L + D+ N L +L LR L +L + N +
Sbjct: 7 HKDLTV--LCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNAL--ENVDGVA 62
Query: 239 NISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTG 280
N+ L+ + L NR S + V+ P L L+ GN+
Sbjct: 63 NLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 35.5 bits (81), Expect = 0.003
Identities = 23/129 (17%), Positives = 46/129 (35%), Gaps = 9/129 (6%)
Query: 220 RLLDIAFNHFSGMIPPPIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQL-SPNGNNF 278
R+L +A + + + + + + LS NR P L LR L ++
Sbjct: 1 RVLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPP-----ALAALRCLEVLQASDN 53
Query: 279 TGSIPVSLSNASRLEMIEFSRNQFSGRVSVD-FSRLKNLSFLNMGINNLGTRTANELDFI 337
++N RL+ + N+ ++ L LN+ N+L +
Sbjct: 54 ALENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLA 113
Query: 338 NLLANCSKL 346
+L + S +
Sbjct: 114 EMLPSVSSI 122
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Score = 42.7 bits (99), Expect = 3e-05
Identities = 30/216 (13%), Positives = 67/216 (31%), Gaps = 15/216 (6%)
Query: 236 PIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMI 295
P +++ I+ ++ T ++ +L + LS G T +I + + L +
Sbjct: 14 PDPALANAIKIAAGKSNVTDTVTQA---DLDGITTLSAFGTGVT-TIE-GVQYLNNLIGL 68
Query: 296 EFSRNQF------SGRVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERL 349
E NQ + L N+ + + + L L
Sbjct: 69 ELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGL 128
Query: 350 YFNRN-RFQGVLPQSMANFSSTIKQIAMGRNRISGTIPPGIRSHANLNWLTMDSNLFTGT 408
+ +++ + + + + + + L L D N +
Sbjct: 129 SNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDI 188
Query: 409 IPPVIGELKNLQLLDLGGNFLQGSIP-SSLGNLTLL 443
P + L NL + L N + P ++ NL ++
Sbjct: 189 SP--LASLPNLIEVHLKNNQISDVSPLANTSNLFIV 222
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Score = 38.1 bits (87), Expect = 0.001
Identities = 38/228 (16%), Positives = 78/228 (34%), Gaps = 19/228 (8%)
Query: 74 QRVTRLDLRNQSIGGPLSPYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNS 133
++ ++ ++ +L + ++ G + I + LN L GL L +N
Sbjct: 19 ANAIKIAAGKSNVTDTVTQ--ADLDGITTLSAFGTG-VTTIEG-VQYLNNLIGLELKDNQ 74
Query: 134 FSGTIPTNLSRRSNLIELSVDTNYLVGEIPSAIGSLFKLERLFIFHNHITGQLPASIGNL 193
+ P + +ELS + V I + +++ L
Sbjct: 75 ITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVL 134
Query: 194 SSLLAFDVRENILWGRIDSLVQLRNLRLLDIAFNHFSGMIPPPIFNISSLEVISLSENRF 253
L + L G + + + P+ N+S L + +N+
Sbjct: 135 YLDLNQITNISPLAGLTNLQYL---------SIGNAQVSDLTPLANLSKLTTLKADDNKI 185
Query: 254 TGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQ 301
+ P+ +LPNL ++ N + P L+N S L ++ + NQ
Sbjct: 186 SDISPLA---SLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLT-NQ 227
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Score = 36.9 bits (84), Expect = 0.002
Identities = 30/217 (13%), Positives = 65/217 (29%), Gaps = 16/217 (7%)
Query: 215 QLRNLRLLDIAFNHFSGMIPPPIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPN 274
L N + ++ + + ++ + +S T ++ L NL L
Sbjct: 17 ALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTT---IEGVQYLNNLIGLELK 71
Query: 275 GNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANEL 334
N T P+ + + + ++ S + + L
Sbjct: 72 DNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNL 131
Query: 335 DF-------INLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNRISGTIPP 387
I ++ + L L + V + S + + N+IS P
Sbjct: 132 QVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP- 190
Query: 388 GIRSHANLNWLTMDSNLFTGTIPPVIGELKNLQLLDL 424
+ S NL + + +N + P + NL ++ L
Sbjct: 191 -LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTL 224
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Score = 40.6 bits (93), Expect = 1e-04
Identities = 32/180 (17%), Positives = 60/180 (33%), Gaps = 17/180 (9%)
Query: 62 CQWTGVTCGRRH---------QRVTRLDLR-NQSIGGPLSPYVGNLSFLRYINLANNGFL 111
C+ T V C R T L L N+ G L L + L N
Sbjct: 8 CEGTTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT 67
Query: 112 GEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSVDTNYLVGEIPSAIGSLFK 171
G P + ++ L L N L L++ N + +P + L
Sbjct: 68 GIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNS 127
Query: 172 LERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRI--DSLVQLRNLRLLDIAFNHF 229
L L + N +L+ + ++++ G + ++R++++ D+ + F
Sbjct: 128 LTSLNLASNPFNC-----NCHLAWFAEWLRKKSLNGGAARCGAPSKVRDVQIKDLPHSEF 182
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 40.2 bits (92), Expect = 3e-04
Identities = 27/93 (29%), Positives = 40/93 (43%), Gaps = 8/93 (8%)
Query: 129 LSNNSFSGTIPTNLSRRSNLIELSVDTNYLVGEIPSAIGSLFKLERLFIFHNHITGQLPA 188
N+ S I + +L EL+V N L+ E+P+ L ERL NH+ ++P
Sbjct: 267 YYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRL---ERLIASFNHLA-EVPE 321
Query: 189 SIGNLSSLLAFDVRENILWGRIDSLVQLRNLRL 221
NL L V N L D + +LR+
Sbjct: 322 LPQNLKQL---HVEYNPLREFPDIPESVEDLRM 351
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 38.7 bits (88), Expect = 0.001
Identities = 47/302 (15%), Positives = 85/302 (28%), Gaps = 14/302 (4%)
Query: 146 SNLIELSVDTNYLVGEIPSAIGSLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENI 205
EL ++ L +P L E L N +T +LP +L SLL +
Sbjct: 38 RQAHELELNNLGL-SSLPELPPHL---ESLVASCNSLT-ELPELPQSLKSLLVDNNNLKA 92
Query: 206 LWGRIDSLVQLRNLRLLDIAFNHFSGMIP---PPIFNISSLEVISLSENRFTGSLPVDAG 262
L L L + N S ++ L + + +
Sbjct: 93 LSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQL 152
Query: 263 VNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMG 322
LP L+ L + + + L + + L L+ +
Sbjct: 153 EELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYAD 212
Query: 323 INNLGTR-TANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNRI 381
N L T + + + ++ + +++ + S + N
Sbjct: 213 NNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNAS 272
Query: 382 SGTIPPGIRSHANLNWLTMDSNLFTGTIPPVIGELKNLQLLDLGGNFLQGSIPSSLGNLT 441
S I +L L + +N +P L+ L N L +P NL
Sbjct: 273 SNEIRSLCDLPPSLEELNVSNNKLI-ELPA---LPPRLERLIASFNHLA-EVPELPQNLK 327
Query: 442 LL 443
L
Sbjct: 328 QL 329
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 37.5 bits (85), Expect = 0.002
Identities = 19/95 (20%), Positives = 34/95 (35%), Gaps = 10/95 (10%)
Query: 226 FNHFSGMIPPPIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVS 285
N S I SLE +++S N+ LP P L +L + N+ +P
Sbjct: 269 LNASSNEIRSLCDLPPSLEELNVSNNKLI-ELP----ALPPRLERLIASFNHLA-EVPEL 322
Query: 286 LSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLN 320
N L+ + N + +++L +
Sbjct: 323 PQN---LKQLHVEYNPLREFPDI-PESVEDLRMNS 353
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.6 bits (85), Expect = 0.002
Identities = 16/159 (10%), Positives = 44/159 (27%), Gaps = 21/159 (13%)
Query: 242 SLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQ 301
++ + + + + + L + + + T + +S+A
Sbjct: 3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSA------------ 50
Query: 302 FSGRVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLP 361
L+ LN+ N LG + + L K+++L G
Sbjct: 51 --------LRVNPALAELNLRSNELGDVGVHCV-LQGLQTPSCKIQKLSLQNCCLTGAGC 101
Query: 362 QSMANFSSTIKQIAMGRNRISGTIPPGIRSHANLNWLTM 400
+++ T+ + + G++
Sbjct: 102 GVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQ 140
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Score = 36.6 bits (83), Expect = 0.003
Identities = 30/189 (15%), Positives = 56/189 (29%), Gaps = 14/189 (7%)
Query: 264 NLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVD-FSRLKNLSFLNMG 322
L + N T VS ++ ++ ++ R S+D L NL+ +N
Sbjct: 16 ALAEKMKTVLGKTNVTD--TVSQTDLDQVTTLQADRLGIK---SIDGVEYLNNLTQINFS 70
Query: 323 INNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNR-- 380
N L T + + + + L + +
Sbjct: 71 NNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNL 130
Query: 381 -----ISGTIPPGIRSHANLNWLTMDSNLFTGTIPPVIGELKNLQLLDLGGNFLQG-SIP 434
S TI + ++ + T + L L+ LD+ N + S+
Sbjct: 131 NRLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKPLANLTTLERLDISSNKVSDISVL 190
Query: 435 SSLGNLTLL 443
+ L NL L
Sbjct: 191 AKLTNLESL 199
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Score = 36.5 bits (83), Expect = 0.003
Identities = 30/191 (15%), Positives = 63/191 (32%), Gaps = 21/191 (10%)
Query: 74 QRVTRLDLRNQSIGGPLSPYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNS 133
+ +L+ +S+ ++ L+ + I N+ I L + L L+ N
Sbjct: 24 AETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNK 79
Query: 134 FSGTIPTNLSRRSNLIELSVDTNYLV---------------GEIPSAIGSLFKLERLFIF 178
+ P + + L + + S I L L +L
Sbjct: 80 LTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESL 139
Query: 179 HNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLRLLDIAFNHFSGMIPPPIF 238
+ ++ + + L E+ I L L L+ L ++ NH S + +
Sbjct: 140 YLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDL--RALA 197
Query: 239 NISSLEVISLS 249
+ +L+V+ L
Sbjct: 198 GLKNLDVLELF 208
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 443 | |||
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 100.0 | |
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 99.97 | |
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 99.96 | |
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 99.96 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 99.95 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 99.94 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 99.92 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 99.92 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 99.89 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 99.89 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 99.85 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 99.85 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 99.83 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 99.78 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 99.76 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 99.75 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 99.74 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 99.72 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 99.72 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.71 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.71 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 99.69 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.69 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.69 | |
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.67 | |
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.65 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 99.58 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 99.58 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 99.55 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 99.52 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 99.48 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 99.48 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 99.32 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 99.29 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 99.24 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 99.22 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 98.34 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 98.26 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 98.15 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 98.14 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 97.93 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 97.72 |
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=100.00 E-value=9.4e-42 Score=317.88 Aligned_cols=292 Identities=30% Similarity=0.483 Sum_probs=218.6
Q ss_pred CCCHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCC--CccceeeCCCC--CcEEEEEcCCCCCcc--cccccccCCCCCCE
Q 040495 29 NSNETDRLALLAIKLQLHDPLGVTSSWNNSMSLC--QWTGVTCGRRH--QRVTRLDLRNQSIGG--PLSPYVGNLSFLRY 102 (443)
Q Consensus 29 ~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~c--~w~gv~c~~~~--~~v~~L~l~~~~~~~--~~~~~~~~l~~L~~ 102 (443)
-|.++|++||++||+++.+|. .+++|..+.||| .|.||+|+... .||+.|+|+++.+.| .+|+.++++++|++
T Consensus 2 ~c~~~e~~aLl~~k~~~~~~~-~l~sW~~~~d~C~~~w~gv~C~~~~~~~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~ 80 (313)
T d1ogqa_ 2 LCNPQDKQALLQIKKDLGNPT-TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNF 80 (313)
T ss_dssp CSCHHHHHHHHHHHHHTTCCG-GGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCSE
T ss_pred CCCHHHHHHHHHHHHHCCCCC-cCCCCCCCCCCCCCcCCCeEEeCCCCcEEEEEEECCCCCCCCCCCCChHHhcCccccc
Confidence 489999999999999999875 688999888999 49999998653 489999999999987 47889999999999
Q ss_pred EeCCC-CcCCCCCchhhcCCCccCeEEccCCCCCCCCChhhhcCCCCceeeccCCcccccCCccccCCcCccEeeeeccc
Q 040495 103 INLAN-NGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSVDTNYLVGEIPSAIGSLFKLERLFIFHNH 181 (443)
Q Consensus 103 L~L~~-n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~ 181 (443)
|+|++ |.++|.+|..++++++|++|++++|.+.+..+..+..+.+|++++++.|.+.+.+|..++++++++.+++++|.
T Consensus 81 L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~ 160 (313)
T d1ogqa_ 81 LYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNR 160 (313)
T ss_dssp EEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSC
T ss_pred cccccccccccccccccccccccchhhhccccccccccccccchhhhcccccccccccccCchhhccCcccceeeccccc
Confidence 99987 78999999999999999999999999998889889999999999999999998999999999999999999999
Q ss_pred cCccCCccccCCCCC-CEEEccCCcCCccc-ccccCCCCCCEEEcccccCCCCCCccccCCCCCcEEEcccCcCcccCCh
Q 040495 182 ITGQLPASIGNLSSL-LAFDVRENILWGRI-DSLVQLRNLRLLDIAFNHFSGMIPPPIFNISSLEVISLSENRFTGSLPV 259 (443)
Q Consensus 182 l~~~~~~~l~~l~~L-~~L~l~~n~l~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~ 259 (443)
+.+.+|..+..+..+ +.+++++|.+++.. ..+..+ ....++++.+...+.+|..+..+++++.++++++.+++.+|
T Consensus 161 l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l-~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~- 238 (313)
T d1ogqa_ 161 ISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG- 238 (313)
T ss_dssp CEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGC-CCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGG-
T ss_pred ccccccccccccccccccccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccccccc-
Confidence 998899888877665 66777776666554 333333 23356666666655555555555666666666665554433
Q ss_pred hhhcCCCCCcEEeCCCCcCCccCCccCcCCCCCCEEecccCcCccccchhhhCCCCCCEEEccCCC
Q 040495 260 DAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINN 325 (443)
Q Consensus 260 ~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 325 (443)
.+. .+++++.|++++|+++|.+|..++++++|++|++++|+++|.+|. ++++++|+.+++++|+
T Consensus 239 ~~~-~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-~~~L~~L~~l~l~~N~ 302 (313)
T d1ogqa_ 239 KVG-LSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNK 302 (313)
T ss_dssp GCC-CCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-STTGGGSCGGGTCSSS
T ss_pred ccc-cccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCC-cccCCCCCHHHhCCCc
Confidence 222 445555555555555555555555555555555555555555543 3444444444444443
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=99.97 E-value=1.1e-30 Score=242.63 Aligned_cols=255 Identities=30% Similarity=0.513 Sum_probs=158.3
Q ss_pred ccCeEEccCCCCCC--CCChhhhcCCCCceeeccC-CcccccCCccccCCcCccEeeeeccccCccCCccccCCCCCCEE
Q 040495 123 MLEGLVLSNNSFSG--TIPTNLSRRSNLIELSVDT-NYLVGEIPSAIGSLFKLERLFIFHNHITGQLPASIGNLSSLLAF 199 (443)
Q Consensus 123 ~L~~L~l~~n~~~~--~~p~~l~~l~~L~~L~l~~-n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 199 (443)
+++.|+++++.+++ .+|..++++++|++|++++ |+++|.+|..++++++|++|++++|.+.+..+..+..
T Consensus 51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~------- 123 (313)
T d1ogqa_ 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQ------- 123 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGG-------
T ss_pred EEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccc-------
Confidence 56777777777765 3566777777777777765 5666666666666666666666666666554444443
Q ss_pred EccCCcCCcccccccCCCCCCEEEcccccCCCCCCccccCCCCCcEEEcccCcCcccCChhhhcCCCC-CcEEeCCCCcC
Q 040495 200 DVRENILWGRIDSLVQLRNLRLLDIAFNHFSGMIPPPIFNISSLEVISLSENRFTGSLPVDAGVNLPN-LRQLSPNGNNF 278 (443)
Q Consensus 200 ~l~~n~l~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~-L~~L~L~~n~l 278 (443)
+.+|+.+++++|.+.+.+|..+.++++++++++++|.+++.+|..+. .+.. ++.+++++|++
T Consensus 124 ----------------~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~-~l~~l~~~l~~~~n~l 186 (313)
T d1ogqa_ 124 ----------------IKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYG-SFSKLFTSMTISRNRL 186 (313)
T ss_dssp ----------------CTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGG-CCCTTCCEEECCSSEE
T ss_pred ----------------hhhhcccccccccccccCchhhccCcccceeeccccccccccccccc-cccccccccccccccc
Confidence 44555566666666666677777777777777777777767776655 3433 36666666666
Q ss_pred CccCCccCcCCCCCCEEecccCcCccccchhhhCCCCCCEEEccCCCCcccCCCchhhHhhhcCCCCCCEEEccCCcCcc
Q 040495 279 TGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQG 358 (443)
Q Consensus 279 ~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 358 (443)
++..|..+..+.. ..+++.++...+.+|..+..++ +++.+++++|.+.+
T Consensus 187 ~~~~~~~~~~l~~-~~l~l~~~~~~~~~~~~~~~~~------------------------------~l~~l~~~~~~l~~ 235 (313)
T d1ogqa_ 187 TGKIPPTFANLNL-AFVDLSRNMLEGDASVLFGSDK------------------------------NTQKIHLAKNSLAF 235 (313)
T ss_dssp EEECCGGGGGCCC-SEEECCSSEEEECCGGGCCTTS------------------------------CCSEEECCSSEECC
T ss_pred ccccccccccccc-cccccccccccccccccccccc------------------------------cccccccccccccc
Confidence 6666655555433 3466666666555555444444 44445555555444
Q ss_pred cCChhHhhhccCCCEEeccCCcCeecCchhhhcCCCCCeEeCcCCcCcccCchhhcCCCCCCEEEccCCc-Cccc-CCc
Q 040495 359 VLPQSMANFSSTIKQIAMGRNRISGTIPPGIRSHANLNWLTMDSNLFTGTIPPVIGELKNLQLLDLGGNF-LQGS-IPS 435 (443)
Q Consensus 359 ~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~-l~~~-~p~ 435 (443)
.+| .+.. .++++.|++++|+++|.+|.+++.+++|++|+|++|+++|.+|+ ++++++|+.+++++|+ ++|. +|.
T Consensus 236 ~~~-~~~~-~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-~~~L~~L~~l~l~~N~~l~g~plp~ 311 (313)
T d1ogqa_ 236 DLG-KVGL-SKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNKCLCGSPLPA 311 (313)
T ss_dssp BGG-GCCC-CTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-STTGGGSCGGGTCSSSEEESTTSSC
T ss_pred ccc-cccc-ccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCC-cccCCCCCHHHhCCCccccCCCCCC
Confidence 333 2222 25666777777777767777777777777777777777777764 4566677777777775 4543 553
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=99.96 E-value=3.7e-27 Score=224.71 Aligned_cols=321 Identities=24% Similarity=0.369 Sum_probs=229.2
Q ss_pred CcEEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCCCCCchhhcCCCccCeEEccCCCCCCCCChhhhcCCCCceeec
Q 040495 74 QRVTRLDLRNQSIGGPLSPYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSV 153 (443)
Q Consensus 74 ~~v~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l 153 (443)
..+++|++++++++.. +.+..+++|++|++++|.+++ ++ .++++++|++|++++|.+++. + .++.+++|+.|++
T Consensus 44 ~~l~~L~l~~~~I~~l--~gl~~L~nL~~L~Ls~N~l~~-l~-~l~~L~~L~~L~L~~n~i~~i-~-~l~~l~~L~~L~~ 117 (384)
T d2omza2 44 DQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTD-IT-PLKNLTKLVDILMNNNQIADI-T-PLANLTNLTGLTL 117 (384)
T ss_dssp TTCCEEECCSSCCCCC--TTGGGCTTCCEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCCCC-G-GGTTCTTCCEEEC
T ss_pred CCCCEEECCCCCCCCc--cccccCCCCCEEeCcCCcCCC-Cc-cccCCcccccccccccccccc-c-ccccccccccccc
Confidence 4689999999988753 357889999999999999985 44 389999999999999999854 3 3889999999999
Q ss_pred cCCcccccCCccccCCcCccEeeeeccccCccCCc-------------------cccCCCCCCEEEccCCcCCccccccc
Q 040495 154 DTNYLVGEIPSAIGSLFKLERLFIFHNHITGQLPA-------------------SIGNLSSLLAFDVRENILWGRIDSLV 214 (443)
Q Consensus 154 ~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~-------------------~l~~l~~L~~L~l~~n~l~~~~~~l~ 214 (443)
+++.+++..+ ......+.......+.+....+. .+...+.........+... ......
T Consensus 118 ~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 194 (384)
T d2omza2 118 FNNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVS-DISVLA 194 (384)
T ss_dssp CSSCCCCCGG--GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCC-CCGGGG
T ss_pred cccccccccc--ccccccccccccccccccccccccccccccccccccccchhhhhccccccccccccccccc-cccccc
Confidence 9998874432 33445666666666655422111 1122222222222222211 124456
Q ss_pred CCCCCCEEEcccccCCCCCCccccCCCCCcEEEcccCcCcccCChhhhcCCCCCcEEeCCCCcCCccCCccCcCCCCCCE
Q 040495 215 QLRNLRLLDIAFNHFSGMIPPPIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEM 294 (443)
Q Consensus 215 ~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~ 294 (443)
.+++++.+++++|.+++..| ....++|++|++++|.++ .++ .+. .+++|+.+++++|.+++..+ +..+++|++
T Consensus 195 ~l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~-~~~-~l~-~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~ 267 (384)
T d2omza2 195 KLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLK-DIG-TLA-SLTNLTDLDLANNQISNLAP--LSGLTKLTE 267 (384)
T ss_dssp GCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCC-CCG-GGG-GCTTCSEEECCSSCCCCCGG--GTTCTTCSE
T ss_pred cccccceeeccCCccCCCCc--ccccCCCCEEECCCCCCC-Ccc-hhh-cccccchhccccCccCCCCc--ccccccCCE
Confidence 67788888888888775433 455678888888888887 444 233 67888888888888875433 677888888
Q ss_pred EecccCcCccccchhhhCCCCCCEEEccCCCCcccCCCchhhHhhhcCCCCCCEEEccCCcCcccCChhHhhhccCCCEE
Q 040495 295 IEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQI 374 (443)
Q Consensus 295 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L 374 (443)
|+++++++++..+ +..++.++.++++.|.+.+.. .+..++++++|++++|++++. +. +.. +++|+.|
T Consensus 268 L~l~~~~l~~~~~--~~~~~~l~~l~~~~n~l~~~~--------~~~~~~~l~~L~ls~n~l~~l-~~-l~~-l~~L~~L 334 (384)
T d2omza2 268 LKLGANQISNISP--LAGLTALTNLELNENQLEDIS--------PISNLKNLTYLTLYFNNISDI-SP-VSS-LTKLQRL 334 (384)
T ss_dssp EECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCG--------GGGGCTTCSEEECCSSCCSCC-GG-GGG-CTTCCEE
T ss_pred eeccCcccCCCCc--ccccccccccccccccccccc--------ccchhcccCeEECCCCCCCCC-cc-ccc-CCCCCEE
Confidence 8888888875433 667888888888888877642 367778888888888888853 32 444 4788888
Q ss_pred eccCCcCeecCchhhhcCCCCCeEeCcCCcCcccCchhhcCCCCCCEEEccCC
Q 040495 375 AMGRNRISGTIPPGIRSHANLNWLTMDSNLFTGTIPPVIGELKNLQLLDLGGN 427 (443)
Q Consensus 375 ~L~~n~l~~~~p~~l~~~~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n 427 (443)
++++|++++ ++ .+..+++|++|++++|++++..| +.++++|+.|+|++|
T Consensus 335 ~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~N 383 (384)
T d2omza2 335 FFANNKVSD-VS-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383 (384)
T ss_dssp ECCSSCCCC-CG-GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred ECCCCCCCC-Ch-hHcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeCCCC
Confidence 888888874 44 57888888888888888885443 778888888888887
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=99.96 E-value=1.2e-26 Score=221.11 Aligned_cols=327 Identities=25% Similarity=0.388 Sum_probs=247.9
Q ss_pred cCCCCCcccccccccCCCCCCEEeCCCCcCCCCCchhhcCCCccCeEEccCCCCCCCCChhhhcCCCCceeeccCCcccc
Q 040495 81 LRNQSIGGPLSPYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSVDTNYLVG 160 (443)
Q Consensus 81 l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~ 160 (443)
+....+++.+. ...+.+|++|++++++++. + +.+..+++|++|++++|.+++ +|. ++++++|++|++++|++.+
T Consensus 29 l~~~~~~~~~~--~~~l~~l~~L~l~~~~I~~-l-~gl~~L~nL~~L~Ls~N~l~~-l~~-l~~L~~L~~L~L~~n~i~~ 102 (384)
T d2omza2 29 LGKTNVTDTVS--QTDLDQVTTLQADRLGIKS-I-DGVEYLNNLTQINFSNNQLTD-ITP-LKNLTKLVDILMNNNQIAD 102 (384)
T ss_dssp TTCSSTTSEEC--HHHHTTCCEEECCSSCCCC-C-TTGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCC
T ss_pred hCCCCCCCccC--HHHhCCCCEEECCCCCCCC-c-cccccCCCCCEEeCcCCcCCC-Ccc-ccCCccccccccccccccc
Confidence 33444444333 3467889999999999874 4 458899999999999999985 443 8999999999999999984
Q ss_pred cCCccccCCcCccEeeeeccccCccCCccccCCCCCCEEEccCCcCCccc--------------------ccccCCCCCC
Q 040495 161 EIPSAIGSLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRI--------------------DSLVQLRNLR 220 (443)
Q Consensus 161 ~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~--------------------~~l~~l~~L~ 220 (443)
. + .++.+++|+.++++++.+++..+ ......+.......+.+.... ..+.......
T Consensus 103 i-~-~l~~l~~L~~L~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (384)
T d2omza2 103 I-T-PLANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLE 178 (384)
T ss_dssp C-G-GGTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCC
T ss_pred c-c-ccccccccccccccccccccccc--ccccccccccccccccccccccccccccccccccccccchhhhhccccccc
Confidence 3 3 37899999999999998875432 334456666665554332211 1222233333
Q ss_pred EEEcccccCCCCCCccccCCCCCcEEEcccCcCcccCChhhhcCCCCCcEEeCCCCcCCccCCccCcCCCCCCEEecccC
Q 040495 221 LLDIAFNHFSGMIPPPIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRN 300 (443)
Q Consensus 221 ~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n 300 (443)
......+.. ........+++++.+++++|.+++..|. . ..++|++|++++|.+++ + ..+..+++|+.+++++|
T Consensus 179 ~~~~~~~~~--~~~~~~~~l~~~~~l~l~~n~i~~~~~~--~-~~~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~l~~n 251 (384)
T d2omza2 179 RLDISSNKV--SDISVLAKLTNLESLIATNNQISDITPL--G-ILTNLDELSLNGNQLKD-I-GTLASLTNLTDLDLANN 251 (384)
T ss_dssp EEECCSSCC--CCCGGGGGCTTCSEEECCSSCCCCCGGG--G-GCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSS
T ss_pred ccccccccc--ccccccccccccceeeccCCccCCCCcc--c-ccCCCCEEECCCCCCCC-c-chhhcccccchhccccC
Confidence 344443333 2345567789999999999999854442 2 57899999999999984 3 36788999999999999
Q ss_pred cCccccchhhhCCCCCCEEEccCCCCcccCCCchhhHhhhcCCCCCCEEEccCCcCcccCChhHhhhccCCCEEeccCCc
Q 040495 301 QFSGRVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNR 380 (443)
Q Consensus 301 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~ 380 (443)
.+++..+ +..+++|+.++++++.+++..+ +..+..++.+++++|.+++ ++ .+.. .++++.+++++|+
T Consensus 252 ~l~~~~~--~~~~~~L~~L~l~~~~l~~~~~--------~~~~~~l~~l~~~~n~l~~-~~-~~~~-~~~l~~L~ls~n~ 318 (384)
T d2omza2 252 QISNLAP--LSGLTKLTELKLGANQISNISP--------LAGLTALTNLELNENQLED-IS-PISN-LKNLTYLTLYFNN 318 (384)
T ss_dssp CCCCCGG--GTTCTTCSEEECCSSCCCCCGG--------GTTCTTCSEEECCSSCCSC-CG-GGGG-CTTCSEEECCSSC
T ss_pred ccCCCCc--ccccccCCEeeccCcccCCCCc--------ccccccccccccccccccc-cc-ccch-hcccCeEECCCCC
Confidence 9987544 7889999999999999987644 7788999999999999985 33 3444 4899999999999
Q ss_pred CeecCchhhhcCCCCCeEeCcCCcCcccCchhhcCCCCCCEEEccCCcCcccCCccccCCCCC
Q 040495 381 ISGTIPPGIRSHANLNWLTMDSNLFTGTIPPVIGELKNLQLLDLGGNFLQGSIPSSLGNLTLL 443 (443)
Q Consensus 381 l~~~~p~~l~~~~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~L 443 (443)
+++. + .+..+++|++|++++|+++ .++ .+.++++|++|++++|++++..| +.+++.|
T Consensus 319 l~~l-~-~l~~l~~L~~L~L~~n~l~-~l~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L 375 (384)
T d2omza2 319 ISDI-S-PVSSLTKLQRLFFANNKVS-DVS-SLANLTNINWLSAGHNQISDLTP--LANLTRI 375 (384)
T ss_dssp CSCC-G-GGGGCTTCCEEECCSSCCC-CCG-GGGGCTTCCEEECCSSCCCBCGG--GTTCTTC
T ss_pred CCCC-c-ccccCCCCCEEECCCCCCC-CCh-hHcCCCCCCEEECCCCcCCCChh--hccCCCC
Confidence 9964 3 3889999999999999998 455 58999999999999999996554 6666544
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.95 E-value=7.5e-26 Score=208.82 Aligned_cols=273 Identities=20% Similarity=0.234 Sum_probs=171.5
Q ss_pred CCCccceeeCCCCCcEEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCCCCCchhhcCCCccCeEEccCCCCCCCCCh
Q 040495 61 LCQWTGVTCGRRHQRVTRLDLRNQSIGGPLSPYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPT 140 (443)
Q Consensus 61 ~c~w~gv~c~~~~~~v~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~ 140 (443)
.|.|..+.|.. .+++ .+|..+ .+++++|++++|.++...+..|.++++|++|++++|.+....|.
T Consensus 9 ~c~~~~~~C~~------------~~L~-~lP~~l--~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~ 73 (305)
T d1xkua_ 9 QCHLRVVQCSD------------LGLE-KVPKDL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPG 73 (305)
T ss_dssp EEETTEEECTT------------SCCC-SCCCSC--CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTT
T ss_pred EecCCEEEecC------------CCCC-ccCCCC--CCCCCEEECcCCcCCCcChhHhhccccccccccccccccccchh
Confidence 35677676653 3343 345444 26899999999999855556789999999999999999977788
Q ss_pred hhhcCCCCceeeccCCcccccCCccccCCcCccEeeeeccccCccCCccccCCCCCCEEEccCCcCCccc---ccccCCC
Q 040495 141 NLSRRSNLIELSVDTNYLVGEIPSAIGSLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRI---DSLVQLR 217 (443)
Q Consensus 141 ~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~---~~l~~l~ 217 (443)
.|.++++|++|++++|+++ .+|..+ ...++.|.+.+|.+.+..+..+.....+..++...+...... ..+..++
T Consensus 74 ~f~~l~~L~~L~l~~n~l~-~l~~~~--~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~ 150 (305)
T d1xkua_ 74 AFAPLVKLERLYLSKNQLK-ELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMK 150 (305)
T ss_dssp TTTTCTTCCEEECCSSCCS-BCCSSC--CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCT
T ss_pred hhhCCCccCEecccCCccC-cCccch--hhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCcccccccc
Confidence 8999999999999999988 566543 457888888888888665555666777777777666433222 3455566
Q ss_pred CCCEEEcccccCCCCCCccccCCCCCcEEEcccCcCcccCChhhhcCCCCCcEEeCCCCcCCccCCccCcCCCCCCEEec
Q 040495 218 NLRLLDIAFNHFSGMIPPPIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEF 297 (443)
Q Consensus 218 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l 297 (443)
+|+.+++++|.+.. +|..+ .++|++|++++|..++..+..+. .++.+++|++++|++++..+..+..+++|++|++
T Consensus 151 ~L~~l~l~~n~l~~-l~~~~--~~~L~~L~l~~n~~~~~~~~~~~-~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L 226 (305)
T d1xkua_ 151 KLSYIRIADTNITT-IPQGL--PPSLTELHLDGNKITKVDAASLK-GLNNLAKLGLSFNSISAVDNGSLANTPHLRELHL 226 (305)
T ss_dssp TCCEEECCSSCCCS-CCSSC--CTTCSEEECTTSCCCEECTGGGT-TCTTCCEEECCSSCCCEECTTTGGGSTTCCEEEC
T ss_pred ccCccccccCCccc-cCccc--CCccCEEECCCCcCCCCChhHhh-ccccccccccccccccccccccccccccceeeec
Confidence 66666666666542 23222 35566666666665544443332 5556666666666665555555555666666666
Q ss_pred ccCcCccccchhhhCCCCCCEEEccCCCCcccCCCchhhHhhhcCCCCCCEEEccCCcC
Q 040495 298 SRNQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRF 356 (443)
Q Consensus 298 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l 356 (443)
++|+++. +|..+..+++|++|++++|+++......+..........+|+.|++++|++
T Consensus 227 ~~N~L~~-lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~ 284 (305)
T d1xkua_ 227 NNNKLVK-VPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV 284 (305)
T ss_dssp CSSCCSS-CCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSS
T ss_pred ccccccc-cccccccccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcC
Confidence 6666553 344555566666666666655544332222112233344455555555544
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.94 E-value=9.8e-25 Score=201.22 Aligned_cols=242 Identities=22% Similarity=0.314 Sum_probs=159.1
Q ss_pred CCCEEeCCCCcCCCCCchhhcCCCccCeEEccCCCCCCCCChhhhcCCCCceeeccCCcccccCCccccCCcCccEeeee
Q 040495 99 FLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSVDTNYLVGEIPSAIGSLFKLERLFIF 178 (443)
Q Consensus 99 ~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~ 178 (443)
..+.++-++++++ .+|..+. +.+++|++++|.++...+..|.++++|++|++++|.+....|..|.++++|++|+++
T Consensus 11 ~~~~~~C~~~~L~-~lP~~l~--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~ 87 (305)
T d1xkua_ 11 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 87 (305)
T ss_dssp ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred cCCEEEecCCCCC-ccCCCCC--CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEeccc
Confidence 5677888888777 6676653 578899999998885445578888999999999998886667788888999999999
Q ss_pred ccccCccCCccccCCCCCCEEEccCCcCCccc-ccccCCCCCCEEEcccccCC--CCCCccccCCCCCcEEEcccCcCcc
Q 040495 179 HNHITGQLPASIGNLSSLLAFDVRENILWGRI-DSLVQLRNLRLLDIAFNHFS--GMIPPPIFNISSLEVISLSENRFTG 255 (443)
Q Consensus 179 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~-~~l~~l~~L~~L~l~~n~~~--~~~~~~l~~l~~L~~L~l~~n~l~~ 255 (443)
+|+++ .+|..+ ...++.+++..|.+.... ..+........++...+... ...+..+..+++|+.+++.+|.++
T Consensus 88 ~n~l~-~l~~~~--~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~- 163 (305)
T d1xkua_ 88 KNQLK-ELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT- 163 (305)
T ss_dssp SSCCS-BCCSSC--CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-
T ss_pred CCccC-cCccch--hhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCcc-
Confidence 98887 455432 356777887777776655 44555566666666665432 223344556666666666666665
Q ss_pred cCChhhhcCCCCCcEEeCCCCcCCccCCccCcCCCCCCEEecccCcCccccchhhhCCCCCCEEEccCCCCcccCCCchh
Q 040495 256 SLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANELD 335 (443)
Q Consensus 256 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 335 (443)
.+|.. .++++++|++++|...+..+..+..++.+++|++++|++++..+..+..+++|++|++++|.++.. +
T Consensus 164 ~l~~~---~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~~l-p---- 235 (305)
T d1xkua_ 164 TIPQG---LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKV-P---- 235 (305)
T ss_dssp SCCSS---CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSC-C----
T ss_pred ccCcc---cCCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeeccccccccc-c----
Confidence 44433 245666666666666655555666666666666666666655555555566666666666655543 2
Q ss_pred hHhhhcCCCCCCEEEccCCcCc
Q 040495 336 FINLLANCSKLERLYFNRNRFQ 357 (443)
Q Consensus 336 ~~~~~~~~~~L~~L~l~~n~l~ 357 (443)
..+..+++|++|++++|+++
T Consensus 236 --~~l~~l~~L~~L~Ls~N~i~ 255 (305)
T d1xkua_ 236 --GGLADHKYIQVVYLHNNNIS 255 (305)
T ss_dssp --TTTTTCSSCCEEECCSSCCC
T ss_pred --cccccccCCCEEECCCCccC
Confidence 23455555555555555555
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=1.8e-24 Score=197.28 Aligned_cols=222 Identities=22% Similarity=0.251 Sum_probs=116.0
Q ss_pred EeCCCCcCCCCCchhhcCCCccCeEEccCCCCCCCCChhhhcCCCCceeeccCCcccccCCccccCCcCccEeeee-ccc
Q 040495 103 INLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSVDTNYLVGEIPSAIGSLFKLERLFIF-HNH 181 (443)
Q Consensus 103 L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~-~n~ 181 (443)
++.++++++ .+|..+. +.+++|++++|.++...+..|.++++|++|++++|.+....+..+..+..++.+... .+.
T Consensus 16 v~c~~~~L~-~iP~~ip--~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~ 92 (284)
T d1ozna_ 16 TSCPQQGLQ-AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92 (284)
T ss_dssp EECCSSCCS-SCCTTCC--TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTT
T ss_pred EEcCCCCCC-ccCCCCC--CCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccc
Confidence 344555544 4454332 345666666666654444455566666666666665554444444444555554433 223
Q ss_pred cCccCCccccCCCCCCEEEccCCcCCcccccccCCCCCCEEEcccccCCCCCCccccCCCCCcEEEcccCcCcccCChhh
Q 040495 182 ITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLRLLDIAFNHFSGMIPPPIFNISSLEVISLSENRFTGSLPVDA 261 (443)
Q Consensus 182 l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~ 261 (443)
++...+.. +..+++|++|++++|.+....+..+....+|+.+++++|.++ .+|...
T Consensus 93 ~~~l~~~~-----------------------~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~-~i~~~~ 148 (284)
T d1ozna_ 93 LRSVDPAT-----------------------FHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ-ALPDDT 148 (284)
T ss_dssp CCCCCTTT-----------------------TTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTT
T ss_pred cccccchh-----------------------hcccccCCEEecCCcccccccccccchhcccchhhhcccccc-ccChhH
Confidence 33222333 333444444444444444333344444555555555555554 344333
Q ss_pred hcCCCCCcEEeCCCCcCCccCCccCcCCCCCCEEecccCcCccccchhhhCCCCCCEEEccCCCCcccCCCchhhHhhhc
Q 040495 262 GVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLA 341 (443)
Q Consensus 262 ~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~ 341 (443)
+..+++|++|++++|++++..+..+.++++|+.+++++|++++..|..|..+++|++|++++|.+.+..+ ..+.
T Consensus 149 f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~------~~~~ 222 (284)
T d1ozna_ 149 FRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPT------EALA 222 (284)
T ss_dssp TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCH------HHHT
T ss_pred hccccchhhcccccCcccccchhhhccccccchhhhhhccccccChhHhhhhhhcccccccccccccccc------cccc
Confidence 3345555555555555554445555556666666666666665555555556666666666665555444 4455
Q ss_pred CCCCCCEEEccCCcCc
Q 040495 342 NCSKLERLYFNRNRFQ 357 (443)
Q Consensus 342 ~~~~L~~L~l~~n~l~ 357 (443)
.+++|++|++++|++.
T Consensus 223 ~~~~L~~L~l~~N~l~ 238 (284)
T d1ozna_ 223 PLRALQYLRLNDNPWV 238 (284)
T ss_dssp TCTTCCEEECCSSCEE
T ss_pred cccccCEEEecCCCCC
Confidence 5566666666666555
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=2.1e-24 Score=196.81 Aligned_cols=225 Identities=18% Similarity=0.159 Sum_probs=174.2
Q ss_pred EEcCCCCCcccccccccCCCCCCEEeCCCCcCCCCCchhhcCCCccCeEEccCCCCCCCCChhhhcCCCCceeecc-CCc
Q 040495 79 LDLRNQSIGGPLSPYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSVD-TNY 157 (443)
Q Consensus 79 L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~-~n~ 157 (443)
++.++.+++ .+|..+. +.+++|+|++|.++...+.+|.++++|++|++++|.+....+..+..++.++.+... .+.
T Consensus 16 v~c~~~~L~-~iP~~ip--~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~ 92 (284)
T d1ozna_ 16 TSCPQQGLQ-AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92 (284)
T ss_dssp EECCSSCCS-SCCTTCC--TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTT
T ss_pred EEcCCCCCC-ccCCCCC--CCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccc
Confidence 355566655 3454332 578999999999986666789999999999999999998888888889999998765 455
Q ss_pred ccccCCccccCCcCccEeeeeccccCccCCccccCCCCCCEEEccCCcCCcccccccCCCCCCEEEcccccCCCCCCccc
Q 040495 158 LVGEIPSAIGSLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLRLLDIAFNHFSGMIPPPI 237 (443)
Q Consensus 158 l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l 237 (443)
+....+..+.++++|++|++++|.+....+..+... ++|+.+++++|.+++..+..+
T Consensus 93 ~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~-----------------------~~L~~l~l~~N~l~~i~~~~f 149 (284)
T d1ozna_ 93 LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGL-----------------------AALQYLYLQDNALQALPDDTF 149 (284)
T ss_dssp CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTC-----------------------TTCCEEECCSSCCCCCCTTTT
T ss_pred cccccchhhcccccCCEEecCCcccccccccccchh-----------------------cccchhhhccccccccChhHh
Confidence 665567788999999999999998875544444444 445555555666654445566
Q ss_pred cCCCCCcEEEcccCcCcccCChhhhcCCCCCcEEeCCCCcCCccCCccCcCCCCCCEEecccCcCccccchhhhCCCCCC
Q 040495 238 FNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLS 317 (443)
Q Consensus 238 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 317 (443)
..+++|++|++++|.++ .++...+.++++|+.+++++|++++..|..|..+++|++|++++|++.+..+..|+.+++|+
T Consensus 150 ~~~~~L~~L~l~~N~l~-~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~ 228 (284)
T d1ozna_ 150 RDLGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQ 228 (284)
T ss_dssp TTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCC
T ss_pred ccccchhhcccccCccc-ccchhhhccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccC
Confidence 67777788888888776 55555555788888888888888877888888888999999999999888888888899999
Q ss_pred EEEccCCCCcccC
Q 040495 318 FLNMGINNLGTRT 330 (443)
Q Consensus 318 ~L~l~~n~l~~~~ 330 (443)
+|++++|.+...-
T Consensus 229 ~L~l~~N~l~C~C 241 (284)
T d1ozna_ 229 YLRLNDNPWVCDC 241 (284)
T ss_dssp EEECCSSCEECSG
T ss_pred EEEecCCCCCCCc
Confidence 9999999887653
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.89 E-value=2.4e-22 Score=181.11 Aligned_cols=196 Identities=19% Similarity=0.271 Sum_probs=93.6
Q ss_pred CCEEEcccccCCCCCCccccCCCCCcEEEcccCcCcccCChhhhcCCCCCcEEeCCCCcCCccCCccCcCCCCCCEEecc
Q 040495 219 LRLLDIAFNHFSGMIPPPIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFS 298 (443)
Q Consensus 219 L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~ 298 (443)
+.+++.+++.++ .+|..+. +++++|++++|.++ .+|...+.++++|++|++++|+++ .++ .++.+++|++|+++
T Consensus 12 ~~~v~C~~~~L~-~iP~~lp--~~l~~L~Ls~N~i~-~l~~~~f~~l~~L~~L~L~~N~l~-~l~-~~~~l~~L~~L~Ls 85 (266)
T d1p9ag_ 12 HLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLY-TFSLATLMPYTRLTQLNLDRAELT-KLQ-VDGTLPVLGTLDLS 85 (266)
T ss_dssp CCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCS-EEEGGGGTTCTTCCEEECTTSCCC-EEE-CCSCCTTCCEEECC
T ss_pred CeEEEccCCCCC-eeCcCcC--cCCCEEECcCCcCC-CcCHHHhhcccccccccccccccc-ccc-cccccccccccccc
Confidence 333444444444 2333332 24455555555554 333333334555555555555554 222 23444555555555
Q ss_pred cCcCccccchhhhCCCCCCEEEccCCCCcccCCCchhhHhhhcCCCCCCEEEccCCcCcccCChhHhhhccCCCEEeccC
Q 040495 299 RNQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGR 378 (443)
Q Consensus 299 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~L~~ 378 (443)
+|++++. +..+..+++|+.|++++|.+....+ ..+..+.++++|++++|.++ .+|.......+.++.+++++
T Consensus 86 ~N~l~~~-~~~~~~l~~L~~L~l~~~~~~~~~~------~~~~~l~~l~~L~l~~n~l~-~l~~~~~~~l~~l~~l~l~~ 157 (266)
T d1p9ag_ 86 HNQLQSL-PLLGQTLPALTVLDVSFNRLTSLPL------GALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLAN 157 (266)
T ss_dssp SSCCSSC-CCCTTTCTTCCEEECCSSCCCCCCS------STTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECTT
T ss_pred ccccccc-ccccccccccccccccccccceeec------cccccccccccccccccccc-eeccccccccccchhccccc
Confidence 5555432 3334455555555555555544433 33444555555555555555 33332222234555555555
Q ss_pred CcCeecCchhhhcCCCCCeEeCcCCcCcccCchhhcCCCCCCEEEccCCcC
Q 040495 379 NRISGTIPPGIRSHANLNWLTMDSNLFTGTIPPVIGELKNLQLLDLGGNFL 429 (443)
Q Consensus 379 n~l~~~~p~~l~~~~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l 429 (443)
|++++..+..+..+++|++|+|++|+++ .+|+.+..+++|+.|+|++|++
T Consensus 158 N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~ 207 (266)
T d1p9ag_ 158 NNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207 (266)
T ss_dssp SCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCB
T ss_pred ccccccCccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCC
Confidence 5555444444555555555555555555 5555555555555555555544
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.89 E-value=5.4e-22 Score=178.77 Aligned_cols=133 Identities=23% Similarity=0.235 Sum_probs=65.7
Q ss_pred CCCCCEEEccCCcCCcccccccCCCCCCEEEcccccCCCCCCccccCCCCCcEEEcccCcCcccCChhhhcCCCCCcEEe
Q 040495 193 LSSLLAFDVRENILWGRIDSLVQLRNLRLLDIAFNHFSGMIPPPIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLS 272 (443)
Q Consensus 193 l~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ 272 (443)
+++|++|++++|.+......+..+++|+.|++++|.+....+..+..+.++++|++++|.++ .+|...+..+++++.++
T Consensus 76 l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~-~l~~~~~~~l~~l~~l~ 154 (266)
T d1p9ag_ 76 LPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLS 154 (266)
T ss_dssp CTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEE
T ss_pred cccccccccccccccccccccccccccccccccccccceeeccccccccccccccccccccc-eeccccccccccchhcc
Confidence 33344444443333333333344445555555555554444444445555555555555554 44444443455555555
Q ss_pred CCCCcCCccCCccCcCCCCCCEEecccCcCccccchhhhCCCCCCEEEccCCCCc
Q 040495 273 PNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLG 327 (443)
Q Consensus 273 L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 327 (443)
+++|++++..+..+..+++|++|++++|+++ .+|..+..+++|+.|++++|.+.
T Consensus 155 l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~ 208 (266)
T d1p9ag_ 155 LANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208 (266)
T ss_dssp CTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred cccccccccCccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCCC
Confidence 5555555444444555555555555555555 34444444555555555555443
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=99.85 E-value=1e-18 Score=163.42 Aligned_cols=309 Identities=22% Similarity=0.276 Sum_probs=211.2
Q ss_pred cEEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCCCCCchhhcCCCccCeEEccCCCCCCCCChhhhcCCCCceeecc
Q 040495 75 RVTRLDLRNQSIGGPLSPYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSVD 154 (443)
Q Consensus 75 ~v~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~ 154 (443)
++++||+++++++. +|+. .++|++|++++|.++ .+|+. ..+|+.|++++|.++ .++.. .+.|++|+++
T Consensus 39 ~l~~LdLs~~~L~~-lp~~---~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~l~~n~l~-~l~~l---p~~L~~L~L~ 106 (353)
T d1jl5a_ 39 QAHELELNNLGLSS-LPEL---PPHLESLVASCNSLT-ELPEL---PQSLKSLLVDNNNLK-ALSDL---PPLLEYLGVS 106 (353)
T ss_dssp TCSEEECTTSCCSC-CCSC---CTTCSEEECCSSCCS-SCCCC---CTTCCEEECCSSCCS-CCCSC---CTTCCEEECC
T ss_pred CCCEEEeCCCCCCC-CCCC---CCCCCEEECCCCCCc-ccccc---hhhhhhhhhhhcccc-hhhhh---cccccccccc
Confidence 57799999999864 6643 578999999999998 77764 457889999999887 44431 2469999999
Q ss_pred CCcccccCCccccCCcCccEeeeeccccCccCCccccCCCCCCEEEccCCcCCcccccccCCCCCCEEEcccccCCCCCC
Q 040495 155 TNYLVGEIPSAIGSLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLRLLDIAFNHFSGMIP 234 (443)
Q Consensus 155 ~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~~~~~~~ 234 (443)
+|.+. .+|. ++.+++|++++++++.+.. .+. ....+..+.+..+.... ...+..++.++.+++++|..... +
T Consensus 107 ~n~l~-~lp~-~~~l~~L~~L~l~~~~~~~-~~~---~~~~l~~l~~~~~~~~~-~~~l~~l~~l~~L~l~~n~~~~~-~ 178 (353)
T d1jl5a_ 107 NNQLE-KLPE-LQNSSFLKIIDVDNNSLKK-LPD---LPPSLEFIAAGNNQLEE-LPELQNLPFLTAIYADNNSLKKL-P 178 (353)
T ss_dssp SSCCS-SCCC-CTTCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSS-CCCCTTCTTCCEEECCSSCCSSC-C
T ss_pred ccccc-cccc-hhhhccceeeccccccccc-ccc---ccccccchhhccccccc-cccccccccceeccccccccccc-c
Confidence 99987 5664 5788999999999988773 332 24566677766554332 24566778888899988876532 2
Q ss_pred ccccCCCCCcEEEcccCcCcccCChhhhcCCCCCcEEeCCCCcCCccCCccCcCCCCCCEEecccCcCccccchhhhCCC
Q 040495 235 PPIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLK 314 (443)
Q Consensus 235 ~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~ 314 (443)
. .....+.+...++.+. .++.. . .++.++.+++++|... .++. ...++..+.+.++.+.... ...+
T Consensus 179 ~---~~~~~~~l~~~~~~~~-~~~~~-~-~l~~L~~l~l~~n~~~-~~~~---~~~~l~~~~~~~~~~~~~~----~~~~ 244 (353)
T d1jl5a_ 179 D---LPLSLESIVAGNNILE-ELPEL-Q-NLPFLTTIYADNNLLK-TLPD---LPPSLEALNVRDNYLTDLP----ELPQ 244 (353)
T ss_dssp C---CCTTCCEEECCSSCCS-SCCCC-T-TCTTCCEEECCSSCCS-SCCS---CCTTCCEEECCSSCCSCCC----CCCT
T ss_pred c---cccccccccccccccc-ccccc-c-cccccccccccccccc-cccc---ccccccccccccccccccc----cccc
Confidence 1 1223456666666554 44432 2 5788999999988766 3343 3456788888888776432 2245
Q ss_pred CCCEEEccCCCCcccCCCchhhHhhhcCCCCCCEEEccCCcCcccCChhHhhhccCCCEEeccCCcCeecCchhhhcCCC
Q 040495 315 NLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNRISGTIPPGIRSHAN 394 (443)
Q Consensus 315 ~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~ 394 (443)
.+...++..+.+.+... -.......++..+.+.+ ++ ..+++|++|++++|+++ .+|.. +++
T Consensus 245 ~l~~~~~~~~~~~~l~~----------l~~~~~~~~~~~~~~~~-~~----~~~~~L~~L~Ls~N~l~-~lp~~---~~~ 305 (353)
T d1jl5a_ 245 SLTFLDVSENIFSGLSE----------LPPNLYYLNASSNEIRS-LC----DLPPSLEELNVSNNKLI-ELPAL---PPR 305 (353)
T ss_dssp TCCEEECCSSCCSEESC----------CCTTCCEEECCSSCCSE-EC----CCCTTCCEEECCSSCCS-CCCCC---CTT
T ss_pred ccccccccccccccccc----------ccchhcccccccCcccc-cc----ccCCCCCEEECCCCccC-ccccc---cCC
Confidence 66777777666554322 11345666777776663 22 22478999999999888 67743 567
Q ss_pred CCeEeCcCCcCcccCchhhcCCCCCCEEEccCCcCcccCCccccCCC
Q 040495 395 LNWLTMDSNLFTGTIPPVIGELKNLQLLDLGGNFLQGSIPSSLGNLT 441 (443)
Q Consensus 395 L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~ 441 (443)
|++|+|++|+++ .+|+. +++|++|++++|+++ .+|+....+.
T Consensus 306 L~~L~L~~N~L~-~l~~~---~~~L~~L~L~~N~L~-~lp~~~~~L~ 347 (353)
T d1jl5a_ 306 LERLIASFNHLA-EVPEL---PQNLKQLHVEYNPLR-EFPDIPESVE 347 (353)
T ss_dssp CCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-SCCCCCTTCC
T ss_pred CCEEECCCCcCC-ccccc---cCCCCEEECcCCcCC-CCCccccccC
Confidence 889999999988 67753 467899999999987 6665444443
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.85 E-value=9.8e-23 Score=198.07 Aligned_cols=362 Identities=15% Similarity=0.132 Sum_probs=235.3
Q ss_pred CcEEEEEcCCCCCccc-ccccccCCCCCCEEeCCCCcCCC----CCchhhcCCCccCeEEccCCCCCCCCChhhh-----
Q 040495 74 QRVTRLDLRNQSIGGP-LSPYVGNLSFLRYINLANNGFLG----EIPPQIGRLNMLEGLVLSNNSFSGTIPTNLS----- 143 (443)
Q Consensus 74 ~~v~~L~l~~~~~~~~-~~~~~~~l~~L~~L~L~~n~~~~----~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~----- 143 (443)
.+++.||++++++++. +...+..++++++|+|++|+++. .+...+..+++|++|++++|.++......+.
T Consensus 2 ~~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~ 81 (460)
T d1z7xw1 2 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 81 (460)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred CCCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhc
Confidence 3689999999999864 34456678999999999999874 3456678899999999999988632222222
Q ss_pred cCCCCceeeccCCccccc----CCccccCCcCccEeeeeccccCccCCcc------------------------------
Q 040495 144 RRSNLIELSVDTNYLVGE----IPSAIGSLFKLERLFIFHNHITGQLPAS------------------------------ 189 (443)
Q Consensus 144 ~l~~L~~L~l~~n~l~~~----~p~~l~~l~~L~~L~l~~n~l~~~~~~~------------------------------ 189 (443)
...+|++|++++|+++.. ++..+..+++|++|++++|.++......
T Consensus 82 ~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (460)
T d1z7xw1 82 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL 161 (460)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred CCCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccchhhhccc
Confidence 235799999999998743 4556788899999999999875321111
Q ss_pred ---ccCCCCCCEEEccCCcCCccc-----ccc-cCCCCCCEEEcccccCCCC----CCccccCCCCCcEEEcccCcCccc
Q 040495 190 ---IGNLSSLLAFDVRENILWGRI-----DSL-VQLRNLRLLDIAFNHFSGM----IPPPIFNISSLEVISLSENRFTGS 256 (443)
Q Consensus 190 ---l~~l~~L~~L~l~~n~l~~~~-----~~l-~~l~~L~~L~l~~n~~~~~----~~~~l~~l~~L~~L~l~~n~l~~~ 256 (443)
+.....++.++++.+...... ..+ ........+++..+.+... ....+...+.++.+.+.+|.+...
T Consensus 162 ~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~~~ 241 (460)
T d1z7xw1 162 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV 241 (460)
T ss_dssp HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccchhhhcccccccccccccccchhhcccccc
Confidence 111233444444443322111 001 1112344455554443311 011233456788888888766421
Q ss_pred ----CChhhhcCCCCCcEEeCCCCcCCcc----CCccCcCCCCCCEEecccCcCccccchhh-----hCCCCCCEEEccC
Q 040495 257 ----LPVDAGVNLPNLRQLSPNGNNFTGS----IPVSLSNASRLEMIEFSRNQFSGRVSVDF-----SRLKNLSFLNMGI 323 (443)
Q Consensus 257 ----~~~~~~~~~~~L~~L~L~~n~l~~~----~~~~l~~~~~L~~L~l~~n~l~~~~~~~~-----~~l~~L~~L~l~~ 323 (443)
...........++.+++++|.+... ....+...+.++.+++++|.+++.....+ .....|+.+++++
T Consensus 242 ~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~ 321 (460)
T d1z7xw1 242 GMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKS 321 (460)
T ss_dssp HHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred ccchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhccccccccccccccccc
Confidence 1122223467889999998887643 22345567888999999998875433322 2346799999999
Q ss_pred CCCcccCCCchhhHhhhcCCCCCCEEEccCCcCcccCC----hhHhhhccCCCEEeccCCcCeec----CchhhhcCCCC
Q 040495 324 NNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLP----QSMANFSSTIKQIAMGRNRISGT----IPPGIRSHANL 395 (443)
Q Consensus 324 n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p----~~~~~~~~~L~~L~L~~n~l~~~----~p~~l~~~~~L 395 (443)
+.++...... +...+..+++|++|++++|++++... ..+....+.|++|+|++|.+++. ++..+..+++|
T Consensus 322 ~~l~~~~~~~--l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L 399 (460)
T d1z7xw1 322 CSFTAACCSH--FSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSL 399 (460)
T ss_dssp SCCBGGGHHH--HHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCC
T ss_pred cchhhhhhhh--cccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCC
Confidence 8887654322 22455677889999999999875432 23322235699999999999864 45567778999
Q ss_pred CeEeCcCCcCcccCch----hhc-CCCCCCEEEccCCcCcccCCccc
Q 040495 396 NWLTMDSNLFTGTIPP----VIG-ELKNLQLLDLGGNFLQGSIPSSL 437 (443)
Q Consensus 396 ~~L~L~~n~~~~~~p~----~~~-~l~~L~~L~l~~n~l~~~~p~~~ 437 (443)
++|+|++|+++..... .+. +...|+.|++.+|.+..+.++.+
T Consensus 400 ~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~~~~~~~l 446 (460)
T d1z7xw1 400 RELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRL 446 (460)
T ss_dssp CEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHHHHH
T ss_pred CEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCCCHHHHHHH
Confidence 9999999998754333 333 34579999999999886555433
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=99.83 E-value=5.9e-18 Score=158.17 Aligned_cols=295 Identities=24% Similarity=0.293 Sum_probs=211.8
Q ss_pred CcEEEEEcCCCCCcccccccccCCCCCCEEeCCCCcCCCCCchhhcCCCccCeEEccCCCCCCCCChhhhcCCCCceeec
Q 040495 74 QRVTRLDLRNQSIGGPLSPYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSV 153 (443)
Q Consensus 74 ~~v~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l 153 (443)
.+++.|++++|+++ .+|+. +.+|+.|++++|.++ .++. + .+.|++|++++|.+. .+|. +..+++|++|++
T Consensus 58 ~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~l~~n~l~-~l~~-l--p~~L~~L~L~~n~l~-~lp~-~~~l~~L~~L~l 127 (353)
T d1jl5a_ 58 PHLESLVASCNSLT-ELPEL---PQSLKSLLVDNNNLK-ALSD-L--PPLLEYLGVSNNQLE-KLPE-LQNSSFLKIIDV 127 (353)
T ss_dssp TTCSEEECCSSCCS-SCCCC---CTTCCEEECCSSCCS-CCCS-C--CTTCCEEECCSSCCS-SCCC-CTTCTTCCEEEC
T ss_pred CCCCEEECCCCCCc-ccccc---hhhhhhhhhhhcccc-hhhh-h--ccccccccccccccc-cccc-hhhhccceeecc
Confidence 57899999999997 45654 468999999999887 3432 1 246999999999998 5664 678999999999
Q ss_pred cCCcccccCCccccCCcCccEeeeeccccCccCCccccCCCCCCEEEccCCcCCcccccccCCCCCCEEEcccccCCCCC
Q 040495 154 DTNYLVGEIPSAIGSLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLRLLDIAFNHFSGMI 233 (443)
Q Consensus 154 ~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~~~~~~ 233 (443)
+++.+. ..+.. ...+..+.+..+... .+..+..++.++.+.+.+|........ ....+.+...++.+. .+
T Consensus 128 ~~~~~~-~~~~~---~~~l~~l~~~~~~~~--~~~~l~~l~~l~~L~l~~n~~~~~~~~---~~~~~~l~~~~~~~~-~~ 197 (353)
T d1jl5a_ 128 DNNSLK-KLPDL---PPSLEFIAAGNNQLE--ELPELQNLPFLTAIYADNNSLKKLPDL---PLSLESIVAGNNILE-EL 197 (353)
T ss_dssp CSSCCS-CCCCC---CTTCCEEECCSSCCS--SCCCCTTCTTCCEEECCSSCCSSCCCC---CTTCCEEECCSSCCS-SC
T ss_pred cccccc-ccccc---cccccchhhcccccc--ccccccccccceecccccccccccccc---ccccccccccccccc-cc
Confidence 999887 33332 356777777666554 344577889999999999876654422 123455666655544 23
Q ss_pred CccccCCCCCcEEEcccCcCcccCChhhhcCCCCCcEEeCCCCcCCccCCccCcCCCCCCEEecccCcCccccchhhhCC
Q 040495 234 PPPIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRL 313 (443)
Q Consensus 234 ~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l 313 (443)
..+..++.|+.+++++|... .++. ...++..+.+..+.+.. .+. ....+...++..+.+.+... -.
T Consensus 198 -~~~~~l~~L~~l~l~~n~~~-~~~~----~~~~l~~~~~~~~~~~~-~~~---~~~~l~~~~~~~~~~~~l~~----l~ 263 (353)
T d1jl5a_ 198 -PELQNLPFLTTIYADNNLLK-TLPD----LPPSLEALNVRDNYLTD-LPE---LPQSLTFLDVSENIFSGLSE----LP 263 (353)
T ss_dssp -CCCTTCTTCCEEECCSSCCS-SCCS----CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSEESC----CC
T ss_pred -cccccccccccccccccccc-cccc----ccccccccccccccccc-ccc---cccccccccccccccccccc----cc
Confidence 34667899999999998876 4543 35678899999988763 232 24567777777776654211 11
Q ss_pred CCCCEEEccCCCCcccCCCchhhHhhhcCCCCCCEEEccCCcCcccCChhHhhhccCCCEEeccCCcCeecCchhhhcCC
Q 040495 314 KNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNRISGTIPPGIRSHA 393 (443)
Q Consensus 314 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~ 393 (443)
......++..+.+.+.. ..+++|++|++++|+++ .+|.. .++|+.|++++|+++ .+|.. ++
T Consensus 264 ~~~~~~~~~~~~~~~~~----------~~~~~L~~L~Ls~N~l~-~lp~~----~~~L~~L~L~~N~L~-~l~~~---~~ 324 (353)
T d1jl5a_ 264 PNLYYLNASSNEIRSLC----------DLPPSLEELNVSNNKLI-ELPAL----PPRLERLIASFNHLA-EVPEL---PQ 324 (353)
T ss_dssp TTCCEEECCSSCCSEEC----------CCCTTCCEEECCSSCCS-CCCCC----CTTCCEEECCSSCCS-CCCCC---CT
T ss_pred chhcccccccCcccccc----------ccCCCCCEEECCCCccC-ccccc----cCCCCEEECCCCcCC-ccccc---cC
Confidence 34566777777666543 24678999999999998 77754 368999999999998 67753 46
Q ss_pred CCCeEeCcCCcCcccCchhhcCCCCCCEEEcc
Q 040495 394 NLNWLTMDSNLFTGTIPPVIGELKNLQLLDLG 425 (443)
Q Consensus 394 ~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~ 425 (443)
+|++|++++|+++ .+|+. ..+|+.|.+.
T Consensus 325 ~L~~L~L~~N~L~-~lp~~---~~~L~~L~~~ 352 (353)
T d1jl5a_ 325 NLKQLHVEYNPLR-EFPDI---PESVEDLRMN 352 (353)
T ss_dssp TCCEEECCSSCCS-SCCCC---CTTCCEEECC
T ss_pred CCCEEECcCCcCC-CCCcc---ccccCeeECc
Confidence 8999999999988 78864 3467777764
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=99.78 E-value=1.4e-18 Score=152.17 Aligned_cols=188 Identities=22% Similarity=0.319 Sum_probs=85.7
Q ss_pred CEEeCCCCcCCCCCchhhcCCCccCeEEccCCCCCCCCChhhhcCCCCceeeccCCcccccCCccccCCcCccEeeeecc
Q 040495 101 RYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSVDTNYLVGEIPSAIGSLFKLERLFIFHN 180 (443)
Q Consensus 101 ~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n 180 (443)
..+++..+.+++.. .++.+.+|++|++.+|.++ .++ .+..+++|++|++++|.+++.. .+..+++++++++++|
T Consensus 22 ~~~~l~~~~~~d~~--~~~~l~~L~~L~l~~~~i~-~l~-~l~~l~~L~~L~ls~n~i~~~~--~l~~l~~l~~l~~~~n 95 (227)
T d1h6ua2 22 IKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVT-TIE-GVQYLNNLIGLELKDNQITDLA--PLKNLTKITELELSGN 95 (227)
T ss_dssp HHHHTTCSSTTSEE--CHHHHHTCCEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCG--GGTTCCSCCEEECCSC
T ss_pred HHHHhCCCCcCCcC--CHHHcCCcCEEECCCCCCC-cch-hHhcCCCCcEeecCCceeeccc--cccccccccccccccc
Confidence 33445555554432 2344556666666666665 232 3555666666666666554322 1455555555555555
Q ss_pred ccCccCCccccCCCCCCEEEccCCcCCcccccccCCCCCCEEEcccccCCCCCCccccCCCCCcEEEcccCcCcccCChh
Q 040495 181 HITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLRLLDIAFNHFSGMIPPPIFNISSLEVISLSENRFTGSLPVD 260 (443)
Q Consensus 181 ~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~ 260 (443)
.++. ++ .+..+ ++|+.++++++...+. ..+...+.++.+.++++.+....+
T Consensus 96 ~~~~-i~-~l~~l-----------------------~~L~~l~l~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~-- 146 (227)
T d1h6ua2 96 PLKN-VS-AIAGL-----------------------QSIKTLDLTSTQITDV--TPLAGLSNLQVLYLDLNQITNISP-- 146 (227)
T ss_dssp CCSC-CG-GGTTC-----------------------TTCCEEECTTSCCCCC--GGGTTCTTCCEEECCSSCCCCCGG--
T ss_pred cccc-cc-ccccc-----------------------cccccccccccccccc--chhccccchhhhhchhhhhchhhh--
Confidence 4441 11 23334 4444444444433221 123333444445544444432111
Q ss_pred hhcCCCCCcEEeCCCCcCCccCCccCcCCCCCCEEecccCcCccccchhhhCCCCCCEEEccCCCCcc
Q 040495 261 AGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLGT 328 (443)
Q Consensus 261 ~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 328 (443)
+. ..++|++|++++|.+.+.. .+.++++|++|++++|++++. + .++.+++|++|++++|++++
T Consensus 147 ~~-~~~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~Ls~n~l~~l-~-~l~~l~~L~~L~Ls~N~lt~ 209 (227)
T d1h6ua2 147 LA-GLTNLQYLSIGNAQVSDLT--PLANLSKLTTLKADDNKISDI-S-PLASLPNLIEVHLKNNQISD 209 (227)
T ss_dssp GG-GCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCC-G-GGGGCTTCCEEECTTSCCCB
T ss_pred hc-cccccccccccccccccch--hhcccccceecccCCCccCCC-h-hhcCCCCCCEEECcCCcCCC
Confidence 11 3445555555555444211 244445555555555554432 1 14444555555555554443
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.76 E-value=6.4e-20 Score=177.92 Aligned_cols=333 Identities=17% Similarity=0.205 Sum_probs=224.9
Q ss_pred CCCCEEeCCCCcCCCC-CchhhcCCCccCeEEccCCCCCC----CCChhhhcCCCCceeeccCCccccc----CCcccc-
Q 040495 98 SFLRYINLANNGFLGE-IPPQIGRLNMLEGLVLSNNSFSG----TIPTNLSRRSNLIELSVDTNYLVGE----IPSAIG- 167 (443)
Q Consensus 98 ~~L~~L~L~~n~~~~~-~~~~l~~l~~L~~L~l~~n~~~~----~~p~~l~~l~~L~~L~l~~n~l~~~----~p~~l~- 167 (443)
++|++||++++++++. +.+.+..++++++|++++|.++. .++..+..+++|++|++++|.++.. +...+.
T Consensus 2 ~~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~ 81 (460)
T d1z7xw1 2 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 81 (460)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred CCCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhc
Confidence 3689999999999864 24446678999999999999873 2345567899999999999998632 222332
Q ss_pred CCcCccEeeeeccccCcc----CCccccCCCCCCEEEccCCcCCccc-c----c--------------------------
Q 040495 168 SLFKLERLFIFHNHITGQ----LPASIGNLSSLLAFDVRENILWGRI-D----S-------------------------- 212 (443)
Q Consensus 168 ~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~l~~n~l~~~~-~----~-------------------------- 212 (443)
...+|++|++++|.+++. ++..+..+++|++|++++|.+.... . .
T Consensus 82 ~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (460)
T d1z7xw1 82 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL 161 (460)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred CCCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccchhhhccc
Confidence 235799999999998754 3455678899999999999765321 0 0
Q ss_pred ---ccCCCCCCEEEcccccCCCCC----Cccc-cCCCCCcEEEcccCcCcccCC---hhhhcCCCCCcEEeCCCCcCCc-
Q 040495 213 ---LVQLRNLRLLDIAFNHFSGMI----PPPI-FNISSLEVISLSENRFTGSLP---VDAGVNLPNLRQLSPNGNNFTG- 280 (443)
Q Consensus 213 ---l~~l~~L~~L~l~~n~~~~~~----~~~l-~~l~~L~~L~l~~n~l~~~~~---~~~~~~~~~L~~L~L~~n~l~~- 280 (443)
+.....++.++++++...... ...+ ........+++.++.+...-. .......+.++.+.+.+|.+..
T Consensus 162 ~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~~~ 241 (460)
T d1z7xw1 162 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV 241 (460)
T ss_dssp HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccchhhhcccccccccccccccchhhcccccc
Confidence 011234555555544332110 0001 112345567776665542110 1112246788999999887643
Q ss_pred ----cCCccCcCCCCCCEEecccCcCcccc----chhhhCCCCCCEEEccCCCCcccCCCchhhHhh-hcCCCCCCEEEc
Q 040495 281 ----SIPVSLSNASRLEMIEFSRNQFSGRV----SVDFSRLKNLSFLNMGINNLGTRTANELDFINL-LANCSKLERLYF 351 (443)
Q Consensus 281 ----~~~~~l~~~~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~-~~~~~~L~~L~l 351 (443)
...........++.+++++|.+.... ...+...+.++.+++++|.+++.....+. .. ......|+.+++
T Consensus 242 ~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~--~~l~~~~~~L~~l~l 319 (460)
T d1z7xw1 242 GMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLC--ETLLEPGCQLESLWV 319 (460)
T ss_dssp HHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHH--HHHTSTTCCCCEEEC
T ss_pred ccchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhh--ccccccccccccccc
Confidence 22334456778999999999887542 23356788999999999988754332111 12 234568999999
Q ss_pred cCCcCcccCChhHhhh---ccCCCEEeccCCcCeec----Cchhhh-cCCCCCeEeCcCCcCccc----CchhhcCCCCC
Q 040495 352 NRNRFQGVLPQSMANF---SSTIKQIAMGRNRISGT----IPPGIR-SHANLNWLTMDSNLFTGT----IPPVIGELKNL 419 (443)
Q Consensus 352 ~~n~l~~~~p~~~~~~---~~~L~~L~L~~n~l~~~----~p~~l~-~~~~L~~L~L~~n~~~~~----~p~~~~~l~~L 419 (443)
++|.++......+... .++|+.|+|++|++++. ++..+. ..+.|++|+|++|.++.. +++.+..+++|
T Consensus 320 ~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L 399 (460)
T d1z7xw1 320 KSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSL 399 (460)
T ss_dssp TTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCC
T ss_pred cccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCC
Confidence 9999886544444332 36899999999999864 334443 467799999999999843 55667778999
Q ss_pred CEEEccCCcCccc
Q 040495 420 QLLDLGGNFLQGS 432 (443)
Q Consensus 420 ~~L~l~~n~l~~~ 432 (443)
++|||++|+++.+
T Consensus 400 ~~L~Ls~N~i~~~ 412 (460)
T d1z7xw1 400 RELDLSNNCLGDA 412 (460)
T ss_dssp CEEECCSSSCCHH
T ss_pred CEEECCCCcCCHH
Confidence 9999999999854
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=99.75 E-value=1.9e-17 Score=144.89 Aligned_cols=186 Identities=20% Similarity=0.353 Sum_probs=103.6
Q ss_pred CCCCEEEcccccCCCCCCccccCCCCCcEEEcccCcCcccCChhhhcCCCCCcEEeCCCCcCCccCCccCcCCCCCCEEe
Q 040495 217 RNLRLLDIAFNHFSGMIPPPIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIE 296 (443)
Q Consensus 217 ~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~ 296 (443)
.+|+.|++.+|.++. + +.+..+++|++|++++|.+++..| + ..+++++.+++++|.++ .++ .+..+++|+.++
T Consensus 41 ~~L~~L~l~~~~i~~-l-~~l~~l~~L~~L~ls~n~i~~~~~--l-~~l~~l~~l~~~~n~~~-~i~-~l~~l~~L~~l~ 113 (227)
T d1h6ua2 41 DGITTLSAFGTGVTT-I-EGVQYLNNLIGLELKDNQITDLAP--L-KNLTKITELELSGNPLK-NVS-AIAGLQSIKTLD 113 (227)
T ss_dssp HTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCCCGG--G-TTCCSCCEEECCSCCCS-CCG-GGTTCTTCCEEE
T ss_pred CCcCEEECCCCCCCc-c-hhHhcCCCCcEeecCCceeecccc--c-ccccccccccccccccc-ccc-cccccccccccc
Confidence 344444444444432 1 224444555555555554442211 1 14555555555555554 222 345556666666
Q ss_pred cccCcCccccchhhhCCCCCCEEEccCCCCcccCCCchhhHhhhcCCCCCCEEEccCCcCcccCChhHhhhccCCCEEec
Q 040495 297 FSRNQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAM 376 (443)
Q Consensus 297 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~L 376 (443)
++++...+.. .+...+.++.+.++.+.+....+ +..+++|++|++++|.+.+..+ +.. +++|+.|++
T Consensus 114 l~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~--------~~~~~~L~~L~l~~n~~~~~~~--l~~-l~~L~~L~L 180 (227)
T d1h6ua2 114 LTSTQITDVT--PLAGLSNLQVLYLDLNQITNISP--------LAGLTNLQYLSIGNAQVSDLTP--LAN-LSKLTTLKA 180 (227)
T ss_dssp CTTSCCCCCG--GGTTCTTCCEEECCSSCCCCCGG--------GGGCTTCCEEECCSSCCCCCGG--GTT-CTTCCEEEC
T ss_pred cccccccccc--hhccccchhhhhchhhhhchhhh--------hccccccccccccccccccchh--hcc-cccceeccc
Confidence 6665554322 24455666666666665554322 5556677777777776653222 444 367777777
Q ss_pred cCCcCeecCchhhhcCCCCCeEeCcCCcCcccCchhhcCCCCCCEEEccC
Q 040495 377 GRNRISGTIPPGIRSHANLNWLTMDSNLFTGTIPPVIGELKNLQLLDLGG 426 (443)
Q Consensus 377 ~~n~l~~~~p~~l~~~~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l~~ 426 (443)
++|++++ ++ .++.+++|++|++++|+++ .++. +.++++|++|++++
T Consensus 181 s~n~l~~-l~-~l~~l~~L~~L~Ls~N~lt-~i~~-l~~l~~L~~L~lsn 226 (227)
T d1h6ua2 181 DDNKISD-IS-PLASLPNLIEVHLKNNQIS-DVSP-LANTSNLFIVTLTN 226 (227)
T ss_dssp CSSCCCC-CG-GGGGCTTCCEEECTTSCCC-BCGG-GTTCTTCCEEEEEE
T ss_pred CCCccCC-Ch-hhcCCCCCCEEECcCCcCC-CCcc-cccCCCCCEEEeeC
Confidence 7777764 33 3677777888888888777 4442 67778888887763
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.74 E-value=6.8e-18 Score=149.38 Aligned_cols=102 Identities=17% Similarity=0.142 Sum_probs=63.5
Q ss_pred EEcCCCCCcccccccccCCCCCCEEeCCCCcCCCCCchhhcCCCccCeEEccCCCCCCCC-ChhhhcCCCCceeeccC-C
Q 040495 79 LDLRNQSIGGPLSPYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTI-PTNLSRRSNLIELSVDT-N 156 (443)
Q Consensus 79 L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~-p~~l~~l~~L~~L~l~~-n 156 (443)
++.++.+++ .+|+.+ .+++++|++++|.++...+.+|.++++|++|++++|.+...+ +..|.++++++++.+.. +
T Consensus 13 i~c~~~~l~-~iP~~l--~~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n 89 (242)
T d1xwdc1 13 FLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 89 (242)
T ss_dssp EEEESCSCS-SCCSCS--CSCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCT
T ss_pred EEEeCCCCC-CcCCCC--CCCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccccc
Confidence 333344444 344433 246788888888777444456777778888888777776443 34566677777776543 4
Q ss_pred cccccCCccccCCcCccEeeeeccccC
Q 040495 157 YLVGEIPSAIGSLFKLERLFIFHNHIT 183 (443)
Q Consensus 157 ~l~~~~p~~l~~l~~L~~L~l~~n~l~ 183 (443)
.+....+..+.++++|+++++++|.+.
T Consensus 90 ~l~~~~~~~~~~l~~L~~l~l~~~~l~ 116 (242)
T d1xwdc1 90 NLLYINPEAFQNLPNLQYLLISNTGIK 116 (242)
T ss_dssp TCCEECTTSEECCTTCCEEEEESCCCC
T ss_pred cccccccccccccccccccccchhhhc
Confidence 555555556666777777777776665
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.72 E-value=1.7e-17 Score=141.14 Aligned_cols=129 Identities=21% Similarity=0.233 Sum_probs=80.7
Q ss_pred CEEEcccccCCCCCCccccCCCCCcEEEcccCcCcccCChhhhcCCCCCcEEeCCCCcCCccCCccCcCCCCCCEEeccc
Q 040495 220 RLLDIAFNHFSGMIPPPIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSR 299 (443)
Q Consensus 220 ~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~ 299 (443)
+.++.++++++ .+|..+. +++++|++++|.+++.++...+..+++|++|++++|++....+..+..+++|++|++++
T Consensus 11 ~~v~Cs~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~ 87 (192)
T d1w8aa_ 11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEEeCCCcC-ccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeecc
Confidence 34556666555 3454432 45666666666666445555544566666666666666666666666666666666666
Q ss_pred CcCccccchhhhCCCCCCEEEccCCCCcccCCCchhhHhhhcCCCCCCEEEccCCcCc
Q 040495 300 NQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQ 357 (443)
Q Consensus 300 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 357 (443)
|++++..+..|.++++|++|+|++|.+++..+ ..|..+++|++|++++|.+.
T Consensus 88 N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~------~~f~~l~~L~~l~L~~N~~~ 139 (192)
T d1w8aa_ 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMP------GSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECT------TSSTTCTTCCEEECTTCCBC
T ss_pred ccccccCHHHHhCCCcccccccCCccccccCH------HHhcCCcccccccccccccc
Confidence 66666666666666666666666666666655 44566666666666666665
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.72 E-value=3.5e-17 Score=144.71 Aligned_cols=103 Identities=22% Similarity=0.245 Sum_probs=58.6
Q ss_pred CeEEccCCCCCCCCChhhhcCCCCceeeccCCcccccCCccccCCcCccEeeeeccccCccC-CccccCCCCCCEEEccC
Q 040495 125 EGLVLSNNSFSGTIPTNLSRRSNLIELSVDTNYLVGEIPSAIGSLFKLERLFIFHNHITGQL-PASIGNLSSLLAFDVRE 203 (443)
Q Consensus 125 ~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~-~~~l~~l~~L~~L~l~~ 203 (443)
++++.++..++ .+|..+. +++++|++++|.++...+..|.++++|++|++++|.+...+ +..+..++.++++.+..
T Consensus 11 ~~i~c~~~~l~-~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~ 87 (242)
T d1xwdc1 11 RVFLCQESKVT-EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 87 (242)
T ss_dssp SEEEEESCSCS-SCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEEC
T ss_pred CEEEEeCCCCC-CcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccc
Confidence 56667666666 5565442 46777777777776333345666777777777777665433 23455566666665543
Q ss_pred -CcCCccc-ccccCCCCCCEEEcccccCC
Q 040495 204 -NILWGRI-DSLVQLRNLRLLDIAFNHFS 230 (443)
Q Consensus 204 -n~l~~~~-~~l~~l~~L~~L~l~~n~~~ 230 (443)
+.+.... ..+..+++|+++++++|.+.
T Consensus 88 ~n~l~~~~~~~~~~l~~L~~l~l~~~~l~ 116 (242)
T d1xwdc1 88 ANNLLYINPEAFQNLPNLQYLLISNTGIK 116 (242)
T ss_dssp CTTCCEECTTSEECCTTCCEEEEESCCCC
T ss_pred cccccccccccccccccccccccchhhhc
Confidence 3333333 34455555555555555544
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.71 E-value=1.4e-16 Score=136.24 Aligned_cols=160 Identities=23% Similarity=0.351 Sum_probs=71.0
Q ss_pred CCCCcEEEcccCcCcccCChhhhcCCCCCcEEeCCCCcCCccCCccCcCCCCCCEEecccCcCccccchhhhCCCCCCEE
Q 040495 240 ISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFL 319 (443)
Q Consensus 240 l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 319 (443)
+.++++|+++++.++ .++ .+. .+++|++|++++|++++..| ++++++|++|++++|.+.... .+..+++|+.+
T Consensus 39 l~~l~~L~l~~~~i~-~l~-~l~-~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~~~~~--~l~~l~~L~~L 111 (199)
T d2omxa2 39 LDQVTTLQADRLGIK-SID-GVE-YLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADIT--PLANLTNLTGL 111 (199)
T ss_dssp HTTCCEEECTTSCCC-CCT-TGG-GCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG--GGTTCTTCSEE
T ss_pred hcCCCEEECCCCCCC-Ccc-ccc-cCCCcCcCccccccccCccc--ccCCccccccccccccccccc--ccccccccccc
Confidence 445555555555554 332 122 34555555555555543221 445555555555555444221 24445555555
Q ss_pred EccCCCCcccCCCchhhHhhhcCCCCCCEEEccCCcCcccCChhHhhhccCCCEEeccCCcCeecCchhhhcCCCCCeEe
Q 040495 320 NMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNRISGTIPPGIRSHANLNWLT 399 (443)
Q Consensus 320 ~l~~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~ 399 (443)
+++++......+ +..+++|+.|++++|++. .++ .+.. .++++.|++++|++++ ++ .++.+++|++|+
T Consensus 112 ~l~~~~~~~~~~--------~~~l~~L~~L~l~~n~l~-~~~-~l~~-~~~L~~L~l~~n~l~~-l~-~l~~l~~L~~L~ 178 (199)
T d2omxa2 112 TLFNNQITDIDP--------LKNLTNLNRLELSSNTIS-DIS-ALSG-LTSLQQLNFSSNQVTD-LK-PLANLTTLERLD 178 (199)
T ss_dssp ECCSSCCCCCGG--------GTTCTTCSEEECCSSCCC-CCG-GGTT-CTTCSEEECCSSCCCC-CG-GGTTCTTCCEEE
T ss_pred cccccccccccc--------cchhhhhHHhhhhhhhhc-ccc-cccc-cccccccccccccccC-Cc-cccCCCCCCEEE
Confidence 555444433221 344445555555555444 222 1222 2444445554444442 21 244444444444
Q ss_pred CcCCcCcccCchhhcCCCCCCE
Q 040495 400 MDSNLFTGTIPPVIGELKNLQL 421 (443)
Q Consensus 400 L~~n~~~~~~p~~~~~l~~L~~ 421 (443)
+++|+++ .++ .++++++|++
T Consensus 179 ls~N~i~-~i~-~l~~L~~L~~ 198 (199)
T d2omxa2 179 ISSNKVS-DIS-VLAKLTNLES 198 (199)
T ss_dssp CCSSCCC-CCG-GGGGCTTCSE
T ss_pred CCCCCCC-CCc-cccCCCCCCc
Confidence 4444444 222 2344444443
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.71 E-value=2.3e-16 Score=135.99 Aligned_cols=164 Identities=25% Similarity=0.385 Sum_probs=97.9
Q ss_pred CCCcEEEcccCcCcccCChhhhcCCCCCcEEeCCCCcCCccCCccCcCCCCCCEEecccCcCccccchhhhCCCCCCEEE
Q 040495 241 SSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLN 320 (443)
Q Consensus 241 ~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 320 (443)
.+|++|++++|.++ .++ .+. .+++|++|++++|++++. + .++.+++|++|++++|++++. + .+..+++|+.|+
T Consensus 46 ~~L~~L~l~~~~i~-~l~-~l~-~l~~L~~L~L~~n~i~~l-~-~~~~l~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~ 118 (210)
T d1h6ta2 46 NSIDQIIANNSDIK-SVQ-GIQ-YLPNVTKLFLNGNKLTDI-K-PLANLKNLGWLFLDENKVKDL-S-SLKDLKKLKSLS 118 (210)
T ss_dssp HTCCEEECTTSCCC-CCT-TGG-GCTTCCEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCCG-G-GGTTCTTCCEEE
T ss_pred cCccEEECcCCCCC-Cch-hHh-hCCCCCEEeCCCccccCc-c-ccccCcccccccccccccccc-c-cccccccccccc
Confidence 34455555555444 222 122 455566666666655532 2 245556666666666666532 2 355666666666
Q ss_pred ccCCCCcccCCCchhhHhhhcCCCCCCEEEccCCcCcccCChhHhhhccCCCEEeccCCcCeecCchhhhcCCCCCeEeC
Q 040495 321 MGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNRISGTIPPGIRSHANLNWLTM 400 (443)
Q Consensus 321 l~~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L 400 (443)
+++|.+... ..+..+++++.+++++|.+++. ..+.. .++|+.+++++|++++ ++ .+..+++|++|++
T Consensus 119 l~~~~~~~~--------~~l~~l~~l~~l~~~~n~l~~~--~~~~~-l~~L~~l~l~~n~l~~-i~-~l~~l~~L~~L~L 185 (210)
T d1h6ta2 119 LEHNGISDI--------NGLVHLPQLESLYLGNNKITDI--TVLSR-LTKLDTLSLEDNQISD-IV-PLAGLTKLQNLYL 185 (210)
T ss_dssp CTTSCCCCC--------GGGGGCTTCCEEECCSSCCCCC--GGGGG-CTTCSEEECCSSCCCC-CG-GGTTCTTCCEEEC
T ss_pred ccccccccc--------cccccccccccccccccccccc--ccccc-cccccccccccccccc-cc-cccCCCCCCEEEC
Confidence 666655432 2356667777777777776632 22333 3677778888777774 33 3677788888888
Q ss_pred cCCcCcccCchhhcCCCCCCEEEccC
Q 040495 401 DSNLFTGTIPPVIGELKNLQLLDLGG 426 (443)
Q Consensus 401 ~~n~~~~~~p~~~~~l~~L~~L~l~~ 426 (443)
++|+++ .+| .+.++++|++|+|++
T Consensus 186 s~N~i~-~l~-~l~~l~~L~~L~Ls~ 209 (210)
T d1h6ta2 186 SKNHIS-DLR-ALAGLKNLDVLELFS 209 (210)
T ss_dssp CSSCCC-BCG-GGTTCTTCSEEEEEE
T ss_pred CCCCCC-CCh-hhcCCCCCCEEEccC
Confidence 888876 455 477788888888764
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.69 E-value=2.3e-17 Score=140.28 Aligned_cols=172 Identities=16% Similarity=0.224 Sum_probs=140.2
Q ss_pred CcEEEcccCcCcccCChhhhcCCCCCcEEeCCCCcCCccC-CccCcCCCCCCEEecccCcCccccchhhhCCCCCCEEEc
Q 040495 243 LEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSI-PVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNM 321 (443)
Q Consensus 243 L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~-~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 321 (443)
.++++.++++++ .+|..+. +++++|+|++|++++.+ +..|..+++|+.|++++|.+.+..+..+..+++|++|++
T Consensus 10 ~~~v~Cs~~~L~-~iP~~lp---~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~L 85 (192)
T d1w8aa_ 10 GTTVDCTGRGLK-EIPRDIP---LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQL 85 (192)
T ss_dssp TTEEECTTSCCS-SCCSCCC---TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CCEEEEeCCCcC-ccCCCCC---CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeee
Confidence 457899999998 8997653 68999999999998644 566789999999999999999999999999999999999
Q ss_pred cCCCCcccCCCchhhHhhhcCCCCCCEEEccCCcCcccCChhHhhhccCCCEEeccCCcCeecCch-hhhcCCCCCeEeC
Q 040495 322 GINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNRISGTIPP-GIRSHANLNWLTM 400 (443)
Q Consensus 322 ~~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~-~l~~~~~L~~L~L 400 (443)
++|+++...+ ..|.++++|++|+|++|++++..|..+.. .++|++++|++|.+...... ++. ..++.+.+
T Consensus 86 s~N~l~~l~~------~~F~~l~~L~~L~L~~N~l~~i~~~~f~~-l~~L~~l~L~~N~~~~~~~~~~~~--~~l~~~~l 156 (192)
T d1w8aa_ 86 GENKIKEISN------KMFLGLHQLKTLNLYDNQISCVMPGSFEH-LNSLTSLNLASNPFNCNCHLAWFA--EWLRKKSL 156 (192)
T ss_dssp CSCCCCEECS------SSSTTCTTCCEEECCSSCCCEECTTSSTT-CTTCCEEECTTCCBCCSGGGHHHH--HHHHHHCC
T ss_pred ccccccccCH------HHHhCCCcccccccCCccccccCHHHhcC-CcccccccccccccccccchHHHh--hhhhhhcc
Confidence 9999999887 67899999999999999999544555555 48999999999998854322 222 23556677
Q ss_pred cCCcCcccCchhhcCCCCCCEEEccCCcCc
Q 040495 401 DSNLFTGTIPPVIGELKNLQLLDLGGNFLQ 430 (443)
Q Consensus 401 ~~n~~~~~~p~~~~~l~~L~~L~l~~n~l~ 430 (443)
..+.+....|.. +..++.++++.|.+.
T Consensus 157 ~~~~~~c~~p~~---l~~~~l~~L~~n~l~ 183 (192)
T d1w8aa_ 157 NGGAARCGAPSK---VRDVQIKDLPHSEFK 183 (192)
T ss_dssp SGGGCBBCSSTT---TTTSBGGGSCTTTCC
T ss_pred cCCCeEeCCChh---hcCCEeeecCHhhCc
Confidence 778887777755 455678899999886
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.69 E-value=3.1e-16 Score=135.24 Aligned_cols=164 Identities=21% Similarity=0.314 Sum_probs=103.5
Q ss_pred CCCCEEEcccccCCCCCCccccCCCCCcEEEcccCcCcccCChhhhcCCCCCcEEeCCCCcCCccCCccCcCCCCCCEEe
Q 040495 217 RNLRLLDIAFNHFSGMIPPPIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIE 296 (443)
Q Consensus 217 ~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~ 296 (443)
.++++|++++|.+... ..+..+++|++|++++|.++ .++. +. .+++|+.|++++|++++ ++ .+..+++|+.|+
T Consensus 46 ~~L~~L~l~~~~i~~l--~~l~~l~~L~~L~L~~n~i~-~l~~-~~-~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~ 118 (210)
T d1h6ta2 46 NSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLT-DIKP-LA-NLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLS 118 (210)
T ss_dssp HTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCC-CCGG-GT-TCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEE
T ss_pred cCccEEECcCCCCCCc--hhHhhCCCCCEEeCCCcccc-Cccc-cc-cCccccccccccccccc-cc-cccccccccccc
Confidence 3455555555555432 12455666666666666665 3332 22 56667777777766663 33 356667777777
Q ss_pred cccCcCccccchhhhCCCCCCEEEccCCCCcccCCCchhhHhhhcCCCCCCEEEccCCcCcccCChhHhhhccCCCEEec
Q 040495 297 FSRNQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAM 376 (443)
Q Consensus 297 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~L 376 (443)
+++|.+.. ...+..+++++.+++++|.+++.. .+..+++|+++++++|++++ ++. +.. .++|+.|++
T Consensus 119 l~~~~~~~--~~~l~~l~~l~~l~~~~n~l~~~~--------~~~~l~~L~~l~l~~n~l~~-i~~-l~~-l~~L~~L~L 185 (210)
T d1h6ta2 119 LEHNGISD--INGLVHLPQLESLYLGNNKITDIT--------VLSRLTKLDTLSLEDNQISD-IVP-LAG-LTKLQNLYL 185 (210)
T ss_dssp CTTSCCCC--CGGGGGCTTCCEEECCSSCCCCCG--------GGGGCTTCSEEECCSSCCCC-CGG-GTT-CTTCCEEEC
T ss_pred cccccccc--cccccccccccccccccccccccc--------cccccccccccccccccccc-ccc-ccC-CCCCCEEEC
Confidence 77776653 234667777777777777766532 25567778888888888773 332 444 377888888
Q ss_pred cCCcCeecCchhhhcCCCCCeEeCcC
Q 040495 377 GRNRISGTIPPGIRSHANLNWLTMDS 402 (443)
Q Consensus 377 ~~n~l~~~~p~~l~~~~~L~~L~L~~ 402 (443)
++|+++ .+| .+..+++|++|+|++
T Consensus 186 s~N~i~-~l~-~l~~l~~L~~L~Ls~ 209 (210)
T d1h6ta2 186 SKNHIS-DLR-ALAGLKNLDVLELFS 209 (210)
T ss_dssp CSSCCC-BCG-GGTTCTTCSEEEEEE
T ss_pred CCCCCC-CCh-hhcCCCCCCEEEccC
Confidence 888887 455 477888888888764
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.69 E-value=5.5e-16 Score=132.45 Aligned_cols=147 Identities=24% Similarity=0.347 Sum_probs=83.8
Q ss_pred CCCCcEEeCCCCcCCccCCccCcCCCCCCEEecccCcCccccchhhhCCCCCCEEEccCCCCcccCCCchhhHhhhcCCC
Q 040495 265 LPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCS 344 (443)
Q Consensus 265 ~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~ 344 (443)
++++++|++++|+++. + ..+..+++|++|++++|++++..+ ++++++|++|++++|.+.... .+.+++
T Consensus 39 l~~l~~L~l~~~~i~~-l-~~l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~~~~~--------~l~~l~ 106 (199)
T d2omxa2 39 LDQVTTLQADRLGIKS-I-DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADIT--------PLANLT 106 (199)
T ss_dssp HTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG--------GGTTCT
T ss_pred hcCCCEEECCCCCCCC-c-cccccCCCcCcCccccccccCccc--ccCCccccccccccccccccc--------cccccc
Confidence 4566666666666652 2 235556666666666666664332 556666666666666554432 255666
Q ss_pred CCCEEEccCCcCcccCChhHhhhccCCCEEeccCCcCeecCchhhhcCCCCCeEeCcCCcCcccCchhhcCCCCCCEEEc
Q 040495 345 KLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNRISGTIPPGIRSHANLNWLTMDSNLFTGTIPPVIGELKNLQLLDL 424 (443)
Q Consensus 345 ~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~l 424 (443)
+|+.|++++|.+.. ++ .+.. +++|+.+++++|++. .++ .+..+++|++|++++|.+++ ++ .+.++++|++|++
T Consensus 107 ~L~~L~l~~~~~~~-~~-~~~~-l~~L~~L~l~~n~l~-~~~-~l~~~~~L~~L~l~~n~l~~-l~-~l~~l~~L~~L~l 179 (199)
T d2omxa2 107 NLTGLTLFNNQITD-ID-PLKN-LTNLNRLELSSNTIS-DIS-ALSGLTSLQQLNFSSNQVTD-LK-PLANLTTLERLDI 179 (199)
T ss_dssp TCSEEECCSSCCCC-CG-GGTT-CTTCSEEECCSSCCC-CCG-GGTTCTTCSEEECCSSCCCC-CG-GGTTCTTCCEEEC
T ss_pred cccccccccccccc-cc-ccch-hhhhHHhhhhhhhhc-ccc-cccccccccccccccccccC-Cc-cccCCCCCCEEEC
Confidence 66666666666552 21 2333 256666666666665 232 35566666666666666653 32 2556666666666
Q ss_pred cCCcCc
Q 040495 425 GGNFLQ 430 (443)
Q Consensus 425 ~~n~l~ 430 (443)
++|+++
T Consensus 180 s~N~i~ 185 (199)
T d2omxa2 180 SSNKVS 185 (199)
T ss_dssp CSSCCC
T ss_pred CCCCCC
Confidence 666665
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.67 E-value=8.5e-17 Score=145.55 Aligned_cols=256 Identities=17% Similarity=0.233 Sum_probs=160.9
Q ss_pred cEeeeeccccCccCCccccCCCCCCEEEccCCcCCcccccccCCCCCCEEEcccccCCCC-CCccccCCCCCcEEEcccC
Q 040495 173 ERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRIDSLVQLRNLRLLDIAFNHFSGM-IPPPIFNISSLEVISLSEN 251 (443)
Q Consensus 173 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~~~~~-~~~~l~~l~~L~~L~l~~n 251 (443)
+.++++++.+.......+.. .....+.+................+|++|+++++.++.. +...+.++++|++|+++++
T Consensus 3 ~~lDLs~~~l~~~~l~~l~~-~~~~~lrl~~~~~~~~~~~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~ 81 (284)
T d2astb2 3 QTLDLTGKNLHPDVTGRLLS-QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGL 81 (284)
T ss_dssp SEEECTTCBCCHHHHHHHHH-TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTC
T ss_pred CEEECCCCCCCchHHHHHHh-ccceEeeccccccccchhhhccCCCCCEEECCCCccCHHHHHHHHHhCCCccccccccc
Confidence 36777777654222222211 234556665554444333344556888888888877643 2344567888888888888
Q ss_pred cCcccCChhhhcCCCCCcEEeCCCC-cCCcc-CCccCcCCCCCCEEecccC-cCccc-cchhhh-CCCCCCEEEccCC--
Q 040495 252 RFTGSLPVDAGVNLPNLRQLSPNGN-NFTGS-IPVSLSNASRLEMIEFSRN-QFSGR-VSVDFS-RLKNLSFLNMGIN-- 324 (443)
Q Consensus 252 ~l~~~~~~~~~~~~~~L~~L~L~~n-~l~~~-~~~~l~~~~~L~~L~l~~n-~l~~~-~~~~~~-~l~~L~~L~l~~n-- 324 (443)
.+++..+..+. .+++|++|+++++ .+++. +......+++|++|+++++ .+++. ....+. ..++|+.|++++.
T Consensus 82 ~l~~~~~~~l~-~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 160 (284)
T d2astb2 82 RLSDPIVNTLA-KNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRK 160 (284)
T ss_dssp BCCHHHHHHHT-TCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGG
T ss_pred CCCcHHHHHHh-cCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhccccc
Confidence 88766666665 6788888888885 55532 2233456788888888886 34432 222233 3567888888764
Q ss_pred CCcccCCCchhhHhhhcCCCCCCEEEccCC-cCcccCChhHhhhccCCCEEeccCC-cCeecCchhhhcCCCCCeEeCcC
Q 040495 325 NLGTRTANELDFINLLANCSKLERLYFNRN-RFQGVLPQSMANFSSTIKQIAMGRN-RISGTIPPGIRSHANLNWLTMDS 402 (443)
Q Consensus 325 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~p~~~~~~~~~L~~L~L~~n-~l~~~~p~~l~~~~~L~~L~L~~ 402 (443)
.++.. .+.....++++|++|++++| .+++.....+..+ ++|++|++++| .+++.....++.+++|+.|++++
T Consensus 161 ~i~~~-----~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~-~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~ 234 (284)
T d2astb2 161 NLQKS-----DLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQL-NYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFG 234 (284)
T ss_dssp GSCHH-----HHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGC-TTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTT
T ss_pred ccccc-----cccccccccccccccccccccCCCchhhhhhccc-CcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeC
Confidence 23322 12234567888888888876 4676666667664 78888888885 57766666788888888888888
Q ss_pred CcCcccCchhhcCCCCCCEEEccCCcCcccCCccccC
Q 040495 403 NLFTGTIPPVIGELKNLQLLDLGGNFLQGSIPSSLGN 439 (443)
Q Consensus 403 n~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~p~~~~~ 439 (443)
+--.+.++.....+++|+ +..+++++..+..+++
T Consensus 235 ~~~d~~l~~l~~~lp~L~---i~~~~ls~~~~~~~~~ 268 (284)
T d2astb2 235 IVPDGTLQLLKEALPHLQ---INCSHFTTIARPTIGN 268 (284)
T ss_dssp SSCTTCHHHHHHHSTTSE---ESCCCSCCTTCSSCSS
T ss_pred CCCHHHHHHHHHhCcccc---ccCccCCCCCCCccCc
Confidence 733333333334455544 5667777655555443
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.65 E-value=7.9e-17 Score=145.76 Aligned_cols=254 Identities=16% Similarity=0.128 Sum_probs=166.2
Q ss_pred ceeeccCCcccccCCccccCCcCccEeeeeccccCccCCccccCCCCCCEEEccCCcCCccc--ccccCCCCCCEEEccc
Q 040495 149 IELSVDTNYLVGEIPSAIGSLFKLERLFIFHNHITGQLPASIGNLSSLLAFDVRENILWGRI--DSLVQLRNLRLLDIAF 226 (443)
Q Consensus 149 ~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~--~~l~~l~~L~~L~l~~ 226 (443)
+++|++++.+.......+.. .....+.++........ .......+|++|+++++.+.... ..+..+++|++|++++
T Consensus 3 ~~lDLs~~~l~~~~l~~l~~-~~~~~lrl~~~~~~~~~-~~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~ 80 (284)
T d2astb2 3 QTLDLTGKNLHPDVTGRLLS-QGVIAFRCPRSFMDQPL-AEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEG 80 (284)
T ss_dssp SEEECTTCBCCHHHHHHHHH-TTCSEEECTTCEECSCC-CSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTT
T ss_pred CEEECCCCCCCchHHHHHHh-ccceEeeccccccccch-hhhccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccc
Confidence 46888887764322222111 23445555555544222 23345568999999988776544 5567889999999999
Q ss_pred ccCCCCCCccccCCCCCcEEEcccC-cCcccCChhhhcCCCCCcEEeCCCC-cCCcc-CCccCc-CCCCCCEEecccC--
Q 040495 227 NHFSGMIPPPIFNISSLEVISLSEN-RFTGSLPVDAGVNLPNLRQLSPNGN-NFTGS-IPVSLS-NASRLEMIEFSRN-- 300 (443)
Q Consensus 227 n~~~~~~~~~l~~l~~L~~L~l~~n-~l~~~~~~~~~~~~~~L~~L~L~~n-~l~~~-~~~~l~-~~~~L~~L~l~~n-- 300 (443)
+.+++..+..++.+++|++|+++++ .++..--..+...+++|++|+++++ .+++. +...+. .++.|+.|+++++
T Consensus 81 ~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 160 (284)
T d2astb2 81 LRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRK 160 (284)
T ss_dssp CBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGG
T ss_pred cCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhccccc
Confidence 9887777777888899999999986 4553222233446889999999986 44432 222232 3578999999875
Q ss_pred cCccc-cchhhhCCCCCCEEEccCC-CCcccCCCchhhHhhhcCCCCCCEEEccCC-cCcccCChhHhhhccCCCEEecc
Q 040495 301 QFSGR-VSVDFSRLKNLSFLNMGIN-NLGTRTANELDFINLLANCSKLERLYFNRN-RFQGVLPQSMANFSSTIKQIAMG 377 (443)
Q Consensus 301 ~l~~~-~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~p~~~~~~~~~L~~L~L~ 377 (443)
.++.. +......+++|++|+++++ .+++... ..+..+++|++|++++| .+++.....+.+ +++|+.|+++
T Consensus 161 ~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~------~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~-~~~L~~L~l~ 233 (284)
T d2astb2 161 NLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCF------QEFFQLNYLQHLSLSRCYDIIPETLLELGE-IPTLKTLQVF 233 (284)
T ss_dssp GSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGG------GGGGGCTTCCEEECTTCTTCCGGGGGGGGG-CTTCCEEECT
T ss_pred ccccccccccccccccccccccccccCCCchhh------hhhcccCcCCEEECCCCCCCChHHHHHHhc-CCCCCEEeee
Confidence 34433 2233467899999999886 4665544 55778899999999985 677666666666 4789999999
Q ss_pred CCcCeec-CchhhhcCCCCCeEeCcCCcCcccCchhhcC
Q 040495 378 RNRISGT-IPPGIRSHANLNWLTMDSNLFTGTIPPVIGE 415 (443)
Q Consensus 378 ~n~l~~~-~p~~l~~~~~L~~L~L~~n~~~~~~p~~~~~ 415 (443)
++ +++. ++.....+++|+ +..+.+++..+..+++
T Consensus 234 ~~-~~d~~l~~l~~~lp~L~---i~~~~ls~~~~~~~~~ 268 (284)
T d2astb2 234 GI-VPDGTLQLLKEALPHLQ---INCSHFTTIARPTIGN 268 (284)
T ss_dssp TS-SCTTCHHHHHHHSTTSE---ESCCCSCCTTCSSCSS
T ss_pred CC-CCHHHHHHHHHhCcccc---ccCccCCCCCCCccCc
Confidence 88 4433 333334566554 4666777555555544
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.58 E-value=4.2e-16 Score=145.19 Aligned_cols=45 Identities=18% Similarity=0.087 Sum_probs=25.8
Q ss_pred CChhhhcCCCCceeeccCCccccc----CCccccCCcCccEeeeecccc
Q 040495 138 IPTNLSRRSNLIELSVDTNYLVGE----IPSAIGSLFKLERLFIFHNHI 182 (443)
Q Consensus 138 ~p~~l~~l~~L~~L~l~~n~l~~~----~p~~l~~l~~L~~L~l~~n~l 182 (443)
+...+....+|++|++++|.+... +...+...++|+.++++++..
T Consensus 23 l~~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~ 71 (344)
T d2ca6a1 23 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFT 71 (344)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCT
T ss_pred HHHHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcc
Confidence 344556667777777777766432 223344556666666665543
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.58 E-value=1.1e-15 Score=142.24 Aligned_cols=255 Identities=16% Similarity=0.187 Sum_probs=118.0
Q ss_pred CCccccCCcCccEeeeeccccCccC----CccccCCCCCCEEEccCCcCCccc-----------ccccCCCCCCEEEccc
Q 040495 162 IPSAIGSLFKLERLFIFHNHITGQL----PASIGNLSSLLAFDVRENILWGRI-----------DSLVQLRNLRLLDIAF 226 (443)
Q Consensus 162 ~p~~l~~l~~L~~L~l~~n~l~~~~----~~~l~~l~~L~~L~l~~n~l~~~~-----------~~l~~l~~L~~L~l~~ 226 (443)
+...+.....+++|++++|.++... ...+...++|+.+++.++...... ..+...++|++|++++
T Consensus 23 l~~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~ 102 (344)
T d2ca6a1 23 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD 102 (344)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred HHHHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccc
Confidence 3344555677777777777665322 223445566667766655332111 2223345555555555
Q ss_pred ccCCCCC----CccccCCCCCcEEEcccCcCcccCChhhhcCCCCCcEEeCCCCcCCccCCccCcCCCCCCEEecccCcC
Q 040495 227 NHFSGMI----PPPIFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQF 302 (443)
Q Consensus 227 n~~~~~~----~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l 302 (443)
|.+.... ...+...++|++|++++|.+...-...+...+ .. -.........+.|+.+++++|.+
T Consensus 103 n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l---~~---------~~~~~~~~~~~~L~~l~l~~n~i 170 (344)
T d2ca6a1 103 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARAL---QE---------LAVNKKAKNAPPLRSIICGRNRL 170 (344)
T ss_dssp CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHH---HH---------HHHHHHHHTCCCCCEEECCSSCC
T ss_pred cccccccccchhhhhcccccchheecccccccccccccccccc---cc---------cccccccccCcccceeecccccc
Confidence 5544321 11222334455555554443211000000000 00 00000012334555555555555
Q ss_pred ccc----cchhhhCCCCCCEEEccCCCCcccCCCchhhHhhhcCCCCCCEEEccCCcCcccCC----hhHhhhccCCCEE
Q 040495 303 SGR----VSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLP----QSMANFSSTIKQI 374 (443)
Q Consensus 303 ~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p----~~~~~~~~~L~~L 374 (443)
+.. +...+...+.|+.|++++|.++...... .....+..+++|+.|++++|.++.... ..+.. .++|++|
T Consensus 171 ~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~-~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~-~~~L~~L 248 (344)
T d2ca6a1 171 ENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEH-LLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKS-WPNLREL 248 (344)
T ss_dssp TGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHH-HHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGG-CTTCCEE
T ss_pred cccccccccchhhhhhhhccccccccccccccccc-chhhhhcchhhhcccccccccccccccccccccccc-cccchhh
Confidence 422 1222344556666666666554321100 011234556666666666666543221 12222 3566666
Q ss_pred eccCCcCeecCch----hhhc--CCCCCeEeCcCCcCccc----Cchhhc-CCCCCCEEEccCCcCc
Q 040495 375 AMGRNRISGTIPP----GIRS--HANLNWLTMDSNLFTGT----IPPVIG-ELKNLQLLDLGGNFLQ 430 (443)
Q Consensus 375 ~L~~n~l~~~~p~----~l~~--~~~L~~L~L~~n~~~~~----~p~~~~-~l~~L~~L~l~~n~l~ 430 (443)
++++|.+++.... .+.. .+.|++|++++|.++.. +.+.+. +.++|++|++++|++.
T Consensus 249 ~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~ 315 (344)
T d2ca6a1 249 GLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 315 (344)
T ss_dssp ECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred hhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCC
Confidence 6666666654222 2222 34577777777776532 233332 4566777777777765
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.55 E-value=9.5e-15 Score=119.82 Aligned_cols=125 Identities=16% Similarity=0.207 Sum_probs=74.8
Q ss_pred cCCCCCCEEecccCcCccccchhhhCCCCCCEEEccCCCCcccCCCchhhHhhhcCCCCCCEEEccCCcCcccCChhHhh
Q 040495 287 SNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQSMAN 366 (443)
Q Consensus 287 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~ 366 (443)
.++.++++|++++|+++.. +..+..+++|+.|++++|.++.... +..+++|++|++++|+++ .+|..++.
T Consensus 15 ~n~~~lr~L~L~~n~I~~i-~~~~~~l~~L~~L~Ls~N~i~~l~~--------~~~l~~L~~L~ls~N~i~-~l~~~~~~ 84 (162)
T d1a9na_ 15 TNAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKLDG--------FPLLRRLKTLLVNNNRIC-RIGEGLDQ 84 (162)
T ss_dssp ECTTSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCCEECC--------CCCCSSCCEEECCSSCCC-EECSCHHH
T ss_pred cCcCcCcEEECCCCCCCcc-CccccccccCCEEECCCCCCCccCC--------cccCcchhhhhccccccc-CCCccccc
Confidence 3445555666666665533 3334455666666666666654422 556666777777777766 34443333
Q ss_pred hccCCCEEeccCCcCeecCc--hhhhcCCCCCeEeCcCCcCcccCc----hhhcCCCCCCEEE
Q 040495 367 FSSTIKQIAMGRNRISGTIP--PGIRSHANLNWLTMDSNLFTGTIP----PVIGELKNLQLLD 423 (443)
Q Consensus 367 ~~~~L~~L~L~~n~l~~~~p--~~l~~~~~L~~L~L~~n~~~~~~p----~~~~~l~~L~~L~ 423 (443)
.+++|+.|++++|+++. ++ ..+..+++|+++++++|+++ ..| ..+..+++|++||
T Consensus 85 ~l~~L~~L~L~~N~i~~-~~~l~~l~~l~~L~~L~l~~N~i~-~~~~~r~~~i~~lp~L~~LD 145 (162)
T d1a9na_ 85 ALPDLTELILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLD 145 (162)
T ss_dssp HCTTCCEEECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEET
T ss_pred cccccccceeccccccc-cccccccccccccchhhcCCCccc-cccchHHHHHHHCCCcCeeC
Confidence 24677777777777663 22 35667777777777777776 333 2466677777776
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.52 E-value=3.8e-14 Score=110.56 Aligned_cols=100 Identities=20% Similarity=0.326 Sum_probs=45.7
Q ss_pred EEeCCCCcCCCCCchhhcCCCccCeEEccCCCCCCCCChhhhcCCCCceeeccCCcccccCCccccCCcCccEeeeeccc
Q 040495 102 YINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSVDTNYLVGEIPSAIGSLFKLERLFIFHNH 181 (443)
Q Consensus 102 ~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l~~n~ 181 (443)
+|++++|+++ .++ .+.++++|++|++++|.++ .+|..+..+++|++|++++|.++ .+| .++.+++|+++++++|+
T Consensus 2 ~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~-~l~-~~~~l~~L~~L~l~~N~ 76 (124)
T d1dcea3 2 VLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVD-GVANLPRLQELLLCNNR 76 (124)
T ss_dssp EEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCG-GGTTCSSCCEEECCSSC
T ss_pred EEEcCCCCCC-CCc-ccccCCCCCEEECCCCccC-cchhhhhhhhccccccccccccc-ccC-ccccccccCeEECCCCc
Confidence 4455555544 222 2444555555555555554 34444455555555555555544 222 24445555555555555
Q ss_pred cCccC-CccccCCCCCCEEEccCCcC
Q 040495 182 ITGQL-PASIGNLSSLLAFDVRENIL 206 (443)
Q Consensus 182 l~~~~-~~~l~~l~~L~~L~l~~n~l 206 (443)
++... ...+..+++|+++++++|.+
T Consensus 77 i~~~~~~~~l~~~~~L~~L~l~~N~i 102 (124)
T d1dcea3 77 LQQSAAIQPLVSCPRLVLLNLQGNSL 102 (124)
T ss_dssp CCSSSTTGGGGGCTTCCEEECTTSGG
T ss_pred cCCCCCchhhcCCCCCCEEECCCCcC
Confidence 44221 12334444444444444433
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.48 E-value=1.3e-13 Score=112.99 Aligned_cols=112 Identities=17% Similarity=0.141 Sum_probs=68.3
Q ss_pred ccCCCCCcEEEcccCcCcccCChhhhcCCCCCcEEeCCCCcCCccCCccCcCCCCCCEEecccCcCccccchhhhCCCCC
Q 040495 237 IFNISSLEVISLSENRFTGSLPVDAGVNLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNL 316 (443)
Q Consensus 237 l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L 316 (443)
+.+..++++|++++|+++ .++. .+..+++|++|++++|+++ .++ .+..+++|++|++++|+++...+..+..+++|
T Consensus 14 ~~n~~~lr~L~L~~n~I~-~i~~-~~~~l~~L~~L~Ls~N~i~-~l~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L 89 (162)
T d1a9na_ 14 YTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIR-KLD-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 89 (162)
T ss_dssp EECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCC-EEC-CCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred ccCcCcCcEEECCCCCCC-ccCc-cccccccCCEEECCCCCCC-ccC-CcccCcchhhhhcccccccCCCcccccccccc
Confidence 345556667777777666 4543 3335667777777777766 332 35666777777777777765555555566677
Q ss_pred CEEEccCCCCcccCCCchhhHhhhcCCCCCCEEEccCCcCc
Q 040495 317 SFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQ 357 (443)
Q Consensus 317 ~~L~l~~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 357 (443)
+.|++++|.+..... ...+..+++|++|++++|+++
T Consensus 90 ~~L~L~~N~i~~~~~-----l~~l~~l~~L~~L~l~~N~i~ 125 (162)
T d1a9na_ 90 TELILTNNSLVELGD-----LDPLASLKSLTYLCILRNPVT 125 (162)
T ss_dssp CEEECCSCCCCCGGG-----GGGGGGCTTCCEEECCSSGGG
T ss_pred ccceecccccccccc-----ccccccccccchhhcCCCccc
Confidence 777777766654321 123556666666666666665
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.48 E-value=3e-13 Score=105.34 Aligned_cols=86 Identities=23% Similarity=0.300 Sum_probs=38.2
Q ss_pred CCCCCcEEeCCCCcCCccCCccCcCCCCCCEEecccCcCccccchhhhCCCCCCEEEccCCCCcccCCCchhhHhhhcCC
Q 040495 264 NLPNLRQLSPNGNNFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANC 343 (443)
Q Consensus 264 ~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~ 343 (443)
.+++|++|++++|.++ .+|..+..+++|++|++++|++++. + .+..+++|+.+++++|.++..... ..+..+
T Consensus 18 ~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~l-~-~~~~l~~L~~L~l~~N~i~~~~~~-----~~l~~~ 89 (124)
T d1dcea3 18 QLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENV-D-GVANLPRLQELLLCNNRLQQSAAI-----QPLVSC 89 (124)
T ss_dssp GGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCC-G-GGTTCSSCCEEECCSSCCCSSSTT-----GGGGGC
T ss_pred cCCCCCEEECCCCccC-cchhhhhhhhccccccccccccccc-C-ccccccccCeEECCCCccCCCCCc-----hhhcCC
Confidence 3444444444444444 3333444444444444444444432 2 244444455555544444433210 224444
Q ss_pred CCCCEEEccCCcCc
Q 040495 344 SKLERLYFNRNRFQ 357 (443)
Q Consensus 344 ~~L~~L~l~~n~l~ 357 (443)
++|++|++++|+++
T Consensus 90 ~~L~~L~l~~N~i~ 103 (124)
T d1dcea3 90 PRLVLLNLQGNSLC 103 (124)
T ss_dssp TTCCEEECTTSGGG
T ss_pred CCCCEEECCCCcCC
Confidence 55555555555444
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=99.32 E-value=1.1e-13 Score=117.40 Aligned_cols=146 Identities=21% Similarity=0.294 Sum_probs=107.8
Q ss_pred CCCCcEEeCCCC--cCCccCCccCcCCCCCCEEecccCcCccccchhhhCCCCCCEEEccCCCCcccCCCchhhHhhhcC
Q 040495 265 LPNLRQLSPNGN--NFTGSIPVSLSNASRLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLAN 342 (443)
Q Consensus 265 ~~~L~~L~L~~n--~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~ 342 (443)
....+.+++.+. .+. .+|..+..+++|++|++++|+++.. + .+..+++|+.|++++|.++.... ....
T Consensus 22 ~~~~~~~~l~~~~~~i~-~l~~sl~~L~~L~~L~Ls~n~I~~i-~-~l~~l~~L~~L~Ls~N~i~~i~~-------~~~~ 91 (198)
T d1m9la_ 22 ATEAEKVELHGMIPPIE-KMDATLSTLKACKHLALSTNNIEKI-S-SLSGMENLRILSLGRNLIKKIEN-------LDAV 91 (198)
T ss_dssp CTTCSCEECCBCCTTCC-CCHHHHHHTTTCCEEECSEEEESCC-C-CHHHHTTCCEEECCEEEECSCSS-------HHHH
T ss_pred ccccceeeeecccCchh-hhhhHHhcccccceeECcccCCCCc-c-cccCCccccChhhcccccccccc-------cccc
Confidence 344566666654 233 5567788899999999999998854 3 48889999999999998876432 2334
Q ss_pred CCCCCEEEccCCcCcccCChhHhhhccCCCEEeccCCcCeecCc-hhhhcCCCCCeEeCcCCcCcccCch----------
Q 040495 343 CSKLERLYFNRNRFQGVLPQSMANFSSTIKQIAMGRNRISGTIP-PGIRSHANLNWLTMDSNLFTGTIPP---------- 411 (443)
Q Consensus 343 ~~~L~~L~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l~~~~p-~~l~~~~~L~~L~L~~n~~~~~~p~---------- 411 (443)
+++|++|++++|+++ .++ .+..+ ++|+.|++++|++++.-. ..+..+++|++|++++|++....+.
T Consensus 92 ~~~L~~L~l~~N~i~-~l~-~~~~l-~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~ 168 (198)
T d1m9la_ 92 ADTLEELWISYNQIA-SLS-GIEKL-VNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIE 168 (198)
T ss_dssp HHHCCEEECSEEECC-CHH-HHHHH-HHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHH
T ss_pred ccccccccccccccc-ccc-ccccc-ccccccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHH
Confidence 467999999999998 343 35553 789999999999984321 4678899999999999988744332
Q ss_pred hhcCCCCCCEEE
Q 040495 412 VIGELKNLQLLD 423 (443)
Q Consensus 412 ~~~~l~~L~~L~ 423 (443)
.+..+++|+.||
T Consensus 169 vi~~lp~L~~LD 180 (198)
T d1m9la_ 169 VVKRLPNLKKLD 180 (198)
T ss_dssp HHHHCSSCCEES
T ss_pred HHHHCCCcCEeC
Confidence 256788999987
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=99.29 E-value=5.2e-14 Score=119.50 Aligned_cols=87 Identities=24% Similarity=0.303 Sum_probs=40.0
Q ss_pred ccccCCCCCCEEeCCCCcCCCCCchhhcCCCccCeEEccCCCCCCCCChhhhcCCCCceeeccCCcccccCCccccCCcC
Q 040495 92 PYVGNLSFLRYINLANNGFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSVDTNYLVGEIPSAIGSLFK 171 (443)
Q Consensus 92 ~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~ 171 (443)
..+..+++|++|++++|.++ .++ .+.++++|++|++++|.++ .+|.....+++|++|++++|+++. + +.+..+++
T Consensus 42 ~sl~~L~~L~~L~Ls~n~I~-~i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~~-l-~~~~~l~~ 116 (198)
T d1m9la_ 42 ATLSTLKACKHLALSTNNIE-KIS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-L-SGIEKLVN 116 (198)
T ss_dssp HHHHHTTTCCEEECSEEEES-CCC-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECCC-H-HHHHHHHH
T ss_pred hHHhcccccceeECcccCCC-Ccc-cccCCccccChhhcccccc-cccccccccccccccccccccccc-c-cccccccc
Confidence 34445555555555555554 222 2445555555555555544 333333333445555555554442 1 12334444
Q ss_pred ccEeeeeccccC
Q 040495 172 LERLFIFHNHIT 183 (443)
Q Consensus 172 L~~L~l~~n~l~ 183 (443)
|++|++++|.++
T Consensus 117 L~~L~L~~N~i~ 128 (198)
T d1m9la_ 117 LRVLYMSNNKIT 128 (198)
T ss_dssp SSEEEESEEECC
T ss_pred ccccccccchhc
Confidence 444444444444
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.24 E-value=2.1e-11 Score=98.80 Aligned_cols=102 Identities=15% Similarity=0.144 Sum_probs=46.5
Q ss_pred EeCCCCcCCccCCccCcCCCCCCEEecccC-cCccccchhhhCCCCCCEEEccCCCCcccCCCchhhHhhhcCCCCCCEE
Q 040495 271 LSPNGNNFTGSIPVSLSNASRLEMIEFSRN-QFSGRVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERL 349 (443)
Q Consensus 271 L~L~~n~l~~~~~~~l~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~L~~L 349 (443)
++..++++. ..|..+..+++|++|++++| .++...+..|..+++|+.|++++|+++...+ .+|..+++|++|
T Consensus 13 l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~------~~f~~l~~L~~L 85 (156)
T d2ifga3 13 LRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAP------DAFHFTPRLSRL 85 (156)
T ss_dssp EECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECT------TGGGSCSCCCEE
T ss_pred EEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCccc------ccccccccccce
Confidence 444444433 23334444444555555433 2444334444445555555555555544444 344445555555
Q ss_pred EccCCcCcccCChhHhhhccCCCEEeccCCcC
Q 040495 350 YFNRNRFQGVLPQSMANFSSTIKQIAMGRNRI 381 (443)
Q Consensus 350 ~l~~n~l~~~~p~~~~~~~~~L~~L~L~~n~l 381 (443)
+|++|+++ .+|...+.. ..++.|+|++|++
T Consensus 86 ~Ls~N~l~-~l~~~~~~~-~~l~~L~L~~Np~ 115 (156)
T d2ifga3 86 NLSFNALE-SLSWKTVQG-LSLQELVLSGNPL 115 (156)
T ss_dssp ECCSSCCS-CCCSTTTCS-CCCCEEECCSSCC
T ss_pred eccCCCCc-ccChhhhcc-ccccccccCCCcc
Confidence 55555554 344333332 2355555555544
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.22 E-value=2.3e-11 Score=98.59 Aligned_cols=93 Identities=14% Similarity=0.094 Sum_probs=59.6
Q ss_pred ccccccCCCCCCEEeCCCC-cCCCCCchhhcCCCccCeEEccCCCCCCCCChhhhcCCCCceeeccCCcccccCCccccC
Q 040495 90 LSPYVGNLSFLRYINLANN-GFLGEIPPQIGRLNMLEGLVLSNNSFSGTIPTNLSRRSNLIELSVDTNYLVGEIPSAIGS 168 (443)
Q Consensus 90 ~~~~~~~l~~L~~L~L~~n-~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~ 168 (443)
.|..+..+++|++|++++| .++...+.+|.++++|+.|++++|.++...|..|..+++|++|++++|+++ .+|.....
T Consensus 23 ~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~-~l~~~~~~ 101 (156)
T d2ifga3 23 SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQ 101 (156)
T ss_dssp TTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCS-CCCSTTTC
T ss_pred CcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCCCCc-ccChhhhc
Confidence 3455666777777777655 365444556777777777777777777555666777777777777777776 44443333
Q ss_pred CcCccEeeeeccccC
Q 040495 169 LFKLERLFIFHNHIT 183 (443)
Q Consensus 169 l~~L~~L~l~~n~l~ 183 (443)
..+|+.|++++|.+.
T Consensus 102 ~~~l~~L~L~~Np~~ 116 (156)
T d2ifga3 102 GLSLQELVLSGNPLH 116 (156)
T ss_dssp SCCCCEEECCSSCCC
T ss_pred cccccccccCCCccc
Confidence 345666666666553
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.34 E-value=5.1e-08 Score=78.86 Aligned_cols=81 Identities=19% Similarity=0.221 Sum_probs=36.0
Q ss_pred CCCCCCEEEccCCcCcccC--ChhHhhhccCCCEEeccCCcCeecCchhhhcCCCCCeEeCcCCcCcccCc-------hh
Q 040495 342 NCSKLERLYFNRNRFQGVL--PQSMANFSSTIKQIAMGRNRISGTIPPGIRSHANLNWLTMDSNLFTGTIP-------PV 412 (443)
Q Consensus 342 ~~~~L~~L~l~~n~l~~~~--p~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~L~~n~~~~~~p-------~~ 412 (443)
.+++|++|++++|+++..- +..+.. +++|+.|++++|.++..-+.......+|+.+++++|++..... ..
T Consensus 63 ~~~~L~~L~Ls~N~i~~l~~~~~~~~~-l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i 141 (162)
T d1koha1 63 NIPELLSLNLSNNRLYRLDDMSSIVQK-APNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAI 141 (162)
T ss_dssp HCTTCCCCCCCSSCCCCCSGGGTHHHH-STTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHH
T ss_pred hCCCCCEeeCCCccccCCchhHHHHhh-CCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHH
Confidence 3444444555555444211 111222 3455555555555553222122233345556666665553322 22
Q ss_pred hcCCCCCCEEE
Q 040495 413 IGELKNLQLLD 423 (443)
Q Consensus 413 ~~~l~~L~~L~ 423 (443)
+..+|+|+.||
T Consensus 142 ~~~~P~L~~LD 152 (162)
T d1koha1 142 RERFPKLLRLD 152 (162)
T ss_dssp HTTSTTCCEET
T ss_pred HHHCCCCCEEC
Confidence 44566666664
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=98.26 E-value=5.4e-07 Score=73.03 Aligned_cols=91 Identities=9% Similarity=0.091 Sum_probs=48.5
Q ss_pred hhhcCCCCCCEEEccCCcCcccCChhHhh---hccCCCEEeccCCcCeec----CchhhhcCCCCCeEeCcCCcCcc---
Q 040495 338 NLLANCSKLERLYFNRNRFQGVLPQSMAN---FSSTIKQIAMGRNRISGT----IPPGIRSHANLNWLTMDSNLFTG--- 407 (443)
Q Consensus 338 ~~~~~~~~L~~L~l~~n~l~~~~p~~~~~---~~~~L~~L~L~~n~l~~~----~p~~l~~~~~L~~L~L~~n~~~~--- 407 (443)
..+...++|++|++++|.++......+.. ..+.|+.|++++|.+++. +-..+...++|++|++++|.+..
T Consensus 38 ~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~ 117 (167)
T d1pgva_ 38 EAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGN 117 (167)
T ss_dssp HHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCH
T ss_pred HHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccH
Confidence 34555555666666666555322221211 135566666666666543 22344556667777777664331
Q ss_pred ----cCchhhcCCCCCCEEEccCCc
Q 040495 408 ----TIPPVIGELKNLQLLDLGGNF 428 (443)
Q Consensus 408 ----~~p~~~~~l~~L~~L~l~~n~ 428 (443)
.+.+.+...++|+.|+++.+.
T Consensus 118 ~~~~~l~~~L~~n~sL~~l~l~~~~ 142 (167)
T d1pgva_ 118 QVEMDMMMAIEENESLLRVGISFAS 142 (167)
T ss_dssp HHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred HHHHHHHHHHHhCCCccEeeCcCCC
Confidence 134445556777777776654
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=98.15 E-value=1.7e-06 Score=70.05 Aligned_cols=90 Identities=12% Similarity=0.142 Sum_probs=37.8
Q ss_pred CCCCCcEEeCCCC-cCCcc----CCccCcCCCCCCEEecccCcCccccch----hhhCCCCCCEEEccCCCCcccCCCch
Q 040495 264 NLPNLRQLSPNGN-NFTGS----IPVSLSNASRLEMIEFSRNQFSGRVSV----DFSRLKNLSFLNMGINNLGTRTANEL 334 (443)
Q Consensus 264 ~~~~L~~L~L~~n-~l~~~----~~~~l~~~~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~~~~ 334 (443)
+.+.|++|+++++ .++.. +-..+...+.|++|++++|.+...... .+...+.|+.|++++|.++.....
T Consensus 13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~-- 90 (167)
T d1pgva_ 13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA-- 90 (167)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH--
T ss_pred CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHH--
Confidence 3455666666543 34321 122334445555555555555432111 223334444444444444432211
Q ss_pred hhHhhhcCCCCCCEEEccCCc
Q 040495 335 DFINLLANCSKLERLYFNRNR 355 (443)
Q Consensus 335 ~~~~~~~~~~~L~~L~l~~n~ 355 (443)
.+..++...++|++|++++|.
T Consensus 91 ~l~~aL~~n~sL~~L~l~~n~ 111 (167)
T d1pgva_ 91 RLLRSTLVTQSIVEFKADNQR 111 (167)
T ss_dssp HHHHHTTTTCCCSEEECCCCS
T ss_pred HHHHHHHhCCcCCEEECCCCc
Confidence 111334444444444444443
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.14 E-value=8.5e-07 Score=71.44 Aligned_cols=106 Identities=12% Similarity=0.099 Sum_probs=71.4
Q ss_pred CCCEEecccCcCccccchhhhCCCCCCEEEccCCCCcccCCCchhhHhhhcCCCCCCEEEccCCcCcccCCh-hHhhhcc
Q 040495 291 RLEMIEFSRNQFSGRVSVDFSRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQ-SMANFSS 369 (443)
Q Consensus 291 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~-~~~~~~~ 369 (443)
.+..++...+.. ..++..+..++.|++|++++|+++...+. ...+..+++|+.|++++|.++ .+++ .... ..
T Consensus 43 ~~~~l~~~~~~~-~~l~~~~~~~~~L~~L~Ls~N~i~~l~~~----~~~~~~l~~L~~L~Ls~N~i~-~l~~l~~l~-~~ 115 (162)
T d1koha1 43 IDVVLNRRSSMA-ATLRIIEENIPELLSLNLSNNRLYRLDDM----SSIVQKAPNLKILNLSGNELK-SERELDKIK-GL 115 (162)
T ss_dssp CCCCTTSHHHHH-HHHHHHHHHCTTCCCCCCCSSCCCCCSGG----GTHHHHSTTCCCCCCTTSCCC-CGGGHHHHT-TC
T ss_pred chhhcchhhhHh-hhhHHHHHhCCCCCEeeCCCccccCCchh----HHHHhhCCcccccccccCccc-cchhhhhhh-cc
Confidence 333444433322 23344456789999999999999876431 144677899999999999998 4444 3333 35
Q ss_pred CCCEEeccCCcCeecCc-------hhhhcCCCCCeEeCcCCcC
Q 040495 370 TIKQIAMGRNRISGTIP-------PGIRSHANLNWLTMDSNLF 405 (443)
Q Consensus 370 ~L~~L~L~~n~l~~~~p-------~~l~~~~~L~~L~L~~n~~ 405 (443)
.++.+++++|++++... ..+..+++|+.|| |..+
T Consensus 116 ~L~~L~L~~Npl~~~~~~~~~y~~~i~~~~P~L~~LD--g~~v 156 (162)
T d1koha1 116 KLEELWLDGNSLSDTFRDQSTYISAIRERFPKLLRLD--GHEL 156 (162)
T ss_dssp CCSSCCCTTSTTSSSSSSHHHHHHHHHTTSTTCCEET--TEEC
T ss_pred ccceeecCCCCcCcCcccchhHHHHHHHHCCCCCEEC--cCCC
Confidence 68999999999986543 2356789999875 4444
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=97.93 E-value=3.4e-06 Score=68.11 Aligned_cols=92 Identities=16% Similarity=0.204 Sum_probs=44.9
Q ss_pred hhhcCCCCCCEEEccCCcCcccCChhHhh---hccCCCEEeccCCcCeec----CchhhhcCCCCCeEeC--cCCcCcc-
Q 040495 338 NLLANCSKLERLYFNRNRFQGVLPQSMAN---FSSTIKQIAMGRNRISGT----IPPGIRSHANLNWLTM--DSNLFTG- 407 (443)
Q Consensus 338 ~~~~~~~~L~~L~l~~n~l~~~~p~~~~~---~~~~L~~L~L~~n~l~~~----~p~~l~~~~~L~~L~L--~~n~~~~- 407 (443)
..+..+++|++|++++|.++...-..+.. ..+.++.+++++|.+.+. +...+...++|+.++| ++|.+..
T Consensus 40 ~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~ 119 (166)
T d1io0a_ 40 EALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNN 119 (166)
T ss_dssp HHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHH
T ss_pred HHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHHHHHHhCccccEEeeccCCCcCcHH
Confidence 33445555555555555554322222211 124555666665555433 2234455566665444 3445542
Q ss_pred ---cCchhhcCCCCCCEEEccCCcC
Q 040495 408 ---TIPPVIGELKNLQLLDLGGNFL 429 (443)
Q Consensus 408 ---~~p~~~~~l~~L~~L~l~~n~l 429 (443)
.+.+.+...+.|+.|+++.+..
T Consensus 120 ~~~~La~~L~~n~~L~~L~l~~~~~ 144 (166)
T d1io0a_ 120 VEMEIANMLEKNTTLLKFGYHFTQQ 144 (166)
T ss_dssp HHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHHHHHHHHHhCCCcCEEeCcCCCC
Confidence 2334445566677777665543
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=97.72 E-value=1.5e-05 Score=64.09 Aligned_cols=94 Identities=9% Similarity=0.055 Sum_probs=48.4
Q ss_pred hCCCCCCEEEccCCCCcccCCCchhhHhhhcCCCCCCEEEccCCcCcccCChhHhhh---ccCCCEEec--cCCcCeec-
Q 040495 311 SRLKNLSFLNMGINNLGTRTANELDFINLLANCSKLERLYFNRNRFQGVLPQSMANF---SSTIKQIAM--GRNRISGT- 384 (443)
Q Consensus 311 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~---~~~L~~L~L--~~n~l~~~- 384 (443)
...++|+.|++++|.++...... +...+...++++.+++++|.+.+..-..+... .++++.++| ++|.+...
T Consensus 43 ~~n~~L~~L~Ls~n~l~~~~~~~--L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~ 120 (166)
T d1io0a_ 43 KTNTYVKKFSIVGTRSNDPVAFA--LAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNV 120 (166)
T ss_dssp TTCCSCCEEECTTSCCCHHHHHH--HHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHH
T ss_pred hcCCccCeeeccCCcccHHHHHH--HHHHHhhcccchhhhhccccccchhHHHHHHHHHhCccccEEeeccCCCcCcHHH
Confidence 34555555555555554432211 11344555666666666666653322222211 245555443 44555442
Q ss_pred ---CchhhhcCCCCCeEeCcCCcCc
Q 040495 385 ---IPPGIRSHANLNWLTMDSNLFT 406 (443)
Q Consensus 385 ---~p~~l~~~~~L~~L~L~~n~~~ 406 (443)
+...+...++|+.|+++.+...
T Consensus 121 ~~~La~~L~~n~~L~~L~l~~~~~~ 145 (166)
T d1io0a_ 121 EMEIANMLEKNTTLLKFGYHFTQQG 145 (166)
T ss_dssp HHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHHhCCCcCEEeCcCCCCc
Confidence 3345567778888888776543
|