Citrus Sinensis ID: 040542


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250
MASSRLPLFLCSIVLQLVAHTIAQQDTPLDELCLSEMGNFTKKSKYKANLDRVLSTISSNTKISYGFYTASYGRNNDQVNAMALCRGDVNPNSCRSCIKTSAVELRKHCPNQKEAVIWYDYCMLRYSNRYFFGNMEFGPWFWMYNLHNVSDATTFNRDVATLLNILKNKATSGDNCRKFATGNATTTNSLTIYALVQCTPDLEKQQCIDCLNNATALLPKCCDGRQGGRVIAPSCNFRYEIGRFYDLTVT
cccccHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHccccccccEEEEccccccEEEEEEEcccccccccHHHHHHHHHHHHHHcccccccEEEEcccEEEEEcccccccccccccEEEEEcccccccHHHHHHHHHHHHHHHHHHHccccccccEEEEEEEEcccccEEEEEEEcccccHHHHHHHHHHHHHHHccccccccEEEEEcccEEEEEEcccccccccc
ccHHHHHHHHHHHHHHHHHHHHHccccccHccccccccccccccHHHHHHHHHHHHcccccccccccEEccccccccEEEEEEEEcccccHHHHHHHHHHHHHHHHHHccccccEEEEEccEEEEEEcccccccccccccEEEEcccccccHHHHHHHHHHHHHHHHHHHHccccccHEEccccccccccEEEEEEEEcccccHHHHHHHHHHHHHHcHHHcccccccEEEccccEEEEEEccccccccc
massrlplFLCSIVLQLVAHTiaqqdtpldelclsemgnftkkskyKANLDRVLSTISSNTKISYGFYtasygrnndQVNAMALcrgdvnpnscrscIKTSAVELRkhcpnqkeaVIWYDYCMLRysnryffgnmefgpwfwmynlhnvsdattfNRDVATLLNILKNkatsgdncrkfatgnatttnsLTIYALVQctpdlekqqCIDCLNNatallpkccdgrqggrviapscnfryeigrfydltvt
MASSRLPLFLCSIVLQLVAHTIAQQDTPLDELCLSEMGNftkkskykanLDRVLSTISSNTKISYGFYTASYGRNNDQVNAMALCRGDVNPNSCRSCIKTSAvelrkhcpnqkeaVIWYDYCMLRYSNRYFFGNMEFGPWFWMYNLHNVSDATTFNRDVATLLNILKnkatsgdncRKFAtgnatttnsLTIYALVQCTPDLEKQQCIDCLNNATALLPKCCDGRQGGrviapscnfryeigrfydltvt
MASSRLPLFLCSIVLQLVAHTIAQQDTPLDELCLSEMGNFTKKSKYKANLDRVLSTISSNTKISYGFYTASYGRNNDQVNAMALCRGDVNPNSCRSCIKTSAVELRKHCPNQKEAVIWYDYCMLRYSNRYFFGNMEFGPWFWMYNLHNVSDATTFNRDVATLLNILKNKATSGDNCRKFATGNATTTNSLTIYALVQCTPDLEKQQCIDCLNNATALLPKCCDGRQGGRVIAPSCNFRYEIGRFYDLTVT
*****LPLFLCSIVLQLVAHTIAQQDTPLDELCLSEMGNFTKKSKYKANLDRVLSTISSNTKISYGFYTASYGRNNDQVNAMALCRGDVNPNSCRSCIKTSAVELRKHCPNQKEAVIWYDYCMLRYSNRYFFGNMEFGPWFWMYNLHNVSDATTFNRDVATLLNILKNKATSGDNCRKFATGNATTTNSLTIYALVQCTPDLEKQQCIDCLNNATALLPKCCDGRQGGRVIAPSCNFRYEIGRFYDLT**
***SRLPLFLCSIVLQLVAHTIAQQDTPLDELCLSEMGNFTKKSKYKANLDRVLSTISSNTKISYGFYTASYGRNNDQVNAMALCRGDVNPNSCRSCIKTSAVELRKHCPNQKEAVIWYDYCMLRYSNRYFFGNMEFGPWFWMYNLHNVSDATTFNRDVATLLNILKNKATSGDNCRKFATGNATTTNSLTIYALVQCTPDLEKQQCIDCLNNATALLPKCCDGRQGGRVIAPSCNFRYEIGRFYDLT**
MASSRLPLFLCSIVLQLVAHTIAQQDTPLDELCLSEMGNFTKKSKYKANLDRVLSTISSNTKISYGFYTASYGRNNDQVNAMALCRGDVNPNSCRSCIKTSAVELRKHCPNQKEAVIWYDYCMLRYSNRYFFGNMEFGPWFWMYNLHNVSDATTFNRDVATLLNILKNKATSGDNCRKFATGNATTTNSLTIYALVQCTPDLEKQQCIDCLNNATALLPKCCDGRQGGRVIAPSCNFRYEIGRFYDLTVT
*ASSRLPLFLCSIVLQLVAHTIAQQDTPLDELCLSEMGNFTKKSKYKANLDRVLSTISSNTKISYGFYTASYGRNNDQVNAMALCRGDVNPNSCRSCIKTSAVELRKHCPNQKEAVIWYDYCMLRYSNRYFFGNMEFGPWFWMYNLHNVSDATTFNRDVATLLNILKNKATSGDNCRKFATGNATTTNSLTIYALVQCTPDLEKQQCIDCLNNATALLPKCCDGRQGGRVIAPSCNFRYEIGRFYD****
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiii
SSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MASSRLPLFLCSIVLQLVAHTIAQQDTPLDELCLSEMGNFTKKSKYKANLDRVLSTISSNTKISYGFYTASYGRNNDQVNAMALCRGDVNPNSCRSCIKTSAVELRKHCPNQKEAVIWYDYCMLRYSNRYFFGNMEFGPWFWMYNLHNVSDATTFNRDVATLLNILKNKATSGDNCRKFATGNATTTNSLTIYALVQCTPDLEKQQCIDCLNNATALLPKCCDGRQGGRVIAPSCNFRYEIGRFYDLTVT
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query250 2.2.26 [Sep-21-2011]
Q9LRJ9252 Cysteine-rich repeat secr yes no 0.932 0.924 0.439 4e-52
Q9T0J1 665 Cysteine-rich receptor-li no no 0.928 0.348 0.384 1e-44
Q9M0X5 675 Cysteine-rich receptor-li no no 0.948 0.351 0.420 3e-44
O49564 642 Cysteine-rich receptor-li no no 0.888 0.345 0.424 3e-44
Q8S9L6 679 Cysteine-rich receptor-li no no 0.984 0.362 0.391 3e-39
Q9LRL7279 Putative cysteine-rich re no no 0.964 0.863 0.370 1e-38
Q9LRL4262 Putative cysteine-rich re no no 0.976 0.931 0.344 2e-38
Q9LRL8256 Putative cysteine-rich re no no 0.94 0.917 0.369 6e-38
Q9LRK8256 Cysteine-rich repeat secr no no 0.94 0.917 0.359 4e-37
Q9SVI0266 Cysteine-rich repeat secr no no 0.936 0.879 0.356 1e-36
>sp|Q9LRJ9|CRR38_ARATH Cysteine-rich repeat secretory protein 38 OS=Arabidopsis thaliana GN=CRRSP38 PE=2 SV=1 Back     alignment and function desciption
 Score =  204 bits (520), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 105/239 (43%), Positives = 149/239 (62%), Gaps = 6/239 (2%)

Query: 10  LCSIVLQLVA-HTI---AQQDTPLDELCLSEMGNFTKKSKYKANLDRVLSTISSNTKISY 65
           + +I +Q+++ HT+   +Q +  L   C    G+FT KS Y++NL+ + S +S     S 
Sbjct: 12  ILAIAIQILSIHTVLSQSQNNAFLFHKCSDIEGSFTSKSLYESNLNNLFSQLSYKVP-ST 70

Query: 66  GFYTASYGRNNDQVNAMALCRGDVNPNSCRSCIKTSAVELRKHCPNQKEAVIWYDYCMLR 125
           GF  +S G   + VN +ALCRGD + + CRSC++T+  ELR+ CPN K  ++WYD C+++
Sbjct: 71  GFAASSTGNTPNNVNGLALCRGDASSSDCRSCLETAIPELRQRCPNNKAGIVWYDNCLVK 130

Query: 126 YSNRYFFGNMEFGPWFWMYNLHNVSDATTFNRDVATLLNILKNKATSGDNCRKFATGNAT 185
           YS+  FFG ++F   F++YN+ NVSD +TFN     LL  L  KAT+ DN + FATG   
Sbjct: 131 YSSTNFFGKIDFENRFYLYNVKNVSDPSTFNSQTKALLTELTKKATTRDNQKLFATGEKN 190

Query: 186 TTNSLTIYALVQCTPDLEKQQCIDCLNNATALLPKCCDGRQGGRVIAPSCNFRYEIGRF 244
              +  +Y LVQCT DL+   C  CLN     LP CCDG++GGRV+  SCNFRYEI  F
Sbjct: 191 IGKN-KLYGLVQCTRDLKSITCKACLNGIIGELPNCCDGKEGGRVVGGSCNFRYEIYPF 248





Arabidopsis thaliana (taxid: 3702)
>sp|Q9T0J1|CRK26_ARATH Cysteine-rich receptor-like protein kinase 26 OS=Arabidopsis thaliana GN=CRK26 PE=2 SV=1 Back     alignment and function description
>sp|Q9M0X5|CRK25_ARATH Cysteine-rich receptor-like protein kinase 25 OS=Arabidopsis thaliana GN=CRK25 PE=2 SV=1 Back     alignment and function description
>sp|O49564|CRK27_ARATH Cysteine-rich receptor-like protein kinase 27 OS=Arabidopsis thaliana GN=CRK27 PE=3 SV=2 Back     alignment and function description
>sp|Q8S9L6|CRK29_ARATH Cysteine-rich receptor-like protein kinase 29 OS=Arabidopsis thaliana GN=CRK29 PE=2 SV=1 Back     alignment and function description
>sp|Q9LRL7|CRR22_ARATH Putative cysteine-rich repeat secretory protein 22 OS=Arabidopsis thaliana GN=CRRSP22 PE=5 SV=2 Back     alignment and function description
>sp|Q9LRL4|CRR24_ARATH Putative cysteine-rich repeat secretory protein 24 OS=Arabidopsis thaliana GN=CRRSP24 PE=2 SV=1 Back     alignment and function description
>sp|Q9LRL8|CRR21_ARATH Putative cysteine-rich repeat secretory protein 21 OS=Arabidopsis thaliana GN=CRRSP21 PE=5 SV=2 Back     alignment and function description
>sp|Q9LRK8|CRR29_ARATH Cysteine-rich repeat secretory protein 29 OS=Arabidopsis thaliana GN=CRRSP29 PE=2 SV=1 Back     alignment and function description
>sp|Q9SVI0|CRR41_ARATH Cysteine-rich repeat secretory protein 41 OS=Arabidopsis thaliana GN=CRRSP41 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query250
224113937318 predicted protein [Populus trichocarpa] 0.984 0.773 0.598 6e-80
224107309257 predicted protein [Populus trichocarpa] 0.996 0.968 0.549 6e-74
255555039295 DUF26 domain-containing protein 1 precur 0.948 0.803 0.521 1e-68
147811956 839 hypothetical protein VITISV_019620 [Viti 0.988 0.294 0.530 2e-68
358347848 671 Cysteine-rich receptor-like protein kina 0.936 0.348 0.531 1e-65
358347946 552 Cysteine-rich receptor-like protein kina 0.936 0.423 0.531 2e-65
359497268 675 PREDICTED: cysteine-rich receptor-like p 0.988 0.365 0.514 6e-64
296088918 519 unnamed protein product [Vitis vinifera] 0.988 0.475 0.514 9e-64
356575759 687 PREDICTED: cysteine-rich receptor-like p 0.964 0.350 0.506 2e-63
356575761 679 PREDICTED: cysteine-rich receptor-like p 0.964 0.354 0.506 2e-63
>gi|224113937|ref|XP_002316619.1| predicted protein [Populus trichocarpa] gi|222859684|gb|EEE97231.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  303 bits (775), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 149/249 (59%), Positives = 180/249 (72%), Gaps = 3/249 (1%)

Query: 1   MASSRLPLFLCSIVLQLVAHTIAQQDTPLDELCLSEMGNFTKKSKYKANLDRVLSTISSN 60
           MA+S+L  F C I + L+  +IAQ D PL   C S+ GNFT  S YK+NL+ +LS+ SSN
Sbjct: 5   MAASKLLFFFCPIFIYLLVLSIAQAD-PLYHFC-SKTGNFTNSSDYKSNLNNLLSSFSSN 62

Query: 61  TKISYGFYTASYGRNNDQVNAMALCRGDVNPNSCRSCIKTSAVELRKHCPNQKEAVIWYD 120
           TKI YGFY  SYG+NND+V A++LCRGD  P +CRSCI  S+  L + CPNQKEA IWYD
Sbjct: 63  TKIDYGFYNDSYGQNNDKVTAISLCRGDKKPETCRSCITNSSQVLTQLCPNQKEAYIWYD 122

Query: 121 YCMLRYSNRYFFGNMEFGPWFWMYNLHNVSDATTFNRDVATLLNILKNKATSGDNCRKFA 180
            CMLRYSNR+  G+MEFGP FWMYN++NV+D   F   +  LL  L N A  GD+ RKFA
Sbjct: 123 DCMLRYSNRFIVGSMEFGPHFWMYNVNNVTDEKEFYEKLNVLLGNLTNLAALGDSRRKFA 182

Query: 181 TGNATTTNS-LTIYALVQCTPDLEKQQCIDCLNNATALLPKCCDGRQGGRVIAPSCNFRY 239
           TGNATT NS   +YALVQCTPDL +QQC DCLN A  L+P CC  RQGGRV++PSC+FRY
Sbjct: 183 TGNATTENSQQKMYALVQCTPDLTRQQCSDCLNQAIKLIPTCCSKRQGGRVVSPSCHFRY 242

Query: 240 EIGRFYDLT 248
           E   FY+L 
Sbjct: 243 EKDPFYELV 251




Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224107309|ref|XP_002333535.1| predicted protein [Populus trichocarpa] gi|118488745|gb|ABK96183.1| unknown [Populus trichocarpa] gi|222837111|gb|EEE75490.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255555039|ref|XP_002518557.1| DUF26 domain-containing protein 1 precursor, putative [Ricinus communis] gi|223542402|gb|EEF43944.1| DUF26 domain-containing protein 1 precursor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|147811956|emb|CAN74851.1| hypothetical protein VITISV_019620 [Vitis vinifera] Back     alignment and taxonomy information
>gi|358347848|ref|XP_003637963.1| Cysteine-rich receptor-like protein kinase [Medicago truncatula] gi|355503898|gb|AES85101.1| Cysteine-rich receptor-like protein kinase [Medicago truncatula] Back     alignment and taxonomy information
>gi|358347946|ref|XP_003638011.1| Cysteine-rich receptor-like protein kinase, partial [Medicago truncatula] gi|355503946|gb|AES85149.1| Cysteine-rich receptor-like protein kinase, partial [Medicago truncatula] Back     alignment and taxonomy information
>gi|359497268|ref|XP_003635466.1| PREDICTED: cysteine-rich receptor-like protein kinase 25-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|296088918|emb|CBI38478.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356575759|ref|XP_003556004.1| PREDICTED: cysteine-rich receptor-like protein kinase 29-like isoform 1 [Glycine max] Back     alignment and taxonomy information
>gi|356575761|ref|XP_003556005.1| PREDICTED: cysteine-rich receptor-like protein kinase 29-like isoform 2 [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query250
TAIR|locus:2095662252 AT3G22060 "AT3G22060" [Arabido 0.968 0.960 0.436 4.4e-52
TAIR|locus:2141762 665 CRK26 "cysteine-rich RLK (RECE 0.976 0.366 0.387 1e-45
TAIR|locus:2115728 675 CRK25 "cysteine-rich RLK (RECE 0.948 0.351 0.420 1.3e-44
TAIR|locus:2127323 642 CRK27 "cysteine-rich RLK (RECE 0.964 0.375 0.411 1.2e-42
TAIR|locus:2141201 679 CRK29 "cysteine-rich RLK (RECE 0.94 0.346 0.408 4.3e-41
TAIR|locus:2095642256 AT3G21990 "AT3G21990" [Arabido 0.936 0.914 0.360 3e-37
TAIR|locus:2095582 441 AT3G21960 [Arabidopsis thalian 0.904 0.512 0.352 2.1e-36
TAIR|locus:2085470258 AT3G58310 "AT3G58310" [Arabido 0.848 0.821 0.376 9.2e-36
TAIR|locus:2065878255 AT2G31620 "AT2G31620" [Arabido 0.884 0.866 0.334 8.3e-35
TAIR|locus:2830202260 AT3G21945 "AT3G21945" [Arabido 0.888 0.853 0.376 1.1e-34
TAIR|locus:2095662 AT3G22060 "AT3G22060" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 540 (195.1 bits), Expect = 4.4e-52, P = 4.4e-52
 Identities = 109/250 (43%), Positives = 155/250 (62%)

Query:     1 MAS-SRLPLF-LCSIVLQLVA-HTI---AQQDTPLDELCLSEMGNFTKKSKYKANLDRVL 54
             M+S  R+  F + +I +Q+++ HT+   +Q +  L   C    G+FT KS Y++NL+ + 
Sbjct:     1 MSSLKRIVWFPILAIAIQILSIHTVLSQSQNNAFLFHKCSDIEGSFTSKSLYESNLNNLF 60

Query:    55 STISSNTKISYGFYTASYGRNNDQVNAMALCRGDVNPNSCRSCIKTSAVELRKHCPNQKE 114
             S +S     S GF  +S G   + VN +ALCRGD + + CRSC++T+  ELR+ CPN K 
Sbjct:    61 SQLSYKVP-STGFAASSTGNTPNNVNGLALCRGDASSSDCRSCLETAIPELRQRCPNNKA 119

Query:   115 AVIWYDYCMLRYSNRYFFGNMEFGPWFWMYNLHNVSDATTFNRDVATLLNILKNKATSGD 174
              ++WYD C+++YS+  FFG ++F   F++YN+ NVSD +TFN     LL  L  KAT+ D
Sbjct:   120 GIVWYDNCLVKYSSTNFFGKIDFENRFYLYNVKNVSDPSTFNSQTKALLTELTKKATTRD 179

Query:   175 NCRKFATGNATTTNSLTIYALVQCTPDLEKQQCIDCLNNATALLPKCCDGRQGGRVIAPS 234
             N + FATG      +  +Y LVQCT DL+   C  CLN     LP CCDG++GGRV+  S
Sbjct:   180 NQKLFATGEKNIGKN-KLYGLVQCTRDLKSITCKACLNGIIGELPNCCDGKEGGRVVGGS 238

Query:   235 CNFRYEIGRF 244
             CNFRYEI  F
Sbjct:   239 CNFRYEIYPF 248




GO:0003674 "molecular_function" evidence=ND
GO:0005576 "extracellular region" evidence=ISM
GO:0005773 "vacuole" evidence=IDA
GO:0005618 "cell wall" evidence=IDA
GO:0009737 "response to abscisic acid stimulus" evidence=IEP
GO:0002237 "response to molecule of bacterial origin" evidence=RCA
TAIR|locus:2141762 CRK26 "cysteine-rich RLK (RECEPTOR-like protein kinase) 26" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2115728 CRK25 "cysteine-rich RLK (RECEPTOR-like protein kinase) 25" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2127323 CRK27 "cysteine-rich RLK (RECEPTOR-like protein kinase) 27" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2141201 CRK29 "cysteine-rich RLK (RECEPTOR-like protein kinase) 29" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2095642 AT3G21990 "AT3G21990" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2095582 AT3G21960 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2085470 AT3G58310 "AT3G58310" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2065878 AT2G31620 "AT2G31620" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2830202 AT3G21945 "AT3G21945" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9LRJ9CRR38_ARATHNo assigned EC number0.43930.9320.9246yesno

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Fail to connect to STRING server


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query250
pfam01657106 pfam01657, Stress-antifung, Salt stress response/a 1e-30
pfam01657106 pfam01657, Stress-antifung, Salt stress response/a 1e-21
>gnl|CDD|216632 pfam01657, Stress-antifung, Salt stress response/antifungal Back     alignment and domain information
 Score =  109 bits (274), Expect = 1e-30
 Identities = 42/97 (43%), Positives = 61/97 (62%), Gaps = 3/97 (3%)

Query: 38  GNFTKK-SKYKANLDRVLSTISSN--TKISYGFYTASYGRNNDQVNAMALCRGDVNPNSC 94
           GN+T   S +++NL+ +LS++SSN  +    GF   + G   D V  +A CRGD++ + C
Sbjct: 10  GNYTTANSTFESNLNALLSSLSSNAASSSGKGFAAGTSGAAPDTVYGLAQCRGDLSASDC 69

Query: 95  RSCIKTSAVELRKHCPNQKEAVIWYDYCMLRYSNRYF 131
           RSC+ T+  ELR+ CPN+K   IWYD C LRY +  F
Sbjct: 70  RSCLATAVSELRRCCPNKKGGRIWYDSCFLRYESYPF 106


This domain is often found in association with the kinase domains pfam00069 or pfam07714. In many proteins it is duplicated. It contains six conserved cysteines which are involved in disulphide bridges. It has a role in salt stress response and has antifungal activity. Length = 106

>gnl|CDD|216632 pfam01657, Stress-antifung, Salt stress response/antifungal Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 250
PF01657106 Stress-antifung: Salt stress response/antifungal; 99.94
PF01657106 Stress-antifung: Salt stress response/antifungal; 99.92
PF0717295 GRP: Glycine rich protein family; InterPro: IPR010 88.47
>PF01657 Stress-antifung: Salt stress response/antifungal; InterPro: IPR002902 This domain is found in plants and has no known function Back     alignment and domain information
Probab=99.94  E-value=3.1e-27  Score=180.00  Aligned_cols=102  Identities=37%  Similarity=0.788  Sum_probs=78.0

Q ss_pred             ccccC-CCCccc-CCCChHHHHHHHHHHHhhhcccCC--CCeeeeeccCCCCeEEEEEeccCCCCccchHHHHHHHHHHH
Q 040542           30 DELCL-SEMGNF-TKKSKYKANLDRVLSTISSNTKIS--YGFYTASYGRNNDQVNAMALCRGDVNPNSCRSCIKTSAVEL  105 (250)
Q Consensus        30 ~~~C~-~~~~~~-~~~s~f~~nl~~ll~~L~~~a~~~--~~f~~~~~g~~~~~vygl~qC~~Dls~~~C~~Cl~~a~~~~  105 (250)
                      |+.|+ +..++| +++++|++||+.||..|+.+++..  .+|++++.|.++++||||+||++|+++++|+.||+.|+.++
T Consensus         1 ~~~Cs~~~~~~~~~~~~~f~~~l~~ll~~l~~~a~~~~~~~f~~~~~~~~~~~vYgl~qC~~Dls~~dC~~Cl~~a~~~~   80 (106)
T PF01657_consen    1 WHFCSSNTNNNYTTDNSTFEQNLNSLLSSLVSNAASSSSKGFATGSAGSGPDTVYGLAQCRGDLSPSDCRACLADAVANI   80 (106)
T ss_dssp             ---E---SSB----TT-THHHHHHHHHHHHHHHGGGTT-TEEEEEE--ST---EEEEEEE-TTS-HHHHHHHHHHHHCCH
T ss_pred             CCcCCCCCCCCcCCCCchHHHHHHHHHHHHHHHHhhccccCcEEeecCCCCCeEEEEEEcCCCCChhhhHHHHHHHHHHH
Confidence            47898 432577 578889999999999999997643  47999998888999999999999999999999999999999


Q ss_pred             hhhCCCCcceEEEeceeEEEEccccc
Q 040542          106 RKHCPNQKEAVIWYDYCMLRYSNRYF  131 (250)
Q Consensus       106 ~~~C~~~~~a~i~~~~C~lrys~~~F  131 (250)
                      ++.|+.++||+||++.|+||||+++|
T Consensus        81 ~~~C~~~~g~~v~~~~C~lRY~~~~F  106 (106)
T PF01657_consen   81 SSCCPGSRGGRVWYDSCFLRYENYPF  106 (106)
T ss_dssp             HHHTTSBSSEEEEESSEEEEEESS--
T ss_pred             HHhCCCCceEEEECCCEEEEEECCCC
Confidence            99999999999999999999999998



The structure of this domain is known and it is thought to be involved in antifungal responses in plants []. Two copies of this domain are also found together in cysteine-rich protein kinases and cysteine-rich repeat secretory proteins. The domain contains four conserved cysteines.; PDB: 3A2E_D.

>PF01657 Stress-antifung: Salt stress response/antifungal; InterPro: IPR002902 This domain is found in plants and has no known function Back     alignment and domain information
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query250
2e79_A108 Ginkbilobin-2; DUF26 fold, C-X8-C-X2-C motif, lect 8e-26
2e79_A108 Ginkbilobin-2; DUF26 fold, C-X8-C-X2-C motif, lect 3e-24
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-05
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query250
3a2e_A108 Ginkbilobin-2; domain 26 unknown function (DUF26), 99.96
2e79_A108 Ginkbilobin-2; DUF26 fold, C-X8-C-X2-C motif, lect 99.95
3a2e_A108 Ginkbilobin-2; domain 26 unknown function (DUF26), 99.95
2e79_A108 Ginkbilobin-2; DUF26 fold, C-X8-C-X2-C motif, lect 99.94
>3a2e_A Ginkbilobin-2; domain 26 unknown function (DUF26), C-X8-C-X2-C motif, antifungal protein, embryo-abundant protein (EAP), plant protein; 2.38A {Ginkgo biloba} Back     alignment and structure
Probab=99.96  E-value=4.7e-29  Score=189.59  Aligned_cols=102  Identities=22%  Similarity=0.454  Sum_probs=92.4

Q ss_pred             CcccccCCCCcccCCCChHHHHHHHHHHHhhhcccCC-CCeeeeeccC-CCCeEEEEEeccCCCCccchHHHHHHHHHHH
Q 040542           28 PLDELCLSEMGNFTKKSKYKANLDRVLSTISSNTKIS-YGFYTASYGR-NNDQVNAMALCRGDVNPNSCRSCIKTSAVEL  105 (250)
Q Consensus        28 ~~~~~C~~~~~~~~~~s~f~~nl~~ll~~L~~~a~~~-~~f~~~~~g~-~~~~vygl~qC~~Dls~~~C~~Cl~~a~~~~  105 (250)
                      .+++.|++  ++|+++++|++||+.||+.|+++++.+ .+|++...+. ++++||||+||++|+++++|+.||+.|+.++
T Consensus         5 ~v~~~Cn~--~~~t~~s~f~~nl~~ll~~L~~~a~~s~~~~~t~~~~~~~~~~vygl~qC~~Dls~~~C~~Cl~~a~~~~   82 (108)
T 3a2e_A            5 FVSSACNT--QKIPSGSPFNRNLRAMLADLRQNTAFSGYDYKTSRAGSGGAPTAYGRATCKQSISQSDCTACLSNLVNRI   82 (108)
T ss_dssp             EEEEEECS--SBCCTTCTHHHHHHHHHHHHHHHGGGTTSEEEEEECCSTTCCCEEEEEEECTTSCHHHHHHHHHHHHTTH
T ss_pred             eeeeecCC--CccCCCChHHHHHHHHHHHHHhhCccccCCceEeeccCCCCceEEEEEEEcCCCCHHHHHHHHHHHHHHH
Confidence            56788976  499999999999999999999998654 3477777664 5699999999999999999999999999999


Q ss_pred             hhhCCCCcceEEEeceeEEEEccccc
Q 040542          106 RKHCPNQKEAVIWYDYCMLRYSNRYF  131 (250)
Q Consensus       106 ~~~C~~~~~a~i~~~~C~lrys~~~F  131 (250)
                      ++.||+++||+||+++|+||||+++|
T Consensus        83 ~~~C~~~~g~~i~~~~C~lRY~~~~F  108 (108)
T 3a2e_A           83 FSICNNAIGARVQLVDCFIQYEQRSF  108 (108)
T ss_dssp             HHHTTSBSSEEEEETTEEEEEESSCC
T ss_pred             HHHCCCCceEEEECCCEEEEEeCCcC
Confidence            99999999999999999999999998



>3a2e_A Ginkbilobin-2; domain 26 unknown function (DUF26), C-X8-C-X2-C motif, antifungal protein, embryo-abundant protein (EAP), plant protein; 2.38A {Ginkgo biloba} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00