Citrus Sinensis ID: 040542
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 250 | ||||||
| 224113937 | 318 | predicted protein [Populus trichocarpa] | 0.984 | 0.773 | 0.598 | 6e-80 | |
| 224107309 | 257 | predicted protein [Populus trichocarpa] | 0.996 | 0.968 | 0.549 | 6e-74 | |
| 255555039 | 295 | DUF26 domain-containing protein 1 precur | 0.948 | 0.803 | 0.521 | 1e-68 | |
| 147811956 | 839 | hypothetical protein VITISV_019620 [Viti | 0.988 | 0.294 | 0.530 | 2e-68 | |
| 358347848 | 671 | Cysteine-rich receptor-like protein kina | 0.936 | 0.348 | 0.531 | 1e-65 | |
| 358347946 | 552 | Cysteine-rich receptor-like protein kina | 0.936 | 0.423 | 0.531 | 2e-65 | |
| 359497268 | 675 | PREDICTED: cysteine-rich receptor-like p | 0.988 | 0.365 | 0.514 | 6e-64 | |
| 296088918 | 519 | unnamed protein product [Vitis vinifera] | 0.988 | 0.475 | 0.514 | 9e-64 | |
| 356575759 | 687 | PREDICTED: cysteine-rich receptor-like p | 0.964 | 0.350 | 0.506 | 2e-63 | |
| 356575761 | 679 | PREDICTED: cysteine-rich receptor-like p | 0.964 | 0.354 | 0.506 | 2e-63 |
| >gi|224113937|ref|XP_002316619.1| predicted protein [Populus trichocarpa] gi|222859684|gb|EEE97231.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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Score = 303 bits (775), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 149/249 (59%), Positives = 180/249 (72%), Gaps = 3/249 (1%)
Query: 1 MASSRLPLFLCSIVLQLVAHTIAQQDTPLDELCLSEMGNFTKKSKYKANLDRVLSTISSN 60
MA+S+L F C I + L+ +IAQ D PL C S+ GNFT S YK+NL+ +LS+ SSN
Sbjct: 5 MAASKLLFFFCPIFIYLLVLSIAQAD-PLYHFC-SKTGNFTNSSDYKSNLNNLLSSFSSN 62
Query: 61 TKISYGFYTASYGRNNDQVNAMALCRGDVNPNSCRSCIKTSAVELRKHCPNQKEAVIWYD 120
TKI YGFY SYG+NND+V A++LCRGD P +CRSCI S+ L + CPNQKEA IWYD
Sbjct: 63 TKIDYGFYNDSYGQNNDKVTAISLCRGDKKPETCRSCITNSSQVLTQLCPNQKEAYIWYD 122
Query: 121 YCMLRYSNRYFFGNMEFGPWFWMYNLHNVSDATTFNRDVATLLNILKNKATSGDNCRKFA 180
CMLRYSNR+ G+MEFGP FWMYN++NV+D F + LL L N A GD+ RKFA
Sbjct: 123 DCMLRYSNRFIVGSMEFGPHFWMYNVNNVTDEKEFYEKLNVLLGNLTNLAALGDSRRKFA 182
Query: 181 TGNATTTNS-LTIYALVQCTPDLEKQQCIDCLNNATALLPKCCDGRQGGRVIAPSCNFRY 239
TGNATT NS +YALVQCTPDL +QQC DCLN A L+P CC RQGGRV++PSC+FRY
Sbjct: 183 TGNATTENSQQKMYALVQCTPDLTRQQCSDCLNQAIKLIPTCCSKRQGGRVVSPSCHFRY 242
Query: 240 EIGRFYDLT 248
E FY+L
Sbjct: 243 EKDPFYELV 251
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Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224107309|ref|XP_002333535.1| predicted protein [Populus trichocarpa] gi|118488745|gb|ABK96183.1| unknown [Populus trichocarpa] gi|222837111|gb|EEE75490.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|255555039|ref|XP_002518557.1| DUF26 domain-containing protein 1 precursor, putative [Ricinus communis] gi|223542402|gb|EEF43944.1| DUF26 domain-containing protein 1 precursor, putative [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|147811956|emb|CAN74851.1| hypothetical protein VITISV_019620 [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|358347848|ref|XP_003637963.1| Cysteine-rich receptor-like protein kinase [Medicago truncatula] gi|355503898|gb|AES85101.1| Cysteine-rich receptor-like protein kinase [Medicago truncatula] | Back alignment and taxonomy information |
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| >gi|358347946|ref|XP_003638011.1| Cysteine-rich receptor-like protein kinase, partial [Medicago truncatula] gi|355503946|gb|AES85149.1| Cysteine-rich receptor-like protein kinase, partial [Medicago truncatula] | Back alignment and taxonomy information |
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| >gi|359497268|ref|XP_003635466.1| PREDICTED: cysteine-rich receptor-like protein kinase 25-like [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|296088918|emb|CBI38478.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|356575759|ref|XP_003556004.1| PREDICTED: cysteine-rich receptor-like protein kinase 29-like isoform 1 [Glycine max] | Back alignment and taxonomy information |
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| >gi|356575761|ref|XP_003556005.1| PREDICTED: cysteine-rich receptor-like protein kinase 29-like isoform 2 [Glycine max] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 250 | ||||||
| TAIR|locus:2095662 | 252 | AT3G22060 "AT3G22060" [Arabido | 0.968 | 0.960 | 0.436 | 4.4e-52 | |
| TAIR|locus:2141762 | 665 | CRK26 "cysteine-rich RLK (RECE | 0.976 | 0.366 | 0.387 | 1e-45 | |
| TAIR|locus:2115728 | 675 | CRK25 "cysteine-rich RLK (RECE | 0.948 | 0.351 | 0.420 | 1.3e-44 | |
| TAIR|locus:2127323 | 642 | CRK27 "cysteine-rich RLK (RECE | 0.964 | 0.375 | 0.411 | 1.2e-42 | |
| TAIR|locus:2141201 | 679 | CRK29 "cysteine-rich RLK (RECE | 0.94 | 0.346 | 0.408 | 4.3e-41 | |
| TAIR|locus:2095642 | 256 | AT3G21990 "AT3G21990" [Arabido | 0.936 | 0.914 | 0.360 | 3e-37 | |
| TAIR|locus:2095582 | 441 | AT3G21960 [Arabidopsis thalian | 0.904 | 0.512 | 0.352 | 2.1e-36 | |
| TAIR|locus:2085470 | 258 | AT3G58310 "AT3G58310" [Arabido | 0.848 | 0.821 | 0.376 | 9.2e-36 | |
| TAIR|locus:2065878 | 255 | AT2G31620 "AT2G31620" [Arabido | 0.884 | 0.866 | 0.334 | 8.3e-35 | |
| TAIR|locus:2830202 | 260 | AT3G21945 "AT3G21945" [Arabido | 0.888 | 0.853 | 0.376 | 1.1e-34 |
| TAIR|locus:2095662 AT3G22060 "AT3G22060" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 540 (195.1 bits), Expect = 4.4e-52, P = 4.4e-52
Identities = 109/250 (43%), Positives = 155/250 (62%)
Query: 1 MAS-SRLPLF-LCSIVLQLVA-HTI---AQQDTPLDELCLSEMGNFTKKSKYKANLDRVL 54
M+S R+ F + +I +Q+++ HT+ +Q + L C G+FT KS Y++NL+ +
Sbjct: 1 MSSLKRIVWFPILAIAIQILSIHTVLSQSQNNAFLFHKCSDIEGSFTSKSLYESNLNNLF 60
Query: 55 STISSNTKISYGFYTASYGRNNDQVNAMALCRGDVNPNSCRSCIKTSAVELRKHCPNQKE 114
S +S S GF +S G + VN +ALCRGD + + CRSC++T+ ELR+ CPN K
Sbjct: 61 SQLSYKVP-STGFAASSTGNTPNNVNGLALCRGDASSSDCRSCLETAIPELRQRCPNNKA 119
Query: 115 AVIWYDYCMLRYSNRYFFGNMEFGPWFWMYNLHNVSDATTFNRDVATLLNILKNKATSGD 174
++WYD C+++YS+ FFG ++F F++YN+ NVSD +TFN LL L KAT+ D
Sbjct: 120 GIVWYDNCLVKYSSTNFFGKIDFENRFYLYNVKNVSDPSTFNSQTKALLTELTKKATTRD 179
Query: 175 NCRKFATGNATTTNSLTIYALVQCTPDLEKQQCIDCLNNATALLPKCCDGRQGGRVIAPS 234
N + FATG + +Y LVQCT DL+ C CLN LP CCDG++GGRV+ S
Sbjct: 180 NQKLFATGEKNIGKN-KLYGLVQCTRDLKSITCKACLNGIIGELPNCCDGKEGGRVVGGS 238
Query: 235 CNFRYEIGRF 244
CNFRYEI F
Sbjct: 239 CNFRYEIYPF 248
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| TAIR|locus:2141762 CRK26 "cysteine-rich RLK (RECEPTOR-like protein kinase) 26" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2115728 CRK25 "cysteine-rich RLK (RECEPTOR-like protein kinase) 25" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2127323 CRK27 "cysteine-rich RLK (RECEPTOR-like protein kinase) 27" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2141201 CRK29 "cysteine-rich RLK (RECEPTOR-like protein kinase) 29" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2095642 AT3G21990 "AT3G21990" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2095582 AT3G21960 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2085470 AT3G58310 "AT3G58310" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2065878 AT2G31620 "AT2G31620" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2830202 AT3G21945 "AT3G21945" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 250 | |||
| pfam01657 | 106 | pfam01657, Stress-antifung, Salt stress response/a | 1e-30 | |
| pfam01657 | 106 | pfam01657, Stress-antifung, Salt stress response/a | 1e-21 |
| >gnl|CDD|216632 pfam01657, Stress-antifung, Salt stress response/antifungal | Back alignment and domain information |
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Score = 109 bits (274), Expect = 1e-30
Identities = 42/97 (43%), Positives = 61/97 (62%), Gaps = 3/97 (3%)
Query: 38 GNFTKK-SKYKANLDRVLSTISSN--TKISYGFYTASYGRNNDQVNAMALCRGDVNPNSC 94
GN+T S +++NL+ +LS++SSN + GF + G D V +A CRGD++ + C
Sbjct: 10 GNYTTANSTFESNLNALLSSLSSNAASSSGKGFAAGTSGAAPDTVYGLAQCRGDLSASDC 69
Query: 95 RSCIKTSAVELRKHCPNQKEAVIWYDYCMLRYSNRYF 131
RSC+ T+ ELR+ CPN+K IWYD C LRY + F
Sbjct: 70 RSCLATAVSELRRCCPNKKGGRIWYDSCFLRYESYPF 106
|
This domain is often found in association with the kinase domains pfam00069 or pfam07714. In many proteins it is duplicated. It contains six conserved cysteines which are involved in disulphide bridges. It has a role in salt stress response and has antifungal activity. Length = 106 |
| >gnl|CDD|216632 pfam01657, Stress-antifung, Salt stress response/antifungal | Back alignment and domain information |
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Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 250 | |||
| PF01657 | 106 | Stress-antifung: Salt stress response/antifungal; | 99.94 | |
| PF01657 | 106 | Stress-antifung: Salt stress response/antifungal; | 99.92 | |
| PF07172 | 95 | GRP: Glycine rich protein family; InterPro: IPR010 | 88.47 |
| >PF01657 Stress-antifung: Salt stress response/antifungal; InterPro: IPR002902 This domain is found in plants and has no known function | Back alignment and domain information |
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Probab=99.94 E-value=3.1e-27 Score=180.00 Aligned_cols=102 Identities=37% Similarity=0.788 Sum_probs=78.0
Q ss_pred ccccC-CCCccc-CCCChHHHHHHHHHHHhhhcccCC--CCeeeeeccCCCCeEEEEEeccCCCCccchHHHHHHHHHHH
Q 040542 30 DELCL-SEMGNF-TKKSKYKANLDRVLSTISSNTKIS--YGFYTASYGRNNDQVNAMALCRGDVNPNSCRSCIKTSAVEL 105 (250)
Q Consensus 30 ~~~C~-~~~~~~-~~~s~f~~nl~~ll~~L~~~a~~~--~~f~~~~~g~~~~~vygl~qC~~Dls~~~C~~Cl~~a~~~~ 105 (250)
|+.|+ +..++| +++++|++||+.||..|+.+++.. .+|++++.|.++++||||+||++|+++++|+.||+.|+.++
T Consensus 1 ~~~Cs~~~~~~~~~~~~~f~~~l~~ll~~l~~~a~~~~~~~f~~~~~~~~~~~vYgl~qC~~Dls~~dC~~Cl~~a~~~~ 80 (106)
T PF01657_consen 1 WHFCSSNTNNNYTTDNSTFEQNLNSLLSSLVSNAASSSSKGFATGSAGSGPDTVYGLAQCRGDLSPSDCRACLADAVANI 80 (106)
T ss_dssp ---E---SSB----TT-THHHHHHHHHHHHHHHGGGTT-TEEEEEE--ST---EEEEEEE-TTS-HHHHHHHHHHHHCCH
T ss_pred CCcCCCCCCCCcCCCCchHHHHHHHHHHHHHHHHhhccccCcEEeecCCCCCeEEEEEEcCCCCChhhhHHHHHHHHHHH
Confidence 47898 432577 578889999999999999997643 47999998888999999999999999999999999999999
Q ss_pred hhhCCCCcceEEEeceeEEEEccccc
Q 040542 106 RKHCPNQKEAVIWYDYCMLRYSNRYF 131 (250)
Q Consensus 106 ~~~C~~~~~a~i~~~~C~lrys~~~F 131 (250)
++.|+.++||+||++.|+||||+++|
T Consensus 81 ~~~C~~~~g~~v~~~~C~lRY~~~~F 106 (106)
T PF01657_consen 81 SSCCPGSRGGRVWYDSCFLRYENYPF 106 (106)
T ss_dssp HHHTTSBSSEEEEESSEEEEEESS--
T ss_pred HHhCCCCceEEEECCCEEEEEECCCC
Confidence 99999999999999999999999998
|
The structure of this domain is known and it is thought to be involved in antifungal responses in plants []. Two copies of this domain are also found together in cysteine-rich protein kinases and cysteine-rich repeat secretory proteins. The domain contains four conserved cysteines.; PDB: 3A2E_D. |
| >PF01657 Stress-antifung: Salt stress response/antifungal; InterPro: IPR002902 This domain is found in plants and has no known function | Back alignment and domain information |
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| >PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins | Back alignment and domain information |
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Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 250 | |||
| 2e79_A | 108 | Ginkbilobin-2; DUF26 fold, C-X8-C-X2-C motif, lect | 8e-26 | |
| 2e79_A | 108 | Ginkbilobin-2; DUF26 fold, C-X8-C-X2-C motif, lect | 3e-24 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 3e-05 |
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
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Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 250 | |||
| 3a2e_A | 108 | Ginkbilobin-2; domain 26 unknown function (DUF26), | 99.96 | |
| 2e79_A | 108 | Ginkbilobin-2; DUF26 fold, C-X8-C-X2-C motif, lect | 99.95 | |
| 3a2e_A | 108 | Ginkbilobin-2; domain 26 unknown function (DUF26), | 99.95 | |
| 2e79_A | 108 | Ginkbilobin-2; DUF26 fold, C-X8-C-X2-C motif, lect | 99.94 |
| >3a2e_A Ginkbilobin-2; domain 26 unknown function (DUF26), C-X8-C-X2-C motif, antifungal protein, embryo-abundant protein (EAP), plant protein; 2.38A {Ginkgo biloba} | Back alignment and structure |
|---|
Probab=99.96 E-value=4.7e-29 Score=189.59 Aligned_cols=102 Identities=22% Similarity=0.454 Sum_probs=92.4
Q ss_pred CcccccCCCCcccCCCChHHHHHHHHHHHhhhcccCC-CCeeeeeccC-CCCeEEEEEeccCCCCccchHHHHHHHHHHH
Q 040542 28 PLDELCLSEMGNFTKKSKYKANLDRVLSTISSNTKIS-YGFYTASYGR-NNDQVNAMALCRGDVNPNSCRSCIKTSAVEL 105 (250)
Q Consensus 28 ~~~~~C~~~~~~~~~~s~f~~nl~~ll~~L~~~a~~~-~~f~~~~~g~-~~~~vygl~qC~~Dls~~~C~~Cl~~a~~~~ 105 (250)
.+++.|++ ++|+++++|++||+.||+.|+++++.+ .+|++...+. ++++||||+||++|+++++|+.||+.|+.++
T Consensus 5 ~v~~~Cn~--~~~t~~s~f~~nl~~ll~~L~~~a~~s~~~~~t~~~~~~~~~~vygl~qC~~Dls~~~C~~Cl~~a~~~~ 82 (108)
T 3a2e_A 5 FVSSACNT--QKIPSGSPFNRNLRAMLADLRQNTAFSGYDYKTSRAGSGGAPTAYGRATCKQSISQSDCTACLSNLVNRI 82 (108)
T ss_dssp EEEEEECS--SBCCTTCTHHHHHHHHHHHHHHHGGGTTSEEEEEECCSTTCCCEEEEEEECTTSCHHHHHHHHHHHHTTH
T ss_pred eeeeecCC--CccCCCChHHHHHHHHHHHHHhhCccccCCceEeeccCCCCceEEEEEEEcCCCCHHHHHHHHHHHHHHH
Confidence 56788976 499999999999999999999998654 3477777664 5699999999999999999999999999999
Q ss_pred hhhCCCCcceEEEeceeEEEEccccc
Q 040542 106 RKHCPNQKEAVIWYDYCMLRYSNRYF 131 (250)
Q Consensus 106 ~~~C~~~~~a~i~~~~C~lrys~~~F 131 (250)
++.||+++||+||+++|+||||+++|
T Consensus 83 ~~~C~~~~g~~i~~~~C~lRY~~~~F 108 (108)
T 3a2e_A 83 FSICNNAIGARVQLVDCFIQYEQRSF 108 (108)
T ss_dssp HHHTTSBSSEEEEETTEEEEEESSCC
T ss_pred HHHCCCCceEEEECCCEEEEEeCCcC
Confidence 99999999999999999999999998
|
| >3a2e_A Ginkbilobin-2; domain 26 unknown function (DUF26), C-X8-C-X2-C motif, antifungal protein, embryo-abundant protein (EAP), plant protein; 2.38A {Ginkgo biloba} | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 80.00