Citrus Sinensis ID: 040608
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 314 | ||||||
| 255544482 | 315 | conserved hypothetical protein [Ricinus | 1.0 | 0.996 | 0.739 | 1e-134 | |
| 225443429 | 323 | PREDICTED: uncharacterized protein LOC10 | 1.0 | 0.972 | 0.702 | 1e-123 | |
| 15219361 | 324 | uncharacterized protein [Arabidopsis tha | 0.993 | 0.962 | 0.685 | 1e-116 | |
| 297844614 | 324 | hypothetical protein ARALYDRAFT_471873 [ | 0.990 | 0.959 | 0.667 | 1e-111 | |
| 242046378 | 338 | hypothetical protein SORBIDRAFT_02g03998 | 0.993 | 0.923 | 0.597 | 1e-101 | |
| 414887686 | 342 | TPA: hypothetical protein ZEAMMB73_47394 | 0.974 | 0.894 | 0.566 | 1e-101 | |
| 326495744 | 339 | predicted protein [Hordeum vulgare subsp | 0.996 | 0.923 | 0.582 | 1e-99 | |
| 145323918 | 276 | uncharacterized protein [Arabidopsis tha | 0.840 | 0.956 | 0.659 | 1e-91 | |
| 218190028 | 344 | hypothetical protein OsI_05801 [Oryza sa | 0.984 | 0.898 | 0.561 | 6e-85 | |
| 357147536 | 347 | PREDICTED: uncharacterized protein LOC10 | 0.980 | 0.887 | 0.535 | 1e-83 |
| >gi|255544482|ref|XP_002513302.1| conserved hypothetical protein [Ricinus communis] gi|223547210|gb|EEF48705.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 483 bits (1244), Expect = e-134, Method: Compositional matrix adjust.
Identities = 233/315 (73%), Positives = 270/315 (85%), Gaps = 1/315 (0%)
Query: 1 MGQCQEHKTRPQSQVEIQERGEIFFFYRPKVGKEEAHSSDDVQRLYLVLRPESGERSVEQ 60
MGQ +E KTR + ++EIQERGEIFFFYRPKV KEEAHS DDVQRLY+VLRPESGERS+E+
Sbjct: 1 MGQGEEVKTRSEPEIEIQERGEIFFFYRPKVEKEEAHSPDDVQRLYVVLRPESGERSLEE 60
Query: 61 KQDPESGKEGAKKEESDSVKHGSGSSEGGHGSKLVNIEKELLLRFIVMGRKSLPDPREKS 120
KQDP SGKE +KK S +EGGHG++ VNIEKE LLRFIVMGRKSLPDP +KS
Sbjct: 61 KQDPHSGKEASKKNSPSSSSSSKNETEGGHGTQQVNIEKEALLRFIVMGRKSLPDPSKKS 120
Query: 121 RPYWGFVEMVTTKVEDVKVALAGEEYDTSTRGHRRNLPARAVGEGVYRILRHSPGKKMHT 180
+PYWGFV++VTT ++DVK AL GEEYDTSTRGHR PARA+GEG+YRILRH+P K+MHT
Sbjct: 121 QPYWGFVDLVTTNIDDVKNALGGEEYDTSTRGHRHKYPARALGEGIYRILRHNPFKRMHT 180
Query: 181 HLIYKLEFPPEDMENETQESLNIEHEGSFLIQIKKPDQHGTSQFRGLQNKRKAVFPAHLQ 240
HL+YKLEFPPED NE Q+SLNI+ + SF+IQIK P+QH +S+FRGLQNKRKAVFPAHL+
Sbjct: 181 HLVYKLEFPPEDEGNEPQQSLNIDRQASFVIQIKNPEQHQSSRFRGLQNKRKAVFPAHLE 240
Query: 241 GQFGQKRYCPADPPDFLNYEGCEFLLISASDDIEEELGLELKTD-EGEADESCSDLIKTF 299
GQFGQK YCPADPPDFLNYEGCEFLLISASDDIE+ELGLELKT+ E AD CSDL++TF
Sbjct: 241 GQFGQKGYCPADPPDFLNYEGCEFLLISASDDIEDELGLELKTECEAAADSPCSDLVETF 300
Query: 300 GETASTSALLRGTWV 314
GE+ +TSAL RG+W
Sbjct: 301 GESVATSALFRGSWA 315
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225443429|ref|XP_002269450.1| PREDICTED: uncharacterized protein LOC100263288 [Vitis vinifera] gi|297735740|emb|CBI18427.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|15219361|ref|NP_173121.1| uncharacterized protein [Arabidopsis thaliana] gi|9954736|gb|AAG09089.1|AC026237_10 Hypothetical protein [Arabidopsis thaliana] gi|60547567|gb|AAX23747.1| hypothetical protein At1g16770 [Arabidopsis thaliana] gi|71905407|gb|AAZ52681.1| hypothetical protein At1g16770 [Arabidopsis thaliana] gi|332191373|gb|AEE29494.1| uncharacterized protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
| >gi|297844614|ref|XP_002890188.1| hypothetical protein ARALYDRAFT_471873 [Arabidopsis lyrata subsp. lyrata] gi|297336030|gb|EFH66447.1| hypothetical protein ARALYDRAFT_471873 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
| >gi|242046378|ref|XP_002461060.1| hypothetical protein SORBIDRAFT_02g039980 [Sorghum bicolor] gi|241924437|gb|EER97581.1| hypothetical protein SORBIDRAFT_02g039980 [Sorghum bicolor] | Back alignment and taxonomy information |
|---|
| >gi|414887686|tpg|DAA63700.1| TPA: hypothetical protein ZEAMMB73_473940 [Zea mays] | Back alignment and taxonomy information |
|---|
| >gi|326495744|dbj|BAJ85968.1| predicted protein [Hordeum vulgare subsp. vulgare] | Back alignment and taxonomy information |
|---|
| >gi|145323918|ref|NP_001077548.1| uncharacterized protein [Arabidopsis thaliana] gi|71905409|gb|AAZ52682.1| hypothetical protein At1g16770 [Arabidopsis thaliana] gi|332191374|gb|AEE29495.1| uncharacterized protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
| >gi|218190028|gb|EEC72455.1| hypothetical protein OsI_05801 [Oryza sativa Indica Group] gi|222622143|gb|EEE56275.1| hypothetical protein OsJ_05328 [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
|---|
| >gi|357147536|ref|XP_003574383.1| PREDICTED: uncharacterized protein LOC100837097 [Brachypodium distachyon] | Back alignment and taxonomy information |
|---|
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 314 | ||||||
| TAIR|locus:2015641 | 324 | AT1G16770 "AT1G16770" [Arabido | 0.993 | 0.962 | 0.641 | 1.1e-103 | |
| ASPGD|ASPL0000036574 | 433 | AN3024 [Emericella nidulans (t | 0.535 | 0.387 | 0.306 | 9.1e-20 |
| TAIR|locus:2015641 AT1G16770 "AT1G16770" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1027 (366.6 bits), Expect = 1.1e-103, P = 1.1e-103
Identities = 208/324 (64%), Positives = 234/324 (72%)
Query: 1 MGQCQEHKTRPQSQVEIQERGEIFFFYRPKVGKEEAHSSDDVQRLYLVLRPESGERSVEQ 60
MGQ +E KTRP QVEIQERGEIFFFYRPKV KEEAHS DDVQRLY+V+RPESGE E+
Sbjct: 1 MGQGKEVKTRPDPQVEIQERGEIFFFYRPKVNKEEAHSVDDVQRLYIVMRPESGENPTEE 60
Query: 61 KQDPXXXXXXXXXXXXDXXXXXXXXXXXXXXXX-----LVNIEKELLLRFIVMGRKSLPD 115
KQDP D VNIEK+LLLRFIVMG+KSLPD
Sbjct: 61 KQDPLSGKEGSDKDSGDGEASGSSSGAKNQGEGGHGVEKVNIEKQLLLRFIVMGKKSLPD 120
Query: 116 PREKSRPYWGFVEMVTTKVEDVKVALAGEEYDTSTRGHRRNLPARAVGEGVYRILRHSPG 175
P +KS+P+WGFVEMVTT VEDVK AL GEEY+T TRGHR PARAVGEG+YRILRH P
Sbjct: 121 PSKKSQPFWGFVEMVTTNVEDVKNALKGEEYETKTRGHRHKPPARAVGEGIYRILRHKPN 180
Query: 176 --KKMHTHLIYKLEFPP--EDMENETQESLNIEHEGSFLIQIKKPDQHG--TSQFRGLQN 229
+K HTHL+YKLEFP + E+E QESLNIE EGSFLIQI+ P+Q G S F GLQ
Sbjct: 181 PTRKHHTHLVYKLEFPSVSQTREHEPQESLNIEPEGSFLIQIRNPEQGGGGRSGFGGLQR 240
Query: 230 KRKAVFPAHLQGQFGQKRYCPADPPDFLNYEGCEFLLISASDDIEEELGLELKTDEGEAD 289
KRKA FP H+Q G R+ PADPPDFLNYEGCE LLISASDDIEEELG+EL+ EG+ +
Sbjct: 241 KRKAQFPVHIQAHLGHTRFGPADPPDFLNYEGCELLLISASDDIEEELGMELEP-EGDGE 299
Query: 290 ESCSDLIKTFGETASTSALLRGTW 313
ES DL+KTFG+ + LLRGTW
Sbjct: 300 ESTCDLLKTFGDDVEATPLLRGTW 323
|
|
| ASPGD|ASPL0000036574 AN3024 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 314 | |||
| PF11303 | 130 | DUF3105: Protein of unknown function (DUF3105); In | 88.44 |
| >PF11303 DUF3105: Protein of unknown function (DUF3105); InterPro: IPR021454 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=88.44 E-value=0.17 Score=43.80 Aligned_cols=39 Identities=21% Similarity=0.451 Sum_probs=34.8
Q ss_pred ccceeeceEEEEeccCCCCCCCCChhhhhee---eEEEeecC
Q 040608 15 VEIQERGEIFFFYRPKVGKEEAHSSDDVQRL---YLVLRPES 53 (314)
Q Consensus 15 ~~IlEKG~IYFFyRpkV~~ee~~s~dDVqR~---yivLrP~~ 53 (314)
+--||.|-|.|+|+|.+.-++-..+.++++. |+||.|.+
T Consensus 44 VH~LEHGaV~i~Y~p~~~~~~v~~L~~l~~~~~~~~visP~~ 85 (130)
T PF11303_consen 44 VHNLEHGAVWITYDPCLPPDQVAKLKALAKSCLPYVVISPYP 85 (130)
T ss_pred HHhhhcCcEEEEECCCCCHHHHHHHHHHHhccCCcEEEecCC
Confidence 6779999999999999988888899998877 89999964
|
Currently no function is known. |
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 314 | |||
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 6e-04 |
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 40.6 bits (94), Expect = 6e-04
Identities = 64/426 (15%), Positives = 118/426 (27%), Gaps = 160/426 (37%)
Query: 4 CQEHKTRPQSQVEIQERGEIFFFYRPKVGKEEAHSSDDV----QRLYLVLRP---ESGER 56
C +K V+ + +IF+ + +S + V Q+L + P +
Sbjct: 171 CLSYK------VQCKMDFKIFWL---NLKNC--NSPETVLEMLQKLLYQIDPNWTSRSDH 219
Query: 57 SVEQKQDPESGKEGAKK-------EES----DSVKHGS--------------------GS 85
S K S + ++ E +V++
Sbjct: 220 SSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTD 279
Query: 86 SEGGHGSKLVNIE-----------KELLLRFIVMGRKSLP------DPR------EKSRP 122
+ ++++ K LLL+++ + LP +PR E R
Sbjct: 280 FLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRD 339
Query: 123 Y---WGFVEMVTTK----------------------------VEDVKV---ALA-----G 143
W + V + L+
Sbjct: 340 GLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDV 399
Query: 144 EEYDTS---TRGHRRNLPARAVGEGVYRI-------LRHSPGKK-MHTHLI--YKL--EF 188
+ D + H+ +L + E I + +H ++ Y + F
Sbjct: 400 IKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTF 459
Query: 189 PPEDMENETQESLNIEHEGSFLIQIKKPDQHGTSQFRG-------LQNK-RKAVFPAHLQ 240
+D+ + H G L I+ P++ + FR L+ K R +
Sbjct: 460 DSDDLIPPYLDQYFYSHIGHHLKNIEHPER--MTLFRMVFLDFRFLEQKIRHDSTAWNAS 517
Query: 241 GQ----FGQ----KRY-CPADPP---------DFL-NYEGCEFLLISASDDIEEELGLEL 281
G Q K Y C DP DFL E E L+ S D+ L + L
Sbjct: 518 GSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIE--ENLICSKYTDL---LRIAL 572
Query: 282 KTDEGE 287
++
Sbjct: 573 MAEDEA 578
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 80.00