Citrus Sinensis ID: 040524
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 238 | ||||||
| 225443886 | 318 | PREDICTED: uncharacterized protein LOC10 | 1.0 | 0.748 | 0.746 | 1e-102 | |
| 224114263 | 305 | predicted protein [Populus trichocarpa] | 0.970 | 0.757 | 0.756 | 1e-95 | |
| 356557807 | 300 | PREDICTED: uncharacterized protein LOC10 | 1.0 | 0.793 | 0.705 | 1e-95 | |
| 18397373 | 311 | uncharacterized protein [Arabidopsis tha | 0.983 | 0.752 | 0.707 | 2e-93 | |
| 21618038 | 311 | unknown [Arabidopsis thaliana] | 0.983 | 0.752 | 0.707 | 3e-93 | |
| 356549106 | 318 | PREDICTED: uncharacterized protein LOC10 | 1.0 | 0.748 | 0.730 | 3e-92 | |
| 297845942 | 309 | hypothetical protein ARALYDRAFT_473232 [ | 0.983 | 0.757 | 0.711 | 6e-92 | |
| 28416661 | 311 | At1g30130 [Arabidopsis thaliana] gi|1107 | 0.983 | 0.752 | 0.698 | 1e-91 | |
| 357447263 | 311 | hypothetical protein MTR_2g019220 [Medic | 1.0 | 0.765 | 0.697 | 2e-90 | |
| 255557265 | 314 | conserved hypothetical protein [Ricinus | 0.995 | 0.754 | 0.743 | 9e-89 |
| >gi|225443886|ref|XP_002277705.1| PREDICTED: uncharacterized protein LOC100254825 [Vitis vinifera] gi|147866339|emb|CAN79921.1| hypothetical protein VITISV_002110 [Vitis vinifera] gi|297740736|emb|CBI30918.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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Score = 377 bits (967), Expect = e-102, Method: Compositional matrix adjust.
Identities = 180/241 (74%), Positives = 201/241 (83%), Gaps = 3/241 (1%)
Query: 1 MEIMYLLCSILSTAFTSLALSLLLPFRTLLRRRCPPRA---SSSYSSDPVSLYEGTVWHD 57
ME+ YLLCSILS FTSL LS LLPFR LLR C R+ S++ DPVSLYEGTVWH+
Sbjct: 1 MELFYLLCSILSAFFTSLVLSCLLPFRALLRCLCSSRSVGSSAATGEDPVSLYEGTVWHE 60
Query: 58 RRRPVRHSFKYPVRYALFDLDHAPQAPPDHLSAGEARRVAETNGPVLLLTIPPSVGYEQN 117
RRRPV HSF+Y VRYAL D+D AP PDHLS EARR+A T GPV LLTIPPSVGYEQN
Sbjct: 61 RRRPVHHSFRYAVRYALVDIDSAPNVLPDHLSGDEARRIAGTTGPVFLLTIPPSVGYEQN 120
Query: 118 PLSLYYCYDVEGSTQCLKKCIAEVTNTPWGERVTFVFNPKSDLVAKPLHVSPFMDMHGNW 177
PLSLYYCYD+ STQ LK+CIAEVTNTPWGERVTFVFNP DLVAKPLHVSPFMDM+GNW
Sbjct: 121 PLSLYYCYDLAASTQNLKQCIAEVTNTPWGERVTFVFNPNFDLVAKPLHVSPFMDMYGNW 180
Query: 178 SIRANAPGENLLVEISVQHPELGDYFVATLKAKRVSSQLMSDQDMFFWLMPHKVAFWIYW 237
SI+AN PG+NLLV I+VQHP+LG+YF ATL AK+VSS L+ D+++FFWLMPHKVA WIYW
Sbjct: 181 SIKANVPGDNLLVAITVQHPKLGNYFTATLTAKKVSSSLVVDRELFFWLMPHKVAIWIYW 240
Query: 238 H 238
H
Sbjct: 241 H 241
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224114263|ref|XP_002316711.1| predicted protein [Populus trichocarpa] gi|222859776|gb|EEE97323.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|356557807|ref|XP_003547202.1| PREDICTED: uncharacterized protein LOC100807625 [Glycine max] | Back alignment and taxonomy information |
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| >gi|18397373|ref|NP_564348.1| uncharacterized protein [Arabidopsis thaliana] gi|42571697|ref|NP_973939.1| uncharacterized protein [Arabidopsis thaliana] gi|12321635|gb|AAG50861.1|AC074176_10 unknown protein [Arabidopsis thaliana] gi|222423586|dbj|BAH19762.1| AT1G30130 [Arabidopsis thaliana] gi|332193061|gb|AEE31182.1| uncharacterized protein [Arabidopsis thaliana] gi|332193062|gb|AEE31183.1| uncharacterized protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|21618038|gb|AAM67088.1| unknown [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|356549106|ref|XP_003542938.1| PREDICTED: uncharacterized protein LOC100791856 [Glycine max] | Back alignment and taxonomy information |
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| >gi|297845942|ref|XP_002890852.1| hypothetical protein ARALYDRAFT_473232 [Arabidopsis lyrata subsp. lyrata] gi|297336694|gb|EFH67111.1| hypothetical protein ARALYDRAFT_473232 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
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| >gi|28416661|gb|AAO42861.1| At1g30130 [Arabidopsis thaliana] gi|110743324|dbj|BAE99550.1| hypothetical protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|357447263|ref|XP_003593907.1| hypothetical protein MTR_2g019220 [Medicago truncatula] gi|355482955|gb|AES64158.1| hypothetical protein MTR_2g019220 [Medicago truncatula] | Back alignment and taxonomy information |
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| >gi|255557265|ref|XP_002519663.1| conserved hypothetical protein [Ricinus communis] gi|223541080|gb|EEF42636.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 238 | ||||||
| TAIR|locus:2202471 | 311 | AT1G30130 "AT1G30130" [Arabido | 0.794 | 0.607 | 0.751 | 5.1e-81 | |
| UNIPROTKB|Q4K6A3 | 271 | PFL_5151 "Uncharacterized prot | 0.558 | 0.490 | 0.344 | 2.8e-15 | |
| UNIPROTKB|Q888B3 | 227 | PSPTO_1117 "Uncharacterized pr | 0.558 | 0.585 | 0.340 | 4.4e-13 | |
| UNIPROTKB|Q8EBW5 | 263 | SO_3380 "Uncharacterized prote | 0.491 | 0.444 | 0.312 | 1.4e-11 | |
| TIGR_CMR|SO_3380 | 263 | SO_3380 "conserved hypothetica | 0.491 | 0.444 | 0.312 | 1.4e-11 | |
| UNIPROTKB|Q0C193 | 269 | HNE_1796 "Putative uncharacter | 0.529 | 0.468 | 0.335 | 2.3e-08 | |
| UNIPROTKB|Q9KSY5 | 269 | VC_1121 "Putative uncharacteri | 0.630 | 0.557 | 0.276 | 3.9e-08 | |
| TIGR_CMR|VC_1121 | 269 | VC_1121 "conserved hypothetica | 0.630 | 0.557 | 0.276 | 3.9e-08 | |
| UNIPROTKB|Q485Y8 | 272 | CPS_1384 "Putative uncharacter | 0.554 | 0.485 | 0.302 | 2.1e-07 | |
| TIGR_CMR|CPS_1384 | 272 | CPS_1384 "conserved hypothetic | 0.554 | 0.485 | 0.302 | 2.1e-07 |
| TAIR|locus:2202471 AT1G30130 "AT1G30130" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 790 (283.2 bits), Expect = 5.1e-81, Sum P(2) = 5.1e-81
Identities = 142/189 (75%), Positives = 158/189 (83%)
Query: 50 YEGTVWHDRRRPVRHSFKYPVRYALFDLDHAPQAPPDHLSAGEARRVAETNGPVLLLTIP 109
YEGTVWHDR RPVRHSF+Y VRYALFDLD A PPDH SA EARRV+ T GP+ LLTIP
Sbjct: 47 YEGTVWHDRLRPVRHSFRYSVRYALFDLDKAINTPPDHFSADEARRVSRTTGPIFLLTIP 106
Query: 110 PSVGYEQNPLSLYYCYDVEGSTQCLKKCIAEVTNTPWGERVTFVFNPKSDLVAKPLHVSP 169
PSVGYEQNPLSLYYCYD+EGS++ L KCIA+VTNTPWGERVTFVF+P+SDLVAK L VSP
Sbjct: 107 PSVGYEQNPLSLYYCYDLEGSSKRLSKCIAQVTNTPWGERVTFVFDPESDLVAKSLQVSP 166
Query: 170 FMDMHGNWSIRANAPGENLLVEISVQHPELGDYFVATLKAKRVSSQLMSDQDMFFWLMPH 229
FMDM GNW IRAN PG++L V I+ QHP G+YF ATLKAKR+ +SD +FFWLMPH
Sbjct: 167 FMDMLGNWKIRANEPGDDLSVSIASQHPHFGNYFSATLKAKRIPLSRVSDPAVFFWLMPH 226
Query: 230 KVAFWIYWH 238
KVA WIYWH
Sbjct: 227 KVAIWIYWH 235
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| UNIPROTKB|Q4K6A3 PFL_5151 "Uncharacterized protein" [Pseudomonas protegens Pf-5 (taxid:220664)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q888B3 PSPTO_1117 "Uncharacterized protein" [Pseudomonas syringae pv. tomato str. DC3000 (taxid:223283)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q8EBW5 SO_3380 "Uncharacterized protein" [Shewanella oneidensis MR-1 (taxid:211586)] | Back alignment and assigned GO terms |
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| TIGR_CMR|SO_3380 SO_3380 "conserved hypothetical protein" [Shewanella oneidensis MR-1 (taxid:211586)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q0C193 HNE_1796 "Putative uncharacterized protein" [Hyphomonas neptunium ATCC 15444 (taxid:228405)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q9KSY5 VC_1121 "Putative uncharacterized protein" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] | Back alignment and assigned GO terms |
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| TIGR_CMR|VC_1121 VC_1121 "conserved hypothetical protein" [Vibrio cholerae O1 biovar El Tor (taxid:686)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q485Y8 CPS_1384 "Putative uncharacterized protein" [Colwellia psychrerythraea 34H (taxid:167879)] | Back alignment and assigned GO terms |
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| TIGR_CMR|CPS_1384 CPS_1384 "conserved hypothetical protein" [Colwellia psychrerythraea 34H (taxid:167879)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| GSVIVG00028313001 | SubName- Full=Chromosome chr10 scaffold_43, whole genome shotgun sequence; (311 aa) | ||||||||||
(Vitis vinifera) | |||||||||||
| GSVIVG00020325001 | • | • | 0.700 | ||||||||
| GSVIVG00020324001 | • | • | 0.682 | ||||||||
| GSVIVG00032227001 | • | • | 0.611 | ||||||||
| GSVIVG00017810001 | • | • | 0.561 | ||||||||
| GSVIVG00020327001 | • | • | 0.550 | ||||||||
| GSVIVG00020323001 | • | 0.504 | |||||||||
| GSVIVG00000320001 | • | 0.477 |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 238 | |||
| pfam07103 | 244 | pfam07103, DUF1365, Protein of unknown function (D | 3e-60 | |
| COG3496 | 261 | COG3496, COG3496, Uncharacterized conserved protei | 6e-31 |
| >gnl|CDD|219297 pfam07103, DUF1365, Protein of unknown function (DUF1365) | Back alignment and domain information |
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Score = 189 bits (482), Expect = 3e-60
Identities = 83/229 (36%), Positives = 105/229 (45%), Gaps = 42/229 (18%)
Query: 47 VSLYEGTVWHDRRRPVRHSFKYPVRYALFDLDHAPQAP------------------PDHL 88
+LY GTV H R RPVRH+F+Y V L DLD P+ P DHL
Sbjct: 1 SALYVGTVRHRRFRPVRHAFRYRVFMLLLDLDELPELPRLSRLFSRNRFNLASFRRRDHL 60
Query: 89 SAGEARRVAE------------TNGPVLLLTIPPSVGYEQNPLSLYYCYDVEGSTQCLKK 136
+ +G V LLT P +GY NP+S YYCYD +G L+
Sbjct: 61 GGPLDGALRAWVEALLAATGLDLDGRVRLLTQPRVLGYVFNPVSFYYCYDADGQ---LRA 117
Query: 137 CIAEVTNTPWGERVTFVF-----NPKSDLVAKPLHVSPFMDMHGNWSIRANAPGENLLVE 191
+AEV+NT WGER +++ P V K HVSPFM M G + R + PGE L V
Sbjct: 118 VLAEVSNT-WGERHSYLLPVDGGEPDRLQVDKAFHVSPFMPMDGRYRFRFSPPGERLRVH 176
Query: 192 ISVQHPELGDYFVATLKAKRV--SSQLMSDQDMFFWLMPHKVAFWIYWH 238
I H G F ATL +R + + + + LM KV IYW
Sbjct: 177 IDN-HRGGGPVFDATLAGRRRPLTRAALLRALLRYPLMTLKVIAGIYWQ 224
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This family consists of several bacterial and plant proteins of around 250 residues in length. The function of this family is unknown. Length = 244 |
| >gnl|CDD|226027 COG3496, COG3496, Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
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Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 238 | |||
| PF07103 | 254 | DUF1365: Protein of unknown function (DUF1365); In | 100.0 | |
| COG3496 | 261 | Uncharacterized conserved protein [Function unknow | 100.0 |
| >PF07103 DUF1365: Protein of unknown function (DUF1365); InterPro: IPR010775 This family consists of several bacterial and plant proteins of around 250 residues in length | Back alignment and domain information |
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Probab=100.00 E-value=1.6e-70 Score=491.09 Aligned_cols=188 Identities=40% Similarity=0.648 Sum_probs=168.0
Q ss_pred eeEEEEEEEeecCCCCCCcccccceEEEEeCCCCCCCC------------------CCCCCh-----hh-----------
Q 040524 47 VSLYEGTVWHDRRRPVRHSFKYPVRYALFDLDHAPQAP------------------PDHLSA-----GE----------- 92 (238)
Q Consensus 47 ~~ly~g~V~H~R~~P~~H~F~Y~~~~~~lDLDel~~~~------------------~Dhl~~-----~~----------- 92 (238)
|+||.|+|+|+|+.|++|+|+|+++|+++||||+++++ +|||+. ++
T Consensus 1 S~ly~g~v~H~R~~P~~h~F~Y~~~~~~lDLd~l~~~~~~~~~fs~~r~~l~sf~~~Dyl~~~~~~~~~~l~~~v~~~l~ 80 (254)
T PF07103_consen 1 SALYVGRVRHRRFRPKRHRFSYPVFMLLLDLDELEQLFRKSRLFSRNRFNLFSFRDRDYLGDPSGSLDGSLREWVEALLA 80 (254)
T ss_pred CeEEEEEEEEccCCCCCceEecceEEEEEEcchhhhccccccccccCCccEeEEeHHHcCCCCCCChhHHHHHHHHHhhh
Confidence 68999999999999999999999999999999999653 489742 11
Q ss_pred hcccccCCCcEEEEecCCccceeeCccEEEEEEeCCCCccceeEEEEEeeCCCCCceEEEEecCCCC---------ccCc
Q 040524 93 ARRVAETNGPVLLLTIPPSVGYEQNPLSLYYCYDVEGSTQCLKKCIAEVTNTPWGERVTFVFNPKSD---------LVAK 163 (238)
Q Consensus 93 ~~~i~~~~g~I~LLT~pR~lGy~FNPVSfYyc~d~~~~~~~L~avlaEV~NTPfgERH~Yvl~~~~~---------~~~K 163 (238)
+.|++.. |+|+|||+||+|||+|||||||||||++| +|++||||||||||||||+|++++++. .++|
T Consensus 81 ~~g~~~~-g~I~Llt~pR~lGy~FNPvSfyyc~d~~~---~l~~vvaEV~NTPfgErH~Yvl~~~~~~~~~~~~~~~~~K 156 (254)
T PF07103_consen 81 EHGIDPD-GRIYLLTMPRYLGYVFNPVSFYYCYDADG---QLRAVVAEVNNTPFGERHCYVLPADQGRPIDESFRFTFPK 156 (254)
T ss_pred hcCCCCC-CEEEEEechhhCCeEeCCeEEEEEEcCCC---CEEEEEEEEeCCCCCcEEEEEecccccCccCcCceeEecc
Confidence 1344445 99999999999999999999999999998 599999999999999999999998521 5899
Q ss_pred ceeeCCCCCCCceEEEEEeCCCCeeEEEEEEecCC--CCcEEEEEeeeecccCChhh--hHHHHhhhhHHhhheeeeeC
Q 040524 164 PLHVSPFMDMHGNWSIRANAPGENLLVEISVQHPE--LGDYFVATLKAKRVSSQLMS--DQDMFFWLMPHKVAFWIYWH 238 (238)
Q Consensus 164 ~FHVSPF~~m~g~Y~f~~~~p~~~l~i~I~~~~~~--~~~~f~Atl~g~r~plt~~~--~l~~~~p~~tlkvi~~IyWQ 238 (238)
+|||||||||+|+|+|+++.|++++.|+|++.+++ +++.|+|+|+|+++|+|+++ +...++|+||+||+++||||
T Consensus 157 ~FHVSPF~~~~g~Y~~~~~~p~~~l~v~I~~~~~~~~~~~~~~Atl~~~~~plt~~~l~~~~~~~P~~t~~v~~~I~wq 235 (254)
T PF07103_consen 157 AFHVSPFNPMDGRYRFRFRDPGDRLSVRIDLYDDRDGGQKVFDATLRGKRRPLTTASLLRALLRYPLMTFKVVARIHWQ 235 (254)
T ss_pred eeeECCCCCCCCEEEEEEcCCCcceEEEEEeecCccCCCceEEEEeEeecccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998443 47899999999999999999 34556999999999999998
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The function of this family is unknown. |
| >COG3496 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
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Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
No hit with e-value below 0.005
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 80.00