Citrus Sinensis ID: 040608


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310----
MGQCQEHKTRPQSQVEIQERGEIFFFYRPKVGKEEAHSSDDVQRLYLVLRPESGERSVEQKQDPESGKEGAKKEESDSVKHGSGSSEGGHGSKLVNIEKELLLRFIVMGRKSLPDPREKSRPYWGFVEMVTTKVEDVKVALAGEEYDTSTRGHRRNLPARAVGEGVYRILRHSPGKKMHTHLIYKLEFPPEDMENETQESLNIEHEGSFLIQIKKPDQHGTSQFRGLQNKRKAVFPAHLQGQFGQKRYCPADPPDFLNYEGCEFLLISASDDIEEELGLELKTDEGEADESCSDLIKTFGETASTSALLRGTWV
cccccccccccccccccEEEcEEEEEEcccccccccccHHHHHHEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEcccccccccccccccEEEEEcccccHHHHHHHHcccccccccccccccccccccccccEEEEEccccccccEEEEEEEEccccccccHHHHHccccccccEEEEEEccccccccccccccccccccccHHHHHHHcccccccccccccccccccEEEEEEccccHHHHHccccccccccccccHHHHHHHHccccccccccccccc
ccccccccccccccHHEEEccEEEEEEcccccccccccHHHHHHEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEccccccccccccccEEEEEEcccccHHHHHHHHccccccccccccccccccccccccEEEEEEccccccccEEEEEEEEccccccccHHHHHcccccccEEEEEEcccccccccccccccccccccccHHHHHHHccccEccccccHHccccccEEEEEEccccHHHHHccccccccccccccHHHHHHHcccccccccccccccc
mgqcqehktrpqsqVEIQERGEIfffyrpkvgkeeahssddVQRLYLVLrpesgersveqkqdpesgkegakkeesdsvkhgsgssegghgsklVNIEKELLLRFIVMGrkslpdpreksrpywgFVEMVTTKVEDVKVALAGeeydtstrghrrnlparavgEGVYRILrhspgkkmhthliyklefppedmenetqeslniehegsfliqikkpdqhgtsqfrGLQNKrkavfpahlqgqfgqkrycpadppdflnyegcEFLLISASDDIEEELGLelktdegeadESCSDLIKTFGETASTSALLRGTWV
mgqcqehktrpqsqveiqeRGEIFFFYRPKVGkeeahssddvqRLYLVlrpesgersveqkqdpesgkegakkeesdsvkhgsgssegghgsklVNIEKELLLRFIVMgrkslpdpreksrpywgfVEMVTTKVEDVKVALAgeeydtstrghrrnlparavgegVYRILrhspgkkmhtHLIYKLEFPPEDMENETQESLNIEHEGSFLIQIKKPDQHGTSQFRGLQNKRKAVFPAHLQGQFGQKRYCPADPPDFLNYEGCEFLLISASDDIEEELGLElktdegeadESCSDLIKTFgetastsallrgtwv
MGQCQEHKTRPQSQVEIQERGEIFFFYRPKVGKEEAHSSDDVQRLYLVLRPESGERSVEQKQDPesgkegakkeesDsvkhgsgssegghgskLVNIEKELLLRFIVMGRKSLPDPREKSRPYWGFVEMVTTKVEDVKVALAGEEYDTSTRGHRRNLPARAVGEGVYRILRHSPGKKMHTHLIYKLEFPPEDMENETQESLNIEHEGSFLIQIKKPDQHGTSQFRGLQNKRKAVFPAHLQGQFGQKRYCPADPPDFLNYEGCEFLLISASDDIEEELGLELKTDEGEADESCSDLIKTFGETASTSALLRGTWV
********************GEIFFFYRPKV************RLYLV*********************************************LVNIEKELLLRFIVMGR***********PYWGFVEMVTTKVEDVKVALAGEEYDT*******NLPARAVGEGVYRILRHSPGKKMHTHLIYKLEF********************FLI********************KAVFPAHLQGQFGQKRYCPADPPDFLNYEGCEFLLISASDDI*****************************************
*******************RGEIFFFYRPKVGKE**HSSDDVQRLYLVLRPES*******************************************IEKELLLRFIVMGRKS*********PYWGFVEMVTTKVEDVKVALAGEEYDTSTRGHRRNLPARAVGEGVYRILRHSPGKKMHTHLIYKLEFPP**********LNIEHEGSFLIQIKK************************QGQFGQKRYCPADPPDFLNYEGCEFLLIS**************************************ALLRGTW*
**************VEIQERGEIFFFYRPKVG********DVQRLYLVLRPE**************************************GSKLVNIEKELLLRFIVMGRKSLPDPREKSRPYWGFVEMVTTKVEDVKVALAGEEYDTSTRGHRRNLPARAVGEGVYRILRHSPGKKMHTHLIYKLEFPPE*********LNIEHEGSFLIQIKKPDQHGTSQFRGLQNKRKAVFPAHLQGQFGQKRYCPADPPDFLNYEGCEFLLISASDDIEEELGLELK**********SDLIKTFGETASTSALLRGTWV
***********QSQVEIQERGEIFFFYRPKVGKEEAHSSDDVQRLYLVLRPES****************************************LVNIEKELLLRFIVMGRKSLPDPREKSRPYWGFVEMVTTKVEDVKVALAGEEYDTSTRGHRRNLPARAVGEGVYRILRHSPGKKMHTHLIYKLEFPPEDMENETQESLNIEHEGSFLIQIKKPDQHGTSQFRGLQNKRKAVFPAHLQGQFGQKRYCPADPPDFLNYEGCEFLLISASDDIEEELGL************CSD****F***ASTSALL*****
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MGQCQEHKTRPQSQVEIQERGEIFFFYRPKVGKEEAHSSDDVQRLYLVLRPESGERSVEQKQDPESGKEGAKKEESDSVKHGSGSSEGGHGSKLVNIEKELLLRFIVMGRKSLPDPREKSRPYWGFVEMVTTKVEDVKVALAGEEYDTSTRGHRRNLPARAVGEGVYRILRHSPGKKMHTHLIYKLEFPPEDMENETQESLNIEHEGSFLIQIKKPDQHGTSQFRGLQNKRKAVFPAHLQGQFGQKRYCPADPPDFLNYEGCEFLLISASDDIEEELGLELKTDEGEADESCSDLIKTFGETASTSALLRGTWV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query314
255544482315 conserved hypothetical protein [Ricinus 1.0 0.996 0.739 1e-134
225443429323 PREDICTED: uncharacterized protein LOC10 1.0 0.972 0.702 1e-123
15219361324 uncharacterized protein [Arabidopsis tha 0.993 0.962 0.685 1e-116
297844614324 hypothetical protein ARALYDRAFT_471873 [ 0.990 0.959 0.667 1e-111
242046378338 hypothetical protein SORBIDRAFT_02g03998 0.993 0.923 0.597 1e-101
414887686342 TPA: hypothetical protein ZEAMMB73_47394 0.974 0.894 0.566 1e-101
326495744339 predicted protein [Hordeum vulgare subsp 0.996 0.923 0.582 1e-99
145323918276 uncharacterized protein [Arabidopsis tha 0.840 0.956 0.659 1e-91
218190028344 hypothetical protein OsI_05801 [Oryza sa 0.984 0.898 0.561 6e-85
357147536347 PREDICTED: uncharacterized protein LOC10 0.980 0.887 0.535 1e-83
>gi|255544482|ref|XP_002513302.1| conserved hypothetical protein [Ricinus communis] gi|223547210|gb|EEF48705.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
 Score =  483 bits (1244), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 233/315 (73%), Positives = 270/315 (85%), Gaps = 1/315 (0%)

Query: 1   MGQCQEHKTRPQSQVEIQERGEIFFFYRPKVGKEEAHSSDDVQRLYLVLRPESGERSVEQ 60
           MGQ +E KTR + ++EIQERGEIFFFYRPKV KEEAHS DDVQRLY+VLRPESGERS+E+
Sbjct: 1   MGQGEEVKTRSEPEIEIQERGEIFFFYRPKVEKEEAHSPDDVQRLYVVLRPESGERSLEE 60

Query: 61  KQDPESGKEGAKKEESDSVKHGSGSSEGGHGSKLVNIEKELLLRFIVMGRKSLPDPREKS 120
           KQDP SGKE +KK    S       +EGGHG++ VNIEKE LLRFIVMGRKSLPDP +KS
Sbjct: 61  KQDPHSGKEASKKNSPSSSSSSKNETEGGHGTQQVNIEKEALLRFIVMGRKSLPDPSKKS 120

Query: 121 RPYWGFVEMVTTKVEDVKVALAGEEYDTSTRGHRRNLPARAVGEGVYRILRHSPGKKMHT 180
           +PYWGFV++VTT ++DVK AL GEEYDTSTRGHR   PARA+GEG+YRILRH+P K+MHT
Sbjct: 121 QPYWGFVDLVTTNIDDVKNALGGEEYDTSTRGHRHKYPARALGEGIYRILRHNPFKRMHT 180

Query: 181 HLIYKLEFPPEDMENETQESLNIEHEGSFLIQIKKPDQHGTSQFRGLQNKRKAVFPAHLQ 240
           HL+YKLEFPPED  NE Q+SLNI+ + SF+IQIK P+QH +S+FRGLQNKRKAVFPAHL+
Sbjct: 181 HLVYKLEFPPEDEGNEPQQSLNIDRQASFVIQIKNPEQHQSSRFRGLQNKRKAVFPAHLE 240

Query: 241 GQFGQKRYCPADPPDFLNYEGCEFLLISASDDIEEELGLELKTD-EGEADESCSDLIKTF 299
           GQFGQK YCPADPPDFLNYEGCEFLLISASDDIE+ELGLELKT+ E  AD  CSDL++TF
Sbjct: 241 GQFGQKGYCPADPPDFLNYEGCEFLLISASDDIEDELGLELKTECEAAADSPCSDLVETF 300

Query: 300 GETASTSALLRGTWV 314
           GE+ +TSAL RG+W 
Sbjct: 301 GESVATSALFRGSWA 315




Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225443429|ref|XP_002269450.1| PREDICTED: uncharacterized protein LOC100263288 [Vitis vinifera] gi|297735740|emb|CBI18427.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|15219361|ref|NP_173121.1| uncharacterized protein [Arabidopsis thaliana] gi|9954736|gb|AAG09089.1|AC026237_10 Hypothetical protein [Arabidopsis thaliana] gi|60547567|gb|AAX23747.1| hypothetical protein At1g16770 [Arabidopsis thaliana] gi|71905407|gb|AAZ52681.1| hypothetical protein At1g16770 [Arabidopsis thaliana] gi|332191373|gb|AEE29494.1| uncharacterized protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297844614|ref|XP_002890188.1| hypothetical protein ARALYDRAFT_471873 [Arabidopsis lyrata subsp. lyrata] gi|297336030|gb|EFH66447.1| hypothetical protein ARALYDRAFT_471873 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|242046378|ref|XP_002461060.1| hypothetical protein SORBIDRAFT_02g039980 [Sorghum bicolor] gi|241924437|gb|EER97581.1| hypothetical protein SORBIDRAFT_02g039980 [Sorghum bicolor] Back     alignment and taxonomy information
>gi|414887686|tpg|DAA63700.1| TPA: hypothetical protein ZEAMMB73_473940 [Zea mays] Back     alignment and taxonomy information
>gi|326495744|dbj|BAJ85968.1| predicted protein [Hordeum vulgare subsp. vulgare] Back     alignment and taxonomy information
>gi|145323918|ref|NP_001077548.1| uncharacterized protein [Arabidopsis thaliana] gi|71905409|gb|AAZ52682.1| hypothetical protein At1g16770 [Arabidopsis thaliana] gi|332191374|gb|AEE29495.1| uncharacterized protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|218190028|gb|EEC72455.1| hypothetical protein OsI_05801 [Oryza sativa Indica Group] gi|222622143|gb|EEE56275.1| hypothetical protein OsJ_05328 [Oryza sativa Japonica Group] Back     alignment and taxonomy information
>gi|357147536|ref|XP_003574383.1| PREDICTED: uncharacterized protein LOC100837097 [Brachypodium distachyon] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query314
TAIR|locus:2015641324 AT1G16770 "AT1G16770" [Arabido 0.993 0.962 0.641 1.1e-103
ASPGD|ASPL0000036574433 AN3024 [Emericella nidulans (t 0.535 0.387 0.306 9.1e-20
TAIR|locus:2015641 AT1G16770 "AT1G16770" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1027 (366.6 bits), Expect = 1.1e-103, P = 1.1e-103
 Identities = 208/324 (64%), Positives = 234/324 (72%)

Query:     1 MGQCQEHKTRPQSQVEIQERGEIFFFYRPKVGKEEAHSSDDVQRLYLVLRPESGERSVEQ 60
             MGQ +E KTRP  QVEIQERGEIFFFYRPKV KEEAHS DDVQRLY+V+RPESGE   E+
Sbjct:     1 MGQGKEVKTRPDPQVEIQERGEIFFFYRPKVNKEEAHSVDDVQRLYIVMRPESGENPTEE 60

Query:    61 KQDPXXXXXXXXXXXXDXXXXXXXXXXXXXXXX-----LVNIEKELLLRFIVMGRKSLPD 115
             KQDP            D                      VNIEK+LLLRFIVMG+KSLPD
Sbjct:    61 KQDPLSGKEGSDKDSGDGEASGSSSGAKNQGEGGHGVEKVNIEKQLLLRFIVMGKKSLPD 120

Query:   116 PREKSRPYWGFVEMVTTKVEDVKVALAGEEYDTSTRGHRRNLPARAVGEGVYRILRHSPG 175
             P +KS+P+WGFVEMVTT VEDVK AL GEEY+T TRGHR   PARAVGEG+YRILRH P 
Sbjct:   121 PSKKSQPFWGFVEMVTTNVEDVKNALKGEEYETKTRGHRHKPPARAVGEGIYRILRHKPN 180

Query:   176 --KKMHTHLIYKLEFPP--EDMENETQESLNIEHEGSFLIQIKKPDQHG--TSQFRGLQN 229
               +K HTHL+YKLEFP   +  E+E QESLNIE EGSFLIQI+ P+Q G   S F GLQ 
Sbjct:   181 PTRKHHTHLVYKLEFPSVSQTREHEPQESLNIEPEGSFLIQIRNPEQGGGGRSGFGGLQR 240

Query:   230 KRKAVFPAHLQGQFGQKRYCPADPPDFLNYEGCEFLLISASDDIEEELGLELKTDEGEAD 289
             KRKA FP H+Q   G  R+ PADPPDFLNYEGCE LLISASDDIEEELG+EL+  EG+ +
Sbjct:   241 KRKAQFPVHIQAHLGHTRFGPADPPDFLNYEGCELLLISASDDIEEELGMELEP-EGDGE 299

Query:   290 ESCSDLIKTFGETASTSALLRGTW 313
             ES  DL+KTFG+    + LLRGTW
Sbjct:   300 ESTCDLLKTFGDDVEATPLLRGTW 323




GO:0003674 "molecular_function" evidence=ND
GO:0005634 "nucleus" evidence=ISM
GO:0005737 "cytoplasm" evidence=ISM
GO:0008150 "biological_process" evidence=ND
ASPGD|ASPL0000036574 AN3024 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Fail to connect to STRING server


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 314
PF11303130 DUF3105: Protein of unknown function (DUF3105); In 88.44
>PF11303 DUF3105: Protein of unknown function (DUF3105); InterPro: IPR021454 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed Back     alignment and domain information
Probab=88.44  E-value=0.17  Score=43.80  Aligned_cols=39  Identities=21%  Similarity=0.451  Sum_probs=34.8

Q ss_pred             ccceeeceEEEEeccCCCCCCCCChhhhhee---eEEEeecC
Q 040608           15 VEIQERGEIFFFYRPKVGKEEAHSSDDVQRL---YLVLRPES   53 (314)
Q Consensus        15 ~~IlEKG~IYFFyRpkV~~ee~~s~dDVqR~---yivLrP~~   53 (314)
                      +--||.|-|.|+|+|.+.-++-..+.++++.   |+||.|.+
T Consensus        44 VH~LEHGaV~i~Y~p~~~~~~v~~L~~l~~~~~~~~visP~~   85 (130)
T PF11303_consen   44 VHNLEHGAVWITYDPCLPPDQVAKLKALAKSCLPYVVISPYP   85 (130)
T ss_pred             HHhhhcCcEEEEECCCCCHHHHHHHHHHHhccCCcEEEecCC
Confidence            6779999999999999988888899998877   89999964



Currently no function is known.


Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query314
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 40.6 bits (94), Expect = 6e-04
 Identities = 64/426 (15%), Positives = 118/426 (27%), Gaps = 160/426 (37%)

Query: 4   CQEHKTRPQSQVEIQERGEIFFFYRPKVGKEEAHSSDDV----QRLYLVLRP---ESGER 56
           C  +K      V+ +   +IF+     +     +S + V    Q+L   + P      + 
Sbjct: 171 CLSYK------VQCKMDFKIFWL---NLKNC--NSPETVLEMLQKLLYQIDPNWTSRSDH 219

Query: 57  SVEQKQDPESGKEGAKK-------EES----DSVKHGS--------------------GS 85
           S   K    S +   ++       E       +V++                        
Sbjct: 220 SSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTD 279

Query: 86  SEGGHGSKLVNIE-----------KELLLRFIVMGRKSLP------DPR------EKSRP 122
                 +  ++++           K LLL+++    + LP      +PR      E  R 
Sbjct: 280 FLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRD 339

Query: 123 Y---WGFVEMVTTK----------------------------VEDVKV---ALA-----G 143
               W   + V                                    +    L+      
Sbjct: 340 GLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDV 399

Query: 144 EEYDTS---TRGHRRNLPARAVGEGVYRI-------LRHSPGKK-MHTHLI--YKL--EF 188
            + D      + H+ +L  +   E    I             +  +H  ++  Y +   F
Sbjct: 400 IKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTF 459

Query: 189 PPEDMENETQESLNIEHEGSFLIQIKKPDQHGTSQFRG-------LQNK-RKAVFPAHLQ 240
             +D+     +     H G  L  I+ P++   + FR        L+ K R      +  
Sbjct: 460 DSDDLIPPYLDQYFYSHIGHHLKNIEHPER--MTLFRMVFLDFRFLEQKIRHDSTAWNAS 517

Query: 241 GQ----FGQ----KRY-CPADPP---------DFL-NYEGCEFLLISASDDIEEELGLEL 281
           G       Q    K Y C  DP          DFL   E  E L+ S   D+   L + L
Sbjct: 518 GSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIE--ENLICSKYTDL---LRIAL 572

Query: 282 KTDEGE 287
             ++  
Sbjct: 573 MAEDEA 578


Structure Templates Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00